Trait Gene Id	CGSNL Gene Symbol	Gene symbol synonym(s)	CGSNL Gene Name	Gene name synonym(s)	Protein Name	Allele	Chromosome No.	Explanation	Trait Class	RAP ID	MSU ID	Gramene ID	Arm	Locate(cM)	Gene Ontology	Trait Ontology	Plant Ontology
1	[CMS-54257]	[cms-54257]*, [cms-54257]	CYTOPLASMIC MALE STERILITY 54257	Cytoplasmic mutant induced by somaclonal variation				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060167			GO:0007275 - multicellular organismal development, GO:0000001 - mitochondrion inheritance	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009066 - anther 
2	[CMS-AK]([CMS-JP])	[cms-ak]([cms-jp]), [cms-jp], [cms-ak]	CYTOPLASMIC MALE STERILITY AK	Akebono' cytoplasm, 'Akebono' cytoplasm				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060144			GO:0000001 - mitochondrion inheritance, GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009066 - anther 
3	[CMS-ARC]	[cms-ARC]*, [cms-ARC] [mt], [cms-ARC]	CYTOPLASMIC MALE STERILITY ARC	ARC13829-16 cytoplasm, `ARC13829-26' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060145			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
4	[CMS-BO]	[cms-bo]	CYTOPLASMIC MALE STERILITY BO	Chinsurah boro II' cytoplasm, `Chinsurah boro 2' cytoplasm, 'Chinsurah boro II' cytoplasm			Mt	PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage. X52160 (urf-rmc, chimeric atp6).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060146			GO:0007275 - multicellular organismal development, GO:0005739 - mitochondrion	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
5	[CMS-CW]	[cms-CW]	CYTOPLASMIC MALE STERILITY CW	Chinese wild rice cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060147			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
6	[CMS-GAM]	[cms-GAM]*, [cms-GAM]	CYTOPLASMIC MALE STERILITY GAM	Gambiaca cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060151			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
7	[CMS-HL]	[cms-HL]	CYTOPLASMIC MALE STERILITY HL	HL group cytoplasm, HL-group cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060152			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
8	[CMS-IR66707A]	[cms-IR66707A]*, [cms-IR66707A]	CYTOPLASMIC MALE STERILITY IR66707A	Oryza perennis Acc104823 cytoplasm, Oryza perennis Acc. 104823 cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060153			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
9	[CMS-KALINGA-I]	[cms-Kalinga-I]*, [cms-Kalinga-I]	CYTOPLASMIC MALE STERILITY KALINGA	Cytoplasmic controlled cold tolerance				PO:0006452; microspore (sensu Poaceae) ; PO:0009006; shoot ; PO:0009005; root ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007047; 02-seedling. Kalinga I cytoplasm.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060154			GO:0009409 - response to cold, GO:0007275 - multicellular organismal development	TO:0000280 - seedling vigor, TO:0000232 - cytoplasmic male sterility (sensu Oryza), TO:0000303 - cold tolerance	PO:0020048 - microspore , PO:0009005 - root , PO:0009082 - spikelet floret , PO:0009006 - shoot system 
10	[CMS-KHIABORO]	[cms-Khiaboro]*, [cms-Khiaboro]	CYTOPLASMIC MALE STERILITY KHIABORO	'Khiaboro' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060155			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
11	[CMS-ID]	[cms-ld]	CYTOPLASMIC MALE STERILITY ID	Lead rice' cytoplasm, 'Lead rice' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060156			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
12	[CMS-SP]	[cms-sp]*, [cms-sp]	CYTOPLASMIC MALE STERILITY SP	MS577A cytoplasm, `MS577A' cytoplasm, 'MS577A' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060158			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
13	[CMS-TA]	[cms-TA]	CYTOPLASMIC MALE STERILITY TA	TA820' cytoplasm, `TA820' cytoplasm, 'TA820' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060159			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
14	[CMS-UR102]	[cms-UR102]*, [cms-UR102]	CYTOPLASMIC MALE STERILITY UR102	UR102F' cytoplasm, `UR102F' cytoplasm, 'UR102F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060162			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
15	[CMS-UR104]	[cms-UR104]*, [cms-UR104]	CYTOPLASMIC MALE STERILITY UR104	UR104F' cytoplasm, `UR104F' cytoplasm, 'UR104F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060163			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
16	[CMS-UR106]	[cms-UR106]*, [cms-UR106]	CYTOPLASMIC MALE STERILITY UR106	UR106F' cytoplasm, `UR106F' cytoplasm, 'UR106F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060164			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
17	[CMS-UR27]	[cms-UR27]*, [cms-UR27]	CYTOPLASMIC MALE STERILITY UR27	UR27F' cytoplasm, `UR27F' cytoplasm, 'UR27F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060160			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
18	[CMS-UR89]	[cms-UR89]*, [cms-UR89]	CYTOPLASMIC MALE STERILITY UR89	UR89F' cytoplasm, `UR89F' cytoplasm, 'UR89F' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060161			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
19	[CMS-WA]	[cms-WA]	CYTOPLASMIC MALE STERILITY WA	WA group cytoplasm, WA-group cytoplasm				"PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.WA derived from \"wild abortive\", a wild sterile plant found in Hainan Island, China."	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060166			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
20	ACEF1	Ac ef1, Acef1	ACCELERATION OF HEADING EF 1	Acceleration of heading (ef1), Acceleration of heading (fl21)				A few days earlier heading than ef1 line when AC ef1 is combined with ef1. PO:0009049; inflorescence. GRO:0007044; 06-heading stage.	 Reproductive organ - Heading date			GR:0060003			GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
21	ACP3	Acp3	ACID PHOSPHATASE 3	Acid phosphatase3, Acid phosphatase 3, Acid phosphatase-3	ACID PHOSPHATASE 3			L(ST=C). Variant is known only in wild taxa.	 Biochemical character			GR:0060008			GO:0003993 - acid phosphatase activity		
22	AE1	ae1	AMYLOSE EXTENDER 1	amylose extender1, amylose extender 1, amylose extender-1				High amylose mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060016			GO:0007275 - multicellular organismal development, GO:0000271 - polysaccharide biosynthetic process	TO:0000196 - amylose content, TO:0000587 - endosperm quality, TO:0000487 - endosperm color, TO:0000098 - glutinous endosperm	PO:0009089 - endosperm 
23	AE2	ae2(t), ae2	AMYLOSE EXTENDER 2	amylose extender2, amylose extender 2, amylose extender-2				High amylose content (more than 30%) in white-cored grain.  This mutant was induced by the gamma rays. [RGN4:4]. High amylose mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060017			GO:0007275 - multicellular organismal development, GO:0000271 - polysaccharide biosynthetic process	TO:0000587 - endosperm quality, TO:0000196 - amylose content, TO:0000098 - glutinous endosperm, TO:0000487 - endosperm color	PO:0009089 - endosperm 
24	AGR1	agr1*, agr1	AGRAVITROPISM 1	agravitropism1, agravitropism 1, agravitropism-1				PO:0009009; embryo ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007043; 01-germination.	 Seed - Morphological traits - Embryo			GR:0060019			GO:0007275 - multicellular organismal development, GO:0009653 - anatomical structure morphogenesis, GO:0009630 - gravitropism, GO:0009790 - embryonic development	TO:0000064 - embryo related trait, TO:0000043 - root anatomy and morphology trait, TO:0000419 - leaf anatomy and morphology trait	PO:0009005 - root , PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
25	AM	Am(t)*, Am	HIGH AMYLOSE	High amylose				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060035			GO:0016051 - carbohydrate biosynthetic process	TO:0000196 - amylose content, TO:0000098 - glutinous endosperm	PO:0009089 - endosperm 
26	ANA	Ana*	AWN DEVELOPMENT A	Awn development-a				AWN DEVELOPMENT, Awn development. PO:0009010; seed ; PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060053			GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000072 - awn length	PO:0009010 - seed , PO:0006032 - lemma awn 
27	ANB	Anb*	AWN DEVELOPMENT B	Awn development-b				AWN DEVELOPMENT, Awn development. PO:0009009; embryo ; PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060054			GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000072 - awn length	PO:0006032 - lemma awn , PO:0009009 - plant embryo 
28	AO	ao	ACCERELATED INTERNODE OVERGROWTH	accerelated overgrowth of internode (Awa-odori), accerelated overgrowth of internode				Extreme extension of internode and leaf blade at the vegetative and reproductive stages. No ear formation. [RGN11:9]. PO:0020142; stem internode ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007148; 05-booting stage ; GRO:0007047; 02-seedling.	 Vegetative organ - Culm			GR:0060056			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000145 - internode length, TO:0000152 - panicle number, TO:0000370 - leaf width, TO:0000135 - leaf length	PO:0020142 - stem internode , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
29	APD1	apd1, apd1*	APICAL DISPLACEMENT 1	apical displacement1, apical displacement 1, apical displacement-1		apd1-1		Positions of both shoot and root in an embryo are displaced to the apex of embryo compared with those of the wild type.Only one mutant allele, apd1-1, has been identified.In a recessive allele, position of shoot meristem is displaced toward the embryo apex due to underdevelopment of scutellum. Multiple radicles are formed.Taichung 65. PO:0009047; stem ; PO:0009009; embryo ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Embryo			GR:0060057			GO:0009790 - embryonic development, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth, GO:0009653 - anatomical structure morphogenesis	TO:0000492 - leaf shape, TO:0000040 - panicle length, TO:0000370 - leaf width, TO:0000576 - stem length, TO:0000064 - embryo related trait	PO:0009047 - stem , PO:0009025 - vascular leaf , PO:0009009 - plant embryo , PO:0009049 - inflorescence 
30	AS	as	ASYNAPSIS 1	asynapsis1, asynapsis 1, asynapsis					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060062			GO:0007129 - synapsis		
31	BC6	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1	BRITTLE CULM 6	Brittle culm6, Brittle culm 6, Brittle culm-6, Cellulose synthase A catalytic subunit 9 [UDP-forming], Cellulose synthase A catalytic subunit 9, semi-dominant brittle culm 1, fragile culm 16	CELLULOSE SYNTHASE A9	cesa9, Bc6, bc6, Osfc16, bc88, sdbc1	9	Induced from IR68 by EMS treatment. CELLULOSE SYNTHASE CATALYTIC SUBUNIT. AB527075. EC=2.4.1.12 A2Z1C8(indica). Q69P51(japonica).GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association. lodging resistance. GO:1901698: response to nitrogen compound. BC88 in Rao et al. 2013. TO:0000993: cellulose content   GO:0072593: reactive oxygen species metabolic process. TO:0000825: leaf flexibility.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance	Os09g0422500 	LOC_Os09g25490.1	GR:0060073			GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0048573 - photoperiodism, flowering, GO:0002213 - defense response to insect, GO:0008270 - zinc ion binding, GO:0009642 - response to light intensity, GO:0009610 - response to symbiotic fungus, GO:0009808 - lignin metabolic process, GO:0052324 - cell wall cellulose biosynthetic process, GO:0010410 - hemicellulose metabolic process, GO:0030244 - cellulose biosynthetic process, GO:0006950 - response to stress, GO:0007047 - cell wall organization, GO:0009834 - secondary cell wall biogenesis, GO:0016020 - membrane, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0031225 - anchored to membrane, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0009723 - response to ethylene stimulus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009531 - secondary cell wall, GO:0005515 - protein binding, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000108 - leaf shattering, TO:0000051 - stem strength, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0000061 - node shattering, TO:0000424 - brown planthopper resistance, TO:0000227 - root length, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0006001 - salt tolerance, TO:0000346 - tiller number, TO:0000173 - ethylene sensitivity, TO:0000460 - light intensity sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000168 - abiotic stress trait, TO:0000608 - sodium content, TO:0000557 - secondary branch number, TO:0000333 - sugar content	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0000025 - root tip , PO:0025025 - root system 
32	BD2	bd2	BEAKED LEMMA 2	beaked lemma2, beaked lemma 2, beaked lemma-2				The tip of lemma bends as beak shape. Duplicate gene with bd1. PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060075			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009038 - palea , PO:0009037 - lemma 
33	BF	Bf	BROWN FURROWS OF HULL	Brown furrows of hull				The part of interveins (furrows) of floral glumes is colored brown. [298] PO:0009047; stem ; PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060077			GO:0043473 - pigmentation	TO:0000056 - stem color, TO:0000264 - lemma and palea color, TO:0000287 - brown rice shape	PO:0009088 - seed coat , PO:0009047 - stem , PO:0009039 - glume 
34	BHA	Bha(Bh1), Bha, Bh1	BLACK HULL A	Black hull-a, Black hull-1				Black ripening color of floral glumes.  Complementary action of three genes, Bha, Bhb, and Bhc. PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060079			GO:0043473 - pigmentation	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	PO:0009039 - glume , PO:0009088 - seed coat 
35	BHB	Bhb(Bh2), Bhb, Bh2	BLACK HULL B	Black hull-b, Black hull-2				Black ripening color of floral glumes.  Complementary action of three genes, Bha, Bhb, and Bhc. PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060080			GO:0043473 - pigmentation	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	PO:0009039 - glume , PO:0009088 - seed coat 
36	BL5	bl5	BROWN LEAF SPOT 5	brown leaf spot5, brown leaf spot 5, brown leaf spot-5				Small brown speckles with the size of sesame seed appear on leaf baldes. [499] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060086			GO:0015996 - chlorophyll catabolic process	TO:0000063 - mimic response, TO:0000069 - variegated leaf, TO:0000326 - leaf color	PO:0009025 - vascular leaf 
37	BL6	bl6	BROWN LEAF SPOT 6	brown leaf spot6, brown leaf spot 6, brown leaf spot-6				Relatively large brown spots appear on leaves. [499] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060087			GO:0015996 - chlorophyll catabolic process	TO:0000063 - mimic response, TO:0000326 - leaf color, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
38	BPH5	bph5	BROWN PLANTHOPPER RESISTANCE 5	brown planthopper resistance 5, brown planthopper resistance-5				PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060093			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009025 - vascular leaf , PO:0009006 - shoot system 
39	BPH6	Bph6, OsBPH6	BROWN PLANTHOPPER RESISTANCE 6	brown planthopper resistance 6, Brown planthopper resistance-6			4	KX818197 (cDNA, indica, cultivar Swarnalata), KX818198 (genomic, indica, cultivar Swarnalata). Gene Expression Omnibus (GEO) under accession code GSE86379. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Bph6 was finally located in a region bordered by the STS markers Y19 and Y9; the corresponding region is 25-kb on BAC clone OSJNBa0084A10 of Nipponbare. We observed that there were many differences in the deduced amino acid sequences encoded by Bph6 in Swarnalata and Nipponbare (Guo et al. 2018). GO:2000031: regulation of salicylic acid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Insect resistance	Os04g0431700	LOC_Os04g35210.1	GR:0060094			GO:0000145 - exocyst, GO:0080036 - regulation of cytokinin mediated signaling, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009625 - response to insect, GO:0045921 - positive regulation of exocytosis, GO:0009736 - cytokinin mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000205 - white-backed planthopper resistance, TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
40	BPH7	bph7	BROWN PLANTHOPPER RESISTANCE 7	brown planthopper resistance 7, brown planthopper resistance-7			12	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. The BPH7 gene is located on the long arm of chromosome 12 between simple sequence repeat markers markers RM3448 and RM313. KU221258 (Indica).	 Tolerance and resistance - Insect resistance			GR:0060095			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009025 - vascular leaf , PO:0009006 - shoot system 
41	BPH8	bph8	BROWN PLANTHOPPER RESISTANCE 8	brown planthopper resistance 8, brown planthopper resistance-8				Brown planthopper resistance. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060096			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009025 - vascular leaf , PO:0009006 - shoot system 
42	BPH9	Bph9, BPH9/26, Bph26(t), BPH26, Bph18(t), BPH18	BROWN PLANTHOPPER RESISTANCE 9	brown planthopper resistance 9, Brown planthopper resistance-9, BROWN PLANTHOPPER RESISTANCE 26, BROWN PLANTHOPPER RESISTANCE 18			12	Brown planthopper resistance. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling. KU216220, KU216221 (Indica Bph9). GO:0080151: positive regulation of salicylic acid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway. BPH9 is allelic to BPH26 (Zhao et al. 2016). a nucleotide-binding and leucine-rich repeat (NLR)-containing protein. BPH9 (KU216220) = LOC_Os12g37290 in Kamolsukyeunyong et al. 2019. LOC_Os12g37280 (BPH26). BPH26 gene conferring resistance to BPH derived from a BPH-resistant indica rice cultivar, Oryza sativa ADR52. AB910360 (BPH26). a coiled-coil-nucleotide-binding-site-leucine-rich repeat (CC-NBS-LRR) protein. BPH26 was identical to BPH2 on the basis of DNA sequence analysis and feeding ability of the BPH2-virulent biotype of BPH. Two putative genes (Os12g0559400 and Os12g0559600) were predicted to encode parts of one nucleotide-binding site-leucine-rich repeat (NBS-LRR) protein (Tamura et al. 2014). LOC_Os12g37290 (BPH18).	 Tolerance and resistance - Insect resistance	Os12g0559400	LOC_Os12g37280.1, LOC_Os12g37290.1	GR:0060097			GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0043531 - ADP binding, GO:0009625 - response to insect	TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
43	BSV	Bsv(Bs), Bs, Bsv	BLACK STREAKED DWARF RESISTANCE	Black streaked dwarf resistance				Dominant gene. Resistant to black streaked dwarf disease (viral disease transmitted by Small Brown Planthopper, Laodelphax striatellus). PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060103			GO:0009615 - response to virus	TO:0000020 - black streak dwarf virus resistance	PO:0009025 - vascular leaf , PO:0009006 - shoot system 
44	BZS	bzs, bol	BENTAZON SUSCEPTIBILITY	bentazon susceptibility				Susceptible to the herbicide bentazon to which the rice is tolerant normally. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Stress tolerance			GR:0060105			GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
45	CE	Ce, Ce1, Ce2	CERCOSPORA RESISTANCE	Cercospora resistance, Cercospora resistance-1, Cercospora resistance-2				PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060116			GO:0009620 - response to fungus	TO:0000422 - narrow brown leaf spot disease resistance	PO:0009025 - vascular leaf 
46	CG	cg*, cg	CIGER SHAPED PANICLE	ciger shaped panicle				PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060117			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000391 - seed size, TO:0000576 - stem length, TO:0000146 - seed length	PO:0009049 - inflorescence , PO:0009047 - stem , PO:0009010 - seed 
47	CHS2	chs2(t)*, chs2	CHLOROSIS CAUSED BY LOW TEMPERATURE 2	chlorosis caused by low temperature2, chlorosis caused by low temperature 2, chlorosis caused by low temperature-2		chs2-B, chs2-C		chlorosis caused by low temperature (17C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060130			GO:0015995 - chlorophyll biosynthetic process, GO:0015994 - chlorophyll metabolic process, GO:0009409 - response to cold	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf 
48	CHS3	chs3(t)*, chs3	CHLOROSIS CAUSED BY LOW TEMPERATURE 3	chlorosis caused by low temperature3, chlorosis caused by low temperature 3, chlorosis caused by low temperature-3				chlorosis caused by low temperature (17C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060131			GO:0015994 - chlorophyll metabolic process, GO:0015995 - chlorophyll biosynthetic process, GO:0009409 - response to cold	TO:0000432 - temperature response trait, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
49	CHS4	chs4(t)*, chs4	CHLOROSIS CAUSED BY LOW TEMPERATURE 4	chlorosis caused by low temperature4, chlorosis caused by low temperature 4, chlorosis caused by low temperature-4				chlorosis caused by low temperature (15C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060132			GO:0015995 - chlorophyll biosynthetic process, GO:0009409 - response to cold, GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf 
50	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3	CHITINASE 4	Chitinase4, Chitinase IIb, Chitinase 4, Pathogenesis related (PR)-3 chitinase 4, Chitinase-4, PR-3 CLASS IV CHITINASE, Chitinase-4(novel type)	CHITINASE 4		4	EC=3.2.1.14 PR-3 chitinase. pathogenesis related 3 chitinase. O04138. D47304, C19108, AB054687. CHIT2 in Liu et al. 2018. OsPR3  in Chen et al. 2018.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0493400	LOC_Os04g41620.1	GR:0060136			GO:0008061 - chitin binding, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0009738 - abscisic acid mediated signaling, GO:0004568 - chitinase activity, GO:0051707 - response to other organism, GO:0006952 - defense response, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0042742 - defense response to bacterium, GO:0009617 - response to bacterium	TO:0000175 - bacterial blight disease resistance	
51	CIM	cinm*, CINM, cim, cinm	CROSS-INCOMPATIBILITY REACTIONS IN THE MALE	cross-incompatibility carried by T65wx		cim, Cim	6	Cross-incompatibility carried by T65wx. PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060140			GO:0009566 - fertilization, GO:0009856 - pollination	TO:0000035 - incompatibility trait	PO:0009082 - spikelet floret 
52	CLE1	cle*, cle1	CLUB-SHAPED EMBRYO 1	club-shaped embryo1, club-shaped embryo 1, club-shaped embryo-1		cle1-1, cle1-2, cle1-3, cle1-4, cle1-5		This gene produces undifferentiated minute club-shaped embryos. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060142			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
53	CLW	clw	CLAW SHAPED SPIKELET	claw shaped spikelet				The palea grows short such as being covered by lemma, showing claw shaped expression. [499] PO:0009038; palea ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060143			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009038 - palea , PO:0009037 - lemma , PO:0009082 - spikelet floret 
54	CNX1	cnx1*, cnx1, cnx 1	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  1	molybden cofactor1, molybden cofactor 1, molybdenum cofactor for nitrate reductase-1, cofactor for nitrate reductase and xanthine dehydrogenase 1	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1			Molybdenum cofactor (MoCo) is deficient. Nitrate reductase (NR) activity is considerably low compared to the wild type. Addition of molybdate recovers NR activity to that of the wild type level. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Biochemical character			GR:0060170			GO:0016612 - molybdenum-iron nitrogenase complex, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0016163 - nitrogenase activity		PO:0009006 - shoot system , PO:0009025 - vascular leaf 
55	CNX2	cnx2*, cnx2, cnx 2	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  2	molybden cofactor2, molybden cofactor 2, molybdenum cofactor for nitrate reductase-2, cofactor for nitrate reductase and xanthine dehydrogenase 2	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  2			Molybdenum cofactor (MoCo) is deficient. Activity of nitrate reductase is considerably low compared to its wild type. Addition of molybdate does not recover the activity. This gene is located between RFLP markers C513 and C377 on the long arm of chromosome 4. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Biochemical character			GR:0060171			GO:0016612 - molybdenum-iron nitrogenase complex, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0016163 - nitrogenase activity		PO:0009025 - vascular leaf , PO:0009006 - shoot system 
56	CNX3	cnx3*, cnx3, cnx 3	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  3	molybden cofactor3, molybden cofactor 3, molybdenum cofactor for nitrate reductase-3, cofactor for nitrate reductase and xanthine dehydrogenase 3	COFACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE  3			Molybdenum cofactor (MoCo) deficient mutant. Activity of nitrate reductase and xanthine dehydrogenase is considerably lower than in the wild type. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling.	 Biochemical character			GR:0060172			GO:0016612 - molybdenum-iron nitrogenase complex, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0016163 - nitrogenase activity		PO:0009006 - shoot system , PO:0009025 - vascular leaf 
57	CPS	cps	COMPACT PANICLE STERILE	compact panicle sterile				PO:0009036; lodicule ; PO:0006384; gynoecium (sensu Poaceae) ; PO:0009038; palea ; PO:0006457; ovule (sensu Poaceae) ; PO:0009037; lemma ; PO:0006442; anther (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Other sterilities			GR:0060174			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000485 - sterility related trait, TO:0000436 - spikelet sterility, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009062 - gynoecium , PO:0009066 - anther , PO:0020003 - plant ovule , PO:0009036 - lodicule , PO:0009037 - lemma , PO:0009038 - palea , PO:0009082 - spikelet floret 
58	CTB	Ctb*, Ctb, Ctb1	COLD TOLERANCE AT THE BOOTING STAGE	Cold tolerance at the booting stage, Cold tolerance at booting stage-1				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060177			GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
59	CTS1	Cts1	COLD TOLERANCE AT SEEDLING STAGE 1	Cold tolerance at seedling stage1, Cold tolerance at seedling stage 1, Cold tolerance at seedling stage-1				Cold tolerance was examined with 10-day old seedlings to cold water temperature (12C) for 10 days. dominant gene. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060178			GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
60	CTS2	Cts2(t), Cts2	COLD TOLERANCE AT SEEDLING STAGE 2	Cold tolerance at seedling stage2, Cold tolerance at seedling stage 2, Cold tolerance at seedling stage-2				Tolerance to chilling injury of young (12 days old) seedling expressed at 5C for 4 days.Without this gene, whole leaf blade and leaf sheath become withered and dead. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Stress tolerance			GR:0060179			GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009025 - vascular leaf 
61	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9	DWARF YUKARA DWARF OR FUKEI 71	yukara dwarf or fukei 71 dwarf, dwarf-12, DWARF50	INOSITOL POLYPHOSPHATE 5-PHOSPHATASE	F71(d50)(japonica), d12, d32, DMT9(japonica)	2	This gene remarkably shortens the internodes at and below the third one, increasing lodging resistance and protecting from cool weather with a shallower irrigation water. Flag leaves are erect. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage.D50 gene,  encoding inositol polyphosphate 5-phosphatase, is required for development of intercalary meristem. (2012) AB571989.	 Vegetative organ - Culm	Os02g0477700	LOC_Os02g27620.1, LOC_Os02g27620.2	GR:0060194			GO:0009266 - response to temperature stimulus, GO:0009826 - unidimensional cell growth, GO:0009832 - plant-type cell wall biogenesis	TO:0000576 - stem length, TO:0000124 - flag leaf angle, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000432 - temperature response trait, TO:0000145 - internode length, TO:0000068 - lodging incidence	PO:0009047 - stem 
62	D13	d13, dwf12	DWARF SHORT GRAINED	short grained dwarf, dwarf-13				Dwarf. Small stout panicle axis and round grains. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed.	 Vegetative organ - Culm			GR:0060195			GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000342 - panicle axis angle, TO:0000391 - seed size, TO:0000089 - panicle type, TO:0000576 - stem length, TO:0000207 - plant height	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009047 - stem 
63	D17	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsHTD1, OsD17	DWARF SLENDER DWARF, TILLERING	slender dwarf, tillering dwarf, dwarf-17, high-tillering dwarf1, high-tillering dwarf 1, High-Tillering Dwarf1, High-Tillering Dwarf 1, high tillering and dwarf 1, catotenoid dioxygenase 7, carotenoid-cleaving dioxygenase 7, carotenoid cleavage dioxygenase 7, MAX3 ortholog	CATOTENOID DIOXYGENASE 7 	d17, d17-1, d17-2, ccd7, ccd7c1, ccd7c2, ccd7c3, ccd7c4, ccd7c5, ccd7c6, ccd7c7, ccd7c8, ccd7c9, ccd7c10	4	"Similar to \"bunketsu-waito\". Profuse tillering with slender leaves. [10003]  AL663000. Q7XU29. GO:1901601: strigolactone biosynthetic process. GO:1901698: response to nitrogen compound. GO:0036377: arbuscular mycorrhizal association. TO:0006064: rolled leaf. TO:0006044: magnesium content. TO:0006047: calcium content trait. GO:1902347: response to strigolactone"	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility	Os04g0550600	LOC_Os04g46470.1	GR:0060197,GR:0080027			GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0009733 - response to auxin stimulus, GO:0046872 - metal ion binding, GO:0016121 - carotene catabolic process, GO:0007275 - multicellular organismal development, GO:0009735 - response to cytokinin stimulus, GO:0010223 - secondary shoot formation, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0042594 - response to starvation, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0046685 - response to arsenic, GO:0009753 - response to jasmonic acid stimulus	TO:0000401 - plant growth hormone sensitivity, TO:0000370 - leaf width, TO:0000180 - spikelet fertility, TO:0000346 - tiller number, TO:0000011 - nitrogen sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000089 - panicle type, TO:0000605 - hydrogen peroxide content, TO:0001016 - relative chlorophyll content, TO:0000576 - stem length, TO:0000492 - leaf shape, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000326 - leaf color, TO:0000152 - panicle number, TO:0000136 - relative water content	PO:0009005 - root , PO:0004709 - axillary bud , PO:0006023 - bundle sheath , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0005001 - basal axillary shoot system , PO:0009006 - shoot system , PO:0007073 - 2 formation of axillary shoot stage , PO:0009047 - stem 
64	D19	d19(t), dwf16, d19	DWARF KAMIKAWA	kamikawa dwarf, dwarf-19				Short culms and dense panicles with undulate rachis. PO:0009047; stem ; PO:0009049; inflorescence.	 Vegetative organ - Culm			GR:0060199			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000089 - panicle type	PO:0009047 - stem , PO:0009049 - inflorescence 
65	D22	d22(t), dwf19, d22	DWARF JOKEI 6549	jokei 6549 dwarf, dwarf-22				PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed.	 Vegetative organ - Culm			GR:0060202			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000391 - seed size, TO:0000576 - stem length, TO:0000207 - plant height	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009047 - stem 
66	D23	d23(t), dwf20, d23	DWARF AH-7	ah-7 dwarf, dwarf-23				slender culms with normal grains. PO:0009047; stem ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060203			GO:0007275 - multicellular organismal development	TO:0000132 - basal internode diameter, TO:0000207 - plant height, TO:0000339 - stem thickness, TO:0000576 - stem length	PO:0005005 - shoot internode , PO:0009047 - stem 
67	D24	d24(t), dwf21, d24	DWARF M-7	m-7 dwarf, dwarf-24				Slender and sinuous culms with short grains. PO:0009047; stem ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060204			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000132 - basal internode diameter, TO:0000207 - plant height, TO:0000361 - stem anatomy and morphology trait, TO:0000391 - seed size	PO:0005005 - shoot internode , PO:0009047 - stem 
68	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A	DWARF TANGINBOZU	tanginbozu dwarf, Tan-Ginbozu, dwarf-35, ent-kaurene oxidase2, cytochrome P450 701A6	ENT-KAURENE OXIDASE-LIKE PROTEIN 2	osko2-1, osko2-2, ko2, ko2-1, ko2-2(d35), d35Tan-Ginboze, d35-1, d35-2	6	ent-kaurene oxidase, ENT-KAURENE OXIDASE, KO. GRO:0007151; 6.1-flowering stage ; GRO:0007139; A-vegetative stage. AY660665. This gene encodes one of the GA metabolic enzymes, ent-kaurene oxidase (K0). It is locasted on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5. EF577644-EF577648 (wild rice species).	 Vegetative organ - Culm,  Biochemical character	Os06g0570100	LOC_Os06g37364.1, LOC_Os06g37364.2, LOC_Os06g37364.3	GR:0060213			GO:0009686 - gibberellin biosynthetic process, GO:0032940 - secretion by cell, GO:0022900 - electron transport chain, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004497 - monooxygenase activity, GO:0010241 - ent-kaurene oxidase activity, GO:0009055 - electron carrier activity	TO:0000576 - stem length, TO:0000207 - plant height	PO:0020104 - leaf sheath , PO:0020039 - leaf lamina , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020122 - inflorescence axis 
69	D49	d49(t)	DWARF REIMEI	reimei dwarf					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development	TO:0000207 - plant height	
70	D59	d59(t), dwf40, d59	DWARF DM107-4	dwarf (DM107-4), dwarf-59				40% shorter in plant height compared with the original variety. Lodging tolerance. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060224			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000068 - lodging incidence	PO:0009047 - stem 
71	DA	Da(D1), Da, D1, Dhl3	DOMINANT LETHAL	Dominant lethal, Dominant lethal-a, Dominant hybrid lethal-3				complementary. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060228			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
72	DB	Db(D2), D2, Db, Dhl4	DWARFBAMBOO SHOOT 1	Dominant lethal-b, Dominant hybrid lethal-4				Dominant lethal. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060229			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
73	DIA1	Dia1(t)*, Dia1	DIAPHORASE 1	Diaphorase1, Diaphorase 1, Diaphorase-1	DIAPHORASE 1	Dia1-1(t), Dia1-2(t)		L(ST).	 Biochemical character			GR:0060231			GO:0004148 - dihydrolipoyl dehydrogenase activity, GO:0003959 - NADPH dehydrogenase activity		
74	DIA2	Dia2(t)*, Dia2	DIAPHORASE 2	Diaphorase2, Diaphorase 2, Diaphorase-2	DIAPHORASE 2	Dia2-1(t), Dia2-2(t)		L(ST).	 Biochemical character			GR:0060232			GO:0003959 - NADPH dehydrogenase activity, GO:0004148 - dihydrolipoyl dehydrogenase activity		
75	DN2	Dn2	DENSE PANICLE 2	Dense panicle2, Dense panicle 2, Dense panicle-2				PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060236			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000484 - seed shape, TO:0000339 - stem thickness, TO:0000576 - stem length	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009047 - stem 
76	DN3	dn3	DENSE PANICLE 3	dense panicle3, dense panicle 3, dense panicle-3				Dense panicle caused by the increased number and decreased length of primary rachilla. This mutant bears small panicles less than 5cm with often malformed spikelets like those having long empty glumes, and produces a few adventitious roots at the base of ... PO:0009039; glume ; PO:0009049; inflorescence ; PO:0009037; lemma ; PO:0009038; palea. GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060237			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000089 - panicle type, TO:0000040 - panicle length, TO:0000142 - secondary branching of inflorescence, TO:0000052 - primary branching of inflorescence	PO:0009039 - glume , PO:0009038 - palea , PO:0009049 - inflorescence , PO:0009037 - lemma 
77	DS1	ds1	DESYNAPSIS 1	desynapsis1, desynapsis 1, desynapsis-1					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060249			GO:0007135 - meiosis II		
78	DS10	ds10(t), ds10	DESYNAPSIS 10	desynapsis10, desynapsis 10, desynapsis-10					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060258			GO:0007135 - meiosis II		
79	DS11	ds11(t), ds11	DESYNAPSIS 11	desynapsis11, desynapsis 11, desynapsis-11					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060259			GO:0007135 - meiosis II		
80	DS2	ds2(t), ds2	DESYNAPSIS 2	desynapsis2, desynapsis 2, desynapsis-2					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060250			GO:0007135 - meiosis II		
81	DS4	ds4(t), ds4	DESYNAPSIS 4	desynapsis4, desynapsis 4, desynapsis-4					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060252			GO:0007135 - meiosis II		
82	DS5	ds5(t), ds5	DESYNAPSIS 5	desynapsis5, desynapsis 5, desynapsis-5					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060253			GO:0007135 - meiosis II		
83	DS6	ds6(t), ds6	DESYNAPSIS 6	desynapsis6, desynapsis 6, desynapsis-6					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060254			GO:0007135 - meiosis II		
84	DS7	ds7(t), ds7	DESYNAPSIS 7	desynapsis7, desynapsis 7, desynapsis-7					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060255			GO:0007135 - meiosis II		
85	DS8	ds8(t), ds8	DESYNAPSIS 8	desynapsis8, desynapsis 8, desynapsis-8					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060256			GO:0007135 - meiosis II		
86	DS9	ds9(t), ds9	DESYNAPSIS 9	desynapsis9, desynapsis 9, desynapsis-9					 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060257			GO:0007135 - meiosis II		
87	DU2	du2	DULL ENDOSPERM 2	dull endosperm2, dull endosperm 2, dull endosperm-2		du2-2, du-2		low amylose content mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060262			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
88	DU3	du3, OsCBP20, OsCBP20/du3, CBP20	DULL ENDOSPERM 3	dull endosperm3, dull endosperm 3, dull endosperm-3, dull 3, cap-binding protein 20			2	Q84L14. low amylose content mutant. OsCBC (cap-binding complex ) subunit. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os02g0612300	LOC_Os02g39890.1, LOC_Os02g39890.2	GR:0060263			GO:0005976 - polysaccharide metabolic process, GO:0006370 - mRNA capping, GO:0000166 - nucleotide binding, GO:0000339 - RNA cap binding, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0016607 - nuclear speck, GO:0005846 - nuclear cap binding complex, GO:0005654 - nucleoplasm, GO:0009568 - amyloplast starch grain, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0031053 - primary microRNA processing, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000196 - amylose content, TO:0000429 - salt sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000432 - temperature response trait, TO:0000105 - dull endosperm, TO:0000615 - abscisic acid sensitivity	PO:0009089 - endosperm , PO:0001170 - seed development stage 
89	DU5	du5	DULL ENDOSPERM 5	dull endosperm5, dull endosperm 5, dull endosperm-5				dull endosperm, low amylose content. low amylose content mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060265			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
90	DW2	dw2(fh2), dw2, fh2, FH2, OsFH2	DEEP WATER TOLERANCE 2	deep water tolerance2, deep water tolerance-2, Formin-like protein 2, formin homology 2, forming family protein 2, FH2 protein 2, FH2 domain protein 2	FORMIN-LIKE PROTEIN 2		4	LOC_Os04g38810. A2XUA1(indica). Q7XUV2(japonica). PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os04g0461800	LOC_Os04g38810.1	GR:0060273			GO:0030036 - actin cytoskeleton organization, GO:0003779 - actin binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016020 - membrane, GO:0009413 - response to flooding, GO:0016021 - integral to membrane	TO:0000103 - deepwater stress, TO:0000170 - elongation ability	PO:0000003 - whole plant 
91	DW3	dw3	DEEP WATER TOLERANCE 3	deep water tolerance3, deep water tolerance 3, deep water tolerance-3				Elongation of internodes in responce to deepwater. PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance			GR:0060274			GO:0009413 - response to flooding	TO:0000170 - elongation ability, TO:0000103 - deepwater stress	PO:0000003 - whole plant 
92	E2		HEADING DATE 2	Heading date2, Heading date 2, Heading date-2				PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060276			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading	PO:0009049 - inflorescence 
93	EF2	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2	EARLINESS 2	late heading2, late heading 2, late heading-2			9	14 days later in heading than the original strain, Taichung 65 (T65). [RGN12:22] PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060279			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
94	EF3	ef3(t), ef3	EARLINESS 3	late heading3, late heading 3, late heading-3				10 days later in heading than the original strain, Taichung 65 (T65). [RGN12:22] PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060280			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading	PO:0009049 - inflorescence 
95	EF4	ef4, ef4(t)	EARLINESS 4	late heading4, late heading 4, late heading-4			3	14 days later in heading than the original strain, Taichung 65 (T65). [RGN12:22] PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060281			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading	PO:0009049 - inflorescence 
96	EL	El*, El	FLOATING HABIT	Floating habit, Floating habit (elongation ability)				complementary with sd1 or d18-k. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060289			GO:0009685 - gibberellin metabolic process, GO:0009413 - response to flooding	TO:0000103 - deepwater stress, TO:0000145 - internode length, TO:0000170 - elongation ability	PO:0005005 - shoot internode , PO:0009011 - plant structure , PO:0000003 - whole plant 
97	EML1	eml1	EMBRYOLESS 1	embryoless1					 Seed - Morphological traits - Embryo						GO:0009266 - response to temperature stimulus, GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development		
98	EML1	eml1*, eml1	EMBRYOLESS 1	embryoless1, embryoless 1, embryoless-1				PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060292			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait, TO:0000432 - temperature response trait	PO:0009009 - plant embryo 
99	ENL1	enl1	ENDOSPERMLESS 1	endospermless1, endospermless 1, endospermless-1, SNF2 family helicase ENL1		enl1-1, enl1-2	4	PO:0009009; embryo ; PO:0009089; endosperm. orthologous to human Plk1-Interacting Checkpoint Helicase (PICH). LOC_Os04g59624. SNF2 family helicase.	 Seed - Morphological traits - Endosperm	Os04g0692750	LOC_Os04g59624.1, LOC_Os04g59624.2, LOC_Os04g59624.3	GR:0060295			GO:0005737 - cytoplasm, GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development, GO:0009960 - endosperm development, GO:0007067 - mitosis, GO:0000280 - nuclear division, GO:0005634 - nucleus, GO:0007059 - chromosome segregation	TO:0000587 - endosperm quality, TO:0000113 - giant embryo, TO:0000064 - embryo related trait, TO:0000231 - endospermless	PO:0007633 - endosperm development stage , PO:0009089 - endosperm , PO:0009009 - plant embryo 
100	ENL1	enl1*	ENDOSPERMLESS 1	endospermless1					 Seed - Morphological traits - Endosperm						GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis		
101	ESBA	Esba*, Esb1, Esba	EXTRA SCHLENCHYMATOUS BAND IN STEM A	Extra schlenchymatous band in stem-a, Extra schlenchymatous band in stem-1				Complementary with Esb-b. An extra sclerencymatous band is found in the stem of this mutant.[454] Extra schlenchymatous band in stem. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060299			GO:0030154 - cell differentiation	TO:0000361 - stem anatomy and morphology trait	PO:0009047 - stem 
102	ESBB	Esbb*, Esb2, Esbb	EXTRA SCHLENCHYMATOUS BAND IN STEM B	Extra schlenchymatous band in stem-b, Extra schlenchymatous band in stem-2				Complementary with Esb-a. An extra sclerenchymatous band is found in the stem of this mutant. [454] Extra schlenchymatous band in stem. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060300			GO:0030154 - cell differentiation	TO:0000361 - stem anatomy and morphology trait	PO:0009047 - stem 
103	ESP4	Esp4, 10/16-H	ENDOSPERM STORAGE PROTEIN 4	Endosperm storage protein4, Endosperm storage protein 4, regulatory gene for PB-I., Endosperm storage protein-4	ENDOSPERM STORAGE PROTEIN 4			PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060304			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
104	EST11	Est11(t), Est11	ESTERASE 11	Esterase11, Esterase 11, Esterase-11	ESTERASE 11	Est11-0(t), Est11-1(t), Est11-2(t), Est11-3(t)		Dimers. The band migrates faster than that of Est2 and slower than that of Est12, expressed as a double band. No variant in Asian cultivars.	 Biochemical character			GR:0060315			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
105	EST4	Est4	ESTERASE 4	Esterase4, Esterase 4, Esterase-4	ESTERASE 4	Est4-1, Est4-2		L(AG).	 Biochemical character			GR:0060308			GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
106	EST6	Est6	ESTERASE 6	Esterase6, Esterase 6, Esterase-6	ESTERASE 6	Est6-0, Est6-1.		P(ST). Differential allel frequencies between Indica and Japonica types.	 Biochemical character			GR:0060310			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
107	EST8	Est8	ESTERASE 8	Esterase8, Esterase 8, Esterase-8	ESTERASE 8	Est8-0, Est8-1.		P(ST).	 Biochemical character			GR:0060312			GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
108	FES1	fes1	FEMALE STERILE 1	female sterile1, female sterile 1, female sterile-1				Its pollen function is normal, but due to a low rate of embryosac formation fes1/fes1 results in a semi-sterility. In the double recessive homozyote with fes2/fes2 the seed setting becomes as low as 2 to 5%. This sterility is transmitted to the next generation. PO:0009062; gynoecium. 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060325			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
109	FES2	fes2	FEMALE STERILE 2	female sterile2, female sterile 2, female sterile-2				Its pollen function is normal, but due to a low rate of embryosac formation fes2/fes2 results in a semi-sterility. In the double recessive homozyote with fes1/fes1 the seed setting becomes as low as 2 to 5%. This sterility is transmitted to the next generation. PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060326			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
110	FES3	Fes3(Fes2), Fs, Fes3	FEMALE STERILE 3	Female sterile3, Female sterile 3, Female sterile-3				PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060327			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
111	FON1	OsFON1, fon1, OsRLCK219, RLCK219	FLORAL ORGAN NUMBER 1	floral organ number1, floral organ number 1, floral organ number-1, CLV1 orthologue, Receptor-like Cytoplasmic Kinase 219	RECEPTOR-LIKE CYTOPLASMIC KINASE 219	fon1-1, fon1-2, fon1-3, fon1-5	6	AB182388. CLV1-like LRR receptor kinase. PO:0009036; lodicule ; PO:0006455; carpel (sensu Poaceae) ; PO:0000230; inflorescence meristem ; PO:0000229; floral meristem ; PO:0006441; stamen (sensu Poaceae) ; PO:0009046; flower. GRO:0007139; A-vegetative stage ; GRO:0007157; panicle development. LOC_Os06g50340. a rice ortholog of Arabidopsis CLV1/HAR1/NARK. KC609110-KC609119 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Seed	Os06g0717200	LOC_Os06g50340.1	GR:0060333			GO:0009934 - regulation of meristem structural organization, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0010080 - regulation of floral meristem growth, GO:0048833 - specification of floral organ number, GO:0009887 - organ morphogenesis, GO:0009888 - tissue development, GO:0016020 - membrane, GO:0032940 - secretion by cell, GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0048316 - seed development, GO:0030154 - cell differentiation, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004702 - receptor signaling protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000223 - pistil anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000346 - tiller number, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000145 - internode length, TO:0000249 - leaf senescence, TO:0000225 - stamen number, TO:0000184 - seed anatomy and morphology trait, TO:0000499 - flower anatomy and morphology trait, TO:0000052 - primary branching of inflorescence	PO:0009049 - inflorescence , PO:0000230 - inflorescence meristem , PO:0009046 - flower , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009036 - lodicule , PO:0009030 - carpel , PO:0009029 - stamen , PO:0000229 - flower meristem , PO:0001083 - inflorescence development stage 
113	FON2	fon2, OsFON2, FON4, OsFON4, FON2/FON4, TG1	FLORAL ORGAN NUMBER 2	floral organ number2, floral organ number 2, floral organ number-2, floral organ number4, floral organ number 4, twin-grain1, twin-grain 1		fon2, fon2-1, fon2-2, fon2-3, fon4, fon4-1, fon4-2, fon4-3, tg1	11	PO:0009046; flower. AB245090. A0MH06. DQ836359. a Putative Ortholog of Arabidopsis CLAVATA3. OsFON4 in Bakshi et al. 2017, Xu et al. 2019. an Arabidopsis TOPLESS (TPL)-like transcriptional corepressor. GO:1902455: negative regulation of stem cell population maintenance.	 Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0595400	LOC_Os11g38270.1	GR:0060334			GO:0009887 - organ morphogenesis, GO:0007275 - multicellular organismal development, GO:0005576 - extracellular region, GO:0019827 - stem cell maintenance, GO:0009888 - tissue development, GO:0030154 - cell differentiation	TO:0000445 - seed number, TO:0000499 - flower anatomy and morphology trait, TO:0002759 - grain number, TO:0006038 - floral organ number	PO:0009046 - flower 
115	FOR1	for1*, for1	FLOWER ORGANIZATION 1	flower organization1, flower organization 1, flower organization-1		for1-1, for1-2		PO:0009046; flower.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060335			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower 
116	FSC	Fsc*(Fc), Fc, Fsc	FUSCOID CELLS ATTACHED TO VASCULAR BUNDLES	Fuscoid cells attached to vascular bundles				Fuscoid cells are those with big vacuoles occurring on either side of the vascular bandle in the leaf balde. They are commonly found in bamboo but are rare in rice. [454] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060338			GO:0007275 - multicellular organismal development	TO:0000361 - stem anatomy and morphology trait	PO:0009047 - stem 
117	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7	FRIZZY PANICLE	frizzy panicle, BRANCHED SILKLESS 1 homolog, ethylene response factor 78, APETALA2/ethylene-responsive element binding protein 133, BRANCHED FLORETLESS 1, FRIZZLE PANICLE, Small Grain and Dense Panicle 7		fzp-1, fzp-2, fzp-3, fzp-4, fzp-5, fzp-6, fzp-7, fzp-FM44, fzp-KH1, fzp-KH56, fzp-8, fzp-9, fzp-10, fzp-g, bfl1, fzp-11, fzp-12, fzp-13, fzp-14	7	Frizzy plants produce no seed, being propagated as heterozygotes.  Development of the rachis branches appears to be normal, but small branches continue to be formed instead of spikelets.  These branches appear to produce multiple rachillas. [238] fzp is located on chromosome 7 flanked by markers R1789 bs 3817R. ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR.  AB103120. AB568302. qSBN7 (SECONDARY BRANCH NUMBER7)  is a novel allele of FZP (Wang et al. 2020). TO:0000975: grain width. PO:0030123: panicle inflorescence. TO:0000847: panicle inflorescence morphology trait. GO:1902510: regulation of apoptotic DNA fragmentation. TO:1000023: lemma morphology trait. TO:1000024: palea morphology trait. TO:0000978: glume shape. GO:0010093: specification of floral organ identity. 	 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0669500	LOC_Os07g47330.1	GR:0060339			GO:0030307 - positive regulation of cell growth, GO:0045449 - regulation of transcription, GO:0010229 - inflorescence development, GO:0007275 - multicellular organismal development, GO:0008284 - positive regulation of cell proliferation, GO:0010093 - specification of floral organ identity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0010582 - floral meristem determinacy, GO:0048449 - floral organ formation, GO:0006351 - transcription, DNA-dependent, GO:0009690 - cytokinin metabolic process, GO:0010073 - meristem maintenance, GO:0010074 - maintenance of meristem identity, GO:0010600 - regulation of auxin biosynthetic process, GO:0043067 - regulation of programmed cell death, GO:0048497 - maintenance of floral organ identity	TO:0000240 - sterile lemma length, TO:0000447 - filled grain number, TO:0000262 - panicle shape, TO:0002759 - grain number, TO:0000650 - lemma length, TO:0000605 - hydrogen peroxide content, TO:0000472 - vascular bundle number, TO:0000734 - grain length, TO:0002672 - auxin content, TO:0000657 - spikelet anatomy and morphology trait, TO:0000557 - secondary branch number, TO:0000382 - 1000-seed weight, TO:0000449 - grain yield per plant, TO:0000396 - grain yield, TO:0000621 - inflorescence development trait, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000050 - inflorescence branching, TO:0000592 - 1000-dehulled grain weight, TO:0000456 - spikelet number, TO:0000397 - grain size, TO:0002660 - cytokinin content, TO:0000499 - flower anatomy and morphology trait, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009040 - sterile lemma , PO:0009051 - spikelet , PO:0001047 - lemma development stage , PO:0009013 - portion of meristem tissue , PO:0009037 - lemma , PO:0009038 - palea , PO:0007602 - floral organ primordium development stage , PO:0009046 - flower 
118	G2	G2(Gm, Gl), Gl, Gm	LONG STERILE LEMMAS 2	Long sterile lemmas2, Long sterile lemmas 2, Long sterile lemmas-2				Steril lemmas grow long as same as lemma. Incomplete dominance. PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060341			GO:0007275 - multicellular organismal development	TO:0000240 - sterile lemma length	PO:0009037 - lemma 
119	G6PD1	G6pd1(t)*, G6pd1	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 1	Glucose-6-phosphate dehydrogenase1, Glucose-6-phosphate dehydrogenase 1, Glucose-6-phosphate dehydrogenase-1	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 1				 Biochemical character			GR:0060342			GO:0004345 - glucose-6-phosphate dehydrogenase activity		
121	GL2	gl2	GLABROUS LEAF AND HULL 2	glabrous leaf and hull2, glabrous leaf and hull 2, glabrous leaf and hull-2				PO:0009038; palea ; PO:0020039; leaf lamina ; PO:0009037; lemma.	 Vegetative organ - Leaf			GR:0060369			GO:0030154 - cell differentiation	TO:0000417 - lemma and palea pubescence,  - palea pubescence, TO:0000055 - leaf lamina pubescence	PO:0009037 - lemma , PO:0009038 - palea , PO:0020039 - leaf lamina 
122	GLC	glc	GEL CONSISTENCY	gel consistency(hard), gel consistency		glc-a(medium), glc-b(soft)		The differences between hard and soft, hard and medium and soft gel consistency are under monogenic control. Multiple allels at glc locus: glc+ (hard), glc-a (medium) and glc-b (soft). PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060371			GO:0045735 - nutrient reservoir activity	TO:0000211 - gel consistency	PO:0009010 - seed 
123	GLE1	gle1*. gle1	GLOBULAR EMBRYO 1	globular embryo1, globular embryo 1, globular embryo-1				This mutant does not differentiate any embryonic organs but stays in a globular morphology even fully matured. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060372			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
124	GLE2	gle2*, gle2	GLOBULAR EMBRYO 2	globular embryo2, globular embryo 2, globular embryo-2		gle2-1, gle2-2		This mutant does not differentiate any embryonic organs, but stays in globular morphology even fully matured. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060373			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
125	GLE3	gle3*, gle3	GLOBULAR EMBRYO 3	globular embryo3, globular embryo 3, globular embryo-3				This mutant does not differentiate any embryonic organs, but stays in a globular morphology even fully matured. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060374			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
126	GLH1	Glh1	GREEN LEAFHOPPER RESISTANCE 1	Green leafhopper resistance1, Green leafhopper resistance 1, Green leafhopper resistance-1				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060376			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
127	GLH2	Glh2	GREEN LEAFHOPPER RESISTANCE 2	Green leafhopper resistance2, Green leafhopper resistance 2, Green leafhopper resistance-2				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060377			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
128	GLH4	glh4	GREEN LEAFHOPPER RESISTANCE 4	green leafhopper resistance4, green leafhopper resistance 4, green leafhopper resistance-4				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060379			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
129	GLH5	Glh5	GREEN LEAFHOPPER RESISTANCE 5	Green leafhopper resistance5, Green leafhopper resistance 5, Green leafhopper resistance-5				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060380			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
130	GLH7	Glh7	GREEN LEAFHOPPER RESISTANCE 7	Green leafhopper resistance7, Green leafhopper resistance 7, Green leafhopper resistance-7				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060382			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
131	GLU2	Glu2*(Gt1), Gt1, Glu2	GLUTELIN 2	Rice glutelin2, Rice glutelin 2, Rice glutelin-2	GLUTELIN 2			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060395			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
132	GLU3	Glu3*(Gt3), Gt3, Glu3	GLUTELIN 3	Rice glutelin3, Rice glutelin 3, Rice glutelin-3	GLUTELIN 3			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060396			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
133	GLU4	Glu4*, Glu4, OsGLU4	GLUTELIN 4	Rice glutelin4, Rice glutelin-4, glutelin-4	GLUTELIN 4			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060397			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
134	GLU5	Glu5*, Glu5, OsGLU5	GLUTELIN 5	Rice glutelin5, Rice glutelin 5, Rice glutelin-5, glutelin-5	GLUTELIN 5			PO:0009010; seed. GRO:0007047; 02-seedling ; GRO:0007235; 1.3-coleoptile emergence stage.	 Seed - Physiological traits - Storage substances			GR:0060398			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
135	GLU6	Glu6*(GluA4), Glu6, GluA4, GluA-4	GLUTELIN 6	Rice glutelin6, Rice glutelin 6, Rice glutelin-6	GLUTELIN 6			pseudogene. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060399			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
136	GLU7	Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7	GLUTELIN 7	Rice glutelin7, Rice glutelin-7, Glutelin type-B 2 precursor, Glutelin type-B 2, Glutelin type-B 7, Glutelin type-B 2 acidic chain, Glutelin type-B 2 basic chain	GLUTELIN 7		2	Q02897. AY427570 (promoter). PO:0009010; seed. GluB-2 in Mitsukawa et al. 1998, Wang et al. 2020. X54192.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os02g0249600	LOC_Os02g15150.1, LOC_Os02g15150.2				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
137	GLUA1	Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16	GLUTELIN SUBFAMILY A1 FROM WILD RICE SPECIES	Glutelin subfamily A1 from wild rice species, Glutelin subfamily A-1 from wild rice species, Glutelin type-A 1 precursor, Glutelin type-A 1, Glutelin type I, Glutelin type-A 1 acidic chain, Glutelin type-A 1 basic chain, Rice glutelin-19, glutelin-19, endosperm-specific gene 16	GLUTELIN SUBFAMILY A1 FROM WILD RICE SPECIES		1	M17513. X52153 (promoter sequence). EU264102 (promoter sequence). P07728. EF122458.	 Seed - Physiological traits - Storage substances	Os01g0762500	LOC_Os01g55690.1	GR:0060408			GO:0045735 - nutrient reservoir activity, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000490 - protein composition related trait	PO:0009010 - seed 
138	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137	GLUTELIN SUBFAMILY A2 FROM WILD RICE SPECIES	Glutelin subfamily A2 from wild rice species, Glutelin type-A 2 precursor, Glutelin type-A 2, Glutelin type II, Glutelin type-A 2 acidic chain, Glutelin type-A 2 basic chain, Glutelin subfamily A-2 from wild rice species, Rice glutelin-20, glutelin-20, endosperm-specific gene 137	GLUTELIN SUBFAMILY A2 FROM WILD RICE SPECIES		10	Y00687, D00584. X06149. EU264103 (promoter sequence). P07730. The gene LOC_Os10g26060 encoding glutelin type-A2 precursor (referred to hereafter as OsGluA2) was responsible to qGPC-10 (Yang et al. 2019).	 Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance	Os10g0400200	LOC_Os10g26060.1	GR:0060409			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity, GO:0009651 - response to salt stress	TO:0000490 - protein composition related trait, TO:0000598 - protein content, TO:0000162 - seed quality, TO:0006001 - salt tolerance	PO:0006220 - central endosperm , PO:0009010 - seed , PO:0009089 - endosperm 
139	GLUA3	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3	GLUTELIN SUBFAMILY A3 FROM WILD RICE SPECIES	Glutelin subfamily A3 from wild rice species, Glutelin type-A 3 precursor, Glutelin type-A 3, Glutelin type-A 3 acidic chain, Glutelin type-A 3 basic chain, Rice glutelin-21, glutelin-21, endosperm-specific gene 47, glutelin 3	GLUTELIN SUBFAMILY A3 FROM WILD RICE SPECIES		3	X54313. Q09151. EU264104 (promoter sequence). GLU3 in Xu et al. 2016.	 Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os03g0427300	LOC_Os03g31360.1	GR:0060410			GO:0009791 - post-embryonic development, GO:0009651 - response to salt stress, GO:0000003 - reproduction, GO:0048316 - seed development, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0045735 - nutrient reservoir activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009415 - response to water	TO:0000653 - seed development trait, TO:0000237 - water stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000490 - protein composition related trait, TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0001170 - seed development stage , PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage 
140	GM1	Gm1, Gm-1, GM-1	GALL MIDGE RESISTANCE 1	Gall midge resistance1, Gall midge resistance 1, Gall midge resistance-1			9	Gall midge resistance gene, located on chromosome 9 between markers RM444 and RM219. PO:0009011; plant structure ; PO:0000003; whole plant. Gm1 is mapped within 0.18 Mb region on chromosome 9 between the SSR markers RM23941 and RM23956 (Yasala et al. 2012).	 Tolerance and resistance - Insect resistance			GR:0060417			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
141	GM3	gm3*, gm3	GALL MIDGE RESISTANCE 3	gall midge resistance3, gall midge resistance 3, gall midge resistance-3			4	PO:0009011; plant structure ; PO:0000003; whole plant. Two SSR markers RM17473 and RM17480 located on chromosome 4L are linked to gm3 at a genetic distance of ~ 3.2 cM and ~ 2.0 cM, respectively (Sama et al. 2010).	 Tolerance and resistance - Insect resistance			GR:0060419			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
142	GM4	Gm4(t)*, Gm4(t), Gm4, Gm4t	GALL MIDGE RESISTANCE 4	Gall midge resistance4(t), Gall midge resistance4, Gall midge resistance 4, Gall midge resistance-4			8	Gall midge resistance gene located on the short arm of chromosome 8. PO:0009011; plant structure ; PO:0000003; whole plant. Gm4t mapped onto chromosome 8 between markers R1813 and S1633B (Mohan et al. 1997). Gm4 is mapped within 0.33 Mb region on chromosome 8 between the SSR markers RM22551 and RM22562 (Yasala et al. 2012).	 Tolerance and resistance - Insect resistance			GR:0060420			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
143	GRH2	Grh2	GREEN RICE LEAFHOPPER RESISTANCE 2	Green rice leafhopper resistance2			11		 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	
144	GRH3	Grh3*, Grh3, Grh3(t)	GREEN RICE LEAFHOPPER RESISTANCE 3	Green rice leafhopper resistance3, Green rice leafhopper resistance 3, Green rice leafhopper resistance-3			6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060434			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
145	GSV	Gsv(Gs), Gs, Gsv	GRASSY STUNT RESISTANCE	Grassy stunt resistance				Resistant to the grassy stunt, a viral disease transmitted by brown planthopper. Infested plants become sterile. One of the most serious viral disease in the tropical Asia. PO:0009006; shoot.	 Tolerance and resistance - Disease resistance			GR:0060436			GO:0009615 - response to virus	TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000127 - rice grassy stunt virus-1 resistance	PO:0009006 - shoot system 
146	GT	Gt(t)*, Gt	HIGH GELATINIZATION TEMPERATURE	High gelatinization temperature				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Taste			GR:0060437			GO:0016051 - carbohydrate biosynthetic process	TO:0000462 - gelatinization temperature	PO:0009089 - endosperm 
147	H(T)*	H(t)*, Hcr	HARDNESS OF COOKED RICE	Hardness of cooked rice				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Taste			GR:0060438			GO:0016051 - carbohydrate biosynthetic process	TO:0000489 - carbohydrate composition related trait, TO:0000587 - endosperm quality	PO:0009089 - endosperm 
148	HCA1	hca1	HYBRID CHLOROSIS-A	hybrid chlorosis-a		hca1-1, Hca1-2	12	complementary. hybrid chlorosis. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060440			GO:0048544 - recognition of pollen, GO:0015995 - chlorophyll biosynthetic process	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
149	HCA2	hca2	HYBRID CHLOROSIS-A	hybrid chlorosis-a		hca2-1, Hca2-2	11	hybrid chlorosis. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060441			GO:0009873 - ethylene mediated signaling pathway, GO:0015995 - chlorophyll biosynthetic process	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
150	HE	He	HELMINTHOSPORIUM ORYZAE RESISTANCE	Helminthosporium oryzae resistance				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Disease resistance			GR:0060445			GO:0009620 - response to fungus	TO:0000356 - brown spot disease resistance, TO:0000323 - stem rot disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
151	HLB	Hlb, Hl2	HAIRY LEAF-B	Hairy leaf-b, Hairy leaf-2				Complementary with Hla. Thick and long hairs on leaves. Pleiotropic effects on hair length of panicle branches but no remarkable effect in pubescence of floral glumes. [299] PO:0020039; leaf lamina.	 Vegetative organ - Leaf			GR:0060448			GO:0030154 - cell differentiation	TO:0000055 - leaf lamina pubescence	PO:0020039 - leaf lamina 
152	HPR1	hpr1	HYDROXYPROLINE RESISTANCE1	hydroxyproline resistance1, hydroxyproline resistance 1, hydroxyproline resistance-1				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060450			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
153	HPR2(T)	hpr2(t), hpr2	HYDROXYPROLINE RESISTANCE2	hydroxyproline resistance2, hydroxyproline resistance 2, hydroxyproline resistance-2				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060451			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0009011 - plant structure , PO:0000003 - whole plant 
154	HPR3(T)	hpr3(t), hpr3	HYDROXYPROLINE RESISTANCE3	hydroxyproline resistance3, hydroxyproline resistance 3, hydroxyproline resistance-3				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060452			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0009011 - plant structure , PO:0000003 - whole plant 
155	HWA1	Hwa1(L1a), L-1-a(La), L1a, Hwa1	HYBRID WEAKNESS A1	Hybrid weakness a1, Hybrid weakness (lethal)-a1		HWA1-1, hwa1-2	11	This gene causes hybrid lethal complementarily with Hwa2. PO:0009046; flower. Germplasm:P.T.B.10, HWA1 gene is mapped between RM27051 and RM27068.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060455		90.0	GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
156	HWA2	Hwa2(L1b), L-1-b(Lb), L1b, Hwa2	HYBRID WEAKNESS A2	Hybrid weakness a2, Hybrid weakness (lethal)-a2		HWA2-1, hwa2-2	11	This gene causes hybrid lethal complementarily with Hwa1. PO:0009046; flower. Germplasm:P.T.B.7, HWA2 gene is mapped between RM27051 and RM27068.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060456		90.0	GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
157	HWB1	hwb1(w'a), w'a, hwb1	HYBRID WEAKNESS B1	hybrid weakness b1, f2 weakness-b1				This gene causes F1 weakness complementarily with hwb2. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060457			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
158	HWB2	hwb2(w'b), w'b, hwb2	HYBRID WEAKNESS B2	hybrid weakness b2, f2 weakness-b2				This gene causes F1 weakness complementarily with hwb1. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060458			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
159	HWC1	Hwc1(L2a), L-2-a, Lr1, Hwc-1, L2a	HYBRID WEAKNESS C1	Hybrid weakness c1, Hybrid weakness (lethal)-c1		Hwc1-1, hwc1-2	1	This gene causes hybrid lethal complementarily with Hwc2. PO:0009046; flower.So far, Jamaica has been the only cultivar carrying the Hwc1-1 allele. 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060459			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
160	HWC2	Hwc2(L2b), L-2-b, Lr2, Hwc-2, L2b, Hwc2	HYBRID WEAKNESS C2	Hybrid weakness c2, Hybrid weakness (lethal)-c2		Hwc2-1, hwc2-2	4	This gene causes hybrid lethal complementarily with Hwc1. PO:0009046; flower.Many Japanese cultivars carry Hwc2-1 allele. 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060460			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
161	IANA	IAna*	SUPPRESSOR FOR AWN A	Suppressor for awn, Suppressor for awn-a				PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060464			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
162	IANB	IAnb*	SUPPRESSOR FOR AWN B	Suppressor for awn, Suppressor for awn-b				PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060465			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
163	IBPH1	IBph1	INHIBITOR FOR BPH 1	Inhibitor for Bph1				PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060467			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
164	IC	ic*, Ic	IRON DEFICIENCY CHLOROSIS	iron deficiency chlorosis, Iron deficiency chlorosis tolerance				Susceptible to iron deficiency, showing chlorosis. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060468			GO:0009628 - response to abiotic stimulus	TO:0000224 - iron sensitivity	PO:0009011 - plant structure , PO:0000003 - whole plant 
165	IFR	Ifr, Rf16, Ifr1	INDUCTION OF FERTILITY	Induction of fertility restoration, Pollen fertility restore-16, instability of fertility restoration 1				Fertile revertant for [cms-bo] cytoplasm. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060470			GO:0007275 - multicellular organismal development	TO:0000498 - female fertility restoration trait, TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
166	IPL3	IPl3	INHIBITOR FOR PURPLE LEAF 3	Inhibitor for purple leaf3, Inhibitor for purple leaf 3, Inhibitor for purple leaf-3				Anthocyanin pigmentation on leaf blade and sheath by Plw is inhibited by IPl3 in a duplicate or triplicate action with IPl1 or IPl2. PO:0020104; leaf sheath ; PO:0006012; leaf collar ; PO:0005005; shoot internode.	 Coloration - Anthocyanin			GR:0060476			GO:0009812 - flavonoid metabolic process	TO:0000426 - internode color, TO:0000364 - leaf collar color, TO:0000367 - basal leaf sheath color, TO:0000299 - leaf lamina color	PO:0006012 - leaf collar , PO:0005005 - shoot internode , PO:0020104 - leaf sheath 
167	IPL5	IPl5	INHIBITOR FOR PURPLE PERICARP 5	Inhibitor for purple pericarp-5				Anthocyanin pigmentation on caryopsis by Plw is inhibited by IPl5 in duplicate action with IPl4. Inhibitor for purple pericarp. PO:0009010; seed.	 Coloration - Anthocyanin			GR:0060478			GO:0009812 - flavonoid metabolic process	TO:0000487 - endosperm color, TO:0000190 - seed coat color	PO:0009010 - seed 
168	IPL6	IPl6	INHIBITOR FOR PURPLE LEAF 6	Inhibitor for purple leaf (Pl-i), Inhibitor for purple leaf (Pl.2(Pl-i)), Inhibitor for purple leaf-6				Anthocyanin pigmentation on leaf blade and sheath by Pli is inhibited strongly by IPl6. PO:0009025; leaf.	 Coloration - Anthocyanin			GR:0060479			GO:0009812 - flavonoid metabolic process	TO:0000326 - leaf color, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
169	IPS1	IPs1*, IPs1	INHIBITOR FOR PURPLE STIGMA 1	Inhibitor for purple stigma (Ps1), Inhibitor for purple stigma-1				Inhibitor for purple stigma (Ps1). PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060480			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
170	IPS3	IPs3*, IPs2	INHIBITOR FOR PURPLE STIGMA 3	Inhibitor for purple stigma (Ps3), Inhibitor for purple stigma-2				Inhibitor for purple stigma (Ps3). PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060481			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
171	IPSA	IPsa(IPs1), IPsa, IPs1, Ips3	INHIBITOR FOR PURPLE STIGMA A	Inhibitor for purple stigma-a (Psa), Inhibitor for purple stigma-a, Inhibitor for purple stigma-3				Inhibitor for purple stigma. complementary with IPsb. PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060482			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
172	ISE1	iSe1, i-Se-1	RECESSIVE INHIBITOR FOR PHOTOSENSITIVITY (SE1)	recessive inhibitor for photosensitivity (Se1)				PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060484			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000469 - days to maturity, TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009010 - seed , PO:0009082 - spikelet floret , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
173	ISPR1	ISpr1*, ISpr1	INHIBITOR FOR SPREADING PANICLE 1	Inhibitor for spreading panicle1, Inhibitor for spreading panicle 1, Inhibitor for spreading panicle-1				duplicate gene with ISpr2. Inhibitor for spreading panicle gene Spr-a or Spr-b. [292] PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060485			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
174	ISPR2	ISpr2*, ISpr2	INHIBITOR FOR SPREADING PANICLE 2	Inhibitor for spreading panicle2, Inhibitor for spreading panicle 2, Inhibitor for spreading panicle-2				Duplicate gene with ISpr1. Inhibitor for spreading panicle gene Spr-a or Spr-b. [292] PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060486			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
175	KR1	Kr1*, Kr1	SHORT GRAIN	Short grain				PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060488			GO:0007275 - multicellular organismal development	TO:0000391 - seed size, TO:0000146 - seed length	PO:0009010 - seed 
176	KR2	Kr2*, Kr2	LONG GRAIN	Long grain				PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060489			GO:0007275 - multicellular organismal development	TO:0000391 - seed size, TO:0000146 - seed length	PO:0009010 - seed 
177	LGP	lgp*, lgp	LIGHT GREEN PANICLE AND LEAF	light green panicle and leaf				Light green panicles and leaves. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060498			GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000264 - lemma and palea color, TO:0000495 - chlorophyll content	PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
178	LHD	lhd	LEAFY HEAD	leafy head				Seed stock and clone has been lost. PO:0020122; inflorescence axis. GRO:0007140; B-reproductive stage ; GRO:0007189; panicle stage PA1.	 Reproductive organ - Inflorescence			GR:0060501			GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010228 - vegetative to reproductive phase transition, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000207 - plant height, TO:0000089 - panicle type, TO:0000735 - plastochron	PO:0020122 - inflorescence axis 
179	LKG	Lk g	LONG KERNEL GIMBOUZU	'Gimbozu mutant' long grain				20% longer in grain length compared with the normal type. [163]	 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development	TO:0000146 - seed length	
180	LKI2	lki2	 LONG KERNEL IRAT13 2	IRAT 13' long grain2, IRAT 13' long grain 2, 'IRAT 13' long grain-2				One of the duplicate genes interacting with lki1. [RGN9:3] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060507			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
181	LK1	lk1(t), lkna, lk1	NAGAYAMA 77402A LONG GRAIN 1	Nagayama 77402a long grain1, 'Nagayama 77402a (N179)' long grain, long kernel-1				Long grain with low seed setting and reduced spikelet number. [781] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060503			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
182	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4	LIPOXYGENASE 3	Lipoxygenase3, Lipoxygenase 3, Lipoxygenase-3, Putative lipoxygenase 3, Lipoxygenase 4	LIPOXYGENASE 3		3	recessive gene lox3 causes deficiency of enzyme lipoxygenase-3. Lipoxygenase produces stale flavor during the storage of grain making reduce grain quality seriously. Thai rice cultivar Daw Dam lacks LOX-3 in its seeds. PO:0009010; seed. Q7G794. OsLOX4 in Marla and Singh 2012, Wang et al. 2021. FJ660623, FJ660624. AB571658 (LOX3 pseudogene of cultivar Daw Dam).	 Seed - Physiological traits - Taste	Os03g0700400	LOC_Os03g49350.1	GR:0060509			GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process, GO:0055114 - oxidation reduction, GO:0005506 - iron ion binding	TO:0000488 - seed composition based quality trait	PO:0009010 - seed 
183	LP2	lp2	LONG PALEA 2	long palea2, long palea 2, long palea-2				duplicate gene with lp1. The palea outgrows the lemma. [543] PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060511			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea 
184	LR	lr(t)*, lr	LEAF ROLLING UNDER DROUGHT STRESS	leaf rolling under drought stress				Leaf rolling occurs under drought condition. PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060512			GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0000003 - whole plant 
185	MAL3	Mal3(t)), Mal3	MALATE DEHYDROGENASE(NADP) 3	Malate dehydrogenase(NADP)3	MALATE DEHYDROGENASE(NADP) 3	Mal3-1(t), Mal3-2(t)		Monomers. The band migrates slower than that of Mal1. Active in germinating seed. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060517			GO:0016615 - malate dehydrogenase activity		
186	MAL4	Mal4(t)*, Mal4	MALATE DEHYDROGENASE(NADP) 4	Malate dehydrogenase(NADP)4	MALATE DEHYDROGENASE(NADP) 4	Mal4-0(t), Mal4-1(t), Mal4-2(t), Mal4-3(t)		Monomers. Found in sprouting see. S(PAGE-TC).	 Biochemical character			GR:0060518			GO:0016615 - malate dehydrogenase activity		
187	MDH1	Mdh1	MALATE DEHYDROGENASE(NAD) 1	Malate dehydrogenase(NAD)1, Malate dehydrogenase (NAD) 1, Malate dehydrogenase (NAD)-1	MALATE DEHYDROGENASE(NAD) 1			Dimer. P(ST-H). Interlocus hybrid bands occur. Variant is known lnly in wild taxa. Thermomorphs are known.	 Biochemical character			GR:0060520			GO:0016615 - malate dehydrogenase activity, GO:0030060 - L-malate dehydrogenase activity		
188	MDH2	Mdh2(t)*, Mdh2(t), Mdh2	MALATE DEHYDROGENASE(NAD) 2	Malate dehydrogenase(NAD)2, Malate dehydrogenase (NAD) 2, Malate dehydrogenase (NAD)-2	MALATE DEHYDROGENASE(NAD) 2			P(ST-H). Interlocus hybrid bands occur. Variant is known only in wild taxa.	 Biochemical character			GR:0060521			GO:0016615 - malate dehydrogenase activity		
189	MLS1	mls1	MALFORMED LEMMA 1	malformed lemma1, malformed lemma 1, malformed lemma-1				This gene causes morphological abnormality in lemma, accompanied by low pollen fertility and seed setting. Duplicate gene with mls2. [499] PO:0009051; spikelet ; PO:0009038; palea ; PO:0020091; male gametophyte ; PO:0009037; lemma.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn			GR:0060527			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000436 - spikelet sterility, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea , PO:0009051 - spikelet , PO:0020091 - obsolete microgametophyte 
190	MLS2	mls2	MALFORMED LEMMA 2	malformed lemma2, malformed lemma 2, malformed lemma-2				This gene causes morphological abnormality in lemma, accompanied by low pollen fertility and seed setting. Duplicate gene with mls1. [499] PO:0009051; spikelet ; PO:0009038; palea ; PO:0020091; male gametophyte ; PO:0009037; lemma.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn			GR:0060528			GO:0007275 - multicellular organismal development	TO:0000436 - spikelet sterility, TO:0000053 - pollen sterility, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea , PO:0009051 - spikelet , PO:0020091 - obsolete microgametophyte 
191	MS IR36(T)*	ms IR36(t)*), msIR36, ms66, MS IR36	MALE STERILE(IR36MS)	male sterile(IR36ms), male sterile (IR36ms or Milyang 54ms), male sterile-66, MALE STERILE (IR36MS)				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060557			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
192	MS M54(T)*	ms m54(t)*	MALE STERILE(MILYANG 54MS)	male sterile(Milyang 54ms)					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development	TO:0000437 - male sterility	
193	MS M55(T)*	ms m55(t)*, MS M55, msm55(t)*, ms67, ms55	MALE STERILE(MILYANG 55MS)	male sterile(Milyang 55ms), male sterile (Milyang 55ms), MALE STERILE (MILYANG 55MS), male sterile-67				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060558			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
195	MS11	ms11	MALE STERILE 11	male sterile11, male sterile 11, male sterile-11				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060548			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
196	MS12	ms12	MALE STERILE 12	male sterile12, male sterile 12, male sterile-12				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060549			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
197	MS13	ms13	MALE STERILE 13	male sterile13, male sterile 13, male sterile-13				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060550			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
198	MS15	ms15	MALE STERILE 15	male sterile15, male sterile 15, male sterile-15				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060552			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
199	MS16	ms16	MALE STERILE 16	male sterile16, male sterile 16, male sterile-16				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060553			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
200	MS17	ms17	MALE STERILE 17	male sterile17, male sterile 17, male sterile-17				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060554			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
201	MS18	ms18(t)*, ms18(t), ms18	MALE STERILE 18	male sterile18, male sterile 18, male sterile-18				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060555			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
202	MS19	ms19(t)*, ms19(t), ms19	MALE STERILE 19	male sterile19, male sterile 19, male sterile-19				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061193			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
203	MS2	ms2 (msd), ms2(t)*, ms65, ms2, msd	MALE STERILE 2	male sterile2, male sterile 2, male sterile-65, male sterile-2				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060539			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
205	MS20	ms20(t)*, ms20(t), ms20	MALE STERILE 20	male sterile20, male sterile 20, male sterile-20				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061194			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
206	MS21	ms21(t)*, ms21(t), ms21	MALE STERILE 21	male sterile21, male sterile 21, male sterile-21				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061195			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
207	MS22	ms22(t)*, ms22(t), ms22	MALE STERILE 22	male sterile22, male sterile 22, male sterile-22				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061196			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
208	MS23	ms23(t)*, ms23(t), ms23	MALE STERILE 23	male sterile23, male sterile 23, male sterile-23				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061197			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
209	MS24	ms24(t)* (=ms29), ms24(t), ms24	MALE STERILE 24	male sterile24, male sterile 24, male sterile-24				identical to ms29. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061203			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
210	MS25	ms25(t)*, ms25(t), ms25	MALE STERILE 25	male sterile25, male sterile 25, male sterile-25				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061199			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
211	MS26	ms26(t)*, ms26(t), ms26	MALE STERILE 26	male sterile26, male sterile 26, male sterile-26				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061200			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
212	MS27	ms27(t)*, ms27(t), ms27	MALE STERILE 27	male sterile27, male sterile 27, male sterile-27				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061201			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
213	MS28	ms28(t)*, ms28(t), ms28	MALE STERILE 28	male sterile28, male sterile 28, male sterile-28				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061202			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
214	MS3	ms3(ms1), ms1, ms3	MALE STERILE 3	male sterile3, male sterile 3, male sterile-3				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060540			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
215	MS30	ms30(t)*, ms30	MALE STERILE 30	male sterile30, male sterile 30, male sterile-30				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061204			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
216	MS31	ms31(t)*, ms31	MALE STERILE 31	male sterile31, male sterile 31, male sterile-31				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061205			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
217	MS32	ms32(t)*, ms32	MALE STERILE 32	male sterile32, male sterile 32, male sterile-32				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061206			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
218	MS33	ms33(t)*, ms33	MALE STERILE 33	male sterile33, male sterile 33, male sterile-33				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061207			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
219	MS34	ms34(t)*, ms34	MALE STERILE 34	male sterile34, male sterile 34, male sterile-34				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061208			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
220	MS35	ms35(t)*, ms35	MALE STERILE 35	male sterile35, male sterile 35, male sterile-35				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061209			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
221	MS36	ms36(t)*, ms36	MALE STERILE 36	male sterile36, male sterile 36, male sterile-36				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061210			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
222	MS37	ms37(t)*, ms37	MALE STERILE 37	male sterile37, male sterile 37, male sterile-37				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061211			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
223	MS38	ms38(t)*, ms38	MALE STERILE 38	male sterile38, male sterile 38, male sterile-38				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061212			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
224	MS39	ms39(t)*, ms39	MALE STERILE 39	male sterile39, male sterile 39, male sterile-39				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061213			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
225	MS4	ms4(ms2), ms2, ms4	MALE STERILE 4	male sterile4, male sterile 4, male sterile-4				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060541			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
226	MS40	ms40(t)*, ms40	MALE STERILE 40	male sterile40, male sterile 40, male sterile-40				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061214			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
227	MS41	ms41(t)*, ms41	MALE STERILE 41	male sterile41, male sterile 41, male sterile-41				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061215			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
228	MS42	ms42(t)*, ms42	MALE STERILE 42	male sterile42, male sterile 42, male sterile-42				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061216			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
229	MS43	ms43(t)*, ms43	MALE STERILE 43	male sterile43, male sterile 43, male sterile-43				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061217			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
230	MS44	ms44(t)*, ms44	MALE STERILE 44	male sterile44, male sterile 44, male sterile-44				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061218			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
231	MS45	ms45(t)*, ms45	MALE STERILE 45	male sterile45, male sterile 45, male sterile-45				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061219			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
232	MS46	ms46(t)*, ms46	MALE STERILE 46	male sterile46, male sterile 46, male sterile-46, male sterile-47				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060556			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
233	MS47	ms47(t)*, ms47	MALE STERILE 47	male sterile47, male sterile 47, male sterile-47				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061220			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
234	MS48	ms48(t)*, ms48	MALE STERILE 48	male sterile48, male sterile 48, male sterile-48				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061221			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
235	MS49	ms49(t)*, ms49	MALE STERILE 49	male sterile49, male sterile 49, male sterile-49				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061222			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
236	MS5	ms5(ms3), ms3, ms5	MALE STERILE 5	male sterile5, male sterile 5, male sterile-5				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060542			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
237	MS50	ms50(t)*, ms50	MALE STERILE 50	male sterile50, male sterile 50, male sterile-50				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061223			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
238	MS51	ms51(t)*, ms51	MALE STERILE 51	male sterile51, male sterile 51, male sterile-51				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061224			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
239	MS52	ms52(t)*, ms52	MALE STERILE 52	male sterile52, male sterile 52, male sterile-52				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061225			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
240	MS53	ms53(t)*, ms53, male sterile-53	MALE STERILE 53	male sterile53, male sterile 53, male sterile-53				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061226			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
241	MS54	ms54(t)*, ms54	MALE STERILE 54	male sterile54, male sterile 54, male sterile-54				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061227			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
242	MS55	ms55(t)*, ms55	MALE STERILE 55	male sterile55, male sterile 55, male sterile-55				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061228			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
243	MS56	ms56(t)*, ms56	MALE STERILE 56	male sterile56, male sterile 56, male sterile-56				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061229			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
244	MS57	ms57(t)*, ms57, male sterile-57	MALE STERILE 57	male sterile57, male sterile 57, male sterile-57				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061230			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
245	MS58	ms58(t)*, ms58	MALE STERILE 58	male sterile58, male sterile 58, male sterile-58				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061231			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
246	MS59	ms59(t)*, ms59	MALE STERILE 59	male sterile59, male sterile 59, male sterile-59				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061232			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
247	MS6	ms6(ms4), ms6, ms4	MALE STERILE 6	male sterile6, male sterile 6, male sterile-6				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060543			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
248	MS60	ms60(t)*, ms60	MALE STERILE 60	male sterile60, male sterile 60, male sterile-61, male sterile-60				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061233			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
249	MS61	ms61(t)*, ms61	MALE STERILE 61	male sterile61, male sterile 61, male sterile-62, male sterile-61				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061234			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
250	MS62	ms62(t)*, ms62	MALE STERILE 62	male sterile62, male sterile 62, male sterile-63, male sterile-62				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061235			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
251	MS63	ms63(t)*, oms, ms63	MALE STERILE 63	male sterile63, male sterile 63, open hull male sterile, male sterile-63				PO:0009039; glume ; PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061236			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000474 - glume opening, TO:0000437 - male sterility	PO:0009039 - glume , PO:0009066 - anther 
252	ND	Nd*, Nd	EARLY NODAL DIFFERENTIATION	Early nodal differentiation				Early differentiation of stem nodes was found when 30 day old seedlings werw transplanted in the water-logged fields. PO:0005001; basal axillary shoot ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060571			GO:0007275 - multicellular organismal development	TO:0000103 - deepwater stress, TO:0000285 - nodal tillering	PO:0005001 - basal axillary shoot system , PO:0000003 - whole plant 
253	NP	np*, np	NUDE PANICLE	nude panicle				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060575			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
254	NR1	Nr1*, Nr1	NODAL ROOTING 1	Nodal rooting1, Nodal rooting 1, Nodal rooting-1				Complementary with Nr2. Nodal rooting is considered to be related with floating babit. [552] PO:0003005; nodal root ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060576			GO:0007275 - multicellular organismal development	TO:0000404 - nodal rooting, TO:0000103 - deepwater stress	PO:0003005 - nodal root , PO:0000003 - whole plant 
255	NR2	Nr2*, Nr2	NODAL ROOTING 2	Nodal rooting2, Nodal rooting 2, Nodal rooting-2				Complementary with Nr1. Nodal rooting is considered to be related with floating habit. [552] 003005; nodal root ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060577			GO:0007275 - multicellular organismal development	TO:0000103 - deepwater stress, TO:0000404 - nodal rooting	PO:0000003 - whole plant 
256	OMS	oms	OPEN HULL MALE STERILE	open hull male sterile				Unmatched size of palea and lemma causes an open hull. The anthers are small and white, without viable pollen. Sterile. Even the seed obtained by the pollination with normal plant is small. PO:0009039; glume ; PO:0006318; floret (sensu Poaceae) ; PO:0009025; leaf ; PO:0009010; seed. GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060581			GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process	TO:0000437 - male sterility, TO:0000199 - genic male sterility, TO:0000326 - leaf color, TO:0000392 - sterility or fertility trait, TO:0000474 - glume opening	PO:0009039 - glume , PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009025 - vascular leaf 
257	ORL1	orl1	ORGANLESS 1	organless1, organless 1, organless embryo-1				Despite of embryo enlargement, no differentitation occurs in shoot and radicule. Defferentiation in scutellum is normal. PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060586			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
259	PAP1	pap1	PANICLE PHYTOMER 1	panicle phytomer1, panicle phytomer 1, panicle phytomer-1		pap1-1, pap1-2, pap1-3		Rachis phytomers are strongly affected, especially a severe reduction of rachis internode length and an increase in rachis internode number. Rudimentary and empty glumes are elongated. Expression becomes stronger in the order of pap1-1, pap1-2 and pap1-3. PO:0006321; second order inflorescence branch ; PO:0009038; palea ; PO:0009049; inflorescence ; PO:0009037; lemma.	 Reproductive organ - Inflorescence			GR:0060594			GO:0007275 - multicellular organismal development	TO:0000240 - sterile lemma length, TO:0000089 - panicle type, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000052 - primary branching of inflorescence, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009049 - inflorescence , PO:0009038 - palea , PO:0009037 - lemma , PO:0006321 - primary inflorescence branch 
261	PC	Pc	PURPLE COLEOPTILE	Purple coleoptile				Make coleoptile purple. PO:0020104; leaf sheath.	 Coloration - Anthocyanin			GR:0060597			GO:0009812 - flavonoid metabolic process	TO:0000367 - basal leaf sheath color	PO:0020104 - leaf sheath 
262	PCS	pcs	PENTACHLOROBENZYL ALCOHOL SUSCEPTIBILITY	pentachlorobenzyl alcohol susceptibility				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060598			GO:0009628 - response to abiotic stimulus	TO:0000058 - herbicide sensitivity, TO:0000482 - chemical stress sensitivity	PO:0009011 - plant structure , PO:0000003 - whole plant 
263	PD	Pd, Pd(a), Pd(b)	PENDANT PANICLE	Pendant panicle				The pendant nature of panicle is controlled by three complementary genes (Rao and Misro 1968).	 Reproductive organ - Inflorescence			GR:0060599			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
264	PGI3	Pgi3	PHOSPHOGLUCOISOMERASE 3	Phosphoglucoisomerase3, Phosphoglucoisomerase 3, Phosphoglucoisomerase-3	PHOSPHOGLUCOISOMERASE 3	Pgi3-0, Pgi3-1		P(ST-H,PAGE-TC). Double band. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060604			GO:0004347 - glucose-6-phosphate isomerase activity		
265	PII	Pi i, Pii, Pi-i, Pii(t)	PYRICULARIA ORYZAE RESISTANCE-I	Pyricularia oryzae resistance-i, Magnaporthe grisea resistance-I Blast resistance I			9	Resistant to rice blast disease. Varieties 'Ishikari-shiroge' and 'Fujisaka 5' have this gene. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060615			GO:0009620 - response to fungus	TO:0000510 - penetrated to total root ratio, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009047 - stem , PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
266	PIIS2	Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5	PYRICULARIA ORYZAE RESISTANCE-IS-2	PPyricularia oryzae resistance-is-2, Magnaporthe grisea resistance-is2, Blast resistance is2				PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Imochi shirazu (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060618			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000512 - Plant survival percentage under submergence	PO:0009025 - vascular leaf 
267	PISE2	Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2	PYRICULARIA ORYZAE RESISTANCE-SE-2	Pyricularia oryzae resistance-se-2, Magnaporthe grisea resistance-se2, Blast resistance se2				Original line is Sensho (Japonica). The independent genes Rb1, Rb2 and Rb3 acted additively to control resistance to blast fungus (Goto 1970). PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060623			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000517 - relative shoot elongation under submergence	PO:0009025 - vascular leaf 
268	PISE3	Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3	PYRICULARIA ORYZAE RESISTANCE-SE-3	Pyricularia oryzae resistance-se-3, Magnaporthe grisea resistance-se3, Blast resistance se3				Original line is Sensho (Japonica). The independent genes Rb1, Rb2 and Rb3 acted additively to control resistance to blast fungus (Goto 1970). PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060624			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000518 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
269	PISH	Pi sh, Pish, Pi-sh, Pish(t)	PYRICULARIA ORYZAE RESISTANCE SH	Pyricularia oryzae resistance-sh, Magnaporthe grisea resistance-sh, Blast resistance sh		pish	1	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling. Original lines are Shin 2, Norin 22 and Nihonbare (Japonica). Map position (148.7-154.8 cM). LOC_Os01g57340. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os01g0782100	LOC_Os01g57340.1	GR:0060625			GO:0009620 - response to fungus	TO:0000519 - rooting depth, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
270	PI15	Pi15(t), Pi15, RMg34.	PYRICULARIA ORYZAE RESISTANCE 15	Pyricularia oryzae resistance 15, Magnaporthe grisea resistance-15, Blast resistance 15			9	Resistant  to several races of Pyricularia grisea. [RGN13:18]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is GA25 (Japonica). Map position (31.3-34.9 cM).	 Tolerance and resistance - Disease resistance			GR:0060644			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000490 - protein composition related trait, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
271	PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii, RMg22, RMg21	PYRICULARIA ORYZAE RESISTANCE 3	Pyricularia oryzae resistance 3, Magnaporthe grisea resistance-3, Blast resistance 3			9	resistant to several races of Pyricularia grisea. [RGN13:15]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Pi5 locus was previously reported to be linked to the RG788 on chromosome 4. Pi3(t) and Pi5(t) are the same resistance gene. Original line is Pai-Kan-Tao (Japonica). The two NB-LRR genes Pi5-1 and Pi5-2 are required for rice Pi5-mediated resistance to M. oryzae (Lee et al. 2009). EU869185 = Pi5-1, EU869186 = Pi5-2. AB820896 (Oryza sativa Japonica cv. Hitomebore). Nipponbare is known to lack Pii. Scrutiny of Os09g0327600 from Nipponbare showed that this gene encodes a truncated R-protein that is likely to be nonfunctional. The Nipponbare Os09g0327600 gene seems to have lost R-gene function by truncation of the region corresponding to the C-terminus of the protein.	 Tolerance and resistance - Disease resistance	Os09g0327575/Os09g0327600	LOC_Os09g15840.1	GR:0060631 GR:0060632			GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000074 - blast disease, TO:0000500 - leaf blast disease resistance, TO:0000502 - potassium chlorate resistance	PO:0009025 - vascular leaf 
272	PI67	Pi67(t)*, Pi67, Pi67(t)	PYRICULARIA ORYZAE RESISTANCE 67	Pyricularia oryzae resistance from Tsuyuake, Magnaporthe grisea resistance from Tsuyuake, Magnaporthe grisea resistance-67, Blast resistance 67				Pyricularia oryzae resistance from Tsuyuake. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060656			GO:0009620 - response to fungus	TO:0000478 - abscisic acid concentration, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
273	PIB1	Pib1*, pib1*t, Pib1	PYRICULARIA ORYZAE RESISTANCE B 1	Pyricularia oryzae resistance from Lemont, Magnaporthe grisea resistance from Lemont, Magnaporthe grisea resistance-b1				PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060658			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000472 - vascular bundle number, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
274	PIB2	Pib2*, Pilm2, Pib2	PYRICULARIA ORYZAE RESISTANCE B 2	Pyricularia oryzae resistance from Lemont, Magnaporthe grisea resistance from Lemont, Magnaporthe grisea resistance-b2				PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060659			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000473 - grain shattering	PO:0009025 - vascular leaf 
275	PIQ1	Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1	PYRICULARIA ORYZAE RESISTANCE Q 1	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq1, Blast resistance tq1			6	Pyricularia oryzae resistance from Teqing.  Original line is Tequing/Teqing (Indica). Map position (103.0-124.4 cM). PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060660			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000474 - glume opening	PO:0009025 - vascular leaf 
276	PIQ2	Piq2*, Pitq2*, Pitq2	PYRICULARIA ORYZAE RESISTANCE Q 2	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq2, Blast resistance tq2				Pyricularia oryzae resistance from Teqing. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060661			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000475 - adventitious root thickness, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
277	PIQ3	Piq3*, Pitq3*, Pitq3	PYRICULARIA ORYZAE RESISTANCE Q 3	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq3, Blast resistance tq3				Pyricularia oryzae resistance from Teqing. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060662			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000476 - growth hormone content, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
278	PIQ4	Piq4*, Pitq4*, Pitq4	PYRICULARIA ORYZAE RESISTANCE Q 4	Pyricularia oryzae resistance from Teqing, Magnaporthe grisea resistance from Teqing, Magnaporthe grisea resistance-tq4, Blast resistance tq4				Pyricularia oryzae resistance from Teqing. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060663			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
279	PJ	Pj	PURPLE JUNCTURA	Purple junctura				Make junctura (leaf collar) purple. PO:0006012; leaf collar.	 Coloration - Anthocyanin			GR:0060667			GO:0009812 - flavonoid metabolic process	TO:0000364 - leaf collar color	PO:0006012 - leaf collar 
280	PJB	Pjb	PURPLE JUNCTURA BACK	Purple junctura back				Make junctura (leaf collar) back purple. PO:0006012; leaf collar.	 Coloration - Anthocyanin			GR:0060668			GO:0009812 - flavonoid metabolic process	TO:0000364 - leaf collar color	PO:0006012 - leaf collar 
282	PLA1	pla1, OsPLA1, plt1, CYP78A11	PLASTOCHRON 1	plastochron1, plastochron 1, plastochron-1, Cytochrome P450 78A11, Protein PLASTOCHRON1	CYTOCHROME P450 78A11	pla1-1, pla1-2, pla1-3, pla1-4, pla1/cyp78a11, pla1	10	Leaves differentiate 2 times faster in vegetative phase. In reproductive phase, the primordia of primary rachis change into shoots, showing heterochrony mutation in which the program in vegetative phase expressed in reproductive phase continuously. Similar to leafy head (lhd), but no allelism information due to the loss of original lhd stock. EC=1.14.-.-  Q7Y1V5. PO:0020148; shoot apical meristem ; PO:0020122; inflorescence axis. GRO:0007140; B-reproductive stage ; GRO:0007189; panicle stage PA1 ; GRO:0007139; A-vegetative stage.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Reproductive organ - panicle,  Reproductive organ - Panicle, Mode of branching,  Heterochrony,  Coloration - Anthocyanin,  Vegetative organ - Leaf	Os10g0403000	LOC_Os10g26340.1	GR:0061116			GO:0007275 - multicellular organismal development, GO:0004497 - monooxygenase activity, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0010228 - vegetative to reproductive phase transition, GO:0048366 - leaf development, GO:0055114 - oxidation reduction, GO:0051781 - positive regulation of cell division, GO:0020037 - heme binding, GO:0010432 - bract development, GO:0010229 - inflorescence development, GO:0009055 - electron carrier activity	TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000659 - phyllochron, TO:0000730 - mitotic cell cycle trait, TO:0000621 - inflorescence development trait, TO:0002638 - shoot meristem development, TO:0000369 - vegetative growth time, TO:0000050 - inflorescence branching, TO:0000346 - tiller number, TO:0000391 - seed size	PO:0020122 - inflorescence axis , PO:0001083 - inflorescence development stage , PO:0020148 - shoot apical meristem 
284	PLG	Plg	PURPLE LIGULE	Purple ligule				Make ligule purple. PO:0020105; ligule.	 Coloration - Anthocyanin			GR:0060675			GO:0009812 - flavonoid metabolic process	TO:0000197 - ligule color	PO:0020105 - ligule 
285	PLM	Plm(Pla), Pla, Plm	PURPLE LEAF MARGIN	Purple leaf margin, Purple leaf apex				Make leaf margin purple. PO:0020039; leaf lamina.	 Coloration - Anthocyanin			GR:0060676			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color	PO:0020039 - leaf lamina 
286	PM	Pm(Sp), Sp, Pm	PURPLE SEPTUM	Purple septum				Make septum purple. PO:0020141; stem node ; PO:0005005; shoot internode.	 Coloration - Anthocyanin			GR:0060677			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color, TO:0000426 - internode color	PO:0020141 - stem node , PO:0005005 - shoot internode 
287	PMR	Pmr(Plm), Plm, Pmr	PURPLE MIDRIB	Purple midrib				Make midrib purple. PO:0020039; leaf lamina.	 Coloration - Anthocyanin			GR:0061117			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color	PO:0020039 - leaf lamina 
288	PMS	pms(t)*	PHOTOPERIOD SENSITIVE MALE STERILITY	photoperiod-sensitive male sterility					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development, GO:0009648 - photoperiodism	TO:0000009 - genic male sterility-photoperiod sensitive	
289	PNR	Pnr	PURPLE NODAL RING	Purple nodal ring				Make nodal ring purple. PO:0020141; stem node.	 Coloration - Anthocyanin			GR:0060684			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color	PO:0020141 - stem node 
290	PROL	Prol*, Pro6	PROLAMIN	Prolamin, Prolamin-6	PROLAMIN			PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060697			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
291	PRS	prs	PROPANIL SUSCEPTIBILITY	propanil susceptibility				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060700			GO:0009628 - response to abiotic stimulus	TO:0000058 - herbicide sensitivity	PO:0009011 - plant structure , PO:0000003 - whole plant 
292	PS3	Ps3(Ps2), Ps2, Ps3	PURPLE STIGMA 3	Purple stigma3, Purple stigma 3, Purple stigma-3				Make stigma purple. PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060705			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
293	PSH	Psh	PURPLE LEAF SHEATH	Purple leaf sheath				Make leaf sheath purple. PO:0020104; leaf sheath.	 Coloration - Anthocyanin			GR:0060707			GO:0009812 - flavonoid metabolic process	TO:0000367 - basal leaf sheath color	PO:0020104 - leaf sheath 
294	PU	Pu	PURPLE PULVINUS	Purple pulvinus				Make pulvinus purple. PO:0020141; stem node.	 Coloration - Anthocyanin			GR:0060709			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color	PO:0020141 - stem node 
295	PX	Px	PURPLE LEAF AXIL	Purple leaf axil				Make leaf axil purple. PO:0020039; leaf lamina.	 Coloration - Anthocyanin			GR:0060710			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color, TO:0000299 - leaf lamina color	PO:0020039 - leaf lamina 
296	R1*	R1*	FERTILITY RESTORATION1	Fertility restoration1				nuclear gene for 'WA' cytoplasm	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration						GO:0009566 - fertilization	TO:0000498 - female fertility restoration trait, TO:0000308 - male fertility restoration trait	
297	R2*	R2*	FERTILITY RESTORATION2	Fertility restoration1				additive action	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration						GO:0009566 - fertilization	TO:0000308 - male fertility restoration trait, TO:0000498 - female fertility restoration trait	
298	R5MT	R5MT*	RESISTANCE TO 5METHYLTRYPTOPHAN	Resistance to 5methyltryptophan, Resistance to 5 methyltryptophan				Dominant gene. Seedling and callus is resistant to 5-methyltryprophan. Resistant plants contain higher level of free amino acids in their seed, seedling and callus than those of susceptible plants. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060711			GO:0009628 - response to abiotic stimulus	TO:0000482 - chemical stress sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
299	RAL1	ral1*, ral1	RADICLELESS 1	radicleless1, radicleless 1, radicleless-1		ral1-1. ral-1-2		This mutant fails to develop radicle. PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Root			GR:0060722			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000257 - root branching, TO:0000064 - embryo related trait	PO:0009089 - endosperm , PO:0009009 - plant embryo 
300	RCN3	rcn3	REDUCED CULM NUMBER 3	reduced culm number-3				Few tillers under low temperature conditions.  Panicle number is extremely low, and plant height is reduced to 50% of that of the original strain, AC-15.  [256] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060728			GO:0009266 - response to temperature stimulus, GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000152 - panicle number, TO:0000432 - temperature response trait	PO:0009047 - stem 
301	RCN4	rcn4	REDUCED CULM NUMBER 4	reduced culm number-4				Few tillers under low temperature conditions. Panicle number is highly reduced, and plant height is about 70% of that of the original strain, AC-34. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060729			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000152 - panicle number, TO:0000576 - stem length, TO:0000432 - temperature response trait, TO:0000346 - tiller number, TO:0000207 - plant height	PO:0009047 - stem 
302	RCN6	rcn6	REDUCED CULM NUMBER 6	reduced culm number-6				Few tillers. [RGN13:14] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060731			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000346 - tiller number	PO:0009047 - stem 
303	RCP	Rcp	RECEPTOR GENE FOR PEROXIDASE	Receptor gene for peroxidase	RECEPTOR GENE FOR PEROXIDASE	Rcp-2A, Rcp-4A			 Biochemical character			GR:0060732			GO:0004601 - peroxidase activity		
305	RE1	re1	REDUCED EMBRYO 1	reduced embryo-1, REDUCED EMBRYO1		re1, re1-1, re1-2		Significant development of endosperm results in the restriction of space for embryo development, embryo size being reduced to 35-45% of that of the wild type. Size of every organ in embryo is reduced. This gene controls the development of endosperm. [708] PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. GO:2000014: regulation of endosperm development. RE1 and RE2 act upstream of GE in embryo-facing endosperm and are epistatic to GE in endosperm, but non-epistatic in embryo. They have opposite roles to GE in embryo/endosperm size balance (Nagasawa et al. 2013).	 Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Embryo			GR:0060734			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis, GO:0009960 - endosperm development	TO:0000575 - endosperm related trait, TO:0000064 - embryo related trait, TO:0000587 - endosperm quality	PO:0009089 - endosperm , PO:0009009 - plant embryo 
306	RE2	re2	REDUCED EMBRYO 2	reduced embryo2, reduced embryo 2, reduced embryo-2		re2, re2-1	10	Significant development of endosperm results in the restriction of space for embryo development, embryo size being reduced to 35-45% of that of the wild type. Size of every organ in embryo is reduced. This gene controls the development of endosperm, being located on the short arm of chromosome 10 flanked by CAPS markers C10 7.7 (2.6cM) and C10 11.5 (2.6cM). PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. RE1 and RE2 act upstream of GE in embryo-facing endosperm and are epistatic to GE in endosperm, but non-epistatic in embryo. They have opposite roles to GE in embryo/endosperm size balance (Nagasawa et al. 2013).	 Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm			GR:0060735			GO:0009960 - endosperm development, GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait, TO:0000587 - endosperm quality, TO:0000575 - endosperm related trait	PO:0009009 - plant embryo , PO:0009089 - endosperm 
308	RE3	re3	REDUCED EMBRYO 3	reduced embryo3, reduced embryo 3, reduced embryo-3		re3		Extensive development os endosperm results in the restriction of space for embryo development, embryo size being reduced to 35-45% of that of the wild type. Size of every organ in embryo is reduced. This gene controls the development of endosperm. [708] PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Embryo			GR:0060736			GO:0009960 - endosperm development, GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait, TO:0000587 - endosperm quality, TO:0000575 - endosperm related trait	PO:0009009 - plant embryo , PO:0009089 - endosperm 
310	REG1-2A	Reg1-2A, Reg1	REGULATOR GENE FOR PEROXIDASE1	Regulator gene for peroxidase1, Regulator gene for peroxidase 1, Regulator gene for peroxidase-1, Regulator-1	REGULATOR GENE FOR PEROXIDASE1				 Biochemical character			GR:0060737			GO:0004601 - peroxidase activity, GO:0030234 - enzyme regulator activity		
311	REG2-4A	Reg2-4A, Reg2	REGULATOR GENE FOR PEROXIDASE2	Regulator gene for peroxidase2, Regulator gene for peroxidase 2, Regulator gene for peroxidase-2, Regulator-2	REGULATOR GENE FOR PEROXIDASE2				 Biochemical character			GR:0060738			GO:0030234 - enzyme regulator activity, GO:0004601 - peroxidase activity		
312	RF AK(RFJ)	Rf ak(Rfj), Rf7, Rfak, Rfj	POLLEN FERTILITY RESTORATION-AK	Pollen fertility restoration-ak, Pollen fertility restoration-7				PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060739			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
315	RHZ	Rhz(t), Rhz1	RHIZOME GENE	Rhizomatous from O. longistaminata, Rhizomatous from O. longistaminata-1				Rhizomes appears at the lower nodes. Introduced from O. longistaminata. PO:0009005; root.	 Vegetative organ - Root			GR:0060755			GO:0007275 - multicellular organismal development	TO:0000257 - root branching	PO:0009005 - root 
316	RLB-4C	RLB-4C, Reg3	REGULATOR GENE FOR PEROXIDASE	Regulator gene for peroxidase, Regulator gene for peroxydase (leaf blade), Regulator-3					 Biochemical character			GR:0061125			GO:0004601 - peroxidase activity, GO:0030234 - enzyme regulator activity		
317	RLS-4C	RLS-4C, Reg4	REGULATOR GENE FOR PEROXIDASE	Regulator gene for peroxidase, Regulator gene for peroxydase (leaf blade), Regulator-4					 Biochemical character			GR:0061126			GO:0004601 - peroxidase activity, GO:0030234 - enzyme regulator activity		
318	RP	rp(t)(rpt), rtp, rp	RETARDED PANICLE DEVELOPMENT	retarded panicle development				Inhibition of panicle development under low temperature condition.  Even under higher temperature, panicle length is reduced and spikelets is deformed showing low seed setting. PO:0009049; inflorescence ; PO:0009046; flower.	 Reproductive organ - Inflorescence			GR:0060782			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower , PO:0009049 - inflorescence 
319	RT	rt	ROOT GROWTH INHIBITION	root growth inhibition				Induced from a dwarf mutant line, Fukei 71 treated with 0.3% solution of ethylene imine for 2 hrs. at 30C.  Inhibit root elongation and root number.  Plant height is not affected, remaining almost the same as that of the normal in early stage. (Futsuhara & Kitano, 1985) PO:0009005; root.	 Vegetative organ - Root			GR:0060784			GO:0007275 - multicellular organismal development	TO:0000084 - root number, TO:0000227 - root length	PO:0009005 - root 
320	SA	S A(t)*, S-A(t)	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-A	Hybrid sterility due to anther indehiscence-A	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-A			complementary. Hybrid sterility due to anther indehiscence. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060785			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower 
321	SA2	S A2(A2), S A2, A2	HYBRID STERILITY A 2	Hybrid sterility-A-2, Sporophytic F2 sterility				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060787			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
322	S A2(S2)	s a2(s2), x2, s2, s a2	HYBRID STERILITY-A-2	hybrid sterility-a-2, hybrid sterility-a2				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060799			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
323	SB	S B(t)*, S-B(t)	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-B	Hybrid sterility due to anther indehiscence-B				Hybrid sterility due to anther indehiscence. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060788			GO:0007275 - multicellular organismal development	TO:0000499 - flower anatomy and morphology trait, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
324	SB1	S B1(B1), B1, S B1	HYBRID STERILITY B 1	Hybrid sterility-B, Sporophytic F2 sterility B				sporophytic F2 sterility. duplicate. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060789			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000046 - f2-generation sterility, TO:0000437 - male sterility	PO:0009046 - flower 
325	SC	S C(t)*	HYBRID STERILITY DUE TO ANTHER INDEHISCENCE-C	Hybrid sterility due to anther indehiscence-C				Hybrid sterility due to anther indehiscence. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060791			GO:0007275 - multicellular organismal development	TO:0000499 - flower anatomy and morphology trait, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
326	SD2	s d2	HYBRID STERILITY D 2	hybrid sterility-d-2, hybrid sterility-d2				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060803			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
327	S	s Kr*, skr	SUPPRESSOR FOR GRAIN SIZE	suppressor for grain size (Kr1, Kr2)				PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060807				TO:0000391 - seed size	PO:0009010 - seed 
328	S12	S12(t)	HYBRID STERILITY 12	Hybrid sterility12, Hybrid sterility 12, Hybrid sterility-12				Pollen killer.  Pollen killing due to allelic interaction. [RGN12:20] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060819			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
329	S14	S14(t)	HYBRID STERILITY 14	Hybrid sterility14, Hybrid sterility 14, Hybrid sterility-14				Pollen killer.  Pollen killing due to allelic interaction. [RGN12:21] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060821			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
330	S2		HYBRID STERILITY 2	Hybrid sterility2, Hybrid sterility 2, Hybrid sterility-2		S2-a .		Sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060809			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
331	S4		HYBRID STERILITY 4	Hybrid sterility4, Hybrid sterility 4, Hybrid sterility-4		S4-a .		Sporogametophytic interaction. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060811			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
332	SA	Sa*, S-a, Hst16	F1 POLLEN STERILITY A	F1 pollen sterility-a, Hybrid sterility-16		San, Sa-n, S-aj, S-ai, Saj	1	One-locus sporogametophytic interaction. Sa-n (pollen fertility neutral gene). A locus for indica-japonica hybrid male sterility, Sa, comprises two adjacent genes, SaM and SaF, encoding a small ubiquitin-like modifier E3 ligase-like protein and an F-box protein, respectively (Long et al. 2008). S51(t) can be allelic to Sa (Li et al., 2020).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060792			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000421 - pollen fertility, TO:0000042 - f1-hybrid incompatibility, TO:0000436 - spikelet sterility, TO:0000036 - hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower 
333	SB	Sb, TRP1	STEM BORER RESISTANCE	Stem borer resistance				Stem borer resistance  (Dutt et al. 1980, Kaneda 1988) PO:0009047; stem ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060837			GO:0009625 - response to insect	TO:0000454 - stem borer resistance	PO:0009047 - stem , PO:0000003 - whole plant 
334	SB	Sb*, S-b, Hst17, S24, F5-Du	F1 POLLEN STERILITY B	F1 pollen sterility-b, Hybrid sterility-17		Sbn, Sbi, Sbj, Sb-n	5	one-locus sporogametophytic interaction. Sb-n (pollen fertility neutral gene).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060793			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000421 - pollen fertility, TO:0000436 - spikelet sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000036 - hybrid incompatibility	PO:0009046 - flower 
335	SC1	Sc1, RRs1	SCLEROTIUM ORYZAE RESISTANCE 1	Sclerotium oryzae resistance1, Sclerotium oryzae resistance 1, Rhizoctonia solani (sheath blight) resistance-1, Sclerotia disease resistance-1				duplicate. PO:0020104; leaf sheath.	 Tolerance and resistance - Disease resistance			GR:0061127			GO:0009620 - response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000323 - stem rot disease resistance	PO:0020104 - leaf sheath 
336	SC2	Sc2, RRs2	SCLEROTIUM ORYZAE RESISTANCE 2	Sclerotium oryzae resistance2, Sclerotium oryzae resistance 2, Rhizoctonia solani (sheath blight) resistance-2, Sclerotia disease resistance-2				PO:0020104; leaf sheath.	 Tolerance and resistance - Disease resistance			GR:0061128			GO:0009620 - response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000323 - stem rot disease resistance	PO:0020104 - leaf sheath 
338	SD	Sd*, S-d, Hst19	F1 POLLEN STERILITY D	F1 pollen sterility-d, Hybrid sterility-19				one-locus sporogametophytic interaction. The locus of F1 pollen sterility gene S-d was found in cross Taichung 65/Karang Serang (Zhang et al. 1996).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060795			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000436 - spikelet sterility, TO:0000437 - male sterility	PO:0009046 - flower 
340	SD2	sd2	SEMIDWARF 2	semidwarf2 (CI11033), semidwarf 2, semidwarf-2				PO:0009047; stem.	 Vegetative organ - Culm			GR:0060843			GO:0009826 - unidimensional cell growth	TO:0000207 - plant height, TO:0000576 - stem length	PO:0009047 - stem 
341	SD3	sd3	SEMIDWARF 3	semidwarf3 (CI9858), semidwarf 3, semidwarf-3				PO:0009047; stem.	 Vegetative organ - Culm			GR:0060844			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
342	SD4	sd4	SEMIDWARF 4	semidwarf4 (CI11034), semidwarf 4, semidwarf-4				Semidwarf. Pleiotropic effect of small seed size and slightly earlier maturity. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060845			GO:0009826 - unidimensional cell growth	TO:0000469 - days to maturity, TO:0000207 - plant height, TO:0000576 - stem length, TO:0000391 - seed size	PO:0009047 - stem 
343	SD5	sd5	SEMIDWARF 5	semidwarf5 (Short Labelle), semidwarf 5, semidwarf-5				Semidwarf gene. Obtained from the X2 generation of radiation treatment on the long grain variety 'Labelle' in 1978. Plant height is 20cm shorter than the original variety. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060846			GO:0009826 - unidimensional cell growth	TO:0000146 - seed length, TO:0000207 - plant height, TO:0000576 - stem length	PO:0009047 - stem 
344	SD6	sd6(t), sd6	SEMIDWARF 6	semidwarf6 (R34), semidwarf-6(R34), semidwarf-6, semidwarf 6				This semidwarf gene shows an open-stemmed plant type and a larger number of spikelets per panicle. PO:0009047; stem.	 Vegetative organ - Culm			GR:0060847			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000139 - grains per panicle, TO:0000068 - lodging incidence, TO:0000207 - plant height	PO:0009047 - stem 
345	SD8	sd8(t), sd8	SEMIDWARF 8	semidwarf8 (AB60e'3), semidwarf-8(AB-60e'-3), semidwarf-8, semidwarf 8				15 to 19 cm shorter than T65.  [RGN12:23] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060849			GO:0009826 - unidimensional cell growth	TO:0000207 - plant height, TO:0000576 - stem length	PO:0009047 - stem 
346	SDRA	Sdra (Sd), Sdra, Sdua, Sdr6	SEED DORMANCY A	Seed dormancy-a, Seed dormancy-6				Controls seed dormancy. Active in the A phase of three water intake patterns in the germination process. Complementary with Sdrb. [501] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060856			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
347	SDRB	Sdrb, Sdub, Sdr7	SEED DORMANCY B	Seed dormancy-b, Seed dormancy-7				Controls seed dormancy. Active in the A phase of three water intake patterns in the germination process. Complementary with Sdra. [501] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060857			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
348	SE	Se*, S-e, Hst20	F1 POLLEN STERILITY E	F1 pollen sterility-e, Hybrid sterility-20			12	one-locus sporogametophytic interaction. The locus of F1 pollen sterility gene S-e was found in cross Taichung 65/N29 (Zhang et al. 1996). It suggested that there was a gene for F1 pollen sterility on the region of RM19-RM453 on chromosome 12.The locus for F1 pollen sterility is named S-e (Zhu et al., 2008). Having a similar map position and same genetic activity, S25, S36, S39, qS12, and Se might therefore be multiple alleles on the same locus responsible for hybrid sterility in rice (Li et al. 2020).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060796			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000436 - spikelet sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
349	SE4	Se4(t)	PHOTOSENSITIVITY 4	Photosensitivity4, Photosensitivity 4, Photoperiod-sensitivity-4				"Weak response to photoperiod in \"Nanjing 11\". [RGN10:8] PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage."	 Reproductive organ - Heading date			GR:0060863			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009013 - portion of meristem tissue 
350	SE6	se6(t)	PHOTOSENSITIVITY 6	photosensitivity6 (W1623), photosensitivity6, photosensitivity 6, photosensitivity-6				Suppressed by Ef1.  Recessive gene. [RGN12:23] PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060865			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009011 - plant structure , PO:0009049 - inflorescence , PO:0000003 - whole plant 
351	SE7	se7(t)	PHOTOSENSITIVITY 7	photosensitivity7 (W593), photosensitivity 7, photoperiod-sensitivity-7(W593), photoperiod-sensitivity-7, photosensitivity7				Suppressed by Ef1.  Recessive gene. [RGN12:23] PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060866			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
352	SF	Sf*, S-f, Hst21	F1 POLLEN STERILITY F	F1 pollen sterility-f, Hybrid sterility-21				one-locus sporogametophytic interaction. The locus of F1 pollen sterility gene S-f was found in cross Yongshanxiaobaigu/Guangluai 4 (Zhang et al. 1996).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060797			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
353	SG	Sg	PERMEABILITY OF TESTA TO WATER	Permeability of testa to water				Controls seed dormancy. Active in B phase of three water intake patterns in the germination process. [501] PO:0009010; seed.	 Seed - Physiological traits - Dormancy			GR:0060872			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
354	SHD	Shd(t)*, Shd	SHOOT DIFFERENTIATION FROM SEED-CALLUS	Shoot differentiation from seed-callus, Shoot differentiation from seed callus				PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Shoot apical meristem(SAM)			GR:0060878			GO:0009790 - embryonic development	TO:0000243 - invitro regeneration ability	PO:0000003 - whole plant , PO:0009011 - plant structure 
361	SPO1	spo1*, shp1, spt1	SHOOT POSITION 1	shoot position1, shoot position 1, shoot position-1				PO:0009009; embryo ; PO:0020144; apical meristem ; PO:0020031; radicle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060890			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0020031 - radicle , PO:0009009 - plant embryo , PO:0020144 - apical meristem 
362	SHP2	shp2	SHEATHED PANICLE 2	sheathed panicle2, sheathed panicle 2, sheathed panicle-2				Though this is almost the same as Shp-1, the panicle base is discernible.  Recessive. [256] PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060886			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000145 - internode length, TO:0000165 - panicle exsertion, TO:0000089 - panicle type	PO:0020142 - stem internode , PO:0009049 - inflorescence 
363	SK1	Sk1, Fgr	SCENTED KERNEL 1	Scented kernel1, Scented kernel 1, Scented kernel-1				PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009010; seed.	 Seed - Physiological traits - Taste			GR:0060893			GO:0009698 - phenylpropanoid metabolic process	TO:0000087 - aroma	PO:0009010 - seed , PO:0009011 - plant structure , PO:0000003 - whole plant 
364	SM	Sm	STEM MAGGOT RESISTANCE	Stem maggot resistance				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060898			GO:0009625 - response to insect	TO:0000332 - rice whorl maggot resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
365	SPL11	spl11, spl11*, OsPUB11, PUB11, OsPUB11/SPL11, PUB11/SPL11	SPOTTED LEAF 11	spotted leaf11, spotted leaf-11, Protein spotted leaf 11, Cell death-related protein SPL11, plant U-box-containing protein 11, U-box protein 11, U-box-type E3 ubiquitin ligase 11	CELL DEATH-RELATED PROTEIN SPL11	spl11	12	Rust colored spots which start appearing at maximum tillering stage and continue until maturity. The spots are distributed throughout the leaf blade with maximum concentration along the midrib. EC=6.3.2.- A2ZLU6(indica). Q0IMG9(japonica). PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. AY652589, AY652590. a U-Box/Armadillo Repeat Protein.  LOC_Os12g38210. class II PUB protein (U-box + ARM/HEAT). EST: CB680406, BF430451, CF305067, AT003699, AT003719, AA749599, AU173870, AU197209, BI812454. KC611075-KC611087 (O. sativa and wild rice species, partial cds). U-box domain and ARM repeat domain protein.	 Tolerance and resistance - Lesion mimic,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance	Os12g0570000	LOC_Os12g38210.1	GR:0060912			GO:0042742 - defense response to bacterium, GO:0004842 - ubiquitin-protein ligase activity, GO:0009614 - disease resistance, GO:0043066 - negative regulation of apoptosis, GO:0019941 - modification-dependent protein catabolic process, GO:0016567 - protein ubiquitination, GO:0005488 - binding, GO:0000151 - ubiquitin ligase complex, GO:0045824 - negative regulation of innate immune response, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering, GO:0031347 - regulation of defense response, GO:0043067 - regulation of programmed cell death, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response, TO:0000074 - blast disease, TO:0000069 - variegated leaf, TO:0000112 - disease resistance	PO:0009025 - vascular leaf 
366	SPR2	Spr2	SPREADING PANICLE 2	Spreading panicle2, Spreading panicle-2				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060914			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
367	SPRA	Spra*	SPREADING PANICLE A	Spreading panicle-a				Complementary with Spr2. Primary panicle branches extend obliquely outward so that the panicles appear spreding and lax.[292] Spreading panicle. PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060918			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
368	SPRB	Sprb*	SPREADING PANICLE B	Spreading panicle-b				Primary panicle branches extend obiquely outward so that the panicles appear spreading and lax. Complementary with Spr1.[292] Spreading panicle. PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060919			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
370	SRT1	srt1*, srt1	SHORT ROOT 1	short root1, short root 1, short root-1				Root length of 5 days after emergence is 1.8cm in comparison with 9.5cm of its wild type. PO:0009005; root.	 Vegetative organ - Root			GR:0060920			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
371	SRT2	srt2*, srt2	SHORT ROOT 2	short root2, short root 2, short root-2				Root length of 5 days after emergence is 3.4cm in comparison with 8.5 cm of wild type. PO:0009005; root.	 Vegetative organ - Root			GR:0060921			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
372	SRT3	srt3*, srt3	SHORT ROOT 3	short root3, short root 3, short root-3				Growth of seminal root is suppressed and stops growing by the 2nd day after germination. PO:0009005; root.	 Vegetative organ - Root			GR:0060922			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
373	SRT4	srt4*, srt4	SHORT ROOT 4	short root4, short root 4, short root-4				"Growth of seminal root is suppressed immediately after germination. This mutant was obtained from the M2 of variety \"Oochikara\". PO:0009005; root."	 Vegetative organ - Root			GR:0060923			GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
374	SUG1	Su g1	SUPPRESSOR FOR LONG STERILE LEMMAS G 1	Suppressor for long sterile lemmas (g1), SUPPRESSOR FOR LONG STERILE LEMMAS G1				This gene suppresses the long length of empty glume of the lemma side, when it co-exists with g1 for long empty glumes. [299] PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Sterility			GR:0060941			GO:0007275 - multicellular organismal development	TO:0000240 - sterile lemma length	PO:0009037 - lemma 
375	SUSE1	SuSe1(t)*, Su Se1(t)*	SUPPRESSOR FOR PHOTOSENSITIVITY SE 1	Suppressor for photosensitivity (Se1), Suppressor for photoperiod-sensitivity (Se1)				PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060942			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009049 - inflorescence , PO:0009011 - plant structure , PO:0000003 - whole plant 
376	SUCIF	SuCinf*, SUCINF, Su-Cif, Su Cinf	SUPPRESSOR FOR CROSS-INCOMPATIBILITY CINF	Suppressor for cross-incompatibility (Cif), Suppressor for cross-incompatibility (Cinf)				PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060940			GO:0009566 - fertilization, GO:0009856 - pollination	TO:0000035 - incompatibility trait	PO:0009082 - spikelet floret 
377	SUD1	Sud1(t)*, Sud1(t), Sud1	SUCCINATE DEHYDROGENASE 1	Succinate dehydrogenase1, Succinate dehydrogenase 1, Succinate dehydrogenase-1	SUCCINATE DEHYDROGENASE 1	Sud1-1(t), Sud1-2(t), Sud1-3(t)			 Biochemical character			GR:0060944			GO:0000104 - succinate dehydrogenase activity		
378	SUD2	Sud2(t)*, Sud2(t), Sud2	SUCCINATE DEHYDROGENASE 2	Succinate dehydrogenase2, Succinate dehydrogenase 2, Succinate dehydrogenase-2	SUCCINATE DEHYDROGENASE 2				 Biochemical character			GR:0060945			GO:0000104 - succinate dehydrogenase activity		
379	SUD3	Sud3(t)*, Sud3(t), Sud3	SUCCINATE DEHYDROGENASE 3	Succinate dehydrogenase3, Succinate dehydrogenase 3, Succinate dehydrogenase-3	SUCCINATE DEHYDROGENASE 3	Sud3-0(t), Sud3-1(t)			 Biochemical character			GR:0060946			GO:0000104 - succinate dehydrogenase activity		
380	TH	Th	HARD THRESHABILITY	Hard threshability				PO:0009049; inflorescence. GRO:0007045; 09-mature grain stag.	 Seed - Physiological traits - Shattering			GR:0061143			GO:0009838 - abscission	TO:0000406 - panicle threshability	PO:0009049 - inflorescence 
381	TMS	tms(t)*, ms83	THERMOSENSITIVE MALE STERILITY	thermosensitive male sterility, male sterile-83				26 Zhaizao S. PO:0009073; stigma ; PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060958			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000044 - stigma exsertion, TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther , PO:0009073 - stigma 
382	TMS2	tms2, ms81, tms-2	THERMOSENSITIVE MALE STERILITY 2	thermosensitive male sterility2, thermosensitive male sterility-2, thermosensitive male sterility 2, male sterile-81				Male sterile under higher temperatures. PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060956			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther 
383	TPIL(T)*	Tpil(t)*, Tpi1(t), Tpi1	TRIOSEPHOSPHATE ISOMERASE1	Triosephosphate isomerase1, Triosephosphate isomerase 1, Triosephosphate isomerase-1	TRIOSEPHOSPHATE ISOMERASE1	Tpi1-1(t), Tpi1-2(t)			 Biochemical character			GR:0060964			GO:0004807 - triose-phosphate isomerase activity		
384	TSB	tsb, ts2	TWISTED STEM-B	twisted stem-b, twisted stem-2				Complementary with tsa. Twisted growing habit of stem. [81]	 Vegetative organ - Culm			GR:0060968			GO:0007275 - multicellular organismal development		
385	TSV2	tsv2	RICE TUNGRO SPHERICAL VIRUS RESISTANCE 2	rice tungro spherical virus resistance2, rice tungro spherical virus resistance 2, rice tungro spherical virus resistance-2				Resistance to rice tungro spherical virus.	 Tolerance and resistance - Disease resistance			GR:0060971			GO:0009615 - response to virus	TO:0000413 - rice tungro virus resistance	
386	TUVA	Tuva, Tuv3	TUNGRO RESISTANCE A	Tungro resistance-a, Tungro resistance-3				complementary	 Tolerance and resistance - Disease resistance			GR:0060973			GO:0009814 - defense response, incompatible interaction, GO:0051607 - defense response to virus	TO:0000413 - rice tungro virus resistance	
387	TUVB	Tuvb, Tuv4	TUNGRO RESISTANCE B	Tungro resistance-b, Tungro resistance-4					 Tolerance and resistance - Disease resistance			GR:0060974			GO:0051607 - defense response to virus, GO:0009814 - defense response, incompatible interaction	TO:0000413 - rice tungro virus resistance	
388	V(KL1111)	v(KL1111)	VIRESCENT-KL 1111	virescent-(KL1111)				virescent-(KL1111)	 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	
389	V(KL406)	v(KL406)	VIRESCENT-KL 406	virescent-(KL406)				virescent-(KL406)	 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	
390	VEP1	vep1*, vep1	VARIABLE EMBRYO PHENOTYPES 1	variable embryo phenotypes1, variable embryo phenotypes 1, variable embryo phenotypes-1				PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060992			GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
391	VEP2	vep2*, vep2	VARIABLE EMBRYO PHENOTYPES 2	variable embryo phenotypes2, variable embryo phenotypes 2, variable embryo phenotypes-2				PO:0009009; embryo. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060993			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
392	VEP3	vep3*, vep3	VARIABLE EMBRYO PHENOTYPES 3	variable embryo phenotypes3, variable embryo phenotypes 3, variable embryo phenotypes-3				PO:0009009; embryo ; PO:0020031; radicle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060994			GO:0009653 - anatomical structure morphogenesis, GO:0009790 - embryonic development	TO:0000064 - embryo related trait	PO:0020031 - radicle , PO:0009009 - plant embryo 
393	WEF1	wEfl	WEAKENING EARLY HEADING OF EF 1	weakening early heading of Ef1, weakening effect for Fl21.2			10	When wEf1 was combined with Ef1, plants headed a few days later than Ef1 alone. Closely linked with Ef1 on choromosome 10. PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060999			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009049 - inflorescence 
394	WBPH2	Wph2	WHITEBACKED PLANTHOPPER RESISTANCE 2	Whitebacked planthopper resistance2, Whitebacked planthopper resistance 2, Whitebacked planthopper resistance-2					 Tolerance and resistance - Insect resistance			GR:0061005			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
395	WBPH3	Wph3	WHITEBACKED PLANTHOPPER RESISTANCE 3	Whitebacked planthopper resistance3, Whitebacked planthopper resistance 3, Whitebacked planthopper resistance-3					 Tolerance and resistance - Insect resistance			GR:0061006			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
396	WBPH4	wph4	WHITEBACKED PLANTHOPPER RESISTANCE 4	whitebacked planthopper resistance4, whitebacked planthopper resistance 4, whitebacked planthopper resistance-4					 Tolerance and resistance - Insect resistance			GR:0061007			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
397	WBPH5	Wph5	WHITEBACKED PLANTHOPPER RESISTANCE 5	Whitebacked planthopper resistance5, Whitebacked planthopper resistance 5, Whitebacked planthopper resistance-5					 Tolerance and resistance - Insect resistance			GR:0061008			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
398	WPH6(T)*	Wph6(t)*, Wph6(t), Wph6	WHITEBACKED PLANTHOPPER RESISTANCE6	Whitebacked planthopper resistance6, Whitebacked planthopper resistance 6, Whitebacked planthopper resistance-6					 Tolerance and resistance - Insect resistance			GR:0061009			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
399	XA NM(T)*	xa nm(t)*	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE NM	Xanthomonas oryzae pv. oryzae resistance-nm					 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
400	XA11	Xa11(Xa pt), Xa11, Xapt	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 11	Xanthomonas oryzae pv. oryzae resistance 11, Xanthomonas campestris pv. oryzae resistance-11, Xanthomonas oryzae pv. oryzae resistance-11			3	Xa11 was located between RM347 and KUX11 at genetic distances of 2.0 and 1.0 cM, respectively. (Goto et al. 2009)	 Tolerance and resistance - Disease resistance			GR:0061019			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
401	XA16	Xa16	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 16	Xanthomonas oryzae pv. oryzae resistance 16, Xanthomonas campestris pv. oryzae resistance-16, Xanthomonas oryzae pv. oryzae resistance-16				Dominant resistant gene to Japanese isolates J8581 and H8584, but susceptible to all other Japanese isolates.[RGN6:3]	 Tolerance and resistance - Disease resistance			GR:0061024			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
402	XA17	Xa17	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 17	Xanthomonas oryzae pv. oryzae resistance 17, Xanthomonas campestris pv. oryzae resistance-17, Xanthomonas oryzae pv. oryzae resistance-17				Dominant resistant gene to Japanese isolates J8513. [RGN6:3]	 Tolerance and resistance - Disease resistance			GR:0061025			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
403	XA18	Xa18	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 18	Xanthomonas oryzae pv. oryzae resistance 18, Xanthomonas campestris pv. oryzae resistance-18, Xanthomonas oryzae pv. oryzae resistance-18				Dominant resistant gene to Burmese isolates BM8417 and BM8429. [RGN6:4]	 Tolerance and resistance - Disease resistance			GR:0061026			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
404	XA19	xa19	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 19	Xanthomonas oryzae pv. oryzae resistance 19, Xanthomonas campestris pv. oryzae resistance-19, Xanthomonas oryzae pv. oryzae resistance-19				Recessive resistant gene to Philippine isolates 1, 2, 3, 4, 5 and 6.  Mutant induced by N-methyl-N-nitrosourea.  [RGN7:17] .	 Tolerance and resistance - Disease resistance			GR:0061027			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
405	XA20	xa20	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 20	Xanthomonas oryzae pv. oryzae resistance 20, Xanthomonas campestris pv. oryzae resistance-20, Xanthomonas oryzae pv. oryzae resistance-20				Recessive resistant gene to Philippine isolates 1, 2, 3, 4, 5 and 6.  Mutant induced by N-methyl-N-nitrosourea.  [RGN7:17] .	 Tolerance and resistance - Disease resistance			GR:0061028			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
406	XA8	xa8	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 8	Xanthomonas oryzae pv. oryzae resistance 8, Xanthomonas campestris pv. oryzae resistance-8, Xanthomonas oryzae pv. oryzae resistance-8			7	Resistant to bacterial blight disease.	 Tolerance and resistance - Disease resistance			GR:0061017			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
407	XDH1	Xdh1(t)*, Xdh1(t), Xdh1	XANTHINE DEHYDROGENASE 1	xanthine dehydrogenase, Xanthine dehydrogenase-1	XANTHINE DEHYDROGENASE 1	Xdh1-1(t), Xdh1-2(t)		P(PAGE-TC).	 Biochemical character			GR:0061038			GO:0004854 - xanthine dehydrogenase activity		
408	YDV	Ydv	YELLOW DWARF DISEASE RESISTANCE	Yellow dwarf disease resistance					 Tolerance and resistance - Disease resistance			GR:0061040			GO:0006952 - defense response	TO:0000292 - yellow dwarf disease resistance	
409	YL	yl*	CHLOROPHYLL MUTANT	chlorophyll mutant (unstable gamete)				From the 1st leaf and above, they become  yellowish white. Most seedlings die at the second leaf stage. For the survived ones, though the new leaf is yellowish white, later chlorophyll is recovered  and becomes green.	 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	
410	YP	yp*, gh4	YELLOW PANICLE	yellow panicle, gold hull and internode-4				Yellow-green hulls and leaves. They are visible until maturity at which time they become indistiguishable from normal straw color hulls. This gene has a pleiotropic effect for early maturity. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0061045			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism, GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000264 - lemma and palea color, TO:0000077 - shoot anatomy and morphology trait, TO:0000137 - days to heading	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
411	YSL	ysl	YELLOW LEAF SPOT	yellow leaf spot				This mutant shows yellow spots in the leaves. [499] PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Leaf			GR:0061046			GO:0015996 - chlorophyll catabolic process	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0000003 - whole plant , PO:0009011 - plant structure 
412	Z(KL1207)	z(KL1207)	ZEBRA	zebra(KL1207)					 Coloration - Chlorophyll						GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf	
413	ZLH1	Zlh1	ZIGZAG LEAFHOPPER RESISTANCE 1	Zigzag leafhopper resistance1, Zigzag leafhopper resistance 1, Zigzag leafhopper resistance-1					 Tolerance and resistance - Insect resistance			GR:0061061			GO:0002213 - defense response to insect	TO:0000082 - zigzag leafhopper resistance	
414	ZLH2	Zlh2	ZIGZAG LEAFHOPPER RESISTANCE 2	Zigzag leafhopper resistance2, Zigzag leafhopper resistance 2, Zigzag leafhopper resistance-2					 Tolerance and resistance - Insect resistance			GR:0061062			GO:0002213 - defense response to insect	TO:0000082 - zigzag leafhopper resistance	
415	ZLH3	Zlh3	ZIGZAG LEAFHOPPER RESISTANCE 3	Zigzag leafhopper resistance3, Zigzag leafhopper resistance 3, Zigzag leafhopper resistance-3					 Tolerance and resistance - Insect resistance			GR:0061063			GO:0002213 - defense response to insect	TO:0000082 - zigzag leafhopper resistance	
416	AL8	al8, alK8	ALBINO 8	albino8, albino 8, albino-8			1	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060027			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
417	ALD2	Ald2*(ald2), Ald2, ald2	ALDOLASE 2	Aldolase2, Aldolase 2, Aldolase-2	ALDOLASE 2		1		 Biochemical character			GR:0060032			GO:0016832 - aldehyde-lyase activity		
418	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c	ALPHA-AMYLASE 1B	Alpha-amylase1B, Alpha-amylase isozyme C, Alpha-amylase isozyme 1B, Alpha-amylase-1B, Amylase-2, ALPHA-AMYLASE 1-3, alpha-amylase c, high PI alpha amylase	ALPHA-AMYLASE 1B		1	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. A2WPU3(indica). Q0JMV4(japonica). M59350. X52240. D10417 (partial cds).	 Biochemical character	Os01g0357400	LOC_Os01g25510.1	GR:0060044			GO:0005975 - carbohydrate metabolic process, GO:0005509 - calcium ion binding, GO:0004556 - alpha-amylase activity		
419	ARF2	Arf2*, Arf2, ARF-2	ADP RIBOSYLATION FACTOR 2	ADP ribosylation factor(ARF)2, ADP ribosylation factor (ARF)-2, ADP ribosylation factor-2, ADP ribosylation factor 2	ADP RIBOSYLATION FACTOR 2		1		 Biochemical character			GR:0060061			GO:0006886 - intracellular protein transport, GO:0006471 - protein amino acid ADP-ribosylation		
420	CHL5	chl5	CHLORINA 5	chlorina5, chlorina 5, chlorina-5			1	PO:0009025; leaf ; PO:0006343; axillary shoot. GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0060122			GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color, TO:0000346 - tiller number	PO:0009025 - vascular leaf , PO:0006343 - axillary shoot system 
421	D18	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1	DWARF 18	hosetsu-waisei(d18-h), Akibare waisei(d18-AD), Waito-D(d18-dy), Kotaketamanishiki(d18-k), GA 3beta-hydroxylase2, GA 3beta-hydroxylase 2, GA 3-oxidase 2, Gibberellin(GA)-3 beta-hydroxylase-2	GIBBERELLIN 3BETA-HYDROXYLASE 2	d18-h, d18-AD, d18-dy, d18-k	1	One of the alleles of d18. Plant is about 15cm high with stout dark green leaves but haing nearly normal grains. Significant response to gibberellin. Mutant at OsGA3ox2 locus. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.This gene controls some steps of gibberelline synthesis. The defect of this process causes dwarfism of rice. This gene corresponds to the location of D18 gene, at the distal end of short arm of Chromosome 1. Loss of function of this gene induces d18 dwarf. GA 3beta-hydroxylase, Putative 3b-hydroxylase. PO:0000003; whole plant ; PO:0009046; flower.  EU179398-EU179402 (wild rice species). GA3ox1 in Zhao et al. 2016, Nie et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os01g0177400	LOC_Os01g08220.1	GR:0020076,GR0061382			GO:0009685 - gibberellin metabolic process, GO:0016707 - gibberellin 3-beta-dioxygenase activity, GO:0009742 - brassinosteroid mediated signaling, GO:0009409 - response to cold, GO:0009628 - response to abiotic stimulus, GO:0009686 - gibberellin biosynthetic process, GO:0042446 - hormone biosynthetic process, GO:0009651 - response to salt stress, GO:0007275 - multicellular organismal development, GO:0009741 - response to brassinosteroid stimulus, GO:0009826 - unidimensional cell growth, GO:0010212 - response to ionizing radiation	TO:0000299 - leaf lamina color, TO:0006001 - salt tolerance, TO:0000161 - radiation response trait, TO:0000492 - leaf shape, TO:0000303 - cold tolerance, TO:0002675 - gibberellic acid content, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000576 - stem length, TO:0000040 - panicle length, TO:0000401 - plant growth hormone sensitivity, TO:0000499 - flower anatomy and morphology trait, TO:0000207 - plant height	PO:0009046 - flower , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0000003 - whole plant 
423	D2	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11, OsD2a, OsD2b	DWARF EBISU	ebisu dwarf, dwarf-2, cytochrome P450 CYP90D2, Ebisu dwarf/Dwarf2, Dwarf2, SMALL GRAIN 11, cytochrome P450 D2	C-23 HYDROXYLASE	d2, d2-1, d2-2, d2-3, smg11	1	AP003244. Q94IW5. The shape of stem and leaf resembles to d1 but the shape of spikelet is almost normal. TO:0000847: panicle anatomy and morphology trait.  GO:0030307: positive regulation of cell growth. TO:0000789: bud morphology trait. qLTG1 (QTL for low-temperature germinability) candidate.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Character as QTL - Germination	Os01g0197100	LOC_Os01g10040.2, LOC_Os01g10040.1	GR:0060185			GO:0016021 - integral to membrane, GO:0009741 - response to brassinosteroid stimulus, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0009742 - brassinosteroid mediated signaling, GO:0009651 - response to salt stress, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010224 - response to UV-B, GO:0020037 - heme binding, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0004497 - monooxygenase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0007275 - multicellular organismal development, GO:0051607 - defense response to virus, GO:0010029 - regulation of seed germination, GO:0050832 - defense response to fungus, GO:0016132 - brassinosteroid biosynthetic process, GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid	TO:0000040 - panicle length, TO:0006001 - salt tolerance, TO:0000397 - grain size, TO:0000299 - leaf lamina color, TO:0000135 - leaf length, TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000382 - 1000-seed weight, TO:0000601 - UV-B light sensitivity, TO:0000346 - tiller number, TO:0000567 - tiller angle, TO:0000206 - leaf angle, TO:0000329 - tillering ability, TO:0006032 - panicle size, TO:0000255 - sheath blight disease resistance, TO:0000132 - basal internode diameter, TO:0000391 - seed size, TO:0000430 - germination rate, TO:0000262 - panicle shape, TO:0000020 - black streak dwarf virus resistance, TO:0000396 - grain yield, TO:0002677 - brassinosteroid sensitivity, TO:0002759 - grain number, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity	PO:0007057 - 0 seed germination stage 
424	D26	d26, dwf22	DWARF 7237	7237 dwarf, dwarf-26			1	Plant height is about two thirds of normal type. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060205			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
425	D54	d54(d K5), dK5, d54, dwf35	DWARF KYUSHU 5	dwarf Kyushu5, dwarf Kyushu 5, dwarf Kyushu-5, dwarf-54			1	"Dwarf induced by chemical mutagen on \"Kinmaze\" variety. PO:0009047; stem ; PO:0009010; seed."	 Vegetative organ - Culm			GR:0060219			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000576 - stem length, TO:0000391 - seed size	PO:0009047 - stem , PO:0009010 - seed 
426	D55	d55(d K6), dK6, dwf36, d55	DWARF KYUSHU 6	dwarf Kyushu6, dwarf Kyushu-6, dwarf Kyushu 6, dwarf-55			1	"Dwarf induced by chemical mutagen on \"Kinmaze\" variety. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf ; PO:0009010; seed."	 Vegetative organ - Culm			GR:0060220			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000576 - stem length, TO:0000391 - seed size, TO:0000089 - panicle type, TO:0000370 - leaf width	PO:0009010 - seed , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
427	DM-1*	Dm-1*	SHORT CULM SHOWING DM-TYPE	Short culm showing dm-type			1	incomplete dominance. [391]	 Vegetative organ - Culm							TO:0000207 - plant height	
428	EST10	Est10	ESTERASE 10	Esterase10, Esterase 10, Esterase-10	ESTERASE 10	Est10-0, Est10-1, Est10-2, Est10-3, Est10-4, Est10-5	1	Monomers. S(PAGE-TC). The band migrates slower than that of Est5. Active in seed, and faint in leaves showing some modification. Est10-4 is specifically found in wild rice, O. rufipogon.	 Biochemical character			GR:0060314			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
429	EST5	Est5	ESTERASE 5	Esterase5, Esterase 5, Esterase-5	ESTERASE 5	Est5-0, Est5-1, Est5-2.	1	Monomer. S & P(PAGE-TC,Page-TBE, single band), P & C(ST-H, alpha-NAc-specific double black band).	 Biochemical character			GR:0060309			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
430	GA9	ga9	GAMETOPHYTE GENE 9	gametophyte gene9, gametophyte gene 9, gametophyte gene-9			1		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060351			GO:0019953 - sexual reproduction		
431	GF2	gf2	GOLD FURROWS OF HULL 2	gold furrows of hull2, gold furrows of hull 2, gold furrows of hull-2			1	From panicle exsertion up to maturity, the lemma and palea of this mutant have golden furrows that are very intense, thus giving the hulls golden color. [399] PO:0009088; seed coat. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060364			GO:0009812 - flavonoid metabolic process	TO:0000484 - seed shape, TO:0000264 - lemma and palea color	PO:0009088 - seed coat 
432	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1	GLUTELIN 1	Rice glutelin1, Rice glutelin 1, Rice glutelin-1	GLUTELIN 1	Glu1-1, Glu1-2	1	This gene controls rice seed protein glutelin alpha-5a and alpha-5b subunits. [313] PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060394			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
433	GLU1	Glu1t*(Glu1), Glu1t*, Glu1t, Glu1, Glu12	GLUTELIN 1	Glutelin subunit1, Glutelin subunit 1, Glutelin subunit-1, Rice glutelin-12	GLUTELIN 1		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060401			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
434	GLU2	Glu2t*(Glu2), Glu2t*, Glu2t, Glu2, Glu13	GLUTELIN 2	Glutelin subunit2, Glutelin subunit 2, Glutelin subunit-2, Rice glutelin-13	GLUTELIN 2		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060402			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
435	GLU3	glu3(t)*, glu10, LGLU3	GLUTELIN 3	lack of glutelin subunit3, lack of glutelin subunit 3, lack of glutelin subunit-3, rice glutelin-10	GLUTELIN 3		1	The acidic subunits of glutelin appear as several sopts in two-dimentional electrophoresis. glu3 is deficient in spot 3a. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060392			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
436	GLU3	Glu3t*(Glu3), Glu3t*, Glu3t, Glu3, Glu14	GLUTELIN 3	Glutelin subunit3, Glutelin subunit 3, Glutelin subunit-3, Rice glutelin-14	GLUTELIN 3		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060403			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
437	GOT1	Got1, Aat1, OsAAT, GOT-A	GLUTAMATE OXALOACETATE TRANSAMINASE 1	Aspartate aminotransferase1, Aspartate aminotransferase 1, Aspartate aminotransferase-1	GLUTAMATE OXALOACETATE TRANSAMINASE 1	Got1-1, Got1-2, Got1-3	1	Dimer.	 Biochemical character			GR:0060427			GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
438	ICD1	Icd1	ISOCITRATE DEHYDROGENASE 1	Isocitrate dehydrogenase1, Isocitrate dehydrogenase 1, Isocitrate dehydrogenase-1	ISOCITRATE DEHYDROGENASE 1	Icd1-1, Icd1-2, Icd1-3 (Idh-A)	1	Dimer. P(ST-H).	 Biochemical character			GR:0060469			GO:0004449 - isocitrate dehydrogenase (NAD+) activity, GO:0004448 - isocitrate dehydrogenase activity		
439	ILB	Ilb*, Ilb	INHIBITOR OF LEAF BLADE COLOR	Inhibitor of leaf blade color, Inhibitor for purple leaf blade			1	Inhibitor for purple leaf blade. This inhibitory activity is unique in strictly leaf blade-specific. PO:0020104; leaf sheath.	 Coloration - Anthocyanin			GR:0060471			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color, TO:0000367 - basal leaf sheath color	PO:0020104 - leaf sheath 
440	IPSB	IPsb(IPs2), IPsb, IPs2, Ips4	INHIBITOR FOR PURPLE STIGMA B	Inhibitor for purple stigma-b (Psb), Inhibitor for purple stigma-b, Inhibitor for purple stigma-4			1	Inhibitor for purple stigma. Complementary with IPsa. PO:0009073; stigma.	 Coloration - Anthocyanin			GR:0060483			GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0009073 - stigma 
441	LGT	lgt	LONG TWISTED GRAIN	long twisted grain			1	PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060499			GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000484 - seed shape	PO:0009010 - seed 
442	MP1	mp1	MULTIPLE PISTIL 1	multiple pistil1, multiple pistil 1, multiple pistil-1			1	florets of this mutant have two or more functional pistils, and two kernels are enclosed within one lemma and palea. [228] PO:0009046; flower.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060531			GO:0009887 - organ morphogenesis	TO:0000499 - flower anatomy and morphology trait	PO:0009046 - flower 
443	MS M77(T)*	ms m77(t)*, ms69, msm77(t)*, MS M77, msm77	MALE STERILE(MILYANG 77MS)	male sterile(Milyang 77ms), male sterile (Milyang 77ms), male sterile-69			1	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060560			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
444	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1, OsPR6b, PR6b	ORYZACYSTATIN 1	Oryzacystatin1, Oryzacystatin-1, Oryzacystatin I, Oryzacystatin-I, Cysteine proteinase inhibitor 1, cystatin-I, oryzacystatin, Pathogenesis related gene 6b	ORYZACYSTATIN 1		1	P09229. J03469. M29259. U54702. AU055940, AU055941. D29717.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Biochemical character	Os01g0803200	LOC_Os01g58890.4, LOC_Os01g58890.3, LOC_Os01g58890.2, LOC_Os01g58890.1	GR:0060578			GO:0009617 - response to bacterium, GO:0030414 - peptidase inhibitor activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005576 - extracellular region, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance, TO:0000432 - temperature response trait, TO:0000054 - animal damage resistance	
445	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, Pit1, OsPit1	PYRICULARIA ORYZAE RESISTANCE T	Pyricularia oryzae resistance-t, Magnaporthe grisea resistance-t, Blast resistance 5, NLR-type resistance gene Pit1, NLR protein Pit1	NLR PROTEIN PIT1	PitNpb, PitK59, PitNip, PitTakanari, PitKoshihikari, PitNipponbare, PitSenshou	1	AB379815, AB379816, AB379817. KF741792-KF741826. Original line is Tjahaja and K59 (Indica). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. 	 Tolerance and resistance - Disease resistance	Os01g0149500	LOC_Os01g05620.1	GR:0060626		12.2	GO:0006952 - defense response, GO:0009620 - response to fungus, GO:0005886 - plasma membrane, GO:0051707 - response to other organism, GO:0043531 - ADP binding, GO:0043068 - positive regulation of programmed cell death, GO:0005829 - cytosol	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000520 - stomatal closure rate	PO:0020141 - stem node , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009047 - stem 
446	PRPA	Prpa(Pp), Pp, Prpa, Prp1	PURPLE PERICARP-A	Purple pericarp-a, Purple pericarp, Purple pericarp-1			1	Make pericarp purple in complementary action with Prp-b.[84] PO:0009088; seed coat. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060698			GO:0009812 - flavonoid metabolic process	TO:0000190 - seed coat color	PO:0009088 - seed coat 
447	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3	RESTORATION OF FERTILITY 3	Pollen fertility restoration-3			1	additive.  Fertility restoration (WA cytoplasm).  duplicate. Fertility restoration for WA cytoplasm, Pollen fertility restoration for WA cytoplasm. PO:0009066; anther. Four genes viz. mitochondrial-processing peptidase subunit alpha (Os01g0191500), pollen-specific protein (Os01g0192600), and two pentatricopeptide (PPR) genes, (Os01g0197450; Os01g0205200) were considered as candidate genes in the Rf3 locus (Suresh et al. 2012).	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060742			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
449	S13	CSB, OsCHR745, CHR745, OlCHR	HYBRID STERILITY 13	Hybrid sterility13, Hybrid sterility 13, Hybrid sterility-13, chromatin remodeling factor 745	CHROMATIN REMODELING FACTOR 745	S13l, S13s	1	Pollen killer.  Pollen killing due to allelic interaction. [RGN12:20] an ERCC6 protein targeted by osa-miR444 (Qin et al. 2017). OlCHR (O. longistaminata chromatin remodeling factor). selfish allele S13l from O. longistaminata and allele S13s from O. sativa. GO:0140658: ATP-dependent chromatin remodeler activity. 	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Tolerance and resistance - Disease resistance	Os01g0636700	LOC_Os01g44990.1	GR:0060820			GO:0005524 - ATP binding, GO:0007275 - multicellular organismal development, GO:0006289 - nucleotide-excision repair, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0015616 - DNA translocase activity, GO:0003676 - nucleic acid binding, GO:0050832 - defense response to fungus, GO:0006283 - transcription-coupled nucleotide-excision repair	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower , PO:0025121 - pollen sperm cell , PO:0009066 - anther 
450	S16		HYBRID STERILITY 16	Hybrid sterility16, Hybrid sterility 16, Hybrid sterility-16		S16-j, S16-n, S16-kn	1	Semi-sterility expressed as an allelic interaction such as S15-i/S15-du.  Segregation distortion in B1F1 due to the abortion of female gametes having S15-i. [RGN12:21] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060823			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
451	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1, OsJRL01, JRL01, OsJRL1, JRL1	SALT PROTEIN	salt tolerance, Salt tolerance-1, Salt stress-induced protein, Salt protein, Protein lectin-like, Protein mannose-binding lectin, 15 kda organ-specific salt-induced protein, Orysata, jacalin-related mannose-binding lectin, Mannose-Binding Lectin 1, Jacalin-related lectin 1	SALT PROTEIN	osmbl1-3, osmbl1-14	1	Tolerance to salt stress and drought. A2WPN7(indica). Q0JMY8(japonica). PO:0009011; plant structure ; PO:0000003; whole plant. S45168. Z25811. AF285163. AU063562, AU172350, AU066156, AU161751. BF889486. a jacalin-related lectin. CB632549.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os01g0348900	LOC_Os01g24710.4, LOC_Os01g24710.1, LOC_Os01g24710.2, LOC_Os01g24710.3	GR:0060835			GO:0010038 - response to metal ion, GO:0009753 - response to jasmonic acid stimulus, GO:0002238 - response to molecule of fungal origin, GO:0002237 - response to molecule of bacterial origin, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion, GO:0046689 - response to mercury ion, GO:0010200 - response to chitin, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0002213 - defense response to insect, GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000261 - insect damage resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000034 - chromium sensitivity, TO:0000432 - temperature response trait, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000608 - sodium content	PO:0009011 - plant structure , PO:0000003 - whole plant 
452	SH2	sh2	SHATTERING 2	shattering2, shattering 2, shattering-2		sh2	1	Expressed from the early stage of grain development, the gene forms the abscission layer at the base of steril lemma.  Dominant for abscission layer formation, but incompletely dominant or incompletely recessive for shattering. PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060874				TO:0000473 - grain shattering	PO:0009010 - seed 
453	SSI1	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1	SHORT SECOND INTERNODE 1	Short second internode1 (dm-type), Short second internode 1, Short second internode-1(dm-type), Short second internode-1			1	No elongation of the second internode, i.e. dm-type of internode length ratio. Incomplete dominance. [391] PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060924			GO:0009826 - unidimensional cell growth	TO:0000145 - internode length, TO:0000207 - plant height	PO:0005005 - shoot internode 
454	SSI2	ssi2*, ssi2	SHORT SECOND INTERNODE 2	Short second internode2 (dm-type), Short second internode 2, short second internode-2(dm-type), short second internode-2			1	PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060925			GO:0009826 - unidimensional cell growth	TO:0000145 - internode length, TO:0000207 - plant height	PO:0005005 - shoot internode 
455	TOS1	Tos1*, Tos1, Osr14, Tos4	RETROTRANSPOSON 1	Retrotransposon1, Retrotransposon 1, Retrotransposon-1, LTR retrotransposon Osr14			1	AC069324: 8821-17191 (chromosome 10). X66521 (Tos1-1), X66522 (Tos1-2).	 Biochemical character			GR:0060961			GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
456	TPI	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2	TRIOSEPHOSPHATE ISOMERASE	triosephosphate isomerase (cloned gene), triosephosphate isomerase, Triosephosphate isomerase, cytosolic, Triose-phosphate isomerase, triosephosphate isomerase-2, Cytosolic Triosephosphate lsomerase, Triose-phosphate isomerase	TRIOSEPHOSPHATE ISOMERASE		1	EC=5.3.1.1 P48494. L04967. M87064. D17766. D15092. MG756651. OsTPI1.1 (LOC_Os01g05490.1), OsTPI1.2 (LOC_Os01g05490.2).	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0147900	LOC_Os01g05490.2, LOC_Os01g05490.1	GR:0060963			GO:0006098 - pentose-phosphate shunt, GO:0004807 - triose-phosphate isomerase activity, GO:0005737 - cytoplasm, GO:0006094 - gluconeogenesis, GO:0006633 - fatty acid biosynthetic process, GO:0006096 - glycolysis, GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity	
457	TRYP	TRYP*(tin), TRYP*, tin, Tryp	TRYPSIN INHIBITOR	Trypsin-inhibitor	TRYPSIN INHIBITOR		1		 Biochemical character			GR:0060966			GO:0030304 - trypsin inhibitor activity		
458	TSA	tsa, ts1	TWISTED STEM-A	twisted stem-a, twisted stem-1			1	complementary with tsb. Twisted growing habit of stem. [81]	 Vegetative organ - Culm			GR:0060967			GO:0007275 - multicellular organismal development		
459	Z8	z8	ZEBRA 8	zebra8, zebra 8, zebra-8			1	This mutant shows distinct yellow bands on leaf blades at 35-60 days after seeding. The bands disappear at later growth stages. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0061054		72.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
460	FS2	fs2	FINE STRIPE 2	fine stripe2, fine stripe 2, fine stripe-2			1	White and fine speckles in leaves, caused by a chlorophyll deficiency. Unlike fs1 gene, the expression of this mutant is constant, giving stable expressivity and high penetrance. [499] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060337			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
462	PAU	Pau	PURPLE AURICLE	Purple auricle			1	Make auricle purple. PO:0020106; auricle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060595		26.0	GO:0009812 - flavonoid metabolic process	TO:0000077 - shoot anatomy and morphology trait, TO:0000294 - auricle color	PO:0020106 - leaf sheath auricle 
463	PN	Pn	PURPLE NODE	Purple node			1	Connected with the distribution of color in leaf apex, leaf margin and the entire surface of stem node, collar, auricle and ligule. Among them, stem node is colored most strikingly. [298] PO:0020105; ligule ; PO:0020141; stem node ; PO:0020106; auricle ; PO:0006012; leaf collar ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060683		35.0	GO:0009812 - flavonoid metabolic process	TO:0000294 - auricle color, TO:0000059 - node color, TO:0000299 - leaf lamina color, TO:0000197 - ligule color, TO:0000364 - leaf collar color	PO:0009025 - vascular leaf , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0006012 - leaf collar , PO:0020141 - stem node 
464	RL4	rl4(rl2), rl2, rl4, cul11	ROLLED LEAF 4	rolled leaf4, rolled leaf 4, rolled leaf-4, curl leaf-11			1	semi-rolled leaf. [132] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Vegetative organ - Leaf			GR:0060767		45.0	GO:0030154 - cell differentiation	TO:0000492 - leaf shape, TO:0000085 - leaf rolling, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
465	SHP1(EX)	Shp1(Ex), Ex, Shp1	SHEATHED PANICLE1	Sheathed panicle1, Sheathed panicle 1, Sheathed panicle-1			1	Caused by non-elongated first and second internodes.  Panicle is enclosed by the sheaths of the flag leaf and first leaf.  The lengths of the internodes except the first and second, are normal. A panicle base is not recognizable.  Dominant. [256] PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060885		63.0	GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000145 - internode length, TO:0000165 - panicle exsertion, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0020142 - stem internode 
466	SHR1	shr1, sh1, shr	SHRUNKEN ENDOSPERM 1	shrunken endosperm1, shrunken endosperm 1, shrunken eudosperm-1, shrunken		shr1-s, shr1-a, shr	1	Endosperm is wrinkled, opaque and brittle [597]. The endosperm is stained blue-black by I-KI solution [440] PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. The starch mutant shrunken contains reduced activities of cytosolic ADP-glucose pyrophosphorylase (Kawagoe et al. 2005).	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances			GR:0060891		64.0	GO:0009568 - amyloplast starch grain	TO:0000587 - endosperm quality, TO:0002655 - starch grain size, TO:0002658 - starch grain synthesis, TO:0000100 - shrunken endosperm, TO:0000266 - chalky endosperm	PO:0009089 - endosperm 
467	RD	Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1	RED PERICARP AND SEED COAT	Red pericarp and seed coat, dihydroflavonol 4-reductase, dihydroflavonol-4-reductase, dihydroflavonol 4-reductase 1	DIHYDROFLAVONOL-4-REDUCTASE	Rd1, Rd2	1	Responsible for spreading the color of Rc, when Rc co-exists, giving a dark red pericarp and seed coat, or red rice.  Rd itself does not produce any pigment. [298] Y07956. AB003495, AB003496, AB010744, AB010745. AF490387 (indica). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. PO:0025616: lemma apiculus. TO:0001109: grain color trait.	 Tolerance and resistance - Insect resistance,  Seed,  Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm,  Seed - Morphological traits,  Coloration - Others,  Tolerance and resistance - Disease resistance	Os01g0633500	LOC_Os01g44260.1	GR:0060733		65.0	GO:0009416 - response to light stimulus, GO:0050832 - defense response to fungus, GO:0043473 - pigmentation, GO:0009408 - response to heat, GO:0009718 - anthocyanin biosynthetic process, GO:0048316 - seed development, GO:0051555 - flavonol biosynthetic process, GO:0010023 - proanthocyanidin biosynthetic process, GO:0005634 - nucleus, GO:0009812 - flavonoid metabolic process, GO:0005737 - cytoplasm, GO:0009813 - flavonoid biosynthetic process, GO:0002213 - defense response to insect, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0003824 - catalytic activity	TO:0000075 - light sensitivity, TO:0000706 - hull color, TO:0000326 - leaf color, TO:0000653 - seed development trait, TO:0000071 - anthocyanin content, TO:0000140 - apiculus color, TO:0000707 - pericarp color, TO:0000259 - heat tolerance, TO:0000190 - seed coat color, TO:0000185 - stigma color, TO:0000207 - plant height, TO:0000205 - white-backed planthopper resistance, TO:0000486 - seed color, TO:0000074 - blast disease, TO:0000487 - endosperm color	PO:0009073 - stigma , PO:0009088 - seed coat , PO:0009089 - endosperm , PO:0001170 - seed development stage , PO:0006033 - paleal apiculus , PO:0007010 - whole plant fruit ripening stage 
468	A	A(Sp), Sp, Ap	ANTHOCYANIN ACTIVATOR, RED PERICARP AND SEED COAT 	Anthocyanin activator, ANTHOCYANIN ACTIVATOR, Activator for anthocyanin pigmentation	DIHYDROFLAVONOL-4-REDUCTASE	A-S, A-E, A-d, A-m	1	Convert the precursor substance to anthocyanin. Complementary with C. PO:0006033; paleal apiculus. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060001		66.0	GO:0009812 - flavonoid metabolic process	TO:0000140 - apiculus color	PO:0006033 - paleal apiculus 
469	EST	Est I2*, EstI2*, Est15, ESTL2	ESTERASE 1	Esterase14, Esterase-I2, Esterase-15	ESTERASE 1	EstI2-aa, EstI2-bb, EstI2-nn	1	P(PAGE-TBE). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060319		72.0	GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
470	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1, SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1	SEMIDWARF 1	dee-geo-woo-gen dwarf(sd1-d), green revolution gene, semidwarf-1, GA C20oxidase2, semidwarf-1, reimei dwarf(sd1-r), Calrose76(sd1-3), Jikkoku(sd1-2). rice GA 20-oxidase2, GA 20-oxidase 2, Gibberellin 20 oxidase 2, Gibberellin C-20 oxidase 2, GA 20-oxidase 2, Protein semidwarf-1, semi-dwarf1	GIBBERELLIN 20 OXIDASE 2	sd1-a, sd1-2, sd1-c (=sd1-3), sd1-d(=sd1-1), sd1-r (=sd1-4), SD1-in, SD1-ja, SD1-EQ, SD1-GR, SD1C9285	1	"sd1-d is a dwarf gene of Taiwanese cultivar \"Dee-geo-woo-gen\". Dwarfness is due to low amount of active gibbelleric acid caused by mutation of GA20ox-2 gene. Most of the useful semi-dwarfs of practical value in rice breeding have allelic dwarfing genes at this locus irrespective of their source of origin. When introduced to Fujiminori background, culm length reduced by 18.4cm while sd1-r 12.1cm((Murai and Yamamoto, 2001, Murai et al. 2003). sd1-a (Plant height is shorter by 12 cm than original strain T65). sd1-c(Dwarfing gene obtained from Calrose treated by gamma-ray. Effect of dwarfness is equal to or less than sd1-d).AB077025, AF465255, AF465256, AY114310, U50333. AB213460-AB213479. GA20 oxidase, Gibberellin-20 oxidase, Putative gibberelin 20-oxidase. PO:0009047; stem. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AB538268(SD1-in), AB538265(SD1-ja). SD1-in and SD1-ja were published in Murai et al. (2011, online-published in 2010).This gene catalyzes successive oxidations at the C-20 site of GAs (gibberellic acids), and produces substrates for GA 3-oxidase. This gene is located on chromosome 1 at 149.1cM. Loss of function induces sd1. EC=1.14.11.- P0C5H5(indica), Q0JH50(japonica). AB633592-AB633625 (Asano et al. 2011). EU179376-EU179380 (wild rice species). AB633581-AB633625 (O. sativa and other wild rice species). JN541407-JN542382 (O. sativa and other wild rice species).  AB469066-AB469082 (O. sativa and other wild rice species). AB669899 (indica). OsGA20ox-1 in Thenappan et al. 2024."	 Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0883800	LOC_Os01g66100.1	GR:0060842		73.0	GO:0009609 - response to symbiotic bacterium, GO:0048573 - photoperiodism, flowering, GO:0005506 - iron ion binding, GO:0009628 - response to abiotic stimulus, GO:0009685 - gibberellin metabolic process, GO:0009826 - unidimensional cell growth, GO:0016491 - oxidoreductase activity, GO:0045544 - gibberellin 20-oxidase activity, GO:0009686 - gibberellin biosynthetic process, GO:0055114 - oxidation reduction, GO:0080006 - internode patterning, GO:0030912 - response to deep water	TO:0000599 - enzyme activity, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000401 - plant growth hormone sensitivity, TO:0000576 - stem length, TO:0000524 - submergence tolerance, TO:0002675 - gibberellic acid content, TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0009047 - stem , PO:0020142 - stem internode 
471	GA7	ga7	GAMETOPHYTE GENE 7	gametophyte gene7, gametophyte gene 7, gametophyte gene-7			1		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060349		77.0	GO:0019953 - sexual reproduction		
472	CHL6	chl6	CHLORINA 6	chlorina6, chlorina 6, chlorina-6			1	PO:0009025; leaf. GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0060123		84.0	GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000299 - leaf lamina color, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
473	D10	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10	DWARF 'KIKEIBANSHINRIKI OR TOYOHIKARIBUNWAI TILLERING	kikeibanshinriki or toyohikaribunwai tillering dwarf, dwarf-10, carotenoid cleavage dioxygenase 8, DWARF 10, DWARF10, carotenoid cleavage dioxygenase 8b, OsDWARF10	CATOTENOID DIOXYGENASE 8	ccd8, d10, dwarf10-2, d10-1, d10-2	1	"Similar to \"bunketsu-waito\". Low plant height and very many tillering. Grain shape is normal. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007043; 01-germination. GO:1901601: strigolactone biosynthetic process. ortholog of MAX4/RMS1/DAD1. Q8LIY8. one of MAX4 orthologues. GO:1901698: response to nitrogen compound.  GO:1901601: strigolactone biosynthetic process.  GO:0090548: response to nitrate starvation. GO:1902347: response to strigolactone. GO:0036377: arbuscular mycorrhizal association. TO:0006064: rolled leaf. TO:0006044: magnesium content. TO:0006047: calcium content trait. GO:2000023: regulation of lateral root development. TO:0020076: phenolic compound content."	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0746400	LOC_Os01g54270.1	GR:0060192		96.0	GO:0010223 - secondary shoot formation, GO:0009691 - cytokinin biosynthetic process, GO:0007623 - circadian rhythm, GO:0009926 - auxin polar transport, GO:0042594 - response to starvation, GO:0009826 - unidimensional cell growth, GO:0009570 - chloroplast stroma, GO:0016121 - carotene catabolic process, GO:0009965 - leaf morphogenesis, GO:0046872 - metal ion binding, GO:0080090 - regulation of primary metabolic process, GO:0009507 - chloroplast, GO:0048527 - lateral root development, GO:0009735 - response to cytokinin stimulus, GO:0043455 - regulation of secondary metabolic process, GO:0009610 - response to symbiotic fungus, GO:0030154 - cell differentiation, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0046685 - response to arsenic, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0009733 - response to auxin stimulus, GO:0016124 - xanthophyll catabolic process	TO:0000207 - plant height, TO:0000145 - internode length, TO:0002674 - tryptophan content, TO:0000291 - carbohydrate content, TO:0000281 - metabolite content related trait, TO:0000604 - fat and essential oil content, TO:0002660 - cytokinin content, TO:0002688 - leaf lamina joint bending, TO:0002673 - amino acid content, TO:0000329 - tillering ability, TO:0000136 - relative water content, TO:0000605 - hydrogen peroxide content, TO:0001016 - relative chlorophyll content, TO:0000326 - leaf color, TO:0000152 - panicle number, TO:0000167 - cytokinin sensitivity, TO:0000040 - panicle length, TO:0000011 - nitrogen sensitivity, TO:0000576 - stem length, TO:0000346 - tiller number, TO:0000476 - growth hormone content, TO:0000163 - auxin sensitivity, TO:0000586 - seminal root length, TO:0001013 - lateral root number, TO:0000339 - stem thickness	PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0020142 - stem internode , PO:0009006 - shoot system , PO:0009047 - stem , PO:0007014 - booting stage , PO:0006343 - axillary shoot system 
474	AL4	al4, alK4	ALBINO 4	albino4, albino 4, albino-4			1	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060023		106.0	GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
475	RL1	rl1, cul8	ROLLED LEAF 1	rolled leaf1, rolled leaf 1, rolled leaf-1, curl leaf-8			1	Leaf blade is narrow and rolled cylindrically. [301] PO:0009051; spikelet ; PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060764		107.0	GO:0030154 - cell differentiation	TO:0000492 - leaf shape, TO:0000085 - leaf rolling, TO:0000370 - leaf width, TO:0000180 - spikelet fertility	PO:0009051 - spikelet , PO:0009025 - vascular leaf 
476	MS M67(T)*(MS18)	ms m67(t)*(ms18), ms68, msm67(t)*, ms18	MALE STERILE(MILYANG 67MS)	male sterile(Milyang 67ms)			1	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060559		118.0	GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
477	LAX1	lax, lax(lx), lx, OsbHLH123, bHLH123, OsLAX1, BOS1, OsBOS1	LAX PANICLE 1	lax panicle, Transcription factor LAX PANICLE, lax panicle1, basic helix-loop-helix protein 123, LAX PANICLE1, branch one seed 1	TRANSCRIPTION FACTOR LAX PANICLE 1	lax-1, lax-2, lax-3, lax-4, lax-5, lax1, lax1-1, lax1-3, lax1-6, bos1-1, lax1-7, lax1-c1, lax1-c2	1	lax-1: all lateral spikelets are absent, but fertile terminal spikelets are produced. lax-2: formation of panicle branches and spikekelets is severely reduced. Lateral spilelets are occasionally produced in lax-4 and lax-5. LAX locus is located on chromosome 1 in the region of 82 kb stradding marker C191A. Q7XAQ6. Basic helix-loop-helix (bHLH) transcription factor. AB115668, Axillary meristem formation. orthologue of maize BARRENSTALK1 (BA1). GO:2000904: regulation of starch metabolic process. TO:0000970: panicle density. PO:0030123: panicle inflorescence. TO:0000975: grain width. TO:0003000: stem fresh weight. TO:0003001: stem dry weight. TO:0003021: panicle dry weight. TO:0003020: panicle fresh weight. GO:0090506: axillary shoot meristem initiation. TO:1000024: palea morphology trait.	 Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os01g0831000	LOC_Os01g61480.1	GR:0060493		119.0	GO:0006350 - transcription, GO:0048437 - floral organ development, GO:0048444 - floral organ morphogenesis, GO:0003677 - DNA binding, GO:0009733 - response to auxin stimulus, GO:0030528 - transcription regulator activity, GO:0005634 - nucleus, GO:0009735 - response to cytokinin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0010229 - inflorescence development, GO:0007275 - multicellular organismal development, GO:0005985 - sucrose metabolic process, GO:0045449 - regulation of transcription, GO:0009555 - pollen development, GO:0048497 - maintenance of floral organ identity, GO:0009737 - response to abscisic acid stimulus, GO:0005982 - starch metabolic process, GO:0010081 - regulation of inflorescence meristem growth	TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0001014 - leaf dry weight, TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0000089 - panicle type, TO:0000657 - spikelet anatomy and morphology trait, TO:0000557 - secondary branch number, TO:0000050 - inflorescence branching, TO:0000590 - grain weight, TO:0000145 - internode length, TO:0000371 - yield trait, TO:0000501 - spikelet weight, TO:0002600 - flower organ size, TO:0000449 - grain yield per plant, TO:0000436 - spikelet sterility, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000622 - flower development trait, TO:0000240 - sterile lemma length, TO:0000053 - pollen sterility, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0006022 - floral organ development trait, TO:0000172 - jasmonic acid sensitivity, TO:0000456 - spikelet number, TO:0002759 - grain number, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000397 - grain size, TO:0000455 - seed set percent, TO:0000547 - primary branch number, TO:0000625 - spikelet density, TO:0000163 - auxin sensitivity, TO:0000440 - grain number per plant, TO:0000167 - cytokinin sensitivity, TO:0000382 - 1000-seed weight	PO:0007615 - flower development stage , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0001083 - inflorescence development stage , PO:0001048 - palea development stage , PO:0009038 - palea , PO:0009037 - lemma , PO:0009040 - sterile lemma , PO:0020142 - stem internode , PO:0009029 - stamen , PO:0001007 - pollen development stage 
478	SPL6	spl6	SPOTTED LEAF 6	spotted leaf6, spotted leaf 6, spotted leaf-6			1	Relatively large reddish brown spots appear on leaves and they are similar to spl4. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060907		125.0	GO:0006952 - defense response	TO:0000069 - variegated leaf, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
479	GA8	ga8	GAMETOPHYTE GENE 8	gametophyte gene8, gametophyte gene 8, gametophyte gene-8			1		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060350		132.0	GO:0019953 - sexual reproduction		
480	EG1	eg1, GY1, OsEG1, OsGY1	EXTRA GLUME 1	extra glume-1, extra glume 1, extra glume1, gaoyao1	PUTATIVE TRIACYLGLYCEROL LIPASE 1	eg1, eg1-1, eg1-2, eg1-3, eg1-4, eg1-5, eg1-6, gy1	1	An extra glume between palea and lemma. PO:0009039; glume ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. EG1 is expressed strongly in inflorescence primordia and weakly in developing floral primordia.(2009) Q8S1D9. GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity. GO:0052739: phosphatidylserine 1-acylhydrolase activity. A High Temperature-Dependent Mitochondrial Lipase.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0900400	LOC_Os01g67430.1	GR:0060287		132.0	GO:0030154 - cell differentiation, GO:0016042 - lipid catabolic process, GO:0009408 - response to heat, GO:0009507 - chloroplast, GO:0009873 - ethylene mediated signaling pathway, GO:0048437 - floral organ development, GO:0009695 - jasmonic acid biosynthetic process, GO:0009723 - response to ethylene stimulus, GO:0008970 - phospholipase A1 activity	TO:0000544 - mesocotyl length, TO:0001007 - coleoptile length, TO:0002668 - jasmonic acid content, TO:0006022 - floral organ development trait, TO:0000173 - ethylene sensitivity, TO:0000657 - spikelet anatomy and morphology trait, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009039 - glume 
481	V6	v6	VIRESCENT 6	virescent6, virescent 6, virescent-6			1	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060985		149.0	GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
482	AE3	ae3(t)*, ae3	AMYLOSE EXTENDER 3	amylose extender3, amylose extender 3, amylose extender-3			2	High amylose mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060018			GO:0007275 - multicellular organismal development, GO:0000271 - polysaccharide biosynthetic process	TO:0000487 - endosperm color, TO:0000587 - endosperm quality, TO:0000098 - glutinous endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
483	AMP1	Amp1(Lap1,LapF), LapF, Lap1, Amp1	AMINOPEPTIDASE 1	Aminopeptidase1, Aminopeptidase 1, Aminopeptidase-1	AMINOPEPTIDASE 1	Amp1-0, Amp1-1, Amp1-2, Amp1-3, Amp1-4, Amp1-5, Amp1-6	2	Monomer. S(PAGE-TC), P(PAGE-TC, ST-H). 2 bands appear in L & C(ST-H).	 Biochemical character			GR:0060036			GO:0004177 - aminopeptidase activity		
485	ANT	ant, ricANC1, ANC1	ADENOSINE NUCLEOTIDE TRANSLOCATOR	"adenine nucleotide translocator, \"ADP, ATP carrier protein, mitochondrial precursor\", \"ADP, ATP carrier protein, mitochondrial\", ADP/ATP translocase, ATP/ADP translocator"	ADENOSINE NUCLEOTIDE TRANSLOCATOR		2	LOC_Os02g48720. P31691. D12637. D10430 (partial cds). D22519, D23045.	 Biochemical character	Os02g0718900	LOC_Os02g48720.1, LOC_Os02g48720.2	GR:0060055			GO:0005215 - transporter activity, GO:0016020 - membrane, GO:0000295 - adenine nucleotide transmembrane transporter activity, GO:0006810 - transport, GO:0005488 - binding, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0005743 - mitochondrial inner membrane, GO:0015616 - DNA translocase activity		
486	BC5	bc5, bn, bc-5	BRITTLE CULM 5	brittle node, brittle culm-5			2	The tillers break at the node when gently pulled.  The leaf blades break from leaf sheaths at the junctura upon gentle pulling. In contrast with the other brittle culm mutants, other plant parts are not brittle. [401] PO:0009047; stem ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Vegetative organ - Culm			GR:0060072			GO:0005886 - plasma membrane, GO:0031225 - anchored to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009531 - secondary cell wall, GO:0009834 - secondary cell wall biogenesis, GO:0009808 - lignin metabolic process	TO:0000108 - leaf shattering, TO:0000051 - stem strength, TO:0000061 - node shattering	PO:0009047 - stem , PO:0009025 - vascular leaf 
487	LRT2	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti	LATERAL ROOTLESS2	cyclophilin2, cyclophilin 2, cyclophilin-2, cyclophilin 19-2, LATERAL ROOTLESS 2, lateral-rootless 2, REDUCED GROWTH OF LATERAL ROOTS, reduced growth of lateral roots, lateral root-2, Peptidyl-prolyl cis-trans isomerase	CYCLOPHILIN 2	cyp2, cyp2-1, cyp2-2, lrt2, lrt2/oscyp2	2	AAA57046. BAF07631. L29469, L29470. D16134. D29701. EF576508. OsCYP-2 in Trivedi et al. 2013. Peptidylprolyl isomerase (cyclophilin). OsCYP19-1 in Kumari et al. 2014. GO:0072593: reactive oxygen species metabolic process. GO:2000023: regulation of lateral root development. GO:1901002: positive regulation of response to salt stress.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0121300	LOC_Os02g02890.1	GR:0060181,GR:0060514			GO:0042743 - hydrogen peroxide metabolic process, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0048527 - lateral root development, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0015994 - chlorophyll metabolic process, GO:0009651 - response to salt stress, GO:0004600 - cyclophilin, GO:0009734 - auxin mediated signaling pathway, GO:0016018 - cyclosporin A binding, GO:0009408 - response to heat, GO:0006457 - protein folding, GO:0009733 - response to auxin stimulus, GO:0050801 - ion homeostasis, GO:0046686 - response to cadmium ion, GO:0007275 - multicellular organismal development, GO:0009629 - response to gravity, GO:0048046 - apoplast, GO:0009507 - chloroplast	TO:0001013 - lateral root number, TO:0002693 - gravity response trait, TO:0000227 - root length, TO:0000495 - chlorophyll content, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait	PO:0009005 - root , PO:0007520 - root development stage 
488	D1	D1*, Da, Dhl1	DWARF DAIKOKU 	Dominant lethal1 from O. longistaminata, Dominant hybrid lethal-1			2	Dominant lethal gene obtained from O. longistaminata.  complementary. PO:0009009; embryo ; PO:0006457; ovule (sensu Poaceae) ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060182			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis, GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0020003 - plant ovule , PO:0009009 - plant embryo , PO:0009089 - endosperm 
489	EFX	Efx(t)*, Efx, Ef5(t)*	EARLINESS X	Earliness-x			2	complementary with Efy. PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060282			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
491	GLU10	Glu10t*	GLUTELIN 10	Glutelin subunit10	GLUTELIN 10		2		 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
492	GLU4	Glu4t*(Glu4), Glu4, Glu4t, Glu4t*, Glu15	GLUTELIN 4	Glutelin subunit4, Glutelin subunit 4, Glutelin subunit-4, Rice glutelin-15	GLUTELIN 4		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060404			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
493	GLU5	Glu5t*(Glu5), Glu5, Glu5t, Glu5t*	GLUTELIN 5	Glutelin subunit5, Glutelin subunit 5, Glutelin subunit-5, Rice glutelin-16	GLUTELIN 5		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060405			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
494	GLU6	Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17	GLUTELIN 6	Glutelin subunit6, Glutelin subunit 6, Glutelin subunit-6, Rice glutelin-17	GLUTELIN 6		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060406			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
495	GLU7	Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18	GLUTELIN 7	Glutelin subunit7, Glutelin subunit 7, Glutelin subunit-7, Rice glutelin-18	GLUTELIN 7		2	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060407			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
496	GLU8	Glu8t*(GluE)	GLUTELIN 8	Glutelin subunit8	GLUTELIN 8		2		 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
497	GLU9	Glu9t*	GLUTELIN 9	Glutelin subunit9	GLUTELIN 9		2		 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
498	GOT3	Got3, Aat3	ASPARTATE AMINOTRANSFERASE 3	Aspartate aminotransferase3, Aspartate aminotransferase 3, Aspartate aminotransferase-3	ASPARTATE AMINOTRANSFERASE 3	Got3-1, Got3-2	2	Dimer. P(ST-C, PAGE).	 Biochemical character			GR:0060429			GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
499	GPD1	gpd1*, gpd1	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 1	glyceraldehydephosphate dehydrogenase1, glyceraldehydephosphate dehydrogenase 1, glyceraldehyde-3-phosphate dehydrogenase-1	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 1		2		 Biochemical character			GR:0060430			GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, GO:0008943 - glyceraldehyde-3-phosphate dehydrogenase activity		
500	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy	PYRICULARIA ORYZAE RESISTANCE B	Pyricularia oryzae resistance-b, Magnaporthe grisea resistance-b, Blast resistance b		Pib_40286, Pib_16784, Pib_5151, Pib_11147, Pib_29336, Pib_41515, Pib_41341, Pib_32909, Pib_4633, Pib_26038, Pib_24475, Pib_5284, Pib_29436, Pib_13373, Pib_10101, Pib_9829, Pib_14981, Pib_23713, Pib_23761, Pib_23712, Pib_23721, Pib_40432, Pib_16706, Pib_4868, Pib_2476	2	AB013448, AB013449 (Japonica cultivar Tohoku IL-9). AB026839. Original line is Tohoku IL9 (Japonica). A fragment containing the Pib ORF is absent from Nipponbare as well as the susceptible transformants (Wang, et al., 1999). Nipponbare does not harbor Pib (Xie et al. 2022). Pib was  introduced to Geng/Japonica rice cultivars from Xian/Indica rice by introgression (Cui et al. 2022). Os02g0818500 (LOC_Os02g57310) in Xie et al. 2022. Os02g0818450 (LOC_Os02g57305) in Cui et al. 2022. (The amino acid sequence of Os02g0818500 corresponds to N-terminus (around 1-230 AA) of AB013448 and that of Os02g0818500 corresponds to C-terminus (around 970-1251 AA) of AB013448.) EF642422-EF642443 (O. sativa, O. rufipogon, O. nivara). Pib_40286: KR527222, Pib_16784: KR527223, Pib_5151: KR527224, Pib_11147: KR527225, Pib_29336: KR527226, Pib_41515: KR527227, Pib_41341: KR527228, Pib_32909: KR527229, Pib_4633: KR527230, Pib_26038: KR527231, Pib_24475: KR527232, Pib_5284: KR527233, Pib_29436: KR527234, Pib_13373: KR527235, Pib_10101: KR527236, Pib_9829: KR527237, Pib_14981: KR527238, Pib_23713: KR527239, Pib_23761: KR527240, Pib_23712: KR527241, Pib_23721: KR527242, Pib_40432: KR527243, Pib_16706: KR527244, Pib_4868: KR527245, Pib_2476: KR527246. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. 	 Tolerance and resistance - Disease resistance			GR:0060613		154.1	GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000508 - penetrated root length, TO:0000477 - panicle blast disease resistance	PO:0009049 - inflorescence , PO:0020141 - stem node , PO:0009047 - stem , PO:0009025 - vascular leaf 
501	PI14	Pi14(t), Pi14(t)*, Pi14	PYRICULARIA ORYZAE RESISTANCE 14	Pyricularia oryzae resistance 14, Magnaporthe grisea resistance-14, Blast resistance 14			2	One of the two resistant genes found in Maowangu.  Another one is Pi13(t). Resistant  to several races of Pyricularia grisea. [RGN13:17]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060643			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
502	PI16	Pi16(t), Pi16, Pi-16(t)	PYRICULARIA ORYZAE RESISTANCE 16	Pyricularia oryzae resistance 16, Magnaporthe grisea resistance-16, Blast resistance 16			2	One of the two resitant genes found in GA20.  Another one is Pi-k. Resistant  to several races of Pyricularia grisea. [RGN13:18]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is AUS373.	 Tolerance and resistance - Disease resistance			GR:0060645			GO:0009620 - response to fungus	TO:0000491 - fat and essential oil composition related trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
503	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb	STARCH BRANCHING ENZYME 3	starch branching enzyme3, starch branching enzyme 3, Starch branching enzyme III, Starch branching enzyme-3, starch branching enzyme IIb, branching enzyme-3, Q-enzyme IIa, starch Branching enzyme isoform Type B, Branching enzyme isoform Type B, BE isoform type B	STARCH BRANCHING ENZYME 3	sbe3-rs, be2b, sbeIIb	2	GRO:0007045; 09-mature grain stage. D16201, E08183. HQ712141, HQ712140, HQ712139, HQ712138, HQ712137, HQ712136, HQ712135, HQ712134. HQ679079-HQ679246 (O. sativa and other wild rice species). JQ937272 (SBE3-rs; resistant starch mutant). GBSEIIb (SBEIIb) in Ali et al. 2021, Jin et al. 2021. GO:1901698: response to nitrogen compound.	 Seed - Morphological traits - Endosperm,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits	Os02g0528200	LOC_Os02g32660.2, LOC_Os02g32660.1	GR:0060839			GO:0010021 - amylopectin biosynthetic process, GO:0019252 - starch biosynthetic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009408 - response to heat, GO:0003844 - 1,4-alpha-glucan branching enzyme activity, GO:0005976 - polysaccharide metabolic process, GO:0009501 - amyloplast, GO:0005982 - starch metabolic process, GO:0009568 - amyloplast starch grain	TO:0000333 - sugar content, TO:0000196 - amylose content, TO:0000011 - nitrogen sensitivity, TO:0000462 - gelatinization temperature, TO:0000409 - peak viscosity, TO:0000259 - heat tolerance, TO:0000412 - setback viscosity, TO:0000097 - amylopectin content, TO:0000489 - carbohydrate composition related trait, TO:0000374 - breakdown viscosity, TO:0000696 - starch content, TO:0000604 - fat and essential oil content, TO:0002673 - amino acid content, TO:0000291 - carbohydrate content	PO:0007632 - seed maturation stage , PO:0009089 - endosperm 
504	Z11	z11	ZEBRA 11	zebra11, zebra 11, zebra-11			2	This mutant shows irregular yellow bands on leaf blades throughout the growth duration. The phenotype is very similar to that of z10. This mutant has yellowish white panicles. Mature grains have normal straw color. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0061057		42.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000264 - lemma and palea color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
505	Z12	z12	ZEBRA 12	zebra12, zebra 12, zebra-12			2	This mutant shows irregular yellow bands on leaf blades until early tillering stage. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061058		41.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
506	SPL2	spl2(bl3), spl2, bl3	SPOTTED LEAF 2	spotted leaf2, spotted leaf 2, spotted leaf-2			2	Partial discoloration of leaves and stems appears from the seedling stage, but it is not so obvious in this stage and becomes more distinct in the tillering stage. Somewhat poor viabiity. [137] PO:0009047; stem ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Lesion mimic			GR:0060903			GO:0006952 - defense response	TO:0000069 - variegated leaf, TO:0000063 - mimic response	PO:0009025 - vascular leaf , PO:0009047 - stem 
507	GH2	gh2, CAD2, CAD, OsCAD2, OsGH2	GOLD HULL AND INTERNODE 2	gold hull and internode2, gold hull and internode-2, Cinnamyl alcohol dehydrogenase 2, Sinapyl alcohol dehydrogenase, Protein GOLD HULL AND INTERNODE 2, Cinnamyl alcohol dehydrogenase	CINNAMYL ALCOHOL DEHYDROGENASE 2	gh2, gh2-1	2	This mutant exhibits brownish green lemma and palea at panicle exsertion and deep golden yellow at maturity. This mutant also shows golden-colored internode (Yellow pigment is accumulated at cell wall). Q6ZHS4. GRO:0007142; 1-4 leaf stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. GO:1901698: response to nitrogen compound. PO:0030123: panicle inflorescence. TO:0000930: seed shattering. 	 Biochemical character,  Coloration - Others,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Shattering,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os02g0187800	LOC_Os02g09490.1	GR:0060366		20.0	GO:0009834 - secondary cell wall biogenesis, GO:0009808 - lignin metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0009642 - response to light intensity, GO:0009411 - response to UV, GO:0042742 - defense response to bacterium, GO:0008270 - zinc ion binding, GO:0009055 - electron carrier activity, GO:0055114 - oxidation reduction, GO:0009809 - lignin biosynthetic process, GO:0020037 - heme binding, GO:0022900 - electron transport chain	"TO:0000175 - bacterial blight disease resistance, TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0002729 - fruit senescing quality trait, TO:0000160 - UV light sensitivity, TO:0000426 - internode color, TO:0000460 - light intensity sensitivity, TO:0000473 - grain shattering, TO:0000190_TO:0000426 - \"seed coat color\" or \"internode color\", TO:0000733 - lignin biosynthesis trait, TO:0000264 - lemma and palea color, TO:0000732 - lignin monomer content"	PO:0020142 - stem internode , PO:0000039 - shoot axis vascular system , PO:0000036 - leaf vascular system , PO:0009047 - stem , PO:0009010 - seed , PO:0003011 - root vascular system , PO:0009005 - root , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
508	D30	d30(d W), dW, dwf26, d30	DWARF WAISEISHIRASASA	waiseishirasasa dwarf, dwarf-30			2	Dwarf. Slightly thick culm. Twisted flag leaf at the base of leaf blade with small and short round grains. PO:0009047; stem ; PO:0009025; leaf ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060209		62.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000473 - grain shattering, TO:0000391 - seed size, TO:0000207 - plant height, TO:0000576 - stem length, TO:0000484 - seed shape, TO:0000339 - stem thickness, TO:0000492 - leaf shape	PO:0009025 - vascular leaf , PO:0009010 - seed , PO:0009047 - stem 
509	RF2	Rf2 (Rfx), Rfx, Rf2	RESTORATION OF FERTILITY 2	Pollen fertility restoration2, Pollen fertility restoration 2, Pollen fertility restoration-2			2	PO:0009066; anther. fertility restorer gene for Lead Rice-type cytoplasmic male sterility. AB583698, AB583699, AB583700.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os02g0274000	LOC_Os02g17380.1	GR:0060741		65.0	GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
510	D32	d32(d K4,d12), d12, dwf28, dK4, d32	DWARF KYUSHU 4	dwarf Kyushu4, dwarf Kyushu 4, dwarf Kyushu-4, dwarf-32			2	Dwarf. Weakly spreading tillers with nearly normal grains. PO:0009047; stem ; PO:0009010; seed ; PO:0006343; axillary shoot. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060211		81.0	GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000484 - seed shape, TO:0000427 - culm angle, TO:0000576 - stem length	PO:0009047 - stem , PO:0006343 - axillary shoot system , PO:0009010 - seed 
511	GH3	gh3	GOLD HULL AND INTERNODE 3	gold hull and internode3, gold hull and internode 3, gold hull and internode-3			2	Make glume and internode gold at maturity. [132] PO:0020142; stem internode ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060367		127.0		"TO:0000426 - internode color, TO:0000190_TO:0000426 - \"seed coat color\" or \"internode color\", TO:0000264 - lemma and palea color"	PO:0009010 - seed , PO:0020142 - stem internode 
512	D5	d5, dwf5	DWARF BUNKETSUWAITO TILLERING	bunketsuwaito tillering dwarf, dwarf-5			2	Dwarf. Profuse tillering with slender leaves.[10003] PO:0009047; stem ; PO:0006343; axillary shoot ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060188		137.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000370 - leaf width	PO:0009047 - stem , PO:0006343 - axillary shoot system , PO:0009025 - vascular leaf 
513	CHL10	chl10	CHLORINA 10	chlorina10, chlorina 10, chlorina-10			2	This recessive mutant shows yellowish leaves throughout the growing period.  This was obtained by treating fertilized egg cell with N-methyl-N-nitrosourea (MNU). PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060127		142.0	GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
514	BL1	bl1	BROWN LEAF SPOT 1	brown leaf spot1, brown leaf spot 1, brown leaf spot-1			2	Brown spots appear on leaves shortly after panicle emergence resembling fungus lesions. Then spread even into panicles.[298] PO:0009047; stem ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060082		163.0	GO:0015996 - chlorophyll catabolic process	TO:0000221 - glume color, TO:0000069 - variegated leaf, TO:0000063 - mimic response, TO:0000326 - leaf color, TO:0000056 - stem color	PO:0009047 - stem , PO:0009088 - seed coat , PO:0009025 - vascular leaf 
515	BC3	bc3, bc-3, OsDRP2B, DRP2B	BRITTLE CULM 3	brittle culm3, brittle culm 3, brittle culm-3, dynamin-related protein 2B	DYNAMIN-RELATED PROTEIN 2B		2	A brittle or soft culm. Rather short height and imperfect emergence of panicles. The brittleness of culm and panicle axis of this mutant is not so distinct as that of bc1 and bc2. [132] PO:0009047; stem ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage. GO:0072583: clathrin-dependent endocytosis.	 Vegetative organ - Culm,  Vegetative organ - Root	Os02g0738900	LOC_Os02g50550.1	GR:0060070		172.0	GO:0005525 - GTP binding, GO:0009834 - secondary cell wall biogenesis, GO:0010311 - lateral root formation, GO:0005802 - trans-Golgi network, GO:0045334 - clathrin-coated endocytic vesicle, GO:0048527 - lateral root development, GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0005886 - plasma membrane, GO:0003924 - GTPase activity, GO:0009531 - secondary cell wall, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0006897 - endocytosis, GO:0009808 - lignin metabolic process, GO:0031225 - anchored to membrane	TO:0000061 - node shattering, TO:0000051 - stem strength, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0000306 - root thickness, TO:0000207 - plant height	PO:0009005 - root , PO:0000016 - lateral root primordium , PO:0025082 - reproductive shoot system , PO:0007520 - root development stage , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
516	TRI	tri	TRIANGULAR HULL	triangular hull			2	The spikelet appears triangular because its shape under the lemma. [296] PO:0009038; palea ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Grain shape			GR:0060965		185.0	GO:0007275 - multicellular organismal development	TO:0000484 - seed shape, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009038 - palea 
517	D29	d29(d K1), dwf25, dK1, d29	DWARF SHORT UPPERMOST INTERNODE	short uppermost internode dwarf, dwarf-29			2	Noticeable shortening of uppermost internodes results in the imperfect panicle emergence.  The shape and length of panicle is normal. PO:0009047; stem ; PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Vegetative organ - Culm			GR:0060208		197.0	GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000165 - panicle exsertion, TO:0000576 - stem length, TO:0000145 - internode length, TO:0000207 - plant height	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020142 - stem internode 
518	ACS1	ACC1*, OsACS1, Os-ACS1, ACC1, OsACC1	ACC SYNTHASE 1	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1, 1-aminocyclopropane-1-carboxylate synthase 1, ACC synthase-1, S-adenosyl-L-methionine methylthioadenosine-lyase 1, 1-aminocyclopropane-1-carboxylic acid synthase 1	ACC SYNTHASE 1	osacs1-1, osacs1-2, osacs1-3	3	EC=4.4.1.14 A2XLL2(indica). Q10DK7(japonica). M96672, M96673. KC609230-KC609242 (O. sativa and wild rice species, partial cds). TO:0020102: phosphate content. GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Biochemical character,  Vegetative organ - Root,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os03g0727600	LOC_Os03g51740.1	GR:0060004			GO:0005737 - cytoplasm, GO:0009693 - ethylene biosynthetic process, GO:0009835 - ripening, GO:0016769 - transferase activity, transferring nitrogenous groups, GO:0030170 - pyridoxal phosphate binding, GO:0010446 - response to alkalinity, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0002213 - defense response to insect, GO:0008483 - transaminase activity, GO:0009058 - biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0009617 - response to bacterium, GO:0042742 - defense response to bacterium, GO:0009734 - auxin mediated signaling pathway, GO:0042594 - response to starvation, GO:0046687 - response to chromate, GO:0046689 - response to mercury ion, GO:0048364 - root development, GO:0010365 - positive regulation of ethylene biosynthetic process, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity	TO:0000227 - root length, TO:0000175 - bacterial blight disease resistance, TO:0000163 - auxin sensitivity, TO:0000481 - alkali sensitivity, TO:0001012 - lateral root length, TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance, TO:0000576 - stem length, TO:0000424 - brown planthopper resistance, TO:0000259 - heat tolerance	PO:0020103 - flag leaf , PO:0009005 - root , PO:0009006 - shoot system 
519	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1	ACTIN 1	Actin1, Actin-1, Actin1*(act1), actin 1, Actin 11	ACTIN 1		3	A2XLF2(indica). Q10DV7(japonica). ACT11 in the journal article (Jain et.al. BBRC, 2006) might be ACT1. S44221 (promoter sequence). X63830. X16280. X15865. LOC_Os03g50885.	 Biochemical character	Os03g0718100	LOC_Os03g50885.1	GR:0060010			GO:0015629 - actin cytoskeleton, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0003774 - motor activity, GO:0005856 - cytoskeleton, GO:0005515 - protein binding		
520	BL4	bl4	BROWN LEAF SPOT 4	brown leaf spot4, brown leaf spot 4, brown leaf spot-4			3	Relatively large brown spots appear on leaves. [499] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060085			GO:0015996 - chlorophyll catabolic process	TO:0000063 - mimic response, TO:0000326 - leaf color, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
522	CDC	cdc*, cdc	CDC2A PROTEIN	CDC2a protein	CDC2A PROTEIN		3		 Biochemical character			GR:0060111			GO:0000279 - M phase, GO:0004693 - cyclin-dependent protein kinase activity		
523	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsHTD2, OsD14, qPPB3, D88/D14, HTD4	DWARF KAMIKAWABUNWAI TILLERING	kamikawabunwai tillering dwarf, dwarf-14, DWARF14, dwarf 14, Dwarf 88, HIGH-TILLERING DWARF 2, Primary panicle branch number 3, high-tillering dwarf 4		d14, d14-1, d88, htd4htd4	3	"similar to \"bunketsu-waito\". GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. Q10QA5. GQ406388. GO:1901601:strigolactone biosynthetic process. alpha/beta-fold hydrolase. PDB code: 4IH9. a probable candidate SL receptor. GO:1902347: response to strigolactone. GO:1901698: response to nitrogen compound. GO:0036377: arbuscular mycorrhizal association. GO:1902347: response to strigolactone. GO:2000023: regulation of lateral root development."	 Vegetative organ - Root,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os03g0203200	LOC_Os03g10620.1, LOC_Os03g10620.3, LOC_Os03g10620.2	GR:0060196			GO:0007275 - multicellular organismal development, GO:0009755 - hormone-mediated signaling, GO:0048527 - lateral root development, GO:0042594 - response to starvation, GO:0009610 - response to symbiotic fungus, GO:0010223 - secondary shoot formation, GO:0016787 - hydrolase activity	TO:0002639 - shoot branching, TO:0000152 - panicle number, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000077 - shoot anatomy and morphology trait, TO:0000401 - plant growth hormone sensitivity, TO:0000576 - stem length, TO:0000544 - mesocotyl length, TO:0002688 - leaf lamina joint bending, TO:0000339 - stem thickness, TO:0000207 - plant height, TO:0000011 - nitrogen sensitivity	PO:0009047 - stem , PO:0006343 - axillary shoot system 
524	E3		HEADING DATE 3	Heading date3, Heading date 3, Heading date-3			3	HD6 is likely to be E3. PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060277			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence , PO:0009010 - seed 
525	GA14	ga14	GAMETOPHYTE GENE 14	gametophyte gene14, gametophyte gene 14, gametophyte gene-14		ga14-i, ga14-j, ga14-n	3	Gamete abortion expressed as an allelic interaction such as ga14-i/ga14-j. Segregation distortion in the F2 lines from three way cross suggests that gamete carrying ga14-j is aborted.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060356			GO:0019953 - sexual reproduction		
526	GA2	ga2	GAMETOPHYTE GENE 2	gametophyete gene2, gametophyete gene 2, gametophyte gene-2		Ga-A, Ga-B, Ga-C, ga	3		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060344			GO:0019953 - sexual reproduction		
527	GA3	ga3	GAMETOPHYTE GENE 3	gametophyte gene3, gametophyte gene 3, gametophyte gene-3			3		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060345			GO:0019953 - sexual reproduction		
528	GRHA	Grha(t)*, Grha, Grh2	GREEN RICE LEAFHOPPER RESISTANCE A	Green rice leafhopper resistance A, Green rice leafhopper resistance-2			3	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060433			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
529	HD6	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha	HEADING DATE 6	Heading date (QTL)-6(t), Heading date-6, Heading date6, casein kinase II alpha subunit, CK2alpha subunit 1, Casein Kinase 2alpha	ALPHA SUBUNIT OF PROTEIN KINASE CK2		3	Under long day (13.5hr) treatment, this QTL  introduced from Kasalath to Nipponbare increased the days to heading. Hd6 has an epistatic effect with Hd2. This is homoeologous to wheat vernalization gene vrn-A1 on chromosome 5A. AB036785, AB036786, AB036787, AB036788. MT453303 - MT453434. HD6 is likely to be E3. PO:0000230; inflorescence meristem ; PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. LOC_Os03g55389.	 Reproductive organ - Heading date	Os03g0762000	LOC_Os03g55389.1	GR:0060444			GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0004674 - protein serine/threonine kinase activity, GO:0004713 - protein tyrosine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0002616 - flowering time, TO:0000469 - days to maturity, TO:0000137 - days to heading	PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009082 - spikelet floret , PO:0000230 - inflorescence meristem 
530	L	L*	LETHAL FACTOR	Lethal factor			3		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0009566 - fertilization		
531	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA	PHYTOCHROME A	PhytochromeA, Phytochrome A, Phytochrome-A	PHYTOCHROME A	phyA-2, phyA-4, osphyA-4	3	A2XLG5 (indica). Q10DU0 (japonica). AB109891 (japonica). X14172. a rice ortholog of Arabidopsis gene for circadian clock component.	 Biochemical character	Os03g0719800	LOC_Os03g51030.3, LOC_Os03g51030.2, LOC_Os03g51030.1	GR:0060611			GO:0016020 - membrane, GO:0007602 - phototransduction, GO:0006355 - regulation of transcription, DNA-dependent, GO:0004871 - signal transducer activity, GO:0005739 - mitochondrion, GO:0004673 - protein histidine kinase activity, GO:0045449 - regulation of transcription, GO:0007623 - circadian rhythm, GO:0042803 - protein homodimerization activity, GO:0007165 - signal transduction, GO:0018106 - peptidyl-histidine phosphorylation, GO:0018298 - protein-chromophore linkage, GO:0017006 - protein-tetrapyrrole linkage, GO:0008020 - G-protein coupled photoreceptor activity, GO:0007600 - sensory perception, GO:0009585 - red, far-red light phototransduction, GO:0006350 - transcription, GO:0005524 - ATP binding, GO:0000155 - two-component sensor activity		
532	PMS2	pms2*(Pms2,pgms,ms2P), Pms2, ms2-P, pms2*, ms74	PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 2	photoperiod sensitive genic male sterile2, photoperiod sensitive genic male sterile 2, photoperiod-sensitive male sterility-2, male sterile-74			3	Male sterile under long-day conditions and fertile under short-day conditions. pgms. PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060679			GO:0007275 - multicellular organismal development, GO:0009649 - entrainment of circadian clock	TO:0000009 - genic male sterility-photoperiod sensitive	PO:0009046 - flower , PO:0009066 - anther 
533	POXCA	Pox cA*, Pox6	PEROXIDASE CA	Peroxidase cA (cloned gene), Peroxidase-cA(cloned gene), Peroxidase-cA, Peroxidase-6	PEROXIDASE CA		3	Peroxidase-CA (cloned DNA) ( Kishimoto et al. 1994a)	 Biochemical character			GR:0060690			GO:0004601 - peroxidase activity		
534	RCH10	RCH10*, Cht13, Cht12, Rcht2	BASIC CHITINASE 10	Rice basic chitinase 10, Chitinase-13, Chitinase12, Basic endochitinase 2 precursor, Basic endochitinase 2, Chitinase 12, Pathogenesis related (PR)-3 chitinase 12, Chitinase-12, Class II chitinase homologues	BASIC CHITINASE 10		3	Rice basic chitinase, Rice basic chitinase (class I). EC=3.2.1.14 PR-3 chitinase, pathogenesis related 3 chitinase. P25765.	 Biochemical character	Os03g0418000	LOC_Os03g30470.1	GR:0060725			GO:0050832 - defense response to fungus, GO:0016998 - cell wall macromolecule catabolic process, GO:0016231 - beta-N-acetylglucosaminidase activity, GO:0051707 - response to other organism, GO:0006040 - amino sugar metabolic process, GO:0006032 - chitin catabolic process, GO:0008843 - endochitinase activity, GO:0008061 - chitin binding, GO:0004568 - chitinase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle		
535	RL5	rl5(rl3), rl5, rl3, cul12	ROLLED LEAF 5	rolled leaf5, rolled leaf 5, rolled leaf-5, curl leaf-12			3	Leaf width is nearly normal, but rolled inside. Pale green between veins, showing stripes on a leaf blade. PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060768			GO:0030154 - cell differentiation	TO:0000370 - leaf width, TO:0000085 - leaf rolling, TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
536	S E1	s e1	HYBRID STERILITY-E-1	hybrid sterility-e-1, hybrid sterility-e1			3	gametophytic F1 sterility. duplicate. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060804			GO:0007275 - multicellular organismal development, GO:0000049 - tRNA binding	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
537	SC	Sc*, S-c, Hst18	F1 POLLEN STERILITY C	F1 pollen sterility-c, Hybrid sterility-18			3	one-locus sporogametophytic interaction.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060794			GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000436 - spikelet sterility	PO:0009046 - flower 
538	SH4	sh4, sh4(t)*(sh3), sh3, sh4	SHATTERING 4	shattering4, shattering 4, shattering-4, SHATTERING		Sh4	3	PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060876				TO:0000473 - grain shattering	PO:0009010 - seed 
539	SHP4	Shp4(Gb), Gb, Shp4	SHEATHED PANICLE 4	Sheathed panicle4, Sheathed panicle 4, Sheathed panicle-4			3	PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060888			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000145 - internode length, TO:0000165 - panicle exsertion	PO:0020142 - stem internode , PO:0009049 - inflorescence 
540	SOD	sod*, sod	SUPEROXIDE DISMUTASE	superoxide dismutase	SUPEROXIDE DISMUTASE		3		 Biochemical character			GR:0060899			GO:0004784 - superoxide dismutase activity		
541	ST3	st3(stl), stl, st, st3	STRIPE 3	stripe3, stripe 3, stripe-3			3	PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060930			GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000492 - leaf shape, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
542	V5	v5	VIRESCENT 5	virescent5, virescent 5, virescent-5			3	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060984			GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
543	V7	v7	VIRESCENT 7	virescent7, virescent 7, virescent-7			3	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060986			GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
544	Z9	z9	ZEBRA 9	zebra9, zebra 9, zebra-9			3	This mutant shows distinct yellow bands on leaf blades at 35-60 days after seeding. The bands disappear at later growth stages. The phenotype is very similar to that of z8. It is nonallelic to both z7 and z8. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0061055		189.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
545	D20	d20, dwf17	DWARF HAYAYUKI	hayayuki dwarf, dwarf-20			3	open tillers and sinuous culm and rachis. PO:0009047; stem ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Culm			GR:0060200			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0009047 - stem 
546	HG	Hg, Fg	HAIRY GLUME	Hairy glume			3	This gene conditions longer trichomes on the glumes, leaf margins, panicle branches and auricles.  The mutant trait is best expressed after flowering. [228],[299] PO:0020106; auricle ; PO:0009039; glume ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060446		29.0	GO:0007275 - multicellular organismal development	TO:0000417 - lemma and palea pubescence, TO:0000419 - leaf anatomy and morphology trait, TO:0000055 - leaf lamina pubescence	PO:0009088 - seed coat , PO:0009039 - glume , PO:0009025 - vascular leaf , PO:0020106 - leaf sheath auricle 
547	D52	d52(d K2), dK2, dwf33, d52	DWARF KYUSHU 2	dwarf Kyushu2, dwarf Kyushu 2, dwarf Kyushu-2, dwarf-52			3	"Dwarf originated from \"Kinmaze\" variety. Grain shape is nearly normal."	 Vegetative organ - Culm			GR:0060217		33.0	GO:0007275 - multicellular organismal development	TO:0000207 - plant height	
548	Z3	OsZ3, z3, SIET4, OsSIET4	ZEBRA 3	zebra3, zebra 3, zebra-3, silicon efflux transporter 4, Si efflux transporter 4	SILICON EFFLUX TRANSPORTER 4	z3, z3-1, z3-2, z3-3, siet4, siet4-1, siet4-2	3	GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. PO:0030123: panicle inflorescence. TO:0001109: grain color trait. TO:0001048: silicon content trait. TO:1000071: shoot system silicon content.	 Vegetative organ - Leaf,  Coloration - Others,  Biochemical character,  Seed - Morphological traits,  Coloration - Chlorophyll,  Reproductive organ - Heading date	Os03g0147400	LOC_Os03g05390.5, LOC_Os03g05390.6, LOC_Os03g05390.7, LOC_Os03g05390.8, LOC_Os03g05390.12, LOC_Os03g05390.13, LOC_Os03g05390.1, LOC_Os03g05390.2, LOC_Os03g05390.3, LOC_Os03g05390.4, LOC_Os03g05390.11, LOC_Os03g05390.10, LOC_Os03g05390.9	GR:0061049		33.0	GO:0007275 - multicellular organismal development, GO:0015746 - citrate transport, GO:0015995 - chlorophyll biosynthetic process, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0032523 - silicon efflux transmembrane transporter activity, GO:0048573 - photoperiodism, flowering, GO:0055085 - transmembrane transport	TO:0002616 - flowering time, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000339 - stem thickness, TO:0000069 - variegated leaf, TO:0000486 - seed color	PO:0025034 - leaf , PO:0006016 - leaf epidermis , PO:0009053 - peduncle , PO:0009005 - root , PO:0006325 - inflorescence node , PO:0005004 - shoot node , PO:0020104 - leaf sheath , PO:0009051 - spikelet , PO:0006000 - caryopsis hull , PO:0009047 - stem , PO:0020122 - inflorescence axis , PO:0009025 - vascular leaf 
549	DRP3	drp3	DRIPPING-WET LEAF 3	dripping-wet leaf3, dripping-wet leaf 3, dripping-wet leaf-3			3	Leaf surface appears wet. Water shedding area appears in tranversal patches on a leaf. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060243		33.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
550	SPL3	spl3(bl4), spl3, bl4	SPOTTED LEAF 3	spotted leaf3, spotted leaf 3, spotted leaf-3			3	Relatively small reddish brown spots scattering over the whole surface of leaves. They appear from tillering stage to heading time.  The phenotypes of spl3, spl5 and spl7 are similar, being difficult to distinguish each other. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060904		33.0	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
551	DRP4	drp4	DRIPPING-WET LEAF 4	dripping-wet leaf4, dripping-wet leaf 4, dripping-wet leaf-4			3	Leaf surface appears wet. Water shedding area appears in longitudinal stripes. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060244		43.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
554	D56	d56(d K7), dwf37, dK7, d56	DWARF KYUSHU 7	dwarf Kyushu7, dwarf Kyushu-7, dwarf Kyushu 7, dwarf-56			3	"Leaf shape is similar to \"daikoku dwarf\", but plant type is not elect as it is. Grain shape is almost round but not so small as \"daikoku dwarf\". PO:0009047; stem."	 Vegetative organ - Culm			GR:0060221		57.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000135 - leaf length, TO:0000207 - plant height	PO:0009047 - stem 
555	ST6	st6(t), st6	STRIPE 6	stripe6, stripe 6, stripe-6			3	This mutant exhibits fine yellow stripes on leaf blade and sheath through growing period and these stripes are also expressed on glumes. PO:0020104; leaf sheath ; PO:0009037; lemma ; PO:0009038; palea ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060933		66.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf, TO:0000264 - lemma and palea color	PO:0020104 - leaf sheath , PO:0009038 - palea , PO:0009037 - lemma , PO:0009025 - vascular leaf 
556	AL10	al10	ALBINO 10	albino10, albino 10, albino-10			3	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060029		73.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
557	AN3	An3	AWN 3	Awn3, Awn 3, Awn-3			3	Triplicate gene. PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060050		76.0	GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
559	CHL2	chl2	CHLORINA 2	chlorina2, chlorina 2, chlorina-2			3	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060119		77.0	GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
560	LKF	Lk f, Lkf	LONG KERNEL FUSAYOSHI	'Fusayoshi' long grain			3	incomplete dominance. This gene increases the length of grain to 1.3-1.4 times of the normal, the weight to 1.4-1.5 times. Almost no effect on the width and the thickness of grain. PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060505		87.0	GO:0007275 - multicellular organismal development	TO:0000146 - seed length, TO:0000181 - seed weight	PO:0009010 - seed 
561	MS7	ms7	MALE STERILE 7	male sterile7, male sterile 7, male sterile-7			3	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060544		108.0	GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
562	BC1	bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3	BRITTLE CULM 1	brittle culm1, BRITTLE CULM1, brittle culm-1, COBRA-like protein 5, Protein BRITTLE CULM1, Cell Wall Architecture 1, fragile plant 1, Phytochelatin synthase 3	COBRA-LIKE PROTEIN 5	bc1-2, bc1-1, cwa1, fp1, bc1-101	3	Culms and leaves are brittle and easy to be broken by bending. D47139, AY328909, AY328910. A2XHZ9(indica). Q10JL1(japonica). PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0000077; sclerenchyma cell ; PO:0009049; inflorescence ; PO:0009015; vascular tissue ; PO:0020039; leaf lamina ; PO:0009005; root ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Culm	Os03g0416200	LOC_Os03g30250.1	GR:0060068		108.0	GO:0005886 - plasma membrane, GO:0009808 - lignin metabolic process, GO:0009531 - secondary cell wall, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0031225 - anchored to membrane, GO:0009834 - secondary cell wall biogenesis	TO:0000051 - stem strength, TO:0000108 - leaf shattering, TO:0000061 - node shattering	PO:0020104 - leaf sheath , PO:0009015 - portion of vascular tissue , PO:0009005 - root , PO:0009025 - vascular leaf , PO:0000077 - sclerenchyma cell , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0020039 - leaf lamina 
564	MI	Mii, Mi1	MINUTE GRAIN	Minute grain, Minute grain-1			3	This gene reduces the length of grain to 70-80% and the weight to 60-70% of that of normal but almost no effect on the width and thickness.  Due to the extreme imbalance between the shortening in glume and ovary, the notch in grain is frequently found. N PO:0009049; inflorescence ; PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060525		128.0	GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000181 - seed weight, TO:0000146 - seed length	PO:0009010 - seed , PO:0009049 - inflorescence 
565	FC1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3	FINE CULM 1	fine culm1, fine culm 1, fine culm-1, lateral branching-1(t), teosinte-branching 1, Fine culm 1, teosinte branched1 protein, teosinte branched 1 protein, transcription factor OsTB1, teosinte branched1, FINE CULM1, MORE PANICLES 3	TEOSINTE BRANCHED1 PROTEIN 	fc1, fc1-1, fc1-2, ostb1	3	Many tillers with fine culm and normal height. [132]  This gene controls lateral branching of shoot system. OsTB1 is a countrpart of maize TB1 (TEOSINTE BRANCHED 1), being located on chromosome 3 closely linked with RFLP marker C944. Negatively regulate the lateral branching. transcription factor TCP family. a negative regulator of tiller bud outgrowth. AB088343.  AF322143, AY043215, AY286002. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage. GO:1901698: response to nitrogen compound. GO:1902347: response to strigolactone. GO:0090548: response to nitrate starvation. TO:0000952: stem weight. 	 Vegetative organ - Culm,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0706500 	LOC_Os03g49880.1	GR:0060322,GR:0080012		146.0	GO:0007049 - cell cycle, GO:0007275 - multicellular organismal development, GO:0009725 - response to hormone stimulus, GO:0009735 - response to cytokinin stimulus, GO:0048831 - regulation of shoot development, GO:0009733 - response to auxin stimulus, GO:0010229 - inflorescence development, GO:0009741 - response to brassinosteroid stimulus, GO:0030528 - transcription regulator activity, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling, GO:0007623 - circadian rhythm	TO:0000153 - relative yield, TO:0002639 - shoot branching, TO:0000576 - stem length, TO:0000621 - inflorescence development trait, TO:0000152 - panicle number, TO:0000027 - culm number, TO:0000661 - tiller bud dormancy, TO:0000329 - tillering ability, TO:0000167 - cytokinin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000346 - tiller number, TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000339 - stem thickness, TO:0000163 - auxin sensitivity, TO:0000456 - spikelet number, TO:0006032 - panicle size, TO:0000396 - grain yield	PO:0025034 - leaf , PO:0004709 - axillary bud , PO:0007041 - inflorescence emergence stage , PO:0009047 - stem , PO:0020148 - shoot apical meristem , PO:0000055 - bud , PO:0006343 - axillary shoot system , PO:0001083 - inflorescence development stage 
566	CHL3	chl3	CHLORINA 3	chlorina3, chlorina 3, chlorina-3			3	PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060120		168.0	GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
567	PGI1	Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a	PHOSPHOGLUCOISOMERASE 1	Phosphoglucoisomerase1, Phosphoglucoisomerase 1, Phosphoglucoisomerase-1, Glucose-6-phosphate isomerase, cytosolic A, Phosphoglucose isomerase A, Phosphohexose isomerase A	PHOSPHOGLUCOISOMERASE 1	Pgi1-0, Pgi1-1, Pgi1-2, Pgi1-3	3	Dimer. P(ST-H, PAGE-TC), L&C(ST-H). Interlocus hybrid bands occur. Differential allele frequencies between Indica and Japonica types. Thermomorphs are known. EC=5.3.1.9 P42862. D10411. D15816. D45217.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0776000	LOC_Os03g56460.1, LOC_Os03g56460.2, LOC_Os03g56460.3	GR:0060602		176.0	GO:0005829 - cytosol, GO:0006096 - glycolysis, GO:0004347 - glucose-6-phosphate isomerase activity, GO:0006094 - gluconeogenesis		
568	NAL6	Nal6, Cul6	NARROW LEAF 6	Narrow leaf6, Narrow leaf 6, Narrow leaf-6, Curl leaf-6			3	Dominant narrow leaf. Induced by MNU treatment on the variety 'Kinmaze'. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0060570		184.0	GO:0007275 - multicellular organismal development	TO:0000492 - leaf shape, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
569	GDH1	Gdh1	GLUTAMATE DEHYDROGENASE 1	Glutamate dehydrogenase1, Glutamate dehydrogenase 1, Glutamate dehydrogenase-1	GLUTAMATE DEHYDROGENASE 1	Gdh1-1, Gdh1-2	3	Hexamer. Homozygous genotypes are shown as one tight band, and heterozygous genotype as a broad band, respectively (trimeric form). Expressed in young root, plumule and slightly in mature leaf.	 Biochemical character			GR:0060361		184.0	GO:0004352 - glutamate dehydrogenase activity		
570	CHL1	chl1, chl1(ch1), ch1	CHLORINA 1	chlorina1, chlorina 1, chlorina-1			3	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060118		188.0	GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
571	AL5	al5, alK5	ALBINO 5	albino5, albino 5, albino-5			4	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060024			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
572	AL7	al7(t), alK7, al7	ALBINO 7	albino7, albino 7, albino-7			4	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060026			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
573	AN1	An1	AWN 1	Awn1, Awn 1, Awn-1			4	Triplicate gene. PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060048			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
574	AUL	aul	AURICLELESS	auricleless			4	This mutant lacks auricles, and the ligule is rudimentary.[228] PO:0020106; auricle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Leaf			GR:0060065			GO:0007275 - multicellular organismal development	TO:0000226 - auricleless, TO:0000335 - ligule shape, TO:0000024 - ligule length	PO:0020106 - leaf sheath auricle 
576	BPH2	bph2	BROWN PLANTHOPPER RESISTANCE 2	brown planthopper resistance 2, brown planthopper resistance-2			12	bph2 is resistant to brown plant hopper, being located on the short arm of chromosome 12 flanked by markers Kam3 and Kam4. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060090			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009025 - vascular leaf , PO:0009006 - shoot system 
577	DRP1	drp1	DRIPPING-WET LEAF 1	dripping-wet leaf1, dripping-wet leaf 1, dripping-wet leaf-1			4	Leaves appear wet due to the failure of wax layer formation on the leaf surface. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060241			GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
578	DRP8	drp8	DRIPPING-WET LEAF 8	dripping-wet leaf8, dripping-wet leaf 8, dripping-wet leaf-8			4	Leaf surface appears wet. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060248			GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
579	FLO	flo(t)*, flo3	FLOURY ENDOSPERM	floury endosperm, floury endosperm 3, floury endosperm-3			4	low allergenic protein. pleiotropy or tight linkage. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060332			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000196 - amylose content, TO:0000104 - floury endosperm, TO:0000266 - chalky endosperm	PO:0009089 - endosperm 
580	GA10	ga10(t), ga10	GAMETOPHYTE GENE 10	gametophyte gene10, gametophyte gene 10, gametophyte gene-10			4		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060352			GO:0019953 - sexual reproduction		
581	GA12	ga12	GAMETOPHYTE GENE 12	gametophyte gene12, gametophyte gene 12, gametophyte gene-12			4	Distorted segregation due to selective fertilization caused by ga12.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060354			GO:0019953 - sexual reproduction		
582	GLH	Glh(t)*, Glh, Glh14	GREEN LEAFHOPPER RESISTANCE	Green leafhopper resistance, Green leafhopper resistance-14			4	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060389			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
583	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3	GLUTELIN PRECURSOR 3	glutelin precursor3, glutelin precursor 3, glutelin precursor-3, vacuolar processing enzyme 1, legumain 3	CYSTEIN PROTEASE	Osvpe1	4	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice. AB109637. BAC76418. BAF15342. a seed-related legumain.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os04g0537900	LOC_Os04g45470.1	GR:0060413			GO:0008234 - cysteine-type peptidase activity, GO:0000327 - lytic vacuole within protein storage vacuole, GO:0045735 - nutrient reservoir activity, GO:0006508 - proteolysis	TO:0000490 - protein composition related trait, TO:0000109 - endosperm storage protein-2 content, TO:0000164 - stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000429 - salt sensitivity	PO:0009089 - endosperm 
584	GM2	Gm2, Gm-2, GM-2	GALL MIDGE RESISTANCE 2	Gall midge resistance2, Gall midge resistance 2, Gall midge resistance-2			4	Resistant to biotype 1 and 2 of gall midge. PO:0009011; plant structure ; PO:0000003; whole plant. Gm2 is mapped within 0.66 Mb region on chromosome 4 between the SSR markers RM17473 and RM17503 (Yasala et al. 2012).	 Tolerance and resistance - Insect resistance			GR:0060418			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
585	GPD2	gpd2*, gpd2	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 2	glyceraldehydephosphate dehydrogenase2, glyceraldehydephosphate dehydrogenase 2, glyceraldehyde-3-phosphate dehydrogenase-2	GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE 2		4		 Biochemical character			GR:0060431			GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, GO:0008943 - glyceraldehyde-3-phosphate dehydrogenase activity		
586	HPG1*	hpg1*, hpg1	HIGH PREPROGLUTELIN1	high preproglutelin1, high preproglutelin 1, high preproglutelin-1			4	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060449			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
587	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4, OsNAL1	NARROW LEAF 1	narrow leaf1, narrow leaf 1, narrow leaf-1, curl leaf-1, Green for photosysthesis, SPIKELET NUMBER		SPIKE, LSCHL4, NAL1- japonica, NAL1-indica, NAL1-Takanari, NAL1-1 to NAL1-16	4	duplicate or triplicate. Some narrow leaf strain is controlled by triplicate genes, nal1, nal2 and nal3. EU093963. the most likely candidate gene for qSCM4 (QTL Associated with Strong Culm).. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage. TO:0000820: leaf vein anatomy and morphology trait. TO:0000832: flag leaf anatomy and morphology trait.	 Reproductive organ - panicle,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0615000	LOC_Os04g52479.1, LOC_Os04g52479.2, LOC_Os04g52479.3	GR:0060565			GO:0009651 - response to salt stress, GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0007275 - multicellular organismal development	TO:0000262 - panicle shape, TO:0000396 - grain yield, TO:0000492 - leaf shape, TO:0000495 - chlorophyll content, TO:0000089 - panicle type, TO:0000370 - leaf width, TO:0000456 - spikelet number, TO:0000152 - panicle number, TO:0006001 - salt tolerance, TO:0006032 - panicle size, TO:0000447 - filled grain number, TO:0000346 - tiller number	PO:0009025 - vascular leaf , PO:0020103 - flag leaf 
588	NAL5	nal5(nal1), nal5, nal1, cul5	NARROW LEAF 5	narrow leaf5, narrow leaf 5, narrow leaf-5, curl leaf-5			4	Semi-dwarf with narrow and dark green leaves. [132] PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060569			GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000370 - leaf width, TO:0000576 - stem length, TO:0000492 - leaf shape, TO:0000207 - plant height, TO:0000299 - leaf lamina color	PO:0009047 - stem , PO:0009025 - vascular leaf 
589	ORYA	ocp*, ocp, OsOCP, OsORYA	ORYZAIN ALPHA CHAIN	oryzain alpha chain, Oryzain alpha chain precursor, oryzain alpha, Oryzain alpha-A	ORYZAIN ALPHA CHAIN	ocp-ko, ocp-ko1, ocp-ko2, ocp-ko3	4	EC=3.4.22.- D90406. P25776. DQ222400. D16051. the ortholog of the Arabidopsis protease RD21 (responsive to dehydration 21). a Papain-like cysteine protease (PLCP). GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0060918: auxin transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0650000	LOC_Os04g55650.1, LOC_Os04g55650.2	GR:0060580			GO:0004623 - phospholipase A2 activity, GO:0006508 - proteolysis, GO:0050832 - defense response to fungus, GO:0010039 - response to iron ion, GO:0009411 - response to UV, GO:0005737 - cytoplasm, GO:0004197 - cysteine-type endopeptidase activity, GO:0009611 - response to wounding, GO:0009737 - response to abscisic acid stimulus, GO:0010364 - regulation of ethylene biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0010929 - positive regulation of auxin mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0010105 - negative regulation of ethylene mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009845 - seed germination	TO:0000224 - iron sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0000074 - blast disease	PO:0009005 - root , PO:0007057 - 0 seed germination stage , PO:0020104 - leaf sheath , PO:0025034 - leaf 
590	PIN1	Pin1	PURPLE INTERNODE 1	Purple internode1, Purple internode 1, Purple internode-1			4	Make internode, leaf sheath, auricle and a part of leaf collar purpple. PO:0020104; leaf sheath ; PO:0020141; stem node ; PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060666			GO:0009812 - flavonoid metabolic process	TO:0000294 - auricle color, TO:0000364 - leaf collar color, TO:0000367 - basal leaf sheath color, TO:0000059 - node color, TO:0000426 - internode color	PO:0020142 - stem internode , PO:0020141 - stem node , PO:0020104 - leaf sheath , PO:0006012 - leaf collar , PO:0020106 - leaf sheath auricle 
591	PL2	pl2(t), pl2	PURPLE LEAF 2	purple leaf2, purple leaf 2, purple leaf-2			4	All plant parts, except the lemma and palea, are purple. Leaf blades and leaf sheaths are fully purple from seedling to maturity.  Recessive gene. [399] PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060672			GO:0009812 - flavonoid metabolic process	TO:0000299 - leaf lamina color, TO:0000264 - lemma and palea color, TO:0000326 - leaf color, TO:0000367 - basal leaf sheath color, TO:0000056 - stem color, TO:0000071 - anthocyanin content	PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009047 - stem 
592	R45S4	R45s4*, R45s4	45S RIBOSOMAL DNA 4	45s ribosomal DNA4, 45s ribosomal DNA 4, 45S ribosomal DNA-4			4		 Biochemical character			GR:0060718			GO:0000182 - rDNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
593	RK1	rk1	ROUND KERNEL 1	round kernel1, round kernel-1			4	Shorter and wider kernels compared with normal ones, showing the length-width ratio being 1.4. [131] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060761				TO:0000287 - brown rice shape, TO:0000391 - seed size, TO:0000149 - seed width	PO:0009010 - seed 
594	RL2	rl2, cul9	ROLLED LEAF 2	rolled leaf2, rolled leaf 2, rolled leaf-2, curl leaf-9			4	Leaf blade is rolled cylindrically. [282] PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060765			GO:0030154 - cell differentiation	TO:0000370 - leaf width, TO:0000492 - leaf shape, TO:0000085 - leaf rolling	PO:0009025 - vascular leaf 
595	SC2	s c2	HYBRID STERILITY-C-2	hybrid sterility-c-2, hybrid sterility-c2			4	PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060801			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
596	S E2	s e2	HYBRID STERILITY-E-2	hybrid sterility-e-2, hybrid sterility-e2			4	PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060805			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
597	SHO1	sho1, DCL4, OsDCL4, Os DCL4, Dcl4	SHOOT ORGANIZATION 1	shoot organization 1, shoot organization-1, shoot organization1, Endoribonuclease Dicer homolog 4, Dicer-like protein 4, Protein SHOOT ORGANIZATION 1, Oryza sativa dicer-like4, Oryza sativa dicer-like 4, Dicer like 4	DICER-LIKE PROTEIN 4	sho1-1, sho1-2, sho1-3, sho1-4, sho1-5, sho1-6, sho1-7, sho1-8, Osdcl4-1	4	Dicer-like protein, DICER. EC=3.1.26.-A7LFZ6. PO:0009009; embryo ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. an Ortholog of Arabidopsis DCL4. AB353922. EU009924. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Shoot apical meristem(SAM),  Seed - Morphological traits - Embryo	Os04g0509300	LOC_Os04g43050.4, LOC_Os04g43050.1	GR:0060883,GR:0101252			GO:0010492 - maintenance of shoot apical meristem identity, GO:0048608 - reproductive structure development, GO:0009887 - organ morphogenesis, GO:0042742 - defense response to bacterium, GO:0004525 - ribonuclease III activity, GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0003725 - double-stranded RNA binding, GO:0000287 - magnesium ion binding, GO:0009888 - tissue development, GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:0004252 - serine-type endopeptidase activity, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0030145 - manganese ion binding, GO:0050832 - defense response to fungus, GO:0007275 - multicellular organismal development	TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0000492 - leaf shape, TO:0000064 - embryo related trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
598	SHP5	shp5(t), shp5	SHEATHED PANICLE 5	sheathed panicle5, sheathed panicle 5, sheathed panicle-5			4	Panicle does not exsert.  Reduced number of tillers, round shape of spikelet and hairy glumes are accompanied with sheathed panicle. [RGN10:7] PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060889			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000145 - internode length, TO:0000165 - panicle exsertion, TO:0000089 - panicle type	PO:0020142 - stem internode , PO:0009049 - inflorescence 
599	SPR1	spr1	SPREADING PANICLE 1	spreading panicle1, spreading panicle-1			4	Primary panicle branches extend obliquely outward so that the panicles appear spreading. PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060913			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
600	SSK	ssk(sk), sk, ssk	SPIKELET SEMI-STERILE	malformed semisterile			4	PO:0009038; palea ; PO:0009062; gynoecium ; PO:0009037; lemma.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060926			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000437 - male sterility	PO:0009038 - palea , PO:0009037 - lemma , PO:0009062 - gynoecium 
601	ST7	st7	STRIPE 7	stripe7, stripe 7, stripe-7			4	This recessive mutant shows white stripes on leaves at germination.The stripes become more prominent at tillering stage and persist up to maturity. PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060934			GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
602	TSV1	tsv1(RTSV), RTSV, tsv1	RICE TUNGRO SPHERICAL VIRUS RESISTANCE 1	rice tungro spherical virus resistance1, rice tungro spherical virus resistance 1, rice tungro spherical virus resistance-1			4	Resistance to rice tungro spherical virus.	 Tolerance and resistance - Disease resistance			GR:0060970			GO:0009615 - response to virus	TO:0000413 - rice tungro virus resistance	
603	WH	Wh, Hw	WHITE HULL	White hull			4	Hull color is dull chalky white. PO:0009038; palea ; PO:0009088; seed coat ; PO:0009037; lemma. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0061001			GO:0043473 - pigmentation	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	PO:0009038 - palea , PO:0009037 - lemma , PO:0009088 - seed coat 
604	XA14	Xa14	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 14	Xanthomonas oryzae pv. oryzae resistance 14, Xanthomonas campestris pv. oryzae resistance-14, Xanthomonas oryzae pv. oryzae resistance-14			4	Resistant to Philippine  race 5, but susceptible to races 1, 2, 3, 4, and 6. [RGN5:5]	 Tolerance and resistance - Disease resistance			GR:0061022			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
605	YLM	ylm	YELLOW LEAF MARGIN	yellow leaf margin			4	Yellowish leaf margin manifested at the heading stage. [132] PO:0009025; leaf. GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0061044			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
606	Z5	z5	ZEBRA 5	zebra5, zebra 5, zebra-5			4	A heavy chlorosis occurs at the seeding stage and turns to the zebra bands around the fourth leaf stage. Though the green color recovers at the progressing stage, spikelets and anthers turn to whitish in the heading stage [184] PO:0006318; floret (sensu Poaceae) ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0061051			GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content, TO:0000264 - lemma and palea color	PO:0009025 - vascular leaf , PO:0009082 - spikelet floret 
607	LKI1	lk i1, lki1, lk-i-1	LONG KERNEL IRAT13 1	IRAT 13' long grain1, IRAT 13' long grain 1, 'IRAT 13' long grain-1			4	duplicate. Longer grain than that of Fusayoshi (Lk-f) and expressed as a recessive character. [RGN4:3]. The homozygote for lk-i-1 shows a grain length increase of more than 20% over that of Fusayoshi. [253] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060506			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
608	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11	DWARF SHINKANEAIKOKU OR NOHRIN 28	shinkaneaikoku or nohrin 28 dwarf, DWARF SHINKANEAIKOKU OR NOHRIN 28, OsDWARF11, dwarf-11, Cytochrome P450 724B1, Dwarf protein 11, cytochrome P450 CYP724B1, DWARF11, grain number and size on chromosome 4, Panicle Morphology Mutant 1, Notched Belly Grain 4, CLUSTERED PRIMARY BRANCH 1	CYTOCHROME P450 724B1	m107, d11, d11-1, d11-2, d11-3, gns4, pmm1, pmm1-1, pmm1-2, pmm1-3, nbg4, cpb1	4	Q6F4F5. AB158759. Slightly dwarf.  Small and round grain.  Sparse grain setting on a panicle. EC=1.14.-.- GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.TO 0000847: panicle inflorescence morphology trait. TO:0000845: collective phyllome structure morphology trait. TO:0000847: panicle inflorescence morphology trait.  TO:0000970: panicle density.  TO:0000789: bud morphology trait.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Inflorescence,  Seed - Morphological traits,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Taste,  Reproductive organ - Heading date,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os04g0469800	LOC_Os04g39430.1, LOC_Os04g39430.2	GR:0060193		10.0	GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016132 - brassinosteroid biosynthetic process, GO:0006826 - iron ion transport, GO:0016021 - integral to membrane, GO:0009742 - brassinosteroid mediated signaling, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008199 - ferric iron binding, GO:0009741 - response to brassinosteroid stimulus, GO:0007275 - multicellular organismal development, GO:0006879 - cellular iron ion homeostasis, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009055 - electron carrier activity, GO:0051607 - defense response to virus, GO:0004497 - monooxygenase activity, GO:0022900 - electron transport chain, GO:0009647 - skotomorphogenesis, GO:0048573 - photoperiodism, flowering, GO:0010029 - regulation of seed germination, GO:0055114 - oxidation reduction, GO:0009826 - unidimensional cell growth, GO:0009753 - response to jasmonic acid stimulus, GO:0020037 - heme binding, GO:0051512 - positive regulation of unidimensional cell growth	TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000139 - grains per panicle, TO:0002730 - grain shape, TO:0000180 - spikelet fertility, TO:0000657 - spikelet anatomy and morphology trait, TO:0000547 - primary branch number, TO:0000050 - inflorescence branching, TO:0000455 - seed set percent, TO:0002677 - brassinosteroid sensitivity, TO:0000501 - spikelet weight, TO:0000557 - secondary branch number, TO:0000576 - stem length, TO:0000052 - primary branching of inflorescence, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0002676 - brassinosteroid content, TO:0000484 - seed shape, TO:0000456 - spikelet number, TO:0000641 - primary branch length, TO:0000397 - grain size, TO:0000329 - tillering ability, TO:0000396 - grain yield, TO:0000592 - 1000-dehulled grain weight, TO:0000020 - black streak dwarf virus resistance, TO:0000371 - yield trait, TO:0000145 - internode length, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000276 - drought tolerance, TO:0000206 - leaf angle, TO:0000391 - seed size, TO:0000346 - tiller number	PO:0009047 - stem , PO:0020122 - inflorescence axis , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0006321 - primary inflorescence branch , PO:0020142 - stem internode 
609	DRP5	drp5	DRIPPING-WET LEAF 5	dripping-wet leaf5, dripping-wet leaf 5, dripping-wet leaf-5			4	Leaf surface appears wet. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060245		10.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
610	RCN2	rcn2	REDUCED CULM NUMBER 2	reduced culm number2, reduced culm number 2, reduced culm number-2			4	Few tillers in both low and high temperature conditions. [RGN4:4]. Panicle number is usually reduced to 50% of that of the original variety, Shiokari,  and plant height is slightly reduced.  The character shows no respone to temperature. [256] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060727		14.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000346 - tiller number, TO:0000576 - stem length, TO:0000152 - panicle number, TO:0000207 - plant height	PO:0009047 - stem 
611	MLS3	mls3	MALFORMED LEMMA 3	malformed spikelet3 (lemma3 ?), malformed spikelet 3, malformed spikelet-3			4	Abnormality of lemma and palea caused by low temperature. PO:0009051; spikelet ; PO:0000003; whole plant ; PO:0009037; lemma ; PO:0009038; palea.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn			GR:0060529		28.0	GO:0007275 - multicellular organismal development	TO:0000432 - temperature response trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000436 - spikelet sterility	PO:0009051 - spikelet , PO:0009038 - palea , PO:0009037 - lemma , PO:0000003 - whole plant 
612	P	P(Pa,Pb,Pc), A, Pa	COLORED APICULUS	Colored apiculus		P-K, P-C	4	Activates C and A at apiculus. As a result, anthocyanin pigmentation occurs at apiculus. PO:0006033; paleal apiculus. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060592		37.0	GO:0009812 - flavonoid metabolic process	TO:0000140 - apiculus color	PO:0006033 - paleal apiculus 
613	PS2	Ps2(Ps1), Ps1, Ps2	PURPLE STIGMA 2	Purple stigma2, Purple stigma 2, Purple stigma-2			4	Make stigma purple. PO:0006497; stigma epidermis (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060704		46.0	GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0006061 - stigma epidermis 
614	PR	Pr(Rp), Rp, Pr	PURPLE HULL	Purple hull			4	Responsible for distributing color over the entire surface of floral glumes, ie. lemma and palea, and in some cases the rachilla. [298] PO:0009038; palea ; PO:0009088; seed coat ; PO:0009037; lemma. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060691		50.0	GO:0009812 - flavonoid metabolic process	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	PO:0009088 - seed coat , PO:0009037 - lemma , PO:0009038 - palea 
615	D31	d31, dwf27	DWARF TAICHUNG 155 IRRADIATED	taichung 155 irradiated dwarf, taichung-155-irradiated dwarf, dwarf-31			4	Plant height is about 70 cm with narrow and dark green leaves. PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060210		56.0	GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000299 - leaf lamina color, TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000326 - leaf color, TO:0000576 - stem length	PO:0009047 - stem , PO:0009025 - vascular leaf 
616	NAL4	nal4(nal), nal4, nal, cul4	NARROW LEAF 4	narrow leaf4, narrow leaf 4, narrow leaf-4, curl leaf-4			4	PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0060568		63.0	GO:0007275 - multicellular organismal development	TO:0000370 - leaf width, TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
617	XA2	Xa2	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 2	Xanthomonas oryzae pv. oryzae resistance 2, Xanthomonas campestris pv. oryzae resistance-2, Xanthomonas oryzae pv. oryzae resistance-2			4	Resistant to the Japanese Isolate Group II.	 Tolerance and resistance - Disease resistance			GR:0061012		64.0	GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
618	XA12	Xa12(Xa kg), Xakg, Xa12	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 12	Xanthomonas oryzae pv. oryzae resistance 12, Xanthomonas campestris pv. oryzae resistance-12, Xanthomonas oryzae pv. oryzae resistance-12		Xa12-h (Xa kg-h)	4		 Tolerance and resistance - Disease resistance			GR:0061020		66.0	GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
619	XA1	Xa1(Xe), Xe, Xa1, Xa-1	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 1	Xanthomonas oryzae pv. oryzae resistance 1, Xanthomonas campestris pv. oryzae resistance-1, Xanthomonas oryzae pv. oryzae resistance-1		Xa1-h, xa1	4	Resistant to the Japanese Isolate Group I. [368]. AB002266. PO:0009025; leaf. Xa1 is a member of the NBS-LRR class of plant diseaseresistance genes (Yoshimura et al. 1998).	 Tolerance and resistance - Disease resistance	Os04g0622600	LOC_Os04g53120.1	GR:0061011		68.0	GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0006952 - defense response, GO:0002237 - response to molecule of bacterial origin, GO:0032490 - detection of molecule of bacterial origin, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0006915 - apoptosis	TO:0000175 - bacterial blight disease resistance	PO:0009025 - vascular leaf 
620	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1	BLACK HULL C	Phenol staining, polyphenol oxidase, PPO enzyme, BLACK HULL1	POLYPHENOL OXIDASE	phr1	4	Color of glume and caryopsis becomes dark brown with 1% Phenol solution.  Black ripening color of floral glumes. Complementary action of three genes, Bha, Bhb, and Bhc. PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.MH63 (DQ532375), Nipponbare (DQ532376), CJ06 (DQ532377), Jl506 (DQ532378), Jnxn (DQ532379), Qfn (DQ532380), R4 (DQ532381), Saon (DQ532382), Sun (DQ532383), Tx3 (DQ532384), Tx36 (DQ532385), Tzn (DQ532386), w11 (DQ532387), Zh11(DQ532388), Zhen5125 (DQ532389), dl (DQ532390), 93-11 (DQ532391), GLA (DQ532392), k2406d (DQ532393), k2406f (DQ532394), Tx7 (DQ532395), Tx9 (DQ532396), A3 (DQ532397), A8 (DQ532398), G01037 (DQ532399), G01049 (DQ532400), G01054 (DQ532401), G01060 (DQ532402), G01067 (DQ532403), G01084 (DQ532404), G02016 (DQ532405), G02068 (DQ532406), G02104 (DQ532407), G02115 (DQ532408), G02177 (DQ532409), G12 (DQ532410), G25 (DQ532411), G30 (DQ532412), G40 (DQ532413), G52030 (DQ532414), G7113 (DQ532415), G7134 (DQ532416), G7232 (DQ532417), G7251 (DQ532418), G9014 (DQ532419), w0009 (DQ532420), w0154d (DQ532421), w0154f (DQ532422), w0509 (DQ532423), w0634d (DQ532424), w0634f (DQ532425), w1 (DQ532426), w1125 (DQ532427), w1727 (DQ532428), w1862 (DQ532429), w6 (DQ532430), yaoyong (DQ532431), and G7 (DQ532432). LOC_Os04g53300.	 Coloration - Others	Os04g0624500	LOC_Os04g53300.1	GR:0060081		74.0	GO:0016051 - carbohydrate biosynthetic process, GO:0043473 - pigmentation	TO:0000190 - seed coat color, TO:0000062 - phenol reaction, TO:0000264 - lemma and palea color, TO:0000706 - hull color	PO:0009089 - endosperm , PO:0009088 - seed coat 
621	SH3	Sh3	SHATTERING 3	Shattering3, Shattering 3, Shattering-3		Sh3	4	Seed shed when matured similarly as a wild rice. PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060875		80.0		TO:0000473 - grain shattering	PO:0009010 - seed 
622	SPR3	Spr3(t), Spr3	SPREADING PANICLE 3	Spreading panicle3, Spreading panicle-3			4	Primary branches spread after flowering. [RGN7:18] PO:0009049; inflorescence. Spr3 may serve as a gene encoding microRNA, controlling rice inflorescence development. (Luo et al. 2008)  EU365774 (Oryza glaberrima cultivar CG14). Ishii et al. localized the SPR3 locus to a 9.3-kb genomic region, and their complementation tests suggest that this region regulates the liguleless gene (OsLG1).	 Character as QTL - Yield and productivity,  Reproductive organ - Inflorescence			GR:0060915		82.0	GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
623	D42	d42, dwf31	DWARF LIGULELESS	liguleless dwarf, dwarf-42			4	Liguleless and plant height is about 25 cm with narrow and dark green leaves. PO:0020105; ligule ; PO:0009047; stem ; PO:0009010; seed ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060214		85.0	GO:0007275 - multicellular organismal development	TO:0000391 - seed size, TO:0000299 - leaf lamina color, TO:0000235 - liguleless, TO:0000576 - stem length, TO:0000370 - leaf width, TO:0000207 - plant height, TO:0000024 - ligule length	PO:0020105 - ligule , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009010 - seed 
624	PIKUR1	Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1	PYRICULARIA ORYZAE RESISTANCE-KUR-1	Pyricularia oryzae resistance-kur-1, Magnaporthe grisea resistance-kur1, Blast resistance kur1			4	Field resistance gene to rice blast found in cv. 'Kuroka'.  Additive with Pi Kur2. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060620		86.0	GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000514 - potassium uptake	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
625	PS1	Ps1	PURPLE STIGMA 1 (GAISENMOCHI)	Purple stigma1 (Gaisenmochi), Purple stigma 1, Purple stigma-1(Gaisenmochi)1, Purple stigma-1			4	Make stigma purple. Expressed without P.[347] PO:0006497; stigma epidermis (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060703		89.0	GO:0009812 - flavonoid metabolic process	TO:0000185 - stigma color	PO:0006061 - stigma epidermis 
626	ST4	st4(ws2), ws2, st4	STRIPE 4	stripe4, stripe 4, stripe-4			4	This mutant exhibits white leaf tip at the seedling stage and white stripes on leaf with white midrib during growth. White stripes also appear on panicle. PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060931		90.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000495 - chlorophyll content	PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
627	GA6	ga6	GAMETOPHYTE GENE 6	gametophyte gene6, gametophyte gene 6, gametophyte gene-6			4		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060348		91.0	GO:0019953 - sexual reproduction		
628	LG	lg	LIGULELESS	liguleless		lg-a	4	Ligule, auricle and leaf collar are absent. [298] . Allele lg-a has very short ligules, underdeveloped auricles, narrow leaf collars, and erect stature.  Similar to but different from the gene aul.  Order of dominancy is lg+ > lg-a > lg. [247] PO:0020105; ligule ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Leaf			GR:0060496		95.0	GO:0007275 - multicellular organismal development	TO:0000335 - ligule shape, TO:0000024 - ligule length	PO:0009025 - vascular leaf , PO:0020105 - ligule 
629	FLO2	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2, FLO2-1, FLO2-2	FLOURY ENDOSPERM 2	floury endosperm2, floury endosperm 2, floury endosperm-2, Floury 2		flo2, flo2(CNY8-1), flo2(CNY8-2), flo2(CNY8-3)	4	Endosperm is floury white. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Character as QTL - Yield and productivity,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Seed - Morphological traits - Grain shape	Os04g0645100	LOC_Os04g55230.1	GR:0060331		105.0	GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain, GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0009085 - lysine biosynthetic process	TO:0000105 - dull endosperm, TO:0002661 - seed maturation, TO:0000266 - chalky endosperm, TO:0000615 - abscisic acid sensitivity, TO:0000162 - seed quality, TO:0000391 - seed size, TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0000196 - amylose content, TO:0000104 - floury endosperm, TO:0000590 - grain weight, TO:0000490 - protein composition related trait, TO:0000397 - grain size	PO:0009089 - endosperm 
631	PRPB	Prpb(Pb), Pb, Prpb, Prp2	PURPLE PERICARP-B	Purple pericarp-b, Purple pericarp-2			4	Make pericarp purple in complementary action with Prp-a. If Prp-b alone, pericarp is colored brown. [84] Purple pericarp. PO:0009088; seed coat. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin			GR:0060699		127.0	GO:0009812 - flavonoid metabolic process	TO:0000190 - seed coat color	PO:0009088 - seed coat 
632	PL	Pl, Pl1	PURPLE LEAF	Purple leaf, Purple leaf-1		Pl-w, Pl-i, Pl-j	4	Make leaf blade, leaf sheath, leaf collar, auricles, ligule, node and internode purple.  Pl-w and Pl-i are alleles at Pl locus. Pl-w makes leaf blade, leaf sheath, auricles, ligule,  and pericarp purple. Pl-i makes leaf blade, leaf sheath, ligule and internode colored. PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar ; PO:0009025; leaf ; PO:0020105; ligule ; PO:0020104; leaf sheath ; PO:0020141; stem node. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. OSB1 (Os04g0557800) and OSB2 (Os04g0557500) are the major components of the Plw allele (Sakamoto et al. 2001).	 Coloration - Anthocyanin	Os04g0557800/Os04g0557500	LOC_Os04g47080.1/LOC_Os04g47059.1	GR:0060671		127.0	GO:0009812 - flavonoid metabolic process	TO:0000294 - auricle color, TO:0000059 - node color, TO:0000364 - leaf collar color, TO:0000367 - basal leaf sheath color, TO:0000299 - leaf lamina color, TO:0000197 - ligule color, TO:0000426 - internode color	PO:0020104 - leaf sheath , PO:0006012 - leaf collar , PO:0009025 - vascular leaf , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0020141 - stem node , PO:0020142 - stem internode 
633	ST5	st5	STRIPE 5	stripe5, stripe 5, stripe-5			4	This mutant exhibits fine stripes on leaf blade and sheath through growing period and these stripes are also expressed in glumes. PO:0009037; lemma ; PO:0009038; palea ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060932		165.0	GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process	TO:0000264 - lemma and palea color, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009037 - lemma , PO:0009025 - vascular leaf , PO:0009038 - palea 
634	D3	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3, OsFBL27, FBL27	DWARF BUNKETSUWAITO TILLERING	bunketsuwaito tillering dwarf, dwarf-3, F-box/LRR-repeat MAX2 homolog, F-box and leucine-rich repeat MAX2 homolog, DWARF 3, DWARF-3, suppressor of lazy1, DWARF3, ORESARA 9, MAX2 ortholog, F-box-type E3 ubiquitin ligase L27	F-BOX/LRR-REPEAT MAX2 HOMOLOG	Osd3, d3, d3-1, d3-2, d3-3, sol1, sol1-1, sol1-2, d3 300097, gsor300097	6	Profuse tillering with slender leaves. Duplicate or triplicate. Q5VMP0. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.  F-box protein. a rice homolog of Arabidopsis ORESARA 1. an F-box component of the Skp-Cullin-F-box (SCF) E3 ubiquitin ligase complex.  GO:0090548: response to nitrate starvation. GO:1901698: response to nitrogen compound. GO:1902347: response to strigolactone. PRJNA593368 in the Gene Expression Omnibus database. GO:0080167: response to karrikin. GO:0036377: arbuscular mycorrhizal association. GO:2000023: regulation of lateral root development.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os06g0154200	LOC_Os06g06050.1	GR:0060186		168.0	GO:0007275 - multicellular organismal development, GO:0009755 - hormone-mediated signaling, GO:0042594 - response to starvation, GO:0009610 - response to symbiotic fungus, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0010223 - secondary shoot formation, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0048527 - lateral root development, GO:0010016 - shoot morphogenesis, GO:0009651 - response to salt stress, GO:0009851 - auxin biosynthetic process, GO:0009959 - negative gravitropism, GO:0009934 - regulation of meristem structural organization, GO:0009926 - auxin polar transport, GO:0005634 - nucleus, GO:0009646 - response to absence of light, GO:0009416 - response to light stimulus	TO:0000152 - panicle number, TO:0000460 - light intensity sensitivity, TO:0000207 - plant height, TO:0000567 - tiller angle, TO:0000077 - shoot anatomy and morphology trait, TO:0000011 - nitrogen sensitivity, TO:0006001 - salt tolerance, TO:0000586 - seminal root length, TO:0002672 - auxin content, TO:0002688 - leaf lamina joint bending, TO:0000346 - tiller number, TO:0006036 - stem elongation, TO:0002639 - shoot branching, TO:0000370 - leaf width, TO:0001013 - lateral root number, TO:0000401 - plant growth hormone sensitivity, TO:0000249 - leaf senescence, TO:0000329 - tillering ability, TO:0000576 - stem length, TO:0000544 - mesocotyl length, TO:0002693 - gravity response trait	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0006343 - axillary shoot system 
635	ACS3	ACC3*, ACC3, OsACS3, OS-ACS3, OsACC3	ACC SYNTHASE 3	ACC synthase 3, ACC synthase-3, 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 3, 1-aminocyclopropane-1-carboxylic acid synthase 3	ACC SYNTHASE 3		5	U65702. GO:1904585: response to putrescine.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0196600	LOC_Os05g10780.1	GR:0060005			GO:0009617 - response to bacterium, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0009693 - ethylene biosynthetic process, GO:0042742 - defense response to bacterium, GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding, GO:0009058 - biosynthetic process	TO:0000175 - bacterial blight disease resistance	PO:0009005 - root 
636	ALD1	Ald1*, Ald1	ALDOLASE 1	Aldolase1, Aldolase 1, Aldolase-1	ALDOLASE 1		5		 Biochemical character			GR:0060031			GO:0016832 - aldehyde-lyase activity		
637	AN2	An2	AWN 2	Awn2, Awn 2, Awn-2			5	triplicate gene. PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060049			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
638	ARF1	Arf1*, Arf1, ARF-1	ADP RIBOSYLATION FACTOR 1	ADP ribosylation factor(ARF)1, ADP ribosylation factor (ARF)-1, ADP ribosylation factor-1, ribosylation factor 1	ADP RIBOSYLATION FACTOR 1		5		 Biochemical character			GR:0060060			GO:0006886 - intracellular protein transport, GO:0006471 - protein amino acid ADP-ribosylation		
639	ATP	ATP*(atp1), ATPX, atp1	ATPASE SUBUNIT 1	ATPase	ATPASE SUBUNIT 1		5		 Biochemical character			GR:0060063			GO:0016887 - ATPase activity		
640	BC2	bc2, bc-2	BRITTLE CULM 2	brittle culm2, brittle culm 2, brittle culm-2			5	The culms and leaves of this recessive mutant break very easily.  The mutant character is expressed at all stages of growth. PO:0009047; stem ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060069		87.0	GO:0009531 - secondary cell wall, GO:0009808 - lignin metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009834 - secondary cell wall biogenesis, GO:0005886 - plasma membrane, GO:0031225 - anchored to membrane	TO:0000061 - node shattering, TO:0000051 - stem strength, TO:0000108 - leaf shattering	PO:0009025 - vascular leaf , PO:0009047 - stem 
641	BD1	bd1	BEAKED LEMMA 1	beaked lemma1, beaked lemma 1, beaked lemma-1			5	The tip of lemma bends as beak shape. Duplicate gene with bd-2. PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060074			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009038 - palea , PO:0009037 - lemma 
642	CALA	CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1	CALMODULIN A	Calmodulin-1, Calmodulin-a, Calmodulin-2, calmodulin 2	CALMODULIN A		5	Q6F332(japonica), A2Y609(indica). C73257. D10434 (partial cds). D15295. AF441190. OsCaM1 in Li et al. 2006.	 Biochemical character	Os05g0491100	LOC_Os05g41210.1	GR:0060107			GO:0005509 - calcium ion binding, GO:0009612 - response to mechanical stimulus, GO:0005886 - plasma membrane, GO:0005634 - nucleus		
643	CHT2	Cht2*, Cht2, RC7, OsChia1b, Chia1b, CHIT17, OsCHIT17	CHITINASE 2	Chitinase 2, Pathogenesis related (PR)-3 chitinase 2 ; Class I chitinase b, Chitinase-2(class I)	CHITINASE 2		5	EC=3.2.1.14 PR-3 chitinase. pathogenesis related 3 chitinase. Q7DNA1. CHIT17 in Mahesh et al. 2021.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0399300	LOC_Os05g33130.1	GR:0060134			GO:0008843 - endochitinase activity, GO:0002213 - defense response to insect, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008061 - chitin binding, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0050832 - defense response to fungus, GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process, GO:0051707 - response to other organism	TO:0000424 - brown planthopper resistance, TO:0000468 - leaf blast disease resistance	
644	EM	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1	ABA REGULATED GENE	ABA regulated gene, ABA-regulated gene, Embryonic abundant protein 1, Em protein, Early methionine labelled polypeptide, Abscisic acid induced protein, Embryogenic protein, late embryogenesis abundant protein 21	EMBRYONIC ABUNDANT PROTEIN 1		5	expressed late in embryogenesis. P46520. OSEM is one of rice LEA genes and is activated by OSVP1 and ABA. U22102. X63126. OSU22102. a group I LEA protein. GO:2000070: regulation of response to water deprivation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0349800	LOC_Os05g28210.1	GR:0060291			GO:0009738 - abscisic acid mediated signaling, GO:0048700 - acquisition of desiccation tolerance, GO:0009415 - response to water, GO:0047484 - regulation of response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009688 - abscisic acid biosynthetic process, GO:0009409 - response to cold	TO:0000095 - osmotic response sensitivity, TO:0000237 - water stress trait, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
645	ER	er(o), o, er	ERECT GROWTH HABIT	erect growth habit			5	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060298			GO:0040007 - growth	TO:0000427 - culm angle	PO:0009047 - stem 
646	EST13	Est13	ESTERASE 13	Esterase13, Esterase 13, Esterase-13	ESTERASE 13	Est13-1, Est13-2	5	Monomers. P(PAGE-TC). The band migrates slower than that of Est10, expressed as a beta-NAc-specific red double band.	 Biochemical character			GR:0060317			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
647	EUI1	eui1, GA16, 17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI, LG5, OsLG5	ELONGATED UPPERMOST INTERNODE 1	elongated uppermost internode, elongated uppermost internode-1, Elongation of Upper most Internode, ELONGATED UPPERMOST INTERNODE1, dwarf Eui1, long grain 5	CYTOCHROME CYP714D1	eui1, qui, dEui1, eui, eui-c1, eui-c2, lg5	5	This character is manifested only at flowering.  The uppermost node is elongated. [228]   a target of osa-miR1846 (osa-miR1846a-5p and osa-miR1846b-5p). AY987039, AY987040. Eui gene encodes a previously uncharacterized cytochrome P450 monooxygenase, CYP714D1. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.TO: 0000870: leaf yield trait.  TO:0006049: iron concentration. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os05g0482400	LOC_Os05g40384.1	GR:0060320		125.0	GO:0010229 - inflorescence development, GO:0001558 - regulation of cell growth, GO:0005783 - endoplasmic reticulum, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0042127 - regulation of cell proliferation, GO:0004497 - monooxygenase activity, GO:0032940 - secretion by cell, GO:0009685 - gibberellin metabolic process, GO:0010106 - cellular response to iron ion starvation, GO:0045487 - gibberellin catabolic process, GO:0009826 - unidimensional cell growth, GO:0009651 - response to salt stress, GO:0022900 - electron transport chain, GO:0007275 - multicellular organismal development	TO:0000145 - internode length, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0001002 - inflorescence exsertion, TO:0000734 - grain length, TO:0000124 - flag leaf angle, TO:0000040 - panicle length, TO:0000576 - stem length, TO:0000621 - inflorescence development trait, TO:0000224 - iron sensitivity, TO:0000397 - grain size, TO:0002675 - gibberellic acid content, TO:0006001 - salt tolerance	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0007112 - 1 main shoot growth stage , PO:0020104 - leaf sheath , PO:0020103 - flag leaf , PO:0007089 - stem elongation stage , PO:0020142 - stem internode 
648	GH1	gh1, hg	GOLD HULL AND INTERNODE 1	gold hull and internode1, gold hull and internode 1, gold hull and internode-1			5	Make glume and internode gold. PO:0020142; stem internode ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060365				"TO:0000190_TO:0000426 - \"seed coat color\" or \"internode color\", TO:0000264 - lemma and palea color, TO:0000426 - internode color"	PO:0020142 - stem internode , PO:0009010 - seed 
649	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3, LSY1, OsLSY1, DEP, OsDEP	GLABROUS LEAF AND HULL 1	glabrous leaf and hull1, glabrous leaf and hull 1, glabrous leaf and hull-1, WUSCHEL-related homeobox 3B, leaf lateral symmetry-1, LEAF LATERAL SYMMETRY1, DEPILOUS		gl1-1, gl1-2, gl1-3, gl1-4, lsy1	5	duplicate gene. Glabrous leaf and floral glumes with no pubescence. [298] The gl1 gene is located between SSR markers RM1200/RM17786 and RM2010/RM17801 on chromosome 5. OsWOX2 in Dai et al. 2007. OsWOX3B in Zhang et al. 2012, Sun et al. 2017.  OsWOX3 in Ohmoriet al. 2013, Bakshi et al. 2017. Q5W7C3, A2XZR3. AM490244. GO:2000039: regulation of trichome morphogenesis. TO:0000748: leaf morphology trait. lsy1 mutant showed two major phenotypes of leaves; a narrow leaf due to the deletion of a part or whole of one lateral half, and a bifurcated leaf in which an additional midrib is formed in one lateral half. Homozygous lys1 plants were sterile. GO:0099402: plant organ development.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf	Os05g0118700	LOC_Os05g02730.1	GR:0060368			GO:0009955 - adaxial/abaxial pattern formation, GO:0043565 - sequence-specific DNA binding, GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent, GO:0030154 - cell differentiation, GO:0010090 - trichome morphogenesis, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0048366 - leaf development	 - palea pubescence, TO:0000492 - leaf shape, TO:0000655 - leaf development trait, TO:0000358 - female sterility, TO:0000370 - leaf width, TO:0000417 - lemma and palea pubescence, TO:0000055 - leaf lamina pubescence	PO:0009038 - palea , PO:0020039 - leaf lamina , PO:0001050 - leaf development stage , PO:0009025 - vascular leaf , PO:0009062 - gynoecium , PO:0009037 - lemma 
650	GLH6	Glh6	GREEN LEAFHOPPER RESISTANCE 6	Green leafhopper resistance6, Green leafhopper resistance 6, Green leafhopper resistance-6			5	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060381			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
651	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a, GPA1, OsGPA1	GLUTELIN PRECURSOR 4	glutelin precursor4, glutelin precursor 4, glutelin precursor-4, small GTP-binding protein OsRab5B2, small GTP-binding protein OsRab5a, glutelin precursor mutant4, glutelin precursor accumulation 1	GLUTELIN PRECURSOR 4	gpa1, glup4/rab5a, glup4, rab5a	12	High content of 57kDa polypeptide (glutelin precursor polypeptide) with low content of 40kDa and 20kDa polypeptides. This gene is located on chromosome 12 in 5.9cM interval between PCR markers L714 and C901. PO:0009010; seed. AY029301.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os12g0631100	LOC_Os12g43550.2, LOC_Os12g43550.1	GR:0060414			GO:0045735 - nutrient reservoir activity, GO:0016197 - endosome transport, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0005768 - endosome, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0005737 - cytoplasm, GO:0051028 - mRNA transport, GO:0016482 - cytoplasmic transport, GO:0005886 - plasma membrane, GO:0015031 - protein transport	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000109 - endosperm storage protein-2 content, TO:0000490 - protein composition related trait	PO:0009010 - seed 
652	GRH1	Grh1	GREEN RICE LEAFHOPPER RESISTANCE 1	Green rice leafhopper resistance1, Green rice leafhopper resistance 1, Green rice leafhopper resistance-1			5	duplicate or complementary. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060432			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
653	IPL1	IPl1	INHIBITOR FOR PURPLE LEAF 1	Inhibitor for Purple leaf 1, Inhibitor for purple leaf-1			5	Inhibitor for Pl or Plw. Plw is inhibited by IPl1 together with IPl2 or IPl3 in duplicate or triplicate action. PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar ; PO:0009025; leaf ; PO:0020105; ligule ; PO:0020141; stem node. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Anthocyanin			GR:0060474			GO:0009812 - flavonoid metabolic process	TO:0000294 - auricle color, TO:0000426 - internode color, TO:0000059 - node color, TO:0000364 - leaf collar color, TO:0000197 - ligule color, TO:0000299 - leaf lamina color	PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0020141 - stem node , PO:0020142 - stem internode , PO:0009025 - vascular leaf , PO:0006012 - leaf collar 
654	MPOX1	M Pox1(M px1), MPx1, MPox1, Pox7	MODIFIER FOR PEROXIDASE POX 1	Modifier for peroxidase Pox1, Modifier for peroxidase (Pox1), Peroxidase-7	MODIFIER FOR PEROXIDASE POX 1	M Pox1-0, M Pox1-1	5	Modifier to peroxidase Pox1.	 Biochemical character			GR:0061118			GO:0016693 - secretory plant peroxidase activity, GO:0004601 - peroxidase activity		
655	MDH3	Mdh3*, Mdh3	MALATE DEHYDROGENASE(NAD) 3	Malate dehydrogenase(NAD)3, Malate dehydrogenase (NAD) 3, Malate dehydrogenase (NAD)-3	MALATE DEHYDROGENASE(NAD) 3		5	Dimer. P(ST-H). Variant is known only in wild taxa.	 Biochemical character			GR:0060522			GO:0016615 - malate dehydrogenase activity		
656	MS14	ms14	MALE STERILE 14	male sterile14, male sterile 14, male sterile-14			5	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060551			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
657	OC2	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2	ORYZACYSTATIN 2	Oryzacystatin2, Cysteine proteinase inhibitor 2, Oryzacystatin-2, Oryzacystatin II, Oryzacystatin-II, Oryzacystatin-III	ORYZACYSTATIN 2		5	P20907. J05595. X57658. AB125972, AB125973. OC-III in Ohtsubo et al. 2005. a member of phytocystatin.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os05g0494200	LOC_Os05g41460.1, LOC_Os05g41460.2	GR:0060579			GO:0006952 - defense response, GO:0009536 - plastid, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0030414 - peptidase inhibitor activity	TO:0000054 - animal damage resistance	
658	PI10	Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)	PYRICULARIA ORYZAE RESISTANCE 10	Pyricularia oryzae resistance 10, Magnaporthe grisea resistance 10, Blast resistance 10			5	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Map position (88.5-102.8 cM). Original line is Tongil (Indica).	 Tolerance and resistance - Disease resistance			GR:0060637			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000483 - germinability at low temperature	PO:0009025 - vascular leaf 
659	POX1	Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74	PEROXIDASE 1	Peroxidase1, Peroxidase 1 precursor, Peroxidase 1, Peroxidase-1, class III peroxidase 74	PEROXIDASE 1	Pox1-0, Pox1-1 (Pox1-2A), Pox1-2 (Pox1-0C)	5	Dimer. L(ST). Monomorphic in cultivars. Pox1-2 is specific to perennial type of O. rufipogon. EC=1.11.1.7 P37834. BN000603.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0499300	LOC_Os05g41990.1	GR:0060685			GO:0005509 - calcium ion binding, GO:0055114 - oxidation reduction, GO:0042744 - hydrogen peroxide catabolic process, GO:0020037 - heme binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005576 - extracellular region, GO:0004601 - peroxidase activity, GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
660	PRO2	Pro2*, Pro2	PROLAMIN 2	Prolamin2, Prolamin 2, Prolamin-2	PROLAMIN 2		5	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060693			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
661	PRO3	Pro3*, Pro3	PROLAMIN 3	Prolamin3, Prolamin 3, Prolamin-3	PROLAMIN 3		5	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060694			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
662	PRO5	Pro5*, Pro5	PROLAMIN 5	Prolamin5, Prolamin 5, Prolamin-5	PROLAMIN 5		5	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060696			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
663	RK3	Rk3	ROUND KERNEL 3	Round kernel3, Round kernel 3, Round kernel-3			5	This dominant mutant can be distiguished from the normal by its small and round kernels. [401] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060763		89.0		TO:0000149 - seed width, TO:0000391 - seed size, TO:0000287 - brown rice shape	PO:0009010 - seed 
664	SD7	sd7, sd7(t)	SEMIDWARF 7	semidwarf7 (D5631), semidwarf-7(D65-31), semidwarf-7, semidwarf 7			5	Reduction in length of the 2nd to 5th internodes from the top. [RGN6:6] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060848			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000145 - internode length	PO:0009047 - stem 
665	SDG	sdg*, sd11	SEMIDWARF(BRGPC)	semidwarf (BRGPC), semidwarf(BRGPC), semidwarf-11, SEMIDWARF			5	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060852			GO:0009826 - unidimensional cell growth	TO:0000207 - plant height, TO:0000576 - stem length	PO:0009047 - stem 
666	SHP3	Shp3(Ga), Ga, Shp3	SHEATHED PANICLE 3	Sheathed panicle3, Sheathed panicle 3, Sheathed panicle-3			5	complementary. PO:0020142; stem internode ; PO:0009049; inflorescence. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Inflorescence			GR:0060887			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000165 - panicle exsertion, TO:0000089 - panicle type, TO:0000145 - internode length	PO:0009049 - inflorescence , PO:0020142 - stem internode 
667	WGL	wgl(t)*, wgl	SPIKELET WIDTH	spikelet width		wgl-n(t)	5	This gene widens the width of spikelet.[157] PO:0009039; glume ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061000			GO:0007275 - multicellular organismal development	TO:0000149 - seed width	PO:0009039 - glume , PO:0009082 - spikelet floret 
668	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 5	Xanthomonas oryzae pv. oryzae resistance 5, Xanthomonas campestris pv. oryzae resistance-5, Xanthomonas oryzae pv. oryzae resistance-5, Transcription initiation factor IIA subunit 2, General transcription factor IIA subunit 2, Transcription initiation factor IIA gamma chain, TFIIA-gamma, gamma subunit of transcription factor IIA, basal transcription factor IIA gamma subunit  5	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	OsTFIIAgamma5V39E, OsTFIIAgamma5V39D, OsTFIIAgamma5V39A, OsTFIIAgamma5V39L, OsTFIIAgamma5V39Q, xa5, mXa5	5	Resistant to the all six Philippine isolates.This gene is located on chromosome 5 flanked by markers RS7 and RM611. A2XZI2(indica). Q0DLD3(japonica). PO:0009025; leaf. GRO:0007146; vegetative lag phase. AY643717, AF532975, AY643716. 	 Tolerance and resistance - Disease resistance,  Other	Os05g0107700	LOC_Os05g01710.1, LOC_Os05g01710.2, LOC_Os05g01710.3	GR:0061015			GO:0005634 - nucleus, GO:0006952 - defense response, GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0009751 - response to salicylic acid stimulus, GO:0005672 - transcription factor TFIIA complex, GO:0003743 - translation initiation factor activity, GO:0042742 - defense response to bacterium, GO:0045449 - regulation of transcription, GO:0006412 - translation, GO:0003702 - RNA polymerase II transcription factor activity	TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance	PO:0009025 - vascular leaf 
669	YLB	ylb, z14	YELLOW BANDED LEAF BLADE	yellow banded leaf blade, zebra-14			5	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0061043			GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000165 - panicle exsertion, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
670	Z7	z7	ZEBRA 7	zebra7, zebra 7, zebra-7			5	Seedlings show distinct yellow bands from emergence to 20days after seeding.The chlorotic bands appear again at early tillering but do not persist at later growth stage. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061053		163.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
671	_	OsPAL04, PAL04, PAL, OsPAL7, PAL7	PHENYLALANINE AMMONIA-LYASE	Phenylalanine ammonia lyase	PHENYLALANINE AMMONIA-LYASE		5	OsPAL7 in Tonnessen et al. 2014,  Zhou et al. 2018, Xu et al. 2018, Ke et al. 2019, Sathe et al. 2019, Wu et al. 2019, He et al. 2020, Sun et al. 2021, Wu et al. 2022, Wang et al. 2022, Liu et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os05g0427400	LOC_Os05g35290.1	GR:0061060			GO:0002213 - defense response to insect, GO:0005737 - cytoplasm, GO:0009620 - response to fungus, GO:0016841 - ammonia-lyase activity, GO:0002238 - response to molecule of fungal origin, GO:0009809 - lignin biosynthetic process, GO:0016211 - ammonia ligase activity, GO:0009609 - response to symbiotic bacterium, GO:0002215 - defense response to nematode, GO:0009058 - biosynthetic process, GO:0006559 - L-phenylalanine catabolic process, GO:0009408 - response to heat	TO:0000384 - nematode damage resistance, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000432 - temperature response trait	
672	NL2	nl2	NECK LEAF 2	neck leaf2, neck leaf 2, neck leaf-2			5	PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060574		6.0	GO:0030154 - cell differentiation	TO:0000089 - panicle type	PO:0009049 - inflorescence 
673	D1	d1, GPA1, GA1, OsGA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89, TGW5, OsTGW5, SRG5, OsSRG5	DAIKOKU DWARF	daikoku dwarf, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 7, dwarf-1, Guanine nucleotide-binding protein alpha-1 subunit, GP-alpha-1, Protein Dwarf1, G-protein alpha subunit, GP-alpha-1, G-protein alpha subunit 1, dwarf69, dwarf 69, GTP binding protein alpha-subunit, dwarf 89, rice G protein a subunit 1, G protein a subunit 1, heterotrimeric G protein alpha-subunit, Thousand-Grain-Weight 5, small and round grain 5	GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT	d1, d89, d1-5, rga1, d1-c, rga1-1, rga1-2, srg5	5	One third of normal height, having short thick leaves of dark green color. Internodes are thick and sometimes the second internode does not elongate. Grain is small and round. D38232. L35844. A2Y3B5(indica). Q0DJ33(japonica).L35844, AY792541-AY792546 (O. sativa and other wild rice species). AY299684, AY188586, AY188587, AY188596, AY188597 (wild rice species).  L28001. DQ223335-DQ223343, DQ223368-DQ223382, DQ223400, DQ223401, DQ223409-DQ223413, DQ911247 (wild rice species). HQ634688. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. TO:0001069: cooking quality trait. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Character as QTL - Grain quality,  Character as QTL - Germination,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os05g0333200	LOC_Os05g26890.1	GR:0060184		30.0	GO:0007275 - multicellular organismal development, GO:0005834 - heterotrimeric G-protein complex, GO:0009651 - response to salt stress, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0009408 - response to heat, GO:0010038 - response to metal ion, GO:0009725 - response to hormone stimulus, GO:0009687 - abscisic acid metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0010029 - regulation of seed germination, GO:0003924 - GTPase activity, GO:0006471 - protein amino acid ADP-ribosylation, GO:0009409 - response to cold, GO:0004871 - signal transducer activity, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0005525 - GTP binding, GO:0009755 - hormone-mediated signaling, GO:0009740 - gibberellic acid mediated signaling	TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000397 - grain size, TO:0000132 - basal internode diameter, TO:0000303 - cold tolerance, TO:0000484 - seed shape, TO:0000299 - leaf lamina color, TO:0000576 - stem length, TO:0000158 - red light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000162 - seed quality, TO:0000259 - heat tolerance, TO:0000382 - 1000-seed weight, TO:0000145 - internode length, TO:0000346 - tiller number, TO:0006001 - salt tolerance, TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0000455 - seed set percent, TO:0000592 - 1000-dehulled grain weight, TO:0000391 - seed size, TO:0000040 - panicle length, TO:0000326 - leaf color, TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance, TO:0000557 - secondary branch number, TO:0000449 - grain yield per plant, TO:0000266 - chalky endosperm, TO:0000462 - gelatinization temperature, TO:0000408 - hot paste viscosity, TO:0000080 - micronutrient sensitivity, TO:0002667 - abscisic acid content, TO:0000089 - panicle type, TO:0000492 - leaf shape, TO:0002730 - grain shape, TO:0000135 - leaf length	PO:0009047 - stem , PO:0020039 - leaf lamina , PO:0020142 - stem internode , PO:0009025 - vascular leaf , PO:0000003 - whole plant , PO:0009049 - inflorescence , PO:0009010 - seed 
674	ST2	st2(gw), gw, st2	STRIPE 2	stripe2, stripe 2, stripe-2			5	White streakes appear not only in leaf blade but also in leaf sheath, stem and even in spikelet through the whole green stage. [298] PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Coloration - Chlorophyll			GR:0060929		49.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000190 - seed coat color, TO:0000056 - stem color, TO:0000495 - chlorophyll content	PO:0009047 - stem , PO:0009088 - seed coat , PO:0009025 - vascular leaf , PO:0020104 - leaf sheath 
675	AL3	al3, alK3	ALBINO 3	albino3, albino 3, albino-3			5	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060022		51.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
676	SPL8	spl8(bl8), spl8, bl8	SPOTTED LEAF 8	spotted leaf8, spotted leaf-8			5	Fine striped spots of reddish brown appear on whole surface of leaves after tillering stage. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060909		51.0	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
677	AL6	al6(t), al6, alK6	ALBINO 6	albino6, albino 6, albino-6			5	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060025		56.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
678	FLO1	flo1, flo1-1, o	FLOURY ENDOSPERM 1	floury endosperm1, floury endosperm 1, opaque, floury endosperm-1			5	Endosperm is floury white. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060330		63.0	GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000104 - floury endosperm, TO:0000266 - chalky endosperm	PO:0009089 - endosperm 
679	OPS	ops	OPEN HULL STERILE	open hull sterile			5	Due to an abnormal shape of palea and lemma, they are open before anthesis. After anthesis, there are many spikelets  incompletely closed causing sterility. PO:0009038; palea ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Other sterilities			GR:0060585		69.0	GO:0007275 - multicellular organismal development	TO:0000180 - spikelet fertility, TO:0000437 - male sterility, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000474 - glume opening	PO:0009082 - spikelet floret , PO:0009038 - palea , PO:0009037 - lemma 
680	V10	v10	VIRESCENT 10	virescent10, virescent 10, virescent-10			5	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060989		77.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
681	BGL	bgl, OsRopGEF10, Os RopGEF10, RopGEF10, OsGEF21, GEF21, SPD25, OsSPD25	BRIGHT GREEN LEAF	bright green leaf, guanine nucleotide exchange factor for Rop 10, GEF for ROP 10, Rop-specific GEF10, Rop-specific guanine nucleotide exchange factor 10, Guanine nucleotide exchange factor  21, small papilla deficient 25	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 10	spd25, gef10-W260S	5	RhoGEF family. PRONE domain containing protein. GRO:0007047; 02-seedling. TO:0001048: silicon content trait. GO:1902184: negative regulation of shoot apical meristem development.	 Reproductive organ - panicle,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Shoot apical meristem(SAM),  Coloration - Chlorophyll	Os05g0454200	LOC_Os05g38000.1, LOC_Os05g38000.2	GR:0060078		82.0	GO:0015994 - chlorophyll metabolic process, GO:0009735 - response to cytokinin stimulus, GO:0048367 - shoot development, GO:0010109 - regulation of photosynthesis, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0010229 - inflorescence development, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0009658 - chloroplast organization, GO:0005886 - plasma membrane, GO:0030104 - water homeostasis, GO:0010119 - regulation of stomatal movement, GO:0080037 - negative regulation of cytokinin mediated signaling	TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0002658 - starch grain synthesis, TO:0000547 - primary branch number, TO:0000167 - cytokinin sensitivity, TO:0000447 - filled grain number, TO:0000397 - grain size, TO:0000207 - plant height, TO:0002759 - grain number, TO:0006020 - shoot apical meristem development, TO:0000621 - inflorescence development trait, TO:0000449 - grain yield per plant, TO:0000654 - shoot development trait, TO:0000734 - grain length, TO:0000456 - spikelet number, TO:0000299 - leaf lamina color, TO:0006032 - panicle size, TO:0001017 - water use efficiency, TO:0000136 - relative water content, TO:0001015 - photosynthetic rate, TO:0000522 - stomatal conductance, TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability, TO:0001018 - transpiration rate, TO:0000709 - leaf gloss, TO:0000504 - leaf temperature, TO:0000696 - starch content, TO:0000455 - seed set percent	PO:0009006 - shoot system , PO:0020148 - shoot apical meristem , PO:0000230 - inflorescence meristem , PO:0009009 - plant embryo , PO:0025477 - floral organ primordium , PO:0001083 - inflorescence development stage , PO:0025395 - floral organ , PO:0009039 - glume , PO:0009025 - vascular leaf , PO:0009030 - carpel , PO:0009051 - spikelet , PO:0025527 - shoot system development stage 
682	RI	ri	VERTICILLATE RACHIS	verticillate rachis			5	PO:0006321; second order inflorescence branch ; PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060756		85.0	GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000052 - primary branching of inflorescence	PO:0009049 - inflorescence , PO:0006321 - primary inflorescence branch 
683	SPL7	spl7, HSFA4D, HSF10, HSF15, OsHSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1	SPOTTED LEAF 7	spotted leaf7, spotted leaf-7, Heat stress transcription factor Spl7, Heat stress transcription factor A-4d, Heat stress transcription factor 15, Heat stress transcription factor 10, Protein SPOTTED LEAF 7, HEAT STRESS TRANSCRIPTION FACTOR A4d, spontaneous lesion 7	HEAT STRESS TRANSCRIPTION FACTOR A-4D	spl7, osspl7, spl7ko-1, spl7ko-2	5	Relatively small reddish brown spots scattering over the whole surface of leaves.  They appear from tillering stage to heading time. The phenotypes of spl3, spl5 and spl7 are similar, being difficult to distinguish each other. [137] Q93VB5. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage. AC111015. KC610831-KC610843 (O. sativa and wild rice species, partial cds). AY885947-AY885975 and DQ374857-DQ374884  (O. sativa and other wild rice species, partial cds). OsHSF15 in Muthuramalingam et al. 2019. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance	Os05g0530400	LOC_Os05g45410.1	GR:0060908		100.0	GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0009628 - response to abiotic stimulus, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009814 - defense response, incompatible interaction, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding	TO:0000259 - heat tolerance, TO:0000069 - variegated leaf, TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait, TO:0000605 - hydrogen peroxide content, TO:0000112 - disease resistance, TO:0000063 - mimic response	PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0009072 - plant ovary , PO:0009025 - vascular leaf , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009005 - root , PO:0025034 - leaf 
684	NL1	nl1, OsGATA15, GATA15, OsNL1	NECK LEAF 1	neck leaf1, neck leaf 1, neck leaf-1, NECK LEAF1, GATA transcription factor 15, GATA factor 15	GATA TYPE TRANSCRIPTION FACTOR	nl1-1, nl1-2, nl1-3, nl1, nl1-5, nl1-6	5	A neck leaf is an extra leaf grown from the basal node of panicle. Usually most part of panicle is not covered by this neck leaf, but the panicle of NL1 mutant is covered by the neck leaf. If this is longer than a panicle, the spikelet does not appear from the leaf sheath when matured. PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. DQ784546. C2C2-GATA (GATA C2C2 zinc finger transcription factor). a paralog of Arabidopsis HAN.	 Reproductive organ - panicle,  Reproductive organ - Inflorescence	Os05g0578900	LOC_Os05g50270.1	GR:0060573		110.0	GO:0030154 - cell differentiation, GO:0010229 - inflorescence development, GO:0010228 - vegetative to reproductive phase transition, GO:0010432 - bract development	TO:0000089 - panicle type, TO:0000621 - inflorescence development trait, TO:0000557 - secondary branch number, TO:0000050 - inflorescence branching, TO:0000547 - primary branch number, TO:0000456 - spikelet number	PO:0009055 - bract , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0025487 - bract primordium 
685	AL2	al2, alK2	ALBINO 2	albino2, albino 2, albino-2			5	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060021		111.0	GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
686	AL1	al1(alK1), alK1, al1	ALBINO 1	albino1, albino 1, albino-1			6	Chlorophyl is not developed from germination. Albino plant dies at seedling. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060020			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
687	AL9	al9(t), al9	ALBINO 9	albino9, albino 9, albino-9			6	PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060028			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
688	AMP5	Amp5	AMINOPEPTIDASE 5	Aminopeptidase5, Aminopeptidase 5, Aminopeptidase-5	AMINOPEPTIDASE 5	Amp5-0, Amp5-1, Amp5-2, Amp5-3, Amp5-4, Amp5-5, Amp5-10	6	Monomers. S(PAGE-ST). The band migrates faster than taht of Amp1. Active in seed and stained by Leu-NAm substrate. Differential allele frequencies between India & Japonica types.	 Biochemical character			GR:0060040			GO:0004177 - aminopeptidase activity		
689	AMY2A	Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A	ALPHA-AMYLASE 2A	Alpha-amylase2A, Alpha-amylase isozyme 2A, Alpha-amylase isozyme C2, Alpha-amylase-2A, Amylase-4	ALPHA-AMYLASE 2A		6	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. Q0D9J1(japonica), A2YGY2(indica). BGIOSGA023598 (indica). TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os06g0713800	LOC_Os06g49970.2	GR:0060045			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding, GO:0032940 - secretion by cell, GO:0080006 - internode patterning, GO:0005975 - carbohydrate metabolic process, GO:0005987 - sucrose catabolic process, GO:0005983 - starch catabolic process, GO:0004556 - alpha-amylase activity, GO:0009739 - response to gibberellin stimulus	TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000544 - mesocotyl length	
690	APH	aph	APICULUS HAIRS	apiculus hairs			6	PO:0006033; paleal apiculus ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060059			GO:0007275 - multicellular organismal development	 - palea pubescence, TO:0000417 - lemma and palea pubescence	PO:0006033 - paleal apiculus , PO:0009088 - seed coat 
691	BC4	bc4, bc-4	BRITTLE CULM 4	brittle culm4, brittle culm 4, brittle culm-4			6	This mutant has a brittle culm and leaves that break very easily.  The mutant trait is expressed at all growth stages. PO:0009047; stem ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060071		9.0	GO:0009808 - lignin metabolic process, GO:0031225 - anchored to membrane, GO:0005886 - plasma membrane, GO:0009531 - secondary cell wall, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009834 - secondary cell wall biogenesis	TO:0000108 - leaf shattering, TO:0000061 - node shattering, TO:0000051 - stem strength	PO:0009025 - vascular leaf , PO:0009047 - stem 
692	CAT1	Cat1, Cat_1	CATALASE 1	Catalase1, Catalase 1, Catalase-1	CATALASE 1	Cat1-1, Cat1-2, Cat1-3, Cat1-0	6	Tetramer. S,P&C(PAGE-TC), P & PO(ST-H). Differential allele frequencies. between Indica and Japonica types. Thermomorphs are known.	 Biochemical character			GR:0060110			GO:0004096 - catalase activity		
693	CHL7	chl7	CHLORINA 7	chlorina7, chlorina 7, chlorina-7			6	This chlorophyll mutant has distinct yellowish leaves and is early maturing.  The character is expressed from seedling to maturity. [228] PO:0009010; seed ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060124			GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000496 - carotenoid content, TO:0000469 - days to maturity, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009010 - seed , PO:0009025 - vascular leaf 
694	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1, PR3, OsPR3	CHITINASE 1	Chitinase1, Chitinase 1, Pathogenesis related (PR)-3 chitinase 1, Class I chitinase a, Chitinase-1(class I)	CHITINASE 1		6	"EC=3.2.1.14 PR-3 chitinase, pathogenesis related 3 chitinase, POLY-BETA-GLUCOSAMINIDASE, CHITODEXTRINASE, \"1,4-BETA- POLY-N-ACETYLGLUCOSAMINIDASE\". Q42993. D16221. X87109. Z29961. D10423 (partial cds). X56063."	 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0726200	LOC_Os06g51060.1	GR:0060133			GO:0009723 - response to ethylene stimulus, GO:0016998 - cell wall macromolecule catabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008843 - endochitinase activity, GO:0008061 - chitin binding, GO:0050832 - defense response to fungus, GO:0051707 - response to other organism, GO:0009753 - response to jasmonic acid stimulus, GO:0004568 - chitinase activity, GO:0006032 - chitin catabolic process, GO:0009863 - salicylic acid mediated signaling pathway, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus	TO:0000173 - ethylene sensitivity, TO:0000439 - fungal disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000315 - bacterial disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000255 - sheath blight disease resistance	
695	CHT3	Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11, OsPR3, PR3	CHITINASE 3	Chitinase3, Basic endochitinase 1 precursor, Basic endochitinase 1, Chitinase 3, Pathogenesis related (PR)-3 chitinase 3, Class I chitinase c, Chitinase-3(class I), CHITINASE7	CHITINASE 3		6	EC=3.2.1.14 PR-3 chitinase. pathogenesis related 3 chitinase. P24626. Z29962. X54367. CHI7 in Khong et al. 2015. OsCHI11 in Karmakar et al. 2016 and 2017, Cao et al. 2022. HC733649.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0726100	LOC_Os06g51050.1	GR:0060135			GO:0008061 - chitin binding, GO:0006040 - amino sugar metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0051707 - response to other organism, GO:0016231 - beta-N-acetylglucosaminidase activity, GO:0006032 - chitin catabolic process, GO:0016998 - cell wall macromolecule catabolic process, GO:0050832 - defense response to fungus, GO:0008843 - endochitinase activity, GO:0004568 - chitinase activity	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	
696	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf	CROSS-INCOMPATIBILITY IN THE FEMALE REACTION 1	Cross-incompatibility in the female reaction		41.0	6	Low crossabiity when this gene exists in a female parent.  Reciprocal cross shows normal seed setting. Genetic symbol Lcr was changed to Cinf in Kobayashi & Sano, 1996. PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060139			GO:0009566 - fertilization, GO:0009856 - pollination	TO:0000035 - incompatibility trait	PO:0009082 - spikelet floret 
697	D21	d21, dwf18	DWARF AOMORIMOCHI-14	aomorimochi-14 dwarf, dwarf-21			6	short culm and panicles  with narrow leaves. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060201			GO:0007275 - multicellular organismal development	TO:0000370 - leaf width, TO:0000576 - stem length, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000484 - seed shape	PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
698	DRP6	drp6	DRIPPING-WET LEAF 6	dripping-wet leaf6, dripping-wet leaf 6, dripping-wet leaf-6			6	Leaf surface appears wet. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060246			GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
699	DU2035	du2035*, du9, du2035	DULL ENDOSPERM 2035	dull endosperm(2035), dull endoaperm (2035), dull endosperm-9			6	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060269			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
700	DUEM47	duEM47*, du11, duEM47	DULL ENDOAPERM EM 47	dull endoaperm(EM47), dull endoaperm (EM47), dull endosperm-11			6	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060271			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
701	DW1	dw1(fh1), fh1, dw1	DEEP WATER TOLERANCE 1	deep water tolerance1, deep water tolerance 1, deep water tolerance-1			6	duplicate. PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm			GR:0060272			GO:0009413 - response to flooding	TO:0000103 - deepwater stress, TO:0000170 - elongation ability	PO:0000003 - whole plant 
702	EFY	Efy(t)*, Ef6(t)*, Efy	EARLINESS Y	Earliness-y			6	complementary  with Efx  (Sato et al. 1992) PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060283			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity, TO:0000137 - days to heading	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
703	ENP1	Enp1*, Enp1	ENDOPEPTIDASE 1	Endopeptidase1, Endopeptidase 1, Endopeptidase-1	ENDOPEPTIDASE 1	Enp1-0, Enp1-1	6	Monomer. P(ST). A null allele was identified.	 Biochemical character			GR:0060296			GO:0004175 - endopeptidase activity		
704	FC2	fc2	FINE CULM 2	fine culm2, fine culm 2, fine culm-2			6	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060323			GO:0007275 - multicellular organismal development	TO:0000339 - stem thickness, TO:0000346 - tiller number	PO:0009047 - stem 
705	GA4	ga4(gaA), gaA, ga4	GAMETOPHYTE GENE 4	gametophyte gene4, gametophyte gene 4, gametophyte gene-4			6		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060346			GO:0019953 - sexual reproduction		
706	GA5	ga5(gaB), gaB, ga5	GAMETOPHYTE GENE 5	gametophyte gene5, gametophyte gene 5, gametophyte gene-5			6		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060347			GO:0019953 - sexual reproduction		
707	GLUP6	glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF	GLUTELIN PRECURSOR 6	glutelin precursor6, glutelin precursor 6, Glutelin precursor-6, GLUTELIN PRECURSOR ACCUMULATION2, glutelin precursor accumulation 2, Vacuolar sorting protein9 domain-containing protein, Rab5-GEF, glutelin precursor mutant6, Rab5a-guanine exchange factor	GLUTELIN PRECURSOR 6	gpa2, glup6/gef, glup6, vps9a	3	glup6 gene is located on chromosome 3 within 10.4cM region between PCR markers, R10784 and R216. PO:0009010; seed.  ABF95105.	 Seed - Physiological traits - Storage substances	Os03g0262900	LOC_Os03g15650.1, LOC_Os03g15650.2, LOC_Os03g15650.3	GR:0060416			GO:0016020 - membrane, GO:0000919 - cell plate formation, GO:0048528 - post-embryonic root development, GO:0016482 - cytoplasmic transport, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009790 - embryonic development, GO:0042546 - cell wall biogenesis, GO:0015031 - protein transport, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
708	GOT2	Got2, Aat2	ASPARTATE AMINOTRANSFERASE 2	Aspartate aminotranspherase2, Aspartate aminotranspherase 2, Aspartate aminotransferase-2	ASPARTATE AMINOTRANSFERASE 2	Got2-1, Got2-2	6	Dimer. P(ST-C, PAGE).	 Biochemical character			GR:0060428			GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
711	IPL2	IPl2	INHIBITOR FOR PURPLE LEAF 2	Inhibitor for purple leaf2, Inhibitor for purple leaf 2, Inhibitor for purple leaf-2			6	Anthocyanin pigmentation on leaf blade and sheath is inhibited by IPl2 in duplicate or triplicate action with IPl1 or IPl3. PO:0020106; auricle ; PO:0020142; stem internode ; PO:0006012; leaf collar ; PO:0009025; leaf ; PO:0020105; ligule ; PO:0020104; leaf sheath ; PO:0020141; stem node. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. 	 Coloration - Anthocyanin			GR:0060475			GO:0009812 - flavonoid metabolic process	TO:0000059 - node color, TO:0000299 - leaf lamina color, TO:0000367 - basal leaf sheath color, TO:0000294 - auricle color, TO:0000364 - leaf collar color, TO:0000197 - ligule color, TO:0000426 - internode color	PO:0020104 - leaf sheath , PO:0006012 - leaf collar , PO:0020105 - ligule , PO:0020106 - leaf sheath auricle , PO:0020142 - stem internode , PO:0020141 - stem node , PO:0009025 - vascular leaf 
712	LDH*	Ldh*, Ldh1	LACTATE DEHYDROGENASE 1	Lactate dehydrogenase, Lactate dehydrogenase-1	LACTATE DEHYDROGENASE 1	Ldh1-1, Ldh1-2, Ldh1-3, Ldh1-0	6		 Biochemical character			GR:0060494			GO:0004457 - lactate dehydrogenase activity		
713	MP2	mp2	MULTIPLE PISTIL 2	multiple pistil2, multiple pistil 2, multiple pistil-2			6	florets of this mutant have two or more functional pistils, and two kernels are enclosed within one lemma and palea. [228] PO:0006384; gynoecium (sensu Poaceae) ; PO:0006455; carpel (sensu Poaceae) ; PO:0006441; stamen (sensu Poaceae). GRO:0007044; 06-heading stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060532			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009062 - gynoecium , PO:0009029 - stamen , PO:0009030 - carpel 
714	PI13	Pi13(t), Pi13(t)*, Pi13	PYRICULARIA ORYZAE RESISTANCE 13	Pyricularia oryzae resistance 13, Magnaporthe grisea resistance 13 (Maowangu), Blast resistance 13			6	One of the two resistant genes found in Maowangu.  Another one is Pi14(t). Resistant  to several races of Pyricularia grisea. [RGN13:17]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060641			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000486 - seed color	PO:0009025 - vascular leaf 
716	PI8	Pi8, Pi-8	PYRICULARIA ORYZAE RESISTANCE 8	Pyricularia oryzae resistance 8, Magnaporthe grisea resistance-8, Blast resistance 8			6	(Pan et al. 1996 Phytopathol. 86). One of the two resistant genes found in Kasalath. Another one is Pi z-t. Resistant  to several races of Pyricularia grisea. [RGN13:16]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060635		98.0	GO:0009620 - response to fungus	TO:0000505 - leaf weight, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
717	PI9	Pi9(t), Pi9(t)*, Pi9, Pi-9(t)	PYRICULARIA ORYZAE RESISTANCE 9	Pyricularia oryzae resistance 9, Magnaporthe grisea resistance-9, Blast resistance 9	NUCLEOTIDE-BINDING SITE LEUCINE-RICH REPEAT PROTEIN		6	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. DQ285630, Original line is O. minuta 75-1-127.	 Tolerance and resistance - Disease resistance	Os06g0146100	LOC_Os06g05359.1	GR:0060636		58.7	GO:0002238 - response to molecule of fungal origin, GO:0009620 - response to fungus, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0016046 - detection of fungus, GO:0050832 - defense response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000074 - blast disease, TO:0000506 - nitrogen recycling	PO:0009025 - vascular leaf 
718	POX5	Pox5	PEROXIDASE 5	Peroxidase5, Peroxidase 5, Peroxidase-5	PEROXIDASE 5	Pox5-1, Pox5-2	6	Monomer. L(ST-HCL), P(ST-C). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060689			GO:0004601 - peroxidase activity		
719	PS	PS*	PHOTOPERIOD SENSITIVITY	Photoperiod sensitivity			6	PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060702			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009011 - plant structure , PO:0009049 - inflorescence , PO:0000003 - whole plant 
720	RCN5	rcn5	REDUCED CULM NUMBER 5	reduced culm number-5			6	Few tillers under low temperature conditions. [RGN11:10] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060730			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000346 - tiller number, TO:0000432 - temperature response trait	PO:0009047 - stem 
721	SA1	S A1(A1), A1, S A1	HYBRID STERILITY A 1	Hybrid sterility-A, Sporophytic F2 sterility A			6	duplicate. sporophytic F2 sterility. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060786			GO:0007275 - multicellular organismal development	TO:0000046 - f2-generation sterility, TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0009046 - flower 
722	S A1(S1,X1)	s a1(s1,x1), s1, s a1, x1	HYBRID STERILITY A 1	hybrid sterility-a-1			6	duplicate. gametophytic F1 sterility. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060798			GO:0000049 - tRNA binding, GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
723	SB2	S B2(B2), S B2, B2	HYBRID STERILITY B 2	Hybrid sterility-B-2, Sporophytic F2 sterility B			6	PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060790			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000046 - f2-generation sterility, TO:0000358 - female sterility	PO:0009046 - flower 
724	SC1	s c1	HYBRID STERILITY C 1	hybrid sterility-c, hybrid sterility-c1			6	gametophytic F1 sterility.  duplicate gene. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060800			GO:0007275 - multicellular organismal development, GO:0000049 - tRNA binding	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
725	S D1	s d1	HYBRID STERILITY-D-1	hybrid sterility-d-1, hybrid sterility-d1			6	gametophytic F1 sterility. duplicate. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060802			GO:0007275 - multicellular organismal development, GO:0000049 - tRNA binding	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
726	S1		HYBRID STERILITY 1	Hybrid sterility1, Hybrid sterility 1, Hybrid sterility-1		S1-a, S1g, S1s, S1-g, S1-s, S1-glab, S1-DJY1, S1-gm, S1-s	6	Sporogametophytic interaction. S1-g: O. glaberrima (African rice) S1 allele, S1-s: Oryza sativa (Asian rice) S1 allele. Three closely linked genes (S1A4, S1TPR, and S1A6) in the African S1 allele (S1-g) constitute a killer- protector system that eliminates gametes carrying the Asian allele (S1-s). The S1-s allele in O. sativa harbors only the defective S1TP gene (an S1TPR allele which is a truncated form of S1TPR) and lacks the functional gamete killer and protector (S1A4 or S1A6 alleles). (Xie et al., 2019) gamete eliminator. S1 gene initiates gametophytic pollen abortion before the middle 1N stage (Kanaoka et al. 2018).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060808			GO:0007275 - multicellular organismal development	TO:0000436 - spikelet sterility, TO:0000421 - pollen fertility, TO:0000218 - pollen abortion type, TO:0000416 - embryosac abortion, TO:0000060 - aborted uni-nucleate stage, TO:0000437 - male sterility, TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
727	S10		HYBRID STERILITY 10	Hybrid sterility10, Hybrid sterility 10, Hybrid sterility-10		S10-a, S10-i, S10-j, S10-n	6	Gamete eliminator.  Gametic elimination due to an allelic interaction such as S10/S10-a. A sterility locus, S10, was closely linked to waxy (Sano 1994), and was located on chromosome 6 between the SSR markers OSR19 and RM204 (Heuer et al. 2003).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060817			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000416 - embryosac abortion, TO:0000436 - spikelet sterility	PO:0009046 - flower 
728	S8		HYBRID STERILITY 8	Hybrid sterility8, Hybrid sterility 8, Hybrid sterility-8		S8-n, S8-i, S8-kn, S8-yp	6	Semi-sterility is expressed as an allelic interactin such as S8-yp/S8-kn. [RGN10:9] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060815			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
729	SAL2	sal2*, sal3	SALT PROTEIN	salT protein, salt protein, salt tolerance-3	SALT PROTEIN		6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character,  Tolerance and resistance - Stress tolerance			GR:0060834			GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
730	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1, OsSBE1, OsSBEI, SBEI	STARCH BRANCHING ENZYME 1	"starch branching enzyme1 (Q enzyme1), starch branching enzyme1, Q enzyme1, starch branching enzyme 1, Q-enzyme 1, \"1, 4-alpha-glucan branching enzyme, chloroplast precursor\", \"1, 4-alpha-glucan branching enzyme, chloroplast\", \"1, 4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic\", Q-enzyme 1, starch branching enzyme 1, starch branching enzyme-1, branching enzyme-I, Q-Enzyme I, starch Branching enzyme isoform Type A, Branching enzyme isoform Type A, BE isoform type A, branching enzyme 1"	STARCH BRANCHING ENZYME 1	be1	6	EC=2.4.1.18 Q01401. D11082, AF136268, D10838, D10752, AY302112, E07175. HQ712133, HQ712132, HQ712131, HQ712130, HQ712129, HQ712128, HQ712127, HQ712126. AY427568 (promoter). AY886060-AY886090 and DQ374885-DQ374912  (O. sativa and other wild rice species, partial cds).  GRO:0007045; 09-mature grain stage. 	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os06g0726400	LOC_Os06g51084.3, LOC_Os06g51084.1, LOC_Os06g51084.2, LOC_Os06g51084.8, LOC_Os06g51084.7, LOC_Os06g51084.6, LOC_Os06g51084.5, LOC_Os06g51084.4	GR:0060838			GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005976 - polysaccharide metabolic process, GO:0051707 - response to other organism, GO:0043169 - cation binding, GO:0009413 - response to flooding, GO:0009408 - response to heat, GO:0019252 - starch biosynthetic process, GO:0009501 - amyloplast, GO:0009568 - amyloplast starch grain, GO:0005982 - starch metabolic process, GO:0003844 - 1,4-alpha-glucan branching enzyme activity, GO:0009536 - plastid, GO:0009507 - chloroplast	TO:0000196 - amylose content, TO:0000097 - amylopectin content, TO:0000259 - heat tolerance, TO:0000489 - carbohydrate composition related trait, TO:0000333 - sugar content, TO:0000286 - submergence sensitivity, TO:0000590 - grain weight	PO:0005417 - phloem , PO:0020104 - leaf sheath , PO:0009010 - seed , PO:0025034 - leaf , PO:0020142 - stem internode , PO:0005020 - vascular bundle , PO:0009047 - stem , PO:0009089 - endosperm 
731	SE3	Se3(t), Se3	PHOTOSENSITIVITY 3	Photosensitivity3, Photosensitivity 3, Photoperiod-sensitivity-3			6	PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060862			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000469 - days to maturity, TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009013 - portion of meristem tissue , PO:0009010 - seed , PO:0009082 - spikelet floret , PO:0009049 - inflorescence 
732	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1	PHOTOSENSITIVITY 5	Photosensitivity5, Photosensitivity 5, Photoperiod-sensitivity-5, heme oxygenase 1, heme oxygenase-1, haem oxygenase-1, photoperiod sensitivity5, PHOTOPERIOD SENSITIVITY 5, YELLOW-GREEN LEAF2, YELLOW GREEN LEAF 2	HEME OXYGENASE 1 	se5, ygl2	6	LOC_Os06g40080. Q69XJ4. EU781632. C28969. ACE98543. Earliness due to the loss of photoperiod sensitivity.  Earlier by 46 days than the original cultivar Norin 8 under natural long-day. [RGN10:9] GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. a rice homologue of Arabidopsis HY1. 	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Biochemical character	Os06g0603000	LOC_Os06g40080.1	GR:0060864			GO:0006979 - response to oxidative stress, GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism, GO:0010075 - regulation of meristem growth, GO:0015979 - photosynthesis, GO:0020037 - heme binding, GO:0048573 - photoperiodism, flowering, GO:0009507 - chloroplast, GO:0009585 - red, far-red light phototransduction, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0010229 - inflorescence development, GO:0009658 - chloroplast organization, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0006788 - heme oxidation, GO:0009409 - response to cold, GO:0010024 - phytochromobilin biosynthetic process, GO:0004392 - heme oxygenase (decyclizing) activity, GO:0060359 - response to ammonium ion, GO:0009536 - plastid	TO:0000303 - cold tolerance, TO:0000469 - days to maturity, TO:0000496 - carotenoid content, TO:0000207 - plant height, TO:0000432 - temperature response trait, TO:0000298 - chlorophyll ratio, TO:0000229 - photoperiod sensitivity, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000137 - days to heading, TO:0000429 - salt sensitivity, TO:0002616 - flowering time, TO:0000326 - leaf color	PO:0009082 - spikelet floret , PO:0020033 - coleoptile , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence , PO:0020148 - shoot apical meristem , PO:0020103 - flag leaf , PO:0025034 - leaf 
734	SPL4	spl4(bl5), spl4, bl5	SPOTTED LEAF 4	spotted leaf4, spotted leaf 4, spotted leaf-4			6	Relatively large reddish brown spots scattering on leaves, but not so much spots as spl3, spl5 and spl7. [137] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage.	 Tolerance and resistance - Lesion mimic			GR:0060905			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
735	STVA	Stva(St1), St1, Stva, Stv1	STRIPE DISEASE RESISTANCE A	Stripe disease resistance, Stripe disease resistance-a, Stripe disease resistance-1, STRIPE DISEASE RESISTANCE			6	complementary. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Disease resistance			GR:0060938			GO:0009615 - response to virus	TO:0000148 - viral disease resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
736	TMS3	tms3(t)*, ms82	THERMOSENSITIVE MALE STERILITY 3	thermosensitive male sterility3, thermosensitive male sterility 3, thermosensitive male sterility-3, male sterile-82			6	PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060957			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000067 - genic male sterility-thermo sensitive, TO:0000437 - male sterility	PO:0009046 - flower , PO:0009066 - anther 
737	UNA	Una, Un1	UNEVEN GRAIN A	Uneven grain, Uneven grain-a, Uneven grain-1, UNEVEN GRAIN			6	complementary with Unb. The tip of the palea side of the kernel out-grows the tip of the lemma side. uneven kernel. PO:0009038; palea ; PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060976			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape	PO:0009038 - palea , PO:0009010 - seed 
738	WC	Wc*(S5-n,S-n), Wc1	WIDE COMPATIBILITY	Wide compatibility, Wide compatibility-1			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060998			GO:0009566 - fertilization, GO:0009856 - pollination	TO:0000035 - incompatibility trait	
739	XA7	Xa7	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 7	Xanthomonas oryzae pv. oryzae resistance 7, Xanthomonas campestris pv. oryzae resistance-7, Xanthomonas oryzae pv. oryzae resistance-7			6	This gene conveys resistance to race 1 at booting stage.	 Tolerance and resistance - Disease resistance			GR:0061016			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
740	Z13	z13	ZEBRA 13	zebra13, zebra 13, zebra-13			6	This mutant shows irregularly shaped horizontal white bands on the leaves throughout the growth duration. Because of this coalition of white bands, leaves of mature seedling leaves appear dry. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061059			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
741	ZN	zn	ZEBRA NECROSIS	zebra necrosis			6	Necrotic zebra bands of yellow or reddish color appear on the leaf blade with spacing of 3 to 4 mm in distance. [184] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0061064			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000063 - mimic response, TO:0000070 - variegated leaf necrosis	PO:0009025 - vascular leaf 
742	D4	d4, dwf4	DWARF BUNKETSUWAITO TILLERING	bunketsuwaito tillering dwarf, dwarf-4			6	Dwarf. Profuse tillering with slender leaves. [10003] PO:0009047; stem ; PO:0006343; axillary shoot ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060187			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000370 - leaf width, TO:0000207 - plant height, TO:0000346 - tiller number	PO:0006343 - axillary shoot system , PO:0009047 - stem , PO:0009025 - vascular leaf 
743	IPL4	IPl4	INHIBITOR FOR PURPLE PERICARP 4	Inhibitor for purple pericarp-4			6	Anthocyanin pigmentation on caryopsis by Plw is inhibited by IPl4 in duplicate action with IPl5. Inhibitor for purple pericarp. PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage..	 Coloration - Anthocyanin			GR:0060477		9.0	GO:0009812 - flavonoid metabolic process	TO:0000487 - endosperm color, TO:0000299 - leaf lamina color, TO:0000190 - seed coat color	PO:0009088 - seed coat , PO:0009025 - vascular leaf 
744	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS, OsWx	GLUTINOUS ENDOSPERM	"glutinous endosperm, waxy, Waxy, WAXY, \"Granule-bound starch synthase 1, chloroplastic/amyloplastic\", Granule-bound starch synthase I, UDP-glycogen synthase, \"Granule-bound starch synthase, chloroplast precursor\", glycogen [starch] synthase, Granule-bound glycogen synthase, UDPG-glycogen transglucosylase, uridine diphosphoglucose-glycogen glucosyltransferase, glycogen [starch] synthetase, Granule-bound glycogen [starch] synthase, UDPG-glycogen synthetase, granule bound starch synthase I, granule-bound starch synthase 1, granule-bound starch synthase I"	GRANULE-BOUND STARCH SYNTHASE I	wx-op, Wx-in, Wx-a(Wx), Wx-b(wx), Wx-mq, Wx-hp, Wx1-1(Wx-oz: Hokkai287), Wx-I, Wx-II, Wx-III, Wxa, Web, GBSSIL, Wx-g3, Wx-lv, Wx-in, Wx-la/Wx-mw, Wx-mp, Wx-op/Wx-hp	6	White and non-translucent endosperm. Brown to the iodine staining. EC=2.4.1.242 X58228. A2Y8X2(indica). P0C585. Q0DEV5(japonica). EU871049(Wx-hp:haopi), AB535524(Wx-oz:Hokkai287), AB008794(Wx-b:Taichung65), AB008795(Wx-a:Patpaku). X53694, AF515480, AF515481, AF515482, AF515483, AF031162, AP002542, AF141954, AF141955, X65183, X64108, AB066093, X62134, AF488413. HQ712158-HQ712165. AY136767-AY136784.  AF092443, AF092444. AB281428-AB281462. DQ280600-DQ280604, DQ280606-DQ280609, DQ280611-DQ280623, DQ280625-DQ280632, DQ280634-DQ280637, DQ280640-DQ280646, DQ280648-DQ280671, DQ280672-DQ280675, AB066094, DQ415640. GU727213-GU727295 (O.sativa and other wild rice species).  FJ811412-FJ811452 (Oryza glaberrima, Oryza barthii, Oryza nivara).  EF600036 (O. australiensis), EF600037 (O. rufipogon).  DQ901803-DQ901832 (wild rice species). EF069974-EF070045 (O. sativa and wild rice species). JQ415868-JQ415911 (wild rice species). X86325 (indica, 5' upstream). KJ871342-KJ871345 (indica, includes exon 1 and intron 1). HQ712163. a candidate gene for qK6.1 (QTL for K  concentration). GO:1901698: response to nitrogen compound. TO:0001069: cooking quality trait. 	 Biochemical character,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits - Dormancy	Os06g0133000	LOC_Os06g04200.4, LOC_Os06g04200.3, LOC_Os06g04200.2, LOC_Os06g04200.1	GR:0061010		22.0	GO:0004373 - glycogen (starch) synthase activity, GO:0009011 - starch synthase activity, GO:0005982 - starch metabolic process, GO:0009408 - response to heat, GO:0009507 - chloroplast, GO:0010229 - inflorescence development, GO:0009845 - seed germination, GO:0009501 - amyloplast, GO:0009536 - plastid, GO:0009415 - response to water, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0033840 - NDP-glucose-starch glucosyltransferase activity, GO:0009568 - amyloplast starch grain, GO:0019252 - starch biosynthetic process, GO:0009413 - response to flooding	TO:0000696 - starch content, TO:0000011 - nitrogen sensitivity, TO:0000196 - amylose content, TO:0000162 - seed quality, TO:0000237 - water stress trait, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000286 - submergence sensitivity, TO:0000382 - 1000-seed weight, TO:0000266 - chalky endosperm, TO:0000621 - inflorescence development trait, TO:0000098 - glutinous endosperm	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0007022 - seed imbibition stage , PO:0009089 - endosperm , PO:0007632 - seed maturation stage , PO:0007057 - 0 seed germination stage 
745	DP1	dp1, pa, DP1/PAL1, PAL1, OsDP1, OsAHL11, AHL11	DEPRESSED PALEA 1	depressed palea1, depressed palea 1, depressed palea-1, DEPRESSED PALEA1, PALEALESS1, OsDEPRESSED PALEA1, AT-hook motif DNA-binding protein 11, AT-hook motif nuclear localized protein 11		dp1-1, dp1-2, dp1-3	6	The palea is undergrown and hence the spikelet becomes crescent shape and kernel shape and size also abnormal. [294] PO:0009038; palea ; PO:0009009; embryo ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0136900	LOC_Os06g04540.1	GR:0060238		24.0	GO:0007275 - multicellular organismal development, GO:0003700 - transcription factor activity, GO:0010228 - vegetative to reproductive phase transition, GO:0009651 - response to salt stress, GO:0003680 - AT DNA binding, GO:0005634 - nucleus	TO:0000484 - seed shape, TO:0006001 - salt tolerance, TO:0000449 - grain yield per plant, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009038 - palea , PO:0009009 - plant embryo 
746	MS1	ms1(sf), ms1(t)*, ms64, ms1, sf	MALE STERILE 1	male sterile1, male sterile 1, male sterile-64, male sterile-1			6	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060538		27.0	GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
747	ENSE1	En Se1, EnSe1(t), EnSe1	ENHANCER FOR PHOTOSENSITIVITY	Enhancer for photosensitivity (Se1), Enhancer for photoperiod-sensitivity (Se1)			6	Enhancer to Se1. Enhancement of photoperiod sensitivity of Se1. Strong sensitivity to photoperiod. PO:0000229; floral meristem ; PO:0006318; floret (sensu Poaceae). GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage.	 Reproductive organ - Heading date			GR:0060294		28.0	GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity, TO:0000344 - days to flower	PO:0009082 - spikelet floret , PO:0000229 - flower meristem 
748	PGD2	Pgd2	PHOSPHOGLUCONATE DEHYDROGENASE 2	Phosphogluconate dehydrogenase2, Phosphogluconate dehydrogenase 2, Phosphogluconate dehydrogenase-2	PHOSPHOGLUCONATE DEHYDROGENASE 2	Pgd2-1, Pgd2-2	6	Dimer. P(PAGE-TC, ST-C).	 Biochemical character			GR:0060601		29.0	GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity		
749	V3	v3, RNRL1, rnrl1, RNR1, RNRL, Osv3, OsRNRL1, OsRNR1, OsRNRL	VIRESCENT 3	virescent3, virescent 3, virescent-3, ribonucleotide reductase large subunit 1, RIBONUCLEOTIDE REDUCTASE 1	RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1		6	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. EU602344. APC regulator. APC regulatory subunit.	 Coloration - Chlorophyll	Os06g0168600	LOC_Os06g07210.1	GR:0060982		30.0	GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
750	GA1	ga1	GAMETOPHYTE GENE 1	gametophyte gene1, gametophyte gene 1, gametophyte gene-1			6		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060343		36.0	GO:0019953 - sexual reproduction		
752	C	C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E, Os2R_MYB63, 2R_MYB63, OsC1PLSr, C1PLSr	CHROMOGEN FOR ANTHOCYANIN	Chromogen for anthocyanin, Chromogen, Rice C1 anthocyanin regulatory gene, myb transcription factor 6, transcription factor MYB6, Oryza saliva C1, rice homolog of maize C1, Purple Leaf 6. GLABRA1E, GLABRA 1E, R2R3-MYB Transcription Factor 63		C-Bs, C-B, C-Bp, C-Bt, C-Br, C-Bd, C-Bk, C-Bc, C-Bm, pl6	6	Produce the precursor substance of pigment (chromogen) such as flabon and catechin. Complementary with A. Os-C1 is a candidate for the C. MK636605. R2R3-MYB. Y15219. AB111867-AB111875:Oryza sativa C1, AB111876-AB111883:Oryza rufipogon C1, AB111884:Oryza glaberrima C1, AB111884:Oryza glumipatula C1. a Colorless1/Purple leaf (C1/Pl) like regulatory gene. HQ379701-HQ379705. metabolite: Cyanidin 3-O-glucoside. a rice homologs of the Arabidopsis R2R3 MYB transcription factor GLABRA1 (GL1). TO:0020076: phenolic compound content. PO:0025616: lemma apiculus. PO:0030123: panicle inflorescence.  OrC1 (Oryza rufipongon functional chromogen gene C).	 Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Inflorescence,  Other,  Seed - Morphological traits,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os06g0205100	LOC_Os06g10350.1	GR:0061106		44.0	GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization, GO:0009718 - anthocyanin biosynthetic process, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0009812 - flavonoid metabolic process, GO:0006979 - response to oxidative stress, GO:0005634 - nucleus	TO:0002675 - gibberellic acid content, TO:0001018 - transpiration rate, TO:0000522 - stomatal conductance, TO:0001015 - photosynthetic rate, TO:0002715 - chloroplast development trait, TO:0000258 - leaf thickness, TO:0000605 - hydrogen peroxide content, TO:0002660 - cytokinin content, TO:0002667 - abscisic acid content, TO:0002657 - oxidative stress, TO:0000316 - photosynthetic ability, TO:0000071 - anthocyanin content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000185 - stigma color, TO:0000290 - flavonoid content, TO:0000340 - total soluble sugar content, TO:0000276 - drought tolerance, TO:0000264 - lemma and palea color, TO:0000364 - leaf collar color, TO:0000140 - apiculus color, TO:0000426 - internode color, TO:0000190 - seed coat color, TO:0000141 - awn color, TO:0000367 - basal leaf sheath color, TO:0000400 - sterile lemma color, TO:0000326 - leaf color, TO:0002724 - leaf sheath color	PO:0007632 - seed maturation stage , PO:0009049 - inflorescence , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0006032 - lemma awn , PO:0006012 - leaf collar , PO:0009073 - stigma , PO:0020104 - leaf sheath , PO:0009038 - palea , PO:0005005 - shoot internode , PO:0025349 - awn , PO:0009025 - vascular leaf , PO:0006033 - paleal apiculus , PO:0009010 - seed , PO:0009037 - lemma 
753	S5	S5-3, S5-4	HYBRID STERILITY 5	Hybrid sterility5, Hybrid sterility 5, Hybrid sterility-5		S5-n, S5-j, S5-i, S5-p, S5i, S5j, S5n	6	wide compatibility. EU889293 (S5-n), EU889294 (S5-j), EU889295 (S5-i). PO:0006465; integument (sensu Poaceae) ; PO:0006464; megaspore (sensu Poaceae) ; PO:0006462; nucellus (sensu Poaceae) ; PO:0006457; ovule (sensu Poaceae) ; PO:0006015; female archesporial cell ; PO:0006463; megasporocyte (sensu Poaceae) ; PO:0009046; flower. GRO:0007019; 4.02-embryo sac development. A killer-protector system at the S5 locus encoded by three tightly linked genes [Open Reading Frame 3 (ORF3) to ORF5] regulates fertility in indica-japonica hybrids (Yang et al. 2012). S5-4: JX138502, JX138503, JX138504, JX138505, S5-3: JX138498, JX138499, JX138500, JX138501. HQ846206 to HQ846327 (from O.sativa, O. rufipogon and O. nirvara), JF298922 (from O. barthii). KF892971-KF893059.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0213100	LOC_Os06g11010.1	GR:0060812		49.0	GO:0005739 - mitochondrion, GO:0005618 - cell wall, GO:0004190 - aspartic-type endopeptidase activity, GO:0005737 - cytoplasm, GO:0009554 - megasporogenesis, GO:0009553 - embryo sac development, GO:0007275 - multicellular organismal development, GO:0006508 - proteolysis	TO:0000358 - female sterility, TO:0000180 - spikelet fertility, TO:0000416 - embryosac abortion, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009046 - flower , PO:0000431 - megasporocyte , PO:0020021 - integument , PO:0020020 - nucellus , PO:0006015 - female archesporial cell , PO:0020019 - megaspore , PO:0020003 - plant ovule 
754	AMP3	Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1	AMINOPEPTIDASE 3	Aminopeptidase3, Aminopeptidase 3, Aminopeptidase-3	AMINOPEPTIDASE 3	Amp3-0, Amp3-1, Amp3-2, Amp3-3, Amp3-4, Amp3-5, Amp3-8	6	P(ST-H). 3 bands appear in L & C(ST-H).	 Biochemical character			GR:0060038		53.0	GO:0004177 - aminopeptidase activity		
755	EST2	Est2, Est_2	ESTERASE 2	Esterase2, Esterase 2, Esterase-2	ESTERASE 2	Est2-0, Est2-1 (Est2-S), Est2-2 (Est2-F)	6	Monomer. alpha- and beta-NAc-specific brown band. P(PAGE-TC, PAGE-TBE, ST-H), L(AG, ST-H), C(ST-H). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060306		47.0	GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
756	BL3	bl3	BROWN LEAF SPOT 3	brown leaf spot3, brown leaf spot 3, brown leaf spot-3			6	Brown spots appear after panicle emergence, first on the leaves and then by maturity extend into the surface of glumes. [499] PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060084		55.0	GO:0015996 - chlorophyll catabolic process	TO:0000069 - variegated leaf, TO:0000221 - glume color, TO:0000326 - leaf color, TO:0000063 - mimic response	PO:0009088 - seed coat , PO:0009025 - vascular leaf 
757	ALK	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a	ALKALI DEGENERATION	"alkali degeneration, ALKALI DEGENERATION, \"Soluble starch synthase 2-3, chloroplast precursor\", \"Soluble starch synthase 2-3, chloroplast\", \"Soluble starch synthase 2-3, chloroplastic/amyloplastic\", Soluble starch synthase II-3, Starch synthase IIa, soluble starch synthase IIa, Starch synthase-IIa, Starch synthase IIa"	SOLUBLE STARCH SYNTHASE 2-3, CHLOROPLAST	SSII-3-I, SSII-3-II, ss2a, ALKa, ALKb, ALKc/SSIIai	6	This gene causes the disintegration of endosperm starch granules in alkali solution. This gene is located on chromosome 6 flanked by RFLP markers R2147 and C1478 and to the same location with gel(t), acl(t) and SSIIa. This trait is used for identification. EC=2.4.1.21 P0C586(indica). Q0DDE3(japonica). AY423717, AF419099. GRO:0007045; 09-mature grain stage.  HQ712150, HQ712151, HQ712152, HQ712153, HQ712154, HQ7121525, HQ712156, HQ712157.  HQ679416-HQ679573 (O. sativa and other wild rice species). TO:0001069: cooking quality trait. 	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance	Os06g0229800	LOC_Os06g12450.1	GR:0060034,GR:0061112		56.0	GO:0009011 - starch synthase activity, GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0009413 - response to flooding, GO:0009501 - amyloplast	TO:0000097 - amylopectin content, TO:0000134 - alkali digestion, TO:0000488 - seed composition based quality trait, TO:0000462 - gelatinization temperature, TO:0000286 - submergence sensitivity, TO:0000379 - cool paste viscosity	PO:0009010 - seed , PO:0009089 - endosperm 
758	ST1	st1(ws1), ws1, st1, OsST1, RNRS1, OsRNRS1, rnrs1, RNRS, SDL/RNRS1, SDL, OsSDL, NSL2, OsNSL2	STRIPE 1	stripe1, stripe 1, stripe-1, ribonucleotide reductase small subunit 1, stripe and drooping leaf, Narrow and Stripe Leaf 2	RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 1	sdl, nsl2	6	GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. EU602345. homologous to Arabidopsis TSO2. GO:0099402: plant organ development. GO:0090391: granum assembly. PO:0030123: panicle inflorescence. GO:2000024: regulation of leaf development. TO:0000847: panicle inflorescence morphology trait. TO:0020109: vascular bundle development trait. GO:2000573: positive regulation of DNA biosynthetic process.	 Reproductive organ - panicle,  Character as QTL - Plant growth activity,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os06g0257450	LOC_Os06g14620.1	GR:0060928		65.0	GO:0015995 - chlorophyll biosynthetic process, GO:0045740 - positive regulation of DNA replication, GO:0008284 - positive regulation of cell proliferation, GO:0010229 - inflorescence development, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0048366 - leaf development, GO:0045787 - positive regulation of cell cycle, GO:0009658 - chloroplast organization, GO:0033305 - chlorophyll a biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000621 - inflorescence development trait, TO:0000495 - chlorophyll content, TO:0000456 - spikelet number, TO:0000370 - leaf width, TO:0000293 - chlorophyll-a content, TO:0000069 - variegated leaf, TO:0000455 - seed set percent, TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0000295 - chlorophyll-b content, TO:0000655 - leaf development trait, TO:0000357 - growth and development trait, TO:0000326 - leaf color, TO:0000470 - vascular tissue related trait, TO:0000432 - temperature response trait	PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0001050 - leaf development stage , PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
759	PGI2	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b, SIS, OsSIS, OsPGI2	PHOSPHOGLUCOISOMERASE 2	"Phosphoglucoisomerase2, Phosphoglucoisomerase 2, Phosphoglucoisomerase-2, Glucose-6-phosphate isomerase, cytosolic B, Phosphoglucose isomerase B, Phosphohexose isomerase B, \"glucose-6-phosphate isomerase, cytosolic B\", sugar isomerase"	PHOSPHOGLUCOISOMERASE 2	Pgi2-1, Pgi2-2, Pgi2-3, Pgi2-4	6	Dimer. P(ST-H,PAGE-TC),L&C(ST-H). Interlocus hybrid bands occur. Differential allele frequencies between Indica and Japonica types. Thermomorphs are known. EC=5.3.1.9 P42863. D45218.	 Biochemical character,  Coloration - Anthocyanin	Os06g0256500	LOC_Os06g14510.3, LOC_Os06g14510.2, LOC_Os06g14510.1	GR:0060603		67.0	GO:0005829 - cytosol, GO:0006094 - gluconeogenesis, GO:0009813 - flavonoid biosynthetic process, GO:0004347 - glucose-6-phosphate isomerase activity, GO:0006096 - glycolysis		
760	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, OsHd1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21	PHOTOSENSITIVITY 1	Photosensitivity1, Photosensitivity 1, Photoperiod sensitivity 1, Heading date, Photoperiod-sensitivity-1, HEADING DATE 1, Arabidopsis CONSTANS(CO) gene ortholog, ortholog of Arabidopsis CONSTANS, B-box-containing protein 18, CCT domain-containing gene 21, CCT (CO, CO-LIKE and TOC1) domain protein 21, CCT domain protein 21	HD1 PROTEIN 	Se1-e, Se1-n, Se1-t, Se1-s, Se1-u, hd1, Hd1EH, Hd1NB, Hd1Vol, oscct21	6	Earliness gene through controlling photoperiod response. Q9FDX8. AB041837, AB041838, AB041839, AB041840, AB041841, AB041842, AP003044. AB375859.  JN594404-JN594499 (O.sativa and other wild rice species). AB474759-AB474785 (O.sativa and other wild rice species). JN402205-JN402280 (O.sativa and other wild rice species). PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. FJ581043-FJ581047, GQ407104-GQ407107 (indica and other wild rice species). AP005813, AP003044. MT500123 - MT500238. a rice ortholog of Arabidopsis gene for circadian clock component. KM063441-KM063573 (134 sequences out of these, O.sativa and other wild rice species).an Arabidopsis CONSTANS ortholog. Protein Data Bank under PDB:7C9O (DNA-bound HD1CCT/GHD8/OsNF-YC2).	 Reproductive organ - Heading date,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os06g0275000	LOC_Os06g16370.1	GR:0060860		67.0	GO:0048571 - long-day photoperiodism, GO:0030154 - cell differentiation, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0048572 - short-day photoperiodism, GO:0009648 - photoperiodism, GO:0009416 - response to light stimulus, GO:0010229 - inflorescence development, GO:0007623 - circadian rhythm, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009909 - regulation of flower development, GO:0009908 - flower development, GO:0048573 - photoperiodism, flowering, GO:0003677 - DNA binding, GO:0009266 - response to temperature stimulus, GO:0003700 - transcription factor activity, GO:0048576 - positive regulation of short-day photoperiodism, flowering	TO:0000432 - temperature response trait, TO:0000137 - days to heading, TO:0000075 - light sensitivity, TO:0000448 - filled grain percentage, TO:0000050 - inflorescence branching, TO:0002616 - flowering time, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0002759 - grain number, TO:0000229 - photoperiod sensitivity, TO:0000371 - yield trait, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009025 - vascular leaf , PO:0009013 - portion of meristem tissue , PO:0007616 - flowering stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0025034 - leaf 
761	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2	PYRICULARIA ORYZAE RESISTANCE Z	Pyricularia oryzae resistance-z, Magnaporthe grisea resistance-z, Blast resistance z, Pyricularia oryzae resistance-2, Magnaporthe grisea resistance-2, Blast resistance 2		Pi z-t (Pi-zt, Piz-t, Pi-z(t)), Pi z-5 (Pi-z5, Piz-5), Pi2-1	6	Resistant to rice blast disease. Variety 'Fukunishiki' and its parental cultivar Zenith have this gene. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. DQ352040(Piz-t), DQ352453(Nbs4-Pi=Pi2), Pi2-1 (Tianjingyeshengdao). The Pi2 gene encodes a protein with a nucleotide-binding site and leucine-rich repeat (LRR) domain. Pi2(t) was renamed Pi-z5. Because Pi-2(t) was allelic to Pi-z, Pi-z is used for showing the locus and the first letter of the donor variety 5173 is given as a superscript as Pi-z5 (Kinoshita et al. 1994). The resistance gene in Toride 1 was allelic to Pi-z and designated as Pi-zt (Yokoo & Kiyosawa 1970). Piz-t gene is a Pi2 allele in the rice cultivar Toride 1 (Zhou et al. 2006). GQ280265-GQ280269 (the genomic sequences of the Pi2/9 locus in four wild Oryza species: O. nivara, O. punctata, O. officinalis and O. minuta) Pi9 in Hu et al. 2021.	 Tolerance and resistance - Disease resistance	Os06g0286700	LOC_Os06g17900.1	GR:0060628		69.0	GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000522 - stomatal conductance, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0020141 - stem node , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009047 - stem 
762	S6		HYBRID STERILITY 6	Hybrid sterility6, Hybrid sterility 6, Hybrid sterility-6		S6-a, S6a, S6n	6	Sporogametophytic interaction. Semi-sterility in heterozygotes S6/S6-a  due to elimination of gametes with S6-a. [RGN6:6] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060813		74.0	GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
763	D9	d9, dwf8	DWARF CHINESE	Chinese dwarf, dwarf-9			6	Semi-dwarf with normal grains. PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060191		76.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
764	RCN1	rcn1	REDUCED CULM NUMBER 1	reduced culm number1, reduced culm number-1			6	Number of panicles is extremely reduced, and plant height is about 50% of that of the original variety, A-5 Akamuro.  The character reverts to normal under high temperature. [256] PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060726		77.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth, GO:0009266 - response to temperature stimulus	TO:0000152 - panicle number, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000432 - temperature response trait, TO:0000576 - stem length	PO:0009047 - stem 
765	GF1	gf1	GOLD FURROWS OF HULL 1	gold furrows of hull1, gold furrows of hull 1, gold furrows of hull-1			6	PO:0009038; palea ; PO:0009088; seed coat ; PO:0009037; lemma. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0060363		80.0	GO:0009812 - flavonoid metabolic process	TO:0000190 - seed coat color, TO:0000484 - seed shape, TO:0000264 - lemma and palea color	PO:0009037 - lemma , PO:0009038 - palea , PO:0009088 - seed coat 
766	CHL4	chl4	CHLORINA 4	chlorina4, chlorina 4, chlorina-4			6	PO:0009006; shoot ; PO:0009025; leaf ; PO:0006343; axillary shoot. GRO:0007049; 03-tillering stage.	 Coloration - Chlorophyll			GR:0060121		82.0	GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000296 - vegetative vigor, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000346 - tiller number, TO:0000496 - carotenoid content	PO:0009006 - shoot system , PO:0009025 - vascular leaf , PO:0006343 - axillary shoot system 
767	BL2	bl2(blm), blm, bl2	BROWN LEAF SPOT 2	brown leaf spot2, brown leaf spot 2, brown leaf spot-2			6	Black spots appear on the leaves after the middle stage of growth and spread along the growth of plant.[301] PO:0009047; stem ; PO:0009088; seed coat ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060083		83.0	GO:0015996 - chlorophyll catabolic process	TO:0000056 - stem color, TO:0000069 - variegated leaf, TO:0000326 - leaf color, TO:0000063 - mimic response, TO:0000221 - glume color	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009088 - seed coat 
768	FS1	fs1	FINE STRIPE 1	fine stripe1, fine stripe 1, fine stripe-1			6	Minute white flecks or fine white stripes at the tip and margin of leaf blade in young plants.  The expression of fs is dependent upon the environmental conditions, showing no difference from fs+ under higher temperature. [298] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060336		95.0	GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf 
769	CL	Cl	CLUSTERED SPIKELETS	Clustered spikelets			6	Internode of upper half of rachilla being shortened, spikelets appear grown together from tha same place. [301] PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060141		96.0	GO:0007275 - multicellular organismal development	TO:0000180 - spikelet fertility, TO:0000040 - panicle length, TO:0000089 - panicle type	PO:0009049 - inflorescence 
770	MS9	ms9	MALE STERILE 9	male sterile9, male sterile 9, male sterile-9			6	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060546		100.0	GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000199 - genic male sterility	PO:0009066 - anther 
771	HLA	Hla, Hl1	HAIRY LEAF-A	Hairy leaf-a, Hairy leaf-1			6	Complementary with Hlb. Thick and long hairs on leaves. Pleiotripic effects on hair length of panicle branches but no remarkable effect in pubescence of floral glumes. [299] PO:0020039; leaf lamina.	 Vegetative organ - Leaf			GR:0060447		118.0	GO:0030154 - cell differentiation	TO:0000055 - leaf lamina pubescence	PO:0020039 - leaf lamina 
772	UR1	Ur1	UNDULATE RACHIS 1	Undulate rachis1, Undulate rachis 1, Undulate rachis-1			6	Incomplete dominant gene produces undulation of primary and secondary rachis branches.This gene increases spikelet number per panicle owing to increase of secondary branches.	 Vegetative organ - Shoot apical meristem(SAM)			GR:0060978		125.0	GO:0007275 - multicellular organismal development	TO:0000342 - panicle axis angle	
773	D58	d58, dwf39	DWARF SMALL GRAINED	small grained dwarf, dwarf-58			6	PO:0009047; stem.	 Vegetative organ - Culm			GR:0060223		139.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000391 - seed size	PO:0009047 - stem 
774	BAMY1	betaAmy1, BetaAmy1, Amy10	BETA AMYLASE 1	Beta Amylase isozyme1, Beta Amylase isozyme 1, Beta Amylase 1, Beta amylase isozyme-1, Amylase(Beta)-10, Amylase-10	BETA AMYLASE 1 	beta-Amy1-0, beta-Amy1-1, beta-Amy1-2, beta-Amy1-3	7	beta-amylase activity in germinating seeds.S(PAGE).	 Biochemical character			GR:0060076			GO:0016161 - beta-amylase activity, GO:0004556 - alpha-amylase activity		
775	CALB	CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2	CALMODULIN B	Calmodulin-2, Calmodulin-b, Calmodulin-1, Calmodulin 1-2	CALMODULIN B		7	Calmodulin. Q0JNS6 (japonica), A2WN93 (indica). D15079.	 Biochemical character	Os07g0687200	LOC_Os07g48780.1, LOC_Os07g48780.2	GR:0060108			GO:0019722 - calcium-mediated signaling, GO:0010099 - regulation of photomorphogenesis, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005516 - calmodulin binding, GO:0005509 - calcium ion binding, GO:0009846 - pollen germination		
776	D60	d60 (sd(t)), sd(t), dwf41, d60	DWARF HOKURIKU 100	dwarf (Hokuriku 100), dwarf-60			7	30% shorter in plant height compared with the original variety. Lodging tolerance. PO:0009047; stem ; PO:0005005; shoot internode.	 Vegetative organ - Culm			GR:0060225			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000069 - variegated leaf, TO:0000207 - plant height, TO:0000145 - internode length	PO:0009047 - stem , PO:0005005 - shoot internode 
777	D7	d7, dwf7	DWARF HEIEIDAIKOKU OR CLEISTOGAMOUS	heieidaikoku or cleistogamous dwarf, dwarf-7			7	"Similar to \"Daikoku\", but slightly taller height and cleistogamous glumes.[10003] PO:0009047; stem ; PO:0009039; glume ; PO:0009049; inflorescence ; PO:0009037; lemma ; PO:0006318; floret (sensu Poaceae) ; PO:0009038; palea. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage."	 Vegetative organ - Culm			GR:0060190			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000474 - glume opening, TO:0000576 - stem length, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000089 - panicle type, TO:0000499 - flower anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009037 - lemma , PO:0009038 - palea , PO:0009039 - glume , PO:0009047 - stem , PO:0009049 - inflorescence 
778	DS3	ds3(t), ds3	DESYNAPSIS 3	desynapsis3, desynapsis 3, desynapsis-3			7		 Reproductive organ - Pollination, fertilization, fertility - Meiosis			GR:0060251			GO:0007135 - meiosis II		
779	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b	HEADING DATE 1	Heading date1, Heading date 1, Heading date-1, modifier for Ef1, Heading time 1		e1	7	modifier for Ef1.  (m Ef1-a, m Ef1-b) PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060275		57.0	GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity, TO:0000137 - days to heading	PO:0009049 - inflorescence , PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue 
780	ELF2	elf2*, elf2	ELONGATION FACTOR 1 BETA CHAIN 2	elongation factor 1 beta chain2, elongation factor 1 beta chain 2, elongation factor 1 beta chain-2	ELONGATION FACTOR 1 BETA CHAIN 2		7		 Biochemical character			GR:0060290			GO:0006412 - translation, GO:0003746 - translation elongation factor activity		
781	EST1	Est1	ESTERASE 1	Esterase1, Esterase 1, Esterase-1	ESTERASE 1	Est1-0, Est1-1 (Est1-S)	7	Monomer. beta-NAc-specific red band. P(PAGE-TBE, ST-H), L(AG).	 Biochemical character			GR:0060305			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
782	EST7	Est7	ESTERASE 7	Esterase7, Esterase 7, Esterase-7	ESTERASE 7	Est7-0, Est7-1.	7	P(ST).	 Biochemical character			GR:0060311			GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
783	EST9	Est9 (Est c1), Est8, Estcl, Est c1, Est_9	ESTERASE 9	Esterase9, Esterase 9, Esterase-9	ESTERASE 9	Est9-1, Est9-2.	7	Dimer. Cathodal side, beta-NAc-specific red band. P(ST-H).	 Biochemical character			GR:0060313		99.0	GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016787 - hydrolase activity		
784	GA11	ga11	GAMETOPHYTE GENE 11	gametophyte gene11, gametophyte gene 11, gametophyte gene-11		ga11-a	7	Distorted segregation due to selective fertiization caused by ga11 and ga11-a.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060353		124.0	GO:0019953 - sexual reproduction		
786	HWD2	hwd2	HYBRID WEAKNESS D2	hybrid weakness d2, hybrid weakness-d2			7	Weakness occurs in F2 from varietal crosses having complementary gene hwd1. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060462			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000046 - f2-generation sterility, TO:0000355 - heterosis	PO:0009046 - flower 
787	LP1	lp1	LONG PALEA 1	long palea1, long palea 1, long palea-1			7	duplicate gene with dp2. The palea outgrows the lemma.[543] PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060510			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009038 - palea , PO:0009037 - lemma 
788	MAL1	Mal1, Mal I, Mal-I, Mal-1	MALATE DEHYDROGENASE(NADP) 1	Malate dehydrogenase(NADP)1, NADP-malic enzyme 1, NADP-dependent malate dehydrogenase 1, malic enzyme-1	MALATE DEHYDROGENASE(NADP) 1	Mal1-1, Mal1-2	1	P(PAGE-TC, ST-C). Mal differs from Mdh in that it needs NADP as coenzyme in the substrate, while Mdh needs NAD. Mal-1 is active in the green part of the plumule. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060515			GO:0016615 - malate dehydrogenase activity, GO:0030060 - L-malate dehydrogenase activity		
789	MAL2	Mal2	MALATE DEHYDROGENASE(NADP) 2	Malate dehydrogenase(NADP)2	MALATE DEHYDROGENASE(NADP) 2	Mal2-1, Mal2-2	7	Monomers. The band migrates faster than that of Mal1. Active in the green part of the plumule. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060516			GO:0016615 - malate dehydrogenase activity		
790	MS8	ms8	MALE STERILE 8	male sterile8, male sterile 8, male sterile-8			7	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060545			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
791	PI17	Pi17(t), Pi17, Pi-17(t)	PYRICULARIA ORYZAE RESISTANCE 17	Pyricularia oryzae resistance 17, Magnaporthe grisea resistance-17, Blast resistance 17			7	Resistant  to several races of Pyricularia grisea. [RGN13:18]. PO:0009025; lea. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Map position (94.0-104.0 cM). Original line is DJ123 (Indica).	 Tolerance and resistance - Disease resistance			GR:0060646			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000492 - leaf shape, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
792	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)	PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 1	photoperiod sensitive genic male sterile1, photoperiod sensitive genic male sterile 1, photoperiod-sensitive male sterility-1			7	dupliclate gene. Male sterile under longday conditions and fertile under short day conditions. pgms. PO:0009066; anther ; PO:0009046; flower. The LOC_Os07g12130 locus is the most likely candidate gene for pms1(t).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060681			GO:0009650 - UV protection, GO:0009648 - photoperiodism, GO:0007275 - multicellular organismal development	TO:0000009 - genic male sterility-photoperiod sensitive	PO:0009066 - anther , PO:0009046 - flower 
793	POX3	Pox3	PEROXIDASE 3	Peroxidase3, Peroxidase 3, Peroxidase-3	PEROXIDASE 3	Pox3-1 (Pox3-3C), Pox3-2 (Pox3-5C)	7	P(ST).	 Biochemical character			GR:0060687			GO:0004601 - peroxidase activity		
794	POX4	Pox4	PEROXIDASE 4	Peroxidase4, Peroxidase 4, Peroxidase-4	PEROXIDASE 4	Pox4-1, Pox4-2	7	P(ST).	 Biochemical character			GR:0060688			GO:0004601 - peroxidase activity		
795	PRO4	Pro4*, Pro4	PROLAMIN 4	Prolamin4, Prolamin 4, Prolamin-4	PROLAMIN 4		7	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060695			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
796	R5S2	R5s2*, R5s2	5S RIBOSOMAL DNA 2	5S ribosomal DNA2, 5S ribosomal DNA 2, 5S ribosomal DNA-2			7		 Biochemical character			GR:0060713			GO:0003735 - structural constituent of ribosome, GO:0000182 - rDNA binding, GO:0005840 - ribosome, GO:0006412 - translation		
797	RF4	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4	RESTORATION OF FERTILITY 4	Pollen fertility restoration1, Pollen fertility restoration 1, Fertility restoration1 for 'WA' cytoplasm, Pollen fertility restoration-4			7	duplicate.  Fertility restoration (WA cytoplasm), Fertility restoration for WA cytoplasm. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060743			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
798	RL6	rl6(t), cul13	ROLLED LEAF 6	rolled leaf6, rolled leaf 6, rolled leaf-6, curl leaf-13			7	PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060769			GO:0030154 - cell differentiation	TO:0000492 - leaf shape, TO:0000370 - leaf width, TO:0000085 - leaf rolling	PO:0009025 - vascular leaf 
799	S7	S7	HYBRID STERILITY 7	Hybrid sterility7, Hybrid sterility 7, Hybrid sterility-7		S7-n, S7-kn, S7-ai, S7-cp, S7cp, S7i, S7ai, S7n	7	Semi-sterility is expressed as an allelic interactin such as S7-ai/S7-cp. [RGN9:3] a tetratricopeptide repeat domain containing protein. S-7kn, S-7cp, S-7ai, and S-7n cause female sterility in the indica-japonica hybrid (Yanagihara et al., 1992). 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os07g0455100	LOC_Os07g27180.1	GR:0060814		74.0	GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0009046 - flower 
800	S9		HYBRID STERILITY 9	Hybrid sterility9, Hybrid sterility 9, Hybrid sterility-9		S9-i, S9-kn	7	Semi-sterility is expressed as an allelic interactin such as S9-i/S9-kn. [RGN10:9] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060816			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0009046 - flower 
801	SE2	se2	PHOTOSENSITIVITY 2	photosensitivity2, photosensitivity 2, photoperiod-sensitivity-2			7	PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060861			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
802	SE8	Se8(t)*	PHOTOSENSITIVITY 8	Photosensitivity8, Photosensitivity 8, Photoperiod-sensitivity-8			7	PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060867			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity, TO:0000137 - days to heading	PO:0009010 - seed , PO:0009082 - spikelet floret , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence 
803	SPL9	spl9	SPOTTED LEAF 9	spotted leaf9, spotted leaf 9, spotted leaf-9			7	Small blackish brown spots on leaves and culms but not thick, appear only after heading or flowering time.  Induced by irradiation on Norin 8. [137] PO:0009047; stem ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060910			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009047 - stem , PO:0009025 - vascular leaf 
804	ST8	st8	STRIPE 8	stripe8, stripe 8, stripe-8			7	This mutant exhibits white stripes on olderleaves at the seedling stage. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060935			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
805	UNB	Unb, Un2	UNEVEN GRAIN B	Uneven grain B, Uneven grain-b, Uneven grain-2			7	Complimentary with Una. The tip of the palea side of the kernel out-grows the tip of the lemma side. PO:0009038; palea ; PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060977			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape	PO:0009038 - palea , PO:0009010 - seed 
806	WP1	wp1	WHITE PANICLE 1	white panicle1, white panicle 1, white panicle-1			7	The panicles of this recessive mutant are white instead of green from the time of exsertion to early grain filling.  Grains are normal straw colored at maturity. [399] PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0061002		32.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000264 - lemma and palea color, TO:0000495 - chlorophyll content, TO:0000077 - shoot anatomy and morphology trait	PO:0009049 - inflorescence 
807	WBPH1	Wph1(Wbph), Wbph1, Wph1	WHITEBACKED PLANTHOPPER RESISTANCE 1	Whitebacked planthopper resistance1, Whitebacked planthopper resistance 1, Whitebacked planthopper resistance-1			7		 Tolerance and resistance - Insect resistance			GR:0061004			GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
808	XA K*	xa k*, XAK, xak*, xak	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE K	Xanthomonas oryzae pv. oryzae resistance-k, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE K, Xanthomonas campestris pv. oryzae resistance-k			7		 Tolerance and resistance - Disease resistance			GR:0061036			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
809	Z10	z10	ZEBRA 10	zebra10, zebra 10, zebra-10			7	This mutant shows irregular yellow bands on leaf blades until 40 days after germination. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061056			GO:0015995 - chlorophyll biosynthetic process	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
810	D6	d6(d34), d34, dwf6	DWARF EBISUMOCHI DWARF OR TANKANSHIRAZASA	ebisumochi dwarf or tankanshirazasa dwarf, dwarf-6			7	Dwarf. Sinuous panicle neck and leaves with lopped blades. The second and further internodes are extremely short. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060189			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000492 - leaf shape, TO:0000089 - panicle type, TO:0000207 - plant height, TO:0000576 - stem length	PO:0009049 - inflorescence , PO:0009047 - stem , PO:0009025 - vascular leaf 
811	G1	g1 (lng), lng, g1, ELE, Os ELE, OsG1, G1/ELE, LSL2, OsLSL2	LONG STERILE LEMMAS 1	long sterile lemmas1, long sterile lemmas 1, long sterile lemmas-1, elongated empty glume, long sterile lemma/glume1, long sterile lemma 2		g1-1, g1-2, g1-3, g1-4, ele, g1, g1-ele, g1-6, osg1-1, osg1-2, osg1-3, osg1-4, osg1-5, osg1-6, lsl2	7	Steril lemmas grow long as same as lemma. Q8GVZ6. AB512480(OsG1), AB512486(OgG1-1,W0613), AB512487(OgG1-2, W0613), AB512488(OgG1-1, W1194), AB512489(OgG1-2, W1194). FJ502130. G1 is a member of a plant-specific gene family that encodes proteins with ALOG domain. DUF640 domain protein. LSL2 in Yang et al. 2020. TO:0000869: glume anatomy and morphology trait. GO:0090698: post-embryonic plant morphogenesis. PO:0030123: panicle inflorescence. TO:0000869: glume morphology trait. TO:1000023: lemma morphology trait. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Physiological traits - Dormancy,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0139300	LOC_Os07g04670.1	GR:0060340		6.0	GO:0003677 - DNA binding, GO:0048437 - floral organ development, GO:0005634 - nucleus, GO:0009416 - response to light stimulus, GO:0009908 - flower development, GO:0009909 - regulation of flower development, GO:0048449 - floral organ formation, GO:0010029 - regulation of seed germination, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009299 - mRNA transcription	TO:0020033 - glume length, TO:0002726 - sterile lemma shape, TO:0000557 - secondary branch number, TO:0000382 - 1000-seed weight, TO:0002672 - auxin content, TO:0000430 - germination rate, TO:0000657 - spikelet anatomy and morphology trait, TO:0000397 - grain size, TO:0000622 - flower development trait, TO:0002675 - gibberellic acid content, TO:0000391 - seed size, TO:0000240 - sterile lemma length, TO:0002660 - cytokinin content, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0007615 - flower development stage , PO:0009038 - palea , PO:0009037 - lemma , PO:0001047 - lemma development stage , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009039 - glume 
812	SPL5	spl5(bl6,spl5-1), bl6, spl5, SF3b3	SPOTTED LEAF 5	spotted leaf5, spotted leaf 5, spotted leaf-5, splicing factor 3b subunit 3		spl5-2, spl5	7	Relatively small reddish brown spots scattering over the whole surface of leaves.  They appear from tillering stage to heading time. The phenotypes of spl3, spl5 and spl7 are similar, being difficult to distingush each other. Hypersensitivity to pathogens brings in resistance to rice blast and bacterial blight. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage. KC128660. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1905628: negative regulation of serotonin biosynthetic process. GEO database: GSE61952.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic	Os07g0203700	LOC_Os07g10390.1	GR:0060906		31.0	GO:0043067 - regulation of programmed cell death, GO:0031348 - negative regulation of defense response, GO:0006587 - serotonin biosynthetic process from tryptophan, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000112 - disease resistance, TO:0000476 - growth hormone content, TO:0002674 - tryptophan content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
813	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C	BROWN PERICARP AND SEED COAT	Brown pericarp and seed coat, basic/helix-loop-helix 17, basic helix loop helix 17, GLABRA3C, GLABRA 3C	bHLH TRANSCRIPTION FACTOR 17	Rc-s, Rc-g, rc, rc-g1, SD7-1D, SD7-1d	7	Responsible for the production of the pigment in the so-called brown rice, which has dark-brown irregular speckles on a reddish brown background. [298] Basic Helix-Loop-Helix protein, bHLH TRANSCRIPTION FACTOR. AB247503, AB250059.  DQ204735, DQ204736 (Plant Cell 18 (2), 283-294 (2006)). PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. DQ885795-DQ885823 and DQ902346-DQ902352. GU261543-GU261673 (Oryza sativa and wild rice species). HM749735-HM749743 (Oryza barthii and Oryza glaberrima). JF303048-JF303056, JF303060-JF303062. O. rufipogon and O. glaberrima: JF303057-JF303059. a homologue of Arabidopsis transcription factor GL3.	 Coloration - Others,  Seed - Physiological traits - Dormancy,  Coloration - Anthocyanin	Os07g0211500	LOC_Os07g11020.1	GR:0060724		52.0	GO:0046283 - anthocyanin metabolic process, GO:0010023 - proanthocyanidin biosynthetic process, GO:0009812 - flavonoid metabolic process	TO:0000190 - seed coat color, TO:0000487 - endosperm color, TO:0000707 - pericarp color	PO:0009089 - endosperm , PO:0009088 - seed coat 
814	V11	v11	VIRESCENT 11	virescent11, virescent 11, virescent-11			7	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060990		53.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
815	Z6	z6	ZEBRA 6	zebra6, zebra 6, zebra-6			7	Irregularly spaced yellowish crossbands are kept on leaf blade and sheath through growing period. PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0061052		55.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
816	RFS	rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32	ROLLED FINE STRIPED LEAF	rolled fine striped leaf, curl leaf-7, Rolled Fine Striped, CHD-related gene 729, Chromatin Remodeling 4, crown rootless6, crown rootless 6, PICKLE RELATED1, Plant homeo-domain finger protein 32, PHD finger protein 32, chromatin remodeling factor 729		rfs, rfs-1, rfs-2, chr729, Oschr4, CHR729-1, CHR729-2, CHR729-3, Oschr4-5, Oschr4-6, Oschr4-7	7	BGIOSGA024271. B8B6D8 (indica). MK765112, MK765113. a CHR4/Mi-2-Like Chromatin Remodeling Factor. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. GO:0072593: reactive oxygen species metabolic process. GO:1904821: chloroplast disassembly. TO:0006060: leaf chlorosis. GO:0036123: histone H3-K9 dimethylation. chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. TO:0006064: rolled leaf. GO:1904276: regulation of wax biosynthetic process.  GO:0106185: histone H3-K37 methylation.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os07g0497100	LOC_Os07g31450.1	GR:0060753		66.0	GO:0040029 - regulation of gene expression, epigenetic, GO:0005524 - ATP binding, GO:0044030 - regulation of DNA methylation, GO:0009658 - chloroplast organization, GO:0007623 - circadian rhythm, GO:0016570 - histone modification, GO:0010025 - wax biosynthetic process, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0048366 - leaf development, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0004386 - helicase activity, GO:0003677 - DNA binding, GO:0016571 - histone methylation, GO:0015995 - chlorophyll biosynthetic process, GO:0007275 - multicellular organismal development, GO:0009555 - pollen development, GO:0048364 - root development, GO:0010228 - vegetative to reproductive phase transition	TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000326 - leaf color, TO:0000492 - leaf shape, TO:0002616 - flowering time, TO:0000449 - grain yield per plant, TO:0006001 - salt tolerance, TO:0000590 - grain weight, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000180 - spikelet fertility, TO:0000447 - filled grain number, TO:0000557 - secondary branch number, TO:0000396 - grain yield, TO:0000656 - root development trait, TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf, TO:0000085 - leaf rolling, TO:0000040 - panicle length, TO:0000420 - fertility related trait, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0002759 - grain number, TO:0000547 - primary branch number, TO:0000371 - yield trait, TO:0000370 - leaf width, TO:0000152 - panicle number	PO:0001007 - pollen development stage , PO:0005020 - vascular bundle , PO:0009025 - vascular leaf , PO:0004006 - mesophyll cell , PO:0007520 - root development stage , PO:0025424 - vascular tissue development stage , PO:0009015 - portion of vascular tissue , PO:0001050 - leaf development stage 
817	SLG	slg, Rurm1, Urm1, OsSUMO7, SUMO7	SLENDER GLUME	slender glume, slender-glume, rice ubiquitin-related modifier-1, ubiquitin-related modifier-1, Small ubiquitin-related modifier 7		Rurm1m, Rurm1+	7	mutator.  Slender glume frequently mutates toward wild type and frequently induces mutations in other loci. [RGN11:9] PO:0009047; stem ; PO:0009039; glume ; PO:0020142; stem internode. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. AB072932, AB072933. D23858, C74027, AU101270, AU164540. Q0D6M1. slg is the same locus as Rurm1, and the reversion of slender glume to its wild type results from the precise excision of mPing from the Rurm1m allele (Nakazaki et al. 2003).	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0466300	LOC_Os07g28280.1	GR:0060896		72.0	GO:0034227 - tRNA thio-modification, GO:0009826 - unidimensional cell growth, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000207 - plant height, TO:0000149 - seed width, TO:0000145 - internode length, TO:0000304 - seed thickness, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0025034 - leaf , PO:0009039 - glume , PO:0009047 - stem , PO:0009051 - spikelet , PO:0009005 - root , PO:0020142 - stem internode 
818	GE1	ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES, OsGE/CYP78B5, CYP78B5, OsCYP78B5	GIANT EMBRYO 1	giant embryo1, giant embryo 1, giant embryo, big grain2, Cytochrome P450 78A13, GIANT EMBRYO, super-giant embryo	CYTOCHROME P450 78A13 	ge1-1, ge1-2, ge1-3, ge1-4, ge1-5, ge1-6, ge1-s, bg2-D, ge, ge-1, ge-2, ge-3, ge-4, ge-5, ge-6, ge-7, ge-8, ge-9, ge-10, ge, ges	7	Induced by chemical mutagen treatment. Embyro size is 2-3 times as large as that of the original variety [440]. In the mature seed, the endosperm is degenerate and a giant embryo is produced due to the enlarged scutellum [708]. PO:0009009; embryo ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.  GO:2000014: regulation of endosperm development. AB780362. CYP78B5 in Chen et al. 2015.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Seed - Morphological traits - Embryo,  Biochemical character	Os07g0603700	LOC_Os07g41240.1	GR:0060362		93.0	GO:0009790 - embryonic development, GO:0010229 - inflorescence development, GO:0080113 - regulation of seed growth, GO:0009960 - endosperm development, GO:0004497 - monooxygenase activity, GO:0043467 - regulation of generation of precursor metabolites and energy, GO:0006521 - regulation of cellular amino acid metabolic process, GO:0019216 - regulation of lipid metabolic process, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009653 - anatomical structure morphogenesis	TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000391 - seed size, TO:0000113 - giant embryo, TO:0000064 - embryo related trait, TO:0000575 - endosperm related trait, TO:0000193 - embryo shape, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009009 - plant embryo , PO:0009089 - endosperm 
819	ESP1	esp1(rsp1), rsp1, esp1, OsESP1, ESP1/eRF1, eRF1, OseRF1	ENDOSPERM STORAGE PROTEIN 1	endosperm storage protein1, endosperm storage protein 1, endosperm storage protein-1, eukaryotic peptide chain release factor 1	EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR 1		7	The intensity of 13kD-b polypeptide in seed storage protein is lower than that for the original cultivar. GRO:0007045; 09-mature grain stage. GO:1990825: sequence-specific mRNA binding. GO:0002184: translation release factor activity, codon specific.	 Seed - Physiological traits - Storage substances	Os07g0587400	LOC_Os07g39870.3, LOC_Os07g39870.2, LOC_Os07g39870.1	GR:0060301		88.0	GO:0033411 - TAA codon-amino acid adaptor activity, GO:0016149 - translation release factor activity, codon specific, GO:0005829 - cytosol, GO:0006415 - translational termination, GO:0033412 - TAG codon-amino acid adaptor activity, GO:0018444 - translation release factor complex, GO:0048316 - seed development, GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait, TO:0000107 - endosperm storage protein-1 content, TO:0002653 - endosperm storage protein content	PO:0009089 - endosperm , PO:0001170 - seed development stage 
820	AMP4	Amp4	AMINOPEPTIDASE 4	Aminopeptidase4, Aminopeptidase 4, Aminopeptidase-4	AMINOPEPTIDASE 4	Amp4-0, Amp4-1, Amp4-2, Amp4-3, Amp4-4, Amp4-5, Amp4-9	8	Monomers. The allozymes do not have the same concentration or the same activity and heterozygous Amp4 individuals display two bands with the faster one being more intense.P(ST-H).	 Biochemical character			GR:0060039			GO:0004177 - aminopeptidase activity		
822	AN4	An4	AWN 4	Awn4, Awn 4, Awn-4			8	Incomplete dominance for number of awned spikelets per panicle and awn length. PO:0009049; inflorescence ; PO:0006032; awn. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060051			GO:0007275 - multicellular organismal development	TO:0000142 - secondary branching of inflorescence, TO:0000072 - awn length, TO:0000052 - primary branching of inflorescence	PO:0009049 - inflorescence , PO:0006032 - lemma awn 
823	CHL8	chl8	CHLORINA 8	chlorina8, chlorina 8, chlorina-8			8	The mutant exhibits yellowish green leaves from seedling stage to maturity. [172] PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Coloration - Chlorophyll			GR:0060125			GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
824	CHL9	chl9	CHLORINA 9	chlorina9, chlorina 9, chlorina-9			8	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060126			GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content	PO:0009025 - vascular leaf 
825	D51	d51(d K8), dwf32, dK8, d51	DWARF KYUSHU 8	dwarf Kyushu8, dwarf Kyushu 8, dwarf Kyushu-8, dwarf-51			8	PO:0009047; stem ; PO:0009049; inflorescence ; PO:0006343; axillary shoot. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Vegetative organ - Culm			GR:0060216			GO:0007275 - multicellular organismal development	TO:0000165 - panicle exsertion, TO:0000576 - stem length, TO:0000346 - tiller number	PO:0009047 - stem , PO:0006343 - axillary shoot system , PO:0009049 - inflorescence 
826	GAX	gax*, gax, ga-x, ga15	GAMETOPHYTE GENE X	gametophyte gene-x, gametophyte gene x, gametophyte gene-15, gametophyte gene 15			8		 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060357			GO:0019953 - sexual reproduction		
827	PKC2	pkc2*, pkc2	PROTEIN KINASE C HOMOLOGY 2	protein kinase C homology2, protein kinase C homology 2, protein kinase C homology-2	PROTEIN KINASE C HOMOLOG 2		8		 Biochemical character			GR:0060670			GO:0004697 - protein kinase C activity, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
828	SHR2	shr2, sh2	SHRUNKEN ENDOSPERM 2	shrunken endosperm2, shrunken endosperm 2, shrunken endosperm-2			8	Endosperm is wrinkled. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060892			GO:0009568 - amyloplast starch grain	TO:0000266 - chalky endosperm, TO:0000587 - endosperm quality, TO:0000100 - shrunken endosperm	PO:0009089 - endosperm 
829	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8	SCENTED KERNEL 2	scented kernel2, scented kernel 2, fragrance, betaine-aldehyde dehydrogenase 2, betaine aldehyde dehydrogenase 2, scented kernel-2, betaine aldehyde dehydrogenase-2, Aldehyde dehydrogenase 10A8	BETAINE-ALDEHYDE DEHYDROGENASE 2	badh2-E2, badh2-E7, badh2.1, osbadh2	8	Scent expressed in the tissue of leaf and kernel. It is located at the end of linkage group of chromosome 8, near the RFLP marker RG28. AB096083. EU770319-EU770324. FJ697177-FJ705056. JQ345686-JQ345690. JN599158, JN599159, JN599152, JN599151. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009010; seed.	 Seed - Physiological traits - Taste,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0424500	LOC_Os08g32870.1	GR:0060894			GO:0009413 - response to flooding, GO:0009651 - response to salt stress, GO:0031456 - glycine betaine biosynthetic process, GO:0009698 - phenylpropanoid metabolic process, GO:0008802 - betaine-aldehyde dehydrogenase activity, GO:0006950 - response to stress, GO:0005777 - peroxisome, GO:0009536 - plastid, GO:0009507 - chloroplast	TO:0002662 - leaf rolling tolerance, TO:0000516 - relative root length, TO:0002673 - amino acid content, TO:0000286 - submergence sensitivity, TO:0000605 - hydrogen peroxide content, TO:0006002 - proline content, TO:0000633 - relative total dry weight, TO:0000087 - aroma, TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0000003 - whole plant , PO:0009011 - plant structure 
830	TELSM1	Telsm1*, Telsm1	TELOMERES 1	Telomeres1, Telomere 1, Telomere-1			8		 Biochemical character			GR:0060953			GO:0005696 - telomere		
831	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)	THERMOSENSITIVE MALE STERILITY 1	thermosensitive male sterility1, thermosensitive male sterility 1, thermosensitive male sterility-1, male sterile-80			8	Male sterile, as a recessive character, under temperatures higher than 26.5C in the meiosis stage, but male-fertile under lower temperature. (23-25C). PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060955			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000437 - male sterility, TO:0000067 - genic male sterility-thermo sensitive	PO:0009046 - flower , PO:0009066 - anther 
832	UR2	ur2	UNDULATE RACHIS 2	undulate rachis2, undulate rachis 2, undulate rachis-2			8		 Vegetative organ - Shoot apical meristem(SAM)			GR:0060979			GO:0007275 - multicellular organismal development	TO:0000342 - panicle axis angle	
833	XA	xa(t)*, Xa(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE	Xanthomonas oryzae pv. oryzae resistance, Xanthomonas campestris pv. oryzae resistance			8	Rice bacterial blight resistance.	 Tolerance and resistance - Disease resistance			GR:0061035			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
834	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 13	Xanthomonas oryzae pv. oryzae resistance 13, Xanthomonas campestris pv. oryzae resistance-13, Xanthomonas oryzae pv. oryzae resistance-13, sugar will eventually be exported transporter 11	SUGAR TRANSPORTER SWEET11	ossweet11, ossweet11-2, ossweet11a-1, ossweet11a-2, osweet11a-3, osweet11a-4	8	Q6YZF3. DQ421394, DQ421395, DQ421396. Recessive resistant gene to Philippine isolate 6 but susceptible to isolates 1, 2, 3, 4, and 5. [RGN5:5]. a member of the NODULIN3 (N3) gene family.  host disease-susceptibility gene for bacterial blight. MtN3 gene family. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. TO:0020101: starch mobilization. GO:1904982: sucrose transmembrane transport. TO:1000022: anther morphology trait. GO:0140403: effector-mediated suppression of host innate immune response. GO:1900425: negative regulation of defense response to bacterium.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Endosperm,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0535200	LOC_Os08g42350.1	GR:0061021			GO:0010150 - leaf senescence, GO:0002237 - response to molecule of bacterial origin, GO:0009555 - pollen development, GO:0034219 - carbohydrate transmembrane transport, GO:0010431 - seed maturation, GO:0005886 - plasma membrane, GO:0015770 - sucrose transport, GO:0051119 - sugar transmembrane transporter activity, GO:0008515 - sucrose transmembrane transporter activity, GO:0009960 - endosperm development, GO:0009617 - response to bacterium, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0006825 - copper ion transport, GO:0009915 - phloem loading, GO:0006952 - defense response, GO:0005887 - integral to plasma membrane, GO:0009651 - response to salt stress, GO:0005515 - protein binding	TO:0000249 - leaf senescence, TO:0000060 - aborted uni-nucleate stage, TO:0002661 - seed maturation, TO:0000696 - starch content, TO:0000575 - endosperm related trait, TO:0000175 - bacterial blight disease resistance, TO:0000371 - yield trait, TO:0006001 - salt tolerance, TO:0000540 - leaf area, TO:0000455 - seed set percent, TO:0000421 - pollen fertility, TO:0000180 - spikelet fertility	PO:0008006 - nucellar epidermis , PO:0008007 - nucellar projection , PO:0020020 - nucellus , PO:0020128 - leaf margin , PO:0005360 - aleurone layer , PO:0007632 - seed maturation stage , PO:0009066 - anther , PO:0020137 - leaf apex , PO:0001054 - 4 leaf senescence stage 
835	Z4	z4	ZEBRA 4	zebra4, zebra 4, zebra-4			8	PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0061050			GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf, TO:0000339 - stem thickness, TO:0000061 - node shattering	PO:0009025 - vascular leaf , PO:0009047 - stem 
836	AMP2	Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2	AMINOPEPTIDASE 2	Aminopeptidase2, Aminopeptidase 2, Aminopeptidase-2	AMINOPEPTIDASE 2	Amp2-0, Amp2-1, Amp2-2, Amp2-3, Amp2-4, Amp2-5, Amp2-7	8	Monomer. S(PAGE-TC), P(ST-H). 3 bands appear in L & C(ST-H). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060037			GO:0004177 - aminopeptidase activity		
837	PI11	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11	PYRICULARIA ORYZAE RESISTANCE 11	Pyricularia oryzae resistance 11, Magnaporthe grisea resistance zh, Blast resistance 11			8	"PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Zhai-Ya-Quing8 (Indica). According to \"RGN no.11, p16\", Pi-zh was renamed Pi-11(t) ."	 Tolerance and resistance - Disease resistance			GR:0060638		30.0	GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000484 - seed shape, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
838	V8	v8	VIRESCENT 8	virescent8, virescent 8, virescent-8			8	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060987	1		GO:0015995 - chlorophyll biosynthetic process	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
839	SUG	sug(su), su, sug1, su1, su-1	SUGARY ENDOSPERM	sugary endosperm, sugary endosperm-1, sugary-1, sugary		sugary-1	8	Endosperm is wrinkled but translucent and hard [597]. The inner part of starch layer is not stained by I-KI solution, but the outer part is stained weakly [440]. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage. sugary in Nakamura et al. 1992. The starch mutant sugary contains reduced activities of isoamylase1 (ISA1) (Kawagoe et al. 2005).	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm			GR:0060948	1	115.0	GO:0009568 - amyloplast starch grain	TO:0002658 - starch grain synthesis, TO:0000196 - amylose content, TO:0000099 - sugary endosperm, TO:0000587 - endosperm quality	PO:0009089 - endosperm 
840	ADH2	Adh2*, Adh2, OsADH2	ALCOHOL DEHYDROGENASE 2	Alcohol dehydrogenase2, Alcohol dehydrogenase 2, Alcohol dehydrogenase-2	ALCOHOL DEHYDROGENASE 2		11	Dimer. P & C(ST-H). EC=1.1.1.1 Q4R1E8(indica). Q0ITW7(japonica). AF148602-AF148632 (O.stiva and other wild rice species). M36469. X16297. AB208516-AB208542 (Oryza rufipogon and other rice species). AY169483-AY169492 (wild rice species). FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0210500	LOC_Os11g10510.2, LOC_Os11g10510.1	GR:0060012			GO:0018468 - alcohol dehydrogenase (acceptor) activity, GO:0009413 - response to flooding, GO:0009723 - response to ethylene stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0055114 - oxidation reduction, GO:0001666 - response to hypoxia, GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0004022 - alcohol dehydrogenase (NAD) activity	TO:0000114 - flooding related trait, TO:0000173 - ethylene sensitivity	
842	ATUB	atub*, atub	ALPHA TUBULIN	Alpha tubulin, alpha tubulin	ALPHA TUBULIN		9		 Biochemical character			GR:0060064			GO:0045298 - tubulin complex, GO:0006457 - protein folding		
843	BPH	Bph(t)*, Bph11	BROWN PLANTHOPPER RESISTANCE	brown planthopper resistance, Brown planthopper resistance, Brown planthopper resistance-11			9	PO:0009005; root.	 Tolerance and resistance - Insect resistance			GR:0060099			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
844	CHS1	chs1(t)*, chs1	CHLOROSIS CAUSED BY LOW TEMPERATURE 1	chlorosis caused by low temperature1, chlorosis caused by low temperature 1, chlorosis caused by low temperature-1		chs1-A, chs1-B, chs1-C	9	chlorosis caused by low temperature (17C). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060129			GO:0015995 - chlorophyll biosynthetic process, GO:0009409 - response to cold, GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
845	CYC1	cyc1*, cyc1	CYCLOPHILIN 1	cyclophilin1, cyclophilin 1, cyclophilin-1	CYCLOPHILIN 1		9		 Biochemical character			GR:0060180			GO:0004600 - cyclophilin, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0016018 - cyclosporin A binding		
846	D57	d57[d(x)], dwf38, d(x), d57	DWARF	dwarf, dwarf-57			9	PO:0009047; stem ; PO:0000003; whole plant ; PO:0009010; seed ; PO:0005005; shoot internode. 	 Vegetative organ - Culm			GR:0060222			GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000432 - temperature response trait, TO:0000391 - seed size, TO:0000576 - stem length, TO:0000132 - basal internode diameter	PO:0005005 - shoot internode , PO:0009047 - stem , PO:0000003 - whole plant , PO:0009010 - seed 
847	DP	dp(t)*, dp3, dp	DEPRESSED PALEA	depressed palea, depressed palea-3			9	PO:0009038; palea ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060240			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000436 - spikelet sterility, TO:0000484 - seed shape	PO:0009038 - palea , PO:0009010 - seed , PO:0009082 - spikelet floret 
848	DU2120	du2120*, du10, du2120	DULL ENDOSPERM 2120	dull endosperm(2120), dull endoaperm (2120), dull endosperm-10			9	PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060270			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0009089 - endosperm 
849	EST12	Est12	ESTERASE 12	Esterase12, Esterase 12, Esterase-12	ESTERASE 12	Est12-0, Est12-1	9	Monomers. S & P(PAGE-TBE). The band migrates faster than that of Est11 and slower than that of Est3. Active in the yellow part of the plumule. Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060316			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
850	EST3	Est3	ESTERASE 3	Esterase3, Esterase 3, Esterase-3	ESTERASE 3	Est3-1 (Est3-S), Est3-2 (Est3-F)	9	Monomer. Red band. L(PAGE-TBE,AG). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060307			GO:0016787 - hydrolase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
851	GLUP1	Glup1(Esp5, Gup1), Gup1, Esp5, Glup1	GLUTELIN PRECURSOR 1	Glutelin precursor1, Glutelin precursor 1, Glutelin precursor-1	GLUTELIN PRECURSOR 1		9	High content of 57kDa polypeptide (glutelin precursor polypeptide) with low content of 40kDa and 20kDa polypeptides. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060411			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait, TO:0000109 - endosperm storage protein-2 content	PO:0009089 - endosperm 
852	GLUP2	glup2(esp6, gup2), esp6, gup2, glup2	GLUTELIN PRECURSOR 2	glutelin precursor2, glutelin precursor 2, glutelin precursor-2	GLUTELIN PRECURSOR 2		9	High content of 57kDa polypeptide (glutelin precursor polypeptide) with low content of 40kDa and 20k polypeptides. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060412			GO:0045735 - nutrient reservoir activity	TO:0000109 - endosperm storage protein-2 content, TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
853	GLUP5	Glup5(t)*, Glup5(t), Glup5	GLUTELIN PRECURSOR 5	Glutelin precursor5, Glutelin precursor 5, Glutelin precursor-5	GLUTELIN PRECURSOR 5		9	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060415			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
854	GM	gm1, gm2(pd), pd, gm13	GALL MIDGE RESISTANCE 	gall midge resistance, gall midge resistance-13			9	duplicate. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060424			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
855	HSP2*	hsp2*, hsp2	HEAT SHOCK PROTEIN2	heat shock protein2, heat shock protein 2, heat shock protein-2	HEAT SHOCK PROTEIN2		9	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance,  Biochemical character			GR:0060453			GO:0042026 - protein refolding, GO:0003773 - heat shock protein activity	TO:0000432 - temperature response trait, TO:0000259 - heat tolerance	PO:0009011 - plant structure , PO:0000003 - whole plant 
856	HSP4*	hsp4*, hsp4	HEAT SHOCK PROTEIN4	heat shock protein4, heat shock protein 4, heat shock protein-4	HEAT SHOCK PROTEIN4		9	PO:0009011; plant structure ; PO:0000003; whole plant.	 Biochemical character,  Tolerance and resistance - Stress tolerance			GR:0060454			GO:0042026 - protein refolding, GO:0003773 - heat shock protein activity	TO:0000259 - heat tolerance, TO:0000432 - temperature response trait	PO:0009011 - plant structure , PO:0000003 - whole plant 
857	MAN	Man	MANNAN IN ENDOSPERM CELL WALL	Mannan in endosperm cell wall			9	Accumulation of mannan (glucomannan) in endosperm cell wall. PO:0009011; plant structure ; PO:0000003; whole plant.	 Seed - Physiological traits - Storage substances			GR:0060519			GO:0006080 - substituted mannan metabolic process	TO:0000489 - carbohydrate composition related trait	PO:0009011 - plant structure , PO:0000003 - whole plant 
858	MS10	ms10	MALE STERILE 10	male sterile10, male sterile 10, male sterile-10			9	PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060547			GO:0007275 - multicellular organismal development	TO:0000199 - genic male sterility, TO:0000437 - male sterility	PO:0009066 - anther 
859	PKC1	pkc1*, pkc1	PROTEIN KINASE C HOMOLOGY 1	protein kinase C homology1, protein kinase C homology 1, protein kinase C homology-1	PROTEIN KINASE C HOMOLOG 1		9		 Biochemical character			GR:0060669			GO:0004697 - protein kinase C activity, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
860	R45S1	R45s1*(rDNA1), rDNA1, r45s, R45s1	45S RIBOSOMAL DNA 1	45S ribosomal DNA1, 45S ribosomal DNA 1, 45S ribosomal DNA-1			9		 Biochemical character			GR:0060715			GO:0000182 - rDNA binding, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
861	R5S3	R5s3*, R5s3	5S RIBOSOMAL DNA 3	5S ribosomal DNA3, 5S ribosomal DNA 3, 5S ribosomal DNA-3			9		 Biochemical character			GR:0060714			GO:0005840 - ribosome, GO:0006412 - translation, GO:0000182 - rDNA binding, GO:0003735 - structural constituent of ribosome		
862	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9	SPREADING STUB	Spreading stub, Tiller angle control 1		spk(t), tac1	9	AB365455. AP005682.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os09g0529300 	LOC_Os09g35980.1, LOC_Os09g35980.2	GR:0060901			GO:0007275 - multicellular organismal development	TO:0000346 - tiller number, TO:0000447 - filled grain number, TO:0000396 - grain yield, TO:0000567 - tiller angle, TO:0000427 - culm angle	PO:0009047 - stem 
863	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1	SUBMERGENCE TOLERANCE 1	Submergence tolerance1, Submergence tolerance 1, Submergence tolerance-1			9	Tolerance to submergence for 10-20 days.[797] DQ011598, DQ011604, DQ011607. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060943			GO:0003677 - DNA binding, GO:0009413 - response to flooding	TO:0000103 - deepwater stress, TO:0000286 - submergence sensitivity, TO:0000207 - plant height	PO:0009011 - plant structure , PO:0000003 - whole plant 
864	TELSA1	Telsa1*, Telsa1	TELOMERES	Telomeres, Telomere			9		 Biochemical character			GR:0060952			GO:0005696 - telomere		
865	IBF	IBf	INHIBITOR FOR BROWN FURROWS	Inhibitor for brown furrows			9	This inhibits the expression of Bf, glumes becoming usual straw color. PO:0009047; stem ; PO:0009039; glume ; PO:0009088; seed coat. GRO:0007045; 09-mature grain stage.	 Coloration - Others			GR:0060466				TO:0000056 - stem color, TO:0000264 - lemma and palea color	PO:0009039 - glume , PO:0009088 - seed coat , PO:0009047 - stem 
866	LAM	lam(t), lam	LOW AMYLOSE ENDOSPERM	low amylose endosperm, low allergenic protein			9	Low amylose content in translucent grain. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060492			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000098 - glutinous endosperm, TO:0000196 - amylose content, TO:0000266 - chalky endosperm	PO:0009089 - endosperm 
867	DN1	Dn1	DENSE PANICLE 1	Dense panicle1, Dense panicle 1, Dense panicle-1			9	PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060235		45.0	GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000040 - panicle length, TO:0000142 - secondary branching of inflorescence	PO:0009049 - inflorescence 
868	DP2	dp2	DEPRESSED PALEA 2	depressed palea2, depressed palea 2, depressed palea-2			9	The palea is undergrown so that the spikelet becomes crescent shape and the kernel shape and size also abnormal.[129] PO:0009038; palea ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060239		45.0	GO:0007275 - multicellular organismal development	TO:0000499 - flower anatomy and morphology trait, TO:0000484 - seed shape, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009038 - palea , PO:0009010 - seed , PO:0009082 - spikelet floret 
869	DRP2	drp2	DRIPPING-WET LEAF 2	dripping-wet leaf2, dripping-wet leaf 2, dripping-wet leaf-2			9	Entire leaf surface appears wet as it is quite hydrophile and does not shed water. This mutant has poor viability. [129] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Vegetative organ - Leaf			GR:0060242		51.0	GO:0006633 - fatty acid biosynthetic process	TO:0000493 - leaf composition trait	PO:0009025 - vascular leaf 
870	BP	Bp	BURLUSH-LIKE PANICLE	Burlush-like panicle			9	Dense panicle due to short and undulate lachis and depressed palea. PO:0009049; inflorescence. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Inflorescence			GR:0060088		63.0	GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000089 - panicle type	PO:0009049 - inflorescence 
871	BPH3	Bph3	BROWN PLANTHOPPER RESISTANCE 3	brown planthopper resistance 3, Brown planthopper resistance-3			6	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. The Bph3 locus was localized to approximately 190 kb interval flanked by markers RM19291 and RM8072 (Jairin et al. 2007).	 Tolerance and resistance - Insect resistance			GR:0060091			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
872	BPH4	bph4	BROWN PLANTHOPPER RESISTANCE 4	brown planthopper resistance 4, brown planthopper resistance-4			6	PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Insect resistance			GR:0060092			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
873	DU1	du1	DULL ENDOSPERM 1	dull endosperm1, dull endosperm 1, dull endosperm-1		du-1	10	Endosperm is inbetween waxy and translucent. Unlike the floury character, the dull character is expressed only when the grains are completely dry.[20356] Lowers the amylose content in endosperm. I-KI reaction is dark blue. low amylose content mutant. PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0020039; leaf lamina ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009089; endosperm. GRO:0007151; 6.1-flowering stage ; GRO:0007045; 09-mature grain stage.  a pre-mRNA processing (Prp1) family protein.	 Seed - Physiological traits - Storage substances	Os10g0498600	LOC_Os10g35550.1	GR:0060261			GO:0005622 - intracellular, GO:0019252 - starch biosynthetic process, GO:0009568 - amyloplast starch grain, GO:0006396 - RNA processing, GO:0005976 - polysaccharide metabolic process	TO:0000105 - dull endosperm, TO:0000196 - amylose content	PO:0020039 - leaf lamina , PO:0009089 - endosperm , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath 
874	EF	Ef(t)*, ef(t)*, Ef, ef	EARLINESS INTRODUCED FROM ORYZA AUSTRALIENSIS	Earliness introduced from Oryza australiensis, earliness introduced from Oryza australiensis or O. glaberrima			10	PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060284			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading, TO:0000469 - days to maturity, TO:0000229 - photoperiod sensitivity	PO:0009049 - inflorescence , PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0009013 - portion of meristem tissue 
875	GCW2	gcw2*, gcw2	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 2	glycin-rich cell wall structual protein2, glycin-rich cell wall structual protein 2, glycin-rich cell wall structual protein-2	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 2		10		 Biochemical character			GR:0060359			GO:0005199 - structural constituent of cell wall		
876	GCW4	gcw4*	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 4	glycin-rich cell wall structual protein4, glycin-rich cell wall structual protein 4, glycin-rich cell wall structual protein-4	GLYCIN-RICH CELL WALL STRUCTUAL PROTEIN 4		10		 Biochemical character			GR:0060360			GO:0005199 - structural constituent of cell wall		
877	GLH3	Glh3	GREEN LEAFHOPPER RESISTANCE 3	Green leafhopper resistance3, Green leafhopper resistance 3, Green leafhopper resistance-3			10	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060378			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
878	GLU2	glu2(t)*, glu9, LGLU2	GLUTELIN 2	lack of glutelin subunit2, lack of glutelin subunit 2, lack of glutelin subunit-2, rice glutelin-9	GLUTELIN 2		10	The asidic subunits of glutelin appear as several sopts in two-dimensional electrophoresis. glu2 is deficient in spot 2a. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060391			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
879	HWD1	hwd1	HYBRID WEAKNESS D1	hybrid weakness d1, hybrid weakness-d1			10	Weakness occurs in F2 from varietal crosses having complementary gene hwd2. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060461			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000355 - heterosis, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
880	R45S2	R45s2*(rDNA2), rDNA2, R45s2	45S RIBOSOMAL DNA 2	45s ribosomal DNA2, 45s ribosomal DNA 2, 45S ribosomal DNA-2			10		 Biochemical character			GR:0060716			GO:0000182 - rDNA binding, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
881	RK2	rk2	ROUND KERNEL 2	round kernel2, round kernel 2, round kernel-2			10	Shorter and wider kernels compared with normal ones.[132] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060762		36.0		TO:0000287 - brown rice shape, TO:0000149 - seed width, TO:0000391 - seed size	PO:0009010 - seed 
882	YGL	ygl*, ygl	YELLOW GREEN LEAF	yellow green leaf			10	This chlorophyll mutant exhibits yellow-green leaves at all stages of growth. [228] PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stag.	 Coloration - Chlorophyll			GR:0061041			GO:0015994 - chlorophyll metabolic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
883	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22	EARLINESS 1	Earliness1, Earliness 1, Earliness-1, EARLY HEADING DATE 1, Early heading date1	TWO-COMPONENT RESPONSE REGULATOR EHD1 	Ef1-a, Ef1-b, Ef1-gamma, Ef1-x, Ef1-n, ef1-h, ehd1, Ehd1-Nip, Ehd1-gla, ehd1-11	10	This gene controls basic vegetative growth period. Ef1-n which is one of the multiple alleles at Ef1 locus accelerates the heading day by 20 days earlier than the original line T65. AB092506 Dominant alleles of Ehd1 confer short-day promotion of heading. Taichung 65, a Japonica variety, possesses a recessive allele. Ehd1 encodes a B-type response regulator. Dominant allele from O. glaberrima (IRGC104038) causes early heading. O. glaberrima(IRGC104038). Ehd1 occupies the same locus as Ef1. B-type RR. B-TYPE RR. Q7Y0W5. PO:0009049; inflorescence. Ehd1 occupies the same locus as EF1. PO:0006318; floret (sensu Poaceae). GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. JN594327-JN594403 (O.sativa and other wild rice species). JN402157-JN402177 (O.sativa and other wild rice species). KC609243-KC610817 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os10g0463400	LOC_Os10g32600.1	GR:0060278			GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0000156 - two-component response regulator activity, GO:0005634 - nucleus, GO:0009908 - flower development, GO:0000160 - two-component signal transduction system (phosphorelay), GO:2000028 - regulation of photoperiodism, flowering, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000447 - filled grain number, TO:0000137 - days to heading, TO:0000371 - yield trait, TO:0006032 - panicle size, TO:0000050 - inflorescence branching, TO:0002759 - grain number, TO:0000469 - days to maturity	PO:0009082 - spikelet floret , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009013 - portion of meristem tissue 
884	FGL	fgl(fl), fl, fgl, OsFGL, OsPorB, PoPA, PORA, porA, OsPORA, PORB, OsPORB	FADED GREEN LEAF	faded green leaf, NADPH: protochlorophyllide oxidoreductase B, NADPH-dependent protochlorophyllide oxidoreductase A		fgl, osporB, fgl/osporB	10	Q8W3D9 . Whitish yellow margin of leaves in the seedling stage and faded green leaves after the tillering stage. [131] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. PoPA in Chen et al. 2013, Deng et al. 2014, Qiu et al. 2018, Huang et al. 2020, Liu et al. 2022. PORB in Inagaki et al. 2015, Yang et al. 2015  and Kong et al. 2016, Jin et al. 2021, Xu et al. 2022.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Lesion mimic,  Biochemical character	Os10g0496900	LOC_Os10g35370.2, LOC_Os10g35370.1	GR:0060329		16.0	GO:0016630 - protochlorophyllide reductase activity, GO:0015995 - chlorophyll biosynthetic process, GO:0000166 - nucleotide binding, GO:0009416 - response to light stimulus, GO:0015979 - photosynthesis, GO:0009507 - chloroplast, GO:0007623 - circadian rhythm, GO:0048366 - leaf development, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000075 - light sensitivity, TO:0000496 - carotenoid content, TO:0000298 - chlorophyll ratio, TO:0000655 - leaf development trait, TO:0000326 - leaf color, TO:0000063 - mimic response, TO:0000299 - leaf lamina color	PO:0001050 - leaf development stage , PO:0009025 - vascular leaf 
885	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PLS31, OsPLS31	RESTORATION OF FERTILITY 1	"Pollen fertility restoration1, Pollen fertility restoration-1, \"Rf1 protein, mitochondrial precursor\", \"Rf1 protein, mitochondrial\", \"Protein Rf1, mitochondrial\", fertility restorer 5, Pentatricopeptide Repeat Protein RF5, pentatricopeptide repeat protein 791, Fertile revertant from II-32A, Pollen fertility restoration-5, RESTORATION OF FERTILITY 5, RESTORATION OF FERTILITY 1A, pentatricopeptide repeat motif containing gene 6, PPR motif-containing gene 6, PLS-class Pentatricopeptide Repeat Protein 31, PLS-type PPR protein 31"	RF1 PROTEIN	Rf1-a, Rf1-b, Rf1-c, Rf1-d, Rf1-e, rf-1	10	Pollen fertility restoration gene of BT-type cytoplasmic male sterility, being located on chromosome 10 between RFLP markers fL601 and C1361. AB179840. AB110443, AB110444. Q76C99. AB470406, AB470408. PO:0009066; anther. a 791-aa protein containing 16 PPR motifs. WA type CMS. Rf5 is identical to Rf1 (Rf1a) in BTCMS rice (Hu et al. 2012). DQ311052, DQ311053. (Os10g0497450 in Ncbi and UniProt). a subunit of the restoration of fertility complex (RFC).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os10g0497432 	LOC_Os10g35440.1	GR:0060740,GR:0060744		16.5	GO:0007275 - multicellular organismal development, GO:0005739 - mitochondrion, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000498 - female fertility restoration trait, TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
886	SPL10	spl10	SPOTTED LEAF 10	spotted leaf10, spotted leaf 10, spotted leaf-10			10	Yellow or brown spots on leaves. [RGN10:8] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Tolerance and resistance - Lesion mimic			GR:0060911		20.5	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
887	PGL	pgl	PALE GREEN LEAF	pale green leaf			10	Pale green leaves appear much clearly in the stage from transplanting to heading. [131] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. 	 Coloration - Chlorophyll			GR:0060605		28.5	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000299 - leaf lamina color	PO:0009025 - vascular leaf 
889	CHS	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26, OsCHS24, CHS24, OsCHS27, CHS27	CHALCONE SYNTHASE	Chalcone synthase, Naregenin-chalcone synthase, chalcone synthase, chalcone synthase 1, polyketide synthase 26, Chalcone synthase 24	CHALCONE SYNTHASE	oschs24	11	EC=2.3.1.74 A2ZEX7(indica). Q2R3A1(japonica). AB000801. X89859. D29697. OsCHS1 in Hayashi et al. 2014 and Oikawa et al. 2015, Chen et al. 2018. OsCHS24 in Park et al. 2020. PO:0030123: panicle inflorescence. TO:0001109: grain color trait. OsCHS27 in Wang et al. 2022. GO:0102128: chalcone synthase activity.	 Tolerance and resistance,  Seed - Morphological traits,  Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os11g0530600	LOC_Os11g32650.1	GR:0060128			GO:0009813 - flavonoid biosynthetic process, GO:0051555 - flavonol biosynthetic process, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0051553 - flavone biosynthetic process, GO:0010224 - response to UV-B, GO:0008415 - acyltransferase activity, GO:0010332 - response to gamma radiation, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016210 - naringenin-chalcone synthase activity, GO:0048316 - seed development, GO:0009814 - defense response, incompatible interaction, GO:0009411 - response to UV, GO:0009718 - anthocyanin biosynthetic process, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0030639 - polyketide biosynthetic process	TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000424 - brown planthopper resistance, TO:0000071 - anthocyanin content, TO:0000172 - jasmonic acid sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000707 - pericarp color, TO:0000653 - seed development trait, TO:0000290 - flavonoid content, TO:0000259 - heat tolerance	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009006 - shoot system , PO:0001170 - seed development stage , PO:0009047 - stem 
890	D2	D2*, Db, Dhl2	DOMINANT LETHAL2 FROM O. SATIVA	Dominant lethal2 from O. sativa, Dominant hybrid lethal-2			11	Dominant lethat gene obtained from O. sativa. PO:0009009; embryo ; PO:0006457; ovule (sensu Poaceae) ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060183			GO:0009653 - anatomical structure morphogenesis, GO:0007275 - multicellular organismal development, GO:0009790 - embryonic development	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0020003 - plant ovule 
891	DSE	Dse*, Dse	DIAMETER OF SEMINAL ROOT	Diameter of seminal root			11	This gene controls the thickness of seminal root, the thickness being dominant over the slenderness. PO:0009005; root.	 Vegetative organ - Root			GR:0060260			GO:0007275 - multicellular organismal development	TO:0000306 - root thickness	PO:0009005 - root 
892	ESP3	esp3(rsp3), rsp3, esp3	ENDOSPERM STORAGE PROTEIN 3	endosperm storage protein3, endosperm storage protein 3, endosperm storage protein-3	ENDOSPERM STORAGE PROTEIN 3		11	The intensities of 10kD and 13a polypeptide in seed storage protein are lower that those for the original cultivar. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060303			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
893	FDP1	Fdp1*, Fdp1	FRUCTOSE1,6-DIPHOSPHATASE 1	"\"Fructose1, 6-diphosphatase1\", \"Fructose1, 6-diphosphatase 1\", \"Fructose-1, 6-diphosphatase-1\""	FRUCTOSE1,6-DIPHOSPHATASE 1	Fdp1-0, Fdp1-1, Fdp1-2	11	Dimer. P(ST,PAGE-TC).	 Biochemical character			GR:0060324			GO:0006000 - fructose metabolic process, GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity		
894	GAL	gal(lt), It-m, lt, gal	GAMETIC LETHAL	gametic lethal			11	Lethality both for male and female gametes in coexistence with d60. [RGN9:3]	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0060358			GO:0007275 - multicellular organismal development		
895	GRHB	Grhb(t)*, Grhb, Grh4	GREEN RICE LEAFHOPPER RESISTANCE B	Green rice leafhopper resistance B, Green rice leafhopper resistance-4			11	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060435			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
896	LK2	Lk2(t) (Lknb), Lknb, Lk2	NAGAYAMA 77402B LONG GRAIN 2	Nagayama 77402b long grain2, 'Nagayama 77402b (N182)' long grain, Long kernel-2			11	Long grain with low seed setting and reduced spikelet number. [781] PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Morphological traits - Grain shape			GR:0060504			GO:0007275 - multicellular organismal development	TO:0000146 - seed length	PO:0009010 - seed 
897	MIK	mi k, mik, mi2	MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT	'Kitaake mutant' minute grain, minute grain-2			11	Small grain and late heading. [RGN11:11] PO:0009049; inflorescence ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. RO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Grain shape			GR:0060526			GO:0032196 - transposition, GO:0003700 - transcription factor activity	TO:0000181 - seed weight, TO:0000137 - days to heading, TO:0000089 - panicle type, TO:0000146 - seed length, TO:0000391 - seed size, TO:0000436 - spikelet sterility	PO:0009082 - spikelet floret , PO:0009049 - inflorescence , PO:0009010 - seed 
898	MPI	MPi z(Rb6), Rb6, MPiz	MODIFIER FOR BLAST RESISTANCE	Modifier for blast resistance gene Pi z, Modifier for blast resistance (Piz)			11	Modifier for blast resistance gene Pi z. PO:0009025; leaf. Original line is Zenith (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060533			GO:0009620 - response to fungus	TO:0000522 - stomatal conductance, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000074 - blast disease	PO:0009025 - vascular leaf 
899	NAL2	nal2, nal3, cul2, OsWOX3A, WOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS	NARROW LEAF 2	narrow leaf2, narrow leaf 2, narrow leaf-2, curl leaf-2, WUSCHEL related homeobox 3A, WUSCHEL-related homeobox 3A	WUSCHEL-LIKE HOMEOBOX 3A 	nal2, oswox3a	11	Forming duplicate or triplicate genes with nl1 and/or nl3, this gene expresses a narrow leaf. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage. NAL2 on chromosomes 11 and NAL3 on chromosome 12 encode an identical OsWOX3A/OsNS protein that is homologous to NS of maize and PRS of Arabidopsis (Cho et al. 2013). Q33DK1, A2ZH47. AM490243. AM234748. OsWOX3 in Dai et al. 2007. OsNS1/OsNS2 and OsWOX3 (corredponding to Os11g0102100/Os12g0101600) in Cheng et al. 2014. TO:0000784: inflorescence branch anatomy and morphology trait. AB218893.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Vegetative organ - Root,  Reproductive organ - Panicle, Mode of branching	Os11g0102100	LOC_Os11g01130.1, LOC_Os11g01130.2	GR:0060566			GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0043565 - sequence-specific DNA binding, GO:0009740 - gibberellic acid mediated signaling, GO:0009734 - auxin mediated signaling pathway, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0010336 - gibberellic acid homeostasis, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0007275 - multicellular organismal development	TO:0000346 - tiller number, TO:0000656 - root development trait, TO:0000492 - leaf shape, TO:0000370 - leaf width, TO:0000402 - grain width, TO:0000657 - spikelet anatomy and morphology trait, TO:0001013 - lateral root number, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0002675 - gibberellic acid content	PO:0007520 - root development stage , PO:0009025 - vascular leaf 
900	PBR*	PBR*	PANICLE BLAST RESISTANCE	Panicle blast resistance			11	Resistant to the panicle blast disease. Original line is St No.1 (Japonica/Indica). Map position (80.5-120.3 cM).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000477 - panicle blast disease resistance	
901	PBST*	Pbst*	PANICLE BLAST RESISTANCE	Panicle blast resistance			11		 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000477 - panicle blast disease resistance	
902	PIF	Pi f, PIF, Pif, RMg3, Pi-f	PYRICULARIA ORYZAE RESISTANCE-F	Pyricularia oryzae resistance-f, Magnaporthe grisea resistance-f, Blast resistance f			11	PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Original line is Chugoku 31-1 (St. No.1) (J).	 Tolerance and resistance - Disease resistance			GR:0060614			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000509 - leaf blast disease resistance	PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020141 - stem node 
903	PIIS1	Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1	PYRICULARIA ORYZAE RESISTANCE IS-1	Pyricularia oryzae resistance-is-1, Magnaporthe grisea resistance-is1, Blast resistance is1			11	cumulative. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Imochi shirazu (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060617			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000511 - phosphorus uptake, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
904	PIKUR2	Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2	PYRICULARIA ORYZAE RESISTANCE-KUR-2	Pyricularia oryzae resistance-kur-2, Magnaporthe grisea resistance-kur2, Blast resistance kur2			11	Field resistant gene to rice blast found in cv. 'Kuroka'. Additive with Pi kur1. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060621			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000515 - relative growth rate, TO:0000477 - panicle blast disease resistance	PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0009025 - vascular leaf 
905	PISE1	Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1	PYRICULARIA ORYZAE RESISTANCE SE 1	Pyricularia oryzae resistance-se-1, Magnaporthe grisea resistance-se1, Blast resistance se1			11	additive. The independent genes Rb1, Rb2 and Rb3 acted additively to control resistance to blast fungus (Goto 1970). PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance			GR:0060622			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000516 - relative root length, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
906	PI30	Pi-30(t), Pi30(t)	PYRICULARIA ORYZAE RESISTANCE 30	Magnaporthe grisea resistance 30, Blast resistance 30			11	Original line is IR64(Indica). Map position (59.4-60.4). Pi-30(t) may correspond to the Pi-a (Sallaud et al. 2003).	 Tolerance and resistance - Disease resistance			GR:0060630			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000482 - chemical stress sensitivity, TO:0000468 - leaf blast disease resistance	
907	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18	PYRICULARIA ORYZAE RESISTANCE 18	Pyricularia oryzae resistance 18, Magnaporthe grisea resistance-18, Blast resistance 18			11	Resistant to the race KI-313 of Pyricularia grisea isolated in Korea. [RGN14:10]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Suweon365 (Japonica).	 Tolerance and resistance - Disease resistance			GR:0060647		117.9	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000493 - leaf composition trait, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
908	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C	PYRICULARIA ORYZAE RESISTANCE 1	Pyricularia oryzae resistance 1, Magnaporthe grisea resistance-1, Blast resistance 1		pi1-1, pi1-2	11	resistant to several races of Pyricularia grisea. [RGN12:19]. PO:0009025; leaf. GRO:0007047; 02-seedling. Original line is LAC23 (Japonica). Map position (112.1-117.9 cM).  Pi1 is an allele at the Pik locus. Like other alleles at this locus, Pi1 consists of two genes: Pi1-5C and Pi1-6C (Hua et al. 2012). HQ606329.	 Tolerance and resistance - Disease resistance			GR:0060634			GO:0006952 - defense response, GO:0017111 - nucleoside-triphosphatase activity, GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0005524 - ATP binding	TO:0000468 - leaf blast disease resistance, TO:0000504 - leaf temperature, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
909	R45S3	R45s3*, R45s3	45S RIBOSOMAL DNA 3	45s ribosomal DNA3, 45s ribosomal DNA 3, 45S ribosomal DNA-3			11		 Biochemical character			GR:0060717			GO:0000182 - rDNA binding, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
910	R5S1	R5s1*, r5s, R5s1	5S RIBOSOMAL DNA 1	5S ribosomal DNA1 (5S rRNA-1), 5S ribosomal DNA-1(5S rRNA-1), 5S ribosomal DNA-1, 5S rRNA-1, 5S ribosomal RNA, 5S rRNA, 5S rDNA			11	D26370. M18171. Z11475. Z11411-Z11414, Z11469-Z11474 (wild rice species). EF197121-EF197133, EU439271-EU439291 (indica and other wild rice species).	 Biochemical character			GR:0060712			GO:0000182 - rDNA binding, GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
911	S11	S11(t)	HYBRID STERILITY 11	Hybrid sterility11, Hybrid sterility 11, Hybrid sterility-11			11	Gametic eliminator due to an allelic interaction.  Original line: PTB10, indica type variety. [RGN11:8] PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060818			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009046 - flower 
912	S3		HYBRID STERILITY 3	Hybrid sterility3, Hybrid sterility 3, Hybrid sterility-3		S3-a .	11	Sporogametophytic interaction. pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060810			GO:0007275 - multicellular organismal development	TO:0000437 - male sterility, TO:0000218 - pollen abortion type, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
913	STVB	Stvb(St2), St2, Stvb, Stv2	STRIPE DISEASE RESISTANCE B	Stripe disease resistance, Stripe disease resistance-b, Stripe disease resistance-2, STRIPE DISEASE RESISTANCE		Stvb-i, Stvb-j	11	PO:0009011; plant structure ; PO:0000003; whole plant. TO:0006060: leaf chlorosis. TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0514000	LOC_Os11g31480.1	GR:0060939			GO:0009408 - response to heat, GO:0009615 - response to virus	TO:0000446 - leaf drying, TO:0000148 - viral disease resistance, TO:0002688 - leaf lamina joint bending, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000259 - heat tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
914	TELSM3	Telsm3*, Telsm3	TELOMERES 3	Telomeres3, Telomere 3, Telomere-3			11		 Biochemical character			GR:0060954			GO:0005696 - telomere		
915	XA A*	Xa a*, XAA, Xaa*, Xaa	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE A	Xanthomonas oryzae pv. oryzae resistance-a, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE A, Xanthomonas campestris pv. oryzae resistance-a			11		 Tolerance and resistance - Disease resistance			GR:0061032			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
916	XA H*	Xa h*, XAH, Xah*, Xah	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE H	Xanthomonas oryzae pv. oryzae resistance-h, XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE H, Xanthomonas campestris pv. oryzae resistance-h			11		 Tolerance and resistance - Disease resistance			GR:0061034			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
917	XA	xa(t)*	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE	Xanthomonas oryzae pv. oryzae resistance			11	Rice bacterial blight resistance.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
918	XA10	Xa10, Xa-10	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 10	Xanthomonas oryzae pv. oryzae resistance 10, Xanthomonas campestris pv. oryzae resistance-10, Xanthomonas oryzae pv. oryzae resistance-10			11	JX025645 (Indica Xa10 gene). the target of AvrXa10 (an avirulence effector of Xanthomonas oryzae pv. oryzae).	 Tolerance and resistance - Disease resistance			GR:0061018			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
919	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 3	Xanthomonas oryzae pv. oryzae resistance 3, Xanthomonas campestris pv. oryzae resistance-3, Xanthomonas oryzae pv. oryzae resistance-3, Xanthomonas oryzae pv. oryzae resistance 26			11	Resistant to the all Japanese Isolate groups in adult only. [366]. This gene is located on chromosome 11 and tightly linked with Xa4. PO:0009011; plant structure ; PO:0000003; whole plant. AY364476 (replaced by DQ355952). DQ355952, DQ355953. DQ426645, DQ426646, DQ426647. OoRKb1 (O. officinalis), OmRKb1 (O. minuta).  wild rice orthologs: OoRKb1 (Xa3/Xa26-2) in O. officinalis (HQ148674), OmRKb1 (Xa3/Xa26-3) in O. minuta (HQ148675). leucine-rich repeat (LRR) receptor kinase-like protein. The second candidate was Xa26 (LOC_Os11g47210), which encodes a receptor kinase-like protein  (Zhang et al. 2021).	 Tolerance and resistance - Disease resistance	Os11g0694850	LOC_Os11g47210.1	GR:0061013,GR:0061358			GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
920	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 4	Xanthomonas oryzae pv. oryzae resistance 4, Xanthomonas campestris pv. oryzae resistance-4, Xanthomonas oryzae pv. oryzae resistance-4			11	Resistant to the Philippine isolate Pxo25.  [368]. a cell wall-associated kinase.  KU761305 (Xa4 in rice line IRBB4), KU761306 (xa4 in rice variety IR24), KU761307 (Xa4 in rice variety IR64), KU761308 (Xa4 in rice variety Teqing), KU761309 (xa4 in rice variety Minghui 63), KU761310 (xa4 in rice variety Zhenshan 97), KU761311 (xa4 in rice variety Mudanjinag 8), KU761312 (xa4 in rice variety Zhonghua 11), and KU761313 (xa4 in rice variety Nipponbare). GO:2001008: positive regulation of cellulose biosynthetic process.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance			GR:0061014			GO:0052324 - cell wall cellulose biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0009828 - plant-type cell wall loosening, GO:0009689 - induction of phytoalexin biosynthetic process	TO:0002668 - jasmonic acid content, TO:0000175 - bacterial blight disease resistance, TO:0000051 - stem strength, TO:0000207 - plant height	
921	D53	D53(D K3), DK3, Dwf34, SMXL6/7/8, OsD53	DWARF KYUSHU 3	Dwarf Kyushu3, Dwarf Kyushu 3, Dwarf Kyushu-3, dwarf-53, DWARF 53, DWARF53, SUPPRESSOR OF MAX2-LIKE6/7/8	SUBSTRATE OF SCF-D3 UBIQUITINATION COMPLEX	d53, d53-1D	11	Dominant dwarf gene with many tillers. PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf.  a repressor of strigolactone signalling. a substrate of the SCFD3 ubiquitination complex. GO:1902347: response to strigolactone.	 Vegetative organ - Culm	Os11g0104300	LOC_Os11g01330.1	GR:0060218			GO:0009755 - hormone-mediated signaling, GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus	TO:0000346 - tiller number, TO:0000401 - plant growth hormone sensitivity, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000089 - panicle type, TO:0000329 - tillering ability, TO:0000544 - mesocotyl length, TO:0000077 - shoot anatomy and morphology trait, TO:0000135 - leaf length, TO:0000326 - leaf color	PO:0025034 - leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
922	Z1	z1	ZEBRA 1	zebra1, zebra 1, zebra-1			11	Zebra bands manifest clearly on leaves during the tillering stage. [131] PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061047		9.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
923	ESP2	esp2(rsp2), rsp2, esp2, PDIL1-1	ENDOSPERM STORAGE PROTEIN 2	endosperm storage protein2, endosperm storage protein 2, endosperm storage protein-2, endosperm storage protein mutant2, protein disulfide isomerase-like 1-1	ENDOSPERM STORAGE PROTEIN 2		11	The intensity of 57kD polypeptide in seed storage protein is higher than that for the original cultivar. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060302		17.0	GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait, TO:0000109 - endosperm storage protein-2 content	PO:0009089 - endosperm 
924	V9	v9	VIRESCENT 9	virescent9, virescent 9, virescent-9			11	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060988		23.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000373 - inflorescence anatomy and morphology trait	PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
925	SH1	sh1	SHATTERING 1	shattering1, shattering 1, shattering-1		sh1	11	Shattering habit. PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0060873		33.0		TO:0000473 - grain shattering	PO:0009010 - seed 
926	PIA	Pi a, Pia, Pi-a, Pia-1, Pia-2	PYRICULARIA ORYZAE RESISTANCE A	Pyricularia oryzae resistance-a, Magnaporthe grisea resistance-a, Blast resistance a			11	Resistant to rice blast disease.  Variety 'Aichiasahi' has this gene. Pia is composed of two adjacent genes SasRGA4 (Sasanishiki allele of Os11gRGA4) and SasRGA5. Os11gRGA4: AB604621-AB604625, Os11gRGA5: AB604626-AB604630. (Okuyama et al. 2011) Among the four candidate genes (Os11g0224900, Os11g0225000, Os11g0225100 and Os11g0225300), Os11g0225100 was identified as the most promising candidate for Pia (Zeng et al. 2011). PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. LOC_Os11g11790 (=Os11g0225100) as Pia in Yu et al. 2018.	 Tolerance and resistance - Disease resistance			GR:0060612		36.0	GO:0006952 - defense response	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000507 - osmotic adjustment capacity	PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0020141 - stem node , PO:0009047 - stem 
927	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1	ALCOHOL DEHYDROGENASE 1	Alcohol dehydrogenase1, Alcohol dehydrogenase 1, Alcohol dehydrogenase-1, reduced adh activity, Alcohol dehydrogenase I	ALCOHOL DEHYDROGENASE 1	Adh1-0, Adh1-1, Adh1-2, Adh1-3, rad	11	Dimer. P & C(ST-H). EC=1.1.1.1 Q75ZX4(indica). Q2R8Z5(japonica). X16296. AF148568-AF148598 (O.sativa and other wild rice species). AY749209-AY749246 (O.sativa and other wild rice species). D10412. FJ810879-FJ810918 (Oryza glaberrima, Oryza barthii, Oryza nivara). AB469048-AB469065 (O.sativa and other wild rice species). AY169473-AY169482 (wild rice species).  DQ223326-DQ223334, DQ223352-DQ223399, DQ223404-DQ223408, DQ911245, DQ911246 (wild rice species). EF069438-EF069504 (O.sativa and other wild rice species). FJ266019-FJ266028 (indica and other wild rice species). GQ203296-GQ203303 (wild rice species). JQ414289-JQ414355 (wild rice species). D15646, D15540. BGIOSGA034312.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0210300	LOC_Os11g10480.4, LOC_Os11g10480.1, LOC_Os11g10480.2	GR:0060011		37.0	GO:0018468 - alcohol dehydrogenase (acceptor) activity, GO:0005737 - cytoplasm, GO:0055114 - oxidation reduction, GO:0001666 - response to hypoxia, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0008270 - zinc ion binding, GO:0009413 - response to flooding	TO:0001007 - coleoptile length, TO:0000114 - flooding related trait, TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity	
928	SP1	sp, SP, OsNPF4.1, NPF4.1, OsSP1	SHORT PANICLE 1	short panicle, SHORT PANICLE, short panicle1, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 4.1	PEPTIDE TRANSPORTER FAMILY TRANSPORTER 1	sp1-1, sp1-2	11	peptide transporter (PTR) gene family. SP1 encodes a putative PTR family transporter. Proton oligopeptide transporter (POT).	 Character as QTL - Yield and productivity,  Reproductive organ - Inflorescence	Os11g0235200	LOC_Os11g12740.1	GR:0060900		38.0	GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0002759 - grain number, TO:0000089 - panicle type, TO:0000050 - inflorescence branching	PO:0009049 - inflorescence 
929	D28	d28(d C), dwf24, dC, d28	DWARF CHOKEIDAIKOKU OR LONG STEMMED	chokeidaikoku or long stemmed dwarf, dwarf-28			11	"Similar to \"Daikoku\" , but long culms.[10003] PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009010; seed ; PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage."	 Vegetative organ - Culm			GR:0060207		46.0	GO:0007275 - multicellular organismal development, GO:0015995 - chlorophyll biosynthetic process	TO:0000576 - stem length, TO:0000089 - panicle type, TO:0000391 - seed size, TO:0000370 - leaf width, TO:0000145 - internode length, TO:0000135 - leaf length, TO:0000299 - leaf lamina color, TO:0000484 - seed shape, TO:0000492 - leaf shape	PO:0020142 - stem internode , PO:0009010 - seed , PO:0009025 - vascular leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
930	PGD1	Pgd1, 6Pgd1	PHOSPHOGLUCONATE DEHYDROGENASE	Phosphogluconate dehydrogenase1, Phosphogluconate dehydrogenase 1, Phosphogluconate dehydrogenase-1	PHOSPHOGLUCONATE DEHYDROGENASE	Pgd1-1, Pgd1-2, Pgd1-3	11	Dimer. P(PAGE-TC,ST-C), C(ST-C). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060600		56.0	GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity		
931	V4	v4	VIRESCENT 4	virescent4, virescent 4, virescent-4			11	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060983		61.0	GO:0009266 - response to temperature stimulus, GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000432 - temperature response trait, TO:0000299 - leaf lamina color	PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
932	LA	la	LAZY GROWTH HABIT	lazy growth habit			11	Tillers grow as spreading horizontally. [499] This gene is located on chromosome 11 flanked by markers R728 (1.0cM) and C549B (0.4cM). PO:0009047; stem ; PO:0000003; whole plant.	 Vegetative organ - Culm			GR:0060491		72.0	GO:0007275 - multicellular organismal development	TO:0000401 - plant growth hormone sensitivity, TO:0000427 - culm angle	PO:0009047 - stem , PO:0000003 - whole plant 
933	DRP7	drp7, OsHSD1, LGF1, HSD1	DRIPPING-WET LEAF 7	dripping-wet leaf7, dripping-wet leaf 7, dripping-wet leaf-7, hydroxysteroid dehydrogenase 1, Leaf Gas Film 1, dripping wet leaf 7		oshsd1, drp7	11	Leaf surface appears wet. LOC_Os11g30560. LC363889, LC363890. GO:1902930: regulation of alcohol biosynthetic process. PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os11g0499600	LOC_Os11g30560.1	GR:0060247		77.0	GO:0006633 - fatty acid biosynthetic process, GO:0034309 - monohydric alcohol biosynthetic process, GO:0010025 - wax biosynthetic process, GO:0009413 - response to flooding, GO:0055088 - lipid homeostasis, GO:0005783 - endoplasmic reticulum, GO:0006629 - lipid metabolic process, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0010166 - wax metabolic process, GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity, GO:0042335 - cuticle development	TO:0000145 - internode length, TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000493 - leaf composition trait, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance, TO:0000114 - flooding related trait, TO:0000602 - total fat content	PO:0020104 - leaf sheath , PO:0009025 - vascular leaf 
934	Z2	z2	ZEBRA 2	zebra2, zebra 2, zebra-2			11	Yellowish pale green zebra bands appear on leaves. [132] PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0061048		95.0	GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf, TO:0000339 - stem thickness	PO:0009047 - stem , PO:0009025 - vascular leaf 
935	XA21	Xa21*, Xa21, OsXA21	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21	Xanthomonas oryzae pv. oryzae resistance 21, Xanthomonas campestris pv. oryzae resistance-21, Xanthomonas oryzae pv. oryzae resistance-21, Xanthomonas resistance 21			11	Xa21 confers resistance to diverse races of Xanthomonas oryzae pv. oryzae and encodes a receptor-like kinase with leucine-rich repeats in the extra-cellular domain.(20627) U72723, U72724, U72725, U72726, U72727, U72728, U72729, U82168. GO:1903428: positive regulation of reactive oxygen species biosynthetic process. GO:0140426: PAMP-triggered immunity signalling pathway. TO:0000993: cellulose content.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0559200	LOC_Os11g35500.1	GR:0061029		104.0	GO:0009414 - response to water deprivation, GO:0006468 - protein amino acid phosphorylation, GO:0002679 - respiratory burst during defense response, GO:0004672 - protein kinase activity, GO:0032940 - secretion by cell, GO:0004674 - protein serine/threonine kinase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005515 - protein binding, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0016567 - protein ubiquitination	TO:0000470 - vascular tissue related trait, TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000731 - lignin content	
936	D27	d27(d t), dt, dwf23, d27, OsD27	DWARF BUNKETSUTO TILLERING	bunketsuto tillering dwarf, dwarf-27, DWARF27, DWARF 27, iron-binding protein D27, OsDWARF27	ION CONATINING PROTEIN	d27, d27-1	11	"Similar to \"bunketsu-waito\". Profuse tillering with slender leaves.[10003]  GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. FJ641055, C7AU21. GO:1901601: strigolactone biosynthetic process. GO:1901698: response to nitrogen compound.  GO:1901601: strigolactone biosynthetic process. GO:0090548: response to nitrate starvation. GO:1901601: strigolactone biosynthetic process. beta-carotene isomerase. GO:1902347: response to strigolactone."	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os11g0587000		GR:0060206		109.0	GO:0009507 - chloroplast, GO:0009733 - response to auxin stimulus, GO:0042594 - response to starvation, GO:0007275 - multicellular organismal development, GO:0010223 - secondary shoot formation, GO:0009735 - response to cytokinin stimulus, GO:0016859 - cis-trans isomerase activity, GO:0005506 - iron ion binding	TO:0000011 - nitrogen sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000207 - plant height, TO:0000401 - plant growth hormone sensitivity, TO:0001013 - lateral root number, TO:0000576 - stem length, TO:0000586 - seminal root length, TO:0000152 - panicle number, TO:0000163 - auxin sensitivity, TO:0000329 - tillering ability, TO:0000370 - leaf width, TO:0002688 - leaf lamina joint bending, TO:0000346 - tiller number	PO:0006343 - axillary shoot system , PO:0009047 - stem , PO:0009025 - vascular leaf 
937	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4, Pikp-1, Pikh-1, Pik1-H4, Pikh-2, Pik2-H4	PYRICULARIA ORYZAE RESISTANCE K	Pyricularia oryzae resistance-k, Magnaporthe grisea resistance-k, Pyricularia oryzae resistance kh-1, Blast resistance k, Pyricularia oryzae resistance kh-2		Pi k-s(Pi-s, Pik-s), Pi k-p(Pik-p), Pi k-m(Pi m, Pik-p), Pi k-h(Pik-h), Pi k-g(Pik-g), Pi1, Pik1-KA, Pik1-KU, Pik2-KA, Pik2-KU, Pikp-1SNK-EKE	11	HQ662330 (Pikh-2 & Pikh-1). Pik-h, an allele of Pik, comprises a pair of NBS-LRR genes, Pikh-1 and Pikh-2. Pikh-1 appears to be constitutively transcribed (Zhai et al. 2014). The transcript abundance of Pikh-2 responds to pathogen challenge (Zhai et al. 2014). Pik1-H4 and Pik2-H4 in Gu et al. 2024. Resistant to rice blast disease. Varieties 'Kanto 51' and 'Kusabue' have this gene. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. A combination of Pik-1 and Pik-2 is required for the expression of Pik resistance (Zhai et al. 2011). Both Pikp-1 and Pikp-2 are required for Pik-p function (Yuan et al. 2011). Pi-km is one of the alleles in the Pi-k locus. Pikm-specific resistance is conferred by cooperation of Pikm1-TS and Pikm2-TS (Ashikawa et al. 2008). Pi1 is an allele at the Pik locus. Like other alleles at this locus, Pi1 consists of two genes: Pi1-5C and Pi1-6C (Hua et al. 2012). Pik-H4 is an allele of the major resistance (R) gene Pi-k which consists of two adjacent nucleotide-binding domain and leucine- rich repeat (NLR) genes, Pik1-H4 and Pik2-H4 (Liu et al. 2017). The original lines of each allele are as follows: Pi-kp from Pusur (the West Pakistani rice variety), Pi-kh from HR-22 (an Indian variety), Pi-ks in Shinriki, Pi-km in Minehikari and Pi-kg(t) in GA20. Pi-kh was renamed Pi54, because Pi-kh is ~2.5Mbp away from the Pik Locus (Sharma et al. 2010). Locus 1: Os11g0688832 (LOC_Os11g46200.1), symbol: Pikm1, Pikm1-TS, Pik1-KA, Pik-1, Pikp-1, Pikm5-NP, Pik1-H4, Pi1-5, sequence: AB462324(Pikm1), AB616658 (Pik1-KA), ABA95385 (Pikm5-NP), AB510251-AB510297 (Pikm1-TS variant 1~ variant 47). Locus 2: Os11g0689100 (LOC_Os11g46210.1, AK073759, AK108692), symbol: Pikm2, Pikm2-TS, Pik2-KA, Pik-2, Pikp-2, Pikm6-NP, Pik2-H4, Pi1-6, sequence: AB462325(Pikm2), AB510298-AB510347 (Pikm2-TS variant 1~variant 50). sequence covering both Os11g0688832 and Os11g0689100: AB462256(Pikm1-TS, Pikm2-TS), HM048900 (Pik-2, Pik-1), HM035360 (Pikp-1, Pikp-2), AB616659 (Pik2-KA, Pik1-KA), HQ606329 (Pi1-5C, Pi1-6C).	 Tolerance and resistance - Disease resistance	Os11g0688832/Os11g0689100	LOC_Os11g46210.1, LOC_Os11g46200.1	GR:0060619		141.0	GO:0009620 - response to fungus, GO:0043531 - ADP binding, GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0017111 - nucleoside-triphosphatase activity, GO:0032491 - detection of molecule of fungal origin, GO:0031982 - vesicle, GO:0006952 - defense response, GO:0009755 - hormone-mediated signaling	TO:0000513 - potassium concentration, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000074 - blast disease	PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0009025 - vascular leaf 
938	ALD3	Ald3*(ald1), Ald3, ald1	ALDOLASE 3	Aldolase3, Aldolase 3, Aldolase-3	ALDOLASE 3		12		 Biochemical character			GR:0060033			GO:0016832 - aldehyde-lyase activity		
939	BPH1	Bph1	BROWN PLANTHOPPER RESISTANCE 1	brown planthopper resistance 1, Brown planthopper resistance-1			12	Closely linked with bph-2. [223] PO:0009006; shoot ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. KX681949 (Indica).	 Tolerance and resistance - Insect resistance			GR:0060089			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009025 - vascular leaf , PO:0009006 - shoot system 
940	BPH10	Bph10(t)*, Bph10	BROWN PLANTHOPPER RESISTANCE 10	brown planthopper resistance 10*, Brown planthopper resistance-10			12	Brown planthopper resistance  introduced from Oryza australiensis. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007047; 02-seedling. KX681950 (Indica).	 Tolerance and resistance - Insect resistance			GR:0060098			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
941	DU4	du4	DULL ENDOSPERM 4	dull endosperm4, dull endosperm 4, dull endosperm-4			12	dull endosperm, low amylose content. low amylose content mutant. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060264			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
942	GA13	ga13	GAMETOPHYTE GENE 13	gametophyte gene13, gametophyte gene 13, gametophyte gene-13			12	Distorted segregation due to gametic selection.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060355			GO:0019953 - sexual reproduction		
943	HBV	Hbv	HOJA BLANCA RESISTANCE	Hoja blanca resistance			12	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Disease resistance			GR:0060439			GO:0009615 - response to virus	TO:0000147 - rice hoja blanca disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
944	IPI	IPi(t)*, IPi. Rmg56	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance, Magnaporthe grisea resistance, Blast resistance			12	PO:0009025; leaf. Map position (47.6-58.3 cM).	 Tolerance and resistance - Disease resistance			GR:0060472			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
945	IPI3	IPi3(t)*, IPi3, Rmg57	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance, Magnaporthe grisea resistance, Blast resistance			12	PO:0009025; leaf. Map position (47.6-58.3 cM).	 Tolerance and resistance - Disease resistance			GR:0060473			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000469 - days to maturity	PO:0009025 - vascular leaf 
946	LEC	Lec*, Lec	LECTIN	Lectin	LECTIN		12		 Biochemical character			GR:0060495			GO:0005530 - lectin, GO:0005529 - sugar binding		
947	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30, Trx30	PYRICULARIA ORYZAE RESISTANCE TA	Pyricularia oryzae resistance-ta, Magnaporthe grisea resistance-ta, Blast resistance ta, Thioredoxin H-type 6, H-type Thioredoxin 6, Thioredoxin 30		Pi ta-2, Pi ta-n, Pi4a(t), Pi4b(t), Pi-4a(t), Pi-4b(t), Pita Tadukan, Pita Konibora, Pita Bizor, Pita Olatifolia, Pita lati	12	Original line (Pita) is Taducan (Indica).  Original line (Pita2) is Shimokita (Japonica). AF207842, AY196754. EU770205-EU770220: Oryza sativa, O. glaberrima, O. rufipogon, O. nivara, and O. barthii, and  O. officinalis. EU346955-EU347006: Oryza rufipogon. AL772419, AB364239-AB364242, AB364479-AB364497: Oryza rufipogon and its related species. GQ918334-GQ918489 and GQ984160. GQ918334-GQ918489 (O.sativa and other wild rice species). GU269201-GU269204. KF891315, JN564634 (O. latifolia). AY885738-AY885768 and DQ374698-DQ374725  (O. sativa and other wild rice species, partial cds). R Gene present in both Nipponbare and 9311. EF533785-EF533786 (partial cds). a target of osa-miR166 (osa-miR166k-3p and osa-miR166l-3p). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0281300	LOC_Os12g18360.2, LOC_Os12g18360.1	GR:0060627		50.4	GO:0006952 - defense response, GO:0006662 - glycerol ether metabolic process, GO:0043531 - ADP binding, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0005524 - ATP binding, GO:0006915 - apoptosis, GO:0009536 - plastid, GO:0009620 - response to fungus	TO:0000521 - stomatal closure time, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009047 - stem 
948	PI12	Pi12(t), Pi12(t)*, Pi12, Pi-12(t)	PYRICULARIA ORYZAE RESISTANCE 12	Magnaporthe grisea resistance-12, Blast resistance 12			12	Resistant  to several races of Pyricularia grisea. [RGN13:16]. PO:0009025; leaf. RIL10(Moroberekan (Japonica)):Map position (42.8-53 cM). 	 Tolerance and resistance - Disease resistance			GR:0060639			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000485 - sterility related trait	PO:0009025 - vascular leaf 
951	PI157	Pi157*, Pi157(t)*, Pi-157, Pi157	PYRICULARIA ORYZAE RESISTANCE 157	Pyricularia oryzae resistance in Moroberekan, Magnaporthe grisea resistance from Moroberekan, Blast resistance			12	Pyricularia oryzae resistance in Moroberekan.  Complete resistance to an Indian isolate, B157 of the blast fungus. PO:0009025; leaf. Original line is Moroberecan (Japonica). Map position (49.5-622.2 cM).	 Tolerance and resistance - Disease resistance			GR:0060657			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000480 - nutrient sensitivity	PO:0009025 - vascular leaf 
953	PI19	Pi19(t), Pi14, Pi19	PYRICULARIA ORYZAE RESISTANCE 19	Pyricularia oryzae resistance 19, Magnaporthe grisea resistance-19, Blast resistance 19			12	(Hayashi et al. 1997 Phytopathology).  Resistant to the race CHNO58-3-1 of Pyricularia grisea. [RGN14:11]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.Original line is Aichi Asahi (Japonica). Pi19(t) was mapped in the centromeric region on chromosome 12 with simple sequence repeat markers RM27937 and RM1337 (Koide et al. 2011).	 Tolerance and resistance - Disease resistance			GR:0060648			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000494 - pigment content, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
954	PI20	Pi20, Pi20(t)	PYRICULARIA ORYZAE RESISTANCE 20	Pyricularia oryzae resistance 20, Magnaporthe grisea resistance-20, Blast resistance 20			12	(Imbe et al. 1997. RGN14:60). Resistant  to several races of Pyricularia grisea. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is RI24 (Indica). Map position (51.5-51.8 cM).	 Tolerance and resistance - Disease resistance			GR:0060649			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000495 - chlorophyll content, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
955	PI6	Pi6(t)*, Pi6, Pi-6(t), pi6(t)	PYRICULARIA ORYZAE RESISTANCE 6	Pyricularia oryzae resistance 6, Magnaporthe grisea resistance-6, Blast resistance 6			12	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Apura (Indic). Map position (32.6-63.2 cM). Pi-6(t) is lcated at about 15.3 cM from RG869 and about 18.4 cM from the isozyme marker, Sdh1.	 Tolerance and resistance - Disease resistance			GR:0060633			GO:0009620 - response to fungus	TO:0000503 - leaf rolling time, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
956	PI62	Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t)	PYRICULARIA ORYZAE RESISTANCE 62	Pyricularia oryzae resistance from Yashiro-mochi, Magnaporthe grisea resistance from Yashiro-mochi, Magnaporthe grisea resistance-62, Blast resistance 62			12	Pyricularia oryzae resistance from Yashiro-mochi(Japonica). PO:0009025; leaf. Map position (12.2-26.0 cM). Mapping results suggest that Pi62(t) may correspond to the previously identified resistance gene Pi-ta (Wu et al. 1996).	 Tolerance and resistance - Disease resistance			GR:0060655			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000479 - acid sensitivity	PO:0009025 - vascular leaf 
957	PRO1	Pro1*, Pro1	PROLAMIN 1	Prolamin1, Prolamin 1, Prolamin-1			12	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060692			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
958	S15	S15(S10), S10	HYBRID STERILITY 15	Hybrid sterility15, Hybrid sterility 15, Hybrid sterility-15		S15-n, S15-du, S15-i	12	Semi-sterility expressed as an allelic interaction such as S15i/S15du. Segregation distortion in B1F1 due to the abortion of female gametes having S15i. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060822		51.0	GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000358 - female sterility	PO:0009046 - flower 
959	SDH1	Sdh1, Skd	SHIKIMATE DEHYDROGENASE 1	Shikimate dehydrogenase1, Shikimate dehydrogenase 1, Shikimate dehydrogenase-1	SHIKIMATE DEHYDROGENASE 1	Sdh1-1, Sdh1-2, Sdh1-3, Sdh1-4	12	Monomer. P(PAGE-TC,ST-H), L&C(ST-H).	 Biochemical character			GR:0060855		17.0	GO:0004764 - shikimate 5-dehydrogenase activity		
960	SPL1	Spl1, spl1(sl,bl2), sl, bl2, spl1	SPOTTED LEAF 1	spotted leaf1, spotted leaf 1, spotted leaf-1			12	Relatively large spots of red brown color appear on leaves from seedling stage and continue to heading time. [137] PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Lesion mimic			GR:0060902		21.0	GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000069 - variegated leaf	PO:0009025 - vascular leaf 
961	RL3	rl3(rl1), rl1, rl3, cul10	ROLLED LEAF 3	rolled leaf3, rolled leaf 3, rolled leaf-3, curl leaf-10			12	Leaf blade is rolled inside. Pale green in the area between veins, forming longitudinal stripes.[140] PO:0009025; leaf.	 Vegetative organ - Leaf			GR:0060766		30.0	GO:0030154 - cell differentiation	TO:0000085 - leaf rolling, TO:0000370 - leaf width, TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
962	D33	d33(d B), dB, dwf29, d33	DWARF BONSAITO	bonsaito dwarf, dwarf-33			12	Dwarf. Many tillers with narrow and rolled leaves. PO:0009047; stem ; PO:0009025; leaf ; PO:0006343; axillary shoot. GRO:0007048; 04-stem elongation stage ; GRO:0007049; 03-tillering stage.	 Vegetative organ - Culm			GR:0060212		32.0	GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000370 - leaf width, TO:0000085 - leaf rolling, TO:0000346 - tiller number, TO:0000576 - stem length, TO:0000207 - plant height	PO:0009025 - vascular leaf , PO:0006343 - axillary shoot system , PO:0009047 - stem 
963	NAL3	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS	NARROW LEAF 3	narrow leaf3, narrow leaf 3, narrow leaf-3, curl leaf-3, WUSCHEL related homeobox 3A, WUSCHEL-related homeobox 3, WUSCHEL-related homeobox 3A	WUSCHEL-LIKE HOMEOBOX 3A	nal3	12	Narrow leaves and grains. [131] PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage. NAL2 on chromosomes 11 and NAL3 on chromosome 12 encode an identical OsWOX3A/OsNS protein that is homologous to NS of maize and PRS of Arabidopsis (Cho et al. 2013). Q33DK1. A2ZH47. OsNS1/OsNS2 and OsWOX3 (corredponding to Os11g0102100/Os12g0101600) in Cheng et al. 2014.  TO:0000784: inflorescence branch anatomy and morphology trait. AB218893.	 Reproductive organ - Panicle, Mode of branching,  Seed - Morphological traits - Grain shape,  Vegetative organ - Root,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os12g0101600	LOC_Os12g01120.1	GR:0060567		37.0	GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0048366 - leaf development, GO:0009651 - response to salt stress, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0010336 - gibberellic acid homeostasis, GO:0009739 - response to gibberellin stimulus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0007275 - multicellular organismal development	TO:0000166 - gibberellic acid sensitivity, TO:0002675 - gibberellic acid content, TO:0001013 - lateral root number, TO:0000346 - tiller number, TO:0000402 - grain width, TO:0000655 - leaf development trait, TO:0000657 - spikelet anatomy and morphology trait, TO:0000492 - leaf shape, TO:0000656 - root development trait, TO:0000370 - leaf width, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000149 - seed width	PO:0009025 - vascular leaf , PO:0001050 - leaf development stage 
964	POX2	Pox2	PEROXIDASE 2	Peroxidase2, Peroxidase 2, Peroxidase-2	PEROXIDASE 2	Pox2-0, Pox2-1 (Pox2-4C)	12	P&L(ST). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060686		40.0	GO:0004601 - peroxidase activity		
965	ACP2	Acp2	ACID PHOSPHATASE 2	Acid phosphatase2, Acid phosphatase 2, Acid phosphatase-2	ACID PHOSPHATASE 2	Acp2-0, Acp2-1 (Acp2-Fa)	12	P(PAGE-TC, ST-C), L(ST). Differential allele frequencies between Indica and Japonica types.	 Biochemical character			GR:0060007		73.0	GO:0003993 - acid phosphatase activity		
966	ACP1	Acp1	ACID PHOSPHATASE 1	Acid phosphatase1, Acid phosphatase 1, Acid phosphatase-1	ACID PHOSPHATASE 1	Acp1-0, Acp1-1 (Acp1--4), Acp1-2 (Acp1-+9), Acp1-3 (Acp1-+4)	12	Dimer. P(PAGE-TC, ST-C). 3 mijor and 3 minor bands appear in L & C (ST-C). Differential allele frequencies between indica and Japonica types.	 Biochemical character			GR:0060006		67.0	GO:0003993 - acid phosphatase activity		
967	AMP6	Amp6(t)*, Amp6	AMINOPEPTIDASE 6	Aminopeptidase6, Aminopeptidase 6, Aminopeptidase-6	AMINOPEPTIDASE 6				 Biochemical character			GR:0060041			GO:0004177 - aminopeptidase activity		
969	ACP4	Acp4	ACID PHOSPHATASE 4	Acid phosphatase4, Acid phosphatase 4, Acid phosphatase-4	ACID PHOSPHATASE 4	Acp4-1, Acp4-2	7	Monomer. P(ST-C).	 Biochemical character			GR:0060009		116.0	GO:0003993 - acid phosphatase activity		
970	SSV	Ssv*, Dwf44, Ssv	SHORT STATURE ONLY IN THE VEGETATIVE PHASE	short stature only in the vegetative phase, Short stature (vegetative type)			7	Short stature(vegetative type). PO:0009047; stem. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage.	 Vegetative organ - Culm			GR:0060927		23.0	GO:0007275 - multicellular organismal development	TO:0000576 - stem length	PO:0009047 - stem 
971	S17	S17(t)*	HYBRID STERILITY 17	Hybrid sterility17, Hybrid sterility 17, Hybrid sterility-17			12	S17 causes female gamete abortion. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060824			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0009046 - flower 
972	MS1P	ms1P*	PHOTOPERIOD-SENSITIVE MALE STERILITY 1	photoperiod-sensitive male sterility1					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0009648 - photoperiodism, GO:0007275 - multicellular organismal development	TO:0000009 - genic male sterility-photoperiod sensitive	
973	MS2P	ms2P*	PHOTOPERIOD-SENSITIVE MALE STERILITY 2	photoperiod-sensitive male sterility2					 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development, GO:0009648 - photoperiodism	TO:0000009 - genic male sterility-photoperiod sensitive	
974	PI	Pi(t)*, Pi(t)	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance, Magnaporthe grisea resistance, Blast resistance			4	PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Original line is P167 (Indica).	 Tolerance and resistance - Disease resistance			GR:0060629			GO:0009620 - response to fungus	TO:0000470 - vascular tissue related trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009047 - stem , PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
975	SHL1	shl1, sh1	SHOOTLESS 1	shootless 1, shootless-1		shl1-1, shl1-2, shl1-3	12	In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Scutellum and radicle are normal. Modifies the expression domain of homeobox gene OSH1. Phenotypes of the two alleles are the same. PO:0009009; embryo ; PO:0020144; apical meristem. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060879			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0020144 - apical meristem , PO:0009009 - plant embryo 
976	SHL2	shl2, SHL2, sh2, OsRDR6, RDR6	SHOOTLESS 2	shootless 2, shootless-2, Probable RNA-dependent RNA polymerase SHL2, Protein SHOOTLESS 2, SHOOTLESS2, RNA-dependent RNA polymerase 6, rod-like lemma	PROBABLE RNA-DEPENDENT RNA POLYMERASE SHL2	shl2-1, shl2-2, shl2-3, shl2-4, shl2-5, shl2-6, shl2-7, shl2-8, shl2-9, shl2-10, shl2-11, shl2-12, shl2-rol, rol, rdr6, rdr6-11, osrdr6-1, osrdr6, Osrdr6-mei, Osrdr6-bi, Osrdr6-edit	1	In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Scutellum and radicle are normal. Extremely reduce the expression domain of homeobox gene OSH1. EC=2.7.7.48 RNA-dependent RNA polymerase. AB353923. Q8LHH9. PO:0009009; embryo ; PO:0020144; apical meristem. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. the NCBI Gene Expression Omnibus database under accession number GSE151871.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Vegetative organ - Shoot apical meristem(SAM),  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Embryo,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0527600	LOC_Os01g34350.1	GR:0060880			GO:0030422 - production of siRNA involved in RNA interference, GO:0009737 - response to abscisic acid stimulus, GO:0009266 - response to temperature stimulus, GO:0006950 - response to stress, GO:0005739 - mitochondrion, GO:0010492 - maintenance of shoot apical meristem identity, GO:0042742 - defense response to bacterium, GO:0009888 - tissue development, GO:0003968 - RNA-directed RNA polymerase activity, GO:0009408 - response to heat, GO:0016246 - RNA interference, GO:0003723 - RNA binding, GO:0051607 - defense response to virus, GO:0009887 - organ morphogenesis, GO:0031047 - gene silencing by RNA, GO:0042138 - meiotic DNA double-strand break formation, GO:0006306 - DNA methylation	TO:0000485 - sterility related trait, TO:0000164 - stress trait, TO:0000432 - temperature response trait, TO:0002718 - awn anatomy and morphology trait, TO:0000274 - floret anatomy and morphology trait, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0000148 - viral disease resistance, TO:0000064 - embryo related trait, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0020144 - apical meristem , PO:0009009 - plant embryo 
977	SHL3	shl3, sh3	SHOOTLESS 3	shootless 3, shootless-3				In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Radicle is differentiated but rooting is expressed only in seed maturity process and becomes necrotic. Expression of homeobox gene, OSH1 is normal. PO:0009009; embryo ; PO:0020144; apical meristem ; PO:0020031; radicle. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0060881			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait	PO:0020144 - apical meristem , PO:0009009 - plant embryo , PO:0020031 - radicle 
978	SHL4	shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2	SHOOTLESS 4	shootless 4, shootless-4, Protein argonaute 7, Protein SHOOTLESS 4, Protein SHOOT ORGANIZATION 2, SHOOT ORGANIZATION2, ARGONAUTE 7, Argonaute 7	ARGONAUTE 7	shl4-1, shl4-2, sho2	3	EF486281. AB353924. Q75HC2. In embryogenesis, shoot apical meristem is not differentiated. Coleoptile and epiblast are lost. Scutellum and radicle are normal. Expression of homeobox gene, OSH1 is normal. Morphology of embryo of the mutant is the same as shl1 or shl2. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. TO:0006064: rolled leaf.	 Vegetative organ - Leaf,  Seed - Morphological traits - Embryo,  Vegetative organ - Shoot apical meristem(SAM)	Os03g0449200	LOC_Os03g33650.1	GR:0060882			GO:0009888 - tissue development, GO:0003676 - nucleic acid binding, GO:0010492 - maintenance of shoot apical meristem identity, GO:0016246 - RNA interference, GO:0009887 - organ morphogenesis	TO:0000064 - embryo related trait, TO:0002681 - leaf curling, TO:0000206 - leaf angle	PO:0020144 - apical meristem , PO:0009009 - plant embryo 
2000	V12	v12(t)	VIRESCENT 12	virescent12, virescent 12, virescent-12				This mutant exhibits fine white stripes during seedling stage. At flowering, the white stripes appear again on the leaf sheaths of flagleaf and the uppermost internode shows milky white color. PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Coloration - Chlorophyll			GR:0060991			GO:0015995 - chlorophyll biosynthetic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000426 - internode color, TO:0000326 - leaf color	PO:0009025 - vascular leaf , PO:0020142 - stem internode 
2001	GLU4	glu4-c(t), glu4(t)*, glu11	GLUTELIN 4	lack of glutelin subunit(alpha-2)-4, rice glutelin-11	GLUTELIN 4		1	PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060393		107.0	GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
2002	COL	col	COLLARLESS	collarless			4	This mutant lacks the collar of leaf. PO:0020105; ligule.	 Vegetative organ - Leaf			GR:0060173		91.0	GO:0007275 - multicellular organismal development	TO:0000335 - ligule shape	PO:0020105 - ligule 
2004	ALV	al-v(t)*, yl, al11	VARIEGATED ALBINO	variegated albino, albino-11, albino11, albino 11			4	Might be caused by a mutation at tha locus al5 or al7 on the same chromosome 4. PO:0009025; leaf. GRO:0007047; 02-seedling.	 Coloration - Chlorophyll			GR:0060030			GO:0015994 - chlorophyll metabolic process, GO:0009658 - chloroplast organization	TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
2005	AN5	An5(t), an5, An5(t)*	AWN 5	Awn-5, awn-5			3	An5(t) might be the same lucus as An3. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061159			GO:0007275 - multicellular organismal development, GO:0030154 - cell differentiation	TO:0000072 - awn length	PO:0006032 - lemma awn 
2006	BA*	Ba*, B(a)	_	Beaded grain arrangement a				complementary genes. PO:0006322; third order inflorescence branch ; PO:0009049; inflorescence. 	 Reproductive organ - Inflorescence			GR:0060066			GO:0007275 - multicellular organismal development	TO:0000142 - secondary branching of inflorescence, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0006322 - second order inflorescence branch 
2007	BUC	Buc*, Buc	BIG UPPERMOST CULM	Big uppermost culm			8	Incompletely dominant gene, makes larger diameter of the uppermost culm. PO:0009047; stem ; PO:0020142; stem internode. GRO:0007048; 04-stem elongation stage.	 Vegetative organ - Culm			GR:0060104			GO:0009825 - multidimensional cell growth	TO:0000339 - stem thickness, TO:0000132 - basal internode diameter	PO:0009047 - stem , PO:0020142 - stem internode 
2008	CHT	Cht(t)*	CLASS III CHITINASE HOMOLOGUES	Class III chitinase homologues (seven cDNAs)	CLASS III CHITINASE HOMOLOGUES		1		 Biochemical character						GO:0004568 - chitinase activity		
2009	CI	CI*	CI ANTHOCYANIN REGULATORY GENE	rice CI anthocyanin regulatory gene					 Biochemical character						GO:0009718 - anthocyanin biosynthetic process		
2010	[CMS-DRW21018]	[cms-DRW21018]*, [cms-DRW21018]	CYTOPLASMIC MALE STERILITY DRW21018	'DRW21018' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060148			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2011	[CMS-DRW21030]	[cms-DRW21030]*, [cms-DRW21030]	CYTOPLASMIC MALE STERILITY DRW21030	'DRW21030' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060149			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2012	[CMS-DRW21039]	[cms-DRW21039]*, [cms-DRW21039]	CYTOPLASMIC MALE STERILITY DRW21039	'DRW21039' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060150			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
2013	[CMS-RPW21111]	[cms-RPW21111]*, [cms-DPW21111], [cms-RPW21111]	CYTOPLASMIC MALE STERILITY RPW21111	'RPW21111' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060157			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009082 - spikelet floret , PO:0020048 - microspore 
2014	[CMS-VN1]	[cms-VN1]*, [cms-VN1]	CYTOPLASMIC MALE STERILITY VN 1	'VN1' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060165			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
2016	CRL1	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1	CROWN ROOTLESS 1	crown rootless-1, CROWN ROOTLESS1, Crown rootless1, ADVENTITIOUS ROOTLESS1, ADVENTITIOUS ROOTLESS 1, lateral organ boundaries domain 3-2	LATERAL ORGAN BOUNDARIES (LOB) CLASS I	arl1, crl1, Oscrl1	3	Mapped on the short arm of chromosome 3. Lack a crown root when rooting of a seed.CRL1 encodes a member of the plant-specific ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES protein family.The recessive mutant, crl1, is defective in crown root formation.MNU induced mutant from Taichung 65. LOB domain protein. PO:0009005; root. GRO:0007047; 02-seedling. AB200234. AY736375. ARL1 is an auxin responsive factor involved in auxin-mediated dedifferentiation. KC609184-KC609196 (O. sativa and wild rice species, partial cds). GO:1990110: callus formation. ortholog of Arabidopsis LBD17/LBD29. GO:2000280: regulation of root development. GO:1990110: callus formation.	 Vegetative organ - Root	Os03g0149100	LOC_Os03g05510.1	GR:0060175			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development, GO:0048830 - adventitious root development	TO:0000084 - root number, TO:0000227 - root length, TO:0000428 - callus induction, TO:0002685 - crown root number	PO:0009005 - root 
2017	CRL2	crl2*, crl2	CROWN ROOTLESS 2	crown rootless-2, CROWN ROOTLESS2			1	Both the initiation of and subsequent growth of crown root primordia are impaired. This mutant shows many abnormal morphological characters besides the defect in the formation of crown roots. crl2 is located within 0.8cM between C2690-2 and C2134-2. PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Root			GR:0060176			GO:0009888 - tissue development, GO:0009887 - organ morphogenesis	TO:0000227 - root length, TO:0000084 - root number	PO:0009005 - root 
2018	D61	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1, OsBRKq1, BRKq1	DWARF 61	dm-type dwarf, dwarf-61, DWARF61, BRASSINOSTEROID INSENSITIVE 1, BR receptor BRASSINOSTEROID INSENSITIVE1, BRASSINOSTEROID-INSENSITIVE1, brassinosteroid insensitive 1, BR INSENSITIVE1		d61-1, d61-2, d61-3, d61-4, d61-5, d61-6, d61-7, d61-8, d61-9, d61-10, Osbri1, bri1, bri1-D, d61-1N, d61	1	BAB68053. GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007059; 2.01-first leaf through coleoptile. This gene functions in various growth and developmental processes in rice, including internode elongation, bending of the lamina joint, and skotomorphogenesis. Complementing to d61 dwarf gene, wild type of OsBRI1 recovers normal phenotype. extra sporogenous cells-like.  brassinosteroid receptor. a rice ortholog of Arabidopsis BRI1/SR160. PO:0030123: panicle inflorescence.  TO:0000789: bud morphology trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits,  Vegetative organ - Leaf,  Biochemical character	Os01g0718300	LOC_Os01g52050.1	GR:0060226			GO:0009753 - response to jasmonic acid stimulus, GO:0009729 - detection of brassinosteroid stimulus, GO:0004903 - growth hormone receptor activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid, GO:0009647 - skotomorphogenesis, GO:0005886 - plasma membrane, GO:0009742 - brassinosteroid mediated signaling, GO:0050832 - defense response to fungus, GO:0009741 - response to brassinosteroid stimulus, GO:0051607 - defense response to virus, GO:0001578 - microtubule bundle formation, GO:0016049 - cell growth, GO:0010229 - inflorescence development, GO:0009908 - flower development, GO:0006468 - protein amino acid phosphorylation	TO:0000357 - growth and development trait, TO:0000621 - inflorescence development trait, TO:0002730 - grain shape, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000576 - stem length, TO:0000396 - grain yield, TO:0000255 - sheath blight disease resistance, TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0002688 - leaf lamina joint bending, TO:0000172 - jasmonic acid sensitivity, TO:0000085 - leaf rolling, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000145 - internode length, TO:0000590 - grain weight, TO:0000206 - leaf angle	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0020033 - coleoptile , PO:0006347 - stem intercalary meristem , PO:0020104 - leaf sheath , PO:0020142 - stem internode , PO:0009047 - stem 
2019	DH	D-h(t)*, Dwf43, D-h	DOMINANT DWARF	Dominant dwarf		d-h	1	Dominant gene. All internodes and panicle are reduced in length to about 70%. The grain become smaller and rounder. PO:0009047; stem. The 63-bp deletion identified in the LOC_Os01g10460 gene was responsible for the dwarf phenotype of the HD1 (Pia et al. 2014). LOC_Os01g10460. 	 Seed - Morphological traits,  Vegetative organ - Culm	Os01g0201275 	LOC_Os01g10460.1	GR:0060227			GO:0009740 - gibberellic acid mediated signaling, GO:0007275 - multicellular organismal development	TO:0000397 - grain size, TO:0000040 - panicle length, TO:0000391 - seed size, TO:0000166 - gibberellic acid sensitivity, TO:0000576 - stem length, TO:0000287 - brown rice shape, TO:0000145 - internode length, TO:0000207 - plant height, TO:0002730 - grain shape	PO:0009047 - stem , PO:0009049 - inflorescence 
2020	DEC	dec*, dec	DECUSSATE	decussate (phyllotactic abnormality), decussate				PO:0020105; ligule.	 Vegetative organ - Leaf			GR:0060230			GO:0007275 - multicellular organismal development	TO:0000335 - ligule shape	PO:0020105 - ligule 
2022	DU6A	du6a(t)*, du6, du6a	DULL ENDOSPERM 6A	dull endosperm-6a, dull endosperm-6				duplicate. PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060266			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
2023	DU6B	du6b(t)*, du6b, du7	DULL ENDOSPERM 6B	dull endosperm-6b, dull endosperm-7				PO:0009089; endosperm. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060267			GO:0009568 - amyloplast starch grain, GO:0005976 - polysaccharide metabolic process	TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm 
2024	DU7	Du7(t)*, Du7, Du8	DULL ENDOSPERM 7	Dull endosperm-7, Dull endosperm-8				PO:0020091; male gametophyte ; PO:0009089; endosperm. GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Storage substances			GR:0060268			GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain	TO:0000196 - amylose content, TO:0000105 - dull endosperm, TO:0000053 - pollen sterility	PO:0020091 - obsolete microgametophyte , PO:0009089 - endosperm 
2025	EML2	eml2*, eml2	EMBRYOLESS 2	embryoless2, embryoless 2, embryoless-2				PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0060293			GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis, GO:0009266 - response to temperature stimulus	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2026	ES1	Es1(t)*, Es1	EXTRUDING STIGMA 1	Extruding stigma-1			6	PO:0006318; floret (sensu Poaceae) ; PO:0006497; stigma epidermis (sensu Poaceae). GRO:0007044; 06-heading stage.	 Seed - Physiological traits - Storage substances			GR:0061066			GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development	TO:0000044 - stigma exsertion	PO:0009082 - spikelet floret , PO:0006061 - stigma epidermis 
2027	FES4	fes4*, fes4	PHOTOPERIOD AND TEMPERATURE SENSITIVE FEMALE STERILITY	photoperiod and temperature sensitive female sterility, female sterile 4, female sterile-4				PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060328			GO:0007275 - multicellular organismal development	TO:0000229 - photoperiod sensitivity, TO:0000358 - female sterility, TO:0000432 - temperature response trait	PO:0009011 - plant structure , PO:0009062 - gynoecium , PO:0000003 - whole plant 
2028	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb1, Glb, OsEnS-77	LACK OF ALPHA-GLOBULIN	lack of alpha-globulin, alpha-globulin, 26 kDa globulin, 19 kDa globulin, 19kD globulin, endosperm-specific gene 77, Globulin23	ALPHA-GLOBULIN		5	Lacks alpha-globulin in a seed protein. PO:0009010; seed. D50643. P29835. AY427575(promoter region). X63990. L12252. Globulin23 in Huang et al. 2016.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Embryo	Os05g0499100	LOC_Os05g41970.1	GR:0060370			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait, TO:0002661 - seed maturation	PO:0009010 - seed 
2029	GLE4	gle4*, gle4	GLOBULAR EMBRYO 4	globular embryo4, globular embryo 4, globular embryo-4		gle4-1, gle4-2		This mutant does not differentiate any embryonic organs, but stays in globular morphology even fully matured. PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0060375			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2030	GLH9	Glh9(t)*, Glh9	GREEN LEAFHOPPER RESISTANCE 9	Green leafhopper resistance-9(t), Green leafhopper resistance-9, Green leafhopper resistance 9				Resistant to green leafhopper. PO:0009011; plant structure ; PO:0000003; whole plant.  the dominant gene for resistance to green leafhopper in IR28.	 Tolerance and resistance - Insect resistance			GR:0060384			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2031	GM5	Gm5*, Gm5	GALL MIDGE RESISTANCE 5	Gall midge resistance5, Gall midge resistance 5, Gall midge resistance-5			12	PO:0009011; plant structure ; PO:0000003; whole plant. Gm5 is mapped within 13.2 Mb region on chromosome 12 between  RM101 and RM309 (Dubey et al. 2010).	 Tolerance and resistance - Insect resistance			GR:0060421			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
2032	GM6	Gm6(t), Gm6	GALL MIDGE RESISTANCE 6	Gall midge resistance6, Gall midge resistance 6, Gall midge resistance-6			4	Resistant to Chinese GM biotypes 1,2,3,and 4 but susceptible to Indian GM biotype 1,2,3, and 4. This gene is located on the chromosome 4 flanked by markers RG214 and RG476. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060422			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
2033	GM7	Gm7*, Gm7	GALL MIDGE RESISTANCE 7	Gall midge resistance-7			4	Resistant to biotype 1,2 and 4 of gall midge (Orseolia oryzae). Gm7 is located on chromosome 4 and tightly linked with Gm2. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061087			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2034	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8, qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H, EF8, OsEF8	Heading date (QTL)-5(t)	"Heading date (QTL)-5(t), Heading date 5, HAP3H SUBUNIT OF CCAAT-BOX BINDING COMPLEX, days to heading8, days to heading on chromosome 8, NUCLEAR FACTOR-Y subunit B11, NUCLEAR FACTOR-Y subunit NF-YB11, rice heterosis 8, \"GRAIN YIELD, PLANT HEIGHT AND HEADING DATE 8\", Carbon Assimilation Rate 8, NF-YB subunit 11, NF-YB family 11, early flowering 8"	OsHAP3 SUBUNIT OF A CCAAT-BOX BINDING PROTEIN	ghd8, dth8, dth8-2, Ghd8NIP, Ghd8ZS97, Ghd8MH63, Ghd8-9311, Ghd8ACC10, Ghd8i, Ghd8j	8	AB693200-AB693204. AB288039. HM775396, HM775397. MT500364 - MT500499. Os08g0174500 which encodes a histone-like CCAAT-box binding transcription factor suggested that the ORF would be tentatively referred to as the first strong candidate gene for qHY-8, a pleiotropic QTL for heading date and yield-related traits. Also this ORF was annotated in RiceGAAS as the candidate gene of Hd5, a gene controlling heading date in rice.  Protein Data Bank under PDB:7C9O (DNA-bound HD1CCT/GHD8/OsNF-YC2) and PDB:7C9P (GHD8/OsNF-YC2).	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Other,  Reproductive organ - Heading date,  Vegetative organ - Culm	Os08g0174500	LOC_Os08g07740.1				GO:0010119 - regulation of stomatal movement, GO:0043565 - sequence-specific DNA binding, GO:0048573 - photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0009648 - photoperiodism, GO:0015979 - photosynthesis, GO:0050832 - defense response to fungus, GO:2000028 - regulation of photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000543 - leaf nitrogen content, TO:0000396 - grain yield, TO:0002616 - flowering time, TO:0002759 - grain number, TO:0000152 - panicle number, TO:0000439 - fungal disease resistance, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000592 - 1000-dehulled grain weight, TO:0000050 - inflorescence branching, TO:0000522 - stomatal conductance, TO:0000447 - filled grain number	
2035	HSA2	hsa2(t)*, hsa2(t), hst50	F2 STERILITY-2(T)	F2 sterility-2(t), hybrid sterility-50		hsa2-AS	8	This gene causes, complementarily with hsa1(t) , F2 sterility in the japonica and india cross. This gene is located on chromosome 8 in the vicinity of RFLP marker G104. f2 sterility in Japonica. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060806			GO:0007275 - multicellular organismal development	TO:0000046 - f2-generation sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2036	HWE1	hwe1(t)*, hwe1, OsHWE1, OsEAF6/HWE1, OsEAF6, EAF6, HWS2, OsHWS2	HYBRID WEAKNESS E1	hybrid weakness e1, hybrid weakness-e1, Esa1-associated factor 6, Hybrid Weakness and Sterility 2	ESA1-ASSOCIATED FACTOR 6	Hwe1-j, hwe1-i, HWS2WYJ7, hwe2, hws2CG14	12	This gene causes hybrid weakness complementarily with hwe2. The hwe1 gene is located on chromosome 12  flanked by RFLP markers R1869 and S1437. CT830710. HWS1 in Liao et al. 2024. GO:1902562: H4 histone acetyltransferase complex. GO:0080186: developmental vegetative growth. GO:0061458: reproductive system development. TO:0000754: cardinal organ part morphology trait. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os12g0298600	LOC_Os12g20310.1, LOC_Os12g20310.2	GR:0060463			GO:0009558 - cellularization of the embryo sac, GO:0009553 - embryo sac development, GO:0009791 - post-embryonic development, GO:0007275 - multicellular organismal development, GO:0010584 - pollen exine formation, GO:0048658 - tapetal layer development, GO:0006772 - thiamin metabolic process, GO:0048544 - recognition of pollen, GO:0032368 - regulation of lipid transport, GO:0046890 - regulation of lipid biosynthetic process, GO:0006768 - biotin metabolic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0040029 - regulation of gene expression, epigenetic, GO:0006325 - chromatin organization, GO:0048232 - male gamete generation, GO:0016573 - histone acetylation, GO:0000123 - histone acetyltransferase complex, GO:0007276 - gamete generation, GO:0051321 - meiotic cell cycle, GO:0005634 - nucleus, GO:0051301 - cell division, GO:0007292 - female gamete generation, GO:0001709 - cell fate determination	TO:0000036 - hybrid incompatibility, TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000576 - stem length, TO:0000499 - flower anatomy and morphology trait, TO:0000416 - embryosac abortion, TO:0006032 - panicle size, TO:0000456 - spikelet number, TO:0000046 - f2-generation sterility, TO:0000209 - palea number, TO:0000053 - pollen sterility, TO:0000357 - growth and development trait, TO:0000223 - pistil anatomy and morphology trait, TO:0000355 - heterosis, TO:0000214 - anther shape, TO:0000455 - seed set percent, TO:0000019 - seedling height, TO:0000495 - chlorophyll content	PO:0009046 - flower , PO:0025034 - leaf , PO:0009047 - stem , PO:0009051 - spikelet , PO:0009049 - inflorescence 
2037	ITH	Ith*, Ith	INHIBITOR FOR DIFFICULT	Inhibitor for difficult threshing (easy threshing)				PO:0009049; inflorescence. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Shattering			GR:0060487			GO:0009838 - abscission	TO:0000406 - panicle threshability	PO:0009049 - inflorescence 
2038	LH	Lh(t)*, lh(t)	LATE HEADING	Late heading			7	PO:0009049; inflorescence ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0060500		65.0	GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000469 - days to maturity, TO:0000137 - days to heading	PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009082 - spikelet floret 
2039	LMX	lmx*, lmx	LONG LEMMA	long lemma				PO:0009038; palea ; PO:0009037; lemma.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060508			GO:0007275 - multicellular organismal development	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009037 - lemma , PO:0009038 - palea 
2040	LRT1	Lrt1*, Lrt1, Lrt 1	DEFICIENCY OF LATERAL ROOTS	Deficiency of lateral roots, Lateral root-1, LATERAL ROOT LESS1				No lateral root on the roots of young plant. Dominant gene. PO:0009005; root.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root			GR:0060513			GO:0009958 - positive gravitropism, GO:0007275 - multicellular organismal development, GO:0009501 - amyloplast, GO:0051301 - cell division, GO:0009629 - response to gravity, GO:0010311 - lateral root formation	TO:0000227 - root length, TO:0000257 - root branching, TO:0002693 - gravity response trait	PO:0009005 - root 
2043	MR1	mr1*, mr1	MULTIPLE RADICLE 1	multiple radicle-1				PO:0009006; shoot ; PO:0000003; whole plant.	 Seed - Morphological traits - Embryo			GR:0060535			GO:0009790 - embryonic development	TO:0000019 - seedling height, TO:0000250 - vigor related trait	PO:0000003 - whole plant , PO:0009006 - shoot system 
2044	MS-H(T)*	ms-h(t)*, MS-H, ms-h, ms70	MALE STERILE-H	male sterile-h, male sterile-70			9	PO:0009066; anther ; PO:0009046; flower ; PO:0009089; endosperm.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060561			GO:0007275 - multicellular organismal development	TO:0000067 - genic male sterility-thermo sensitive, TO:0000266 - chalky endosperm, TO:0000437 - male sterility	PO:0009046 - flower , PO:0009066 - anther , PO:0009089 - endosperm 
2048	DIM*	OsDIM*, OsDIM, DIM, dim, OSDIM	RICE DIM PROTEIN	Rice DIM protein, rice diminuto	RICE DIM PROTEIN		10		 Vegetative organ - Culm			GR:0060587			GO:0004499 - flavin-containing monooxygenase activity		
2049	FAD3	OsFAD3*, OsFAD3	OMEGA-3 FATTY ACID DESATURASE 3	w-3 fatty acid desaturase-3	OMEGA-3 FATTY ACID DESATURASE 3		11		 Biochemical character			GR:0060588			GO:0004768 - stearoyl-CoA 9-desaturase activity		
2050	FADX	OsFADX*, OsFADX	OMEGA-3 FATTY ACID DESATURASE X	w-3 fatty acid desaturase-X	OMEGA-3 FATTY ACID DESATURASE X		12		 Biochemical character			GR:0060589			GO:0004768 - stearoyl-CoA 9-desaturase activity		
2051	FADY	OsFADY*, OsFADY	OMEGA-3 FATTY ACID DESATURASE Y	w-3 fatty acid desaturase-Y	OMEGA-3 FATTY ACID DESATURASE Y		11		 Biochemical character			GR:0060590			GO:0004768 - stearoyl-CoA 9-desaturase activity		
2054	PDC1	pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1	PYRUVATE DECARBOXYLASE 1	pyruvate decarboxylase-1, Pyruvate decarboxylase isozyme 1, Pyruvate Decarboxylase 1	PYRUVATE DECARBOXYLASE 1		5	This gene is located between two RFLP markers, BCD454A and RZ67 on chromosome 5. EC=4.1.1.1 Q0DHF6(japonica). A2Y5L9(indica). U07339. U26660. D10413. D22926. 	 Reproductive organ - panicle,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0469600	LOC_Os05g39310.1	GR:0060607			GO:0004737 - pyruvate decarboxylase activity, GO:0009413 - response to flooding, GO:0000287 - magnesium ion binding, GO:0010229 - inflorescence development, GO:0030976 - thiamin pyrophosphate binding, GO:0009536 - plastid	TO:0000621 - inflorescence development trait, TO:0000114 - flooding related trait	PO:0001083 - inflorescence development stage 
2055	PDC2	pdc2*, pdc2	PYRUVATE DECARBOXYLASE 2	pyruvate decarboxylase-2, Pyruvate decarboxylase isozyme 2	PYRUVATE DECARBOXYLASE 2		3	This gene encodes the first enzyme of anaerobic fermentation pathway, which plays an important role under flooding conditions. This is located between two RFLP markers, RZ329 and RZ313 on chromosome 3. EC=4.1.1.1 A2XFI3(indica). Q10MW3(japonica). U27350. LOC_Os03g18220.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0293500	LOC_Os03g18220.1, LOC_Os03g18220.2	GR:0060608			GO:0030976 - thiamin pyrophosphate binding, GO:0004737 - pyruvate decarboxylase activity, GO:0046688 - response to copper ion, GO:0000287 - magnesium ion binding	TO:0000021 - copper sensitivity	
2056	PDC3	pdc3*, pdc3, OsPDC3, OsSTA202	PYRUVATE DECARBOXYLASE 3	pyruvate decarboxylase-3, pyruvate decarboxylase 3, Pyruvate decarboxylase isozyme 3	PYRUVATE DECARBOXYLASE 3		7	This gene is located to the bottom of chromosome 7 distal to RFLP marker RG351. EC=4.1.1.1 A2YQ76(indica). Q0D3D2(japonica). U07338.  LOC_Os07g49250. a mature anther-preferentially expressed gene. AB111050.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0693100	LOC_Os07g49250.1	GR:0060609			GO:0000287 - magnesium ion binding, GO:0006066 - alcohol metabolic process, GO:0004737 - pyruvate decarboxylase activity, GO:0030976 - thiamin pyrophosphate binding		PO:0025281 - pollen , PO:0009066 - anther , PO:0009049 - inflorescence 
2057	PI21	pi21, rMg40, OsHMP26, HMP26, OsHIPP5, HIPP5, OsaHIP05, HIP05	PYRICULARIA ORYZAE RESISTANCE 21	Pyricularia oryzae resistance-21 (field resistance), Pyricularia oryzae resistance-21, Magnaporthe grisea resistance-21 (field resistance), Magnaporthe grisea resistance-21, Heavy metal-associated protein 26, heavy-metal-associated isoprenylated plant protein 5		pi21, Pi21	4	Field resistance to rice blast in testing nursery under natural conditions. One of QTLs controlling field resistance against rice blast of Japanese upland rice was mapped between RFLP markers G271 and G317 of chromosome 4. Q7XL73. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.AB430852, AB430853, and AB430854. Original line is Owarihatamochi (Japonica). pi21 is a recessive gene. 	 Tolerance and resistance - Disease resistance	Os04g0401000	LOC_Os04g32850.3, LOC_Os04g32850.1, LOC_Os04g32850.2	GR:0060650			GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000074 - blast disease, TO:0000468 - leaf blast disease resistance, TO:0000497 - fertility restoration trait	
2058	PI21	Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t)	PYRICULARIA ORYZAE RESISTANCE 21	Pyricularia oryzae resistance-21, Magnaporthe grisea resistance-21, Blast resistance 21			12	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Sweon365 (Japonica). Map position (43.4-59.6 cM).	 Tolerance and resistance - Disease resistance			GR:0060651			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000496 - carotenoid content, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
2059	PI22	Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t)	PYRICULARIA ORYZAE RESISTANCE 22	Pyricularia oryzae resistance-22, Magnaporthe grisea resistance-22, Blast resistance 22			6	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Suweon365 /Sweon (Japonica). Map position (38.7-41.9 cM).	 Tolerance and resistance - Disease resistance			GR:0060652			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000498 - female fertility restoration trait, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
2060	PI23	Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t)	PYRICULARIA ORYZAE RESISTANCE 23	Pyricularia oryzae resistance-23, Magnaporthe grisea resistance-23, Blast resistance 23			5	PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Original line is Suweon365/Sweon365 (Japonica). Map position (59.3-99.5 cM).	 Tolerance and resistance - Disease resistance			GR:0060653			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000499 - flower anatomy and morphology trait	PO:0009025 - vascular leaf 
2061	PI44	Pi44(t)*, Pi44(t), Pi44, Pi-44(t)	PYRICULARIA ORYZAE RESISTANCE 44	Pyricularia oryzae resistance-44, Magnaporthe grisea resistance-44, Blast resistance 44			11	PO:0009025; leaf. Original line is RIL29 (Moroberekan(Japonica)). Map position (91.4-117.9 cM).	 Tolerance and resistance - Disease resistance			GR:0060654			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000501 - spikelet weight, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
2062	PRT	Prt*, Prt	PURPLE ROOT	Purple root				Purple red colored root. This gene distributes the anthocyanin produced by complimentary genes A and C over the root. Corresponding to P gene for the top part of a plant. PO:0009005; root.	 Coloration - Anthocyanin			GR:0060701			GO:0009812 - flavonoid metabolic process	TO:0000065 - root color	PO:0009005 - root 
2063	PS	Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1	PURPLE STIGMA	Rice R gene (Anthocyanin biosynthesis) : a, basic helix loop helix 13, Rice R gene (Anthocyanin biosynthesis)-a, GLABRA3A, GLABRA 3A, Myelocytomatosis oncogene transcription factor 7, purple stigma	TRANSCRIPTIONAL ACTIVATOR A	hlh1-1, hlh1-2, hlh1-3	4	U39860 (Genetics. 1996 Mar;142)3):1021-31.). AB021079. GRO:0007044; 06-heading stage ; GRO:0007042: 08-dough stage ; GRO:0007045: 09-mature grain stage ; GRO:0007046: 07-milk stage. an R/B-type regulatory gene. OSB1 is an allele of the functional rice Ra1 gene previously reported by Hu et al. (1996) (Shih et al. 2008). OSB1 (Os04g0557800) and OSB2 (Os04g0557500) are the major components of the Plw allele (Sakamoto et al. 2001). a homologue of Arabidopsis transcription factor GL3. OsB2 in Kim et al. 2018,	 Seed - Morphological traits,  Coloration - Anthocyanin	Os04g0557800	LOC_Os04g47080.1	GR:0060719			GO:0046983 - protein dimerization activity, GO:0005634 - nucleus, GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0009536 - plastid, GO:0009812 - flavonoid metabolic process, GO:0005739 - mitochondrion	TO:0000190 - seed coat color, TO:0000487 - endosperm color, TO:0000071 - anthocyanin content, TO:0000185 - stigma color	PO:0009088 - seed coat , PO:0009047 - stem , PO:0009089 - endosperm , PO:0009073 - stigma , PO:0007632 - seed maturation stage 
2064	PSH1	Rb, Rb*, bhlh165, OsbHLH165, Rb2, OsPSH1, OsRb2	PURPLE LEAF SHEATH 1	Rice R gene : b R gene family, Rice R gene-b, basic/helix-loop-helix 165, basic helix loop helix 165, purple leaf sheath 1	TRANSCRIPTIONAL ACTIVATOR B		1	U39866 (Genetics. 1996 Mar;142(3):1021-31.). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Coloration - Anthocyanin	Os01g0577300	LOC_Os01g39580.1	GR:0060720			GO:0030528 - transcription regulator activity, GO:0045449 - regulation of transcription, GO:0010431 - seed maturation, GO:0009812 - flavonoid metabolic process, GO:0005634 - nucleus, GO:0005739 - mitochondrion	TO:0000071 - anthocyanin content, TO:0000487 - endosperm color, TO:0002724 - leaf sheath color, TO:0002661 - seed maturation, TO:0000190 - seed coat color	PO:0009089 - endosperm , PO:0009088 - seed coat , PO:0007632 - seed maturation stage 
2065	RAD	rad, rad*, OsRAD, GEN1, OsGEN-L, OsGEN1	REDUCED ADH ACTIVITY	reduced ADH activity, Flap endonuclease GEN-like 1, Protein OsGEN-like, OsGEN-like	FLAP ENDONUCLEASE GEN-LIKE 1	osgen1	9	EC=3.1.-.- Q64MA3. AB158320, AB194139. PO:0009011; plant structure ; PO:0000003; whole plant. PO:0006452; microspore (sensu Poaceae) ; PO:0009005; root ; PO:0009025; leaf. GRO:0007018; 4.01-pollen development. Yen1/GEN1 ortholog in rice.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0521900	LOC_Os09g35000.1	GR:0080026			GO:0006260 - DNA replication, GO:0048256 - flap endonuclease activity, GO:0005634 - nucleus, GO:0009556 - microsporogenesis, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0000287 - magnesium ion binding, GO:0003697 - single-stranded DNA binding, GO:0003690 - double-stranded DNA binding, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0000724 - double-strand break repair via homologous recombination, GO:0006302 - double-strand break repair, GO:0006330 - single-stranded DNA binding, GO:0007126 - meiosis, GO:0007130 - synaptonemal complex assembly, GO:0009555 - pollen development, GO:0006281 - DNA repair	TO:0000053 - pollen sterility, TO:0000060 - aborted uni-nucleate stage, TO:0000437 - male sterility	PO:0009011 - plant structure , PO:0000003 - whole plant , PO:0020048 - microspore , PO:0009025 - vascular leaf , PO:0009005 - root 
2066	RAL2	ral2*, ral2	RADICLELESS 2	radicleless2, radicleless 2, radicleless-2				This mutant fails to develop a radicle. PO:0009009; embryo ; PO:0009005; root.	 Vegetative organ - Root			GR:0060723			GO:0009790 - embryonic development	TO:0000064 - embryo related trait, TO:0000257 - root branching	PO:0009005 - root , PO:0009009 - plant embryo 
2067	RF6	Rf6(t), Rf6(t)*, Rf5, Rf6	RESTORATION OF FERTILITY 6	Pollen fertility restoration-6			10	Pollen fertility restoration for WA cytoplasm, Pollen fertility restoration for WA and HL cytoplasms. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060745			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
2068	RFWA2	RfWA2(Rf(u)), RfWA2*, Rf(u), Rf8	SMALL GTP-BINDING PROTEIN 1	Pollen fertility restoration-8	SMALL GTP-BINDING PROTEIN 1		10	Pollen fertility restoration for WA cytoplasm. PO:0009066; anther.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration			GR:0060746			GO:0007275 - multicellular organismal development	TO:0000308 - male fertility restoration trait	PO:0009066 - anther 
2069	RFA1	rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1	ELONGATION FACTOR 1A1	rice elongation factor 1A (eEFIA)-1, rice elongation factor 1A-1, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha, eukaryotic translation elongation factor 1A	ELONGATION FACTOR 1A		3	LOC_Os03g08010.1. AF030517. O64937. D29703. Elongation factor Tu.	 Biochemical character	Os03g0177400	LOC_Os03g08010.1	GR:0060749			GO:0003746 - translation elongation factor activity, GO:0005525 - GTP binding, GO:0006414 - translational elongation, GO:0003924 - GTPase activity, GO:0005737 - cytoplasm		
2070	RFA2	rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna	ELONGATION FACTOR 1A2	rice elongation factor 1A (eEFIA)-2, rice elongation factor 1A-2, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha	ELONGATION FACTOR 1A		3	O64937. D15973.	 Biochemical character	Os03g0178000		GR:0060750			GO:0005737 - cytoplasm, GO:0003746 - translation elongation factor activity, GO:0003924 - GTPase activity, GO:0006414 - translational elongation, GO:0005525 - GTP binding		
2071	RFA3	rfa3*, REFA3, refa3, EF1a	ELONGATION FACTOR 1A3	rice elongation factor 1A (eEFIA)-3, rice elongation factor 1A-3, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha	ELONGATION FACTOR 1A		3	O64937.	 Biochemical character	Os03g0177900	LOC_Os03g08050.1	GR:0060751			GO:0006414 - translational elongation, GO:0003746 - translation elongation factor activity, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005737 - cytoplasm		PO:0025281 - pollen 
2072	RFA4	rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha	ELONGATION FACTOR 1A4	rice elongation factor 1A (eEFIA)-4, rice elongation factor 1A-4, ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha, Eukaryotic elongation factor 1-alpha, elongation factor 1 alpha	ELONGATION FACTOR 1A		3	O64937. GQ848073.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os03g0177500	LOC_Os03g08020.1	GR:0060752			GO:0006413 - translational initiation, GO:0003924 - GTPase activity, GO:0016020 - membrane, GO:0006979 - response to oxidative stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0006414 - translational elongation, GO:0005525 - GTP binding, GO:0005737 - cytoplasm, GO:0003746 - translation elongation factor activity, GO:0030104 - water homeostasis, GO:0005856 - cytoskeleton, GO:0005634 - nucleus	TO:0000371 - yield trait, TO:0000136 - relative water content, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000396 - grain yield, TO:0002662 - leaf rolling tolerance, TO:0006002 - proline content, TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000050 - inflorescence branching, TO:0000329 - tillering ability, TO:0000095 - osmotic response sensitivity, TO:0000382 - 1000-seed weight, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000440 - grain number per plant	PO:0009066 - anther , PO:0009005 - root , PO:0020141 - stem node 
2073	RHW	Rhw*, Rhw	HYBRID WEAKNESS RESTORATION	Hybrid weakness restoration				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060754			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
2074	LIM15	RiLIM15*, RiLIM15	LIM 15	Rice LIM15 (Meiosis specific gene), Rice LIM15	LIM 15				 Biochemical character			GR:0060757			GO:0007126 - meiosis		
2075	RIV1	riv1*	RICE VIVIPARY 1	rice vivipary-1		riv1-1, riv1-2		Germination of the seed on the standing panicles before harvest.	 Seed - Physiological traits - Dormancy						GO:0009845 - seed germination		
2076	RIV2	riv2*	RICE VIVIPARY 2	rice vivipary-2				Germination of the seed on the standing panicles before harvest.	 Seed - Physiological traits - Dormancy						GO:0009845 - seed germination		
2077	RMU1	Rmu1*, RMu1	MUTATOR 1	Mutator-like transposon					 Biochemical character			GR:0060779			GO:0006280 - mutagenesis, GO:0006313 - transposition, DNA-mediated, GO:0032196 - transposition, GO:0004803 - transposase activity		
2078	RMU1-IR36*	RMu1-IR36*, RMu1-IR36	MUTATOR 1	Rice Mutator 1-IR36				transposon RMu1, transposon:RMu1. AB006808.	 Biochemical character			GR:0060772			GO:0032196 - transposition, GO:0006280 - mutagenesis		
2079	RMU1-A23*	RMu1-A23*, RMu1-A23	MUTATOR 1	Rice Mutator 1-A23				rice mutator element RMu1-A23, transposon:RMu1-A23. AB023047.	 Biochemical character			GR:0060773			GO:0032196 - transposition, GO:0006280 - mutagenesis		
2080	RMU2-IR36*	RMu2-IR36*, RMu2-IR36	MUTATOR 2	Rice Mutator 2-IR36				tranposable elemet RMu2-IR36, transposon:RMu2-IR36. AB017542.	 Biochemical character			GR:0060774			GO:0032196 - transposition, GO:0006280 - mutagenesis		
2081	RMU2-A1*	RMu2-A1*, RMu2-A1	MUTATOR 2	Rice Mutator 2-A1				transposable element RMu2-A1, transposon:RMu2-A1. AB017543.	 Biochemical character			GR:0060775			GO:0006280 - mutagenesis, GO:0032196 - transposition		
2082	RPR1	RPR1*, Rpr1-1, Rpr1, RPM1, OsRPM1, OsRSR1, RSR1	RICE PROBENAZOL RESPONSIBLE 1	rice probenazol responsible 1	RPR1 PROTEIN		11	PROBENAZOL RESPONSIBLE GENE, Rice probenazol responsible gene, Rice pathogenesis-related protein. E17367(Patent: JP 1998262682-A 1 06-OCT-1998;). AB019186. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:0098542: defense response to other organism.  GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0229500	LOC_Os11g12340.1, LOC_Os11g12340.2	GR:0060780			GO:0006952 - defense response, GO:0005737 - cytoplasm, GO:0009410 - response to xenobiotic stimulus, GO:0043531 - ADP binding, GO:0009405 - pathogenesis, GO:0002758 - innate immune response-activating signal transduction, GO:0050832 - defense response to fungus, GO:0005634 - nucleus	TO:0000605 - hydrogen peroxide content, TO:0000255 - sheath blight disease resistance, TO:0000179 - biotic stress trait	
2084	S18	S18*, Hst39	F1 POLLEN STERILITY 18	F1 pollen sterility 18, Hybrid sterility-39			10	F1 pollen sterility. pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060825			GO:0007275 - multicellular organismal development	TO:0000218 - pollen abortion type, TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0009046 - flower 
2085	S19		F2 POLLEN SEMI-STERILITY 19			S19-glab, S19g, S19s	3	This gene causes pollen semi-sterility in the cross between O. sativa and O. glaberrima.  F2 pollen semi-sterility found in the progeny of Oryza sativa and O. glaberrima. pollen killer. S19 gene initiates gametophytic pollen abortion before the middle 1N stage (Kanaoka et al. 2018).	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000421 - pollen fertility, TO:0000053 - pollen sterility, TO:0000060 - aborted uni-nucleate stage, TO:0000415 - aborted bi-nucleate stage, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2086	S20	S20*, Hst43	F2 POLLEN SEMI-STERILITY 20	F1 pollen semi-sterility-20, Hybrid sterility-43		S20-glab	7	Pollen semi-sterility gene found in the cross between O. sativa and O. glaberrima. F2 pollen semi-sterility found in the progeny of Oryza sativa and O. glaberrima.S20 was highly likely to be allelic to S54(t) and S56(t) (Li et al. 2020). pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060829			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000421 - pollen fertility, TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type	PO:0009046 - flower 
2087	S21	S21*, Hst44	F2 POLLEN SEMI-STERILITY 21	F1 pollen semi-sterility-21, Hybrid sterility-44		S21-gla, S21-ruf	7	Pollen semi-sterility found in the cross between O. sativa and O. glaberrima. F2 pollen semi-sterility found in the progeny of Oryza sativa and O. glaberrima. S21 was located between the two SSR markers, RM5455 and RM6063 on chromosome 7, with map distances of 2.2 and 0.5 cM, respectively (Miyazaki et al. 2007). S23 identified from O. glumaepatula was allelic to S21-gla (Miyazaki et al. 2007). pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion			GR:0060830			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility	PO:0009046 - flower 
2088	SALT2	SalT2*(P), P, SalT2*, Sal2	SALT TOLERANCE 2	Salt tolerance-2			7	incomplete dominance. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0060836			GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity, TO:0000276 - drought tolerance	PO:0009011 - plant structure , PO:0000003 - whole plant 
2089	SD9	sd9(t), sd9, sd(t)*	SEMIDWARF 9	Ginbozu, Gimbozu, semidwarf-9		sd9(t), sd9-n(t)		Reducing culm length by 20% without any negative effects on other proctically important characters.[533] PO:0009047; stem.	 Vegetative organ - Culm			GR:0060850			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
2090	SD10	sd10(t)*, sd10(t), sd10	SEMIDWARF 10	semidwarf-10(Kinmaze), semidwarf-10				PO:0009047; stem.	 Vegetative organ - Culm			GR:0060851			GO:0009826 - unidimensional cell growth	TO:0000576 - stem length, TO:0000207 - plant height	PO:0009047 - stem 
2091	SDR1	Sdr1*, Sdr1	SEED DORMANCY 1	Seed dormancy-1			3	PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060858			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2092	SDR2	Sdr2*, Sdr2	SEED DORMANCY 2	Seed dormancy-2			5	PO:0009010; seed. GRO:0007045; 09-mature grain stage.	 Seed - Physiological traits - Dormancy			GR:0060859			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2093	SE9	Se9	PHOTOSENSITIVITY 9	Photoperiod-sensitivity-9, Photoperiod-sensitivity 9, Photosensitivity-9				Dominant gene for photoperiod sensitivity. Its recessive allele se9 inhibits the expression of photoperiod sensitivity genes at other loci. The segregation of this locus can be observed only under extremely long daylength, presumably more than 17 hours. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060868			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009049 - inflorescence , PO:0000003 - whole plant , PO:0009011 - plant structure 
2095	SH	Sh(t)*, Sh6	SHATTERING	Shattering, Seed shattering, Shattering-6			4	This gene obtained from O. glumaepatula and located on the chromosome 4. May be an allele of Sh3(t). PO:0009010; seed.	 Seed - Physiological traits - Shattering			GR:0061141				TO:0000473 - grain shattering	PO:0009010 - seed 
2096	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL, ELL1, OsELL1, ELL1/SL, OsT5H1	SEKIGUCHI LESION	Sekiguchi lesion, Cytochrome P450 71P1, tryptamine 5-hydroxylase, large lesion mimic 1, early lesion leaf 1	TRYPTAMINE 5-HYDROXYLASE	cyp71a1, llm1, sl, ell1, ost5h-1, ost5h-2	12	Q2QUC5. Sekiguchi lesion (sl) mutation induces large orange to orang-brown lesions (Sekiguchi lesion) that eventurally occupy the entire surface area of leaves. First found in cv. Asahi by Sekiguchi & Furuta, and demonstrated by Kiyosawa that is controlled by a single recessive gene, sl. This is a hypersensitive reaction of plant cells to pathogen resulting the resistance to blast infection. CYP71A1 in Lu et al. 2018. TO:0000975: grain width. OsT5H1 in Bhowal et al. 2021.	 Coloration - Chlorophyll,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Lesion mimic,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os12g0268000	LOC_Os12g16720.1	GR:0060895			GO:0005789 - endoplasmic reticulum membrane, GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0009725 - response to hormone stimulus, GO:0030187 - melatonin biosynthetic process, GO:0009651 - response to salt stress, GO:0006587 - serotonin biosynthetic process from tryptophan, GO:0009646 - response to absence of light, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0042427 - serotonin biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009658 - chloroplast organization, GO:0006913 - nucleocytoplasmic transport, GO:0070265 - necrotic cell death, GO:0012501 - programmed cell death, GO:0005783 - endoplasmic reticulum, GO:0009416 - response to light stimulus, GO:0009266 - response to temperature stimulus, GO:0052545 - callose localization, GO:0004497 - monooxygenase activity, GO:0010224 - response to UV-B, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0010446 - response to alkalinity	TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000482 - chemical stress sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000075 - light sensitivity, TO:0002715 - chloroplast development trait, TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance, TO:0000476 - growth hormone content, TO:0000481 - alkali sensitivity, TO:0000063 - mimic response, TO:0000303 - cold tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000468 - leaf blast disease resistance, TO:0000454 - stem borer resistance, TO:0000357 - growth and development trait, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0002757 - flag leaf length, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000432 - temperature response trait, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content	PO:0009025 - vascular leaf , PO:0009006 - shoot system , PO:0007010 - whole plant fruit ripening stage , PO:0009005 - root , PO:0009011 - plant structure , PO:0000003 - whole plant , PO:0009049 - inflorescence 
2097	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1	SLENDER RICE1	slender rice1-1, slender rice, Giberellin-insensitive gene homolog, DELLA protein SLR1, Protein SLENDER RICE1, Gibberellic acid-insensitive mutant protein, Slender Rice 1, SLENDER 1, SLENDER1, GRAS protein 18	DELLA PROTEIN SLR1	slr1-1, Slr1-d1, Slr1-d3, slr1, slr1-6	3	A constitutive GA-responsive mutant which shows a slender phenotype with elongated stem, leaf sheath, and blade similar to that of rice plants treated exogenously with GA3.This gene is the loss-of-function mutant in the SLR1 gene, which is an ortholog of GAI and RGA in Arabidopsis, RHT in wheat, and D8 in maize. DELLA PROTEIN. Q7G7J6.  AB262980. AB030956. GRO:0007047; 02-seedling. AY781175. OsRGA1 in Zhou et al. 2014. KC611066-KC611074 (O. sativa and wild rice species, partial cds). GO:2001006: regulation of cellulose biosynthetic process. GO:0072488: ammonium transmembrane transport. KC611073. GO:2000033: regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Insect resistance,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0707600	LOC_Os03g49990.1	GR:0061384			GO:0009739 - response to gibberellin stimulus, GO:0050832 - defense response to fungus, GO:0045926 - negative regulation of growth, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0042127 - regulation of cell proliferation, GO:0045449 - regulation of transcription, GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0009413 - response to flooding, GO:0009753 - response to jasmonic acid stimulus, GO:0010468 - regulation of gene expression, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0009637 - response to blue light, GO:0002213 - defense response to insect, GO:0048364 - root development, GO:0006350 - transcription, GO:0051707 - response to other organism, GO:0010162 - seed dormancy, GO:0040008 - regulation of growth	TO:0000227 - root length, TO:0000576 - stem length, TO:0000253 - seed dormancy, TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0006036 - stem elongation, TO:0000286 - submergence sensitivity, TO:0000145 - internode length, TO:0000017 - anatomy and morphology related trait, TO:0000205 - white-backed planthopper resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000112 - disease resistance, TO:0000303 - cold tolerance, TO:0000159 - blue light sensitivity, TO:0000084 - root number, TO:0000492 - leaf shape, TO:0000172 - jasmonic acid sensitivity, TO:0000075 - light sensitivity, TO:0000207 - plant height	PO:0009005 - root , PO:0007089 - stem elongation stage , PO:0009006 - shoot system , PO:0009025 - vascular leaf , PO:0000003 - whole plant , PO:0020142 - stem internode 
2098	SPR4	Spr4(t)*, Spr4(t)	SPREADING PANICLE 4	Spreading panicle4, Spreading panicle 4, Spreading panicle-4				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0060917			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
2099	STRN1	S-trn1(t)*, Strn-l(t)*, Strn, S-trn-l	S-TYPE SELF-INCOMPATIBILITY, THIOREDOXIN HOMOLOGY	S-type self-incompatibility, thioredoxin homology, S-type thioredoxin homology, S-thioredoxin-like gene, self-incompatibility(S) thioredoxin like gene, S-type thioredoxin-like gene, S-type thioredoxin	S-TYPE THIOREDOXIN		1	AB024702. similar to Phalaris coelurescens S-type thioredoxin.	 Biochemical character			GR:0060937			GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity, GO:0000008 - thioredoxin		
2100	SV	SV(t)*	SEED VIABILITY	Seed viability				PO:0009010; seed.	 Vegetative organ - Culm			GR:0060949			GO:0009845 - seed germination	TO:0000345 - seed viability	PO:0009010 - seed 
2101	TA1	Ta1*, Ta1	TILLER AND LEAF ANGLES 1	Tiller and leaf angles-1, Tiller and leaf angles			9	This gene increases tiller, leaf and flag leaf angles. Located between two markers, RZ228 and RG667 on the chromosome 9.	 Vegetative organ - Culm			GR:0060950			GO:0007275 - multicellular organismal development	TO:0000206 - leaf angle	
2102	TS3(T)*	ts3(t)*, ts3	TWISTED STEM-3	twisted stem-3			1	PO:0009047; stem. GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Culm			GR:0060969			GO:0007275 - multicellular organismal development	TO:0000427 - culm angle	PO:0009047 - stem 
2103	TW	tw(t)*(tl), tl, tw	TWISTED LEAF	twisted leaf				In the 3-4 upper leaves including boot leaf, the failure in development of mid-rib causes unbalanced development of leaf blades in the two sides of mid-rib and results in the twisted and drooping leaf.   ,	 Vegetative organ - Leaf			GR:0060975			GO:0007275 - multicellular organismal development	TO:0000085 - leaf rolling	
2104	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1	VIVIPAROUS 1	Viviparous-1, Protein viviparous homolog, B3 domain-containing protein VP1, Transcription activator VP1-rice, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 4	B3 DOMAIN-CONTAINING PROTEIN VP1	Osvp1, Osvp1-1, Osvp1-2, Osabi3	1	Vp1 encodes a seed-specific regulatory transcription factor. a global regulator of seed maturation. D16640. P37398. PO:0009010; seed. GRO:0007045; 09-mature grain stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. GO:1990110: callus formation.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Seed - Physiological traits - Dormancy	Os01g0911700	LOC_Os01g68370.4, LOC_Os01g68370.3, LOC_Os01g68370.2, LOC_Os01g68370.1	GR:0060995			GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0003677 - DNA binding, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009845 - seed germination, GO:0045449 - regulation of transcription, GO:0010187 - negative regulation of seed germination, GO:0034059 - response to anoxia, GO:0009737 - response to abscisic acid stimulus, GO:0017163 - basal transcription repressor activity, GO:0009790 - embryonic development	TO:0000619 - vivipary, TO:0000276 - drought tolerance, TO:0000253 - seed dormancy, TO:0001007 - coleoptile length, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000428 - callus induction	PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
2105	W1	W1*, Hwg1	DOMINANT F1 WEAKNESS	Dominant F1 weakness, Hybrid weakness-g1				complementary. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness			GR:0060996			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000042 - f1-hybrid incompatibility, TO:0000355 - heterosis	PO:0009046 - flower 
2106	W2	W2*, Hwg2	DOMINANT F1 WEAKNESS	Dominant F1 weakness, hybrid weakness-g2				PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness			GR:0060997			GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen	TO:0000355 - heterosis, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2107	WP2	wp2*, wp2	WHITE PANICLE 2	white panicle-2				PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007046; 07-milk stage.	 Coloration - Others			GR:0061003			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content, TO:0000077 - shoot anatomy and morphology trait, TO:0000264 - lemma and palea color	PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
2108	XA15	xa15(t)*(xanm), xanm, xa15	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 15	Xanthomonas oryzae pv. oryzae resistance 15, Xanthomonas campestris pv. oryzae resistance-15, Xanthomonas oryzae pv. oryzae resistance-15					 Tolerance and resistance - Disease resistance			GR:0061023			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
2109	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 23	Xanthomonas oryzae pv. oryzae resistance 23, Xanthomonas campestris pv. oryzae resistance-23, Xanthomonas oryzae pv. oryzae resistance-23		xa23, Xa23SW14	11	Resistant to Philippine races P1 to P10, Chinese pathotypes C1 to C7 and Japanese races T1 to T3 at tillering stage. KP123634, KP123635. LOC_Os11g37620. an executor R gene family. The Xa23 locus, originally from a wild rice (O. rufipogon), confers completely dominant and broad-spectrum resistance against bacterial blight of rice (Zhang et al., 2001). a Xa10-like TAL effector-dependent executor R gene. TO:0006047: calcium concentration.	 Tolerance and resistance - Disease resistance	Os11g0586701	LOC_Os11g37620.1	GR:0061031			GO:0051924 - regulation of calcium ion transport, GO:0009626 - plant-type hypersensitive response, GO:0005783 - endoplasmic reticulum, GO:0010942 - positive regulation of cell death, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
2110	XA24	xa24(t)*, xa24	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 24	Xanthomonas oryzae pv. oryzae resistance 24, Xanthomonas campestris pv. oryzae resistance-24, Xanthomonas oryzae pv. oryzae resistance-24				Resistant to race 6.	 Tolerance and resistance - Disease resistance			GR:0061033			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
2111	XGRPEPC	XgrPepc*, XgrPepc	PHOSPHOENOLPYRUVATE CARBOXYLASE	Phosphoenolpyruvate carboxylase, Phosphoeno/pyruvate carboxylase, PEPCase, C4 PEPCase, Phosphoenol pyruvate carboxylase (C4 type)	PHOSPHOENOLPYRUVATE CARBOXYLASE		1		 Biochemical character			GR:0061039			GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity		
2113	TMS2	tms2	THERMOSENSITIVE MALE STERILITY 2	thermosensitive male sterility2			7	Male sterility responding to temperature above 28C at pollen mother cell formation stage. This mutation was induced by gamma ray irradiation from the variety Reimei.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000067 - genic male sterility-thermo sensitive	
2114	RIV1	riv1	RICE VIVIPARY 1	rice vivipary 1, rice vivipary-1		riv1-1, riv1-2		PO:0009010; seed.	 Seed - Morphological traits - Embryo			GR:0060759			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2115	RIV2	riv2	RICE VIVIPARY 2	rice vivipary 2, rice vivipary-2				PO:0009010; seed.	 Seed - Morphological traits - Embryo			GR:0060760			GO:0009845 - seed germination	TO:0000253 - seed dormancy	PO:0009010 - seed 
2116	SHO2	sho2	SHOOT ORGANIZATION 2	shoot organization 2, shoot organization-2, shoot organization2		sho2-1		PO:0009009; embryo ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. an Ortholog of Arabidopsis AGO7.	 Seed - Morphological traits - Embryo			GR:0060884			GO:0007275 - multicellular organismal development, GO:0009887 - organ morphogenesis, GO:0009888 - tissue development	TO:0000064 - embryo related trait, TO:0000492 - leaf shape	PO:0009025 - vascular leaf , PO:0009009 - plant embryo 
2117	SHO3	sho3	SHOOT ORGANIZATION 3	shoot organization 3, shoot organization-3		sho3-1		PO:0009009; embryo ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Seed - Morphological traits - Embryo			GR:0061065			GO:0009887 - organ morphogenesis, GO:0009888 - tissue development, GO:0007275 - multicellular organismal development	TO:0000064 - embryo related trait, TO:0000492 - leaf shape	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2118	PB1	Pb1, Pbst, RMG58.	PANICLE BLAST RESISTANCE 1	Panicle blast resistance-1, Panicle blast resistance, Panicle blast 1			11	Resistance to panicle blast in testing fields under disease-conducive environments. PO:0009049; inflorescence. Original line is Modan(Indica). Map position (85.7-91.4 cM). AB570371. a coiled-coil-nucleotide-binding site-leucine-rich repeat (CC-NB-LRR) protein.	 Tolerance and resistance - Disease resistance			GR:0060596			GO:0050832 - defense response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009049 - inflorescence 
2119	MORI1	mori1	MORI 1	mori1		mori1-1, mori1-2, mori1-3, mori1-4, mori1-5	3	mori1 plants are characterized by the rapid production of small leaves and short branches. All the characteristics of mori1 plants, such as plastochron, leaf structure, stem structure, size and cell division activity of shoot meristem and photosynthetic activity remain at the 2nd-leaf stage of the wild type and the plants do not enter into a reproductive phase. juvenile-adult phase change. PO:0009047; stem ; PO:0006318; floret (sensu Poaceae) ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.	 Heterochrony			GR:0060530			GO:0007275 - multicellular organismal development	TO:0000492 - leaf shape, TO:0000137 - days to heading, TO:0000207 - plant height	PO:0009025 - vascular leaf , PO:0009082 - spikelet floret , PO:0009047 - stem 
2120	SE11	se11, se11(t)*	PHOTOSENSITIVITY 11	photosensitivity11, photosensitivity 11, photoperiod-sensitivity-11				Recessive gene for photosensitivity. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060870			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0000003 - whole plant , PO:0009011 - plant structure , PO:0009049 - inflorescence 
2121	SE12	Se12	PHOTOSENSITIVITY 12	Photosensitivity12, Photosensitivity 12, Photoperiod-sensitivity-12				Dominant gene for photosensitivity. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060871			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading	PO:0009049 - inflorescence , PO:0000003 - whole plant , PO:0009011 - plant structure 
2122	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB, DLN2, OsDLN2, OsJAG, JAG, OsJAG.1, OsJAG.2, ZOS1-02, OsZOS1-02	STAMENLESS 1	stamenless1, stamenless 1, stamenless-1, open break, pistilloid-stamen, DLN repressor 2, DLN motif protein 2, JAGGED, open-glume, zinc-finger protein TFIIIA class of Oryza sativa 1-02, ZPT of Oryza sativa 1-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-02	opb-1, opb-2, ogl, OsJAGogl	1	Lemma and palea are degenerated, so that they fail to enclose the stamens and pistil. Male sterile due to abnormal stamens. Stamens are transformed into pistils, so that one or two naked seeds can be formed in a single floret when fertilized by normal po... GRO:0007044; 06-heading stage. AB297789, EU443151,  A floral organ mutant of rice, ps, has flowers with degenerated lemma and palea. TO:0000856: lodicule length.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Other sterilities	Os01g0129200	LOC_Os01g03840.1	GR:0060936			GO:0048444 - floral organ morphogenesis, GO:0007275 - multicellular organismal development, GO:0048437 - floral organ development, GO:0048443 - stamen development	TO:0000455 - seed set percent, TO:0006009 - lodicule anatomy and morphology trait, TO:0000223 - pistil anatomy and morphology trait, TO:0000215 - stamen anatomy and morphology trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0006022 - floral organ development trait, TO:0000474 - glume opening, TO:0000437 - male sterility, TO:0000499 - flower anatomy and morphology trait, TO:0000397 - grain size, TO:0002659 - pistil number, TO:0000225 - stamen number	PO:0020091 - obsolete microgametophyte , PO:0009029 - stamen , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009038 - palea , PO:0009082 - spikelet floret 
2123	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393, Pbl6/APO1, Pbl6, OsPbl6, OsFBX202, FBX202	ABERRANT PANICLE ORGANIZATION 1	aberrant panicle organization 1, aberrant panicle organization-1, STRONG CULM 2, STRONG CULM2, F-box protein 321, PRIMARY BRANCH LENGTH6, PRIMARY BRANCH LENGTH 6, F-box-type E3 ubiquitin ligase X202	FOX-BOX PROTEIN	apo1-1, apo1-2, apo1-3, apo1-cri, SCM2-Habataki, SCM2-ST6, Pbl6-ST-1, Pbl6-ST-6	6	This gene temporally regulates the conversion of meristem identity in the reproductive phase. AB292777. PO:0009049; inflorescence ; PO:0006318; floret (sensu Poaceae). GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007044; 06-heading stage. Transcriptional cofactor. Enhance inflorescence branching phenotype. TO:0020083: stem diameter. GSE151043. TO:0000847: panicle inflorescence morphology trait. TO:0000784: inflorescence branch morphology trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - Inflorescence,  Reproductive organ - panicle	Os06g0665400	LOC_Os06g45460.1	GR:0060058			GO:0030154 - cell differentiation, GO:0010229 - inflorescence development	TO:0000339 - stem thickness, TO:0000052 - primary branching of inflorescence, TO:0000641 - primary branch length, TO:0000089 - panicle type, TO:0000050 - inflorescence branching, TO:0000068 - lodging incidence, TO:0000051 - stem strength, TO:0002639 - shoot branching, TO:0000621 - inflorescence development trait, TO:0000456 - spikelet number, TO:0006032 - panicle size, TO:0000040 - panicle length, TO:0000371 - yield trait, TO:0002759 - grain number, TO:0000499 - flower anatomy and morphology trait	PO:0009082 - spikelet floret , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0020148 - shoot apical meristem 
2124	SE10	se10, se10(t)*	PHOTOSENSITIVITY 10	photosensitivity10, photosensitivity 10, photoperiod-sensitivity-10				Ressessive gen for photosensitivity. PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0060869			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity	PO:0009049 - inflorescence , PO:0000003 - whole plant , PO:0009011 - plant structure 
2125	SPW1	SPW1, spw1, MADS16, OsMADS16	SUPERWOMAN 1	SUPERWOMAN1/OsMADS16, SUPERWOMAN1, superwoman-1, MADS-box transcription factor 16, Protein SUPERWOMAN1, Protein APETALA3-like	MADS BOX PROTEIN 16	spw1-1, spw1-2	6	SPW1 gene regulates the identiies of stamens and lodicules. Loss-of-function mutation of SPW1 results in the homeotic conversion of stamens and lodicules to pistils and glumes, respectively. Q944S9. a rice AP3 orthologue. AF077760.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0712700	LOC_Os06g49840.2, LOC_Os06g49840.1	GR:0061142			GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0005739 - mitochondrion, GO:0048437 - floral organ development, GO:0030154 - cell differentiation, GO:0009908 - flower development, GO:0009555 - pollen development, GO:0048455 - stamen formation, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0006022 - floral organ development trait, TO:0000622 - flower development trait	PO:0007615 - flower development stage , PO:0025585 - floral organ formation stage 
2126	DL	OsDL, dl(lop), lop, dl, dl1, OsDRPq3, DRPq3	DROOPING LEAF	drooping leaf, drooping leaf-1, DL protein, Protein DROOPING LEAF, Protein CRABS CLAW homolog, Protein CRC homolog	DL PROTEIN	dl-1, dl-2, dl-5, dl-superman1, dl-superman2, dl-sup1, dl-sup2, dl-sup5, dl-sup6	3	In leaves, DL gene regulates the development of midrib.  In flowers, DL function as a homeotic gene regulating the identity of carpel.  Loss-of-function mutation of DL results in drooping leaves and homeotic conversion of carpel to stamens. Q76EJ0. YABBY gene family. GRO:0007163; leaf stage P2 ; GRO:0007151; 6.1-flowering stage ; GRO:0007044; 06-heading stage ; GRO:0007208; spikelet stage SP7 ; GRO:0007162; leaf stage P4 ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007164; leaf stage P1. orthlog of Arabidopsis CRC (CRAB CLAW). KC609207-KC609216 (O. sativa and wild rice species, partial ads). TO:20109: vascular bundle development trait.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Inflorescence	Os03g0215200	LOC_Os03g11600.2, LOC_Os03g11600.1	GR:0060233		50.0	GO:0030154 - cell differentiation, GO:0048440 - carpel development, GO:0048366 - leaf development, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0010022 - meristem determinacy, GO:0010073 - meristem maintenance, GO:0010229 - inflorescence development, GO:0005634 - nucleus	TO:0000472 - vascular bundle number, TO:0006017 - meristem identity, TO:0000499 - flower anatomy and morphology trait, TO:0000206 - leaf angle, TO:0000124 - flag leaf angle, TO:0000072 - awn length, TO:0000621 - inflorescence development trait, TO:0000371 - yield trait, TO:0000655 - leaf development trait, TO:0002718 - awn anatomy and morphology trait	PO:0009037 - lemma , PO:0009030 - carpel , PO:0009038 - palea , PO:0000229 - flower meristem , PO:0001083 - inflorescence development stage , PO:0000019 - gynoecium primordium , PO:0009009 - plant embryo , PO:0009082 - spikelet floret , PO:0009051 - spikelet , PO:0009029 - stamen , PO:0009025 - vascular leaf 
2127	GRH4	Grh4	GREEN RICE LEAFHOPPER RESISTANCE 4	Green rice leafhopper resistance 4			3	Resistant to green rice leafhopper and complementary with Grh2 located on chromosome 11. The two complementary genes convey higher level of resistance.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect		
2129	BPH11	bph11	BROWN PLANT HOPPER RESISTANCE 11	brown planthopper resistance 11			3	Resistant to brown plant hopper. The gene was introgressed and mapped near RFLP marker G1318 on chromosome 3. PO:0009005; root.	 Tolerance and resistance - Insect resistance			GR:0060100			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
2130	BPH12	bph12	BROWN PLANT HOPPER RESISTANT 12	brown planthopper resistance 12			4	A gene for resistant to brown plant hopper introgressed from O. officinalis was mapped between RFLP markers G271 and R93 on chromosome 4. PO:0009005; root.	 Tolerance and resistance - Insect resistance			GR:0061163			GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
2131	EUI2	eui2	ELONGATED UPPERMOST INTERNODE 2	elongated uppermost internode 2, elongated uppermost internode-2			10	Recessive gene for elongation of the uppermost internode, non-allelic to eui1. PO:0009047; stem ; PO:0020142; stem internode. GRO:0007048; 04-stem elongation stage.	 Vegetative organ - Culm			GR:0060321			GO:0009826 - unidimensional cell growth	TO:0000145 - internode length	PO:0020142 - stem internode , PO:0009047 - stem 
2132	FIB	fib, OsFIB, OsTAR2, TAR2, TSG1, OsTSG1, OsTAA1, TAA1	FISH BONE	fish bone, Trp aminotransferase 2, Tillering and small grain 1, tryptophan aminotransferase 1	TRYPTOPHAN AMINOTRANSFERASE 2 	fib, fib-1, fib-2, tsg1	1	This gene shows pleiotropic abnormalities in root, shoot and flower development.  a tryptophan aminotransferase. orthologous to TAA1/TAR1/TAR2 of Arabidopsis and VT2/VT2-like of maize. TO:0000975: grain width. TO:0001041: root yield.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Root,  Vegetative organ - Culm	Os01g0169800 	LOC_Os01g07500.1	GR:0061164			GO:0046685 - response to arsenic, GO:0030170 - pyridoxal phosphate binding, GO:0010588 - cotyledon vascular tissue pattern formation, GO:0009926 - auxin polar transport, GO:0009734 - auxin mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0009408 - response to heat, GO:0009630 - gravitropism, GO:0048449 - floral organ formation, GO:0048825 - cotyledon development, GO:0009958 - positive gravitropism, GO:0016021 - integral to membrane, GO:0009684 - indoleacetic acid biosynthetic process, GO:0009414 - response to water deprivation, GO:0001558 - regulation of cell growth, GO:0048364 - root development, GO:0010087 - phloem or xylem histogenesis, GO:0016846 - carbon-sulfur lyase activity, GO:0080022 - primary root development, GO:0010078 - maintenance of root meristem identity, GO:0005783 - endoplasmic reticulum, GO:0051302 - regulation of cell division, GO:0009851 - auxin biosynthetic process, GO:0060284 - regulation of cell development, GO:0048467 - gynoecium development, GO:0048830 - adventitious root development	TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0000084 - root number, TO:0002759 - grain number, TO:0000207 - plant height, TO:0000436 - spikelet sterility, TO:0000397 - grain size, TO:0002672 - auxin content, TO:0000031 - silicon sensitivity, TO:0001006 - adventitious root number, TO:0000257 - root branching, TO:0000592 - 1000-dehulled grain weight, TO:0000456 - spikelet number, TO:0002681 - leaf curling, TO:0006032 - panicle size, TO:0000578 - root fresh weight, TO:0000492 - leaf shape, TO:0000259 - heat tolerance, TO:0000206 - leaf angle, TO:0000576 - stem length, TO:0002637 - leaf size, TO:0000276 - drought tolerance, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000346 - tiller number	PO:0009005 - root , PO:0009051 - spikelet , PO:0005001 - basal axillary shoot system , PO:0007520 - root development stage , PO:0025424 - vascular tissue development stage , PO:0009025 - vascular leaf , PO:0009105 - inflorescence branch meristem , PO:0009047 - stem , PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009038 - palea , PO:0009037 - lemma 
2133	PLA2	pla2, pla2(pla2-1, pla2-2), plt2, LHD2, OsLHD2	PLASTOCHRON 2	plastochron2, PLASTOCHRON2, LEAFY HEAD2, Protein terminal ear1 homolog, Protein PLASTOCHRON2, LEAFY HEAD2, leafy-head2	PROTEIN PLASTOCHRON2	pla2-1, pla2-2, pla2, lhd2-1, lhd2-2, lhd2-3	1	Plastochrones are shortened and primary rachis branches are converted into vegetative shoots, i.e. rapid leaf emergence and abnormal panicle.Two recessive alleles, pla2-1 and pla2-2, were identified from M2 population mutagenized with N-methyl-N-nitrosourea.PLA2 encodes MEI2-like RNA-binding protein.Recessive alleles, pla2-1 and pla2-2, exhibit short plastochron and conversion of primary rachis branch primordia to vegetative shoot.  AB244276, DQ393277. A2WY46(indica). Q0JGS5(japonica). PO:0009047; stem ; PO:0020122; inflorescence axis ; PO:0000037; shoot apex ; PO:0009034; floral bract ; PO:0020148; shoot apical meristem ; PO:0020031; radicle ; PO:0020142; stem internode ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007140; B-reproductive stage ; GRO:0007189; panicle stage PA1 ; GRO:0007139; A-vegetative stage ; GRO:0007138; leaf development.	 Heterochrony,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os01g0907900	LOC_Os01g68000.1	GR:0061182			GO:0010229 - inflorescence development, GO:0003723 - RNA binding, GO:0009740 - gibberellic acid mediated signaling, GO:0007275 - multicellular organismal development, GO:0048366 - leaf development, GO:0051781 - positive regulation of cell division, GO:0048367 - shoot development, GO:0010228 - vegetative to reproductive phase transition, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0009739 - response to gibberellin stimulus, GO:0010432 - bract development	TO:0000735 - plastochron, TO:0002638 - shoot meristem development, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000361 - stem anatomy and morphology trait, TO:0006021 - vegetative to reproductive phase transition trait, TO:0000207 - plant height, TO:0000654 - shoot development trait, TO:0000730 - mitotic cell cycle trait, TO:0000492 - leaf shape, TO:0000166 - gibberellic acid sensitivity, TO:0000369 - vegetative growth time, TO:0000346 - tiller number, TO:0000655 - leaf development trait	PO:0025527 - shoot system development stage , PO:0020122 - inflorescence axis , PO:0020031 - radicle , PO:0020148 - shoot apical meristem , PO:0020142 - stem internode , PO:0000037 - shoot apex , PO:0009025 - vascular leaf , PO:0009034 - flower bract , PO:0009047 - stem 
2134	GEM	gem	GYPSY EMBRYO	gypsy embryo				Embryo position on a seed is shifted to more apical region of a seed. PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0061168			GO:0048316 - seed development, GO:0080060 - integument development, GO:0048481 - ovule development	TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2135	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1, OsSYL3, SYL3, TT2, OsTT2	LONG KERNEL 3	long kernel 3, long kernel-3, grain size, grain length and weight protein, GRAIN SIZE 3, G gamma subunit GS3, Heterotrimeric G Protein gamma3 Subunit, style length 3, THEROMOTOLERANCE 2		GS3-1, GS3-2, GS3-3, GS3-4, OsGS3-5, OsGS3-6, OsGS3-7, gs3, GS3-A, GS3-B, GS3-C, gs3-1, gs3-2, gs3-9, gs3-21, OsSYL3AA, OsSYL3CC, GS3MH, GS3ZS, tt2	3	lk3(t) might be the same locus as Lkf. putative transmembrane protein; functions as a negative regulator for grain size. DQ355996. AB488664. OsGW3 in Xia et al. 2015. TO:0011009: style length. PO:0030123: panicle inflorescence. GO:1904276: regulation of wax biosynthetic process. GO:1900366: negative regulation of defense response to insect.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance,  Reproductive organ - panicle,  Reproductive organ - Heading date,  Character as QTL - Grain quality,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape	Os03g0407400		GR:0061175			GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0005886 - plasma membrane, GO:0004871 - signal transducer activity, GO:0009408 - response to heat, GO:0009742 - brassinosteroid mediated signaling, GO:0002213 - defense response to insect, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0007275 - multicellular organismal development, GO:0005834 - heterotrimeric G-protein complex	TO:0000590 - grain weight, TO:0000040 - panicle length, TO:0000137 - days to heading, TO:0000152 - panicle number, TO:0000592 - 1000-dehulled grain weight, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000402 - grain width, TO:0000424 - brown planthopper resistance, TO:0000734 - grain length, TO:0000259 - heat tolerance, TO:0000382 - 1000-seed weight, TO:0002653 - endosperm storage protein content, TO:0000397 - grain size, TO:0000391 - seed size, TO:0000396 - grain yield, TO:0002731 - grain length to width ratio, TO:0000146 - seed length, TO:0000162 - seed quality, TO:0002730 - grain shape	PO:0009049 - inflorescence , PO:0009010 - seed 
2136	AN7	An7(t), An7(t)*	AWN 7	Awn 7(t), Awn-7		An7-glum	5	Dominant gene for awnness, obtained from Australian wild rice Oryza meridionalis. This gene is located on chromosome 5 flanked by RFLP markers Y1060 (1.0cM) and C249 (5.8cM). PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061160			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2137	AN8	An8(t), An8(t)*, An8	AWN 8	Awn8(t), Awn-8		An8-glum	4	Dominant gene for awnness, obtained from Australian wild rice Oryza meridionalis. This gene is located on chromosome 4 flanked by RFLP markers XNpb237 (1.0cM) and C891 (5.3cM). PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061161			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2138	ARE1	are1	ABERRANT REGIONALIZATION OF EMBRYO	aberrant regionalization of embryo, aberrant regionalization of embryo-1			9	are1 embryo develops two shoots during embryogenesis. PO:0009009; embryo.	 Seed - Morphological traits - Embryo			GR:0061162				TO:0000064 - embryo related trait	PO:0009009 - plant embryo 
2139	RHZ2	Rhz2	RHIZOME GENE 2	Rice rhizome gene 2, Rhizomatous from O. longistaminata-2			3	Dominant complementary gene with Rhz3, which develops a rhyzome. Originally the gene existed in O. longistaminata. This gene was located on chromosome 3 flanked by SSR markers, OSR16(1.3cM) and OSR13(8.1cM). PO:0009005; root.	 Vegetative organ - Root			GR:0061183			GO:0007275 - multicellular organismal development	TO:0000257 - root branching	PO:0009005 - root 
2140	RHZ3	Rhz3	RHIZOME GENE 3	Rice rhizome gene 3, Rhizomatous from O. longistaminata-3			4	Dominant complementary gene with Rhz2, which develops a rhizome. Originally the gene exists in Oryza longistaminata. This gene was located on chromosome 4 flanked by SSR markers, RM119 (2.2cM) and RM273 (7.4cM). PO:0009005; root.	 Vegetative organ - Root			GR:0061184			GO:0007275 - multicellular organismal development	TO:0000257 - root branching	PO:0009005 - root 
2141	S26	S26(t), S26(t)*	HYBRID STERILITY 26	Hybrid sterility 26, F1 sterility-26			6	F1 sterility gene in japonica/indica cross. There is a possibility that S26(t) is allelic to S5. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0061172			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2142	S25	S25(t), S25(t)*	HYBRID STERILITY 25	Hybrid sterility 25, F1 pollen semi-sterility-25, F1 pollen sterility 25		S25-IR24, S25-Asominori	12	This gene causes F1 pollen sterility in japonica/indica cross. PO:0009046; flower. The pollen sterility gene S25 completely segregated with the marker G193 and was located between G24 and G189, with map distances of 1.4 cM and 5.5 cM, respectively (Win et al. 2009). Two F1 pollen sterility loci, designated S36 and S25 might be the same locus. However, we tentatively named the F1 pollen sterility locus detected in the hybrid between japonica and O. nivara as S36 to discriminate it from the S25 locus found in the hybrid between japonica and indica(Win et al. 2009).  Having a similar map position and same genetic activity, S25, S36, S39, qS12, and Se might therefore be multiple alleles on the same locus responsible for hybrid sterility in rice (Li et al. 2020). 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0061171			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0009046 - flower 
2143	SPL12	spl12(t), spl12(t)*	SPOTTED LEAF 12	spotted leaf 12, spotted leaf-12			2	This gene shows spotted, drooping and somewhat yellowish green leaves at seedling stage. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Lesion mimic			GR:0061176			GO:0006952 - defense response, GO:0015996 - chlorophyll catabolic process	TO:0000063 - mimic response	PO:0000003 - whole plant , PO:0009011 - plant structure 
2145	qLHD3(t)	qlhd3(t)	late heading (QTL)-3(t)	late heading (QTL)-3(t)			2	Recessive late heading gene from O. glumaepatula, significantly delays the days to heading by 12 days under natural daylength conditions. This QTL is located between two RFLP markers, C560 and R759 on the chromosome 2.	 Reproductive organ - Heading date	GR:0061166					GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism		
2146	S27	S27(t), S27(t)*	HYBRID STERILITY 27	Hybrid sterility 27, Pollen semi-sterility-27, F1 pollen sterility 27, F1 pollen sterility gene S27		S27-glum, S27-glums, S27-T65+, S27-niv (s)	8	This gene from O. glumaepatula causes pollen semi-sterility in heterozygotes. Spikelet fertility is normal. Linkage analysis using RFLP markers located near G2132 revealed that S27(t) gene was located between G2132 and L128 (Sobrizal et al. 2001). AB496674. AB576647 (Oryza nivara). A loss-of-function allele of F1 pollen sterility gene S27 in Oryza nivara, S27-nivs is composed of two tandem mitochondrial ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive. S27-glums (O. glumaepatula allele). S27-niv (s) is a loss-of-function allele of S27. S27-niv (s) is composed of two tandem mitochondrial ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive (win et al. 2011).	 Other,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os08g0404200/Os08g0404300 		GR:0061173			GO:0007275 - multicellular organismal development, GO:0009555 - pollen development	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0009046 - flower , PO:0001007 - pollen development stage 
2147	HWF1	hwf1(t), hwf1(t)*, hwf1	HYBRID WEAKNESS F1	hybrid weakness f1, hybrid weakness-f1			4	A complementary gene causes hybrid weakness. Another complementing gene is not yet identified. PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness			GR:0061174			GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development	TO:0000046 - f2-generation sterility	PO:0009046 - flower 
2148	XA25	Xa25(t), Xa25*, Xa25, Xa-25(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 25	Xanthomonas oryzae pv. oryzae resistance 25, Xanthomonas oryzae pv. oryzae resistance-25, Xanthomonas campestris pv. oryzae resistance-25				Resistant to bacterial blight disease. a bacterial blight resistance gene in HX-3. Xa-25(t) gene was located between the markers with 5.3 cM and 23.7 cM to S1269 and S1327, respectively (Gao et al. 2001).	 Tolerance and resistance - Disease resistance			GR:0061188			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
2149	PI24	Pi24, Pi24(t)	PYRICULARIA ORYZAE RESISTANCE 24	Pyricularia oryzae resistance 24, Magnaporthe grisea resistance-24, Blast resistance 24			12	Leaf blast resistance. PO:0009025; leaf. Resistant to blast isolate 92-183 (race ZC15) at the vegetative stage only. Original line is Zhong 156.	 Tolerance and resistance - Disease resistance			GR:0061185		10.3	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
2150	PI25	Pi25, Pi25(t)	PYRICULARIA ORYZAE RESISTANCE 25	Pyricularia oryzae resistance 25, Magnaporthe grisea resistance-25, Blast resistance 25			6	Leaf and neck blast resistance. PO:0009025; leaf. Original line is Gumei 2. Resistant to blast isolate 92-183 (race ZC15) at both the vegetative and reproductive stages. Original line is Gumei2 (Indica). Map position (63.2-64.6 cM).	 Tolerance and resistance - Disease resistance			GR:0061186		63.2	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
2151	OVL	ovl	OVULELESS	ovuleless				About 85% of matured pistils have no ovule and cause seed sterility (ca 87%) though the stamens are normal. Regarded as a female sterility. PO:0009062; gynoecium.	 Reproductive organ - Pollination, fertilization, fertility - Other sterilities			GR:0061318			GO:0007275 - multicellular organismal development	TO:0000358 - female sterility	PO:0009062 - gynoecium 
2152	ADS	ads	ADAXIAL SNOWY LEAF	adaxial snowy leaf		ads		Adaxial surface of leaf blade is whitish, but the abaxial surface is normal green. PO:0009025; leaf.	 Coloration - Chlorophyll			GR:0061295			GO:0015995 - chlorophyll biosynthetic process	TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
2153	NK2	nk2(t), nk2	NOTCHED KERNEL 2	notched kernel-2(t), notched kernel 2			5	These kernels are wrinkled, brownish and white-cored, and notched at the belly. Originally introduced from O. glumaepatula. The gene nk2 was mapped between RFLP markers G1103 and R521 on the long arm of chromosome 5, with map distances of 3.5 cM and 3.6 cM, respectively.	 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
2154	NK	Nk	NOTCHED KERNEL	Notched kernel			5	PO:0009010; seed.	 Seed - Morphological traits - Grain shape			GR:0061309			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape	PO:0009010 - seed 
2155	ISH3	iSh3, iSh3(t)	INHIBITOR FOR SH3-GLA	inhibitor for Sh3-gla			4	Recessive inhibitor gene for seed shattering gene of O. glaberrima, Sh3-gla.	 Seed - Physiological traits - Shattering								
2156	SH5-GLUM	Sh5-glum	SHATTERING	Shattering 5-glu			5	Seed shattering gene found in Oryza glumaepatula. Dominant gene.	 Seed - Physiological traits - Shattering								
2157	SH6-MER	Sh6-mer	SHATTERING	Shattering 6-mer			5	Seed shattering gene found in Oryza meridionalis. Dominant gene.	 Seed - Physiological traits - Shattering								
2158	S28	S28(t), rpl27-3, rpl27, mtRPL27a	POLLEN SEMI-STERILITY 28	Pollen semi-sterility 28(t), mitochondrial ribosomal protein L27, F1 pollen sterility 28	MITOCHONDRIAL RIBOSOMAL PROTEIN L27	S28-glum, S28-glum+, S28-T65, S28-T65s	4	Pollen semi-sterility gene found in the hybrid between O. sativa and O. glumaepatula. AB496675 (Oryza glumipatula mtRPL27a, chr4).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Other	Os04g0321500	LOC_Os04g25540.1				GO:0005739 - mitochondrion, GO:0009555 - pollen development, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0007275 - multicellular organismal development, GO:0005840 - ribosome	TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009066 - anther , PO:0020104 - leaf sheath , PO:0009046 - flower , PO:0001007 - pollen development stage , PO:0025034 - leaf , PO:0009005 - root 
2159	S22	S22(t)	F1 POLLEN SEMI-STERILITY 22	F1 pollen semi-sterility 22(t)			2	Pollen semi-sterility found in the hybrid between O. glumaepatula and O. sativa. S29(t) closely corresponded to S22 which is also a pollen killer gene in O. glumaepatula (Hu et al. 2006). S29(t) closely corresponded to S22 which is also a pollen killer gene in O. glumaepatula (Hu et al. 2006). Linkage analysis by SSR markers revealed that S22(t) was located between RM12317 and RM279 with genetic map distances of 0.32 cM and 0.99 cM, respectively (Sakata et al. 2014). The S22(t) region was found to be composed of two loci, designated S22A and S22B, that independently induce F1 pollen sterility (Sakata et al 2014).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	
2160	S23	S23(t)	F1 POLLEN SEMI-STERILITY 23	F1 pollen semi-sterility 23(t)			7	Pollen semi-sterility found in the hybrid between O. sativa and O. glumaepatula. S23 identified from O. glumaepatula was allelic to S21-gla (Miyazaki et al. 2007). S23 locus was pinpointed to an interval between MM3659 and PSM147 containing three putative genes: ORF4 (Os07g0646500), ORF3 (Os07g0646600) and ORF5 (Os07g0646700). S23 was allelic with qHMS7, and S23-ORF3 was identical to qHMS7-ORF3 (Fang et al. 2019).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000437 - male sterility, TO:0000042 - f1-hybrid incompatibility	
2161	S24	S24(t), S24(t)*, Sb, F5-Du	F1 POLLEN STERILITY 24	F1 pollen sterility 24(t), F1 pollen sterility-24, Hybride male sterility 24		S24-j, S24-i, S24-as, S24-ir	5	F1 pollen sterility found in the japonica and indica hybrid. S24 was located between R830 and R3166 with a distance of 1.4 and 2.8 cM, respectively. S35 gene might function as a modifier of S24. S24, f5-Du, Sb mapped to the same region.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060833			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
2162	GM8	Gm8(t), Gm8	GALL MIDGE RESISTANCE 8	Gall midge resistance 8(t), Gall midge resistance 8, Gall midge resistance-8			8	Gall midge resistance gene, being located on chromosome 8 between AFLP markers AR257 and AS168. PO:0009011; plant structure ; PO:0000003; whole plant. The gene Gm8 was mapped to chromosome 8 within a 400-kbp region, and the SSR markers RM22685 and RM22709 flank the gene closely.	 Tolerance and resistance - Insect resistance			GR:0061088			GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
2163	qBPH-12	qBPH-12	QTL of brown planthopper resistance-12	brown planthopper resistance (QTL)-12			12	QTL for brown planthopper resistance.	 Tolerance and resistance - Insect resistance								
2164	qGRH-2	qGRH-2	Green rice leafhopper resistance (QTL)-2	Green rice leafhopper resistance (QTL)-2			2	QTL for green rice leafhopper resistance, located between two markers, C621 and C601 on the chromosome 2.	 Tolerance and resistance - Insect resistance								
2165	qGRH-4	qGRH-4	Green rice leafhopper resistance (QTL)-4	Green rice leafhopper resistance (QTL)-4			4	QTL for green rice leafhopper resistance, located between two markers, R288 and XNpb311 on the chromosome 4. It is also located near the resistance gene for green leafhopper.	 Tolerance and resistance - Insect resistance								
2166	qGRH-5	qGRH-5	Green rice leafhopper resistance (QTL)-5	Green rice leafhopper resistance (QTL)-5			5	QTL for green rice leafhopper resistance, located between two markers, C569 and C309 on the chromosome 5. This appears to coincide with gene Grh1.	 Tolerance and resistance - Insect resistance								
2167	qGRH-6	qGRH-6	Green rice leafhopper resistance (QTL)-6	Green rice leafhopper resistance (QTL)-6			6	QTL for green rice leafhopper resistance, located between two markers, XNpb386 and Ky11 on the chromosome 6.  This appears to coincide with gene Grh3.	 Tolerance and resistance - Insect resistance								
2168	qGRH-11	qGRH-11	Green rice leafhopper resistance (QTL)-11	Green rice leafhopper resistance (QTL)-11			11	QTL for green rice leafhopper resistance, located between two markers, C1172 and C1465 on the chromosome 11. This appears to coincide with gene Grh2.	 Tolerance and resistance - Insect resistance								
2169	qGRH-3	qGRH-3	Green rice leafhopper resistance (QTL)-3	Green rice leafhopper resistance (QTL)-3			3	QTL for green rice leafhopper resistance, located between two markers, XNpb144 and C1351 on the chromosome 3. This appears to coincide with gene Grh4.	 Tolerance and resistance - Insect resistance								
2170	HSA1A	hsa1(t), s(t), hst49	F2 STERILITY-1	F2 sterility-1(t)	DUF1618 DOMAIN PROTEIN	hsa1-IR	12	This gene causes F2 sterility complementarily with hsa2(t) in the cross between japonica and indica cross. hsa1 locus contains two interacting genes, HSA1a and HSA1b, within a 30-kb region (Kubo et al. 2016). LC066597(cDNA accession, IR24, indica).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os12g0589400	LOC_Os12g39880.1	GR:0061092			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
2171	qSH-1-1(t) (QSh1)	qSH-1-1(t) (QSh1)	Shattering (QTL)-1-1(t)	Shattering (QTL)-1-1(t)			1	Seed shattering QTL gene, located between two markers, C131 and RG472 on the chromosome 1.	 Seed - Physiological traits - Shattering								
2172	qSH-2-1(t) (QSh2)	qSH-2-1(t) (QSh2)	Shattering (QTL)-2-1(t)	Shattering (QTL)-2-1(t)			2	Seed shattering QTL gene, located between two markers, KG139 and C624x on the chromosome 2.	 Seed - Physiological traits - Shattering								
2173	qSH-3-1(t) (QSh3)	qSH-3-1(t) (QSh3)	Shattering (QTL)-3-1(t)	Shattering (QTL)-3-1(t)			3	Seed shattering QTL gene, located in the neighbor of the marker RG418 on the chromosome 3.	 Seed - Physiological traits - Shattering								
2174	qSH-4-1(t) (QSh4)	qSH-4-1(t) (QSh4)	Shattering (QTL)-4-1(t)	Shattering (QTL)-4-1(t)			4	Seed shattering QTL gene, located between two markers, RG449 and RZ69 on the chromosome 4.	 Seed - Physiological traits - Shattering								
2175	qSH-5-1(t) (QSh5)	qSH-5-1(t) (QSh5)	Shattering (QTL)-5-1(t)	Shattering (QTL)-5-1(t)			5	Seed shattering QTL gene, located between two markers, Y1049 and R569a on the chromosome 5.	 Seed - Physiological traits - Shattering								
2177	qSH-9-1(t) (QSh9)	qSH-9-1(t) (QSh9)	Shattering (QTL)-9-1(t)	Shattering (QTL)-9-1(t)			9	Seed shattering QTL gene, located between two markers, RG451 and RZ404 on the chromosome 9.	 Seed - Physiological traits - Shattering								
2178	qRF-1(t)	qRf-1(t)	Fertility restoration (QTL)-1(t)	Fertility restoration (QTL)-1(t)			1	Fertility restorer QTL, located between two markers, RG532 and RG472 on the chromosome 1.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2179	qRF-7(t)	qRf-7(t)	Fertility restoration (QTL)-7(t)	Fertility restoration (QTL)-7(t)			7	Fertility restorer QTL, located between two markers, RZ395 and RZ989  on the chromosome 7.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2180	qRF-10(t)	qRf-10(t)	Fertility restoration (QTL)-10(t)	Fertility restoration (QTL)-10(t)			10	Fertility restorer QTL, located between two markers, RZ811 and RG561 on the chromosome 10.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2181	qRF-11(t)	qRf-11(t)	Fertility restoration (QTL)-11(t)	Fertility restoration (QTL)-11(t)			11	Fertility restorer QTL, located between two markers, RG118 and RG167 on the chromosome 11.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
2182	qOVA1-3	qOVA1-3, qOVA-1-3(t)	Whitebacked planthopper resistance (QTL)-1-3(t)　ovicidal response to the WBPH by watery lesion	Whitebacked planthopper resistance (QTL)-1-3(t)　ovicidal response to the WBPH by watery lesion			1	Whitebacked planthoppder resistant QTL on the chromosome 1 due to egg killing effect.	 Tolerance and resistance - Insect resistance								
2183	qOVA5-1	qOVA5-1, qOVA-5-1(t)	Whitebacked planthopper resistance (QTL)-5-1(t)ovicidal response to the WBPH by watery lesion	Whitebacked planthopper resistance (QTL)-5-1(t)ovicidal response to the WBPH by watery lesion			5	Whitebacked planthopper resistant QTL on the chromosome 5 due to egg killing effect.	 Tolerance and resistance - Insect resistance								
2184	qOVA-5-2(t)	qOVA-5-2(t)	Whitebacked planthopper resistance (QTL)-5-2(t)	Whitebacked planthopper resistance (QTL)-5-2(t)			5	Whitebacked planthopper resistant QTL on the chromosome 5 due to egg killing effect.	 Tolerance and resistance - Insect resistance								
2185	RPR1-1	Rpr1-1(t)	PR-1 PROTEIN 1	PR-1 protein-1(t)	PR-1 PROTEIN 1		1	PR-1 is one of the pathogenesis-related proteins in plants.	 Biochemical character						GO:0009405 - pathogenesis		
2186	RPR1-2	Rpr1-2(t), Rpr1-2	PR-1 PROTEIN 2	PR-1 protein-2(t)	PR-1 PROTEIN 2		5	PR-1 is one of the pathogenesis-related proteins in plants. Rice pathogenesis-related protein.	 Biochemical character			GR:0060781			GO:0009405 - pathogenesis		
2187	TSC1	tsc1(t), tsc-1, TSC-1	THERMO-SENSITIVE SEEDLING COLOR 1	thermo-sensitive seedling color-1(t), thermo-sensitive seedling-colour 1			11	Seedling color is white to light green under low temperature but becomes normal green with the progress of growth. PO:0000003; whole plant ; PO:0009025; leaf.	 Coloration - Chlorophyll			GR:0061078			GO:0009409 - response to cold, GO:0015994 - chlorophyll metabolic process, GO:0015975 - energy derivation by oxidation of reduced inorganic compounds, GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000432 - temperature response trait	PO:0009025 - vascular leaf , PO:0000003 - whole plant 
2188	RRL1	rrl1(t), rrl1	REDUCED ROOT LENGTH 1	reduced root length1(t), reduced root length 1, reduced root length-1				Seminal root length is significantly shorter than that of the wild type. Both shoot growth and rooting ability of the lateral roots are poorer and lower. PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Root			GR:0061068			GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0000227 - root length	PO:0009005 - root 
2189	RRL2	rrl2(t), rrl2	REDUCED ROOT LENGTH 2	reduced root length2(t), reduced root length 2, reduced root length-2		rrl2-1, rrl2-2, rrl2-3		Seminal root length is significantly shorter than that of the wild type. Seminal roots are thinner and branching density of the lateral roots higher than those of the wild type. PO:0020144; apical meristem ; PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Root			GR:0061069			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth	TO:0000227 - root length	PO:0009005 - root , PO:0020144 - apical meristem 
2190	qBFR4-1(t)	qBFR4-1(t)	Blast field resistance(QTL)4-1(t)	Blast field resistance(QTL)4-1(t)			4	Blast field resistance QTL on the chromosome 4.	 Tolerance and resistance - Disease resistance								
2191	qBFR4-2(t)	qBFR4-2(t)	Blast field resistance(QTL)4-2(t)	Blast field resistance(QTL)4-2(t)			4	Blast field resistance QTL on the chromosome 4.	 Tolerance and resistance - Disease resistance								
2193	qLTG-2-1(t)	qLTG-2-1(t)	Low temperature germinability (QTL)-2(t)	Low temperature germinability (QTL)-2(t)			2	Low temperature germinability QTL on the chromosome 2, nearest marker being G1327.	 Tolerance and resistance - Stress tolerance								
2194	qLTG-4-1(t)	qLTG-4-1(t)	Low temperature germinability (QTL)-4-1(t)	Low temperature germinability (QTL)-4-1(t)			4	Low temperature germinability QTL on the chromosome 4.	 Tolerance and resistance - Stress tolerance								
2195	qLTG-4-2(t)	qLTG-4-2(t)	Low temperature germinability (QTL)-4-2(t)	Low temperature germinability (QTL)-4-2(t)			4	Low temperature germinability QTL on the chromosome 4.	 Tolerance and resistance - Stress tolerance								
2196	qLTG-5(t)	qLTG-5(t)	Low temperature germinability (QTL)-5(t)	Low temperature germinability (QTL)-5(t)			5	Low temperature germinability QTL on the chromosome 5.	 Tolerance and resistance - Stress tolerance								
2197	qLTG-11(t)	qLTG-11(t)	Low temperature germinability (QTL)-11(t)	Low temperature germinability (QTL)-11(t)			11	Low temperature germinability QTL on the chromosome 11 in the vicinity of marker G1465, or flanked by markers XNpb389and XNpb181.	 Tolerance and resistance - Stress tolerance								
2198	RSUS1	sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2, OsRSUS1	SUCROSE SYNTHASE 1	sucrose synthase1, Sucrose synthase 1, Sucrose synthase 2, Sucrose-UDP glucosyltransferase 1, Sucrose synthase-2, rice SuSy gene 2, sucrose-UDP glucosyltransferase isozyme 2	SUCROSE SYNTHASE 1		3	EC=2.4.1.13 P31924. X59046. D10418 (partial cds). D29733. HQ895719. BGIOSGA010570. TO:0000845: collective phyllome structure morphology trait. a candidate gene for qCo3.1(QTL for Co concentration).	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os03g0401300	LOC_Os03g28330.1, LOC_Os03g28330.2, LOC_Os03g28330.5, LOC_Os03g28330.4, LOC_Os03g28330.3	GR:0061130			GO:0016157 - sucrose synthase activity, GO:0009058 - biosynthetic process, GO:0005985 - sucrose metabolic process, GO:0009409 - response to cold, GO:0010037 - response to carbon dioxide, GO:0005773 - vacuole, GO:0006970 - response to osmotic stress, GO:0005886 - plasma membrane, GO:0009413 - response to flooding, GO:0051781 - positive regulation of cell division, GO:0051707 - response to other organism, GO:0046686 - response to cadmium ion	TO:0000592 - 1000-dehulled grain weight, TO:0000396 - grain yield, TO:0000449 - grain yield per plant, TO:0000696 - starch content, TO:0000590 - grain weight	
2199	RSUS2	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1, OsSusy2, Susy2, OsRSUS1, RSUS1	SUCROSE SYNTHASE 2	sucrose synthase2, Sucrose synthase 2, Sucrose synthase 1, Sucrose-UDP glucosyltransferase 2, Sucrose synthase-1, rice SuSy gene 1, sucrose-UDP glucosyltransferase isozyme 1, sucrose synthase l, rice sucrose synthase-1	SUCROSE SYNTHASE 2		6	EC=2.4.1.13 P30298. X64770, Z15028. L39940. JQ733914 (promoter sequence). D39365, AU163158, AU174192. D29732. OsRSUS1 in Yoo et al. 2023. TO:0000845: collective phyllome structure morphology trait.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Morphological traits,  Biochemical character	Os06g0194900	LOC_Os06g09450.2, LOC_Os06g09450.8, LOC_Os06g09450.7, LOC_Os06g09450.6, LOC_Os06g09450.3, LOC_Os06g09450.1, LOC_Os06g09450.4, LOC_Os06g09450.5	GR:0061129			GO:0009408 - response to heat, GO:0005985 - sucrose metabolic process, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0005773 - vacuole, GO:0051781 - positive regulation of cell division, GO:0009555 - pollen development, GO:0009413 - response to flooding, GO:0016157 - sucrose synthase activity, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009058 - biosynthetic process	TO:0000696 - starch content, TO:0000590 - grain weight, TO:0000286 - submergence sensitivity, TO:0000592 - 1000-dehulled grain weight, TO:0000396 - grain yield, TO:0000432 - temperature response trait, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	PO:0001007 - pollen development stage , PO:0007632 - seed maturation stage 
2200	RSUS3	RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111, Susy3, OsSusy3	SUCROSE SYNTHASE 3	Rice sucrose synthase-3(t), Sucrose synthase 3, Sucrose-UDP glucosyltransferase 3, Sucrose synthase-3, rice SuSy gene 3, endosperm-specific gene 111	SUCROSE SYNTHASE 3		7	EC=2.4.1.13 Q43009. L03366. GO:2001006: regulation of cellulose biosynthetic process. GO:0140013: meiotic nuclear division. TO:0000845: collective phyllome structure morphology trait. GO: 2001009: regulation of plant-type cell wall cellulose biosynthetic process. TO:0000975: grain width.	 Seed - Morphological traits,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Endosperm,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0616800	LOC_Os07g42490.2, LOC_Os07g42490.1	GR:0061131			GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0009413 - response to flooding, GO:0009058 - biosynthetic process, GO:0006970 - response to osmotic stress, GO:0052324 - cell wall cellulose biosynthetic process, GO:0005985 - sucrose metabolic process, GO:0009873 - ethylene mediated signaling pathway, GO:0009409 - response to cold, GO:0030244 - cellulose biosynthetic process, GO:0010410 - hemicellulose metabolic process, GO:0010581 - regulation of starch biosynthetic process, GO:0048316 - seed development, GO:0009555 - pollen development, GO:0016157 - sucrose synthase activity, GO:0009723 - response to ethylene stimulus, GO:0051321 - meiotic cell cycle, GO:0051781 - positive regulation of cell division, GO:0005773 - vacuole, GO:0009960 - endosperm development, GO:0010229 - inflorescence development	TO:0000696 - starch content, TO:0000396 - grain yield, TO:0000068 - lodging incidence, TO:0000173 - ethylene sensitivity, TO:0000391 - seed size, TO:0000457 - total biomass yield, TO:0000575 - endosperm related trait, TO:0000590 - grain weight, TO:0000449 - grain yield per plant, TO:0000734 - grain length, TO:0000114 - flooding related trait, TO:0000653 - seed development trait, TO:0000592 - 1000-dehulled grain weight, TO:0000621 - inflorescence development trait, TO:0000397 - grain size	PO:0007633 - endosperm development stage , PO:0009089 - endosperm , PO:0001007 - pollen development stage , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
2202	TF1	OSTF1(t), OsTF1, OsHDZ3, OsHDZIP3, HDZ3, HDZIP3	TRANSCRIPTION FACTOR 1	Oryza sativa transcription factor 1(t), Homeobox-leucine zipper protein TF1, Homeodomain transcription factor TF1, HD-ZIP protein TF1, Protein TRANSCRIPTION FACTOR 1, homeodomain-leucine zipper transcription factor 3, OsHDZIP transcription factor 3	TRANSCRIPTION FACTOR 1		1	Q5ZAY0. This gene encodes a homeodomain protein in rice. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:0060992: response to fungicide.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os01g0788800	LOC_Os01g57890.1, LOC_Os01g57890.2				GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009753 - response to jasmonic acid stimulus, GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding	TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009005 - root 
2203	qAL-1(t)	qAl-1(t)	Aluminum tolerance (QTL)-1(t)	Aluminum tolerance (QTL)-1(t)			1	Aluminum tolerance QTL, located between two markers, C86 and R2625 on the chromosome 1.	 Tolerance and resistance - Stress tolerance								
2204	qAL-2(t)	qAl-2(t)	Aluminum tolerance (QTL)-2(t)	Aluminum tolerance (QTL)-2(t)			2	Aluminum tolerance QTL, located between two markers, R2510 and R2460 on the chromosome 2.	 Tolerance and resistance - Stress tolerance								
2205	qAL-6(t)	qAl-6(t)	Alminum tolerance (QTL)-6(t)	Alminum tolerance (QTL)-6(t)			6	Aluminum tolerance QTL, located between two markers, S1520 and G200 on the chromosome 6.	 Tolerance and resistance - Stress tolerance								
2206	RPP16	Rpp16(t), ERG3, OsERG3, OsC2DP36, C2DP36	PHLOEM PROTEIN 16	Elicitor-responsive protein 3, 16 kDa phloem protein, C2 Domain-Containing Protein 36	PHLOEM PROTEIN 16		4	Rpp16 is predominantly expressed in phloem tissues and is likely to be involved in phloem development and/or function. rice phloem protein. Q0JBH9(japonica), Q25AG5(indica). AF090698.	 Biochemical character	Os04g0531100	LOC_Os04g44870.1				GO:0006952 - defense response, GO:0010088 - phloem development, GO:0046872 - metal ion binding, GO:0005737 - cytoplasm		
2207	RPP17	Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b, OsC2DP8, C2DP8	PHLOEM PROTEIN 17	Elicitor-responsive protein 1, Fungal elicitor immediate early-responsive gene 1 protein, 17 kDa phloem protein, C2 Domain-Containing Protein 8	PHLOEM PROTEIN 17		1	Rpp17 is predominantly expressed in the phloem tissues as Rpp16. rice phloem protein. A2WWV5(indica), Q0JHU5(japonica). U95135, U95136, AF512505. up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0841700	LOC_Os01g62430.1, LOC_Os01g62430.2, LOC_Os01g62430.3				GO:0005544 - calcium-dependent phospholipid binding, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0009790 - embryonic development, GO:0010088 - phloem development, GO:0005509 - calcium ion binding, GO:0006952 - defense response, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
2208	SUT2	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5	SUCROSE TRANSPORTER 2	sucrose transporter2(t), Sucrose transport protein 2, Sucrose permease 2 ; Sucrose-proton symporter 2, Sucrose transporter 2, Sucrose transporter-2, SUC4-like protein, sucrose transporter 2M	SUCROSE TRANSPORTER 2	ossut2	12	AB091672. A2ZN77(indica). Q0ILJ3(japonica). PO:0000003; whole plant. DQ072592. HQ540307. OsSUT5 in Lu et al. 2017.	 Vegetative organ - Culm,  Biochemical character,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os12g0641400	LOC_Os12g44380.1, LOC_Os12g44380.2, LOC_Os12g44380.3	GR:0061316			GO:0002215 - defense response to nematode, GO:0015293 - symporter activity, GO:0008515 - sucrose transmembrane transporter activity, GO:0008519 - ammonium transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0055085 - transmembrane transport, GO:0010431 - seed maturation, GO:0016020 - membrane, GO:0015770 - sucrose transport, GO:0009960 - endosperm development	TO:0000401 - plant growth hormone sensitivity, TO:0000207 - plant height, TO:0000333 - sugar content, TO:0000384 - nematode damage resistance, TO:0000397 - grain size, TO:0000696 - starch content, TO:0000447 - filled grain number	PO:0007632 - seed maturation stage , PO:0000003 - whole plant , PO:0007633 - endosperm development stage 
2209	SUT3	OsSUT3(t), OsSUT3, SUC3, OsSUT2	SUCROSE TRANSPORTER 3	sucrose transporter3(t)	SUCROSE TRANSPORTER 3		10	AB071809, AF419298. Q948L0. Q944W2. Sequence alignment of OsSUT2 is identical to that of OsSUT3 (accession no. AB071809 by Hirose et al) (Ngampanya et al. 2002). OsSUT2 in Ngampanya et al. 2002.	 Biochemical character	Os10g0404500	LOC_Os10g26470.1				GO:0005985 - sucrose metabolic process, GO:0008643 - carbohydrate transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0008515 - sucrose transmembrane transporter activity, GO:0015293 - symporter activity, GO:0015770 - sucrose transport		
2210	SUT4	OsSUT4(t), OsSUT4	SUCROSE TRANSPORTER 4	sucrose transporter4(t)	SUCROSE TRANSPORTER 4		2	AB091673. Q6YK44.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0827200	LOC_Os02g58080.1				GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0009611 - response to wounding, GO:0005985 - sucrose metabolic process, GO:0015770 - sucrose transport, GO:0005886 - plasma membrane, GO:0008643 - carbohydrate transport, GO:0002215 - defense response to nematode, GO:0008515 - sucrose transmembrane transporter activity	TO:0000432 - temperature response trait, TO:0000384 - nematode damage resistance	
2211	SUT5	OsSUT5(t), OsSUT5Z, OsSUT5	SUCROSE TRANSPORTER 5	sucrose transporter5(t), sucrose transporter 5Z	SUCROSE TRANSPORTER 5		2	AB091674. DQ072593. Q69JW3. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0576600	LOC_Os02g36700.1				GO:0002215 - defense response to nematode, GO:0008506 - sucrose:hydrogen symporter activity, GO:0009555 - pollen development, GO:0015770 - sucrose transport, GO:0005887 - integral to plasma membrane, GO:0042950 - salicin transmembrane transporter activity, GO:0042951 - arbutin transmembrane transporter activity, GO:0005364 - maltose:hydrogen symporter activity, GO:0008515 - sucrose transmembrane transporter activity	TO:0000384 - nematode damage resistance, TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
2213	CPM1	cpm1(t)	LONG COLEOPTILE 1	long coleoptile1(t)				A long coleoptile under white light.	 Vegetative organ - Leaf						GO:0009640 - photomorphogenesis		
2215	ALDP	Aldo, OsALDO, ALDO, FBAase, OsFBAase, ALDOA, OsALDOA	CHLOROPLAST ALDOLASE	"chloroplast aldolase, \"Fructose-bisphosphate aldolase, chloroplastic\", \"aldolase, fructose-1, 6-bisphosphate aldolase\""	CHLOROPLAST ALDOLASE		11	This codes for chloroplast aldolase. Expression of this gene is mesophyll cell-specific and is under the control of leaf cell differentiation. Q40677. D13513.	 Biochemical character	Os11g0171300	LOC_Os11g07020.7, LOC_Os11g07020.1, LOC_Os11g07020.4, LOC_Os11g07020.5, LOC_Os11g07020.6				GO:0009507 - chloroplast, GO:0006096 - glycolysis, GO:0009609 - response to symbiotic bacterium, GO:0016832 - aldehyde-lyase activity, GO:0009536 - plastid, GO:0004332 - fructose-bisphosphate aldolase activity, GO:0005737 - cytoplasm		
2216	ALDCA	AldC-a	CYTOPLAST ALDOLASE A	cytoplast aldolase-a, aldolase isozyme C-a, aldolase C-a, cytoplasmic aldolase C-a	CYTOPLAST ALDOLASE A			This codes cytoplasmic aldolase. D13512.	 Biochemical character						GO:0016832 - aldehyde-lyase activity		
2217	ALDC1	AldC-1	CYTOPLAST ALDOLASE 1	cytoplast aldolase-1, aldolase isozyme C-1, aldolase C-1, cytoplasmic aldolase C-1	CYTOPLAST ALDOLASE 1		1	This codes cytoplasmic aldolase. D50301, D50307. D16040, D15610. LOC_Os01g67860. Fructose-bisphosphate aldolase. GO:0080167: response to larrikin. The gene (LOC_Os01g67860) appears to be a strong candidate for grain yield under drought underlying QTL qDTY1.1. (Torah et al. 2017).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0905800	LOC_Os01g67860.1				GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0005730 - nucleolus, GO:0005774 - vacuolar membrane, GO:0005740 - mitochondrial envelope, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0016832 - aldehyde-lyase activity, GO:0009506 - plasmodesma, GO:0004332 - fructose-bisphosphate aldolase activity, GO:0006096 - glycolysis, GO:0005618 - cell wall		
2218	ALDC2	AldC-2	CYTOPLAST ALDOLASE 2	cytoplast aldolase-2	CYTOPLAST ALDOLASE 2			This codes cytoplasmic adolase.	 Biochemical character								
2219	ADL1	OsADL1	ADAXIALIZED LEAF 1	adaxialized leaf-1, ADAXIALIZED LEAF1, shootless 3, Dek1-calpain-like protein		adl1, adl1-1 to adl1-3, adl1-s1, adl1-s2, adl1-g1, and adl1-g2, shl3, shl3-1, shl3-2, odm 63, odm 78	2	AB477099. AY062272. It is dwarf and its leaves are rolled in reverse direction (abaxial side becomes indide) and frequently twisted. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage. a plant-specific calpain-like cysteine proteinase orthologous to maize DEFECTIVE KERNEL1. a predicted lethal-phenotype gene in Lloyd et al. 2015. TO:0006064: rolled leaf.	 Biochemical character,  Vegetative organ - Leaf	Os02g0709400	LOC_Os02g47970.1	GR:0060014			GO:0009955 - adaxial/abaxial pattern formation, GO:0001708 - cell fate specification, GO:0004198 - calcium-dependent cysteine-type endopeptidase activity, GO:0005622 - intracellular, GO:0005886 - plasma membrane, GO:0006508 - proteolysis, GO:0007275 - multicellular organismal development	TO:0000085 - leaf rolling, TO:0000492 - leaf shape, TO:0000576 - stem length	PO:0009047 - stem , PO:0009025 - vascular leaf 
2220	EG2	eg2(t), eg2	EXTRA GLUME 2	extra glume-2				The extra palea looks like a single long empty glume. PO:0009039; glume ; PO:0006318; floret (sensu Poaceae). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0060288			GO:0030154 - cell differentiation	TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009039 - glume , PO:0009082 - spikelet floret 
2221	qDTH-1-1	qDTH-1-1	Days to heading (QTL)-1-1	Days to heading (QTL)-1-1			1	QTL which controls days to heading,<br>located between two markers, G393 and CDO345 on Chromosome 1.	 Reproductive organ - Heading date								
2222	qDTH-2-1	qDTH-2-1	Days to heading (QTL)-2-1	Days to heading (QTL)-2-1			2	QTL which controls days to heading, located between two markers, G45 and BCD880 on the chromosome 2.	 Reproductive organ - Heading date								
2223	qDTH-2-2	qDTH-2-2	Days to heading (QTL)-2-2	Days to heading (QTL)-2-2			2	QTL which controls days to heading, located between two markers, C424 and G39 on the chromosome 2.	 Reproductive organ - Heading date								
2224	qDTH-3-1	qDTH-3-1	Days to heading (QTL)-3-1	Days to heading (QTL)-3-1			3	QTL which controls days to heading, located between two markers, C12 and Pgi1 on the chromosome 3.	 Reproductive organ - Heading date								
2225	qDTH-4-1	qDTH-4-1	Days to heading (QTL)-4-1	Days to heading (QTL)-4-1			4	QTL which controls days to heading, located between two markers, G271 and C174 on the chromosome 4.	 Reproductive organ - Heading date								
2226	qDTH-4-2	qDTH-4-2	Days to heading (QTL)-4-2	Days to heading (QTL)-4-2			4	QTL which controls days to heading, located between two markers, R1427 and RG214 on the chromosome 4.	 Reproductive organ - Heading date								
2227	qDTH-5-1	qDTH-5-1	Days to heading (QTL)-5-1	Days to heading (QTL)-5-1			5	QTL which controls days to heading, located between two markers, RG480 and C246 on the chromosome 5.	 Reproductive organ - Heading date								
2228	qDTH-5-2	qDTH-5-2	Days to heading (QTL)-5-2	Days to heading (QTL)-5-2			5	QTL which controls days to heading, located between two markers, BCD1823 and Bh2 on the chromosome 5.	 Reproductive organ - Heading date								
2229	qDTH-6-1	qDTH-6-1	Days to heading (QTL)-6-1	Days to heading (QTL)-6-1			6	QTL which controls days to heading, located between two markers, Est2 and Pgi2 on the chromosome 6.	 Reproductive organ - Heading date								
2230	qDTH-6-2	qDTH-6-2	Days to heading (QTL)-6-2	Days to heading (QTL)-6-2			6	QTL which controls days to heading, located between two markers, Cat1 and Amp7 on the chromosome 6.	 Reproductive organ - Heading date								
2231	qDTH-8	qDTH-8	Days to heading (QTL)-8	Days to heading (QTL)-8			8	QTL which controls days to heading, located between two markers, G2132 and G187 on the chromosome 8.	 Reproductive organ - Heading date								
2232	qDTH-9-1	qDTH-9-1	Days to heading (QTL)-9-1	Days to heading (QTL)-9-1			9	QTL which controls days to heading, located between two markers, Awn and Est12 on the chromosome 9.	 Reproductive organ - Heading date								
2233	qDTH-9-2	qDTH-9-2	Days to heading (QTL)-9-2	Days to heading (QTL)-9-2			9	QTL which controls days to heading, located in the neighbor of the marker G385 on the chromosome 9.	 Reproductive organ - Heading date								
2234	qDTH-11-1	qDTH-11-1	Days to heading (QTL)-11-1	Days to heading (QTL)-11-1			11	QTL which controls days to heading, located between two markers, RZ141 and Acid2 on the chromosome 11.	 Reproductive organ - Heading date								
2235	qDTH-11-2	qDTH-11-2	Days to heading (QTL)-11-2	Days to heading (QTL)-11-2			11	QTL which controls days to heading, located in the neighbor of marker CDO365 on the chromosome 11.	 Reproductive organ - Heading date								
2236	qDTH-12	qDTH-12	Days to heading (QTL)-12	Days to heading (QTL)-12			12	QTL which controls days to heading, located between two markers, G1112 and RZ257 on the chromosome 12.	 Reproductive organ - Heading date								
2237	qBVP-1	qBVP-1	Basic vegetative phase (QTL)-1	Basic vegetative phase (QTL)-1			1	QTL which controls the basic vegetative phase, located between wo markers, RG345 and G393 on the chromosome 1.	 Reproductive organ - Heading date								
2238	qBVP-3-1	qBVP-3-1	Basic vegetative phase (QTL)-3-1	Basic vegetative phase (QTL)-3-1			3	QTL which controls the basic vegetative phase, located between two markers, C746 and BCD454 on the chromosome 3.	 Reproductive organ - Heading date								
2239	qBVP-3-2	qBVP-3-2	Basic vegetative phase (QTL)-3-2	Basic vegetative phase (QTL)-3-2			3	QTL which controls the basic vegetative phase, located between two markers, G232 and Pgi1 on the chromosome 3.	 Reproductive organ - Heading date								
2240	qBVP-4	qBVP-4	Basic vegetative phase (QTL)-4	Basic vegetative phase (QTL)-4			4	QTL which controls the basic vegetative phase, located in the neighor of the marker G271 on the chromosome 4.	 Reproductive organ - Heading date								
2241	qBVP-5-1	qBVP-5-1	Basic vegetative phase (QTL)-5-1	Basic vegetative phase (QTL)-5-1			5	QTL which controls the basic vegetative phase, located between two markers, BCD738 and Est13 on the chromosome 5.	 Reproductive organ - Heading date								
2242	qBVP-5-2	qBVP-5-2	Basic vegetative phase (QTL)-5-2	Basic vegetative phase (QTL)-5-2			5	QTL which controls the basic vegetative phase, located between two markers, APAGE1 and RG480 on the chromosome 5.	 Reproductive organ - Heading date								
2243	qBVP-8	qBVP-8	Basic vegetative phase (QTL)-8	Basic vegetative phase (QTL)-8			8	QTL which controls the basic vegetative phase, located between two markers, G2132 and G187 on the chromosome 8.	 Reproductive organ - Heading date								
2244	qBVP-11	qBVP-11	Basic vegetative phase (QTL)-11	Basic vegetative phase (QTL)-11			11	QTL which controls the basic vegetative phase, located between two markers, RZ141 and Acid2 on the chromosome 11.	 Reproductive organ - Heading date								
2245	qPSP-1	qPSP-1	Photoperiod sensitive phase (QTL)-1	Photoperiod sensitive phase (QTL)-1			1	QTL which controls the photoperiod sensitive phase, located between two markers, RG345 and RAPDB1-1 on the chromosome 1.	 Reproductive organ - Heading date								
2246	qPSP-6(Se1?)	qPSP-6(Se1?)	Photoperiod sensitive phase (QTL)-6	Photoperiod sensitive phase (QTL)-6			6	QTL which controls the photoperiod sensitive phase, located between two markers, R2171 and RZ144 on the chromosome 6. It is needed to confirm if this QTL might be the same as Se1.	 Reproductive organ - Heading date								
2247	qPSP-11	qPSP-11	Photoperiod sensitive phase (QTL)-11	Photoperiod sensitive phase (QTL)-11			11	QTL which controls the photoperiod sensitive phase, located in the neighbor of the marker C6a on the chromosome 11.	 Reproductive organ - Heading date								
2248	qTA-2	qTA-2	tiller angle (QTL)-2	tiller angle (QTL)-2			2	QTL which controls tiller angle, located between two markers, RG171 and RG437 on the chromosome 2.	 Vegetative organ - Culm								
2249	qTA-1	qTA-1	tiller angle (QTL)-1	tiller angle (QTL)-1			1	QTL which controls tiller angle, located between two markers, RG173 and RG532 on the chromosome 1.	 Vegetative organ - Culm								
2250	qTA-5	qTA-5	tiller angle (QTL)-5	tiller angle (QTL)-5			5	QTL which controls tiller angle, located between two markers, gl-1 and RG403 on the chromosome 5.	 Vegetative organ - Culm								
2251	qTA-8	qTA-8	tiller angle (QTL)-8	tiller angle (QTL)-8			8	QTL which controls tiller angle, located between two markers, RG20 and RG1034 on the chromosome 8.	 Vegetative organ - Culm								
2252	qLA-1	qLA-1	leaf angle (QTL)-1	leaf angle (QTL)-1			1	QTL which controls leaf angle, located between two markers, RG173 and RG532 on the chromosome 1.	 Vegetative organ - Leaf								
2253	qLA-3	qLA-3	leaf angle (QTL)-3	leaf angle (QTL)-3			3	QTL which controls leaf angle, located between two markers, RG104 and RG348 on the chromosome 3.	 Vegetative organ - Leaf								
2254	qFLA-2	qFLA-2	leaf and flag leaf angles (QTL)-2	leaf and flag leaf angles (QTL)-2			2	QTL which controls leaf and flag leaf angles, located between two markers, RZ206 and RG598b on the chromosome 2.	 Vegetative organ - Leaf								
2255	qFLA-5	qFLA-5	leaf and flag leaf angles (QTL)-5	leaf and flag leaf angles (QTL)-5			5	QTL which controls leaf and flag leaf angles, located between two markers, RG470 and RG346 on the chromosome 5,	 Vegetative organ - Leaf								
2256	qFLA-6	qFLA-6	leaf and flag leaf angles (QTL)-6	leaf and flag leaf angles (QTL)-6			6	QTL which controls leaf and flag leaf angles, located between two markers, C and RG424 on the chromosome 6.	 Vegetative organ - Leaf								
2257	qFLA-7	qFLA-7	leaf and flag leaf angles (QTL)-7	leaf and flag leaf angles (QTL)-7			7	QTL which controls leaf and flag leaf angles, located between two markers, RG711 and RZ687 on the chromosome 7.	 Vegetative organ - Leaf								
2258	qFLA-9	qFLA-9	leaf and flag leaf angles (QTL)-9	leaf and flag leaf angles (QTL)-9			9	QTL which controls leaf and flag leaf angles, located between two markers, RG757 and RG463 on the chromosome 9.	 Vegetative organ - Leaf								
2259	qPSP-8	qPSP-8	Photoperiod sensitive phase (QTL)-8	Photoperiod sensitive phase (QTL)-8			8	QTL which controls photoperiod sensitive phase, located between two markers G2132 and G187 on the chromosome 8.	 Reproductive organ - Heading date								
2260	NAC3	OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067, DLN180, OsDLN180	NAC DOMAIN-CONTAINING PROTEIN 3	NAC 3, OsNAC gene-3, ONNAC GENE 3, NAC domain-containing protein 67, DLN repressor 180, DLN motif protein 180	NAC DOMAIN-CONTAINING PROTEIN 3		7	This gene controls the formation of shoot apical mristem, organ separation and flower morphogenesis.  AB028182. Q7EZT1.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Insect resistance	Os07g0225300	LOC_Os07g12340.1	GR:0060582			GO:0003677 - DNA binding, GO:0030912 - response to deep water, GO:0005634 - nucleus, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0009737 - response to abscisic acid stimulus, GO:0002213 - defense response to insect, GO:0009651 - response to salt stress, GO:0045449 - regulation of transcription, GO:0009738 - abscisic acid mediated signaling, GO:0009409 - response to cold, GO:0006350 - transcription	TO:0000172 - jasmonic acid sensitivity, TO:0000205 - white-backed planthopper resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000608 - sodium content, TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0009005 - root 
2261	NAC5	OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009	NAC DOMAIN-CONTAINING PROTEIN 5	NAC 5, NAC domain-containing protein 71, ONNAC GENE 5, OsNAC gene-5, NAC domain-containing protein 9, NAC domain-containing protein 20, OnNAC gene-5	NAC DOMAIN-CONTAINING PROTEIN 5		11	This gene controls the formation of shoot apical meristem, organ separation and flower morphogenesis. AB028184. Q53NF7. JA-responsive SNAC (stress-responsive NAC) factor.  a  senescence-associated ABA-dependent NAC transcription factor.  GO:1901001: negative regulation of response to salt stress. GO:1901141: regulation of lignin biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Character as QTL - Yield and productivity,  Vegetative organ - Shoot apical meristem(SAM),  Biochemical character	Os11g0184900	LOC_Os11g08210.1	GR:0060584			GO:0005634 - nucleus, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0009737 - response to abscisic acid stimulus, GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0010150 - leaf senescence, GO:0045449 - regulation of transcription, GO:0009651 - response to salt stress, GO:0006350 - transcription, GO:0009753 - response to jasmonic acid stimulus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0002661 - seed maturation, TO:0000249 - leaf senescence, TO:0000303 - cold tolerance, TO:0000731 - lignin content, TO:0000172 - jasmonic acid sensitivity, TO:0000153 - relative yield, TO:0000396 - grain yield, TO:0000043 - root anatomy and morphology trait	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
2262	NAC4	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068	NAC DOMAIN-CONTAINING PROTEIN 4	NAC 4, NAC domain-containing protein 68, ONNAC GENE 4, OsNAC gene-4, OnNAC gene-4	NAC DOMAIN-CONTAINING PROTEIN 4		1	This gene controls the formation of shoot apical meristem, organ separation and flower morphogenesis. AB028183. Q52QH4. Overexpression of OsNAC4 leads to hypersensitive response cell death (Kaneda et al. 2009). GO:1902183: regulation of shoot apical meristem development.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Shoot apical meristem(SAM)	Os01g0816100	LOC_Os01g60020.1	GR:0060583			GO:0010446 - response to alkalinity, GO:0002213 - defense response to insect, GO:0009609 - response to symbiotic bacterium, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009617 - response to bacterium, GO:0045449 - regulation of transcription, GO:0034052 - positive regulation of plant-type hypersensitive response, GO:0048439 - flower morphogenesis, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0005634 - nucleus, GO:0009635 - response to herbicide, GO:0010188 - response to microbial phytotoxin, GO:0009266 - response to temperature stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000315 - bacterial disease resistance, TO:0006020 - shoot apical meristem development, TO:0000432 - temperature response trait, TO:0000074 - blast disease, TO:0000481 - alkali sensitivity, TO:0000112 - disease resistance, TO:0000622 - flower development trait, TO:0000058 - herbicide sensitivity, TO:0000205 - white-backed planthopper resistance, TO:0006001 - salt tolerance	PO:0007615 - flower development stage 
2263	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2, OsNAC2	NAC DOMAIN-CONTAINING PROTEIN 6	NAC 6, OsNac gene-6, O. sativa gene with the NAC domain 6, OsNAC6 protein, NAC domain-containing protein 48, stress-responsive NAC transcription factor SNAC2, stress-responsive NAC transcription factor 2	NAC DOMAIN-CONTAINING PROTEIN 6		1	AB028185. AU162697, AU056522. BF889475. Q7F2L3. This gene controls the formation of shoot apical meristem, organ separation and flower morphogenesis. OsNAC2 in Chen et al. 2024. GO:2000280: regulation of root development.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0884300	LOC_Os01g66120.3, LOC_Os01g66120.1	GR:0061485			GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus, GO:0009609 - response to symbiotic bacterium, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0030912 - response to deep water, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0009751 - response to salicylic acid stimulus, GO:0048364 - root development, GO:0030418 - nicotianamine biosynthetic process, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0010033 - response to organic substance, GO:0003677 - DNA binding	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000227 - root length, TO:0000112 - disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000084 - root number, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000524 - submergence tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000043 - root anatomy and morphology trait	PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage 
2264	LHD1	Lhd1(t)	LATE HEADING 1	Late heading1(t)			6	Late heading gene introduced from O. glumaepatula, located in the neighbor of RFLP marker XNpb27 on the chromosome 6.	 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
2265	LHD2	Lhd2(t)	LATE HEADING 2	Late heading2(t)			7	Late heading gene introduced from O. glumaepatula, located between two RFLP markers, C383 and C145  on the chromosome 7.	 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
2266	SK1	sk1(t)**, slk1, sk1*	SLENDER KERNEL 1	slender kernel1(t)**, slender kernel-1			2	slender kernel gene introduced from O. glumaepatula. PO:0009010; seed.	 Seed - Morphological traits - Grain shape			GR:0061469			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape, TO:0000149 - seed width	PO:0009010 - seed 
2267	SK2	Sk2(t)**, Slk2, Sk2*	SLENDER  KERNEL 2	Slender kernel2(t), Slender kernel-2			5	slender kernel gene introduced from O. glumaepatula. Dominant gene. PO:0009010; seed.	 Seed - Morphological traits - Grain shape			GR:0061470			GO:0007275 - multicellular organismal development	TO:0000287 - brown rice shape, TO:0000149 - seed width	PO:0009010 - seed 
2268	AMT1;1	"OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, \"OsAMT1, 1\", OsAMT1.1, AMT1.1, FCO12"	AMMONIUM TRANSPORTER-1;1	"ammonium transporter-1;1, ammonium transporter 1;1, Ammonium transporter 1 member 1, Ammonium transporter-1, ammonium transporter 1-1, \"NH4+ transporter 1, 1\", NH4+ transporter 1, Functioning in Cesium Over-transport 12"	AMMONIUM TRANSPORTER-1;1		4	Q7XQ12. AF289477, AF001505. TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0509600	LOC_Os04g43070.1	GR:0061104			GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane, GO:0009610 - response to symbiotic fungus, GO:0031667 - response to nutrient levels, GO:0007584 - response to nutrient, GO:0008519 - ammonium transmembrane transporter activity, GO:0006995 - cellular response to nitrogen starvation, GO:0016021 - integral to membrane, GO:0009413 - response to flooding, GO:0034059 - response to anoxia, GO:0042594 - response to starvation, GO:0016020 - membrane, GO:0030001 - metal ion transport, GO:0060359 - response to ammonium ion, GO:0010167 - response to nitrate, GO:0009620 - response to fungus, GO:0015696 - ammonium transport, GO:0050832 - defense response to fungus, GO:0009267 - cellular response to starvation, GO:0010104 - regulation of ethylene mediated signaling pathway	TO:0000011 - nitrogen sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000114 - flooding related trait, TO:0000255 - sheath blight disease resistance, TO:0000480 - nutrient sensitivity	PO:0009005 - root 
2269	AMT1;2	"OsAMT1;2, AMT1-2, Osamt1-3, \"OsAMT1, 3\", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2"	AMMONIUM TRANSPORTER-1; 2	"ammonium transporter-1;2, ammonium transporter 1;2, Ammonium transporter 1 member 2, ammonium transporter 1-3, \"NH4+ transporter 1, 3\""	AMMONIUM TRANSPORTER-1; 2	Osamt1-3	2	Q6K9G1. AF289479, AU032209. OsAMT1.3 in Fan et al. 2014, Yang et al. 2014, Zhao et al. 2014, Sun et al. 2018, Phule et al. 2018, Lee et al. 2020, Liu et al. 2023. a candidate gene for qHNA2 (QTL for N accumulation under high N conditions on chromosome 2). GO:1901698: response to nitrogen compound.  GO:0080167:response to karrikin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0620600	LOC_Os02g40730.1				GO:0009413 - response to flooding, GO:0015843 - methylammonium transport, GO:0007584 - response to nutrient, GO:0016020 - membrane, GO:0042594 - response to starvation, GO:0034059 - response to anoxia, GO:0005634 - nucleus, GO:0008519 - ammonium transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0015398 - high affinity secondary active ammonium transmembrane transporter activity, GO:0060359 - response to ammonium ion, GO:0015696 - ammonium transport, GO:0051258 - protein polymerization, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009624 - response to nematode, GO:0009267 - cellular response to starvation	TO:0000450 - grain yield per panicle, TO:0000011 - nitrogen sensitivity, TO:0000114 - flooding related trait	PO:0009005 - root 
2270	AMT1;3	"OsAMT1;3, AMT1-3, Osamt1-2, \"OsAMT1, 2\", OsAMT1;2, OsAMT1.3, AMT1.2"	AMMONIUM TRANSPORTER-1; 3	"ammonium transporter-1;3, ammonium transporter 1;3, Ammonium transporter 1 member 3, ammonium transporter 1-2, \"NH4+ transporter 1, 2\", Ammonium transporter 1;2"	AMMONIUM TRANSPORTER-1; 3	OsAMT1;2-D1, OsAMT1;2-D2, Osamt1-2	2	Q6K9G3. AF289478.OsAMT1.2 in Fan et al. 2014, Zhao et al. 2014, Huang et al. 2018, Sun et al. 2018, Yi et al. 2019, Lee et al. 2020, Liu et al. 2023.  GO:0080167: response to karrikin.  TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. GO:0071705: nitrogen compound transport. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0620500	LOC_Os02g40710.1				GO:0016021 - integral to membrane, GO:0006995 - cellular response to nitrogen starvation, GO:0009737 - response to abscisic acid stimulus, GO:0009413 - response to flooding, GO:0010167 - response to nitrate, GO:0046688 - response to copper ion, GO:0060359 - response to ammonium ion, GO:0015696 - ammonium transport, GO:0005634 - nucleus, GO:0015843 - methylammonium transport, GO:0005886 - plasma membrane, GO:0010157 - response to chlorate, GO:0008519 - ammonium transmembrane transporter activity, GO:0019740 - nitrogen utilization, GO:0055085 - transmembrane transport, GO:0009624 - response to nematode, GO:0042128 - nitrate assimilation, GO:0051258 - protein polymerization, GO:0015398 - high affinity secondary active ammonium transmembrane transporter activity, GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity, TO:0000598 - protein content, TO:0000114 - flooding related trait, TO:0000396 - grain yield, TO:0000021 - copper sensitivity	PO:0025034 - leaf , PO:0009005 - root 
2271	HD9	Hd9(t), qHD9(t)	Heading date (QTL)-9(t)	Heading date (QTL)-9(t)			3	Hd9 introduced into 'Nipponbare' delayed by 7 days compared with the heading of 'Nipponbare' under long day conditions, and 4 days under natural daylength. Under short day conditions, there was no difference.	 Reproductive organ - Heading date								
2272	HD7	Hd7(t), qHD7(t)	Heading date (QTL)-7(t)	Heading date (QTL)-7(t)			2		 Reproductive organ - Heading date								
2274	HD2	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, Os DTH7, OsCCT28, CCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2	Heading date 2	"Heading date (QTL)-2(t), Heading date 2, PSEUDO-RESPONSE REGULATOR 37, PSEUDO RESPONSE REGULATOR 37, pseudo-response regulator 4, Days to heading 7, Days to heading on chromosome 7, CCT domain-containing gene 28, CCT (CO, CO-LIKE and TOC1) domain protein 28, CCT domain protein 28, \"grain number, plant height and heading date 7.1\", Grain height date 7.1, Early heading7-2, Heading date 7.2"		prr37, PRR37-2a, PRR37(H143), PRR37(M23), PRR37-1, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2, PRR37-2a, osprr37, oscct28	7	KF977867, KF977868, KF977869, KF815740. AB189039, AB189042. Q0D3B6, A2YQ93. MT500239 - MT500363. NCBI-GEO database: GSE114188. GO:0035556: intracellular signal transduction. a rice ortholog of Arabidopsis gene for circadian clock component. a true ortholog of Arabidopsis PRR7. Our data showed that HD7.2 (from Oryza rufipogon) is likely a novel OsPRR37 allele (Jing et al. 2018).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os07g0695100	LOC_Os07g49460.1, LOC_Os07g49460.4, LOC_Os07g49460.3, LOC_Os07g49460.2				GO:0045926 - negative regulation of growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0032776 - DNA methylation on cytosine, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009266 - response to temperature stimulus, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering, GO:0048511 - rhythmic process, GO:0000156 - two-component response regulator activity	TO:0000447 - filled grain number, TO:0000396 - grain yield, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000432 - temperature response trait, TO:0000696 - starch content, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000229 - photoperiod sensitivity	
2275	HD4	Hd4(t), qHD4(t), qHD4	HEADING DATE 4	Heading date (QTL)-4(t)			7	E1 might be allelic with Hd4.	 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
2278	GA3OX1	OsGA3ox1, GA3ox1, OsGA3OX1	GIBBERELLIN 3BETA-HYDROXYLASE 1	GA 3beta-hydroxylase1, GA 3beta-hydroxylase 1, Gibberellin(GA)-3 beta-hydroxylase-1	GIBBERELLIN 3BETA-HYDROXYLASE 1	osga3ox1, osga3ox1-1, osga3ox1-2, osga3ox1-3, osga3ox1-4, osga3ox1-10, osga3ox1-19	5	This gene controls some steps of gibberellin synthesis. The defect on this process causes dwarfism of rice. This gene is located on chromosome 5 at 33.6cM. AC144738. rice ortholog of Arabidopsis GA4.	 Biochemical character,  Character as QTL - Yield and productivity	Os05g0178100	LOC_Os05g08540.1	GR:0061381			GO:0017000 - antibiotic biosynthetic process, GO:0010208 - pollen wall assembly, GO:0016707 - gibberellin 3-beta-dioxygenase activity, GO:0010581 - regulation of starch biosynthetic process, GO:0009555 - pollen development, GO:0042446 - hormone biosynthetic process, GO:0005506 - iron ion binding, GO:0009536 - plastid, GO:0009685 - gibberellin metabolic process, GO:0009686 - gibberellin biosynthetic process, GO:0016216 - isopenicillin-N synthase activity	TO:0000421 - pollen fertility, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000218 - pollen abortion type, TO:0000455 - seed set percent, TO:0002658 - starch grain synthesis	PO:0001007 - pollen development stage , PO:0025313 - tapetum , PO:0009066 - anther 
2280	RA	RA(t)	ALLERGEN	Rice Allergen(t)	ALLERGEN				 Biochemical character								
2281	RPL12-1	rpl12-1	RIBOSOMAL PROTEIN L 12	ribosomal protein L12-1	RIBOSOMAL PROTEIN L 12			This gene codes the chloroplast ribosomal protein L12.	 Biochemical character						GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
2282	AL1	RPL12-2, rpl12-2, CL12, OsRPL12-2, L12/AL1, OsAL1	ALBINO LETHAL 1	"ribosomal protein L12-2, \"50S ribosomal protein L12, chloroplastic\", chloroplast ribosomal protein L12"	RIBOSOMAL PROTEIN L12-2	al1	1	This gene codes the chloroplast protein L12. RIBOSOMAL PROTEIN L 12. O22386. AB022674.	 Coloration - Chlorophyll,  Biochemical character,  Vegetative organ - Leaf	Os01g0662300	LOC_Os01g47330.1				GO:0005840 - ribosome, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0009536 - plastid, GO:0009658 - chloroplast organization, GO:0003735 - structural constituent of ribosome	TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	
2283	SEPAT	se-pat(t), sepat(t)*(se), sepat(t)*	PHOTOSENSITIVITY PAT	photosensitivity-pat(t), photoperiod-sensitivity from Patpaku			6	se-pat is loosely linked with Se-1 on chromosome 6 and the two genes act additively. However, response to short-day treatment of se-pat is age dependent, that is, the treatment started at the age of 7 weeks old is effective but that at germination stage. PO:0009049; inflorescence ; PO:0009013; meristem ; PO:0006318; floret (sensu Poaceae) ; PO:0009010; seed. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage.	 Reproductive organ - Heading date			GR:0061082			GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity	TO:0000137 - days to heading, TO:0000229 - photoperiod sensitivity, TO:0000469 - days to maturity	PO:0009049 - inflorescence , PO:0009013 - portion of meristem tissue , PO:0009010 - seed , PO:0009082 - spikelet floret 
2284	RGP1	rgp1, OsRab11E2	SMALL GTP-BINDING PROTEIN 1	ras -related GPT-binding protein1, Ras-related protein RGP1, GTP-binding regulatory protein RGP1, small GTP-binding protein OsRab11E2	SMALL GTP-BINDING PROTEIN 1		9	This gene encodes a small GTP-binding protein. Being introduced into rice, this gene causes dwarfisim, early flowering, and high grain yield. P25766. GO:0090404:pollen tube tip.	 Biochemical character	Os09g0281700	LOC_Os09g10940.1				GO:0007264 - small GTPase mediated signal transduction, GO:0070382 - exocytic vesicle, GO:0045177 - apical part of cell, GO:0080092 - regulation of pollen tube growth, GO:0009860 - pollen tube growth, GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0005525 - GTP binding		
2285	qPHO-12(t) (PHO(t))	qPHO-12(t) (PHO(t))	phosphorous deficiency tolerance (QTL)-12(t)	phosphorous deficiency tolerance (QTL)-12(t)			12	This phosphorous deficiency tolerance QTL is located between RFLP markers, RG9 and RG241 on chromosome 12.	 Tolerance and resistance - Stress tolerance								
2286	PMS3	pms3, LDMAR	PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3	photoperiod-sensitive genic male sterility3, long-day-specific male-fertility-associated RNA			12	Male sterile under long-day conditions and fertile under short-day conditions. Located between RFLP markers R2708 and C751/RZ261 on chromosome 12. JQ317784, JQ317784.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os12g0545900	LOC_Os12g36030.1, LOC_Os12g36030.2, LOC_Os12g36030.3				GO:0009648 - photoperiodism, GO:0007275 - multicellular organismal development		
2287	qAC-5-1(t) (qAC-5)	qAC-5-1(t) (qAC-5)	amylose content (QTL)-5-1(t)	amylose content (QTL)-5-1(t)			5	This QTL controls amylose content, located between RFLP markers RG573 and C624 on chromosome 5.	 Seed - Physiological traits - Storage substances								
2288	qGC-2-1(t) (qGC-2)	qGC-2-1(t) (qGC-2)	gel consistency (QTL)-2-1(t)	gel consistency (QTL)-2-1(t)			2	This QTL controls gel consistency, located between two RFLP markers, RG171 and G243A on chromosome 2.	 Seed - Physiological traits - Taste								
2289	qGC-7	qGC-7	gel consistency (QTL)-7	gel consistency (QTL)-7				This QTL controls gel consistency, located between two RFLP markers, TCT122 and RG769 on chromosome 7.	 Seed - Physiological traits - Taste								
2290	qASS-6-1(t)	qASS-6-1(t)	alkali spreading score (QTL)-6-1(t)	alkali spreading score (QTL)-6-1(t)			6	This QTL controls alkali spreading score of rice grain, located between two RFLP markers, CT201 and RZ450.	 Seed - Physiological traits - Taste								
2291	qPGWC-8	qPGWC-8	white core grain percentage (QTL)-8	white core grain percentage (QTL)-8				This QTL controls the percentage of grain with a white core, located between two RFLP markers, G187 and RZ66 on chromosome 8.	 Seed - Physiological traits - Taste								
2292	qPGWC-12	qPGWC-12	white core grain percentage (QTL)-12	white core grain percentage (QTL)-12				This QTL controls the percentage of grain with a white core, located between two RFLP markers, CT462 and RG574 on chromosome 12.	 Seed - Physiological traits - Taste								
2293	qSWC-3	qSWC-3	square of white core (QTL)-3	square of white core (QTL)-3				This QTL controls the square of the white core, the ratio of the wquare of the white core to the square of the white-core kernel. Located between two RFLP markers, CT211A and G1318 on chromosome 3.	 Seed - Physiological traits - Taste								
2294	PDC4	pdc4	PYRUVATE DECARBOXYLASE 4	pyruvate decarboxylase4	PYRUVATE DECARBOXYLASE 4			This gene is located in close proximity to pdc1.	 Biochemical character						GO:0045254 - pyruvate dehydrogenase complex, GO:0004737 - pyruvate decarboxylase activity, GO:0042867 - pyruvate catabolic process		
2295	qPKV-2	qPKV-2	peak viscosity (QTL)-2	peak viscosity (QTL)-2				This QTL controls peak viscosity of pasting curve, located between RFLP markers, GA120 and G357 on chromosome 2.	 Seed - Physiological traits - Taste								
2296	qPKV-12	qPKV-12	peak viscosity (QTL)-12	peak viscosity (QTL)-12				This QTL controls peak viscosity of paste curve measurement, located between RFLP markers, RG413 and G2140 on chromosome 12.	 Seed - Physiological traits - Taste								
2297	qHPV-6-1	qHPV-6-1	hot paste viscosity (QTL)-6-1	hot paste viscosity (QTL)-6-1				This QTL controls hot paste viscosity of paste curve measurement. It is located in the same position of wx on chromosome 6.	 Seed - Physiological traits - Taste								
2298	qHPV-6-2	qHPV-6-2	hot paste viscosity (QTL)-6-2	hot paste viscosity (QTL)-6-2				This QTL controls hot paste viscosity of paste curve measurement. It is located at the same position of alk (alkali degeneration) gene on chromosome 6.	 Seed - Physiological traits - Taste								
2299	qCPV-6-1	qCPV-6-1	cold paste viscosity (QTL)-6-1	cold paste viscosity (QTL)-6-1				This QTL controls cold paste viscosity of paste curve measurement. It is located in the same interval of wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2300	qCPV-6-2	qCPV-6-2	cold paste viscosity (QTL)-6-2	cold paste viscosity (QTL)-6-2				This QTL controls cold paste viscosity of paste curve measurement.  It is located in the same interval of alk (alkali degeneration) gene on chromosome 6.	 Seed - Physiological traits - Taste								
2301	qCPV-1	qCPV-1	cold paste viscosity (QTL)-1	cold paste viscosity (QTL)-1				This QTL controls cold paste viscosity of paste curve measurement.  Itis located between RFLP markers, C979 and C385 on chromosome 1.	 Seed - Physiological traits - Taste								
2302	qBDV-7	qBDV-7	breakdown viscosity (QTL)-7	breakdown viscosity (QTL)-7				Breakdown viscosity (BDV) is derived from [PKV](Peak viscosity)-[HPV](Hot paste viscosity). This QTL is located between RFLP markers, RG769 and RG528 on chromosome 7.	 Seed - Physiological traits - Taste								
2303	qBDV-1	qBDV-1	breakdown viscosity (QTL)-1	breakdown viscosity (QTL)-1				Breakdown viscosity (BDV) is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, RG612 and C131 on chromosome 1.	 Seed - Physiological traits - Taste								
2304	qBDV-5	qBDV-5	breakdown viscosity (QTL)-5	breakdown viscosity (QTL)-5				Breakdown viscosity is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, RG573 and C624 on chromosome 5.	 Seed - Physiological traits - Taste								
2305	qBDV-6	qBDV-6	breakdwon viscosity (QTL)-6	breakdwon viscosity (QTL)-6				Breakdown viscosity (BDV) is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located at the same position of Wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2306	qBDV-12	qBDV-12	breakdown viscosity (QTL)-12	breakdown viscosity (QTL)-12				Breakdown viscosity (BDV) is derived from [PKV](peak viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, ATT42A and G196 on chromosome 12.	 Seed - Physiological traits - Taste								
2307	qCSV-1	qCSV-1	consistency viscosity (QTL)-1	consistency viscosity (QTL)-1				Consistency viscosity (CSV) is derived from  [CPV](cold paste viscosity) - [HPV](hot paste viscosity).  This QTL is located between RFLP markers, C949 and C385 on chromosome 1.	 Seed - Physiological traits - Taste								
2308	qCSV-6-2	qCSV-6-2	consistency viscosity (QTL)-6-2	consistency viscosity (QTL)-6-2				Consistency viscosity is derived from [CPV](cold paste viscosity) - [HPV](hot paste viscosity). This QTL is located between RFLP markers, CT506 and C235 on chromosome 6.	 Seed - Physiological traits - Taste								
2309	qCSV-6-1	qCSV-6-1	consistency viscosity (QTL)-6-1	consistency viscosity (QTL)-6-1				Consistency viscosity is derived from [CPV](cold paste viscosity) - [HPV](hot paste viscosity).  This QTL is located at the same position of Wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2310	qCSV-7	qCSV-7	consistency viscosity (QTL)-7	consistency viscosity (QTL)-7				Consistency viscosity is derived from [CPV] (cold paste viscosity) - [HPV] (hot paste viscosity). This QTL is located between RFLP markers, TCT122 and RG769 on chromosome 7.	 Seed - Physiological traits - Taste								
2311	qSBV-1	qSBV-1	setback viscosity (QTL)-1	setback viscosity (QTL)-1				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity).  This QTL is located between RFLP markers, RG612 and C131 on chromosome 1.	 Seed - Physiological traits - Taste								
2312	qSBV-5-1	qSBV-5-1	setback viscosity (QTL)-5-1	setback viscosity (QTL)-5-1				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity). This QTL is located between RFLP markers, C624 and G81 on chromosome 5.	 Seed - Physiological traits - Taste								
2313	qSBV-5-2	qSBV-5-2	setback viscosity (QTL)-5-2	setback viscosity (QTL)-5-2				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity).  This QTL is located between RFLP markers, RG470 and GA41 on chromosome 5.	 Seed - Physiological traits - Taste								
2314	qSBV-6	qSBV-6	setback viscosity (QTL)-6	setback viscosity (QTL)-6				Setback viscosity is derived from [CPV] (cold paste viscosity) - [PKV] (peak viscosity).  This QTL is locate at the same position of Wx gene on chromosome 6.	 Seed - Physiological traits - Taste								
2315	TMS4	tms4(t), ms84, tms4(t)*, tgms-vn1	THERMOSENSITIVE MALE STERILITY 4	thermosensitive male sterility4(t), male sterile-84, thermosensitive male sterility-4			2	This gene is located in the vicinity of AFLP marker E5/M12-600 on chromosome 2. PO:0009066; anther ; PO:0009046; flower.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061098			GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus	TO:0000067 - genic male sterility-thermo sensitive	PO:0009066 - anther , PO:0009046 - flower 
2316	qSH-1-2(t) (qSHT-1)	qSH-1-2(t) (qSHT-1)	shattering (QTL)-1-2(t)	shattering (QTL)-1-2(t)			1	This QTL controls seed shattering, being located between markers, G393 and OP on chromosome 1.	 Seed - Physiological traits - Shattering								
2317	qSH-4-2(t) (qSHT-4)	qSH-4-2(t) (qSHT-4)	seed shattering (QTL)-4-2(t)	seed shattering (QTL)-4-2(t)			4	This QTL controls seed shattering, being located between markers, CDO244 and RG214 on chromosome 4.	 Seed - Physiological traits - Shattering								
2318	qSH-8-1(t) (qSHT-8)	qSH-8-1(t) (qSHT-8)	shattering (QTL)-8-1(t)	shattering (QTL)-8-1(t)			8	This QTL controls seed shattering, being located between markers, G187 and Amp2 on chromosome 8.	 Seed - Physiological traits - Shattering								
2319	qSH-11-1(t) (qSHT-11)	qSH-11-1(t) (qSHT-11)	shattering (QTL)-11-1(t)	shattering (QTL)-11-1(t)			11	This QTL controls seed shattering, being located between markers, G24 and APAGE2 on chromosome 11.	 Seed - Physiological traits - Shattering								
2320	qDOR-2	qDOR-2	seed dormancy (QTL)-2	seed dormancy (QTL)-2				This QTL controls seed dormancy, being located between markers, Amp1 and RZ476 on chromosome 2.	 Seed - Physiological traits - Dormancy								
2321	qDOR-3-1	qDOR-3-1	seed dormancy (QTL)-3-1	seed dormancy (QTL)-3-1				This QTL controls seed dormancy, being located between markers, G144 and BCD454 on chromosome 3.	 Seed - Physiological traits - Dormancy								
2322	qDOR-3-2	qDOR-3-2	seed dormancy (QTL)-3-2	seed dormancy (QTL)-3-2				This QTL controls seed dormancy, being located between markers, C12 and Pgi1 on chromosome 3.	 Seed - Physiological traits - Dormancy								
2323	qDOR-3-3	qDOR-3-3	seed dormancy (QTL)-3-3	seed dormancy (QTL)-3-3				This QTL controls seed dormancy, being located between markers, R1927 and CDO122 on chromosome 3.	 Seed - Physiological traits - Dormancy								
2324	qDOR-5-1	qDOR-5-1	seed dormancy (QTL)-5-1	seed dormancy (QTL)-5-1				This QTL controls seed dormancy, being located between markers, RZ296 and BCD1072 on chromosome 5.	 Seed - Physiological traits - Dormancy								
2325	qDOR-5-2	qDOR-5-2	seed dormancy (QTL)-5-2	seed dormancy (QTL)-5-2				This QTL controls seed dormancy, being located between markers, Bh2 and R521 on chromosome 5.	 Seed - Physiological traits - Dormancy								
2326	qDOR-6-1	qDOR-6-1	seed dormancy (QTL)-6-1	seed dormancy (QTL)-6-1				This QTL controls seed dormancy, being located between Pgi2 and Amp3 on chromosome 6.	 Seed - Physiological traits - Dormancy								
2327	qDOR-6-2	qDOR-6-2	seed dormancy (QTL)-6-2	seed dormancy (QTL)-6-2				This QTL controls seed dormancy, being located between markers, R2171 and RZ144 on chromosome 6.	 Seed - Physiological traits - Dormancy								
2328	qDOR-8	qDOR-8	seed dormancy (QTL)-8	seed dormancy (QTL)-8				This QTL controls seed dormancy, being located between markers, RG181 and Amp2 on chromosome 8.	 Seed - Physiological traits - Dormancy								
2329	qDOR-9-1	qDOR-9-1	seed dormancy (QTL)-9-1	seed dormancy (QTL)-9-1				This QTL controls seed dormancy, being located between markers Awn and Est12 on chromosome 9.	 Seed - Physiological traits - Dormancy								
2330	qDOR-9-2	qDOR-9-2	seed dormancy (QTL)-9-2	seed dormancy (QTL)-9-2				This QTL controls seed dormancy, being located between markers RZ972 and C506 on chromosome 9.	 Seed - Physiological traits - Dormancy								
2331	qDOR-11-1	qDOR-11-1	seed dormancy (QTL)-11-1	seed dormancy (QTL)-11-1				This QTL controls seed dormancy, being located between markers G24 and RZ141 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2333	qDOR-11-2	qDOR-11-2	seed dormancy (QTL)-11-2	seed dormancy (QTL)-11-2				This QTL controls seed dormancy, being located between markers RZ141 and APAGE2 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2334	qDOR-11-3	qDOR-11-3	seed dormancy (QTL)-11-3	seed dormancy (QTL)-11-3				This QTL controls seed dormancy, being located between markers G257 and CDO365 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2335	qDOR-11-4	qDOR-11-4	seed dormancy (QTL)-11-4	seed dormancy (QTL)-11-4				This QTL controls seed dormancy, being located between markers CDO365 and C6a on chromosome 11.	 Seed - Physiological traits - Dormancy								
2336	qDOR-11-5	qDOR-11-5	seed dormancy (QTL)-11-5	seed dormancy (QTL)-11-5				This QTL controls seed dormancy, being located between markers R1465 and RG1109 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2337	qDOR-11-6	qDOR-11-6	seed dormancy (QTL)-11-6	seed dormancy (QTL)-11-6				This QTL controls seed dormancy, being located between markers RG1109 and RZ536 on chromosome 11.	 Seed - Physiological traits - Dormancy								
2338	qCMS-1-1(t) (QCMS1.1)	qCMS-1-1(t) (QCMS1.1)	cell membrane stability (QTL)-1-1(t)	cell membrane stability (QTL)-1-1(t)			1	Cell membrane stability is one of the mojor selection indices of drought torelance in cereals. This QTL is located between markers CDO345 and ME10-14 on chromosome 1.	 Tolerance and resistance - Stress tolerance								
2339	qCMS-3-1(t) (QCMS3.1)	qCMS-3-1(t) (QCMS3.1)	cell membrane stability (QTL)-3-1(t)	cell membrane stability (QTL)-3-1(t)			3	Cell membrane stability is one of the mojor selection indices of drought tolerance in cereals. This QTL is located between markers EM11-2 and RZ403 on chromosome 3.	 Tolerance and resistance - Stress tolerance								
2340	qCMS-7-1(t) (QCMS7.1)	qCMS-7-1(t) (QCMS7.1)	cell membrane stability (QTL)-7-1(t)	cell membrane stability (QTL)-7-1(t)			7	Cell membrane stability is one of the major selection indices of drought tolerance in celeals. This QTL is located between markers EM17-3 and ME2-15 on chromosome 7.	 Tolerance and resistance - Stress tolerance								
2341	qCMS-8-1(t) (QCMS8.1)	qCMS-8-1(t) (QCMS8.1)	cell membrane stability (QTL)-8-1(t)	cell membrane stability (QTL)-8-1(t)			8	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers G2132 and R1394A on chromosome 8.	 Tolerance and resistance - Stress tolerance								
2342	qCMS-8-2(t) (QCMS8.2)	qCMS-8-2(t) (QCMS8.2)	cell membrane stability (QTL)-8-2(t)	cell membrane stability (QTL)-8-2(t)			8	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers EM18-5 and RG598 on chromosome 8.	 Tolerance and resistance - Stress tolerance								
2343	qCMS-9-1(t) (QCMS9.1)	qCMS-9-1(t) (QCMS9.1)	cell membrane stability (QTL)-9-1(t)	cell membrane stability (QTL)-9-1(t)			9	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers RZ698 and RM219.	 Tolerance and resistance - Stress tolerance								
2344	qCMS-9-2(t) (QCMS9.2)	qCMS-9-2(t) (QCMS9.2)	cell membrane stability (QTL)-9-2(t)	cell membrane stability (QTL)-9-2(t)			9	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers ME9-6 and K985 ib chromosome 9.	 Tolerance and resistance - Stress tolerance								
2345	qCMS-11-1(t) (QCMS11.1)	qCMS-11-1(t) (QCMS11.1)	cell membrane stability (QTL)-11-1(t)	cell membrane stability (QTL)-11-1(t)			11	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers CDO365 and ME6-7 on chromosome 11.	 Tolerance and resistance - Stress tolerance								
2346	qCMS-12-1(t) (QCMS12.1)	qCMS-12-1(t) (QCMS12.1)	cell membrane stability (QTL)-12-1(t)	cell membrane stability (QTL)-12-1(t)			12	Cell membrane stability is one of the major selection indices of drought tolerance in cereals. This QTL is located between markers EM19-5 and RG901 on chromosome 12.	 Tolerance and resistance - Stress tolerance								
2347	qYD-7-1 (yd7a)	qYD-7-1 (yd7a)	yield (QTL)-7-1	yield (QTL)-7-1			7	This QTL controls grain yield, being located between markers C1023 and RG128 in 1994 and R1440 and C1023 in 1995 on chromosome 7.	 Character as QTL - Yield and productivity								
2348	qYD-8 (yd8)	qYD-8 (yd8)	yield (QTL)-8	yield (QTL)-8			8	This QTL controls grain yield, being located between markers C483 and C347 on chromosome 8.	 Character as QTL - Yield and productivity								
2349	qYD-6 (yd6)	qYD-6 (yd6)	yield (QTL)-6	yield (QTL)-6			6	This QTL controls grain yield, being located between markers R2147 and RG424 on chromosome 6.	 Character as QTL - Yield and productivity								
2350	qYD-7-2 (yd7b)	qYD-7-2 (yd7b)	yield (QTL)-7-2	yield (QTL)-7-2			7	This QTL controls grain yield, being located between markers R1789 and RM18 on chromosome 7.	 Character as QTL - Yield and productivity								
2351	qTP-1 (tp1)	qTP-1 (tp1)	tillers per plant (QTL)-1	tillers per plant (QTL)-1			1	This QTL controls number of tillers per plant, being located between markers G359 and RG532 on chromosome 1.	 Character as QTL - Yield and productivity								
2352	qTP-7-1 (tp7a)	qTP-7-1 (tp7a)	tillers per plant (QTL)-7-1	tillers per plant (QTL)-7-1			7	This QTL controls number of tillers per plant, being located between R1789 and RM18 on chromosome 7.	 Character as QTL - Yield and productivity								
2353	qTP-7-2 (tp7b)	qTP-7-2 (tp7b)	tillers per plant (QTL)-7-2	tillers per plant (QTL)-7-2			7	This QTL controls number of tillers per plant, being located between markers C1023 and RG128 on chromosome 7.	 Character as QTL - Yield and productivity								
2354	qGP-3 (gp3)	qGP-3 (gp3)	grains per panicle (QTL)-3	grains per panicle (QTL)-3			3	This QTL controls grain number per panicle, being located between markers C269 and C1087 on chromosome 3.	 Character as QTL - Yield and productivity								
2355	qGP-5-1 (gp5a)	qGP-5-1 (gp5a)	grains per panicle (QTL)-5-1	grains per panicle (QTL)-5-1			5	This QTL controls grain number per panicle, being located between markers RG360 and C734 on chromosome 5.	 Character as QTL - Yield and productivity								
2356	qGP-7-1 (gp7a)	qGP-7-1 (gp7a)	grains per panicle (QTL)-7-1	grains per panicle (QTL)-7-1			7	This QTL controls grain number per panicle, being located between markers C1023 and RG128 (in 1994) and between R1440 and C1023 (in 1995) on chromosome 7.	 Character as QTL - Yield and productivity								
2357	qGP-1 (gp1)	qGP-1 (gp1)	grains per panicle (QTL)-1	grains per panicle (QTL)-1			1	This QTL controls grain number per panicle, being located between markers RG532 and RG173 on chromosome 1.	 Character as QTL - Yield and productivity								
2358	qGP-5-2 (gp5b)	qGP-5-2 (gp5b)	grains per panicle (QTL)-5-2	grains per panicle (QTL)-5-2			5	This QTL controls grain number per panicle, being located between markers C624 and C246a on chromosome 5.	 Character as QTL - Yield and productivity								
2359	qGP-6 (gp6)	qGP-6 (gp6)	grains per panicle (QTL)-6	grains per panicle (QTL)-6			6	This QTL controls grain number per panicle, being located between markers G200 and R1014 on chromosome 6.	 Character as QTL - Yield and productivity								
2360	qGP-7-2 (gp7b)	qGP-7-2 (gp7b)	grains per panicle (QTL)-7-2	grains per panicle (QTL)-7-2			7	This QTL controls grain number per panicle, being located between markers R1789 and RM18 on chromosome 7.	 Character as QTL - Yield and productivity								
2361	qGW-3-1(t) (gw3)	qGW-3-1(t) (gw3)	grain weight (QTL)-3-1(t)	grain weight (QTL)-3-1(t)			3	This QTL controls grain weight, being located between markers C1087 and R1966 on chromosome 3.	 Character as QTL - Yield and productivity								
2362	qGW-5-1(t) (gw5a)	qGW-5-1(t) (gw5a)	grain weight (QTL)-5-1(t)	grain weight (QTL)-5-1(t)			5	This QTL controls grain weight, being located between markers RG360 and R1674 on chromosome 5.	 Character as QTL - Yield and productivity								
2363	qGW-5-2(t) (gw5b)	qGW-5-2(t) (gw5b)	grain weight (QTL)-5-2(t)	grain weight (QTL)-5-2(t)			5	This QTL controls grain weight, being located between markers C246a and RG528 on chromosome 5.	 Character as QTL - Yield and productivity								
2365	qGW-7-1(t) (gw7)	qGW-7-1(t) (gw7)	grain weight (QTL)-7-1(t)	grain weight (QTL)-7-1(t)			7	This QTL controls grain weight, being located between markers C1023 and RG128 on chromosome 7.	 Character as QTL - Yield and productivity								
2366	qGW-11-1(t) (gw11)	qGW-11-1(t) (gw11)	grain weight (QTL)-11-1(t)	grain weight (QTL)-11-1(t)			11	This QTL controls grain weight, being located between markers RM4 and RG98 on chromosome 11.	 Character as QTL - Yield and productivity								
2367	qBLSR-1 (qBlsr1)	qBLSR-1 (qBlsr1)	bacterial leaf streak resistance (QTL)-1	bacterial leaf streak resistance (QTL)-1			1	This QTL controls bacterial leaf streak resistance, being located on chromosome 1.	 Tolerance and resistance - Disease resistance								
2368	qBLSR-2 (qBlsr2)	qBLSR-2 (qBlsr2)	bacterial leaf streak resistance (QTL)-2	bacterial leaf streak resistance (QTL)-2			2	This QTL controls bacterial leaf streak resistance, being located on chromosome 2.	 Tolerance and resistance - Disease resistance								
2369	qBLSR-3-1 (qBlsr3a)	qBLSR-3-1 (qBlsr3a)	bacterial leaf streak resistance (QTL)-3-1	bacterial leaf streak resistance (QTL)-3-1			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2370	qBLSR-3-2 (qBlsr3b)	qBLSR-3-2 (qBlsr3b)	bacterial leaf streak resistance (QTL)-3-2	bacterial leaf streak resistance (QTL)-3-2			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2371	qBLSR-3-3 (qBlsr3c)	qBLSR-3-3 (qBlsr3c)	bacterial leaf streak resistance (QTL)-3-3	bacterial leaf streak resistance (QTL)-3-3			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2372	qBLSR-3-4 (qBlsr3d)	qBLSR-3-4 (qBlsr3d)	bacterial leaf streak resistance (QTL)-3-4	bacterial leaf streak resistance (QTL)-3-4			3	This QTL controls bacterial leaf streak resistance, being located on chromosome 3.	 Tolerance and resistance - Disease resistance								
2373	qBLSR-4-1 (qBlsr4a)	qBLSR-4-1 (qBlsr4a)	bacterial leaf streak resistance (QTL)-4-1	bacterial leaf streak resistance (QTL)-4-1			4	This QTL controls bacterial leaf streak resistance, being located on chromosome 4.	 Tolerance and resistance - Disease resistance								
2374	qBLSR-4-2 (qBlsr4b)	qBLSR-4-2 (qBlsr4b)	bacterial leaf streak resistance (QTL)-4-2	bacterial leaf streak resistance (QTL)-4-2			4	This QTL controls bacterial leaf streak resistance, being located on chromosome 4.	 Tolerance and resistance - Disease resistance								
2375	qBLSR-5-1 (qBlsr5a)	qBLSR-5-1 (qBlsr5a)	bacterial leaf streak resistance (QTL)-5-1	bacterial leaf streak resistance (QTL)-5-1			5	This QTL controls bacterial leaf streak resistance, being located on chromosome 5.	 Tolerance and resistance - Disease resistance								
2376	qBLSR-5-2 (qBlsr5b)	qBLSR-5-2 (qBlsr5b)	bacterial leaf streak resistance (QTL)-5-2	bacterial leaf streak resistance (QTL)-5-2			5	This QTL controls bacterial leaf streak resistance, being located on chromosome 5.	 Tolerance and resistance - Disease resistance								
2377	qBLSR-11 (qBlsr11)	qBLSR-11 (qBlsr11)	bacterial leaf streak resistance (QTL)-11	bacterial leaf streak resistance (QTL)-11			11	This QTL controls bacterial leaf streak resistance, being located on chromosome 11.	 Tolerance and resistance - Disease resistance								
2378	qSB-2	qSB-2	sheath blight resistance (QTL)-2	sheath blight resistance (QTL)-2			2	This QTL controls sheath blight resistance, being located between markers G243 and RM29 (in 1997) and between RM29 and RG171 (in 1998) on chromosome 2.	 Tolerance and resistance - Disease resistance								
2379	qSB-3	qSB-3	sheath blight resistance (QTL)-3	sheath blight resistance (QTL)-3			3	This QTL controls sheath blight resistance, being located between markers R250 and C746 on chromosome 3.	 Tolerance and resistance - Disease resistance								
2380	qSB-7	qSB-7	sheath blight resistance (QTL)-7	sheath blight resistance (QTL)-7			7	This QTL controls sheath blight resistance, being located between markers RG30 and RG477 on chromosome 7.	 Tolerance and resistance - Disease resistance								
2381	qSB-11	qSB-11	sheath blight resistance (QTL)-11	sheath blight resistance (QTL)-11			11	This QTL cotrols sheath blight resistance, being located between markers G44 and RG118 on chromosome 11.	 Tolerance and resistance - Disease resistance								
2382	qSB-9-1	qSB-9-1	sheath blight resistance (QTL)-9-1	sheath blight resistance (QTL)-9-1			9	This QTL controls sheath blight resistance, being located between markers C397 and G103 on chromosome 9.	 Tolerance and resistance - Disease resistance								
2383	qSB-9-2	qSB-9-2	sheath blight resistance (QTL)-9-2	sheath blight resistance (QTL)-9-2			9	This QTL controls sheath blight resistance, being located between markers RG570 and C356 on chromosome 9.	 Tolerance and resistance - Disease resistance								
2384	qHD-2(t)(qHD-2)	qHD-2(t)(qHD-2)	heading date (QTL)-2(t)	heading date (QTL)-2(t)			2	This QTL controls heading date, being located between markers RM263 and C424 on chromosome 2.	 Reproductive organ - Heading date								
2385	qHD-3-1	qHD-3-1, qHD-3-1(t)(qHD-3)	heading date (QTL)-3-1	heading date (QTL)-3-1			3	This QTL controls heading date, being located between markers G164 and RM227 on chromosome 3.	 Reproductive organ - Heading date								
2386	qHD-5(t)(qHD-5)	qHD-5(t)(qHD-5)	heading date (QTL)-5(t)	heading date (QTL)-5(t)			5	This QTL controls heading date, being located between markers C624 and RG13 on chromosome 5.	 Reproductive organ - Heading date								
2387	qHD-7-4(t)(qHD-7)	qHD-7-4(t)(qHD-7)	heading date (QTL)-7-4(t)	heading date (QTL)-7-4(t)			7	This QTL controls heading date, being located between markers RG30 and RG477 on chromosome 7.	 Reproductive organ - Heading date								
2388	qPH-3-1(t)	qPH-3-1(t)	plant height (QTL)-3-1(t)	plant height (QTL)-3-1(t)			3	This QTL controls plant height, being located between markers G164 and RM227 on chromosome 3.	 Vegetative organ - Culm								
2389	qPH-4-1(t)	qPH-4-1(t)	plant height (QTL)-4-1(t)	plant height (QTL)-4-1(t)			4	This QTL controls plant height, being located between markers R738 and C513 on chromosome 4.	 Vegetative organ - Culm								
2390	qPH-11-1(t)	qPH-11-1(t)	plant height (QTL)-11-1(t)	plant height (QTL)-11-1(t)			11	This QTL controls plant height, being located between markers RZ628 and G1112 on chromosome 11.	 Vegetative organ - Culm								
2391	qINE-1(QIne1)	qINE-1(QIne1)	internode elongation (QTL)-1	internode elongation (QTL)-1			1	This QTL afects internode elongation under flooding conditions, being locacted near sd1 gene on chromosome 1.	 Vegetative organ - Culm								
2392	qINE-4(QIne4)	qINE-4(QIne4)	internode elongation (QTL)-4	internode elongation (QTL)-4			4	This QTL affects internode elongation under flooding conditions, being located between RFLP markers P3M1-5 and P3M5-1 on chromosome 4.	 Vegetative organ - Culm								
2395	qESA-6 (esa-1)	qESA-6 (esa-1)	embryo-sac abortion (QTL)-6	embryo-sac abortion (QTL)-6			6	This QTL causes embryo-sac abortion, being located between markers G200 and C235 on chromosome 6.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility								
2396	qESA-12-1 (esa-2)	qESA-12-1 (esa-2)	embryo-sac abortion (QTL)-12-1	embryo-sac abortion (QTL)-12-1			12	This QTL causes embryo-sac abortion, being located between markers RG181 and G1106 on chromosome 12.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility								
2397	qESA-12-2 (esa-3)	qESA-12-2 (esa-3)	embryo-sac abortion (QTL)-12-2	embryo-sac abortion (QTL)-12-2			12	This QTL causes embryo-sac abortion, being located between markers RG323 and RG463 on chromosome 12.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility								
2398	qOA-1-1 (oa1.1)	qOA-1-1 (oa1.1)	osmotic adjustment (QTL)-1-1	osmotic adjustment (QTL)-1-1			1	This QTL controls osmotic adjustment of rice as an index of drought tolerance, being located on chromosome 1 flanked by DNA markers ME2-12 and RG140.	 Tolerance and resistance - Stress tolerance								
2399	qOA-2-1 (oa2.1)	qOA-2-1 (oa2.1)	osmotic adjustment (QTL)-2-1	osmotic adjustment (QTL)-2-1			2	This QTL controls osmotic adjustment as an index of drought tolerance, located on chromosome 2 flanked by DNA markers RM263 and R3393.	 Tolerance and resistance - Stress tolerance								
2400	qOA-3-1 (oa3.1)	qOA-3-1 (oa3.1)	osmotic adjustment (QTL)-3-1	osmotic adjustment (QTL)-3-1			3	This QTL controls osmotic adjustment as an index of drought tolerance, being located on chromosome 3 flanked by DNA markers EM17-1 and C63.	 Tolerance and resistance - Stress tolerance								
2401	qOA-8-1 (oa8.1)	qOA-8-1 (oa8.1)	osmotic adjustment (QTL)-8-1	osmotic adjustment (QTL)-8-1			8	This QTL controls osmotic adjustment as an index of drought tolerance, being located on chromosome 8 flanked by DNA markers G2132 and R1394A.	 Tolerance and resistance - Stress tolerance								
2402	qOA-9-1 (oa9.1)	qOA-9-1 (oa9.1)	osmotic adjustment (QTL)-9-1	osmotic adjustment (QTL)-9-1			9	This QTL controls osmotic adjustment as an index of drought tolerance, being located on chromosome 9 flanked by DNA markers EM14-6 and ME4-13.	 Tolerance and resistance - Stress tolerance								
2403	qRPI-3-1(rpi3.1)	qRPI-3-1(rpi3.1)	root penetration index (QTL)-3-1	root penetration index (QTL)-3-1			3	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM19-4 and EM13-1.	 Vegetative organ - Root								
2404	qRPI-4-1(rpi4.1)	qRPI-4-1(rpi4.1)	root penetration index (QTL)-4-1	root penetration index (QTL)-4-1			4	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers EM14-5 and ME2-13.	 Vegetative organ - Root								
2405	qRPI-4-2(rpi4.2)	qRPI-4-2(rpi4.2)	root penetration index (QTL)-4-2	root penetration index (QTL)-4-2			4	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 4, flanked by DNA markers RG939 and RG476.	 Vegetative organ - Root								
2406	qRPI-12-1(rpi12.1)	qRPI-12-1(rpi12.1)	root penetration index (QTL)-12-1	root penetration index (QTL)-12-1			12	This QTL controls root penetration index in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers ME6-12 and RG9.	 Vegetative organ - Root								
2407	qBRT-2-1(brt2.1)	qBRT-2-1(brt2.1)	basal root thickness (QTL)-2-1	basal root thickness (QTL)-2-1			2	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers TGMSP2 and ME9-7.	 Vegetative organ - Root								
2408	qBRT-3-1(brt3.1)	qBRT-3-1(brt3.1)	basal root thickness (QTL)-3-1	basal root thickness (QTL)-3-1			3	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM19-11 and RZ474.	 Vegetative organ - Root								
2409	qBRT-4-1(brt4.1)	qBRT-4-1(brt4.1)	basal root thickness (QTL)-4-1	basal root thickness (QTL)-4-1			4	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 4 flanked DNA markers RG939 and RG476.	 Vegetative organ - Root								
2410	qBRT-8-1(brt8.1)	qBRT-8-1(brt8.1)	basal root thickness (QTL)-8-1	basal root thickness (QTL)-8-1			8	This QTL controls basal root thickness in relation to dought tolerance, being located on chromosome 8 flanked by DNA markers RZ997 and EM14-1.	 Vegetative organ - Root								
2411	qBRT-9-1(brt9.1)	qBRT-9-1(brt9.1)	basal root thickness (QTL)-9-1	basal root thickness (QTL)-9-1			9	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers ME2-17 and C711.	 Vegetative organ - Root								
2412	qBRT-12-1(brt12.1)	qBRT-12-1(brt12.1)	basal root thickness (QTL)-12-1	basal root thickness (QTL)-12-1			12	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers ME10-3 and ME6-6.	 Vegetative organ - Root								
2413	qPRT-1-1(prt1.1)	qPRT-1-1(prt1.1)	penetrated root thickness (QTL)-1-1	penetrated root thickness (QTL)-1-1			1	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 1 flanked by DNA markers ME6-4 and EM18-10.	 Vegetative organ - Root								
2414	qPRT-1-2(prt1.2)	qPRT-1-2(prt1.2)	penetrated root thickness (QTL)-1-2	penetrated root thickness (QTL)-1-2			1	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 1 flanked by DNA markers RG957 and RG345.	 Vegetative organ - Root								
2415	qPRT-2-1(prt2.1)	qPRT-2-1(prt2.1)	penetrated root thickness (QTL)-2-1	penetrated root thickness (QTL)-2-1			2	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers ME2-7 and EMP2-7.	 Vegetative organ - Root								
2416	qPRT-2-2(prt2.2)	qPRT-2-2(prt2.2)	penetrated root thickness (QTL)-2-2	penetrated root thickness (QTL)-2-2			2	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers ME9-7 and K706.	 Vegetative organ - Root								
2417	qPRT-4-1(prt4.1)	qPRT-4-1(prt4.1)	penetrated root thickness (QTL)-4-1	penetrated root thickness (QTL)-4-1			4	This QTL controls penetrated root thichness in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG939 and RG476.	 Vegetative organ - Root								
2418	qPRT-6-1(prt6.1)	qPRT-6-1(prt6.1)	penetrated root thickness (QTL)-6-1	penetrated root thickness (QTL)-6-1			6	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers R2549 and RG716.	 Vegetative organ - Root								
2419	qPRT-7-1(prt7.1)	qPRT-7-1(prt7.1)	penetrated root thickness (QTL)-7-1	penetrated root thickness (QTL)-7-1			7	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 7 flanked by DNA markers RG417 and EM17-3.	 Vegetative organ - Root								
2420	qPRT-9-1(prt9.1)	qPRT-9-1(prt9.1)	penetrated root thickness (QTL)-9-1	penetrated root thickness (QTL)-9-1			9	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers RG553 and EM14-6.	 Vegetative organ - Root								
2421	qPRT-9-2(prt9.2)	qPRT-9-2(prt9.2)	penetrated root thickness (QTL)-9-2	penetrated root thickness (QTL)-9-2			9	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers ME9-6 and K985.	 Vegetative organ - Root								
2422	qPRT-12-1(prt12.1)	qPRT-12-1(prt12.1)	penetrated root thickness (QTL)-12-1	penetrated root thickness (QTL)-12-1			12	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers RG9 and ME10-1.	 Vegetative organ - Root								
2423	qPRT-12-2(prt12.2)	qPRT-12-2(prt12.2)	penetrated root thickness (QTL)-12-2	penetrated root thickness (QTL)-12-2			12	This QTL controls penetrated root thickness in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers ME4-5 and ME10-8.	 Vegetative organ - Root								
2424	qRPF-2-1(rpf2.1)	qRPF-2-1(rpf2.1)	root pulling force (QTL)-2-1	root pulling force (QTL)-2-1			2	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 2 flanked DNA markers ME13-3 and RG158.	 Vegetative organ - Root								
2425	qRPF-3-1(rpf3.1)	qRPF-3-1(rpf3.1)	root pulling force (QTL)-3-1	root pulling force (QTL)-3-1			3	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM11-9 and CDO20.	 Vegetative organ - Root								
2426	qRPF-3-2(rpf3.2)	qRPF-3-2(rpf3.2)	root pulling force (QTL)-3-2	root pulling force (QTL)-3-2			3	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 3 flanked by DNA markers EM13-1 and R2170.	 Vegetative organ - Root								
2427	qRPF-4-1(rpf4.1)	qRPF-4-1(rpf4.1)	root pulling force (QTL)-4-1	root pulling force (QTL)-4-1			4	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG214 and RG620.	 Vegetative organ - Root								
2428	qRPF-5-1(rpf5.1)	qRPF-5-1(rpf5.1)	root pulling force (QTL)-5-1	root pulling force (QTL)-5-1			5	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 5 flanked by RM164 and EM15-5.	 Vegetative organ - Root								
2429	qRPF-11-1(rpf11.1)	qRPF-11-1(rpf11.1)	root pulling force (QTL) -11-1	root pulling force (QTL) -11-1			11	This QTL controls root pulling force in relation to drought tolerance, being located on chromosome 11 flanked by DNA markers ME2-6 and RM21.	 Vegetative organ - Root								
2430	qTRDW-1-1(trdw1.1)	qTRDW-1-1(trdw1.1)	total root dry weight (QTL)-1-1	total root dry weight (QTL)-1-1			1	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 1 flanked by DNA markers RG109 and EM11-11.	 Vegetative organ - Root								
2431	qTRDW-2-1(trdw2.1)	qTRDW-2-1(trdw2.1)	total root dry weight (QTL)-2-1	total root dry weight (QTL)-2-1			2	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 2 flanked by DNA markers ME2-7 and EMP2-7.	 Vegetative organ - Root								
2432	qTRDW-4-1(trdw4.1)	qTRDW-4-1(trdw4.1)	total root dry weight (QTL)-4-1	total root dry weight (QTL)-4-1			4	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG190 and EM15-3.	 Vegetative organ - Root								
2433	qTRDW-6-1(trdw6.1)	qTRDW-6-1(trdw6.1)	total root dry weight (QTL)-6-1	total root dry weight (QTL)-6-1			6	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 6 flanked by DNA markers ME4-11 and ME7-5.	 Vegetative organ - Root								
2434	qTRDW-10-1(trdw10.1)	qTRDW-10-1(trdw10.1)	total root dry weight (QTL)-10-1	total root dry weight (QTL)-10-1			10	This QTL controls total root dry weight in relation to drought tolerance, being located on chromosome 10 flanked by DNA markers RG257 and ME5-16.	 Vegetative organ - Root								
2435	qPRDW-4-1(prdw4.1)	qPRDW-4-1(prdw4.1)	penetrated root dry weight (QTL)-4-1	penetrated root dry weight (QTL)-4-1			4	This QTL controls penetrated root dry weight in relation to drought tolerance, being located on chromosome 4 flanked by DNA markers RG939 and RG476.	 Vegetative organ - Root								
2436	qPRDW-9-1(prdw9.1)	qPRDW-9-1(prdw9.1)	penetrated root dry weight (QTL)-9-1	penetrated root dry weight (QTL)-9-1			9	This QTL controls penetrated root dry weight in relation to drought tolerance, being located on chromosome 9 flanked by DNA markers R41 and ME2-10.	 Vegetative organ - Root								
2438	qPRDW-12-1(prdw12.1)	qPRDW-12-1(prdw12.1)	penetrated root dry weight (QTL)-12-1	penetrated root dry weight (QTL)-12-1			12	This QTL controls penetrated root dry weight in relation to drought tolerance, being located on chromosome 12 flanked by DNA markers RG9 and ME10-1.	 Vegetative organ - Root								
2439	qPRL-11-1(prl11.1)	qPRL-11-1(prl11.1)	penetrated root length (QTL)-11-1	penetrated root length (QTL)-11-1			11	This QTL controls penetrated root length in relation to drought tolerance, being located on chromosome 11 flanke by DNA markers G1465 and C950.	 Vegetative organ - Root								
2440	qPH-1-1(t) (ph1)	qPH-1-1(t) (ph1)	plant height (QTL)-1-1(t)	plant height (QTL)-1-1(t)			1	This QTL controls plant height, being located on chromosome 1 flanked by DNA markers RG236 and C547.	 Vegetative organ - Culm								
2441	qPH-3-2(t) (ph3)	qPH-3-2(t) (ph3)	plant height (QTL)-3-2(t)	plant height (QTL)-3-2(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by DNA markers R1966 and G144.	 Vegetative organ - Culm								
2442	qPH-5-1(t) (ph5a)	qPH-5-1(t) (ph5a)	plant height (QTL)-5-1(t)	plant height (QTL)-5-1(t)			5	This QTL controls plant height, being located on chromosome 5 flanked by DNA markers RM163 and C624.	 Vegetative organ - Culm								
2443	qPH-5-2(t) (ph5b)	qPH-5-2(t) (ph5b)	plant height (QTL)-5-2(t)	plant height (QTL)-5-2(t)			5	This QTL controls plant height, being located on chromosome 5 flanked by DNA markers RZ649 and RM163.	 Vegetative organ - Culm								
2444	qPH-7-1(t) (ph7)	qPH-7-1(t) (ph7)	plant height (QTL)-7-1(t)	plant height (QTL)-7-1(t)			7	This QTL controls plant height, being located on chromosome 7 flanked by DNA markers RG128 and C1023 or C1023 and R1440.	 Vegetative organ - Culm								
2445	qHD-3-2	qHD-3-2, qHD-3-2(t)(hd3)	heading date (QTL)-3-2	heading date (QTL)-3-2			3	This QTL controls heading date, being located on chromosome 3 flanked by DNA markers G144 and RG393.	 Reproductive organ - Heading date								
2446	qHD-6	qHD-6, qHD-6(t)(hd6)	heading date (QTL)-6	heading date (QTL)-6			6	This QTL controls heading date, being located on chromosome 6 flanked by DNA markers R1952 and C226.	 Reproductive organ - Heading date								
2447	qHD-7-1(t)(hd7a)	qHD-7-1(t)(hd7a)	heading date (QTL)-7-1(t)	heading date (QTL)-7-1(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by DNA markers RM18 and R1789.	 Reproductive organ - Heading date								
2448	qHD-7-2(t)(hd7b)	qHD-7-2(t)(hd7b)	heading date (QTL)-7-2(t)	heading date (QTL)-7-2(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by DNA markers MX2 and RM18.	 Reproductive organ - Heading date								
2449	qHD-7-3(t)(hd7c)	qHD-7-3(t)(hd7c)	heading date (QTL)-7-3(t)	heading date (QTL)-7-3(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by DNA markers C1023 and R1440.	 Reproductive organ - Heading date								
2450	qHD-11-1(t)(hd11)	qHD-11-1(t)(hd11)	heading date (QTL)-11-1(t)	heading date (QTL)-11-1(t)			11	This QTL controls heading date, being located on chromosome 11 flanked by DNA markers C950 and G389b.	 Reproductive organ - Heading date								
2451	RTMS1	rtms1, rtms1*	REVERSE THERMO-SENSITIVE GENIC MALE-STERILE 1	reverse thermo-sensitive genic male-sterile1, reverse thermosensitive male sterility 1			10	Completely sterile when the temperature is lower than 31C. This gene is located on chromosome 10 closely linked with marker Rev1 and flanked by RM239 and RG257. PO:0009066; anther ; PO:0009046; flower. AF255611 (Rev1).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061102			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000067 - genic male sterility-thermo sensitive	PO:0009066 - anther , PO:0009046 - flower 
2452	qCTB-4-1(t) (Ctb-1, Ctb1)	qCTB-4-1(t) (Ctb-1, Ctb1)	cold tolerance (QTL)-4-1	cold tolerance (QTL)-4-1			4	This QTL controls cold tolerance and affects anther length (large anther), being located on the long arm of chromosome 4 flanked by R2737 and XNpb102.	 Tolerance and resistance - Stress tolerance								
2453	qCTB-4-2(t) (Ctb-2)	qCTB-4-2(t) (Ctb-2)	cold tolerance (QTL)-4-2	cold tolerance (QTL)-4-2			4	This QTL controls cold tolerance and affects anthr length (large anther), being located on the long arm of chromosome 4 flanked by SCAB11 and R740.	 Tolerance and resistance - Stress tolerance								
2454	GEL	gel(t), gel	GELATINISATION	gelatinisation (t), gelatinisation, gelatinization-behavior			6	This gene causes gelatinisation of endosperm starch granules in a 4 M urea solution. This gene is located on chromosome 6 flanked by RFLP markers R2147 and C1478 and to the same location with alk, acl(t), and SSIIa. This trait is used for identification. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0061086			GO:0016051 - carbohydrate biosynthetic process	TO:0000462 - gelatinization temperature	PO:0009010 - seed 
2455	ACL	acl (t), acl(t), acl	AMYLOPECTIN CHAIN-LENGTH	amylopectin chain-length (t), amylopectin chain-length, amylopectin chain length			6	This gene controls amylopectin chain-length distribution in endosperm starch-grains. This trait is used for identification of japonica-type and indica-type starch grains of their endosperm. Most probably acl(t), alk, gel(t) and SSIIa are the same gene as ... PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0061070			GO:0019252 - starch biosynthetic process	TO:0000488 - seed composition based quality trait	PO:0009010 - seed 
2457	qBPHR-1 (QBphr1)	qBPHR-1 (QBphr1)	brown planthopper resistance (QTL)-1	brown planthopper resistance (QTL)-1			1	This QTL controls brown planthopper resistance, being located on chromosome 1 flanked by RFLP markers R210 and RZ382.	 Tolerance and resistance - Insect resistance								
2458	qBPHR-3 (QBphr3)	qBPHR-3 (QBphr3)	brown planthopper resistance (QTL)-3	brown planthopper resistance (QTL)-3			3	This QTL controls brown planthopper resistance, being located on chromosome 3 flanked by RFLP markers G249 and RG418b.	 Tolerance and resistance - Insect resistance								
2459	qBPHR-5-1 (QBphr5a)	qBPHR-5-1 (QBphr5a)	brown planthopper resistance (QTL)-5-1	brown planthopper resistance (QTL)-5-1			5	This QTL controls brown planthopper resistance, being located on chromosome 5 flanked by major gene gl1 (leaf and stem pubescence) and RFLP marker Y1049.	 Tolerance and resistance - Insect resistance								
2460	qBPHR-5-2 (QBphr5b)	qBPHR-5-2 (QBphr5b)	brown planthopper resistance (QTL)-5-2	brown planthopper resistance (QTL)-5-2			5	This QTL controls brown planthopper resistance, being located on chromosome 5 flanked by RFLP markers Y1049 and R569a.	 Tolerance and resistance - Insect resistance								
2461	qBPHR-8 (QBphr8)	qBPHR-8 (QBphr8)	brown planthopper resistance (QTL)-8	brown planthopper resistance (QTL)-8			8	This QTL controls brown planthopper resistance, being located on chromosome 8 flanked by RFLP markers C1073a and G187.	 Tolerance and resistance - Insect resistance								
2462	qBPHR-11-1 (QBphr11a)	qBPHR-11-1 (QBphr11a)	brown planthopper resistance (QTL)-11-1	brown planthopper resistance (QTL)-11-1			11	This QTL controls brown planthopper resistance, being located on chromosome 11 flanked by RFLP markers RZ53 and RZ781.	 Tolerance and resistance - Insect resistance								
2463	qBPHR-11-2 (QBphr11b)	qBPHR-11-2 (QBphr11b)	brown planthopper resistance (QTL)-11-2	brown planthopper resistance (QTL)-11-2			11	This QTL controls brown planthopper resistance, being located on chromosome 11 flanked by RFLP markers RG1022 and RZ525a.	 Tolerance and resistance - Insect resistance								
2464	SGR	sgr(t), sgr, OsSGR, OsSgr, SGR1, OsSGR1	STAY GREEN LEAF	stay green leaf (t), stay green, staying green during senescence, Stay-Green	CHL-DEGRADING PATHWAY REGULATOR	ossgr-1, ossgr-2, ossgr, OsSGR-D1, OsSGR-D2	9	Leaves of the mutant remain green while senescence. The gene is located on the long arm of chromosome 9 flanked by RFLP markers RG662 and C985. AAW82954. BGIOSGA029383. PO:0009025; leaf. GRO:0007140; B-reproductive stage.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os09g0532000	LOC_Os09g36200.1	GR:0061191			GO:0042594 - response to starvation, GO:0042542 - response to hydrogen peroxide, GO:0009645 - response to low light intensity stimulus, GO:0050832 - defense response to fungus, GO:0009413 - response to flooding, GO:0009536 - plastid, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0032026 - response to magnesium ion, GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence, GO:0009749 - response to glucose stimulus, GO:0009646 - response to absence of light, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast	TO:0000524 - submergence tolerance, TO:0000249 - leaf senescence, TO:0000075 - light sensitivity, TO:0000298 - chlorophyll ratio, TO:0000615 - abscisic acid sensitivity, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000396 - grain yield, TO:0000010 - magnesium sensitivity, TO:0002712 - stay green trait, TO:0000460 - light intensity sensitivity, TO:0000255 - sheath blight disease resistance	PO:0001054 - 4 leaf senescence stage , PO:0009025 - vascular leaf 
2465	qSD-1	qSD-1	seed dormancy (QTL)-1	seed dormancy (QTL)-1			1	This QTL controls seed dormancy, being located on chromosome 1 in the vicinity of RFLP marker R1613.	 Seed - Physiological traits - Dormancy								
2466	qSD-3	qSD-3	seed dormancy (QTL)-3	seed dormancy (QTL)-3			3	This QTL controls seed dormancy, being located on chromosome 3 in the vicinity of RFLP marker C25.	 Seed - Physiological traits - Dormancy								
2467	qSD-5	qSD-5	seed dormancy (QTL)-5	seed dormancy (QTL)-5			5	This QTL controls seed dormancy, being located on chromosome 5 in the vicinity of RFLP marker R1838.	 Seed - Physiological traits - Dormancy								
2468	qSD-7-1	qSD-7-1	seed dormancy (QTL)-7-1	seed dormancy (QTL)-7-1			7	This QTL controls seed dormancy, being located on chromosome 7 in the vicinity of RFLP marker R1357.	 Seed - Physiological traits - Dormancy								
2469	qSD-11	qSD-11	seed dormancy (QTL)-11	seed dormancy (QTL)-11			11	This QTL controls seed dormancy, being located on chromosome 11 in the vicinity of RFLP marker C189.	 Seed - Physiological traits - Dormancy								
2470	qLG-2	qLG-2	seed longevity (QTL)-2	seed longevity (QTL)-2			2	This QTL controls seed longevity, being located on chromosome 2 in the vicinity of RFLP marker C1470.	 Seed - Physiological traits - Longevity								
2471	qLG-4	qLG-4	seed longevity (QTL)-4	seed longevity (QTL)-4			4	This QTL controls seed longevity, being located on chromosome 4 in the vicinity of RFLP marker R514.	 Seed - Physiological traits - Longevity								
2472	qLG-9	qLG-9	seed longevity (QTL)-9	seed longevity (QTL)-9			9	This QTL controls seed longevity, being located on chromosome 9 in the vicinity of RFLP marker R79.	 Seed - Physiological traits - Longevity								
2473	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6, OsCYP81A6, OsCYP81Q32, CYP81Q32, OsCYP71U8, CYP71U8	BENTAZON LETHAL	bentazon sensitive, BENTAZON SENSITIVITY, bentazon susceptible lethality, BENTAZON AND SULFONYLUREA RESISTANT PROTEIN, cytochrome P450 81A6	CYTOCHROME P450 81A6	cyp81a6	3	Hervicide bentazon and sulfonylurea kill this mutant. This recessive gene is located on chromosome 3 in the vicinity of marker RM168. DQ341412. AU070733. BGIOSGA013604. down-regulated after fertilization (Abiko et al. 2013). OsCYP81Q32 in Wang et al. 2023. OsCYP71U8 in Sahoo et al. 2023. GO:0098542: defense response to other organism. GO:0044550: secondary metabolite biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility,  Biochemical character	Os03g0760200	LOC_Os03g55240.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0009635 - response to herbicide, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0009566 - fertilization	TO:0000432 - temperature response trait, TO:0000058 - herbicide sensitivity	
2474	GAPDH(T)	OsGAPDH(t)	SUBMERGENCE TOLERANCE	submergence tolerance			8	This mutant is tolerant to submergence. It is located on chromosome 8.	 Tolerance and resistance - Stress tolerance						GO:0009413 - response to flooding		
2475	qGR-3-1 (qGR3-1)	qGR-3-1 (qGR3-1)	Germination rate (QTL)-3-1	Germination rate (QTL)-3-1			3	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C944 and R321.	 Character as QTL - Germination								
2476	qGR-3-2 (qGR3-2)	qGR-3-2 (qGR3-2)	germination rate (QTL)-3-2	germination rate (QTL)-3-2			3	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Germination								
2477	qGR-3-3 (qGR3-3)	qGR-3-3 (qGR3-3)	germination rate (QTL)-3-3	germination rate (QTL)-3-3			3	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C63 and RM232.	 Character as QTL - Germination								
2478	qGR-5-1 (qGR5-1)	qGR-5-1 (qGR5-1)	germination rate (QTL)-5-1	germination rate (QTL)-5-1			5	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers C246 and RM26.	 Character as QTL - Germination								
2479	qGR-5-2 (qGR5-2)	qGR-5-2 (qGR5-2)	germination rate (QTL)-5-2	germination rate (QTL)-5-2			5	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RG360 and C734b.	 Character as QTL - Germination								
2480	qGR-6-1 (qGR6-1)	qGR-6-1 (qGR6-1)	germination rate (QTL)-6-1	germination rate (QTL)-6-1			6	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers RZ667 and RG424.	 Character as QTL - Germination								
2481	qGR-6-2 (qGR6-2)	qGR-6-2 (qGR6-2)	germination rate (QTL)-6-2	germination rate (QTL)-6-2			6	This QTL controls germination rate in relation to seedling vogor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Germination								
2482	qGR-7-1 (qGR7-1)	qGR-7-1 (qGR7-1)	germination rate (QTL)-7-1	germination rate (QTL)-7-1			7	This QTL controls germination rate in relation to seedling vigor, being located on chromosome 7 flanked by molecular markers RG128 and C1023.	 Character as QTL - Germination								
2483	qTDW-1-1 (qTDW1-1)	qTDW-1-1 (qTDW1-1)	total seedling dry weight (QTL)-1-1	total seedling dry weight (QTL)-1-1			1	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers RG236 and C112.	 Character as QTL - Plant growth activity								
2484	qTDW-1-2 (qTDW1-2)	qTDW-1-2 (qTDW1-2)	total seedling dry weight (QTL)-1-2	total seedling dry weight (QTL)-1-2			1	This QTL controls total seedling dry weight in relaton to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Plant growth activity								
2485	qTDW-3-1 (qTDW3-1)	qTDW-3-1 (qTDW3-1)	total seedling dry weight (QTL)-3-1	total seedling dry weight (QTL)-3-1			3	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Plant growth activity								
2486	qTDW-5-1 (qTDW5-1)	qTDW-5-1 (qTDW5-1)	total seedling dry weight (QTL)-5-1	total seedling dry weight (QTL)-5-1			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RM26 and C1447.	 Character as QTL - Plant growth activity								
2487	qTDW-5-2 (qTDW5-2)	qTDW-5-2 (qTDW5-2)	total seedling dry weight (QTL)-5-2	total seedling dry weight (QTL)-5-2			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Plant growth activity								
2488	qTDW-6-1 (qTDW6-1)	qTDW-6-1 (qTDW6-1)	total seedling dry weight (QTL)-6-1	total seedling dry weight (QTL)-6-1			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers R2549 and C962.	 Character as QTL - Plant growth activity								
2489	qTDW-6-2 (qTDW6-2)	qTDW-6-2 (qTDW6-2)	total seedling dry weight (QTL)-6-2	total seedling dry weight (QTL)-6-2			5	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Plant growth activity								
2490	qTDW-9-1 (qTDW9-1)	qTDW-9-1 (qTDW9-1)	total seedling dry weight (QTL)-9-1	total seedling dry weight (QTL)-9-1			9	This QTL controls total seedling dry weight in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers C734 and R1164.	 Character as QTL - Plant growth activity								
2491	qSDW-1-1 (qSDW1-1)	qSDW-1-1 (qSDW1-1)	shoot dry weight (QTL)-1-1	shoot dry weight (QTL)-1-1			1	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers RG236 and C112.	 Character as QTL - Plant growth activity								
2492	qSDW-3-1 (qSDW3-1)	qSDW-3-1 (qSDW3-1)	shoot dry weight (QTL)-3-1	shoot dry weight (QTL)-3-1			3	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Plant growth activity								
2493	qSDW-5-1 (qSDW5-1)	qSDW-5-1 (qSDW5-1)	shoot dry weight (QTL)-5-1	shoot dry weight (QTL)-5-1			5	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RM26 and C1447.	 Character as QTL - Plant growth activity								
2494	qSDW-5-2 (qSDW5-2)	qSDW-5-2 (qSDW5-2)	shoot dry weight (QTL)-5-2	shoot dry weight (QTL)-5-2			5	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R360 and C734b.	 Character as QTL - Plant growth activity								
2495	qSDW-6-1 (qSDW6-1)	qSDW-6-1 (qSDW6-1)	shoot dry weight (QTL)-6-1	shoot dry weight (QTL)-6-1			6	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers R2549 and C962.	 Character as QTL - Plant growth activity								
2496	qSDW-6-2(qSDW6-2)	qSDW-6-2(qSDW6-2)	shoot dry weight (QTL)-6-2	shoot dry weight (QTL)-6-2			6	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Plant growth activity								
2497	qSDW-9-1 (qSDW9-1)	qSDW-9-1 (qSDW9-1)	shoot dry weight (QTL)-9-1	shoot dry weight (QTL)-9-1			9	This QTL controls shoot dry weight of seedling in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers C734 and R1164.	 Character as QTL - Plant growth activity								
2498	qRDW-1-1 (qRDW1-1)	qRDW-1-1 (qRDW1-1)	root dry weight (QTL)-1-1	root dry weight (QTL)-1-1			1	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Root activity								
2499	qRDW-5-1 (qRDW5-1)	qRDW-5-1 (qRDW5-1)	root dry weight (QTL)-5-1	root dry weight (QTL)-5-1			5	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers C246 and RM26.	 Character as QTL - Root activity								
2500	qRDW-5-2 (qRDW5-2)	qRDW-5-2 (qRDW5-2)	root dry weight (QTL)-5-2	root dry weight (QTL)-5-2			5	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Root activity								
2501	qRDW-10-1 (qRDW10-1)	qRDW-10-1 (qRDW10-1)	root dry weight (QTL)-10-1	root dry weight (QTL)-10-1			10	This QTL controls root dry weight of seedling in relation to seedling vigor, being located on chromosome 10 flanked by molecular markers C677 and RM258.	 Character as QTL - Root activity								
2502	qMRL-1-1 (qMRL1-1)	qMRL-1-1 (qMRL1-1)	maximum root length (QTL)-1-1	maximum root length (QTL)-1-1			1	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers C2340 and C86.	 Character as QTL - Root activity								
2503	qMRL-1-2 (qMRL1-2)	qMRL-1-2 (qMRL1-2)	maximum root length (QTL)-1-2	maximum root length (QTL)-1-2			1	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Root activity								
2504	qMRL-5-1 (qMRL5-1)	qMRL-5-1 (qMRL5-1)	maximum root length (QTL)-5-1	maximum root length (QTL)-5-1			5	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers RM26 and C1447.	 Character as QTL - Root activity								
2505	qMRL-6-1 (qMRL6-1)	qMRL-6-1 (qMRL6-1)	maximum root length (QTL)-6-1	maximum root length (QTL)-6-1			6	This QTL controls maximum root length of seedling in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers C952 and Waxy.	 Character as QTL - Root activity								
2506	qTAA-3-1 (qTAA3-1)	qTAA-3-1 (qTAA3-1)	total amylase activity (QTL)-3-1	total amylase activity (QTL)-3-1			3	This QTL controls total amylase activity in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C316 and C63.	 Character as QTL - Grain quality								
2507	qTAA-5-1 (qTAA5-1)	qTAA-5-1 (qTAA5-1)	total amylase activity (QTL)-5-1	total amylase activity (QTL)-5-1			5	This QTL controls total amylase activity in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R830 and R3166.	 Character as QTL - Grain quality								
2508	qTAA-6-1 (qTAA6-1)	qTAA-6-1 (qTAA6-1)	total amylase activity (QTL)-6-1	total amylase activity (QTL)-6-1			6	This QTL controls total amylase activity in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Grain quality								
2509	qAAA-6-1(qAAA6-1)	qAAA-6-1 (qAAA6-1)	alpha-amylase activity (QTL)-6-1	alpha-amylase activity (QTL)-6-1			6	This QTL controls alpha-amylase activity in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers RG653 and G342.	 Character as QTL - Grain quality								
2510	qAAA-6-2 (qAAA6-2)	qAAA-6-2 (qAAA6-2)	alpha-amylase activity (QTL)-6-2	alpha-amylase activity (QTL)-6-2			6	This QTL controls alpha-amylase activity in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Grain quality								
2511	qRS-3-1 (qRS3-1)	qRS-3-1 (qRS3-1)	reducing sugar content (QTL)-3-1	reducing sugar content (QTL)-3-1			3	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers RG393 and C1087.	 Character as QTL - Plant growth activity								
2512	qRS-5-1 (qRS5-1)	qRS-5-1 (qRS5-1)	reducing sugar content (QTL)-5-1	reducing sugar content (QTL)-5-1			5	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Plant growth activity								
2513	qRS-6-1 (qRS6-1)	qRS-6-1 (qRS6-1)	reducing sugar content (QTL)-6-1	reducing sugar content (QTL)-6-1			6	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers RZ667 and RG424.	 Character as QTL - Plant growth activity								
2514	qRS-6-2 (qRS6-2)	qRS-6-2 (qRS6-2)	reducing sugar content (QTL)-6-2	reducing sugar content (QTL)-6-2			6	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 6 flanked by molecular markers Waxy and C1496.	 Character as QTL - Plant growth activity								
2515	qRS-10-1 (qRS10-1)	qRS-10-1 (qRS10-1)	reducing sugar content (QTL)-10-1	reducing sugar content (QTL)-10-1			10	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 10 flanked by molecular markers C1633 and C667.	 Character as QTL - Plant growth activity								
2516	qRS-11-1 (qRS11-1)	qRS-11-1 (qRS11-1)	reducing sugar content (QTL)-11-1	reducing sugar content (QTL)-11-1			11	This QTL controls reducing sugar content in relation to seedling vigor, being located on chromosome 11 flanked by molecular markers RM254 and Clone4.	 Character as QTL - Plant growth activity								
2517	qRA-5-1 (qRA5-1)	qRA-5-1 (qRA5-1)	root activity (QTL)-5-1	root activity (QTL)-5-1			5	This QTL controls root activity in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers C246 and RM26.	 Character as QTL - Root activity								
2518	qRA-5-2 (qRA5-2)	qRA-5-2 (qRA5-2)	root activity (QTL)-5-2	root activity (QTL)-5-2			5	This QTL controls root activity in relaton to seedling vigor, being located on chromosome 5 flanked by molecular markers R830 and R3166.	 Character as QTL - Root activity								
2519	qRA-9-1 (qRA9-1)	qRA-9-1 (qRA9-1)	root activity (QTL)-9-1	root activity (QTL)-9-1			9	This QTL controls root activity in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers RM257 and RM242.	 Character as QTL - Root activity								
2520	qSW-1-1 (qSW1-1)	qSW-1-1 (qSW1-1)	seed weight (QTL)-1-1	seed weight (QTL)-1-1			1	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers RG236 and C112.	 Character as QTL - Grain quality								
2521	qSW-1-2 (qSW1-2)	qSW-1-2 (qSW1-2)	seed weight (QTL)-1-2	seed weight (QTL)-1-2			1	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers C2340 and C86.	 Character as QTL - Grain quality								
2522	qSW-1-3 (qSW1-3)	qSW-1-3 (qSW1-3)	seed weight (QTL)-1-3	seed weight (QTL)-1-3			1	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 1 flanked by molecular markers G359 and RG532.	 Character as QTL - Grain quality								
2523	qSW-3-1 (qSW3-1)	qSW-3-1 (qSW3-1)	seed weight (QTL)-3-1	seed weight (QTL)-3-1			3	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C746 and C944.	 Character as QTL - Grain quality								
2524	qSW-3-2 (qSW3-2)	qSW-3-2 (qSW3-2)	seed weight (QTL)-3-2	seed weight (QTL)-3-2			3	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 3 flanked by molecular markers C1087 and RZ403.	 Character as QTL - Grain quality								
2525	qSW-5-1 (qSW5-1)	qSW-5-1 (qSW5-1)	seed weight (QTL)-5-1	seed weight (QTL)-5-1			5	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 5 flanked by molecular markers R3166 and RG360.	 Character as QTL - Grain quality								
2526	qSW-8-1 (qSW8-1)	qSW-8-1 (qSW8-1)	seed weight (QTL)-8-1	seed weight (QTL)-8-1			8	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 8 flanked by molecular markers R1394 and G2132.	 Character as QTL - Grain quality								
2527	qSW-9-1 (qSW9-1)	qSW-9-1 (qSW9-1)	seed weight (QTL)-9-1	seed weight (QTL)-9-1			9	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 9 flanked by molecular markers RM257 and RM242.	 Character as QTL - Grain quality								
2528	qSW-11-1 (qSW11-1)	qSW-11-1 (qSW11-1)	seed weight (QTL)-11-1	seed weight (QTL)-11-1			11	This QTL controls seed weight in relation to seedling vigor, being located on chromosome 11 flanked by molecular markers G44 and G257.	 Character as QTL - Grain quality								
2529	HWE2	OsHWE2, OsEAF6/HWE2, OsEAF6, EAF6, HWS1, OsHWS1	HYBRID WEAKNESS E2	hybrid weakness e2, hybrid weakness-e2, Esa1-associated factor 6, Hybrid Weakness and Sterility 1		hwe2, hwe2-j, Hwe2-i, HWS1CG14, hwe1, hws1WYJ7	1	This gene causes hybrid weakness complementarily with hwe1 gene. The hwe2 gene is located on chromosome 1 flanked by RFLP markers R3192 and C1211.HWS1 in Liao et al. 2024.  GO:1902562: H4 histone acetyltransferase complex. GO:0080186: developmental vegetative growth.  GO:0061458: reproductive system development.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os01g0233400	LOC_Os01g13250.1				GO:0046890 - regulation of lipid biosynthetic process, GO:0006325 - chromatin organization, GO:0016573 - histone acetylation, GO:0000123 - histone acetyltransferase complex, GO:0005634 - nucleus, GO:0051301 - cell division, GO:0051321 - meiotic cell cycle, GO:0007276 - gamete generation, GO:0007275 - multicellular organismal development, GO:0048232 - male gamete generation, GO:0007292 - female gamete generation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006772 - thiamin metabolic process, GO:0006768 - biotin metabolic process, GO:0009553 - embryo sac development, GO:0009791 - post-embryonic development, GO:0009558 - cellularization of the embryo sac, GO:0032368 - regulation of lipid transport, GO:0010584 - pollen exine formation, GO:0048658 - tapetal layer development, GO:0048544 - recognition of pollen, GO:0040029 - regulation of gene expression, epigenetic, GO:0001709 - cell fate determination	TO:0000053 - pollen sterility, TO:0000455 - seed set percent, TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000416 - embryosac abortion, TO:0000576 - stem length, TO:0000357 - growth and development trait, TO:0000499 - flower anatomy and morphology trait, TO:0000223 - pistil anatomy and morphology trait, TO:0000495 - chlorophyll content, TO:0000036 - hybrid incompatibility, TO:0000456 - spikelet number, TO:0000209 - palea number, TO:0000214 - anther shape, TO:0006032 - panicle size	PO:0009051 - spikelet , PO:0009046 - flower , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0025034 - leaf 
2530	qGYD-1-1	qGYD-1-1	grain yield per plant (QTL)-1-1	grain yield per plant (QTL)-1-1			1	This QTL controls grain yield per plant, being located on chromosome 1 flanked by DNA markers RG532 and RM81A.	 Character as QTL - Yield and productivity								
2531	qGYD-1-2	qGYD-1-2	grain yield per plant (QTL)-1-2	grain yield per plant (QTL)-1-2			1	This QTL controls grain yield per plant, being located on chromosome 1 flanked by DNA markers RZ538 and RG381.	 Character as QTL - Yield and productivity								
2532	qGYD-6-1	qGYD-6-1	grain yield per plant (QTL)-6-1	grain yield per plant (QTL)-6-1			6	This QTL controls grain yield per plant, being located on chromosome 6 flanked by RZ398 and RM204.	 Character as QTL - Yield and productivity								
2533	qGYD-7-1	qGYD-7-1	grain yield per plant (QTL)-7-1	grain yield per plant (QTL)-7-1			7	This QTL controls grain yield per plant, being located on chromosome 7 flanked by RZ471 and RZ753.	 Character as QTL - Yield and productivity								
2534	qGYD-7-2	qGYD-7-2	grain yield per plant (QTL)-7-2	grain yield per plant (QTL)-7-2			7	This QTL controls grain yield per plant, being located on chromosome 7 flanked by DNA markers RZ753 and RZ264.	 Character as QTL - Yield and productivity								
2535	qGYD-10	qGYD-10	grain yield per plant (QTL)-10	grain yield per plant (QTL)-10			10	This QTL controls grain yield per plant, being located on chromosome 10 flanked by DNA markers RM228 and RM18A.	 Character as QTL - Yield and productivity								
2536	qNP-6-1 (NP-6)	qNP-6-1 (NP-6)	number of panicles per plant (QTL)-6-1	number of panicles per plant (QTL)-6-1			6	This QTL controls number of panicles per plant, being located on chromosome 6 flanked by DNA markers RZ450 and RZ588.	 Character as QTL - Yield and productivity								
2537	qNFGP-1-1	qNFGP-1-1	number of filled grains per panicle (QTL)-1-1	number of filled grains per panicle (QTL)-1-1			1	This QTL controls number of filled grains per panicle, being located on chromosome 1 flanked by DNA markers RM1 and RG532.	 Character as QTL - Yield and productivity								
2538	qNFGP-1-2	qNFGP-1-2	number of filled grains per panicle (QTL)-1-2	number of filled grains per panicle (QTL)-1-2			1	This QTL controls number of filled grains per panicle, being located on chromosome 1 flanke by DNA markers RZ538 and RG381.	 Character as QTL - Yield and productivity								
2539	qNFGP-3-1	qNFGP-3-1	number of filled grains per panicle (QTL)-3-1	number of filled grains per panicle (QTL)-3-1			3	This QTL controls number of filled grains per panicle, being located on chromosome 3 flanked by DNA markers RZ696 and RZ22.	 Character as QTL - Yield and productivity								
2540	qNFGP-5-1	qNFGP-5-1	number of filled grains per panicle (QTL)-5-1	number of filled grains per panicle (QTL)-5-1			5	This QTL controls number of filled grains per panicle, being located on chromosome 5 flanked by DNA markers RG13 and RM164.	 Character as QTL - Yield and productivity								
2541	qNFGP-5-2	qNFGP-5-2	number of filled grains per panicle (QTL)-5-2	number of filled grains per panicle (QTL)-5-2			5	This QTL controls number of filled grains per panicle, being located on chromosome 5 flanked by DNA markers RG470 and RZ70.	 Character as QTL - Yield and productivity								
2542	qNFGP-6	qNFGP-6	number of filled grains per panicle (QTL)-6	number of filled grains per panicle (QTL)-6			6	This QTL controls number of filled grains per panicle, being located on chromosome 6 flanked by DNA markers RZ516 and RM217.	 Character as QTL - Yield and productivity								
2543	qNFGP-7-1	qNFGP-7-1	number of filled grains per panicle (QTL)-7-1	number of filled grains per panicle (QTL)-7-1			7	This QTL controls number of filled grains per panicle, being located on chromosome 7 flanked by DNA markers RZ471 and RZ753.	 Character as QTL - Yield and productivity								
2544	qNFGP-7-2	qNFGP-7-2	number of filled grains per panicle (QTL)-7-2	number of filled grains per panicle (QTL)-7-2			7	This QTL controls number of filled grains per panicle, being located on chromosome 7 flanked by DNA markers RZ264 and RZ626.	 Character as QTL - Yield and productivity								
2545	qTNSP-1-1	qTNSP-1-1	total number of spikelets per panicle (QTL)-1-1	total number of spikelets per panicle (QTL)-1-1			1	This QTL controls total number of spikelets per panicle, being located on chromosome 1 flanked by DNA markers RM1 and RG532.	 Character as QTL - Yield and productivity								
2546	qTNSP-2-2	qTNSP-2-2	total number of spikelets per panicle (QTL)-2-2	total number of spikelets per panicle (QTL)-2-2			2	This QTL controls total number of spikelets per panicle, being located on chromosome 2 flanked by DNA markers RM263 and RM240.	 Character as QTL - Yield and productivity								
2547	qTNSP-5	qTNSP-5	total number of spikelets per panicle (QTL)-5	total number of spikelets per panicle (QTL)-5			5	This QTL controls total number of spikelets per panicle, being located on chromosome 5 flanked by DNA markers RG13 and RM164.	 Character as QTL - Yield and productivity								
2548	qTNSP-6	qTNSP-6	total number of spikelets per panicle (QTL)-6	total number of spikelets per panicle (QTL)-6			6	This QTL controls total number of spikelets per panicle, being located on chromosome 6 flanked by DNA markers RG138 and RM253.	 Character as QTL - Yield and productivity								
2549	qTNSP-7	qTNSP-7	total number of spikelets per panicle (QTL)-7	total number of spikelets per panicle (QTL)-7			7	This QTL controls total number of spikelets per panicle, being located on chromosome 7 flanked by DNA markers RZ471 and RZ753.	 Character as QTL - Yield and productivity								
2550	qTNSP-9	qTNSP-9	total number of spikelets per panicle (QTL)-9	total number of spikelets per panicle (QTL)-9			9	This QTL controls total number of spikelets per panicle, being located on chromosome 9 flanked by DNA markers RM201 and RG662.	 Character as QTL - Yield and productivity								
2551	qSF-1(t)	qSF-1(t)	spikelet fertility (QTL)-1(t)	spikelet fertility (QTL)-1(t)			1	This QTL controls spikelet fertility, being located on chrosmosome 1 flanked by DNA markers RZ730 and RZ538.	 Character as QTL - Seed sterility								
2552	qSF-10-1(t)	qSF-10-1(t)	spikelet fertility (QTL)-10-1(t)	spikelet fertility (QTL)-10-1(t)			10	This QTL controls spikelet fertility, being located on chromosome 10 flanked by DNA markers RM258 and RZ811.	 Character as QTL - Seed sterility								
2553	qTGWT-1-1	qTGWT-1-1	1000-grain weight (QTL)-1-1	1000-grain weight (QTL)-1-1			1	This QTL controls 1000-grain weight, being located on chromosome 1 flanked by DNA markers RG532 and RM81A.	 Character as QTL - Yield and productivity								
2554	qTGWT-2-2(t)	qTGWT-2-2(t)	1000-grain weight (QTL)-2-2(t)	1000-grain weight (QTL)-2-2(t)			2	This QTL controls 1000-grain weight, being located on chromosome 2 flanked by DNA markers RM240 and RZ123.	 Character as QTL - Yield and productivity								
2555	qTGWT-3-1(t)	qTGWT-3-1(t)	1000-grain weight (QTL)-3-1(t)	1000-grain weight (QTL)-3-1(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 flanked by DNA markers RM232 and RM218.	 Character as QTL - Yield and productivity								
2556	qTGWT-3-2(t)	qTGWT-3-2(t)	1000-grain weight (QTL)-3-2(t)	1000-grain weight (QTL)-3-2(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 flanked by DNA markers RM168 and RZ448.	 Character as QTL - Yield and productivity								
2557	qTGWT-4-1(t) (qTGWT-4)	qTGWT-4-1(t) (qTGWT-4)	1000-grain weight (QTL)-4-1(t)	1000-grain weight (QTL)-4-1(t)			4	This QTL controls 1000-grain weight, being located on chromosome 4 flanked by DNA markers RZ86 and RG454.	 Character as QTL - Yield and productivity								
2558	qTGWT-5-1(t) (qTGWT-5)	qTGWT-5-1(t) (qTGWT-5)	1000-grain weight (QTL)-5-1(t)	1000-grain weight (QTL)-5-1(t)			5	This QTL controls 1000-grain weight, being located on chromosome 5 flanked by DNA markers RG573 and RG470.	 Character as QTL - Yield and productivity								
2559	qTGWT-6-1(t) (qTGWT-6)	qTGWT-6-1(t) (qTGWT-6)	1000-grain weight (QTL)-6-1(t)	1000-grain weight (QTL)-6-1(t)			6	This QTL controls 1000-grain weight, being located on chromosome 6 flanked by DNA markers RZ667 and B10.	 Character as QTL - Yield and productivity								
2560	qTGWT-10-1(t) (qTGWT-10)	qTGWT-10-1(t) (qTGWT-10)	1000-grain weight (QTL)-10-1(t)	1000-grain weight (QTL)-10-1(t)			10	This QTL controls 1000-grain weight, being located on chromosome 10 flanked by DNA markers RG561 and RM228.	 Character as QTL - Yield and productivity								
2561	qGYD-2 (GYD-2)	qGYD-2 (GYD-2)	grain yield per plant (QTL)-2	grain yield per plant (QTL)-2			2	This QTL controls grain yield per plant, being located on chromosome 2 flanked by DNA markers RZ123 and RM208. This QTL shows additive-by additive interaction with qGYD-7-3.	 Character as QTL - Yield and productivity								
2562	qGYD-6-2 (GDY-6-2)	qGYD-6-2 (GDY-6-2)	grain yield per plant (QTL)-6-2	grain yield per plant (QTL)-6-2			6	This QTL controls grain yield per plant, being located on chromosome 6 flanked by DNA markers RZ828 and RG653. This QTL shows additive-by-additive interaction with qGYD-1-2.	 Character as QTL - Yield and productivity								
2563	qGYD-7-3 (GYD-7-3)	qGYD-7-3 (GYD-7-3)	grain yield per plant (QTL)-7-3	grain yield per plant (QTL)-7-3			7	This QTL controls grain yield per plant, being located on chromosome 7 flanked by DNA markers RZ989 and RM248. This QTL shows additive-by-additive interaction with qGYD-2.	 Character as QTL - Yield and productivity								
2564	qNP-1-1 (NP-1)	qNP-1-1 (NP-1)	number of panicles per plant (QTL)-1-1	number of panicles per plant (QTL)-1-1			1	This QTL controls number of panicles per plant, being located on chromosome 1 flanked by DNA markers RG381 and RG236.	 Character as QTL - Yield and productivity								
2565	qNP-2-1 (NP-2-1)	qNP-2-1 (NP-2-1)	number of panicles per plant (QTL)-2-1	number of panicles per plant (QTL)-2-1			2	This QTL controls number of panicles per plant, being located on chromosome 2 flanked by DNA markers RG555 and RZ915.	 Character as QTL - Yield and productivity								
2566	qNP-2-2 (NP-2-2)	qNP-2-2 (NP-2-2)	number of panicles per plant (QTL)-2-2	number of panicles per plant (QTL)-2-2			2	This QTL controls number of panicles per plant, being located on chromosome 2 flanked by DNA markers  RM262 and RZ717.	 Character as QTL - Yield and productivity								
2567	qNP-3-1 (NP-3-1)	qNP-3-1 (NP-3-1)	number of panicles per plant (QTL)-3-1	number of panicles per plant (QTL)-3-1			3	This QTL controls number of panicles per plant, being located on chromosome 3 flanked by DNA markers RM232 and RM218.	 Character as QTL - Yield and productivity								
2568	qNP-3-2 (NP-3-2)	qNP-3-2 (NP-3-2)	number of panicles per plant (QTL)-3-2	number of panicles per plant (QTL)-3-2			3	This QTL controls number of panicles per plant, being located on chromosome 3 flanked by DNA markers RZ328 and RZ575.	 Character as QTL - Yield and productivity								
2569	qNP-5-1 (NP-5)	qNP-5-1 (NP-5)	number of panicles per plant (QTL)-5-1	number of panicles per plant (QTL)-5-1			5	This QTL controls number of panicles per plant, being located on chromosome 5 flanked by DNA markers RZ296 and RG13.	 Character as QTL - Yield and productivity								
2570	qNFGP-3-2 (NFGP-3-2)	qNFGP-3-2 (NFGP-3-2)	number of filled grains per panicle (QTL)-3-2	number of filled grains per panicle (QTL)-3-2			3	This QTL controls number of filled grains per panicle, being located on chromosome 3 flanked by DNA markers RZ613 and RG418A. This QTL shows additivi-by-additive interaction with qNFGP-7-2.	 Character as QTL - Yield and productivity								
2571	qNFGP-4 (NFGP-4)	qNFGP-4 (NFGP-4)	number of filled grains per panicle (QTL)-4	number of filled grains per panicle (QTL)-4			4	This QTL controls number of filled grains per panicle, being located on chromosome 4 flanked by DNA markers RG214 and RG620. This QTL shows additive-by-additive interaction with qNFGP-6.	 Character as QTL - Yield and productivity								
2572	qTNSP-1-2 (TNSP-1-2)	qTNSP-1-2 (TNSP-1-2)	total number of spikelets per panicle (QTL)-1-2	total number of spikelets per panicle (QTL)-1-2			1	This QTL controls total number of spikelets per panicle, being located on chromosome 1 flanked by DNA markers RG146 and RZ154. It shows additive-by-additive epistasis interaction with qTNSP-7.	 Character as QTL - Yield and productivity								
2573	qTNSP-2-1 (TNSP-2-1)	qTNSP-2-1 (TNSP-2-1)	total number of spikelets per panicle (QTL)-2-1	total number of spikelets per panicle (QTL)-2-1			2	This QTL controls total number of spikelets per panicle, being located on chromosome 2 flanked by DNA markers RM71 and RZ324. It shows additive-by-additive epistatic interaction with qTNSP-6.	 Character as QTL - Yield and productivity								
2574	qTGWT-1-2 (TGWT-1-2)	qTGWT-1-2 (TGWT-1-2)	1000-grain weight (QTL)-1-2	1000-grain weight (QTL)-1-2			1	This QTL controls 1000-grain weight, being located on chromosome 2 flanked by DNA markers RG146 and RZ154. It shows additive-by-accitive epistatic interaction with qTGWT-1-3.	 Character as QTL - Yield and productivity								
2575	qTGWT-2-1(t) (TGWT-2-1)	qTGWT-2-1(t) (TGWT-2-1)	1000-grain weight (QTL)-2-1(t)	1000-grain weight (QTL)-2-1(t)			2	This QTL controls 1000-grain weight, being located on chromosome 2 flanked by DNA markers RZ401 and RZ318. It shows additive-by-additive epistatic interaction with qTGWT-5.	 Character as QTL - Yield and productivity								
2576	qTGWT-1-3 (TGWT-1-3)	qTGWT-1-3 (TGWT-1-3)	1000-grain weight (QTL)-1-3	1000-grain weight (QTL)-1-3			1	This QTL controls 1000-grain weight, being located on chromosome 1 flanked by DNA markers RZ730 and RZ538. It shows additive-by-additive epistatic interactions with qTGWT-1-1 and qTGWT-1-2.	 Character as QTL - Yield and productivity								
2577	RSB1	Rsb1, Rsb1*, RRS3	SHEATH BLIGHT RESISTANCE 1	rice sheath blight resistance1, rice sheath blight resistance 1, Rhizoctonia solani (sheath blight) resistance-3, Sheath blight resistance-3			5	This dominant gene is resistant to rice sheath blight (Rhizoctonia solani Kuhn). It is mapped on chromosome 5. PO:0020104; leaf sheath.	 Tolerance and resistance - Disease resistance			GR:0061321			GO:0009620 - response to fungus	TO:0000255 - sheath blight disease resistance	PO:0020104 - leaf sheath 
2578	qALCR-12-1 (QAlCr12.1)	qALCR-12-1 (QAlCr12.1)	control root length (QTL)-12-1	control root length (QTL)-12-1			12	This QTL controls root length under the non-stress Al condition in relation to aluminum tolerance, being located on chromosome 12 flanked by RFLP markers RG341 and RZ397.	 Tolerance and resistance - Stress tolerance								
2579	qALSR-2-1 (QAlSr2.1)	qALSR-2-1 (QAlSr2.1)	stress root length (QTL)-2-1	stress root length (QTL)-2-1			2	This QTL controls root length under Al stress conditions in relation to aluminum tolerance, being located on chromosome 2 flanked by RFLP markers RG139 and RG324.	 Tolerance and resistance - Stress tolerance								
2580	qALSR-3-1 (QAlSr3.1)	qALSR-3-1 (QAlSr3.1)	stress root length (QTL)-3-1	stress root length (QTL)-3-1			3	This QTL controls root length under Al stress conditions in relation to aluminum tolerance, being located on chromosome 3 flanked by RFLP markers CDO1395 and RG391.	 Tolerance and resistance - Stress tolerance								
2581	qALSR-8-1 (QAlSr8.1)	qALSR-8-1 (QAlSr8.1)	stress root length (QTL)-8-1	stress root length (QTL)-8-1			8	This QTL controls root length under Al stress conditions in relation to aluminum tolerance, being located on chromosome 8 flanked by RFLP markers RG28 and RM223.	 Tolerance and resistance - Stress tolerance								
2582	qALRR-1-1 (QAlRr1.1)	qALRR-1-1 (QAlRr1.1)	relative root length (QTL)-1-1	relative root length (QTL)-1-1			1	This QTL controls relative root length (ratio of root length under stress over non-stress conditions)  in relation to aluminum tolerance, being located on chromosome 1 flanked by RFLP markers RG406 and RZ252.	 Tolerance and resistance - Stress tolerance								
2583	qALRR-3-1 (QAlRr3.1)	qALRR-3-1 (QAlRr3.1)	relative root length (QTL)-3-1	relative root length (QTL)-3-1			3	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 3 flanked by RFLP markers CDO1 95 and RG391.	 Tolerance and resistance - Stress tolerance								
2584	qALRR-7-1 (QAlRr7.1)	qALRR-7-1 (QAlRr7.1)	relative root length (QTL)-7-1	relative root length (QTL)-7-1			7	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 7 flanked by RFLP markers RZ629 and RG650.	 Tolerance and resistance - Stress tolerance								
2585	qALRR-8-1 (QAlRr8.1)	qALRR-8-1 (QAlRr8.1)	relative root length (QTL)-8-1	relative root length (QTL)-8-1			8	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 8 flanked by RG26 and RM223.	 Tolerance and resistance - Stress tolerance								
2586	qALRR-9-1 (QAlRr9.1)	qALRR-9-1 (QAlRr9.1)	relative root length (QTL)-9-1	relative root length (QTL)-9-1			9	This QTL controls relative root length (ratio of root length under Al stress over non-stress conditions) in relation to aluminum tolerance, being located on chromosome 9 flanked by RFLP markers RM201 and WALI7.	 Tolerance and resistance - Stress tolerance								
2587	PI24	Pi24(t), Pi-24(t), Pi-24, Pi24	PYRICULARIA ORYZAE RESISTANCE 24	Pyricularia oryzae resistance-24(t), Magnaporthe grisea resistance 24(t), Blast resistance 24(t)			1	Dominant gene for blast resistance. It is located on chromosome 1 closely linked with marker K5. Original line is Azucena.	 Tolerance and resistance - Disease resistance					64.4	GO:0009620 - response to fungus		
2588	PI25	Pi25(t), Pi-25(t)	PYRICULARIA ORYZAE RESISTANCE 25	Pyricularia oryzae resistance-25(t), Blast resistance 25, Blast resistance 25			2	Dominant gene for blast resistance. It is located on chromosome 2, being closely linked with marker RG520. This gene may be the same as Pi-tq5. Original line is IR64 (Indica). Map position (157.9 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
2589	PI27	Pi27(t), Pi-27(t)	PYRICULARIA ORYZAE RESISTANCE 27	Pyricularia oryzae resistance-27(t), Magnaporthe grisea resistance 27, Blast resistance 27			6	Dominant gene for blast resistance. It is located on chromosome 6, being closely linked with a marker EST-2. Original line is IR64 (Indica).	 Tolerance and resistance - Disease resistance					51.9	GO:0009620 - response to fungus		
2590	PI26	Pi26(t), Pi-26(t)	PYRICULARIA ORYZAE RESISTANCE 26	Pyricularia oryzae resistance 26, Magnaporthe grisea resistance 26, Blast resistance 26			5	Dominant gene for blast resistance. It is located on chromosome 5, being closely linked with marker RG313. Map position (22.5-24.7 cM). Original line is Azucena (Japonica).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
2591	PI28	Pi28(t), Pi-28(t)	PYRICULARIA ORYZAE RESISTANCE 28	Pyricularia oryzae resistance-28(t), Magnaporthe grisea resistance 28, Blast resistance 28			10	Dominant gene for blast resistance. It is located on chromosome 10, being closely linked with marker RZ500. Original line is IR64 (Indica) x Azucena (Japonica).	 Tolerance and resistance - Disease resistance					114.7	GO:0009620 - response to fungus		
2592	qCTB-2-1(t) (qCTB2a)	qCTB-2-1(t) (qCTB2a)	cold resistance (QTL)-2-1	cold resistance (QTL)-2-1			2	This QTL controls cold resistance at booting stage measured by spilelet fertility. It is located on chromosome 2 flanked by markers RM324 and RM301.	 Tolerance and resistance - Stress tolerance								
2593	qCTB-9(t) (qCTB9)	qCTB-9(t) (qCTB9)	cold resistance (QTL)-9	cold resistance (QTL)-9			9	This QTL controls cold resistance at booting stage measured by spilelet fertility, being located on chromosome 9 flanked by markers RM257 and RM242.	 Tolerance and resistance - Stress tolerance								
2594	qCTB-1(t)  (qCTB1)	qCTB-1(t)  (qCTB1)	cold resistance (QTL)-1	cold resistance (QTL)-1			1	This QTL controls cold resistance at booting stage measured by spikelet fertility, being located on chromosome 1 flanked by markers RM151 and RM259.	 Tolerance and resistance - Stress tolerance								
2595	qCTB-2-2(t) (qCTB2b)	qCTB-2-2(t) (qCTB2b)	cold resitance (QTL)-2-2	cold resitance (QTL)-2-2			2	This QTL controls cold resistance at the booting stage measured by spikelet fertility, being located on chromosome 2 flanked by RM324 and RM301.	 Tolerance and resistance - Stress tolerance								
2596	qCTB-3(t) (qCTB3)	qCTB-3(t) (qCTB3)	cold resistance (QTL)-3(t)	cold resistance (QTL)-3(t)			3	This QTL controls cold resistance at the booting stage measured by spikelet fertility, being located on chromosome 3 flanked by markers RM156 and RM214.	 Tolerance and resistance - Stress tolerance								
2597	qCTB-5(t) (qCTB5)	qCTB-5(t) (qCTB5)	cold resistance (QTL)-5(t)	cold resistance (QTL)-5(t)			5	This QTL controls cold resistance at the booting stage, being located on chromosome 5 flanked by markers RM26 and RM334.	 Tolerance and resistance - Stress tolerance								
2598	qCTB-6 (t) (qCTL6)	qCTB-6 (t) (qCTL6)	cold resistance (QTL)-6(t)	cold resistance (QTL)-6(t)			6	This QTL controls cold resistance at the booting stage, being located on chromosome 6 flanked by markers RM50 and RM173.	 Tolerance and resistance - Stress tolerance								
2599	qCTB-7(t) (qCTB7)	qCTB-7(t) (qCTB7)	cold resistance (QTL)-7(t)	cold resistance (QTL)-7(t)			7	This QTL controls cold resistance at the booting stage, being located on chromosome 7 flanked by markers RM129 and RM81b.	 Tolerance and resistance - Stress tolerance								
2600	qCTB-12(t) (qCTB12)	qCTB-12(t) (qCTB12)	cold resistance (QTL)-12(t)	cold resistance (QTL)-12(t)			12	This QTL controls cold resistance at the booting stage, being located on chromosome 12 flanked by markers RM292 and RM260.	 Tolerance and resistance - Stress tolerance								
2602	GLU4	glu4a	GLUTELIN 4	rice glutelin-4a	GLUTELIN 4		1	This is the allele for glu4 (GluA-1) gene. This allele encodes polypeptide pI6.50/α-1 with deletion of pI6.71/α-2.	 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
2603	qHD-3-3(t) (QHd3)	qHD-3-3(t) (QHd3)	heading date (QTL)-3-3(t)	heading date (QTL)-3-3(t)			3	This QTL controls heading date, being located on chromosome 3 flanked by RFLP markers C515 and RG348a.	 Reproductive organ - Heading date								
2604	qHD-4(t)(QHd4)	qHD-4(t)(QHd4)	heading date (QTL)-4(t)	heading date (QTL)-4(t)			4	This QTL controls heading date, being located on chromosome 4 flanked by RFLP markers RZ590b and RG214.	 Reproductive organ - Heading date								
2605	qHD-7-5(t)(QHd7)	qHD-7-5(t)(QHd7)	heading date (QTL)-7-5(t)	heading date (QTL)-7-5(t)			7	This QTL controls heading date, being located on chromosome 7 flanked by RFLP markers C586 and CDO405.	 Reproductive organ - Heading date								
2606	qHD-8-1(t) (QHd8)	qHD-8-1(t) (QHd8)	heading date (QTL)-8-1(t)	heading date (QTL)-8-1(t)			8	This QTL controls heading date, being located on chromosome 8 flanked by RFLP markers G104 and G1314a.	 Reproductive organ - Heading date								
2607	qHD-11-2(t)(QHd11)	qHD-11-2(t)(QHd11)	heading date (QTL)-11-2(t)	heading date (QTL)-11-2(t)			11	This QTL controls heading date, being located on chromosome 11 flanked by RFLP markers RZ537b and RG16.	 Reproductive organ - Heading date								
2608	qHD-12-1(t)(QHd12)	qHD-12-1(t)(QHd12)	heading date (QTL)-12-1(t)	heading date (QTL)-12-1(t)			12	This QTL controls heading date, being located on chromosome 12 flanked by RFLP markers RG901a and G402.	 Reproductive organ - Heading date								
2609	qPH-3-3(t) (QPh3a)	qPH-3-3(t) (QPh3a)	plant height (QTL)-3-3(t)	plant height (QTL)-3-3(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by RFLP markers RG104 and C515.	 Vegetative organ - Culm								
2610	qPH-3-4(t) (QPh3b, QPh3a)	qPH-3-4(t) (QPh3b, QPh3a)	plant height (QTL)-3-4(t)	plant height (QTL)-3-4(t)			3	This QTL controls plant height, being located on chromosome 3 flanked be RFLP markers RZ284 and RZ403b.	 Vegetative organ - Culm								
2611	qPH-4-2(t) (QPh4)	qPH-4-2(t) (QPh4)	plant height (QTL)-4-2(t)	plant height (QTL)-4-2(t)			4	This QTL controls plant height, being located on chromosome 4 flanked by Ph (Phenol staining) locus and RFLP marker G379.	 Vegetative organ - Culm								
2612	qPH-6-1(t) (QPh6)	qPH-6-1(t) (QPh6)	plant height (QTL)-6-1(t)	plant height (QTL)-6-1(t)			6	This QTL controls plant height, being located on chromosome 6 flanked by RFLP markers HHU37 and RZ682.	 Vegetative organ - Culm								
2613	qPH-8-1(t) (QPh8)	qPH-8-1(t) (QPh8)	plant height (QTL)-8-1(t)	plant height (QTL)-8-1(t)			8	This QTL controls plant height, being located on chromosome 8 flanked by RFLP markers CSU754 and G104.	 Vegetative organ - Culm								
2614	qFLL-2-1(t) (QFll2)	qFLL-2-1(t) (QFll2)	flag leaf length (QTL)-2-1(t)	flag leaf length (QTL)-2-1(t)			2	This QTL controls flag leaf length, being located on chromosome 2 flanked by RFLP markers RG520 and RZ446b.	 Character as QTL - Plant growth activity								
2615	qFLL-3-1(t) (QFll3)	qFLL-3-1(t) (QFll3)	flag leaf length (QTL)-3-1(t)	flag leaf length (QTL)-3-1(t)			3	This QTL controls flag leaf length, being located on chromosome 3 flanked by RFLP markers G249 and RG418.	 Character as QTL - Plant growth activity								
2616	qFLW-1-1(t) (QFlw1)	qFLW-1-1(t) (QFlw1)	flag leaf width (QTL)-1-1(t)	flag leaf width (QTL)-1-1(t)			1	This QTL controls flag leaf width, being located on chromosome 1 flanked by RFLP markers C131 and RG472.	 Vegetative organ - Leaf								
2617	qFLW-4-1(t) (QFlw4)	qFLW-4-1(t) (QFlw4)	flag leaf width (QTL)-4-1(t)	flag leaf width (QTL)-4-1(t)			4	This QTL controls flag leaf width, being located on chromosome 4 flanked by Ph (Phenol staining) locus and RFLP marker G379.	 Vegetative organ - Leaf								
2618	qFLW-6-1(t) (QFlw6)	qFLW-6-1(t) (QFlw6)	flag leaf width (QTL)-6-1(t)	flag leaf width (QTL)-6-1(t)			6	This QTL controls flag leaf width, being located on chromosome 6 flanked by RFLP markers RZ682 and C236.	 Vegetative organ - Leaf								
2619	qFLW-8-1(t) (QFlw8)	qFLW-8-1(t) (QFlw8)	flag leaf width (QTL)-8-1(t)	flag leaf width (QTL)-8-1(t)			8	This QTL controls flag leaf width, being located on chromosome 8 flanked by RFLP markers G56a and R662a.	 Vegetative organ - Leaf								
2620	qFLW-12-1(t) (QFlw12)	qFLW-12-1(t) (QFlw12)	flag leaf width (QTL)-12-1(t)	flag leaf width (QTL)-12-1(t)			12	This QTL controls flag leaf width, being located on chromosome 12 flanked by RFLP markers RG341a and RG869.	 Vegetative organ - Leaf								
2621	qPL-2-1(t) (QPl2)	qPL-2-1(t) (QPl2)	panicle length (QTL)-2-1(t)	panicle length (QTL)-2-1(t)			2	This QTL controls panicle length, being located on chromosome 2 flanked by RFLP markers RG520 and RZ446b.	 Reproductive organ - Inflorescence								
2622	qPL-8-1(t) (QPl8)	qPL-8-1(t) (QPl8)	panicle length (QTL)-8-1(t)	panicle length (QTL)-8-1(t)			8	This QTL controls panicle length, being located on chromosome 8 flanked by RFLP markers CSU754 and G104.	 Reproductive organ - Inflorescence								
2623	qPL-10-1(t) (QPl10)	qPL-10-1(t) (QPl10)	panicle length (QTL)-10-1(t)	panicle length (QTL)-10-1(t)			10	This QTL controls panicle length, being located on chromosome 10 flanked by RFLP markers CDO98 and RG752.	 Reproductive organ - Inflorescence								
2624	qSN-1-1(t) (QSn1)	qSN-1-1(t) (QSn1)	spikelet number per panicle (QTL)-1-1(t)	spikelet number per panicle (QTL)-1-1(t)			1	This QTL controls spikelet number per panicle, being located on chromosome 1 flanked by RFLP markers RG236 and RZ801.	 Reproductive organ - Inflorescence								
2625	qSN-3-1(t) (QSn3)	qSN-3-1(t) (QSn3)	spikelet number per panicle (QTL)-3-1(t)	spikelet number per panicle (QTL)-3-1(t)			3	This QTL controls spikelet number per panicle, being located on chromosome 3 flanked by RFLP markers G249 and RG418.	 Reproductive organ - Inflorescence								
2626	qSN-6-1(t) (QSn6)	qSN-6-1(t) (QSn6)	spikelet number per panicle (QTL)-6-1(t)	spikelet number per panicle (QTL)-6-1(t)			6	This QTL controls spikelet number per panicle, being located on chromosome 6 flanked by RFLP markers RG653 and RZ508.	 Reproductive organ - Inflorescence								
2627	qSN-11-1(t) (QSn11)	qSN-11-1(t) (QSn11)	spikelet number per panicle (QTL)-11-1(t)	spikelet number per panicle (QTL)-11-1(t)			11	This QTL controls spikelet number per panicle, being located on chromosome 11 flanked by RFLP markers RZ900 and G44.	 Reproductive organ - Inflorescence								
2628	qSF-3-1(t) (QSf3)	qSF-3-1(t) (QSf3)	spikelet fertility (QTL)-3-1(t)	spikelet fertility (QTL)-3-1(t)			3	This QTL controls spikelet fertility, being located on chromosome 3 flanked by RFLP markers RG348a and C636x.	 Character as QTL - Yield and productivity								
2629	qSF-5-1(t) (QSf5)	qSF-5-1(t) (QSf5)	spikelet fertility (QTL)-5-1(t)	spikelet fertility (QTL)-5-1(t)			5	This QTL controls spikelet fertility, being located on chromosome 5 flanked by RFLP markers Y1049 and R569a.	 Character as QTL - Yield and productivity								
2630	qSF-6-1(t) (QSf6)	qSF-6-1(t) (QSf6)	spikelet fertility (QTL)-6(t)	spikelet fertility (QTL)-6(t)			6	This QTL controls spikelet fertility, being located on chromosome 6 flanked by RFLP marker RZ2 and C (Chromogen of anthocyanin) locus.	 Character as QTL - Yield and productivity								
2631	qSF-7-1(t) (QSf7)	qSF-7-1(t) (QSf7)	spikelet fertility (QTL)-7-1(t)	spikelet fertility (QTL)-7-1(t)			7	This QTL controls spikelet fertility, being located on chromosome 7 flanked by RFLP markers RG30 and RG29.	 Character as QTL - Yield and productivity								
2632	qSF-8-1(t) (QSf8)	qSF-8-1(t) (QSf8)	spikelet fertility (QTL)-8-1(t)	spikelet fertility (QTL)-8-1(t)			8	This QTL controls spikelet fertility, being located on chromosome 8 flanked by RFLP markers G2140 and RZ323a.	 Character as QTL - Yield and productivity								
2633	qSF-10-2(t) (QSf10)	qSF-10-2(t) (QSf10)	spikelet fertility (QTL)-10-2(t)	spikelet fertility (QTL)-10-2(t)			10	This QTL controls spikelet fertility, being located on chromosome 10 flanked by RFLP markers RG561 and C223.	 Character as QTL - Yield and productivity								
2634	qSF-11-1(t) (QSf11)	qSF-11-1(t) (QSf11)	spikelet fertility (QTL)-11-1(t)	spikelet fertility (QTL)-11-1(t)			11	This QTL controls spikelet fertility, being located on chromosome 11 flanked by RFLP markers RZ797b and RG1049d.	 Character as QTL - Yield and productivity								
2635	IM1	OsIM1, OsIM1a, OsIM2, OsIM, PTOX1	OSIMASE	OsIMase, plastid terminal oxidase 1	OSIMASE	ptox1, ptox1-1, ptox1-2	4	AOX homologous gene. AF085174 (OsIM1). AF288401 (OsIM2). A pseudo-transcript (OsIM2), which probably resulted from the abnormal splicing of the OsIM1 pre-mRNA, was also identified. OsIM1a is the same as OsIM1 except that its 3'-UTR lacked a 26-bp nucleotide sequence. GO:1901172: phytoene metabolic process. GO:1901601: strigolactone biosynthetic process. GO:2000032: regulation of secondary shoot formation. the rice ortholog of Arabidopsis thaliana IMMUTANS (IM)/Solanum lycopersicum GHOST.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0668900	LOC_Os04g57320.1, LOC_Os04g57320.2	GR:0061337			GO:0070469 - respiratory chain, GO:0022900 - electron transport chain, GO:0009507 - chloroplast, GO:0009916 - alternative oxidase activity, GO:0007585 - respiratory gaseous exchange, GO:0009579 - thylakoid, GO:0009657 - plastid organization, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0016117 - carotenoid biosynthetic process, GO:0009688 - abscisic acid biosynthetic process, GO:0046872 - metal ion binding	TO:0002639 - shoot branching, TO:0006001 - salt tolerance, TO:0000329 - tillering ability, TO:0000069 - variegated leaf, TO:0002672 - auxin content, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0000478 - abscisic acid concentration, TO:0002667 - abscisic acid content	
2636	qDTH-1-2(t)(dth1.1)	qDTH-1-2(t)(dth1.1)	days to heading (QTL)-1-2(t)	days to heading (QTL)-1-2(t)			1	This QTL controls days to heading, being located on chromosome 1 flanked by markers RZ288 and RM140.	 Reproductive organ - Heading date								
2637	qDTH-1-3(t)(dth1.2)	qDTH-1-3(t)(dth1.2)	days to heading (QTL)-1-3(t)	days to heading (QTL)-1-3(t)			1	This QTL controls days to heading, being located on chromosome 1 flanked by markers RZ730 and RZ801.	 Reproductive organ - Heading date								
2638	qDTH-2-3(t)(dth2.1)	qDTH-2-3(t)(dth2.1)	days to heading (QTL)-2-3(t)	days to heading (QTL)-2-3(t)			2	This QTL controls days to heading, being located on chromosome 2 flanked by markers RM106 and RM221.	 Reproductive organ - Heading date								
2639	qDTH-3-2(t)(dth3.1)	qDTH-3-2(t)(dth3.1)	days to heading (QTL)-3-2(t)	days to heading (QTL)-3-2(t)			3	This QTL controls days to heading, being located on chromosome 3 flanked by markers RM60 and RM231.	 Reproductive organ - Heading date								
2640	qDTH-3-3(t)(dth3.2)	qDTH-3-3(t)(dth3.2)	days to heading (QTL)-3-3(t)	days to heading (QTL)-3-3(t)			3	This QTL controls days to heading, being located on chromosome 3 flanked by markers RM7 and RM282.	 Reproductive organ - Heading date								
2641	qDTH-3-4(t)(dth3.3)	qDTH-3-4(t)(dth3.3)	days to heading (QTL)-3-4(t)	days to heading (QTL)-3-4(t)			3	This QTL controls days to heading, being located on chromosome 3 flanked by markers RM16 and RZ448.	 Reproductive organ - Heading date								
2642	qDTH-3-5(t)(dth3.4)	qDTH-3-5(t)(dth3.4)	days to heading (QTL)-3-5(t)	days to heading (QTL)-3-5(t)			3	This QTL controls days to heading, being located on chromosome 3 closely linked with marker RM130.	 Reproductive organ - Heading date								
2643	qDTH-4-3(t)(dth4.1)	qDTH-4-3(t)(dth4.1)	days to heading (QTL)-4-3(t)	days to heading (QTL)-4-3(t)			4	This QTL controls days to heading, being located on chromosome 4 closely linked with marker RM307.	 Reproductive organ - Heading date								
2644	qDTH-4-4(t)(dth4.2)	qDTH-4-4(t)(dth4.2)	days to heading (QTL)-4-4(t)	days to heading (QTL)-4-4(t)			4	This QTL controls days to heading, being located on chromosome 4 flanked by markers RZ740 and RM303.	 Reproductive organ - Heading date								
2645	qDTH-7-1	qDTH-7-1, qDTH-7-1(t)(dth7.1)	days to heading (QTL)-7-1	days to heading (QTL)-7-1			7	This QTL controls days to heading, being located on chromosome 7 flanked by markers RM125 and RM336.	 Reproductive organ - Heading date								
2646	qDTH-10-1(t)(dth10.1)	qDTH-10-1(t)(dth10.1)	days to heading (QTL)-10-1(t)	days to heading (QTL)-10-1(t)			10	This QTL controls days to heading, being located on chromosome 10 flanked by markers RM184 and RM271.	 Reproductive organ - Heading date								
2647	qGPP-1-1(t) (gpp1,1)	qGPP-1-1(t) (gpp1,1)	grains per panicle (QTL)-1-1(t)	grains per panicle (QTL)-1-1(t)			1	This QTL controls grain number per panicle as a yield component, being located on chromosome 1 flanked by markers RM283 and RM259.	 Character as QTL - Yield and productivity								
2648	qGPP-1-2(t) (gpp1.2)	qGPP-1-2(t) (gpp1.2)	grains per panicle (QTL)-1-2(t)	grains per panicle (QTL)-1-2(t)			1	This QTL controls grain numer per panicle as a yield component, being located on chromosome 1 flanked by markers RM5 and RM237.	 Character as QTL - Yield and productivity								
2649	qGPP-2-1(t) (gpp2.1)	qGPP-2-1(t) (gpp2.1)	grains per panicle (QTL)-2-1(t)	grains per panicle (QTL)-2-1(t)			2	This QTL controls grain number per panicle, being located on chromosome 2 closely linked with marker CDO718.	 Character as QTL - Yield and productivity								
2650	qGPP-3-1(t) (gpp3.1)	qGPP-3-1(t) (gpp3.1)	grains per panicle (QTL)-3-1(t)	grains per panicle (QTL)-3-1(t)			3	This QTL controls grain number per panicle as a yield component, being located on chromosome 3 flanked by markers RM130 and RG1356.	 Character as QTL - Yield and productivity								
2651	qGPP-4-1(t) (gpp4.1)	qGPP-4-1(t) (gpp4.1)	grains per panicle (QTL)-4-1(t)	grains per panicle (QTL)-4-1(t)			4	This QTL controls grain number per panicle as a yield component, being located on chromosome 4 flanked by markers RZ740 and RZ590.	 Character as QTL - Yield and productivity								
2652	qGPP-8-1(t) (gpp8.1)	qGPP-8-1(t) (gpp8.1)	grains per panicle (QTL)-8-1(t)	grains per panicle (QTL)-8-1(t)			8	This QTL controls grain number per panicle as a yield component, being located on chromosome 8 closely linked with marker RM210.	 Character as QTL - Yield and productivity								
2653	qGPP-9-1(t) (gpp9.1)	qGPP-9-1(t) (gpp9.1)	grains per panicle (QTL)-9-1(t)	grains per panicle (QTL)-9-1(t)			9	This QTL controls grain number per panicle as a yield component, being located on chromosome 9 closely linked with marker RM215.	 Character as QTL - Yield and productivity								
2654	qGPP-11-1(t) (gpp11.1)	qGPP-11-1(t) (gpp11.1)	grains per panicle (QTL)-11-1(t)	grains per panicle (QTL)-11-1(t)			11	This QTL controls grain number per panicle as a yield component, being located on chromosome 11 closely linked with marker RM254.	 Character as QTL - Yield and productivity								
2655	qGPP-12-1(t) (gpp12.1)	qGPP-12-1(t) (gpp12.1)	grains per panicle (QTL)-12-1(t)	grains per panicle (QTL)-12-1(t)			12	This QTL controls grain number per panicle as a yield component, being located on chromosome 12 closely linked with marker CDO1338.	 Character as QTL - Yield and productivity								
2656	qGPP-12-2(t) (gpp12.2)	qGPP-12-2(t) (gpp12.2)	grains per panicle (QTL)-12-2(t)	grains per panicle (QTL)-12-2(t)			12	This QTL controls grain number per panicle as a yield component, being located on chromosome 12 closely linked with marker RG869.	 Character as QTL - Yield and productivity								
2657	qSPP-1-1(t)(spp1.1)	qSPP-1-1(t)(spp1.1)	spikelets per panicle (QTL)-1-1(t)	spikelets per panicle (QTL)-1-1(t)			1	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 1 flanked by markers RM283 and RM259.	 Reproductive organ - Inflorescence								
2658	qSPP-1-2(t)(spp1.2)	qSPP-1-2(t)(spp1.2)	spikelets per panicle (QTL)-1-2(t)	spikelets per panicle (QTL)-1-2(t)			1	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 1 flanked by markers RM237 and RM128.	 Reproductive organ - Inflorescence								
2659	qSPP-2-1(t)(spp2.1)	qSPP-2-1(t)(spp2.1)	spikelets per panicle (QTL)-2-1(t)	spikelets per panicle (QTL)-2-1(t)			2	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 2 closely linked with marker CDO718.	 Reproductive organ - Inflorescence								
2660	qSPP-3-1(t)(spp3.1)	qSPP-3-1(t)(spp3.1)	spikelets per panicle (QTL)-3-1(t)	spikelets per panicle (QTL)-3-1(t)			3	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 3 flanked by markers RM130 and RG1356.	 Reproductive organ - Inflorescence								
2661	qSPP-9-1(t)(spp9.1)	qSPP-9-1(t)(spp9.1)	spikelets per panicle (QTL)-9-1(t)	spikelets per panicle (QTL)-9-1(t)			9	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 9 closely linked with marker RM215.	 Reproductive organ - Inflorescence								
2662	qSPP-12-1(t)(spp12.1)	qSPP-12-1(t)(spp12.1)	spikelets per panicle (QTL)-12-1(t)	spikelets per panicle (QTL)-12-1(t)			12	This QTL controls spikelet number per panicle as a yield component, being located on chromosome 12 closely linked with marker RG869.	 Reproductive organ - Inflorescence								
2663	qPL-1-1(t) (pl1.1)	qPL-1-1(t) (pl1.1)	panicle length (QTL)-1-1(t)	panicle length (QTL)-1-1(t)			1	This QTL controls panicle length as a yield component, being located on chromosome 1 flanked by RZ730 and RZ801.	 Reproductive organ - Inflorescence								
2664	qPL-2-2(t) (pl2.1)	qPL-2-2(t) (pl2.1)	panicle length (QTL)-2-2(t)	panicle length (QTL)-2-2(t)			2	This QTL controls panicle length as a yield component, being flanked by markers RM221 and RM250.	 Reproductive organ - Inflorescence								
2665	qPL-4-1(t) (pl4.1)	qPL-4-1(t) (pl4.1)	panicle length (QTL)-4-1(t)	panicle length (QTL)-4-1(t)			4	This QTL controls panicle length as a yield component, being located on chromosome 4 flanked by markers RM307 and RM185.	 Reproductive organ - Inflorescence								
2666	qPL-9-1(t) (pl9.1)	qPL-9-1(t) (pl9.1)	panicle length (QTL)-9-1(t)	panicle length (QTL)-9-1(t)			9	This QTL contols panicle length as a yield component, being located on chromosome 9 closely linked with marker RM215.	 Reproductive organ - Inflorescence								
2667	qPL-10-2(t) (pl10.1)	qPL-10-2(t) (pl10.1)	panicle length (QTL)-10-2(t)	panicle length (QTL)-10-2(t)			10	This QTL controls panicle length as a yield component, being located on chromosome 10 closely linked with marker RM311.	 Reproductive organ - Inflorescence								
2668	qPL-12-1(t) (pl12.1)	qPL-12-1(t) (pl12.1)	panicle length (QTL)-12-1(t)	panicle length (QTL)-12-1(t)			12	This QTL controls panicle length as a yield component, being located on chromosome 12 closely linked with marker RG901.	 Reproductive organ - Inflorescence								
2669	qPSS-1-1(t) (pss1.1)	qPSS-1-1(t) (pss1.1)	percent seed set (QTL)-1-1(t)	percent seed set (QTL)-1-1(t)			1	This QTL controls percent seed set as a yield component, being located on chromosome 1 flanked by markers RM265 and RM315.	 Character as QTL - Seed sterility								
2670	qPSS-3-1(t) (pss3.1)	qPSS-3-1(t) (pss3.1)	percent seed set (QTL)-3-1(t)	percent seed set (QTL)-3-1(t)			3	This QTL controls percent seed set as a yield component, being located on chromosome 3 closely linked with RM130.	 Character as QTL - Seed sterility								
2671	qPSS-4-1(t) (pss4.1)	qPSS-4-1(t) (pss4.1)	percent seed set (QTL)-4-1(t)	percent seed set (QTL)-4-1(t)			4	This QTL controls percent seed set as a yield component, being located on chromosome 4 flanked by markers RZ740 and RZ590.	 Character as QTL - Seed sterility								
2672	qPSS-5-1(t) (pss5.1)	qPSS-5-1(t) (pss5.1)	percent seed set (QTL)-5-1(t)	percent seed set (QTL)-5-1(t)			5	This QTL controls percent seed set as a yield component, being located on chromosome 5 closely linked with marker RM153.	 Character as QTL - Seed sterility								
2673	qPSS-5-2(t) (pss5.2)	qPSS-5-2(t) (pss5.2)	percent seed set (QTL)-5-2(t)	percent seed set (QTL)-5-2(t)			5	This QTL controls percent seed set as a yield component, being located on chromosome 5 flanked by markers RM173 and RM178.	 Character as QTL - Seed sterility								
2674	qPSS-6-1(t) (pss6.1)	qPSS-6-1(t) (pss6.1)	percent seed set (QTL)-6-1(t)	percent seed set (QTL)-6-1(t)			6	This QTL controls percent seed set as a yield component, being located on chromosome 6 flanked by markers RM276 and RM3.	 Character as QTL - Seed sterility								
2675	qPSS-10-1(t) (pss10.1)	qPSS-10-1(t) (pss10.1)	percent seed set (QTL)-10-1(t)	percent seed set (QTL)-10-1(t)			10	This QTL controls percent seed set as a yield component, being located on chromosome 10 flanked by markers CDO98 and RM333.	 Character as QTL - Seed sterility								
2676	qGW-1-1(t) (gw1.1)	qGW-1-1(t) (gw1.1)	grain weight (QTL)-1-1(t)	grain weight (QTL)-1-1(t)			1	This QTL controls grain weight as a yield component, being located on chromosome 1 flanked by markers RM104 and RG331.	 Character as QTL - Yield and productivity								
2677	qGW-2-1(t) (gw2.1)	qGW-2-1(t) (gw2.1)	grain weight (QTL)-2-1(t)	grain weight (QTL)-2-1(t)			2	This QTL controls grain weight as a yield component, being located on chromosome 2 flanked by markers RM240 and RM266.	 Character as QTL - Yield and productivity								
2678	qGW-3-2(t) (gw3.1)	qGW-3-2(t) (gw3.1)	grain weight (QTL)-3-2(t)	grain weight (QTL)-3-2(t)			3	This QTL controls grain weight as a yield component, being located on chromosome 3 flanked by markers RZ672 and RZ474.	 Character as QTL - Yield and productivity								
2679	qGW-3-3(t) (gw3.2)	qGW-3-3(t) (gw3.2)	grain weight (QTL)-3-3(t)	grain weight (QTL)-3-3(t)			3	This QTL controls grain weight as a yield component, being located on chromosome 3 flanked by markers RM130 and RG1356.	 Character as QTL - Yield and productivity								
2680	qGW-5-3(t) (gw5.1)	qGW-5-3(t) (gw5.1)	grain weight (QTL)-5-3(t)	grain weight (QTL)-5-3(t)			5	This QTL controls grain weight as a yield component, being located on chromosome 5 flanked by markers RM305 and RM173.	 Character as QTL - Yield and productivity								
2681	qGW-9-1(t) (gw9.1)	qGW-9-1(t) (gw9.1)	grain weight (QTL)-9-1(t)	grain weight (QTL)-9-1(t)			9	This QTL controls grain weight as a yield component, being located on chromosome 9 closely linked with marker RM242.	 Character as QTL - Yield and productivity								
2682	qGW-10-1(t) (gw10.1)	qGW-10-1(t) (gw10.1)	grain weight (QTL)-10-1(t)	grain weight (QTL)-10-1(t)			10	This QTL controls grain weight as a yield component, being located on chromosome 10 closely linked with marker RM311.	 Character as QTL - Yield and productivity								
2683	qGW-12-1(t) (gw12.1)	qGW-12-1(t) (gw12.1)	grain weight (QTL)-12-1(t)	grain weight (QTL)-12-1(t)			12	This QTL controls grain weight as a yield component, being located on chromosome 12 flanked by markers RG901 and RM17.	 Character as QTL - Yield and productivity								
2684	qPPL-3-1(t) (ppl3.1)	qPPL-3-1(t) (ppl3.1)	panicles per plant (QTL)-3-1(t)	panicles per plant (QTL)-3-1(t)			3	This QTL controls panicle number per plant as a yield component, being located on chromosome 3 flanked by markers RM156 and RM16.	 Character as QTL - Yield and productivity								
2685	qPPL-7-1(t) (ppl7.1)	qPPL-7-1(t) (ppl7.1)	panicles per plant (QTL)-7-1(t)	panicles per plant (QTL)-7-1(t)			7	This QTL controls panicle number per plant as a yield component, being located on chromosome 7 closely linked with marker RM234.	 Character as QTL - Yield and productivity								
2686	qYLD-2-1(t) (yld2.1)	qYLD-2-1(t) (yld2.1)	yield per plant (QTL)-2-1(t)	yield per plant (QTL)-2-1(t)			2	This QTL controls yield per plant, being located on chromosome 2 closely linked with marker CDO718.	 Character as QTL - Yield and productivity								
2687	qYLD-3-1(t) (yld3.1)	qYLD-3-1(t) (yld3.1)	yield per plant (QTL)-3-1(t)	yield per plant (QTL)-3-1(t)			3	This QTL controls yield per plant, being located on chromosome 3 flanked by markers RZ452 and RM16.	 Character as QTL - Yield and productivity								
2688	qYLD-3-2(t) (yld3.2)	qYLD-3-2(t) (yld3.2)	yield per plant (QTL)-3-2(t)	yield per plant (QTL)-3-2(t)			3	This QTL controls yield per plant, being located on chromosome 3 flanked by markers RM130 and RM16.	 Character as QTL - Yield and productivity								
2689	qYLD-6-1(t) (yld6.1)	qYLD-6-1(t) (yld6.1)	yield per plant (QTL)-6-1(t)	yield per plant (QTL)-6-1(t)			6	This QTL controls yield per plant, being locted on chromosome 6 closely linked with marker RM276.	 Character as QTL - Yield and productivity								
2690	qYLD-9-1(t) (yld9.1)	qYLD-9-1(t) (yld9.1)	yield per plant (QTL)-9-1(t)	yield per plant (QTL)-9-1(t)			9	This QTL controls yield per plant,being located on chromosome 9 closely linked with marker RM215.	 Character as QTL - Yield and productivity								
2691	qPH-1-2(t) (ph1.1)	qPH-1-2(t) (ph1.1)	plant height (QTL)-1-2(t)	plant height (QTL)-1-2(t)			1	This QTL controls plant height, being located on chromosome 1 closely linked with marker RG811.	 Vegetative organ - Culm								
2692	qPH-1-3(t) (ph1.2)	qPH-1-3(t) (ph1.2)	plant height (QTL)-1-3(t)	plant height (QTL)-1-3(t)			1	This QTL controls plant height, being located on chromosome 1 flanked by markers RZ730 and RZ331.	 Vegetative organ - Culm								
2693	qSH-1-3(t) (sh1.1)	qSH-1-3(t) (sh1.1)	shatterring (QTL)-1-3(t)	shatterring (QTL)-1-3(t)			1	This QTL controls seed shattering, being located on chromosome 1 flanked by markers RM315 and RG331.	 Seed - Physiological traits - Shattering								
2694	qSH-3-2(t) (sh3.1)	qSH-3-2(t) (sh3.1)	shattering (QTL)-3-2(t)	shattering (QTL)-3-2(t)			3	This QTL controls seed shattering, being located on chromosome 3 closely linked with marker RM60.	 Seed - Physiological traits - Shattering								
2695	qSH-4-3(t) (sh4.1)	qSH-4-3(t) (sh4.1)	shattering (QTL)-4-3(t)	shattering (QTL)-4-3(t)			4	This QTL controls seed shattering, being located on chromosome 4 flanked by markers RZ656 and RM185.	 Seed - Physiological traits - Shattering								
2696	qSH-3-3(t) (sh3.2)	qSH-3-3(t) (sh3.2)	shattering (QTL)-3-3(t)	shattering (QTL)-3-3(t)			3	This QTL controls seed shattering, being located on chromosome 3 closely linked with marker RM282.	 Seed - Physiological traits - Shattering								
2697	qSH-7-1(t) (sh7.1)	qSH-7-1(t) (sh7.1)	shattering (QTL)-7-1(t)	shattering (QTL)-7-1(t)			7	This QTL controls seed shattering, being located on chromosome 7 flanked by markers RG30 and RM214.	 Seed - Physiological traits - Shattering								
2698	qSH-8-2(t) (sh8.1)	qSH-8-2(t) (sh8.1)	shattering (QTL)-8-2(t)	shattering (QTL)-8-2(t)			8	This QTL controls seed shattering, being located on chromosome 8 flanked by markers RM44 and RM42.	 Seed - Physiological traits - Shattering								
2699	qGRM-1-1(t) (grm1.1)	qGRM-1-1(t) (grm1.1)	percent germination (QTL)-1-1(t)	percent germination (QTL)-1-1(t)			1	This QTL controls percent germination, being located on chromosome 1 flanked by markers RM5 and RM306.	 Character as QTL - Germination								
2700	qGRM-4-1(t) (grm4.1)	qGRM-4-1(t) (grm4.1)	percent germination (QTL)-4-1(t)	percent germination (QTL)-4-1(t)			4	This QTL controls percent germination, being located on chromosome 4 flanked by markers RM119 and RM303.	 Character as QTL - Germination								
2701	qGRM-6-1(t) (grm6.1)	qGRM-6-1(t) (grm6.1)	percent germination (QTL)-6-1(t)	percent germination (QTL)-6-1(t)			6	This QTL controls percent germination, being located on chromosome 6 flanked by markers RM170 and RM204.	 Character as QTL - Germination								
2702	qAWN-4-1(t) (awn4.1)	qAWN-4-1(t) (awn4.1)	awns (QTL)-4-1(t)	awns (QTL)-4-1(t)			4	This QTL controls awn length (rank), being located on chromosome 4 flanked by markers RM307 and RM185.	 Reproductive organ - Inflorescence								
2703	qAWN-8-1(t) (awn8.1)	qAWN-8-1(t) (awn8.1)	awns (QTL)-8-1(t)	awns (QTL)-8-1(t)			8	This QTL controls awn length (rank), being located on chromosome 8 closely linked with marker RM264.	 Reproductive organ - Inflorescence								
2704	qTT-2-1(t) (tt2.1)	qTT-2-1(t) (tt2.1)	tiller type (QTL)-2-1(t)	tiller type (QTL)-2-1(t)			2	This QTL controls tiller type, being located on chromosome 2 flanked by markers RM318 and RM250.	 Character as QTL - Plant growth activity								
2705	qTT-5-1(t) (tt5.1)	qTT-5-1(t) (tt5.1)	tiller type (QTL)-5-1(t)	tiller type (QTL)-5-1(t)			5	This QTL controls tiller type, being located on chromosome 5 closely linked with marker RM274.	 Character as QTL - Plant growth activity								
2706	qTT-9-1(t) (tt9.1)	qTT-9-1(t) (tt9.1)	tiller type (QTL)-9-1(t)	tiller type (QTL)-9-1(t)			9	This QTL controls tiller type, being located on chromosome 9 flanked by markers RZ422 and RM245.	 Character as QTL - Plant growth activity								
2707	qYLD-9-2(t) (qYLD9-1)	qYLD-9-2(t) (qYLD9-1)	yield per plant (QTL)-9-2(t)	yield per plant (QTL)-9-2(t)			9	This QTL controls grain yield per plant, being located on chromosome 9 flanked by markers RZ12 and RM201.	 Character as QTL - Yield and productivity								
2708	qYLD-4-1(t) (qYLD4-1)	qYLD-4-1(t) (qYLD4-1)	yield per plant (QTL)-4-1(t)	yield per plant (QTL)-4-1(t)			4	This QTL controls grain yield per plant, being located on chromosome 4 flanked by markers RG91 and RG449.	 Character as QTL - Yield and productivity								
2709	qYLD-10-1(t) (qYLD10-1)	qYLD-10-1(t) (qYLD10-1)	yield per plant (QTL)-10-1(t)	yield per plant (QTL)-10-1(t)			10	This QTL controls grain yield pr plant, being located on chromosome 10 flanked by markers RG257 and RG241.	 Character as QTL - Yield and productivity								
2710	qBMS-1-1(t) (qBMS1-1)	qBMS-1-1(t) (qBMS1-1)	biomass per plant (QTL)-1-1(t)	biomass per plant (QTL)-1-1(t)			1	This QTL controls biomass per plant, being located on chromosome 1 flanked be markers RG810 and RZ801.	 Character as QTL - Yield and productivity								
2711	qBMS-1-2(t) (qBMS1-2)	qBMS-1-2(t) (qBMS1-2)	biomass per plant (QTL)-1-2(t)	biomass per plant (QTL)-1-2(t)			1	This QTL controls biomass per plant, being located on chromosome 1 flanked by markers RZ801 and RG331.	 Character as QTL - Yield and productivity								
2712	qBMS-3-1(t) (qBMS3-1)	qBMS-3-1(t) (qBMS3-1)	biomass per plant (QTL)-3-1(t)	biomass per plant (QTL)-3-1(t)			3	This QTL controls biomass per plant, being located on chromosome 3 flanked by markers RZ284 and pRD10A.	 Character as QTL - Yield and productivity								
2713	qBMS-4-1(t) (qBMS4-1)	qBMS-4-1(t) (qBMS4-1)	biomass per plant (QTL)-4-1(t)	biomass per plant (QTL)-4-1(t)			4	This QTL controls biomass per plant, being located on chromosome 4 flanked by markers RG190 and RG908.	 Character as QTL - Yield and productivity								
2714	qBMS-7-1(t) (qBMS7-1)	qBMS-7-1(t) (qBMS7-1)	biomass per plant (QTL)-7-1(t)	biomass per plant (QTL)-7-1(t)			7	This QTL controls biomass per plant, being located on chromosome 7 flanked by markers RZ488 and RG477.	 Character as QTL - Yield and productivity								
2715	qBMS-7-2(t) (qBMS7-2)	qBMS-7-2(t) (qBMS7-2)	biomass per plant (QTL)-7-2(t)	biomass per plant (QTL)-7-2(t)			7	This QTL controls biomass per plant, being located on chromosome 7 flanked by markers RG477 and PGMS0.7.	 Character as QTL - Yield and productivity								
2716	qFRP-4-1(t) (qFRP4-1)	qFRP-4-1(t) (qFRP4-1)	fertility percentage (QTL)-4-1(t)	fertility percentage (QTL)-4-1(t)			4	This QTL controls fertility percentage, being located on chromosome 4 flanked by markers RG449 and RG788.	 Character as QTL - Seed sterility								
2717	qHDD-1-1(t)(qHDD1-1)	qHDD-1-1(t)(qHDD1-1)	heading date (QTL)-1-1(t)	heading date (QTL)-1-1(t)			1	This QTL controls heading date, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Reproductive organ - Heading date								
2718	qHDD-3-1(t)(qHDD3-1)	qHDD-3-1(t)(qHDD3-1)	heading date (QTL)-3-1(t)	heading date (QTL)-3-1(t)			3	This QTL controls heading date, being located on chromosome 3 flanked by markers RG104 and RG348.	 Reproductive organ - Heading date								
2719	qHDD-3-2(t)(qHDD3-2)	qHDD-3-2(t)(qHDD3-2)	heading date (QTL)-3-2(t)	heading date (QTL)-3-2(t)			3	This QTL controls heading date, being located on chromosome 3 flanked by markers RG348 and RM231.	 Reproductive organ - Heading date								
2720	qHDD-4-1(t)(qHDD4-1)	qHDD-4-1(t)(qHDD4-1)	heading date (QTL)-4-1(t)	heading date (QTL)-4-1(t)			4	This QTL controls heading date, being located on chromosome 4 flanked by markers RG190 and RG908.	 Reproductive organ - Heading date								
2721	qHDD-7-1(t)(qHDD7-1)	qHDD-7-1(t)(qHDD7-1)	heading date (QTL)-7-1(t)	heading date (QTL)-7-1(t)			7	This QTl controls heading date, being located on chromosome 7 flanked by markers RG477 and PGMS0.7.	 Reproductive organ - Heading date								
2722	qHDD-8-1(t)(qHDD8-1)	qHDD-8-1(t)(qHDD8-1)	heading date (QTL)-8-1(t)	heading date (QTL)-8-1(t)			8	This QTL controls heading date, being located on chromosome 8 flanked by markers AG8-Aro and A10K25.	 Reproductive organ - Heading date								
2723	qHDD-9-1(t)(qHDD9-1)	qHDD-9-1(t)(qHDD9-1)	heading date (QTL)-9-1(t)	heading date (QTL)-9-1(t)			9	This QTL controls heading date, being located on chromosome 9 flanked by markers RM257 and RZ228.	 Reproductive organ - Heading date								
2724	qHID-1-1(t) (qHID1-1)	qHID-1-1(t) (qHID1-1)	harvest index (QTL)-1-1(t)	harvest index (QTL)-1-1(t)			1	This QTL controls harvest index, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Character as QTL - Yield and productivity								
2725	qHID-1-2(t) (qHID1-2)	qHID-1-2(t) (qHID1-2)	harvest index (QTL)-1-2(t)	harvest index (QTL)-1-2(t)			1	This QTL controls harvest index, being located on chromosome 1 flanked by markers RZ801 and RG331.	 Character as QTL - Yield and productivity								
2726	qHID-3-1(t) (qHID3-1)	qHID-3-1(t) (qHID3-1)	harvest index (QTL)-3-1(t)	harvest index (QTL)-3-1(t)			3	This QTL controls harvest index, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Character as QTL - Yield and productivity								
2727	qHID-3-2(t) (qHID3-2)	qHID-3-2(t) (qHID3-2)	harvest index (QTL)-3-2(t)	harvest index (QTL)-3-2(t)			3	This QTL controls harvest index, being located on chromosome 3 flanked by markers RZ284 and pRD10A.	 Character as QTL - Yield and productivity								
2728	qHID-4-1(t) (qHID4-1)	qHID-4-1(t) (qHID4-1)	harvest index (QTL)-4-1(t)	harvest index (QTL)-4-1(t)			4	This QTL controls harvest index, being located on chromosome 4 flanked by markers RG190 and RG908.	 Character as QTL - Yield and productivity								
2729	qHID-4-2(t) (qHID4-2)	qHID-4-2(t) (qHID4-2)	harvest index (QTL)-4-2(t)	harvest index (QTL)-4-2(t)			4	This QTL controls harvest index, being located on chromosome 4 flanked by markers RG908 and RG91.	 Character as QTL - Yield and productivity								
2730	qHID-4-3(t) (qHID4-3)	qHID-4-3(t) (qHID4-3)	harvest index (QTL)-4-3(t)	harvest index (QTL)-4-3(t)			4	This QTL controls harvest index, being located on chromosome 4 flanked by markers RG91 and RG449.	 Character as QTL - Yield and productivity								
2731	qHID-7-1(t) (qHID7-1)	qHID-7-1(t) (qHID7-1)	harvest index (QTL)-7-1(t)	harvest index (QTL)-7-1(t)			7	This QTL controls harvest index, being located on chromosome 7 flanked by markers RG769 and RG511.	 Character as QTL - Yield and productivity								
2732	qHID-7-2(t) (qHID7-2)	qHID-7-2(t) (qHID7-2)	harvest index (QTL)-7-2(t)	harvest index (QTL)-7-2(t)			7	This QTL controls harvest index, being located on chromosome 7 flanked by markers PGMS0.7 and RM214.	 Character as QTL - Yield and productivity								
2733	qHID-8-1(t) (qHID8-1)	qHID-8-1(t) (qHID8-1)	harvest index (QTL)-8-1(t)	harvest index (QTL)-8-1(t)			8	This QTL controls harvest index, being located on chromosome 8 flanked by markers RG978 and RZ617.	 Character as QTL - Yield and productivity								
2734	qHID-8-2(t) (qHID8-2)	qHID-8-2(t) (qHID8-2)	harvest index (QTL)-8-2(t)	harvest index (QTL)-8-2(t)			8	This QTL controls harvest index, being located on chromosome 8 flanked by markers RZ617 and AG8-Aro.	 Character as QTL - Yield and productivity								
2735	qNOP-1-1(t) (qNOP1-1)	qNOP-1-1(t) (qNOP1-1)	number of panicles per plant (QTL)-1-1(t)	number of panicles per plant (QTL)-1-1(t)			1	This QTL controls number of panicles per plant, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Character as QTL - Yield and productivity								
2736	qNOP-3-1(t) (qNOP3-1)	qNOP-3-1(t) (qNOP3-1)	number of panicles per plant (QTL)-3-1(t)	number of panicles per plant (QTL)-3-1(t)			3	This QTL controls number of panicles per plant, being located on chromosome 3 flanked by markers CDO87 and RG910.	 Character as QTL - Yield and productivity								
2737	qNOP-4-1(t) (qNOP4-1)	qNOP-4-1(t) (qNOP4-1)	number of panicles per plant (QTL)-4-1(t)	number of panicles per plant (QTL)-4-1(t)			4	This QTL controls number of panicles per plant, being located on chromosome 4 flanked by markers RZ675 and RM241.	 Character as QTL - Yield and productivity								
2738	qNOP-4-2(t) (qNOP4-2)	qNOP-4-2(t) (qNOP4-2)	number of panicles per plant (QTL)-4-2(t)	number of panicles per plant (QTL)-4-2(t)			4	This QTL controls number of panicles per plant, being located on chromosome 4 flanked by markers RG163 and RG214.	 Character as QTL - Yield and productivity								
2739	qNOP-12-1(t) (qNOP12-1)	qNOP-12-1(t) (qNOP12-1)	number of panicles per plant (QTL)-12-1(t)	number of panicles per plant (QTL)-12-1(t)			12	This QTL controls number of panicles per plant, being located on chromosome 12 flanked by RG901 and RG958.	 Character as QTL - Yield and productivity								
2740	qNOP-12-2(t) (qNOP12-2)	qNOP-12-2(t) (qNOP12-2)	number of panicles per plant (QTL)-12-2(t)	number of panicles per plant (QTL)-12-2(t)			12	This QTL controls number of panicles per plant, being located on chromosome 12 flanked by markers RM235 and RG181.	 Character as QTL - Yield and productivity								
2741	qNOS-1-1(t)(qNOS1-1)	qNOS-1-1(t)(qNOS1-1)	number of spikelets per panicle (QTL)-1-1(t)	number of spikelets per panicle (QTL)-1-1(t)			1	This QTL controls number of spikelets per panicle, being located on chromosome 1 flanked by markers RM84 and RM220.	 Reproductive organ - Inflorescence								
2742	qNOS-4-1(t)(qNOS4-1)	qNOS-4-1(t)(qNOS4-1)	number of spikelets per panicle (QTL)-4-1(t)	number of spikelets per panicle (QTL)-4-1(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG449 and RG788.	 Reproductive organ - Inflorescence								
2743	qNOS-4-2(t)(qNOS4-2)	qNOS-4-2(t)(qNOS4-2)	number of spikelets per panicle (QTL)-4-2(t)	number of spikelets per panicle (QTL)-4-2(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG788 and RZ565.	 Reproductive organ - Inflorescence								
2744	qNOS-4-3(t)(qNOS4-3)	qNOS-4-3(t)(qNOS4-3)	number of spikelets per panicle (QTL)-4-3(t)	number of spikelets per panicle (QTL)-4-3(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG163 and RG214.	 Reproductive organ - Inflorescence								
2745	qNOS-4-4(t)(qNOS4-4)	qNOS-4-4(t)(qNOS4-4)	number of spikelets per panicle (QTL)-4-4(t)	number of spikelets per panicle (QTL)-4-4(t)			4	This QTL controls number of spikelets per panicle, being located on chromosome 4 flanked by markers RG214 and RZ590.	 Reproductive organ - Inflorescence								
2746	qNOS-7-1(t)(qNOS7-1)	qNOS-7-1(t)(qNOS7-1)	number of spikelets per panicle (QTL)-7-1(t)	number of spikelets per panicle (QTL)-7-1(t)			7	This QTL controls number of spikelets per panicle, being located on chromosome 7 flanked by markers RM70 and Est-9.	 Reproductive organ - Inflorescence								
2747	qPEN-1-1(t)(qPEN1-1)	qPEN-1-1(t)(qPEN1-1)	panicle exertion (QTL)-1-1(t)	panicle exertion (QTL)-1-1(t)			1	This QTL controls panicle exertion, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Reproductive organ - Inflorescence								
2748	qPEN-4-1(t)(qPEN4-1)	qPEN-4-1(t)(qPEN4-1)	panicle exertion (QTL)-4-1(t)	panicle exertion (QTL)-4-1(t)			4	This QTL controls panicle exertion, being located on chromosome 4 flanked by markers RG190 and RG908.	 Reproductive organ - Inflorescence								
2749	qPEN-8-1(t)(qPEN8-1)	qPEN-8-1(t)(qPEN8-1)	panicle exertion (QTL)-8-1(t)	panicle exertion (QTL)-8-1(t)			8	This QTL controls panicle exertion, being located on chromosome 8 flanked by markers CDO99 and Amp-2.	 Reproductive organ - Inflorescence								
2750	qPH-1-4(t) (qPHT1-1)	qPH-1-4(t) (qPHT1-1)	plant height (QTL)-1-4(t)	plant height (QTL)-1-4(t)			1	This QTL controls plant height, being located on chromosome 1 flanked by markers RZ730 and RG810. Same to sd-1?	 Character as QTL - Plant growth activity								
2751	qPH-3-5(t) (qPHT3-1)	qPH-3-5(t) (qPHT3-1)	plant height (QTL)-3-5(t)	plant height (QTL)-3-5(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Character as QTL - Plant growth activity								
2752	qPH-3-6(t) (qPHT3-2)	qPH-3-6(t) (qPHT3-2)	plant height (QTL)-3-6(t)	plant height (QTL)-3-6(t)			3	This QTL controls plant height, being located on chromosome 3 flanked by markers RZ284 and pRD10A.	 Character as QTL - Plant growth activity								
2753	qPH-7-2(t) (qPHT7-1)	qPH-7-2(t) (qPHT7-1)	plant height (QTL)-7-2(t)	plant height (QTL)-7-2(t)			7	This QTl controls plant height, being located on chromosome 7 flanked by markers RG769 and RG511.	 Character as QTL - Plant growth activity								
2754	qPL-1-2(t) (qPLT1-1)	qPL-1-2(t) (qPLT1-1)	panicle length (QTL)-1-2(t)	panicle length (QTL)-1-2(t)			1	This QTL controls panicle length, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Reproductive organ - Inflorescence								
2755	qPL-3-1(t) (qPLT3-1)	qPL-3-1(t) (qPLT3-1)	panicle length (QTL)-3-1(t)	panicle length (QTL)-3-1(t)			3	This QTL controls panicle length, being located on chromosome 3 flanked by markers RM218 and RM232.	 Reproductive organ - Inflorescence								
2756	qPL-3-2(t) (qPLT3-2)	qPL-3-2(t) (qPLT3-2)	panicle length (QTL)-3-2(t)	panicle length (QTL)-3-2(t)			3	This QTL controls panicle length, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Reproductive organ - Inflorescence								
2757	qPL-3-3(t) (qPLT3-3)	qPL-3-3(t) (qPLT3-3)	panicle length (QTL)-3-3(t)	panicle length (QTL)-3-3(t)			3	This QTL controls panicle length, being located on chromosome 3 flanked by markers RG910 and RG418A.	 Reproductive organ - Inflorescence								
2758	qPL-4-2(t) (qPLT4-1)	qPL-4-2(t) (qPLT4-1)	panicle length (QTL)-4-2(t)	panicle length (QTL)-4-2(t)			4	This QTL controls panicle length, being located on chromosome 4 flanked by markers RG163 and RG214.	 Reproductive organ - Inflorescence								
2759	qPL-6-1(t) (qPLT6-1)	qPL-6-1(t) (qPLT6-1)	panicle length (QTL)-6-1(t)	panicle length (QTL)-6-1(t)			6	This QTL controls panicle length, being located on chromosome 6 flanked by markers RG433 and Cat-1.	 Reproductive organ - Inflorescence								
2760	qPL-7-1(t) (qPLT7-1)	qPL-7-1(t) (qPLT7-1)	panicle length (QTL)-7-1(t)	panicle length (QTL)-7-1(t)			7	This QTL controls panicle length, being located on chromosome 7 flanked by markers RG769 and RG511.	 Reproductive organ - Inflorescence								
2761	qPL-10-3(t) (qPLT10-1)	qPL-10-3(t) (qPLT10-1)	panicle length (QTL)-10-3(t)	panicle length (QTL)-10-3(t)			10	This QTL controls panicle length, being located on chromosome 10 flanked by markers RG257 and RG241.	 Reproductive organ - Inflorescence								
2762	qTGWT-1-4(t) (qTGW1-1)	qTGWT-1-4(t) (qTGW1-1)	1000 grain weight (QTL)-1-4(t)	1000 grain weight (QTL)-1-4(t)			1	This QTL controls 1000 grain weight, being located on chromosome 1 flanked by markers RG690 and RM212.	 Character as QTL - Yield and productivity								
2763	qTGWT-1-5(t) (qTGW1-2)	qTGWT-1-5(t) (qTGW1-2)	1000 grain weight (QTL)-1-5(t)	1000 grain weight (QTL)-1-5(t)			1	This QTL controls 1000 grain weight, being located on chromosome 1 flanked by markers RZ730 and RG810.	 Character as QTL - Yield and productivity								
2764	qTGWT-1-6(t) (qTGW1-3)	qTGWT-1-6(t) (qTGW1-3)	1000 grain weight (QTL)-1-6(t)	1000 grain weight (QTL)-1-6(t)			1	This QTL controls 1000 grain weight, being located on chromosome 1 flanked by markers RZ801 and RG331.	 Character as QTL - Yield and productivity								
2765	qTGWT-3-3(t) (qTGW3-1)	qTGWT-3-3(t) (qTGW3-1)	1000 grain weight (QTL)-3-3(t)	1000 grain weight (QTL)-3-3(t)			3	This QTL controls 1000 grain weight, being located on chromosome 3 flanked by markers RZ574 and RZ284.	 Character as QTL - Yield and productivity								
2766	qTGWT-3-4(t) (qTGW3-2)	qTGWT-3-4(t) (qTGW3-2)	1000 grain weight (QTL)-3-4(t)	1000 grain weight (QTL)-3-4(t)			3	This QTL controls 1000 grain weight, being located on chromosome 3 flanked by markers RM55 and RM49.	 Character as QTL - Yield and productivity								
2767	qTGWT-3-5(t) (qTGW3-3)	qTGWT-3-5(t) (qTGW3-3)	1000 grain weight (QTL)-3-5(t)	1000 grain weight (QTL)-3-5(t)			3	This QTL controls 1000 grain weight, being located on chromosome 3 flanked by markers RM49 and CDO337.	 Character as QTL - Yield and productivity								
2768	qTGWT-6-2(t) (qTGW6-1)	qTGWT-6-2(t) (qTGW6-1)	1000 grain weight (QTL)-6-2(t)	1000 grain weight (QTL)-6-2(t)			6	This QTL controls 1000 grain weight, being located on chromosome 6 flanked by markers RG433 and Cat-1.	 Character as QTL - Yield and productivity								
2769	qTGWT-10-2(t) (qTGW10-1)	qTGWT-10-2(t) (qTGW10-1)	1000 grain weight (QTL)-10-2(t)	1000 grain weight (QTL)-10-2(t)			10	This QTL controls 1000 grain weight, being located on chromosome 10 flanked by markers RM258 and G2155.	 Character as QTL - Yield and productivity								
2770	qTGWT-10-3(t) (qTGW10-2)	qTGWT-10-3(t) (qTGW10-2)	1000 grain weight (QTL)-10-3(t)	1000 grain weight (QTL)-10-3(t)			10	This QTL controls 1000 grain weight, being located on chromosome 10 flanked by markers G2155 and RG134.	 Character as QTL - Yield and productivity								
2771	qTGWT-10-4(t) (qTGW10-3)	qTGWT-10-4(t) (qTGW10-3)	1000 grain weight (QTL)-10-4(t)	1000 grain weight (QTL)-10-4(t)			10	This QTL controls 1000 grain weight, being located on chromosome 10 flanked by markers RG134 and RZ500.	 Character as QTL - Yield and productivity								
2772	HSA-1_OG	Hsa-1_og, Hsa-1Og, Hsa-1(Og)	CYST NEMATODE (HETERODERA SACCHARI) RESISTANCE	cyst nematode (Heterodera sacchari) resistance			11	Resistant to nematode (Heterodera sacchari).It is located on chromosome 11 flanked by markers RM206 and RM254. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061374				TO:0000384 - nematode damage resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
2773	TMS5	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30	THERMOSENSITIVE MALE STERILITY 5	thermosensitive male sterility5, NAC domain-containing protein 18, NAC domain-containing protein 023, NAC domain-containing protein 23, endosperm-specific gene 30	NAC DOMAIN-CONTAINING PROTEIN 23	osnac23, osnac23-1, osnac23-2	2	Thermo-sensitive genic male-sterility gene, being located on chromosome 2 flanked by STS marker C365-1 and CAPs marker G227-1. ONAC023, a member of the NAC (NAM-ATAFCUC-related) gene family, was identified as the candidate of the tms5 gene (Yang et al. 2007). GO:0090549: response to carbon starvation. GO:0052575: carbohydrate localization.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Coloration - Chlorophyll,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Reproductive organ - Heading date,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Other	Os02g0214500	LOC_Os02g12310.1				GO:0003677 - DNA binding, GO:0009266 - response to temperature stimulus, GO:0033500 - carbohydrate homeostasis, GO:0008643 - carbohydrate transport, GO:0009749 - response to glucose stimulus, GO:0009744 - response to sucrose stimulus, GO:0048316 - seed development, GO:0007623 - circadian rhythm, GO:0009758 - carbohydrate utilization, GO:0010233 - phloem transport, GO:0007275 - multicellular organismal development, GO:0005991 - trehalose metabolic process, GO:0005992 - trehalose biosynthetic process, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0080094 - response to trehalose-6-phosphate stimulus, GO:0005737 - cytoplasm, GO:0048573 - photoperiodism, flowering	TO:0001015 - photosynthetic rate, TO:0000326 - leaf color, TO:0000258 - leaf thickness, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000449 - grain yield per plant, TO:0000067 - genic male sterility-thermo sensitive, TO:0002616 - flowering time, TO:0006032 - panicle size, TO:0000259 - heat tolerance, TO:0000266 - chalky endosperm, TO:0000598 - protein content, TO:0000396 - grain yield, TO:0000696 - starch content, TO:0000162 - seed quality, TO:0000276 - drought tolerance, TO:0000333 - sugar content, TO:0000371 - yield trait, TO:0000382 - 1000-seed weight, TO:0000495 - chlorophyll content, TO:0000181 - seed weight, TO:0006003 - oligosaccharide content, TO:0000653 - seed development trait, TO:0000001 - carbon sensitivity, TO:0000357 - growth and development trait, TO:0000291 - carbohydrate content, TO:0000328 - sucrose content, TO:0000397 - grain size, TO:0000346 - tiller number, TO:0000137 - days to heading, TO:0000152 - panicle number, TO:0000391 - seed size	PO:0009089 - endosperm , PO:0005360 - aleurone layer , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009009 - plant embryo 
2774	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33	PYRICULARIA ORYZAE RESISTANCE 33	Pyricularia oryzae resistance-33(t), Magnaporthe grisea resistance 33, Blast resistance 33			8	Pi33 was located on chromosome 8 in a 1.6cM interval between markers RM72 and Y2643L (Bohnert et al. 2004). Original line is IR64, Bala (Indica). It was shown that, in the elite rice variety IR64, the resistance conferring allele of the rice blast resistance gene Pi33 was introgressed from the wild rice Oryza rufipogon (accession IRGC101508). The Pi33 locus was previously mapped to a 240 kb region between markers RMSPi33-53 and RM3507. In Nipponbare, nine candidate genes (three NBS-LRR and six LRR-kinase) were identified in this genomic region: (LOC_Os08g10250, LOC_Os08g10260, LOC_Os08g10290, LOC_Os08g10300, LOC_Os08g10310, LOC_Os08g10320, LOC_Os08g10330, LOC_Os08g10430 and LOC_Os08g10440) (Ballini et al. 2007). The Pi33 gene is located at a position of 3,306-3,309 Mbp inside the LOC_Os08g32600 (Os08g0421800) locus. (Utami et al. 2011).	 Tolerance and resistance - Disease resistance					45.4	GO:0009620 - response to fungus		
2775	qHD8(t)	Hd8(t)	heading date (QTL)-8(t)	heading date (QTL)-8(t)			3	Hd8 is located on chromosome 3 being tightly linked with seed dormancy gene Sdr1.	 Reproductive organ - Heading date			GR:0061442			GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading	
2776	qDTH-2-4(t)(dth2.1)	qDTH-2-4(t)(dth2.1)	days to heading (QTL)-2-4(t)	days to heading (QTL)-2-4(t)			2	This QTL controls days to heading, being located on chromosome 2 closely associated by a marker RM211.	 Reproductive organ - Heading date								
2777	qDTH-2-5(t)(dth2.2)	qDTH-2-5(t)(dth2.2)	days to heading (QTL)-2-5(t)	days to heading (QTL)-2-5(t)			2	This QTL controls days to heading, being located on chromosome 2 closely associated by marker RM266.	 Reproductive organ - Heading date								
2778	qDTH-7-2	qDTH-7-2, qDTH-7-2(t)(dth7.1)	days to heading (QTL)-7-2	days to heading (QTL)-7-2			7	This QTL controls days to heading, being located on chromosome 2 closely associated by marker RM125.	 Reproductive organ - Heading date								
2779	qDTH-7-3(t)(dth7.2)	qDTH-7-3(t)(dth7.2)	days to heading (QTL)-7-3(t)	days to heading (QTL)-7-3(t)			7	This QTL controls days to heading, being located on chromosome 7 closely associated by marker RM234.	 Reproductive organ - Heading date								
2780	qDTH-11-3(t)(dth11.1)	qDTH-11-3(t)(dth11.1)	days to heading (QTL)-11-3(t)	days to heading (QTL)-11-3(t)			11	This QTL controls days to heading, being located on chromosome 11 closely associated by marker RM202.	 Reproductive organ - Heading date								
2781	qDTH-12-2(t)(dth12.1)	qDTH-12-2(t)(dth12.1)	days to heading (QTL)-12-2(t)	days to heading (QTL)-12-2(t)			12	This QTL controls days to heading, being located on chromosome 12 closely associated by RM270.	 Reproductive organ - Heading date								
2782	qDTM-4-1(t) (dtm4.1)	qDTM-4-1(t) (dtm4.1)	days to maturity (QTL)-4-1(t)	days to maturity (QTL)-4-1(t)			4	This QTL controls days to maturity, being located on chromosome 4 closely associated by marker RM627.	 Character as QTL - Yield and productivity								
2783	qDTM-4-2(t) (dtm4.2)	qDTM-4-2(t) (dtm4.2)	days to maturity (QTL)-4-2(t)	days to maturity (QTL)-4-2(t)			4	This QTL controls days to maturity, being located on chromosome 4 closely associated by marker RG788.	 Character as QTL - Yield and productivity								
2784	qDTM-7-1(t) (dtm7.1)	qDTM-7-1(t) (dtm7.1)	days to maturity (QTL)-7-1(t)	days to maturity (QTL)-7-1(t)			7	This QTL controls days to maturity, being located on chromosome 7 closely associated by marker RM234.	 Character as QTL - Yield and productivity								
2785	qDTM-8-1(t) (dtm8.1)	qDTM-8-1(t) (dtm8.1)	days to maturity (QTL)-8-1(t)	days to maturity (QTL)-8-1(t)			8	This QTL controls days to maturity, being located on chromosome 8 closely associated by marker RG20.	 Character as QTL - Yield and productivity								
2786	qPH-4-3(t) (ph4.1)	qPH-4-3(t) (ph4.1)	plant height (QTL)-4-3(t)	plant height (QTL)-4-3(t)			4	This QTL controls plant height, being located on chromosome 4 flanked by markers RM307 and RM185.	 Vegetative organ - Culm								
2787	qPH-5-3(t) (ph5.1)	qPH-5-3(t) (ph5.1)	plant height (QTL)-5-3(t)	plant height (QTL)-5-3(t)			5	This QTL controls plant height, being located on chromosome 5 flanked by markers RM178 and RM334.	 Vegetative organ - Culm								
2788	qPH-8-2(t) (ph8.1)	qPH-8-2(t) (ph8.1)	plant height (QTL)-8-2(t)	plant height (QTL)-8-2(t)			8	This QTL controls plant height, being located on chromosome 8 flanked by markers RM210 and RM308.	 Vegetative organ - Culm								
2789	qPH-12-1(t) (ph12.1)	qPH-12-1(t) (ph12.1)	plant height (QTL)-12-1(t)	plant height (QTL)-12-1(t)			12	This QTL controls plant height, being located on chromosome 12 closely associated by marker RG901.	 Vegetative organ - Culm								
2790	qPH-1-5(t) (ph1.1)	qPH-1-5(t) (ph1.1)	plant height (QTL)-1-5(t)	plant height (QTL)-1-5(t)			1	This QTL controls plant height, being located on chromosome 1 closely associated by marker RM315.	 Vegetative organ - Culm								
2791	qPH-4-4(t) (ph4.1)	qPH-4-4(t) (ph4.1)	plant height (QTL)-4-4(t)	plant height (QTL)-4-4(t)			4	This QTL controls plant height, being located on chromosome 4 closely associated by marker RM518 or RM627.	 Vegetative organ - Culm								
2792	qPH-6-2(t) (ph6.1)	qPH-6-2(t) (ph6.1)	plant height (QTL)-6-2(t)	plant height (QTL)-6-2(t)			6	This QTL controls plant height, being located on chromosome 6 closely associated by marker RM540.	 Vegetative organ - Culm								
2793	qPH-10-1(t) (ph10.1)	qPH-10-1(t) (ph10.1)	plant height (QTL)-10-1(t)	plant height (QTL)-10-1(t)			10	This QTL controls plant height, being located on chromosome 10 closely associated by marker RM474.	 Vegetative organ - Culm								
2794	qPH-11-2(t) (ph11.1)	qPH-11-2(t) (ph11.1)	plant height (QTL)-11-2(t)	plant height (QTL)-11-2(t)			11	This QTL controls plant height, being located on chromosome 11 closely associated by RM286.	 Vegetative organ - Culm								
2795	qPL-1-3(t) (pl1.1)	qPL-1-3(t) (pl1.1)	panicle length (QTL)-1-3(t)	panicle length (QTL)-1-3(t)			1	This QTL controls panicle length, being located on chromosome 1 alosely associated by marker RM315 or RM265.	 Reproductive organ - Inflorescence								
2796	qPL-3-4(t) (pl3.1)	qPL-3-4(t) (pl3.1)	panicle length (QTL)-3-4(t)	panicle length (QTL)-3-4(t)			3	This QTL controls panicle length, being located on chromosome 3 closely associated by marker RZ672.	 Reproductive organ - Inflorescence								
2797	qPL-9-2(t) (pl9.1)	qPL-9-2(t) (pl9.1)	panicle length (QTL)-9-2(t)	panicle length (QTL)-9-2(t)			9	This QTL controls panicle length, being located on chromosome 9 closely associated by marker RM215.	 Reproductive organ - Inflorescence								
2798	qPL-10-4(t) (pl10.1)	qPL-10-4(t) (pl10.1)	panicle length (QTL)-10-4(t)	panicle length (QTL)-10-4(t)			10	This QTL controls panicle length, being located on chromosome 10 closely associated by marker RM474.	 Reproductive organ - Inflorescence								
2799	qPL-10-5(t) (pl10.2)	qPL-10-5(t) (pl10.2)	panicle length (QTL)-10-5(t)	panicle length (QTL)-10-5(t)			10	This QTL controls panicle length, being located on chromosome 10 closely associated by marker RM496.	 Reproductive organ - Inflorescence								
2800	qPPL-1-1(t) (ppl1.1)	qPPL-1-1(t) (ppl1.1)	panicles per plant (QTL)-1-1(t)	panicles per plant (QTL)-1-1(t)			1	This QTL cntrols panicle number per plant, being located on chromosome 1 closely associated by marker RM431 or RM315.	 Character as QTL - Yield and productivity								
2801	qPPL-1-2(t) (ppl1.2)	qPPL-1-2(t) (ppl1.2)	panicles per plant (QTL)-1-2(t)	panicles per plant (QTL)-1-2(t)			1	This QTL controls panicle number per plant, being located on chromosome 1 closely associated by marker RG331.	 Character as QTL - Yield and productivity								
2802	qPPL-2-1(t) (ppl2.1)	qPPL-2-1(t) (ppl2.1)	panicles per plant (QTL)-2-1(t)	panicles per plant (QTL)-2-1(t)			2	This QTL controls panicle number per plant, being located on chromosome 2 closely associated by marker RM424.	 Character as QTL - Yield and productivity								
2803	qPPL-11-1(t) (ppl11.1)	qPPL-11-1(t) (ppl11.1)	panicles per plant (QTL)-11-1(t)	panicles per plant (QTL)-11-1(t)			11	This QTL controls panicle number per plant, being located on chromosome 11 closely associated by marker RM202.	 Character as QTL - Yield and productivity								
2804	qPPL-11-2(t) (ppl11.2)	qPPL-11-2(t) (ppl11.2)	panicles per plant (QTL)-12-2(t)	panicles per plant (QTL)-12-2(t)			11	This QTL controls panicle number per plant, being located on chromosome 11 closely associated by marker RM254.	 Character as QTL - Yield and productivity								
2805	qGPP-2-2(t) (gpp2.1)	qGPP-2-2(t) (gpp2.1)	grains per panicle (QTL)-2-2(t)	grains per panicle (QTL)-2-2(t)			2	This QTL controls grain number per panicle, being located on chromosome 2 closely associated by marker RM202.	 Character as QTL - Yield and productivity								
2806	qGPP-3-2(t) (gpp3.1)	qGPP-3-2(t) (gpp3.1)	grains per panicle (QTL)-3-2(t)	grains per panicle (QTL)-3-2(t)			3	This QTL controls grain number per panicle, being located on chromosome 3 closely associated by marker RM282.	 Character as QTL - Yield and productivity								
2807	qSPP-3-2(t)(spp3.1)	qSPP-3-2(t)(spp3.1)	spikelets per panicle (QTL)-3-2(t)	spikelets per panicle (QTL)-3-2(t)			3	This QTL controls spikelet number per panicle, being located on chromosome 3 closely associated by marker RM282.	 Reproductive organ - Inflorescence								
2808	qPSS-1-2(t) (pss1.1)	qPSS-1-2(t) (pss1.1)	percent seed set (QTL)-1-2(t)	percent seed set (QTL)-1-2(t)			1	This QTL controls percent seed set, being located on chromosome 1 closely associated by marker RM212.	 Character as QTL - Seed sterility								
2809	qPSS-2-1(t) (pss2.1)	qPSS-2-1(t) (pss2.1)	percent seed set (QTL)-2-1(t)	percent seed set (QTL)-2-1(t)			2	This QTL controls percent seed set, being located on chromosome 2 closely associated by marker RM266.	 Character as QTL - Seed sterility								
2810	qPSS-11-1(t) (pss11.1)	qPSS-11-1(t) (pss11.1)	percent seed set (QTL)-11-1(t)	percent seed set (QTL)-11-1(t)			11	This QTL controls percent seed set, being located on chromosome 11 closely associated by marker RM286.	 Character as QTL - Seed sterility								
2811	qGPL-1-1(t) (gpl1.1)	qGPL-1-1(t) (gpl1.1)	grains per plant (QTL)-1-1(t)	grains per plant (QTL)-1-1(t)			1	This QTL controls grain number per plant, being located on chromosome 1 closely associated by marker RM220.	 Character as QTL - Yield and productivity								
2812	qGPL-2-1(t) (gpl2.1)	qGPL-2-1(t) (gpl2.1)	grains per plant (QTL)-2-1(t)	grains per plant (QTL)-2-1(t)			2	This QTL controls grain number per plant, being located on chromosome 2 closely associated by marker RM6.	 Character as QTL - Yield and productivity								
2813	qGPL-12-1(t) (gpl12.1)	qGPL-12-1(t) (gpl12.1)	grains per plant (QTL)-12-1(t)	grains per plant (QTL)-12-1(t)			12	This QTL controls grain number per plant, being located on chromosome 12 closely associated by marker RG901.	 Character as QTL - Yield and productivity								
2814	qGW-1-2(t) (gw1.1)	qGW-1-2(t) (gw1.1)	grain weight (QTL)-1-2(t)	grain weight (QTL)-1-2(t)			1	This QTL controls 1000-grain weight, being located on chromosome 1 closely associated by marker RM431 or RM104.	 Character as QTL - Yield and productivity								
2815	qGW-2-2(t) (gw2.1)	qGW-2-2(t) (gw2.1)	grain weight (QTL)-2-2(t)	grain weight (QTL)-2-2(t)			2	This QTL controls 1000-grain weight, being located on chromosome 2 closely associated by marker RM266.	 Character as QTL - Yield and productivity								
2816	qGW-3-4(t) (gw3.1)	qGW-3-4(t) (gw3.1)	grain weight (QTL)-3-4(t)	grain weight (QTL)-3-4(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 closely associated by marker RZ448.	 Character as QTL - Yield and productivity								
2817	qGW-3-5(t) (gw3.2)	qGW-3-5(t) (gw3.2)	grain weight (QTL)-3-5(t)	grain weight (QTL)-3-5(t)			3	This QTL controls 1000-grain weight, being located on chromosome 3 closely associated by marker RM571.	 Character as QTL - Yield and productivity								
2818	qGW-7-2(t) (gw7.1)	qGW-7-2(t) (gw7.1)	grain weight (QTL)-7-2(t)	grain weight (QTL)-7-2(t)			7	This QTL controls 1000-grain weight, being located on chromosome 7 closely associated by marker RM125.	 Character as QTL - Yield and productivity								
2819	qYLD-1-1(t) (yld1.1)	qYLD-1-1(t) (yld1.1)	yield per plant (QTL)-1-1(t)	yield per plant (QTL)-1-1(t)			1	This QTL controls grain yield per plant, being located on chromosome 1 closely associated by marker RM220.	 Character as QTL - Yield and productivity								
2820	qYLD-1-2(t) (yld1.2)	qYLD-1-2(t) (yld1.2)	yield per plant (QTL)-1-2(t)	yield per plant (QTL)-1-2(t)			1	This QTL controls grain yield per plant, being located on chromosome 1 closely associated by marker RM626.	 Character as QTL - Yield and productivity								
2821	qYLD-2-2(t) (yld2.1)	qYLD-2-2(t) (yld2.1)	yield per plant (QTL)-2-2(t)	yield per plant (QTL)-2-2(t)			2	This QTL controls grain yield per plant, being located on chromosome 2 closely associated by marker RM208 or RM250.	 Character as QTL - Yield and productivity								
2822	qFRR-8-1(t)	qFRR-8-1(t)	filled/total rough rice ratio (QTL)-8-1(t)	filled/total rough rice ratio (QTL)-8-1(t)			8	This QTL controls ratio of filled grain to total rough rice, being located on chromosome 8 closely associated by marker CDO99.	 Character as QTL - Seed sterility								
2823	qGD-4-1(t) (GD)	qGD-4-1(t) (GD)	grain density (QTL)-4-1(t)	grain density (QTL)-4-1(t)			4	This QTL controls grain density (the weight of rough rice grain per liter), being located on chromosome 4 closely associated by marker RM471.	 Character as QTL - Grain quality								
2824	qGD-8-1(t) (GD)	qGD-8-1(t) (GD)	grain density (QTL)-8-1(t)	grain density (QTL)-8-1(t)			8	This QTL controls grain density (the weight of rough grain per liter), being located on chromosome 8 closely associated by marker RM210.	 Character as QTL - Grain quality								
2825	qDR-10-1(t) (DR)	qDR-10-1(t) (DR)	dehusked grain ratio (QTL)-10-1(t)	dehusked grain ratio (QTL)-10-1(t)			10	This QTL controls percentage of dehusked grain weight compared to rough rice weight, being locaed on chromosome 10 closely associated by marker RM474.	 Character as QTL - Grain quality								
2826	qGG-7-1(t) (GG)	qGG-7-1(t) (GG)	green rice percentage (QTL)-7-1(t)	green rice percentage (QTL)-7-1(t)			7	This QTL controls green rice percentage, being located on chromosome 7 closely associated by marker RM445.	 Character as QTL - Yield and productivity								
2827	qGG-12-1(t) (GG)	qGG-12-1(t) (GG)	green rice percentage (QTL)-12-1(t)	green rice percentage (QTL)-12-1(t)			12	This QTL controls green rice weight compared to rough rice weight, being located on chromosome 12 closely associated by marker RM270.	 Character as QTL - Yield and productivity								
2828	qDYG-7-1(t) (DYG)	qDYG-7-1(t) (DYG)	damaged-yellow grain (QTL)-7-1(t)	damaged-yellow grain (QTL)-7-1(t)			7	This QTL controls percentage of damaged-yellow rice grain, being located on chromosome 7 closely associated by RM125.	 Character as QTL - Grain quality								
2829	qDYG-9-1(t) (DYG)	qDYG-9-1(t) (DYG)	damaged-yellow grain (QTL)-9-1(t)	damaged-yellow grain (QTL)-9-1(t)			9	This QTL controls damaged-yellow grain percentage, being located on chromosome 9 closely associated by RM358.	 Character as QTL - Grain quality								
2830	qDYG-10-1(t) (DYG)	qDYG-10-1(t)  (DYG)	damaged-yellow grain (QTL)-10-1(t)	damaged-yellow grain (QTL)-10-1(t)			10	This QTL controls damaged-yellow grain percentage, being located on chromosome 10 closely associated by marker RM474.	 Character as QTL - Grain quality								
2831	qRG-7-1(t) (RG)	qRG-7-1(t) (RG)	red grain (QTL)-7-1(t)	red grain (QTL)-7-1(t)			7	This QTL controls red grain percentage, being located on chromosome 7 closely associated by marker RM125.	 Character as QTL - Grain quality								
2832	qRG-12-1(t) (RG)	qRG-12-1(t) (RG)	red grain (QTL)-12-1(t)	red grain (QTL)-12-1(t)			12	This QTL controls red grain percentage, being located on chromosome 12 closely associated by marker RG869.	 Character as QTL - Grain quality								
2833	qMR-10-1(t) (MR)	qMR-10-1(t) (MR)	milled rice grain (QTL)-10-1(t)	milled rice grain (QTL)-10-1(t)			10	This QTL controls milled rice grain percentage, being located on chromosome 10 closely associated by marker RM474.	 Character as QTL - Grain quality								
2834	qHR-1-1(t) (HR)	qHR-1-1(t) (HR)	head rice grain (QTL)-1-1(t)	head rice grain (QTL)-1-1(t)			1	This QTL controls head rice grain percentage, being located on chromosome 1 closely associated by marker RM431.	 Character as QTL - Yield and productivity								
2835	qHR-2-1(t) (HR)	qHR-2-1(t) (HR)	head rice grain (QTL)-2-1(t)	head rice grain (QTL)-2-1(t)			3	This QTL controls head rice grain percentage, being located on chromosome 2 closely associated by marker RM263.	 Character as QTL - Yield and productivity								
2836	qHR-5-1(t) (HR)	qHR-5-1(t) (HR)	head rice grain (QTL)-5-1(t)	head rice grain (QTL)-5-1(t)			5	This QTL controls head rice grain percentage, being located on chromosome 5 closely associated by marker RM178.	 Character as QTL - Yield and productivity								
2837	qBR-1-1(t) (BR)	qBR-1-1(t) (BR)	broken rice grain (QTL)-1-1(t)	broken rice grain (QTL)-1-1(t)			1	This QTL controls broken rice grain percentage, being located on chromosome 1 closely associated by marker RM23.	 Character as QTL - Grain quality								
2838	qBR-1-2(t) (BR)	qBR-1-2(t) (BR)	broken rice grain (QTL)-1-2(t)	broken rice grain (QTL)-1-2(t)			1	This QTL controls broken rice grain percentage, being located on chromosome 1 closely associated by marker RM265.	 Character as QTL - Grain quality								
2839	qBR-2-1(t) (BR)	qBR-2-1(t) (BR)	broken rice grain (QTL)-2-1(t)	broken rice grain (QTL)-2-1(t)			2	This QTL controls broken rice grain percentage, being located on chromosome 2 closely associated by marker RM263.	 Character as QTL - Grain quality								
2840	qBR-5-1(t) (BR)	qBR-5-1(t) (BR)	broken rice grain (QTL)-5-1(t)	broken rice grain (QTL)-5-1(t)			5	This QTL controls broken rice grain percentage, being located on chromosome 5 closely associated by marker RM178.	 Character as QTL - Grain quality								
2841	qCR-2-1(t) (CR)	qCR-2-1(t) (CR)	crushed rice grain (QTL)-2-1(t)	crushed rice grain (QTL)-2-1(t)			2	This QTL controls crushed rice grain percentage, being located on chromosome 2 closely associated by marker RM263.	 Character as QTL - Grain quality								
2842	qCR-3-1(t) (CR)	qCR-3-1(t) (CR)	crushed rice grain (QTL)-3-1(t)	crushed rice grain (QTL)-3-1(t)			3	This QTL controls crushed rice grain percentage, being located on chromosome 3 closely associated by marker RM251.	 Character as QTL - Grain quality								
2843	qAC-6-1(t) (AC)	qAC-6-1(t) (AC)	amylose content (QTL)-6-1(t)	amylose content (QTL)-6-1(t)			6	This QTL controls amylose content of rice grain, being located on chromosome 6 closely associated by marker RM170.	 Character as QTL - Grain quality								
2844	qGC-6-1(t) (GC)	qGC-6-1(t) (GC)	gel consistency (QTL)-6-1(t)	gel consistency (QTL)-6-1(t)			6	This QTL controls gel consistency of rice grain, being located on chromosome 6 closely associated by marker RM50.	 Seed - Physiological traits - Taste								
2845	SPL5-2(T)	spl5-2(t), spl5-2	SPOTTED LEAF5-2(T)	spotted leaf5-2(t), spotted leaf 5-2		spl5-1(t)		Recessive gene. Semi-dwarf. An allele of spl5 (spl5-1). Semi-dwarf. Small reddish-brown spots appear on leaf blade until 60 days after sowing. Resistant to rice blast and bacterial blight due to hypersensitivity to pathogens.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061346			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000207 - plant height	
2846	SPL12	Spl12(t), Spl12*, Spl12	SPOTTED LEAF 12	Spotted leaf12(t), Spotted leaf-12, spotted leaf 12				Dominant gene. Dwarf. Small (<3mm in diameter) lesions of reddish-brown color, visible after 3-4 weeks after sowing. Due to cell death caused by hypersensitivity, this mutant is resistant to rice blast and bacterial blight diseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Lesion mimic,  Vegetative organ - Culm			GR:0061342			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000207 - plant height	PO:0000003 - whole plant , PO:0009011 - plant structure 
2847	SPL13	spl13(t), spl13*, spl13	SPOTTED LEAF 13	spotted leaf13(t), spotted leaf-13, spotted leaf 13				Recessive gene. Semi-dwarf. Small (<3mm in diameter), discrete brown lesions appear on the surface of leaf blade 10 weeks after sowing. Due to cell death caused by hypersensitivity  , this mutant is resistant to rice blast and bacterial blight deseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Lesion mimic,  Vegetative organ - Culm			GR:0061343			GO:0006952 - defense response	TO:0000063 - mimic response, TO:0000207 - plant height	PO:0009011 - plant structure , PO:0000003 - whole plant 
2848	SPL14	spl14(t), spl14*, spl14	SPOTTED LEAF 14	spotted leaf14(t), spotted leaf-14, spotted leaf 14				Recessive gene. Semi-dwarf. Medium sized (5-10mm), discrete, dark-brown lesions appear 10 weeks after sowing. Due to cell death of hypersensitivity, this mutant is resistant to rice blast and bacterial blight diseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061344			GO:0006952 - defense response	TO:0000207 - plant height, TO:0000063 - mimic response	PO:0009011 - plant structure , PO:0000003 - whole plant 
2849	SPL15	Spl15(t), Spl15*, Spl15	SPOTTED LEAF 15	Spotted leaf15(t), Spotted leaf-15, Spotted leaf 15				Dominant gene. Dwarf. Medium sized (5-10mm), discrete, light brown lesions appear 3-4 weeks after sowing. Due to cell death caused by hypersensitivity, this mutant is resistant to rice blast and bacterial blight diseases. PO:0009011; plant structure ; PO:0000003; whole plant.	 Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic			GR:0061345			GO:0006952 - defense response	TO:0000207 - plant height, TO:0000063 - mimic response	PO:0000003 - whole plant , PO:0009011 - plant structure 
2850	qAC-3-1(t) (qAC-3)	qAC-3-1(t) (qAC-3)	amylose content (QTL)-3-1(t)	amylose content (QTL)-3-1(t)			3	This QTL controls amylose content of rice grain, being located on chromosome 3 flanked by markers R1927 and R3226.	 Seed - Physiological traits - Storage substances								
2851	qAC-4-1(t) (qAC-4)	qAC-4-1(t) (qAC-4)	amylose content (QTL)-4-1(t)	amylose content (QTL)-4-1(t)			4	This QTL controls amylose content of rice grain, being located on chromosome 4 flanked by markers C1100 and R1783.	 Seed - Physiological traits - Storage substances								
2852	qAC-5-2(t) (qAC-5)	qAC-5-2(t) (qAC-5)	amylose content (QTL)-5-2(t)	amylose content (QTL)-5-2(t)			5	This QTL controls amylose content of rice grain, being located on chromosome 5 flanked by markers C624 and C128.	 Seed - Physiological traits - Storage substances								
2853	qAC-6-2(t) (qAC-6)	qAC-6-2(t) (qAC-6)	amylose content (QTL)-6-2(t)	amylose content (QTL)-6-2(t)			6	This QTL controls amylose content of rice grain, being located on chromosome 6 flanked by markers R2869 and R1962.	 Seed - Physiological traits - Storage substances								
2854	qASS-3-1(t) (qASS-3)	qASS-3-1(t) (qASS-3)	alkali spreading score (QTL)-3-1(t)	alkali spreading score (QTL)-3-1(t)			3	This QTL controls alkali spreading score of rice grain, being located on chromosome 3 flanked by markers C25 and C515.	 Seed - Physiological traits - Taste								
2855	qASS-6-2(t) (qASS-6a)	qASS-6-2(t) (qASS-6a)	alkali spreading score (QTL)-6-2(t)	alkali spreading score (QTL)-6-2(t)			6	This QTL controls alkali spreading score of rice grain, being located on chromosome 6 flanked by markers G200 and C1478.	 Seed - Physiological traits - Taste								
2856	qASS-6-3(t) (qASS-6b)	qASS-6-3(t) (qASS-6b)	alkali spreading score (QTL)-6-3(t)	alkali spreading score (QTL)-6-3(t)			6	This QTL controls alkali spreading score of rice grain, being located on chromosome 6 flanked by markers R2869 and R1962.	 Seed - Physiological traits - Taste								
2857	qGC-1-1(t) (qGC-1)	qGC-1-1(t) (qGC-1)	gel consistency (QTL)-1-1(t)	gel consistency (QTL)-1-1(t)			1	This QTL controls gel consistency of rice grain, being located on chromosome 1 flanked by markers C122 and R886.	 Seed - Physiological traits - Taste								
2858	qGC-2-2(t) (qGC-2a)	qGC-2-2(t) (qGC-2a)	gel consistency (QTL)-2-2(t)	gel consistency (QTL)-2-2(t)			2	This QTL controls gel consistency of rice grain, being located on chromosome 2 flanked by markers R712 and G227.	 Seed - Physiological traits - Taste								
2859	qGC-2-3(t) (qGC-2b)	qGC-2-3(t) (qGC-2b)	gel consistency (QTL)-2-3(t)	gel consistency (QTL)-2-3(t)			2	This QTL controls gel consistency of rice grain, being located on chromosome 2 flanked by markers G1314B and G132.	 Seed - Physiological traits - Taste								
2860	qGC-6-2(t) (qGC-6a)	qGC-6-2(t) (qGC-6a)	gel consistency (QTL)-6-2(t)	gel consistency (QTL)-6-2(t)			6	This QTL controls gel consistency of rice grain, being located on chromosome 6 flanked by markers L688 and G200	 Seed - Physiological traits - Taste								
2861	qGC-6-3(t) (qGC-6b)	qGC-6-3(t) (qGC-6b)	gel consistency (QTL)-6-3(t)	gel consistency (QTL)-6-3(t)			6	This QTL controls gel consistency of rice grain, being located on chromosome 6 flanked by markers C556 and R2071.	 Seed - Physiological traits - Taste								
2862	ROC1	Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23	RICE OUTMOST CELL-SPECIFIC GENE 1	Rice outmost cell-specific gene 1(t), Rice outermost cell-specific gene-1, Homeobox-leucine zipper protein ROC1, Homeodomain transcription factor ROC1, HD-ZIP protein ROC1, Protein RICE OUTERMOST CELL-SPECIFIC 1, GLABRA 2-like homeobox protein 1, homeodomain-leucine zipper transcription factor 23, OsHDZIP transcription factor 23	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC1		8	Q6ZAR0. GL2-type homeobox gene. This gene is located on chromosome 8 at 84.2 cM map position. This gene is specifically expressed in the L1 protoderm, and therefore is a suitable marker for the epidermal layer. GLABRA2(Gl2)-type homeobox. an ortholog of an Arabidopsis L1-specific gene ATML1. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). 	 Other	Os08g0187500	LOC_Os08g08820.2, LOC_Os08g08820.1	GR:0061416			GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009741 - response to brassinosteroid stimulus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding	TO:0002677 - brassinosteroid sensitivity, TO:0000492 - leaf shape, TO:0000064 - embryo related trait	PO:0009009 - plant embryo , PO:0009025 - vascular leaf 
2863	ROC2	Roc2(t), Roc2, GL2-2, OsHDZ17, OsHDZIP17, HDZ17, HDZIP17	RICE OUTMOST CELL-SPECIFIC GENE 2	Rice outmost cell-specific gene 2(t), Rice outermost cell-specific gene-2, Homeobox-leucine zipper protein ROC2, Homeodomain transcription factor ROC2, HD-ZIP protein ROC2, Protein RICE OUTERMOST CELL-SPECIFIC 2, GLABRA 2-like homeobox protein 2, homeodomain-leucine zipper transcription factor 17, OsHDZIP transcription factor 17	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC2		4	Q0J9X2. GL2-type of homeobox gene. This gene is located on chromosome 4 at 19.8 cM of map position. Gl2-type homeobox. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). PO:0030123: panicle inflorescence.	 Other	Os04g0627000	LOC_Os04g53540.1, LOC_Os04g53540.2, LOC_Os04g53540.3, LOC_Os04g53540.4	GR:0061417			GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0000492 - leaf shape, TO:0000064 - embryo related trait	PO:0009005 - root , PO:0025034 - leaf , PO:0009047 - stem , PO:0009030 - carpel , PO:0009025 - vascular leaf , PO:0009009 - plant embryo 
2864	ROC3	Roc3(t), Roc3, GL2-3, OsHDZ39, OsHDZIP39, HDZ39, HDZIP39	RICE OUTMOST CELL-SPECIFIC GENE 3	Rice outmost cell-specific gene 3(t), Rice outermost cell-specific gene-3, Homeobox-leucine zipper protein ROC3, Homeodomain transcription factor ROC3, HD-ZIP protein ROC3, Protein RICE OUTERMOST CELL-SPECIFIC 3, GLABR 2-like homeobox protein 3, homeodomain-leucine zipper transcription factor 39, OsHDZIP transcription factor 39	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC3		10	A2ZAI7(indica). Q336P2(japonica). A GL2-type of homeobox gene. This gene is located on chromosome 10 at 86.1 cM of map position. Gl2-type homeobox. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). 	 Other,  Tolerance and resistance - Stress tolerance	Os10g0575600	LOC_Os10g42490.1, LOC_Os10g42490.2	GR:0061418			GO:0009741 - response to brassinosteroid stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0009651 - response to salt stress	TO:0000064 - embryo related trait, TO:0000492 - leaf shape, TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity	PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0009025 - vascular leaf , PO:0009005 - root , PO:0025034 - leaf 
2865	ROC4	Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16	RICE OUTMOST CELL-SPECIFIC GENE 4	Rice outmost cell-specific gene 4(t), Rice outermost cell-specific gene-4, Homeobox-leucine zipper protein ROC4, Homeodomain transcription factor ROC4, HD-ZIP protein ROC4, Protein RICE OUTERMOST CELL-SPECIFIC 4, GLABRA 2-like homeobox protein 4, homeodomain-leucine zipper transcription factor 16, OsHDZIP transcription factor 16	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC4	roc4	4	Q7Y0V9. A GL2-type of homeobox gene. This gene is located on chromosome 4 at 38.2 cM map position. Gl2-type homeobox. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:1904278: positive regulation of wax biosynthetic process.	 Reproductive organ - Heading date,  Other,  Tolerance and resistance - Stress tolerance	Os04g0569100	LOC_Os04g48070.3, LOC_Os04g48070.2, LOC_Os04g48070.1	GR:0061419			GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048573 - photoperiodism, flowering, GO:0010025 - wax biosynthetic process, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0006350 - transcription	TO:0000492 - leaf shape, TO:0006001 - salt tolerance, TO:0000137 - days to heading, TO:0000276 - drought tolerance, TO:0002616 - flowering time, TO:0000064 - embryo related trait, TO:0000172 - jasmonic acid sensitivity	PO:0009025 - vascular leaf , PO:0009009 - plant embryo 
2866	OUL1	ROC5, Roc5(t), Roc5, GL2-5, OsROC5, CLF1, OsCLF1, OsOUL1, OsHDZ7, OsHDZIP7, HDZ7, HDZIP7	OUTCURVED LEAF 1	Rice outmost cell -specific gene 5(t), Rice outermost cell-specific gene-5, Homeobox-leucine zipper protein ROC5, Homeodomain transcription factor ROC5, HD-ZIP protein ROC5, Protein RICE OUTERMOST CELL-SPECIFIC 5, GLABRA 2-like homeobox protein 5, outcurved leaf1, Rice ooutmost cell-specific gene5, curly leaf 1, homeodomain-leucine zipper transcription factor 7, OsHDZIP transcription factor 7	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC5	oul1, clf1	2	Q6EPF0. AB101648. A GL2-type of homeobox gene. This gene is located on chromosome 2 at 44.5 cM of map position. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. homeodomain leucine zipper class IV gene. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). TO:0006064: rolled leaf.	 Other,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os02g0674800	LOC_Os02g45250.1	GR:0061420			GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0051302 - regulation of cell division, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0009741 - response to brassinosteroid stimulus, GO:0006350 - transcription, GO:0009753 - response to jasmonic acid stimulus	TO:0002677 - brassinosteroid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000064 - embryo related trait, TO:0000492 - leaf shape, TO:0006001 - salt tolerance	PO:0009025 - vascular leaf , PO:0009009 - plant embryo 
2867	ADL2	adl2	ADAXIALIZED LEAF 2	adaxialized leaf-2				This plant is dwarf, its leaves are rilled in reverse direction (abaxial side becomes inside) and frequently twisted. In many traits, adl2 shows more modified phenotypes than adl1. PO:0009047; stem ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage.	 Vegetative organ - Leaf			GR:0060015			GO:0007275 - multicellular organismal development	TO:0000576 - stem length, TO:0000492 - leaf shape	PO:0009025 - vascular leaf , PO:0009047 - stem 
2868	qUVR-1(t)	qUVR-1(t)	ultraviolet-B resistance (QTL)-1(t)	ultraviolet-B resistance (QTL)-1(t)			1	This QTL is resistant to ultraviolet-B radiation, being located  on chromosome 1 closely linked with  the markers C1370 and C122.	 Tolerance and resistance - Stress tolerance								
2869	qUVR-3(t)	qUVR-3(t)	ultraviolet-B resistance (QTL)-3(t)	ultraviolet-B resistance (QTL)-3(t)			3	This QTL is resistant to ultraviolet-B radiation, being located on chromosome 3 closely linked with C746.	 Tolerance and resistance - Stress tolerance								
2870	qUVR-10(t)	qUVR-10(t)	ultraviolet-B resistance (QTL)-10(t)	ultraviolet-B resistance (QTL)-10(t)			10	This QTL is resistant to ultraviolet-B radiation, being located on chromosome 10 closely linked with the marker R2174.	 Tolerance and resistance - Stress tolerance								
2871	GSTZ1	OsGSTZ1, GSTZ-1	ZETA GLUTATHIONE S-TRANSFERASE 1	glutathine S-transferase1, glutathine S-transferase 1, Glutathione S-transferase (GSTZ)-1, Glutathione S-transferase-1	ZETA GLUTATHIONE S-TRANSFERASE 1		12	This gene encodes glutathine S-transferase, which is  the enzyme in the catabolic pathway of tyrosine and phenylalanine. Located on the short arm of chromosome 12, being arranged tandemly with and in the upsteam of OsGSTZ2. The expressions of OsGSTZ1 and OsGSTZ2 are regulated differently in the cultured rice cells. AF309381. one of the qCTS12 (a major QTL for seedling cold tolerance) candidate genes. GO:1990532: stress response to nickel ion. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0210200	LOC_Os12g10720.3, LOC_Os12g10720.2, LOC_Os12g10720.1	GR:0061493			GO:0004364 - glutathione transferase activity, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold, GO:0010045 - response to nickel ion, GO:0009617 - response to bacterium, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity	TO:0000303 - cold tolerance	
2872	GSTZ2	OsGSTZ2, GSTZ-2	ZETA GLUTATHIONE S-TRANSFERASE 2	glutathione S-transferase2, glutathione S-transferase 2, Glutathione S-transferase (GSTZ)-2, Glutathione S-transferase-2, glutathione transferase Z2	ZETA GLUTATHIONE S-TRANSFERASE 2		12	LOC_Os12g10730. This gene encodes glutathione S-transferase, which is the enzyme in the catabolic pathway of tyrosine and phenylalanine. OsGSTZ2 is located on the short arm of chromosome 12, being arranged tandemly with and in the downstream of OsGSTZ1. AF402792.  one of the qCTS12 (a major QTL for seedling cold tolerance) candidate genes.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0210300	LOC_Os12g10730.1, LOC_Os12g10730.2	GR:0061494			GO:0016740 - transferase activity, GO:0009409 - response to cold, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0004364 - glutathione transferase activity, GO:0005737 - cytoplasm, GO:0009072 - aromatic amino acid family metabolic process	TO:0000303 - cold tolerance	
2873	qSDS-1(t)	qSDS-1(t)	survival days of seedlings (Salt tolerance) (QTL)-1(t)	survival days of seedlings (Salt tolerance) (QTL)-1(t)			1	This QTL controls survival days of seedlings in relation to salt tolerance, being located on chromosome 1 between markers C813 and C86.	 Tolerance and resistance - Stress tolerance								
2874	qSDS-6(t)	qSDS-6(t)	survival days of seedlings (Salt tolerance) (QTL)-6(t)	survival days of seedlings (Salt tolerance) (QTL)-6(t)			6	This QTL controls survival days of seedlings in relation to salt tolerance, being located on chromosome 6 between markers C214 and R2549.	 Tolerance and resistance - Stress tolerance								
2875	qSDS-7(t)	qSDS-7(t)	survival days of seedlings (Salt tolerance) (QTL)-7(t)	survival days of seedlings (Salt tolerance) (QTL)-7(t)			7	This QTL controls survival days of seedlings in relation to salt tolerance, being located on chromosome 7 between markers R2401 and L538T7.	 Tolerance and resistance - Stress tolerance								
2876	qSNC-7(t)	qSNC-7(t)	shoot Na+ concentration (QTL)-7(t)	shoot Na+ concentration (QTL)-7(t)			7	This QTl cntrols shoot Na+ concentration in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2877	qSNTQ-7(t)	qSNTQ-7(t)	shoot Na+ total quantity (QTL)-7(t)	shoot Na+ total quantity (QTL)-7(t)			7	This QTL controls shoot Na+ total quantity in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2879	qRNC-9(t)	qRNC-9(t)	root Na+ concentration (QTL)-9(t)	root Na+ concentration (QTL)-9(t)			9	This QTL controls root Na+ concentration in relation to salt tolerance, being located on chromosome 9 between markers R1751 and R2638.	 Tolerance and resistance - Stress tolerance								
2880	qRNTQ-1(t)	qRNTQ-1(t)	root Na+ total quantity (QTL)-1(t)	root Na+ total quantity (QTL)-1(t)			1	This QTL controls root Na+ total quantity in relation to salt tolerance, being located on chromosome 1 between markers C813 and C86.	 Tolerance and resistance - Stress tolerance								
2881	qRKC-4(t)	qRKC-4(t)	root K+ concentration (QTL)-4(t)	root K+ concentration (QTL)-4(t)			4	This QTL controls root K+ concentration in relation to salt tolerance, being located on chromosome 4 between markers C891 tn C513.	 Tolerance and resistance - Stress tolerance								
2882	qRKC-7(t)	qRKC-7(t)	root K+ concentration (QTL)-7(t)	root K+ concentration (QTL)-7(t)			7	This QTL controls root K+ concentration in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2883	qRKTQ-7(t)	qRKTQ-7(t)	root K+ total quantity (QTL)-7(t)	root K+ total quantity (QTL)-7(t)			7	This QTL controls root K+ total quantity in relation to salt tolerance, being located on chromosome 7 between markers C1057 and R2401.	 Tolerance and resistance - Stress tolerance								
2884	qRDGF-2-1(t) (rdgf2a)	qRDGF-2-1(t) (rdgf2a)	retention degree of greenness of the flag leaf (QTL)-2-1(t)	retention degree of greenness of the flag leaf (QTL)-2-1(t)			2	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 2 flanked by markers RM29 and RM341."	 Character as QTL - Plant growth activity								
2885	qRDGF-2-2(t) (rdgf2b)	qRDGF-2-2(t) (rdgf2b)	retention degree of greenness of the flag leaf (QTL)-2-2(t)	retention degree of greenness of the flag leaf (QTL)-2-2(t)			2	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 2 flanked by markers RM263 and RM221."	 Character as QTL - Plant growth activity								
2886	qRDGF-2-3(t) (rdgf2c)	qRDGF-2-3(t) (rdgf2c)	retention degree of greenness of the flag leaf (QTL)-2-3(t)	retention degree of greenness of the flag leaf (QTL)-2-3(t)			2	"This QTL controls retention degree of greenness in the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 2 flanked by markers RM6 and RM240."	 Character as QTL - Plant growth activity								
2887	qRDGF-3(t) (rdgf3)	qRDGF-3(t) (rdgf3)	retention degree of greenness of the flag leaf (QTL)-3(t)	retention degree of greenness of the flag leaf (QTL)-3(t)			3	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 3 flanked by markers RM293 and RM143."	 Character as QTL - Plant growth activity								
2888	qRDGF-4(t) (rdgf4)	qRDGF-4(t) (rdgf4)	retention degree of greenness of the flag leaf (QTL)-4(t)	retention degree of greenness of the flag leaf (QTL)-4(t)			4	"This QTL controls retention degree of greenness of the flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 4 flanked by markers MRG5943 and RM261."	 Character as QTL - Plant growth activity								
2889	qRDGF-8-1(t) (rdgf8a)	qRDGF-8-1(t) (rdgf8a)	retention degree of greenness of the flag leaf (QTL)-8-1(t)	retention degree of greenness of the flag leaf (QTL)-8-1(t)			8	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 8 flanked by markers RM126 and RM310."	 Character as QTL - Plant growth activity								
2890	qRDGF-9(t) (rdgf9)	qRDGF-9(t) (rdgf9)	retention degree of greenness of the flag leaf (QTL)-9(t)	retention degree of greenness of the flag leaf (QTL)-9(t)			9	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 9 flanked by markers MRG2533 and RM257."	 Character as QTL - Plant growth activity								
2891	qRDGF-6(t) (rdgf6)	qRDGF-6(t) (rdgf6)	retention degree of greenness of the flag leaf (QTL)-6(t)	retention degree of greenness of the flag leaf (QTL)-6(t)			6	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 6 flanked by markers RM275 and RM30."	 Character as QTL - Plant growth activity								
2892	qRDGF-7(t) (rdgf7)	qRDGF-7(t) (rdgf7)	retention degree of greenness of the flag leaf (QTL)-7(t)	retention degree of greenness of the flag leaf (QTL)-7(t)			7	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 7 flanked by markers RM82 and RM125."	 Character as QTL - Plant growth activity								
2893	qRDGF-8-2(t) (rdgf8b)	qRDGF-8-2(t) (rdgf8b)	retention degree of greenness of the flag leaf (QTL)-8-2(t)	retention degree of greenness of the flag leaf (QTL)-8-2(t)			8	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 8 flanked by markers RM331 and RM342A."	 Character as QTL - Plant growth activity								
2894	qRDGF-10(t) (rdgf10)	qRDGF-10(t) (rdgf10)	retention degree of greenness of the flag leaf (QTL)-10(t)	retention degree of greenness of the flag leaf (QTL)-10(t)			10	"This QTL controls retention degree of greenness of flag leaf at 30 days after heading in relation to \"stay green\" trait, being located on chromosome 10 flanked by markers RM269b and RM304."	 Character as QTL - Plant growth activity								
2895	qRRGF-2(t) (rrgf2)	qRRGF-2(t) (rrgf2)	relative retention of greenness of the flag leaf (QTL)-2(t)	relative retention of greenness of the flag leaf (QTL)-2(t)			2	This trait stands the relative retension of greenness of flag leaf at 30 days after heading against that at heading day. This QTL is located on chromosome 2 flanked by markers RM263 and RM221.	 Character as QTL - Plant growth activity								
2896	qRRGF-10(t) (rrgf10)	qRRGF-10(t) (rrgf10)	relative retention of greenness of the flag leaf (QTL)-10(t)	relative retention of greenness of the flag leaf (QTL)-10(t)			10	This trait stands for the relative retention of greenness of the flag leaf at 30 days after heading to that at heading date. This QTL is located on chromosome 10 flanked by markers RM304 and RM147.	 Character as QTL - Plant growth activity								
2897	qRRGF-7(t) (rrgf7)	qRRGF-7(t) (rrgf7)	relative retention of greenness of the flag leaf (QTL)-7(t)	relative retention of greenness of the flag leaf (QTL)-7(t)			7	This trait stands for the relative greenness retentin of flag leaf at 30 days after heading against that ot heading date. This QTL is located on chromosome 7 flanked by markers RM2 and RM11.	 Character as QTL - Plant growth activity								
2898	qRRGF-12(t) (rrgf12)	qRRGF-12(t) (rrgf12)	relative retention of greenness of the flag leaf (QTL)-12(t)	relative retention of greenness of the flag leaf (QTL)-12(t)			12	This trait stands for the relative greenness retention of flag leaf at 30 days after heading against that at heading date. This QTL is located on chromosome 12 flanked by markers RM277 and RM309.	 Character as QTL - Plant growth activity								
2899	qRDGS-2-1(t) (rdgs2a)	qRDGS-2-1(t) (rdgs2a)	retention degree of greenness of the second leaf (QTL)-2-1(t)	retention degree of greenness of the second leaf (QTL)-2-1(t)			2	"This QTL controls retention degree of greenness of the second leaf (greenness at 30 days after heading) in relation to \"stay-green\" trait, being located on chromosome 2 flanked by markers RM263 and RM233A."	 Character as QTL - Plant growth activity								
2900	qRDGS-2-2(t) (rdgs2b)	qRDGS-2-2(t) (rdgs2b)	retention degree of greenness of the second leaf (QTL)-2-2(t)	retention degree of greenness of the second leaf (QTL)-2-2(t)			2	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 2 flanked by markers RM29 and RM341."	 Character as QTL - Plant growth activity								
2901	qRDGS-6(t) (rdgs6)	qRDGS-6(t) (rdgs6)	retention degree of greenness of the second leaf (QTL)-6(t)	retention degree of greenness of the second leaf (QTL)-6(t)			6	"This QTL controls greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 6 flanked by markers RM275 and RM30."	 Character as QTL - Plant growth activity								
2902	qRDGS-8-1(t) (rdgs8a)	qRDGS-8-1(t) (rdgs8a)	retention degree of greenness of the second leaf (QTL)-8-1(t)	retention degree of greenness of the second leaf (QTL)-8-1(t)			8	"This QTL controls retention degree of greenness of the second leaf (greenness at 30 days after heading) in relation to \"stay-green\" trait, being located on chromosome 8 flanked by markers RM331 and RM342A."	 Character as QTL - Plant growth activity								
2903	qRDGS-8-2(t) (rdgs8b)	qRDGS-8-2(t) (rdgs8b)	retention degree of greenness of the second leaf (QTL)-8-2(t)	retention degree of greenness of the second leaf (QTL)-8-2(t)			8	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 8 flanked by markers RM25 and RM126."	 Character as QTL - Plant growth activity								
2904	qRDGS-3-1(t) (rdgs3a)	qRDGS-3-1(t) (rdgs3a)	retention degree of greenness of the second leaf (QTL)-3-1(t)	retention degree of greenness of the second leaf (QTL)-3-1(t)			3	"This QTL controls retention degree of greenness of the second leaf (greenness measured at 30 days after heading) in relation to \"stay-green\" trait, being located on chromosome 3 flanked by markers RM282 and RM473A."	 Character as QTL - Plant growth activity								
2905	qRDGS-3-2(t) (rdgs3b)	qRDGS-3-2(t) (rdgs3b)	retention degree of greenness of the second leaf (QTL)-3-2(t)	retention degree of greenness of the second leaf (QTL)-3-2(t)			3	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 3 flanked by markers RM293 and RM143."	 Character as QTL - Plant growth activity								
2906	qRDGS-7(t) (rdgs7)	qRDGS-7(t) (rdgs7)	retention degree of greenness of the second leaf (QTL)-7(t)	retention degree of greenness of the second leaf (QTL)-7(t)			7	"This QTL controls retention degree of greenness o the second leaf at 30 days after heading in relation to \"stay-green\" trait, being located on chromosome 7 flanked by markers RM118 and RM248."	 Character as QTL - Plant growth activity								
2907	qRDGS-10(t) (rdgs10)	qRDGS-10(t) (rdgs10)	retention degree of greenness of the second leaf (QTL)-10(t)	retention degree of greenness of the second leaf (QTL)-10(t)			10	"This QTL controls retention degree of greenness of the second leaf at 30 days after heading in relatio to \"stay-green\" trait, being located on chromosome 10 flanked by markers RM147 and RM228."	 Character as QTL - Plant growth activity								
2908	qRRGS-2(t) (rrgs2)	qRRGS-2(t) (rrgs2)	relative retention of greenness of the second leaf (QTL)-2(t)	relative retention of greenness of the second leaf (QTL)-2(t)			2	"This trait stands for the relative retention of greenness of the second leaf at 30 days after heading against that of heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 2 flanked by markers RM263 and RM221."	 Character as QTL - Plant growth activity								
2909	qRRGS-3(t) (rrgs3)	qRRGS-3(t) (rrgs3)	relative retention of greenness of the second leaf (QTL)-3(t)	relative retention of greenness of the second leaf (QTL)-3(t)			3	"This trait stands for the relative retention of greenness of the second leaf at 30 days after heading against that ao heading date in relation to \"saty-green\" trait. This QTL is located on chromosome 3 flanked by markers RM175 and RM36."	 Character as QTL - Plant growth activity								
2910	qRRGS-10(t) (rrgs10)	qRRGS-10(t) (rrgs10)	relative retention of greenness of the second leaf (QTL)-10(t)	relative retention of greenness of the second leaf (QTL)-10(t)			9	"This trait stand for the relative retention of greenness of the second leaf at 30 days after heading against that at heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 10 flanked by markers RM222 and RM216."	 Character as QTL - Plant growth activity								
2911	qRRGS-7(t) (rrgs7)	qRRGS-7(t) (rrgs7)	relative retention of greenness of the second leaf (QTL)-7(t)	relative retention of greenness of the second leaf (QTL)-7(t)			7	"This trait stands for the relative greenness of the second leaf at 30 days after heading against that at heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 7 flanked by markers RM11 and RM346."	 Character as QTL - Plant growth activity								
2912	qRRGS-6(t) (rrgs6)	qRRGS-6(t) (rrgs6)	relative retention of greenness of the second leaf (QTL)-6(t)	relative retention of greenness of the second leaf (QTL)-6(t)			6	"This trait stands for the relative greenness of second leaf at 30 days after heading against that at heading date in relation to \"stay-green\" trait. This QTL is located on chromosome 6 flanked by markers RM510 and RM314."	 Character as QTL - Plant growth activity								
2913	qRGAF-2-1(t) (rgaf2a)	qRGAF-2-1(t) (rgaf2a)	retention of the green area of the flag leaf (QTL)-2-1(t)	retention of the green area of the flag leaf (QTL)-2-1(t)			2	This trait stands for visual ranking of retained green area in the flag leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 2 flanked by markers RM145 and RM322.	 Character as QTL - Plant growth activity								
2914	qRGAF-2-2(t) (rgaf2b)	qRGAF-2-2(t) (rgaf2b)	retention of the green area of the flag leaf (QTL)-2-2(t)	retention of the green area of the flag leaf (QTL)-2-2(t)			2	This trait stands for visual ranking of retained green area in the flag leaf at 30 days after heading (1: nearly complete death, to 5: nearly complete green). This QTL is located on chromosome 2 flanked by markers RM108b and RM266.	 Character as QTL - Plant growth activity								
2915	qRGAF-4-1(t) (rgaf4a)	qRGAF-4-1(t) (rgaf4a)	retention of the green area of the flag leaf (QTL)-4-1(t)	retention of the green area of the flag leaf (QTL)-4-1(t)			4	This trait stands for visual ranking of retained  green area in the flag leaf at 30 days after heading (1: nearly complete death, to 5: nearly complete green). This QTL is located on chromosome 4 flanked by markers MRG5943 and RM261.	 Character as QTL - Plant growth activity								
2916	qRGAF-6-1(t) (rgaf6a)	qRGAF-6-1(t) (rgaf6a)	retention of the green area of the flag leaf (QTL)-6-1(t)	retention of the green area of the flag leaf (QTL)-6-1(t)			6	This trait stands for visual ranking of retained green area of flag leaf at 30 days after heading (1: nearly complete death, to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM150 and RM3.	 Character as QTL - Plant growth activity								
2917	qRGAF-7(t) (rgaf7)	qRGAF-7(t) (rgaf7)	retention of the green area of the flag leaf (QTL)-7(t)	retention of the green area of the flag leaf (QTL)-7(t)			7	This trait stands for visual ranking of retained green area in the flag leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 7 flanked by markers RM11 and RM346.	 Character as QTL - Plant growth activity								
2918	qRGAF-3(t) (rgaf3)	qRGAF-3(t) (rgaf3)	retention of the green area of the flag leaf (QTL)-3(t)	retention of the green area of the flag leaf (QTL)-3(t)			3	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 3 flanked by markers RM293 and RM143.	 Character as QTL - Plant growth activity								
2919	qRGAF-10(t) (rgaf10)	qRGAF-10(t) (rgaf10)	retention of the green area of the flag leaf (QTL)-10(t)	retention of the green area of the flag leaf (QTL)-10(t)			10	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is locate on chromosome 10 flanked by markers RM269b and RM304.	 Character as QTL - Plant growth activity								
2920	qRGAF-4-2(t) (rgaf4b)	qRGAF-4-2(t) (rgaf4b)	retention of the green area in the flag leaf (QTL)-4-2(t)	retention of the green area in the flag leaf (QTL)-4-2(t)			4	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 4 flanked by markers RM131 and RM280.	 Character as QTL - Plant growth activity								
2921	qRGAF-6-2(t) (rgaf6b)	qRGAF-6-2(t) (rgaf6b)	retention of the green area of the flag leaf (QTL)-6-2(t)	retention of the green area of the flag leaf (QTL)-6-2(t)			6	This trait stands for visual ranking of retained green area of flag leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM275 and RM30.	 Character as QTL - Plant growth activity								
2922	qRGAF-8(t) (rgaf8)	qRGAF-8(t) (rgaf8)	retention of the green area of the flag leaf (QTL)-8(t)	retention of the green area of the flag leaf (QTL)-8(t)			8	This trait stands for visual ranking of retained green area in the flag leaf 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 8 flanked by markers RM25 and RM126.	 Character as QTL - Plant growth activity								
2923	qRGAS-6-1(t) (rgas6a)	qRGAS-6-1(t) (rgas6a)	retention of the green area of the 2nd leaf (QTL)-6-1(t)	retention of the green area of the 2nd leaf (QTL)-6-1(t)			6	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM150 and RM3.	 Character as QTL - Plant growth activity								
2924	qRGAS-3(t) (rgas3)	qRGAS-3(t) (rgas3)	retention of the green area of the 2nd leaf (QTL)-3(t)	retention of the green area of the 2nd leaf (QTL)-3(t)			3	This trait stands for visual ranking of retained green area in the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 3 flanked by markers RM570 and RM85.	 Character as QTL - Plant growth activity								
2925	qRGAS-7-1(t) (rgas7a)	qRGAS-7-1(t) (rgas7a)	retention of the green area of the 2nd leaf (QTL)-7-1(t)	retention of the green area of the 2nd leaf (QTL)-7-1(t)			7	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 7 flanked by markers RM118 and RM248.	 Character as QTL - Plant growth activity								
2926	qRGAS-7-2(t) (rgas7b)	qRGAS-7-2(t) (rgas7b)	retention of the green area of the 2nd leaf (QTL)-7-2(t)	retention of the green area of the 2nd leaf (QTL)-7-2(t)			7	This trait stands for visual ranking of retaind green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 7 flanked by markers RM298 and RM82.	 Character as QTL - Plant growth activity								
2927	qRGAS-6-2(t) (rgas6b)	qRGAS-6-2(t) (rgas6b)	retention of the green area of the 2nd leaf (QTL)-6-2(t)	retention of the green area of the 2nd leaf (QTL)-6-2(t)			6	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 6 flanked by markers RM275 and RM30.	 Character as QTL - Plant growth activity								
2928	qRGAS-10(t) (rgas10)	qRGAS-10(t) (rgas10)	retention of the green area of the 2nd leaf (QTL)-10(t)	retention of the green area of the 2nd leaf (QTL)-10(t)			10	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 10 flanked by marker RM271 and RM269b.	 Character as QTL - Plant growth activity								
2929	qRGAS-11(t) (rgas11)	qRGAS-11(t) (rgas11)	retention of the green area of the 2nd leaf (QTL)-11(t)	retention of the green area of the 2nd leaf (QTL)-11(t)			11	This trait stands for visual ranking of retained green area of the 2nd leaf at 30 days after heading (1: nearly complete death to 5: nearly complete green). This QTL is located on chromosome 11 flanked by markers RM286 and RM20B.	 Character as QTL - Plant growth activity								
2930	HYPRP5	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 5	low-temperature germianability (QTL)-3-1(t), hybrid proline- or glycine-rich protein 5, Hybrid Proline-Rich Protein 5	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 5		3	This QTL controls low-temperature germinability, being located on chromosome 3 flanked by markers GBR3001 and GBR3002. AB369214, AB369215. AB510406, AB510407.  AB433790-AB433805 (O.sativa and other wild rice species).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Dormancy	Os03g0103300	LOC_Os03g01320.2, LOC_Os03g01320.1				GO:0009845 - seed germination, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0009627 - systemic acquired resistance, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009738 - abscisic acid mediated signaling	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000253 - seed dormancy, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	
2931	qLTG-3-2(t)	qLTG-3-2(t)	low-temperature germinability (QTL)-3-2(t)	low-temperature germinability (QTL)-3-2(t)			3	This QTL controls low-temperature germinability, being located on chromosome 3 flanked by markers RM3436 and RM2593.	 Tolerance and resistance - Stress tolerance								
2932	qLTG-4-3(t)	qLTG-4-3(t)	low-temperature germinability (QTL)-4-3(t)	low-temperature germinability (QTL)-4-3(t)			4	This QTL controls low-temperature germinability, being located on the distal end of short arm of chromosome 4 flanked by markers R1854 and G1184.	 Tolerance and resistance - Stress tolerance								
2933	XA27	Xa27(t), Xa27(t)*, Xa27	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 27	Xanthomonas oryzae pv. oryzae resistance 27, Xanthomonas campestris pv. oryzae resistance-27			6	Bacterial blight (Xanthomonas rryzae pv. oryzae (X00)) resistance gene introduced from Oryza minuta, being located on the long arm of chromosome 6 flanked by markers M1081 and M1095. PO:0009011; plant structure ; PO:0000003; whole plant. AY986491, AY986492, AY986493. JF304301-JF304303, HQ888852-HQ888857, JN016505-JN016521, JN601064 (O. sativa and other wild rice species). GO:0140367: antibacterial innate immune response.	 Tolerance and resistance - Disease resistance	Os06g0599600	LOC_Os06g39810.1	GR:0061464			GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0009617 - response to bacterium	TO:0000175 - bacterial blight disease resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
2936	PI34	Pi34, RMg71, Pi24(t)	PYRICULARIA ORYZAE RESISTANCE 34	Pyricularia oryzae resistance 34, Magnaporthe grisea resistance 34, Blast resistance 34			11	Partial resistance to rice blast in testing nursery under natural conditions. This gene was located on chromosome 11 flanked by RFLP markers E1126 and C1172. Original line is Chubu32(Japonica). Map position (79.1-91.4 cM). Pi24(t) in Zenbayashi et al. 2002, 2003 was renamed Pi34 (Zenbayashi et al. 2004).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
2937	WBPH6	Wbph6	WHITEBACKED PLANTHOPPER RESISTANCE 6	Whitebacked planthopper resistance6			11	Dominant gene for whitebacked planthopper resistance. This gene was located on chromosome 11 linked to a SSR marker RM167 with the genetic distance of 21.2cM.	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect		
2938	AN9	An9, An9(t)*	AWN 9	Awn9, Awn-9			1	Dominant gene, being located on chromosome 1 flanked by SSR markers RM8111 (3.0cM) and RM8051 (3.6cM). Under Taichung 65 background, homozygous An9 produces 5-30mm long awns mainly at the top of spikelets in panicle branches. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061427			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2939	AN10	An10, An10*	AWN 10	Awn10, Awn-10			1	Dominant gene, being located on chromosome 1 flanked by SSR markers RM237 (15.1cM) and RM265 (3.0cM). Under Taichung 65 background, An10 produces awns shorter and sparcer awns than An9. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061428			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2940	AN6	An6, An6(t), An6*	AWN 6	Awn6		An6-mer	8	Dominant gene, being located on the long arm of chromosome 8 linked with SSR marker RM3496 by 11.7cM. PO:0006032; awn.	 Reproductive organ - Spikelet, flower, glume, awn			GR:0061426			GO:0007275 - multicellular organismal development	TO:0000072 - awn length	PO:0006032 - lemma awn 
2941	AN6-MER	An6-mer	AWN 6-MER	Awn 6-mer		An6, An6-mer	8	A multiple allele at An6 locus, obtained from Oryza meridionalis. Under Taichung 65 background, homozygous An6-mer produces 2 to 4cm long awns.	 Reproductive organ - Spikelet, flower, glume, awn						GO:0007275 - multicellular organismal development		
2942	AN7-GLUM	An7-glum	AWN7-GLUM	Awn7-glum		An7	5	Dominant gene, an allele of An7, obtained from Australian wild rice O. glumaepatula.  This gene is located on chromosome 5 flanked by markers RM3419 (3.6cM) and RM289 (3.6cM).	 Reproductive organ - Spikelet, flower, glume, awn						GO:0007275 - multicellular organismal development		
2943	AN8-GLUM	An8-glum	AWN8-GLUM	Awn8-glum		An8	4	Dominant gene. An allele of An8, obtained from Australian wild rice O. glumaepatula. This gene is located on chromosome 4 flanked by markers RM261 (12.2cM) and RM1359 (7.1cM).	 Reproductive organ - Spikelet, flower, glume, awn						GO:0007275 - multicellular organismal development		
2944	TD1	Td1(t)	TWISTED DWARF 1	Twisted dwarf1(t)				Dominant dwarf gene, with twisted leaf. Heterozygotes are semi-dwarf, while homozygotes extreme dwarf and often lethal.	 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
2945	GO	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7	GOLIATH	goliath, PLASTOCHRON 3, plastochron3, PLASTOCHRON3/GOLIATH, lateral organ boundaries domain 3-7		go-1(pla3-3), go-2(pla3-4), pla3-1, pla3-2, pla3	3	Recessive gene for large embryo. Homozygote often has morphological aberration resulting lethal. This gene is located on chromosome 3 flanked by molecular marker CAPS3-145 and SSR45 (Taramino et al. 2003). All the surviving pla3 plants showed a shortened plastochron and conversion of panicle primary branches to vegetative shoots (Kawakatsu et al. 2009). AB447403. PO:0009009; embryo ; PO:0009010; seed. an AMP1 ortholog. LOC_Os03g57670.1. TO:0006064: rolled leaf.	 Seed - Morphological traits - Embryo,  Vegetative organ - Leaf,  Heterochrony,  Biochemical character	Os03g0790600	LOC_Os03g57660.1, LOC_Os03g57660.2, LOC_Os03g57660.3, LOC_Os03g57660.4, LOC_Os03g57670.1	GR:0061476			GO:0051781 - positive regulation of cell division, GO:0010080 - regulation of floral meristem growth, GO:0004181 - metallocarboxypeptidase activity, GO:0009653 - anatomical structure morphogenesis, GO:0004180 - carboxypeptidase activity, GO:0010082 - regulation of root meristem growth, GO:0009790 - embryonic development, GO:0010229 - inflorescence development, GO:0010081 - regulation of inflorescence meristem growth, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010305 - leaf vascular tissue pattern formation, GO:0005886 - plasma membrane, GO:0009908 - flower development, GO:0009640 - photomorphogenesis, GO:0007275 - multicellular organismal development, GO:0006508 - proteolysis, GO:0048366 - leaf development, GO:0005634 - nucleus	TO:0000287 - brown rice shape, TO:0000655 - leaf development trait, TO:0000064 - embryo related trait	PO:0001050 - leaf development stage , PO:0009010 - seed , PO:0009009 - plant embryo 
2946	YL	yl(t), yl	YELLOW-GREEN LEAF	yellow-green leaf (t), yellowish-green leaf			5	yellow-green leaf due to low chlorophyll b content. This gene is located on chromosome 5 flanked by SSR markers RM3838 (3.4cM) and RM169 (13.9cM).	 Coloration - Chlorophyll			GR:0061492			GO:0015995 - chlorophyll biosynthetic process		
2947	qLTG-2-2(t) (qLTG-2)	qLTG-2-2(t) (qLTG-2)	low temperature germinability (QTL)-2-2(t)	low temperature germinability (QTL)-2-2(t)			2	This QTL controls low temperature germinability, being located on chromosome 2 flanked by markers XNpb67 and R418.	 Tolerance and resistance - Stress tolerance								
2948	qLTG-7(t)	qLTG-7(t)	low temperature germinability (QTL)-7 (t)	low temperature germinability (QTL)-7 (t)			7	TL controls low temperature germinability, being located on chromosome 7 flanked by markers R1440 and R1357.	 Tolerance and resistance - Stress tolerance								
2949	qLTG-12(t)	qLTG-12(t)	low temperature germinability (QTL)-12(t)	low temperature germinability (QTL)-12(t)			12	This QTL controls low temperature germinability, being located on chromosome 12 flanked by markers XNpb148 and C1069.	 Tolerance and resistance - Stress tolerance								
2951	PLDalpha1	RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2	PHOSPHOLIPASE  D ALPHA 1	Rice phospholipase D-1, Phospholipase D alpha 1, PLD alpha 1, Choline phosphatase 1, Phosphatidylcholine-hydrolyzing phospholipase D 1, phospholipase Dalpha1, C2 Domain-Containing Protein 2	PHOSPHOLIPASE D ALPHA 1	pldalpha1-1, pldalpha1, ospldalpha1, ospldalpha1-1, ospldalpha1-2, OsPLDalpha1-1a	1	This gene controls phospholipase D in rice, being located on chromosome 1 at 24.0cM flanked by two markers RG472 and RG246. AB571657. AB001920, D73411. AU091558, AU032202, BE039748, AU032715, D47979, AU032201, AU062713, AW155115, AW155255, AU182480, AU184488, BI118697, AU197861, AU197860, BI799720, BI813684, BI807829, AU184489. EC=3.1.4.4 Q43007.MF966931 (Oryza officinalis OsPLDalpha1-1a). TO:0001069: cooking quality trait. the GenBank repository with accession numbers: O. glaberrima [IRGC100854 (MF774061), IRGC101800 (MF919319), IRGC102196 (MF919320), IRGC102489 (MF919321), IRGC102512 (MF919322), IRGC102600b (MF919323), IRGC102925 (MF919324), IRGC103750 (MF919325)]; O. bartii [IRGC100117 (MF919326), IRGC101317 (MF919327), IRGC104102 (MF919328), IRGC105990 (MF919329), IRGC106239 (MF919330), IRGC106294 (MF919331)]; O. nivara [CR100008 (MF919334), CR100400 (MF919335), CR100429 (MF91336), IRGC80547 (MF919332), IRGC81847 (MG725633), IRGC92713 (MF919337), IRGC92930 (MG725634), IRGC100189 (MF919338), IRGC106397 (MF919333)]; O. rufipogon [CR100013 (MG725637), IRGC80610 (MG725635), IRGC81976 (MG725638), IRGC83823 (MG725640), IRGC89224 (MG725641), IRGC99551 (MG725642), IRGC103308 (MF919339), IRGC104308 (MG725643) IRGC104867 (MF966922), IRGC105491 (MG7256360), IRGC105569 (MF966923), IRGC105902 (MF966924), IRGC106162 (MF966925), IRGC106336 (MF966926), IRGC106433 (MF966927), IRGC113652 (MF966928)]; O. longistaminata [IRGC101200 (MG725645), IRGC104301 (MG725646), IRGC105206 (MG725647)]; O. meridionalis [IRGC101146 (MG725648)]; O. glumaepatula [IRGC100184 (MF966930), IRGC104387 (MF966929)]; O. officinalis [IRGC101152 (MF966931), IRGC105674 (MF966932), IRGC106501 (MF966933)]; O. australiensis [IRGC105275 (MG725650)]; O. punctata [IRGC105158 (MG725651)]; O. minuta [IRGC101100 (MG725652), IRGC101128 (MG725653)]; O. latifolia [IRGC105139 (MG725654)]; Feng-Ai-Zhan (MF975521); Kitake (MF975522); Minghui63 (MF975523); Nagina22 (MF975524); PR114 (MF975525); Pusa44 (MF975526).	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Taste,  Seed - Physiological traits - Storage substances,  Biochemical character	Os01g0172400	LOC_Os01g07760.1, LOC_Os01g07760.2				GO:0016042 - lipid catabolic process, GO:0016020 - membrane, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding, GO:0006654 - phosphatidic acid biosynthetic process, GO:0070290 - NAPE-specific phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process, GO:0009631 - cold acclimation, GO:0004630 - phospholipase D activity, GO:0050826 - response to freezing	TO:0000408 - hot paste viscosity, TO:0000276 - drought tolerance, TO:0000374 - breakdown viscosity, TO:0000462 - gelatinization temperature, TO:0000379 - cool paste viscosity, TO:0000409 - peak viscosity, TO:0000303 - cold tolerance, TO:0000162 - seed quality, TO:0000196 - amylose content, TO:0000095 - osmotic response sensitivity	
2952	PLDALPHA3	OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2, OsC2DP52, C2DP52	PHOSPHOLIPASE D ALPHA 3	Phospholipase D alpha 3, Phospholipase D alpha 2, PLD alpha 2, PLD2, phospholipase Dalpha3, phospholipase eta 1, C2 Domain-Containing Protein 52	PHOSPHOLIPASE D ALPHA 3		6	This gene controls phospholipase D in rice, being located on chromosome 5 at 87.5, tandemly arrayed with RPLD4 and RPLD3 flanked by markers, RG648 (84.3cM), RG424 (84.7cM) and RG172 (102.9cM). EC=3.1.4.4 P93844. AB001919, AP003629. AU089782, AU089781. OsPLDeta1 in Elias et al. 2002.	 Biochemical character	Os06g0604400	LOC_Os06g40190.1				GO:0009751 - response to salicylic acid stimulus, GO:0016020 - membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0005509 - calcium ion binding, GO:0016042 - lipid catabolic process, GO:0004630 - phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process, GO:0070290 - NAPE-specific phospholipase D activity	TO:0000172 - jasmonic acid sensitivity	
2953	PLDalpha4	OsPLDalpha4, RPLD3, OsPLDeta2, OsC2DP50, C2DP50	PHOSPHOLIPASE D ALPHA 4	Phospholipase D alpha 4, phospholipase Dalpha4, phospholipase D eta 2, C2 Domain-Containing Protein 50	PHOSPHOLIPASE D ALPHA 4		6	This gene controls phospholipase D in rice, being located on chromosome 5 at 87.5cM tandemly arrayed with RPLD2 and RPLD4, and flanked by markers RG648 (84.3cM), RG424 (84.7cM) and RG172 (102.9cM). AF271356. OsPLDeta2 in Elias et al. 2002.	 Tolerance and resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os06g0604200	LOC_Os06g40170.1				GO:0016042 - lipid catabolic process, GO:0046470 - phosphatidylcholine metabolic process, GO:0009733 - response to auxin stimulus, GO:0004630 - phospholipase D activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005509 - calcium ion binding, GO:0016020 - membrane, GO:0070290 - NAPE-specific phospholipase D activity, GO:0009651 - response to salt stress, GO:0009735 - response to cytokinin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	
2954	PLDalpha5	OsPLDalpha5, RPLD4, OsPLDeta3, OsC2DP51, C2DP51	PHOSPHOLIPASE D ALPHA 5	Phospholipase D alpha 5, phospholipase Dalpha5, phospholipase D eta 3, C2 Domain-Containing Protein 51	PHOSPHOLIPASE D ALPHA 5		6	This gene controls phospholipase D in rice, being located on chromosome 5 at 87.5cM tandemly arrayed with RPLD2 and RPLD3, flanked by markers RG648 (84.3cM), RG424 (84.7cM) and RG172 (102.9cM). AF271357. OsPLDeta3 in Elias et al. 2002.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance	Os06g0604300	LOC_Os06g40180.1				GO:0004630 - phospholipase D activity, GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0070290 - NAPE-specific phospholipase D activity, GO:0016020 - membrane, GO:0046470 - phosphatidylcholine metabolic process, GO:0009735 - response to cytokinin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016042 - lipid catabolic process	TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity	
2955	PLDdelta2	OsPLDdelta2, RPLD5, OsPLDnu1, OsC2DP33, C2DP33	PHOSPHOLIPASE D DELTA 2	Phospholipase D delta 2, Phospholipase D nu 1, C2 Domain-Containing Protein 33	PHOSPHOLIPASE D DELTA 2		3	This gene controls pholspholipase D in rice, being located on chromosome 3 at 158.2cM distal to the marker RG418X (154.4cM). AF271358. OsPLDnu1 in Elias et al. 2002. PO:0030123: panicle inflorescence.	 Biochemical character	Os03g0840800	LOC_Os03g62410.1, LOC_Os03g62410.2				GO:0005509 - calcium ion binding, GO:0004630 - phospholipase D activity, GO:0016020 - membrane, GO:0016042 - lipid catabolic process, GO:0070290 - NAPE-specific phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process		PO:0009049 - inflorescence 
2956	TUB1	OsTUB1, TUBB1, OSTB-34	BETA-TUBULIN 1	beta tubulin 1, Tubulin beta-1 chain, Beta-1-tubulin	BETA-TUBULIN 1		1	This gene is one of isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 1. BETA-TUBULIN;ALPHA-TUBULIN. Q43594. X78142.	 Biochemical character	Os01g0282800	LOC_Os01g18050.1				GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0051258 - protein polymerization, GO:0007018 - microtubule-based movement, GO:0005198 - structural molecule activity, GO:0005874 - microtubule		
2957	TUB2	OsTUB2, TUBB2	BETA-TUBULIN 2	beta tubulin 2, Tubulin beta-2 chain, Beta-2-tubulin	BETA-TUBULIN 2		3	This gene is one of isotype genes controlling β-tubulin, a basic component of microtubules. This gene is located on chromosome 3. Q8H7U1.	 Biochemical character	Os03g0105600	LOC_Os03g01530.1				GO:0005874 - microtubule, GO:0005525 - GTP binding, GO:0007018 - microtubule-based movement, GO:0003924 - GTPase activity, GO:0051258 - protein polymerization, GO:0005198 - structural molecule activity		
2958	TUB3	OsTUB3, TUBB3, RTUB-2	BETA-TUBULIN 3	beta tubulin 3, Tubulin beta-3 chain, Beta-3-tubulin, beta tubulin 2	BETA-TUBULIN 3		6	This gene is one of isotype genes which control beta-tubulin, a basic component of microtubules in rice.  Q40665. L33263. KC626108-KC626119 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os06g0671900	LOC_Os06g46000.1				GO:0003924 - GTPase activity, GO:0005198 - structural molecule activity, GO:0005525 - GTP binding, GO:0051258 - protein polymerization, GO:0007018 - microtubule-based movement, GO:0005874 - microtubule		
2959	TUB4	OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16	BETA-TUBULIN 4	beta tubulin 4, Tubulin beta-4 chain, Beta-4-tubulin, beta tubulin 1, beta-tubulin isotype 16	BETA-TUBULIN 4		1	This gene is one of isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 1. P45960. X78143. D30716. L19598. AJ306592 (promoter region).	 Biochemical character	Os01g0805900	LOC_Os01g59150.1, LOC_Os01g59150.2				GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0005198 - structural molecule activity, GO:0005874 - microtubule, GO:0009531 - secondary cell wall, GO:0051258 - protein polymerization, GO:0007018 - microtubule-based movement		PO:0009047 - stem 
2960	TUB5	OsTUB5, TUBB5, OSTB-50, R2242	BETA-TUBULIN 5	beta tubulin 5, Tubulin beta-5 chain, Beta-5-tubulin	BETA-TUBULIN 5		2	This gene is one of the isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 2. P46265. X79367. D30717.	 Biochemical character	Os02g0167300	LOC_Os02g07060.1				GO:0007018 - microtubule-based movement, GO:0051258 - protein polymerization, GO:0003924 - GTPase activity, GO:0005198 - structural molecule activity, GO:0005525 - GTP binding, GO:0005874 - microtubule		
2961	TUB6	OsTUB6, TUBB6	BETA-TUBULIN 6	beta tubulin 6, Tubulin beta-6 chain, Beta-6-tubulin	BETA-TUBULIN 6		5	This gene is one of the isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 5. Q76FS3. tubulin/FtsZ domain- containing protein.	 Biochemical character	Os05g0413200	LOC_Os05g34170.2, LOC_Os05g34170.3				GO:0003924 - GTPase activity, GO:0007018 - microtubule-based movement, GO:0005525 - GTP binding, GO:0005874 - microtubule, GO:0005198 - structural molecule activity, GO:0051258 - protein polymerization		
2962	TUB7	OsTUB7, TUBB7, pTUB22	BETA-TUBULIN 7	beta tubulin 7, Tubulin beta-7 chain, Beta-7-tubulin	BETA-TUBULIN 7		3	This gene is one of the isotype genes which control beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 3. P37832. D13224.	 Biochemical character	Os03g0780600	LOC_Os03g56810.1				GO:0005198 - structural molecule activity, GO:0003924 - GTPase activity, GO:0005874 - microtubule, GO:0007018 - microtubule-based movement, GO:0051258 - protein polymerization, GO:0005525 - GTP binding		
2963	TUB8	OsTUB8, TUBB8	BETA TUBULIN 8	beta tubulin 8, Tubulin beta-8 chain, Beta-8-tubulin	BETA TUBULIN 8 		3	This gene is one on the isotype genes which control Beta-tubulin, a basic component of microtubules in rice. This gene is located on chromosome 3. Q76FS2.	 Biochemical character	Os03g0661300	LOC_Os03g45920.1				GO:0003924 - GTPase activity, GO:0005198 - structural molecule activity, GO:0005874 - microtubule, GO:0007018 - microtubule-based movement, GO:0051258 - protein polymerization, GO:0005525 - GTP binding		
2964	EXPA1	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA	ALPHA-EXPANSIN 1	Rice expansin-1, Expansin-A1, Alpha-expansin-1, Expansin S2	ALPHA-EXPANSIN 1		4	This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. Q7XWU8, Y07782(cDNA), AF394543(Genomic). D42004, D40668. GO:1902347: response to strigolactone. GO:0080167: response to karrikin.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0228400	LOC_Os04g15840.1				GO:0005576 - extracellular region, GO:0007047 - cell wall organization, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005618 - cell wall, GO:0008083 - growth factor activity, GO:0019898 - extrinsic to membrane, GO:0009664 - plant-type cell wall organization, GO:0001558 - regulation of cell growth		
2965	EXPA2	OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2	ALPHA-EXPANSIN 2	Rice expansin-2, Expansin-A2, Alpha-expansin-2	ALPHA-EXPANSIN 2		1	This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. Q40636. U30477(cDNA), AF39544(Genomic). D24200, D47507.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0823100	LOC_Os01g60770.1				GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0007047 - cell wall organization, GO:0005576 - extracellular region, GO:0008083 - growth factor activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0019898 - extrinsic to membrane		
2966	EXPA3	OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3	ALPHA-EXPANSIN 3	Rice expansin-3, Expansin-A3, Alpha-expansin-3	ALPHA-EXPANSIN 3		5	This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. Q40637. U30479(cDNA). D23861. GO:0090548: response to nitrate starvation.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0276500	LOC_Os05g19570.1				GO:0009651 - response to salt stress, GO:0005576 - extracellular region, GO:0016036 - cellular response to phosphate starvation, GO:0009664 - plant-type cell wall organization, GO:0007047 - cell wall organization, GO:0019898 - extrinsic to membrane, GO:0048364 - root development, GO:0005618 - cell wall, GO:0008083 - growth factor activity, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000115 - root mass density, TO:0002665 - root hair length, TO:0000227 - root length, TO:0006001 - salt tolerance	PO:0007520 - root development stage , PO:0020121 - lateral root , PO:0025025 - root system , PO:0020127 - primary root 
2967	EXPA4	OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22	ALPHA-EXPANSIN 4	Rice expansin-4, Expansin-A4, Alpha-expansin-4	ALPHA-EXPANSIN 4		5	This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. A2Y5R6(indica), Q0DHB7(japonica). U85246(cDNA), AF394545(Genomic).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character	Os05g0477600	LOC_Os05g39990.1				GO:0008083 - growth factor activity, GO:0005618 - cell wall, GO:0001558 - regulation of cell growth, GO:0019898 - extrinsic to membrane, GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0048364 - root development, GO:0007047 - cell wall organization, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000656 - root development trait, TO:0000227 - root length, TO:0000306 - root thickness	PO:0009005 - root , PO:0007520 - root development stage 
2968	XA21D	Xa21D	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21D	Xanthomonas oryzae pv. oryzae resistance 21D			11	One of Xa21 gene family. Xa21D encodes a receptor-like protein carrying leucine-rich repeat (LRR) motifs in the presumed extracellular domain that determines race-specific recognition. (20660)	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
2969	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80, OLR, OsOLR, GW3p6, OsGW3p6, OsMADS1GW3p6, MADS1GW3p6, qLGY3/OsLG3b/GW3p6	LEAFY HULL STERILE 1	MADS box gene1, leafy hull sterile1, leafy hull sterile 1, LEAFY HULL STERILE1, naked seed rice, over developed palea, MADS-box transcription factor 1, Protein LEAFY HULL STERILE 1, Protein SEPALLATA-like, abnormal floral organs, long grain 3b, DLN repressor 80, DLN motif protein 80, Oat-like rice	MADS-BOX TRANSCRIPTION FACTOR 1	osmads1-z, ago, mads1/nsr, osmads1, qlgy3, lgy3, lhs1-z, OsMADS1Olr, osmads1ko, Olr, OsMADS1lgy3	3	One of the MADS box genes causing flower organ deformation. This is the same gene as leafy hull sterile 1 (lhs1), being located on chromosome 3 between two markers, RG100 and RZ313.Deformation of lemma and palea showing leafy structures accompanied by various malformations of floral organs and low seed setting. A2XDY1(indica). Q10PZ9(japonica). GRO:0007151; 6.1-flowering stage ; GRO:0007158; spikelet development. L34271. EU327204-EU327254 (Oryza rufipogon, Oryza nivara). GU727114-GU727133 (wild rice species). FJ811125-FJ811165 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ223344-DQ223351, DQ223383-DQ223397, DQ223402, DQ223403, DQ223414-DQ223418, DQ911248, DQ911249 (wild rice species). EF069904-EF069973 (O. sativa and wild rice species). JQ414694-JQ414737 (wild rice species). a SEP-like gene. TO:20109: vascular bundle development trait. TO:0000869: glume anatomy and morphology trait. TO:0000975: grain width. PO:0006000; hull (sensu Poaceae). PO:0006384; gynoecium (sensu Poaceae). PO:0006441; stamen (sensu Poaceae). TO:0000862: floral organ morphology trait. TO:1000024: palea morphology trait. TO:0000856: lodicule length. TO:0000847: panicle inflorescence morphology trait. TO:1000023: lemma morphology trait. GO:2000904: regulation of starch metabolic process.  GO:0062052: starch granule initiation.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - panicle,  Seed - Morphological traits - Endosperm,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0215400	LOC_Os03g11614.1	GR:0060502		50.5	GO:0010093 - specification of floral organ identity, GO:0030154 - cell differentiation, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0005515 - protein binding, GO:0010076 - maintenance of floral meristem identity, GO:0010582 - floral meristem determinacy, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0045165 - cell fate commitment, GO:0009553 - embryo sac development, GO:0001708 - cell fate specification, GO:0042127 - regulation of cell proliferation, GO:0043565 - sequence-specific DNA binding, GO:0048437 - floral organ development, GO:0007275 - multicellular organismal development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005982 - starch metabolic process, GO:0045595 - regulation of cell differentiation, GO:0048316 - seed development	TO:0000097 - amylopectin content, TO:0000225 - stamen number, TO:0006037 - carpel shape, TO:0006009 - lodicule anatomy and morphology trait, TO:0002659 - pistil number, TO:0006010 - lodicule number, TO:0000209 - palea number, TO:0000208 - lemma number, TO:0006029 - glume number, TO:0006038 - floral organ number, TO:0000592 - 1000-dehulled grain weight, TO:0000650 - lemma length, TO:0000304 - seed thickness, TO:0000149 - seed width, TO:0000146 - seed length, TO:0000344 - days to flower, TO:0000399 - grain thickness, TO:0000416 - embryosac abortion, TO:0020033 - glume length, TO:0002656 - starch grain shape, TO:0000417 - lemma and palea pubescence, TO:0000575 - endosperm related trait, TO:0000436 - spikelet sterility, TO:0000437 - male sterility, TO:0002616 - flowering time, TO:0000245 - pollen free, TO:0000657 - spikelet anatomy and morphology trait, TO:0000734 - grain length, TO:0000089 - panicle type, TO:0001000 - glume cover, TO:0000040 - panicle length, TO:0000223 - pistil anatomy and morphology trait, TO:0002600 - flower organ size, TO:0000487 - endosperm color, TO:0000396 - grain yield, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000196 - amylose content, TO:0000455 - seed set percent, TO:0000622 - flower development trait, TO:0000266 - chalky endosperm, TO:0002653 - endosperm storage protein content, TO:0000696 - starch content, TO:0000377 - cooked grain elongation, TO:0000207 - plant height, TO:0000274 - floret anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0006022 - floral organ development trait, TO:0000499 - flower anatomy and morphology trait, TO:0002730 - grain shape, TO:0000355 - heterosis, TO:0000397 - grain size, TO:0006012 - carpel anatomy and morphology trait, TO:0000162 - seed quality, TO:0000614 - lemma shape, TO:0000670 - floret number, TO:0000449 - grain yield per plant, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000411 - seed length to width ratio	PO:0005360 - aleurone layer , PO:0009037 - lemma , PO:0001049 - lodicule development stage , PO:0001048 - palea development stage , PO:0009038 - palea , PO:0007615 - flower development stage , PO:0009030 - carpel , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009036 - lodicule , PO:0009039 - glume , PO:0009029 - stamen , PO:0009082 - spikelet floret , PO:0009062 - gynoecium , PO:0001047 - lemma development stage , PO:0000229 - flower meristem , PO:0006000 - caryopsis hull , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0009046 - flower , PO:0009010 - seed 
2972	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1	LOW GLUTELIN CONTENT 1	Low glutelin content1, Low glutelin content 1, GLUTELIN 1, lack of glutelin subunit1, lack of glutelin subunit 1, lack of glutelin subunit-1, rice glutelin-8	GLUTELIN 1		2	A dominant gene that suppresses the glutelin multigene family via RNA silencing and reduces glutelin content in rice grains. , Low glutelin content. PO:0009010; seed.	 Seed - Physiological traits - Storage substances			GR:0060497,GR:0060390			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
2974	OSH1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75	HOMEOBOX 1	Oryza sativa homeobox1, Homeobox protein OSH1, Homeobox protein knotted-1-like 6, Homeobox protein knotted-1-like 1, Rice KNOX gene-1, KNOX PROTEIN 1, KNOX protein 1, KNOX protein 1, HOMEOBOX 1, HOMEOBOX PROTEIN OSH1	HOMEOBOX PROTEIN OSH1	osh1, osh1-1, osh1-2	3	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH1 is responsible to maintain cells in an indeterminate state in all meristematic tissues. D16507. P46609. C19151, AU091905. AF003599. an ortholog of KNOTTED1 (KN1). GO:0090511: periclinal cell division.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Shoot apical meristem(SAM),  Character as QTL - Germination,  Other,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity	Os03g0727000	LOC_Os03g51690.3, LOC_Os03g51690.2, LOC_Os03g51690.1	GR:0061179			GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0048653 - anther development, GO:0043565 - sequence-specific DNA binding, GO:0048437 - floral organ development, GO:0009901 - anther dehiscence, GO:0009413 - response to flooding, GO:0016132 - brassinosteroid biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0009629 - response to gravity, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002693 - gravity response trait, TO:0002672 - auxin content, TO:0000492 - leaf shape, TO:0000432 - temperature response trait, TO:0002688 - leaf lamina joint bending, TO:0000524 - submergence tolerance, TO:0000206 - leaf angle, TO:0002689 - leaf sheath length, TO:0000447 - filled grain number	PO:0009025 - vascular leaf , PO:0007045 - coleoptile emergence stage , PO:0001004 - anther development stage , PO:0007057 - 0 seed germination stage 
2975	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3	HOMEOBOX 15	Oryza sativa homeobox15, Rice KNOX gene-15, Homeobox protein knotted-1-like 12, Homeobox protein OSH15, Homeobox protein HOS3, Homeobox protein knotted-1-like 3, KNOX PROTEIN 3, Oryza sativa Homeobox 15	HOMEOBOX PROTEIN OSH15	d6-1, d6-ID6, d6-tankanshirasasa, osh15	7	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. loss-of-function of the OSH15 gene causes the d6-type dwarf phenotype in rice (Sato et al. 1999). Class 1 KNOX gene. Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. AF323786. AF003601. O65034(indica). O80416(japonica). PO:0030123: panicle inflorescence. TO:0000755: shoot internode anatomy and morphology trait. TO:0000975: grain width.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Vegetative organ - Shoot apical meristem(SAM),  Character as QTL - Germination	Os07g0129700	LOC_Os07g03770.1	GR:0061109,GR:0061181			GO:0005634 - nucleus, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0016131 - brassinosteroid metabolic process, GO:0010268 - brassinosteroid homeostasis, GO:0008283 - cell proliferation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0009845 - seed germination, GO:0009741 - response to brassinosteroid stimulus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009629 - response to gravity, GO:0009413 - response to flooding, GO:0048831 - regulation of shoot development, GO:0080006 - internode patterning, GO:0010229 - inflorescence development	TO:0000576 - stem length, TO:0000524 - submergence tolerance, TO:0002693 - gravity response trait, TO:0000145 - internode length, TO:0000492 - leaf shape, TO:0000621 - inflorescence development trait, TO:0002677 - brassinosteroid sensitivity, TO:0002676 - brassinosteroid content, TO:0000346 - tiller number, TO:0000019 - seedling height, TO:0000397 - grain size, TO:0000734 - grain length	PO:0020142 - stem internode , PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage , PO:0005421 - parenchyma , PO:0005005 - shoot internode , PO:0007089 - stem elongation stage , PO:0001083 - inflorescence development stage , PO:0009025 - vascular leaf 
2976	OSH3	OsH3, H3, HOS13	HOMEOBOX 3	Oryza sativa homeobox3, Homeobox protein knotted-1-like 7, Homeobox protein OSH3, Homeobox protein HOS13, Rice KNOX gene-3	HOMEOBOX PROTEIN OSH3		3	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. Os03g0727200. AB028882. Q948L5. PO:0020105; ligule ; PO:0009025; leaf.	 Vegetative organ - Shoot apical meristem(SAM)	Os03g0727200	LOC_Os03g51710.1, LOC_Os03g51710.2	GR:0061180			GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000335 - ligule shape, TO:0000492 - leaf shape	PO:0009025 - vascular leaf , PO:0020105 - ligule 
2977	OSH6	OsH6, HOS16	HOMEOBOX 6	Oryza sativa homeobox6, Rice KNOX gene-6, Homeobox protein knotted-1-like 1, Homeobox protein OSH6, Homeobox protein HOS16, Oryza sativa Homeobox 6	HOMEOBOX PROTEIN OSH6	osh6, osh6-1, osh6-2, osh6-3, osh6-4, osh6-5, osh6-6	1	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. Q9FP29. ortholog of maize Lg3 (Liguleless3). TO:0001066: number of metaxylem vessels. TO:0000739: shoot axis morphology trait. TO:0000985: root system morphology trait.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Root,  Vegetative organ - Culm	Os01g0302500	LOC_Os01g19694.1	GR:0061311			GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0010432 - bract development, GO:0090058 - metaxylem development	TO:0000492 - leaf shape, TO:0001009 - deep root number, TO:0002685 - crown root number, TO:0000552 - shoot dry weight, TO:0000470 - vascular tissue related trait	PO:0009025 - vascular leaf 
2978	OSH10	OsH10, H10, HB412	HOMEOBOX 10	Oryza sativa homeobox10, Homeobox protein knotted-1-like 4, Homeobox protein OSH10, Rice KNOX gene-10	HOMEOBOX PROTEIN OSH10		3	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. LOC_Os03g47016. Q75LX7. PO:0009025; leaf. AF003600.	 Vegetative organ - Shoot apical meristem(SAM)	Os03g0673000	LOC_Os03g47016.1	GR:0061312			GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009536 - plastid	TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
2979	OSH43	OsH43, H43	HOMEOBOX 43	Oryza sativa homeobox43, Homeobox protein knotted-1-like 8, Homeobox protein OSH43, Rice KNOX gene-43	HOMEOBOX PROTEIN OSH43		3	Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. AB028884. Q10ED2. PO:0009025; leaf.	 Vegetative organ - Shoot apical meristem(SAM)	Os03g0771500	LOC_Os03g56110.1, LOC_Os03g56110.2	GR:0061313			GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000492 - leaf shape	PO:0009025 - vascular leaf 
2981	MSP1	Msp1, OsMSP1, OsTMS15, TMS15	MULTIPLE SPOROCYTE 1	MULTIPLE SPOROCYTE1, multiple sporocyte, multiple sporogeneous cells-1, MULTIPLE SPOROCYTES1, Thermosensitive genic male sterility 15		msp1, msp1-4, msp1-6, tms5, ostms15, ostms15-cr	1	AB103395. AY885857-AY885886 and DQ374775-DQ374800  (O. sativa and other wild rice species, partial ads). MSP1 controls early sporogenic development, restricting the number of cells entering into male and female sporogeniesis and initiating anther wall formation in rice. Putative leucin-rich repeat protein kinase, Putative extra sporogenous cells. GRO:0007140; B-reproductive stage ; GRO:0007209; stamen stage ST0 ; GRO:0007213; stamen stage ST4 ; GRO:0007211; stamen stage ST1 ; GRO:0007210; stamen stage ST3 ; GRO:0007183; ovule stage OV3. a rice ortholog of Arabidopsis EMS1/EXS. orthologous to TPD1 (MAC1).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0917500	LOC_Os01g68870.2, LOC_Os01g68870.1	GR:0061178			GO:0006468 - protein amino acid phosphorylation, GO:0010480 - microsporocyte differentiation, GO:0048658 - tapetal layer development, GO:0010234 - tapetal cell fate specification, GO:0009555 - pollen development, GO:0009266 - response to temperature stimulus, GO:0009556 - microsporogenesis, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009554 - megasporogenesis, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004713 - protein tyrosine kinase activity, GO:0048653 - anther development, GO:0032940 - secretion by cell, GO:0016020 - membrane	TO:0000432 - temperature response trait, TO:0000218 - pollen abortion type, TO:0000437 - male sterility, TO:0000726 - microsporocyte number, TO:0000725 - megasporocyte number, TO:0000067 - genic male sterility-thermo sensitive, TO:0000355 - heterosis	PO:0000002 - anther wall , PO:0000431 - megasporocyte , PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0009037 - lemma , PO:0009029 - stamen , PO:0020020 - nucellus , PO:0020047 - microsporocyte , PO:0009038 - palea , PO:0020003 - plant ovule 
2982	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7	RETROTRANSPOSON 17	Retrotransposon17, Retrotransposon 17, Retrotransposon-17, retrotransposon Tos17, LTR retrotransposon Osr21				Tissue culture-induced activationi of Tos17 may be a useful tool for insertional mutagenesis and functional analysis of genes. D85876. AC087545: 81711-84269.  a tissue culture-activated copia retrotransposon.	 Biochemical character			GR:0061155			GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
2983	KARMA	Karma	RETROTRANSPOSON	retrotransposon, LINE-type retrotransposon Karma, non-LTR retrotransposable element Karma				A LINE-type retrotransposon.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
2984	GAMYB	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB, OsMYBGA, MYBGA, Os2R_MYB15, 2R_MYB15	GIBBERELLIN MYB GENE	homologue to the barley Myb-like transcription factor, Transcription factor GAMYB, Gibberellin myb gene, R2R3-MYB Transcription Factor 15	TRANSCRIPTION FACTOR GAMYB	gamyb-1, gamyb-2, gamyb-3, gamyb-4, gamyb-5, gamyb-10	1	A transcriptional regulator of gebberellin (GA)-dependent alpha-amylase expression in aleurone cells. OsGAMYB also is important for floral organ development and essential for pollen development.X98355. CF323240. A2WW87(indica). Q0JIC2(japonica). R2R3-MYB. KC611040-KC611052 (O. sativa and wild rice species, partial cds). an osa-miR159b target gene.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Character as QTL - Germination,  Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0812000	LOC_Os01g59660.3, LOC_Os01g59660.1, LOC_Os01g59660.2, LOC_Os01g59660.4	GR:0061305			GO:0046686 - response to cadmium ion, GO:0030154 - cell differentiation, GO:0009845 - seed germination, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0005737 - cytoplasm, GO:0007126 - meiosis, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0009908 - flower development, GO:0042742 - defense response to bacterium, GO:0048653 - anther development, GO:0009414 - response to water deprivation, GO:0010584 - pollen exine formation, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0002213 - defense response to insect, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0080006 - internode patterning	TO:0000531 - anther length, TO:0000187 - anther color, TO:0000492 - leaf shape, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000421 - pollen fertility, TO:0000430 - germination rate, TO:0000145 - internode length, TO:0000166 - gibberellic acid sensitivity, TO:0000074 - blast disease, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000437 - male sterility, TO:0000424 - brown planthopper resistance	PO:0001004 - anther development stage , PO:0007057 - 0 seed germination stage , PO:0009025 - vascular leaf , PO:0000003 - whole plant 
2985	PAIR1	Pair1, OsPAIR1	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1, Homologous pairing aberration in rice meiosis 1, Protein PAIR1, Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1	PROTEIN PAIR1	pair1	3	This gene plays essentioal role in establishment of homologous chromosome pairing in rice meiosis. During prophase I of the pair1 meiocyte, all the chromosomes become entangled to form a compact sphere adhered to a nucleolus, and homologous pairing failed. Coiled-coil protein. MiMe (Mitosis instead of Meiosis) mutants was generated by editing the OsOSD1 (Os02g37850), PAIR1 (Os03g01590), and OsREC8 (Os05g50410) genes. Q75RY2. AB158462. PO:0020047; microsporocyte ; PO:0000431; megasporocyte. GRO:0007212; stamen stage ST5 ; GRO:0007213; stamen stage ST4 ; GRO:0007179; ovule stage OV4 ; GRO:0007183; ovule stage OV3 ; GRO:0007147; 4.1-panicle initiation stage. KC626093-KC626127 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os03g0106300	LOC_Os03g01590.1, LOC_Os03g01590.2	GR:0100119			GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis, GO:0007133 - meiotic anaphase I, GO:0005634 - nucleus, GO:0007128 - meiotic prophase I, GO:0007134 - meiotic telophase I	TO:0000358 - female sterility, TO:0000729 - meiotic cell cycle trait, TO:0000437 - male sterility	PO:0000431 - megasporocyte , PO:0020047 - microsporocyte 
2986	RPA1	OsRPA1, OsRPA70b, RPA70b	REPLICATION PROTEIN A 1	replication protein A1, Replication protein A 70kDa subunit b, RPA70kDa subunit b	REPLICATION PROTEIN A 1		3	This gene encodes an ortholog of replication protein A1 (RPA1) in relation to deepwater response. This gene is expressed in the intercalary meristem of internode and its transcript level increases as a result of GA treatment and submergence.AF009179, AB111916. Q10Q08. up-regulated after fertilization (Abiko et al. 2013).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0214100	LOC_Os03g11540.1				GO:0010224 - response to UV-B, GO:0030912 - response to deep water, GO:0009739 - response to gibberellin stimulus, GO:0010332 - response to gamma radiation, GO:0006281 - DNA repair, GO:0009790 - embryonic development, GO:0003677 - DNA binding, GO:0006310 - DNA recombination, GO:0005662 - DNA replication factor A complex, GO:0006260 - DNA replication, GO:0046872 - metal ion binding	TO:0000161 - radiation response trait	
2987	RFL	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2, OsRFL, OsFL, OsAPO2, OsSSC	FLO-LFY HOMOLOG OF RICE	Rice LFY-like gene, Probable transcription factor FL, RICE FLORICAULA, ABERRANT PANICLE ORGANIZATION 2, RFL/ABERRANT PANICLE ORGANIZATION 2, SHORT and SOLID CULM, RICE FLORICAULA/LEAFY	FLO-LFY HOMOLOG OF RICE	apo2, ssc, apo2-1, apo2-2	4	AB005620. A homolog of FLORICAULA (FLO) of Antirrhinum and LEAFY (FLY) of Arabidopsis. the rice homologue of Ara- bidopsis LFY. RFL is not involved in floral initiation as FLO/FLY, but in panicle branching. A2XX39(indica), Q0JAI1(japonica). TO:0000784: inflorescence branch anatomy and morphology trait. GO:0090506: axillary shoot meristem initiation. KC626097-KC626107 (O. sativa and wild rice species, 3' UTR). AF065992, AF397034. GO:0010336: gibberellic acid homeostasis. GO:2000144: positive regulation of DNA-dependent transcription, initiation. TO:0020083: stem diameter. 	 Vegetative organ - Shoot apical meristem(SAM),  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Heading date	Os04g0598300	LOC_Os04g51000.1				GO:0009414 - response to water deprivation, GO:0045487 - gibberellin catabolic process, GO:0003677 - DNA binding, GO:0051302 - regulation of cell division, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0048573 - photoperiodism, flowering, GO:0005634 - nucleus, GO:0010073 - meristem maintenance, GO:0009742 - brassinosteroid mediated signaling, GO:0051510 - regulation of unidimensional cell growth, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0010223 - secondary shoot formation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0043067 - regulation of programmed cell death, GO:0007275 - multicellular organismal development	TO:0000329 - tillering ability, TO:0000621 - inflorescence development trait, TO:0000207 - plant height, TO:0000050 - inflorescence branching, TO:0000576 - stem length, TO:0000145 - internode length, TO:0002616 - flowering time, TO:0001035 - stem width, TO:0000547 - primary branch number, TO:0002677 - brassinosteroid sensitivity, TO:0000276 - drought tolerance, TO:0006032 - panicle size, TO:0002675 - gibberellic acid content, TO:0002759 - grain number	PO:0000034 - vascular system , PO:0000017 - vascular leaf primordium , PO:0006079 - shoot meristem , PO:0007089 - stem elongation stage , PO:0001083 - inflorescence development stage 
2988	PSK	OsPSK, PSK-alpha, PSK-beta	PHYTOSULFOKINE-ALPHA PRECURSOR	phytosulfokine, phytosulfokine-alpha, preprophytosulfokine, phytosulfokine precursor, Cell growth factor (Phytosulfokine), Phytosulfokines 1, Phytosulfokine-alpha, Phytosulfokine-a, Phytosulfokine-beta, Phytosulfokine-b	PHYTOSULFOKINE-ALPHA PRECURSOR		6	This gene codes a precursor of phytosulfokine-alpha, which strongly promotes proliferation of plant cells in culture. plant peptide growth factor, mitogenic peptide. AB026837, AB020505. A2YFB4(indica), Q0DAS9(japonica). D42693, D43399.	 Biochemical character	Os06g0633300	LOC_Os06g42680.1, LOC_Os06g42680.2	GR:0061486			GO:0008083 - growth factor activity, GO:0030154 - cell differentiation, GO:0009790 - embryonic development, GO:0005576 - extracellular region, GO:0007275 - multicellular organismal development		
2989	RAC1	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1	RAC/ROP-TYPE GTPASE 1	small GTP-binding protein 1, Rac-like GTP-binding protein 1, GTPase Rac homolog, Rice homolog of mammalian Rac-GTPase RAC1	RAC/ROP-TYPE GTPASE 1		1	This gene regulates cell death against blast disease infection, i.e. hyper sensitiveness. AB029508. Q9SSX0. PO:0009011; plant structure ; PO:0000003; whole plant. GO:2000377: regulation of reactive oxygen species metabolic process. KC611164-KC611172 (O. sativa and wild rice species, partial cds). Integrator of PTI (PAMP-triggered immunity) and ETI (effector-triggered immunity). GO:2000379: positive regulation of reactive oxygen species metabolic process. GO:1900150: regulation of defense response to fungus. TO:0000975: grain width. TO:0000845: collective phyllome structure morphology trait. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape	Os01g0229400	LOC_Os01g12900.3, LOC_Os01g12900.2, LOC_Os01g12900.1	GR:0061388			GO:0006952 - defense response, GO:0005525 - GTP binding, GO:0005737 - cytoplasm, GO:0006915 - apoptosis, GO:0002238 - response to molecule of fungal origin, GO:0019898 - extrinsic to membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0051302 - regulation of cell division, GO:0050832 - defense response to fungus, GO:0052567 - response to defense-related host reactive oxygen species production, GO:0005886 - plasma membrane, GO:0031347 - regulation of defense response	TO:0000112 - disease resistance, TO:0000590 - grain weight, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000396 - grain yield, TO:0000397 - grain size	PO:0009066 - anther , PO:0000003 - whole plant , PO:0009011 - plant structure 
2990	REB	OsZIP33, RISBZ2, OsbZIP33	ENDOSPERM BZIP	rice endosperm bZIP, bZIP transcription factor 33, rice seed b-Zipper 2, b-ZIP transcription factor 33			3	This gene encodes the rice transcription factor, REB (rice endosperm bZIP). D78609.	 Seed - Morphological traits - Endosperm	Os03g0796900	LOC_Os03g58250.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
2992	qRBR-1-1 (t) (rbr1a)	qRBR-1-1 (t) (rbr1a)	Pyricularia grisea resistance (QTL)-1-1(t)	Pyricularia grisea resistance (QTL)-1-1(t)			1	This QTL is resistant to the blast, P. grisea, races F1366 and V86013. This QTL is located on chromosome 1 flanked by markers C161 and R753.	 Tolerance and resistance - Disease resistance								
2993	qRBR-1-2 (t) (rbr1b)	qRBR-1-2 (t) (rbr1b)	Pyricularia grisea resistance (QTL)-1-2(t)	Pyricularia grisea resistance (QTL)-1-2(t)			1	This QTL is resistant to the blast, P. grisea, races F1366 and F1814. This QTL is located on chromosome 1 flanked by markers RM532 and RM259 or RM259 and RM243 for race F1366 and markers RM243 and RG173 for race F1814.	 Tolerance and resistance - Disease resistance								
2994	qRBR-1-3 (t) (rbr1c)	qRBR-1-3 (t) (rbr1c)	Pyricularia grisea resistance (QTL)-1-3(t)	Pyricularia grisea resistance (QTL)-1-3(t)			1	This QTL is resistant to the blast, P. grisea, races F1366 and V86013, being located on chromosome 1 flanked by markers G393 and R2201.	 Tolerance and resistance - Disease resistance								
2995	qRBR-1-4 (t) (rbr1d)	qRBR-1-4 (t) (rbr1d)	Pyricularia grisea resistance (QTL)-1-4(t)	Pyricularia grisea resistance (QTL)-1-4(t)			1	This QTL is resistant to the blast, P. grisea, races  F1366, F1814 and V86013. This QTL is located on chromosome 1 flanked by markers RM212 and C547 or C547 and C2340 for the race F1366, markers RM212 and C547 or C2340 and C86 for the race F1814, and markers C547 and C2340 for the race V86013.	 Tolerance and resistance - Disease resistance								
2996	qRBR-2 (t) (rbr2)	qRBR-2 (t) (rbr2)	Pyricularia grisea resistance (QTL)-2 (t)	Pyricularia grisea resistance (QTL)-2 (t)			2	This QTL is resistant to the blast, P. grisea, races F1366, F1814 and V86013, being located on chromosome 2 flanked by markers RM213 and RM208.	 Tolerance and resistance - Disease resistance								
2997	qRBR-3 (t) (rbr3)	qRBR-3 (t) (rbr3)	Pyricularia grisea resistance (QTL)-3 (t)	Pyricularia grisea resistance (QTL)-3 (t)			3	This QTL is resistant to the blast, P. grisea, race F1814, being located on chromosome 3 flanked by markers RZ403 and R19.	 Tolerance and resistance - Disease resistance								
2998	qRBR-7-1 (t) (rbr7a)	qRBR-7-1 (t) (rbr7a)	Pyricularia grisea resistance (QTL)-7-1 (t)	Pyricularia grisea resistance (QTL)-7-1 (t)			7	This QTL is resistant to the blast, P. grisea, race F1366, being located on chromosome 7 flanked by markers RG528 and RG128 or RG128 and C1023.	 Tolerance and resistance - Disease resistance								
2999	qRBR-7-2 (t) (rbr7b)	qRBR-7-2 (t) (rbr7b)	Pyricularia grisea resistance (QTL)-7-2 (t)	Pyricularia grisea resistance (QTL)-7-2 (t)			7	This QTL is resistant to the blast, P. grisea, race F1366, being located on chromosome 7 flanked by markers RM234 and R1789.	 Tolerance and resistance - Disease resistance								
3000	qRBR-8 (t) (rbr8)	qRBR-8 (t) (rbr8)	Pyricularia grisea resistance (QTL)-8(t)	Pyricularia grisea resistance (QTL)-8(t)			8	This QTL is resistant to the blast, P. grisea, races F1366 and V86013, being located on chromosome 8 flanked by markers RG33 and RM25 or RM25 and R1629 for race R1366, and markers RM25 and R1629 for race V86013.	 Tolerance and resistance - Disease resistance								
3001	qRBR-9-1 (t) (rbr9a)	qRBR-9-1 (t) (rbr9a)	Pyricularia grisea resistance (QTL)-9-1 (t)	Pyricularia grisea resistance (QTL)-9-1 (t)			9	This QTL is resistant to the blast, P. grisea, races F1366 and F1814, being located on chromosome 9 flanked by markers RM201 and C472.	 Tolerance and resistance - Disease resistance								
3002	qRBR-9-2 (t) (rbr9b)	qRBR-9-2 (t) (rbr9b)	Pyricularia grisea resistance (QTL)-9-2(t)	Pyricularia grisea resistance (QTL)-9-2(t)			9	This QTL is resistant to the blast, P. grisea, race F1814, being located on chromosome 9 flanked by markers RM257 and RM242.	 Tolerance and resistance - Disease resistance								
3003	qRBR-9-3 (t) (rbr9c)	qRBR-9-3 (t) (rbr9c)	Pyricularia grisea resistance (QTL)-9-3(t)	Pyricularia grisea resistance (QTL)-9-3(t)			9	This QTL is resistant to the blast, P. grisea, races F1366 and V86013, being located on chromosome 9 flanked by markers RG570 and RG667 for race F1366, and markers RM215 and R1952 for race V86013.	 Tolerance and resistance - Disease resistance								
3004	qRN-3 (t) (QRn3)	qRN-3 (t) (QRn3)	rhizome number (QTL)-3 (t)	rhizome number (QTL)-3 (t)			3	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 3 flanked by markers RM282 and RM5551.	 Vegetative organ - Culm								
3005	qRN-5 (t) (QRn5)	qRN-5 (t) (QRn5)	rhizome number (QTL)-5 (t)	rhizome number (QTL)-5 (t)			5	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 5 flanked by markers RM161 and RM274.	 Vegetative organ - Culm								
3006	qRN-10 (t) (QRn10)	qRN-10 (t) (QRn10)	rhizome number (QTL)-10 (t)	rhizome number (QTL)-10 (t)			10	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 10 flanked by markers RM271 and RM269.	 Vegetative organ - Culm								
3007	qRN-6 (t) (QRn6)	qRN-6 (t) (QRn6)	rhizome number (QTL)-6 (t)	rhizome number (QTL)-6 (t)			6	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 6 flanked by markers RM345 and OSR21.	 Vegetative organ - Culm								
3008	qRN-2 (t) (QRn2)	qRN-2 (t) (QRn2)	rhizome number (QTL)-2 (t)	rhizome number (QTL)-2 (t)			2	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 2 flanked by markers RM341 and RM327.	 Vegetative organ - Culm								
3009	qRN-7 (t) (QRn7)	qRN-7 (t) (QRn7)	rhizome number (QTL)-7 (t)	rhizome number (QTL)-7 (t)			7	This QTL derived from O. longistaminata, controls rhizome number, being located on chromosome 7 flanked by markers RM125 and RM180.	 Vegetative organ - Culm								
3010	qRL-1(t) (QRl1)	qRL-1(t) (QRl1)	rhizome length (QTL)-1(t)	rhizome length (QTL)-1(t)			1	This QTL derived from O. longistaminata, controls rhizome length, being located on chromosome 1 flanked by markers RM306 and RM237.	 Vegetative organ - Culm								
3011	qRL-6(t) (QRl6)	qRL-6(t) (QRl6)	rhizome length (QTL)-6(t)	rhizome length (QTL)-6(t)			6	This QTL derived from Oryza longistaminata, controls rhizome length, being located on chromosome 6 flanked by markers RM30 and RM7309.	 Vegetative organ - Culm								
3012	qRL-7(t) (QRl7)	qRL-7(t) (QRl7)	rhizome length (QTL)-7(t)	rhizome length (QTL)-7(t)			7	This QTL derived from Oryza longistaminata, controls rhizome length, being located on chromosome 7 flanked by markers RM336 and RM234.	 Vegetative organ - Culm								
3013	qRBD-2(t) (QRbd2)	qRBD-2(t) (QRbd2)	rhizome branching degree (QTL)-2(t)	rhizome branching degree (QTL)-2(t)			2	This QTL derived from Oryza longistaminata, controls rhizome branching degree, being located on chromosome 2 flanked by markers RM71 and RM300.	 Vegetative organ - Culm								
3014	SPA	spa	SMALL PANICLE	small panicle				Formation of primary brances of lowre part of panicle is suppressed.	 Reproductive organ - Panicle, Mode of branching						GO:0007275 - multicellular organismal development		
3015	RAFTIN1	OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1	RAFTIN1	rice raftin1, raftin1, BURP domain-containing protein 13, Protein RAFTIN 1, RAFTIN1protein	BURP DOMAIN-CONTAINING PROTEIN 13		8	This gene regulates the development of pollen.  RAC/ROP-TYPE GTPASE. Q7F8U7. KC610928-KC610940 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os08g0496800	LOC_Os08g38810.1, LOC_Os08g38810.2				GO:0009555 - pollen development, GO:0043668 - exine, GO:0016023 - cytoplasmic membrane-bounded vesicle		
3016	SHP1	shp1	SHOOT POSITION-1	shoot position1, shoot position-1				Shoot position in embryo is displaced to the apex of embryo compared with that of wild type.	 Seed - Morphological traits - Embryo						GO:0009887 - organ morphogenesis, GO:0009888 - tissue development		
3017	HOX1	Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38	HOMEOBOX GENE 1	rice homeobox gene 1, Homeobox-leucine zipper protein HOX1, Homeodomain transcription factor HOX1, HD-ZIP protein HOX1, homeodomain-leucine zipper transcription factor 38, OsHDZIP transcription factor 38	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX1		10	EF555521, X96681. Q40691(indica), Q7XC54(japonica).	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Other,  Tolerance and resistance - Stress tolerance	Os10g0561800	LOC_Os10g41230.1				GO:0009959 - negative gravitropism, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0048366 - leaf development, GO:0010252 - auxin homeostasis, GO:0010600 - regulation of auxin biosynthetic process, GO:0016563 - transcription activator activity	TO:0002693 - gravity response trait, TO:0002672 - auxin content, TO:0000567 - tiller angle, TO:0000655 - leaf development trait, TO:0006001 - salt tolerance	PO:0005020 - vascular bundle , PO:0020148 - shoot apical meristem , PO:0025127 - primordium , PO:0001050 - leaf development stage , PO:0025275 - procambium 
3022	GID2	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e	GIBBERELLIN-INSENSITIVE DWARF 2	gibberellin-insensitive dwarf2, GIBBERELLIN INSENSITIVE DWARF2, GA-insensitive dwarf 2, F-box protein GID2, Gibberellin-insensitive dwarf protein 2, Protein GIBBERELLIN INSENSITIVE DWARF2, G-box factor 14-3-3e protein	GIBBERELLIN-INSENSITIVE DWARF PROTEIN 2	gid2-1, gid2-2, gid2-3, gid2-5, gid2	2	This mutant shows a severe dwarf phenotype with wide leaf blades and dark green leaves, features typical of GA-related mutants such as d1 and d18. Sterile. The gid2 mutation is caused by the defect in GID2, i.e., null mutation. Q7XAK4. GRO:0007048; 04-stem elongation stage. CAB77673. D15430. AB100246. a putative meiosis-related gene.	 Tolerance and resistance - Lesion mimic,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os02g0580300	LOC_Os02g36974.6, LOC_Os02g36974.5, LOC_Os02g36974.4, LOC_Os02g36974.3, LOC_Os02g36974.2, LOC_Os02g36974.1	GR:0080024			GO:0007126 - meiosis, GO:0060548 - negative regulation of cell death, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0019005 - SCF ubiquitin ligase complex, GO:0010265 - SCF complex assembly, GO:0031348 - negative regulation of defense response, GO:0009615 - response to virus, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress	TO:0000063 - mimic response, TO:0000299 - leaf lamina color, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000370 - leaf width, TO:0000148 - viral disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height	PO:0020122 - inflorescence axis , PO:0009005 - root , PO:0020039 - leaf lamina , PO:0020104 - leaf sheath , PO:0009082 - spikelet floret , PO:0000037 - shoot apex 
3023	CDR1	cdr1, cdr1*	CELL DEATH AND RESISTANCE 1	cell death and resistance1				A lesion mimic mutant for resistance to the rice blast fungus. Many small brownish lesions uniformly spreading over the entire leaf surface appear and become visible around 20 days after sowing. PO:0009025; leaf.	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic			GR:0060112			GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000468 - leaf blast disease resistance, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
3024	CDR2	cdr2, cdr2*	CELL DEATH AND RESISTANCE 2	cell death and resistance2				A lesion mimic mutant for resistance to the rice blast fungus. Many small brownish lesions spreding over the entire leaf surface appear and become visible aroun 50 days after sowing. PO:0009025; leaf.	 Tolerance and resistance - Lesion mimic,  Vegetative organ - Leaf			GR:0060113			GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000468 - leaf blast disease resistance, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
3025	CDR3	Cdr3, Cdr3*	CELL DEATH AND RESISTANCE 3	Cell death and resistance3				A lesion mimic mutant for resistance to rice blast fungus. Dominant. Many small brownish lesions spreading over the entire leaf surface appear and become visible around 20 days after sowing. PO:0009025; leaf.	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic			GR:0060114			GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000468 - leaf blast disease resistance, TO:0000063 - mimic response	PO:0009025 - vascular leaf 
3026	ENOD40	OsENOD40	EARLY NODULIN	rice early nodulin	EARLY NODULIN			This gene isolated from cultivated rice, Oryza sativa is homologues to early nodulin gene, ENOD40 of legume that plays a pivotal role in the organogenesis of root nodules. The expression of OsENOD40 is confined to stems. AB024054.	 Vegetative organ - Root,  Biochemical character						GO:0009878 - nodule morphogenesis		
3027	OBENOD40	ObENOD40	RICE EARLY NODULIN	rice early nodulin	RICE EARLY NODULIN			This gene isolated from Oryza brachyantha, is homologous to ENOD40 of legumes that plays a pivotal role in the organogenesis of root nodules. AB024055.	 Vegetative organ - Root,  Biochemical character						GO:0009878 - nodule morphogenesis		
3028	SPK	CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23, CPK23, OsSPK	SEED-SPECIFIC PROTEIN KINASE	"seed-specific protein kinase, \"Calcium-dependent protein kinase, isoform 1\", Calcium-dependent protein kinase isoform 1, calcium-dependent protein kinase 23, endosperm-specific sucrose synthase protein kinase"	SEED-SPECIFIC PROTEIN KINASE	spk-1, spk-2	10	This gene encodes a calcium-dependent seed-specific protein kinase. The genomic region consists of SPK-A and SPK-B, both of them being located on different chromosomes (Chrom. 6 and Chrom. 10). EC=2.7.11.1 AC073166, AE017116, D13436. E07613. P53682. PO:0009089; endosperm ; PO:0009010; seed. GRO:0007046; 07-milk stage. KC610844-KC610855 (O. sativa and wild rice species, partial cds). OsCDPK23 (OsCPK23)  in Asano et al. 2005, Ray et al. 2007, Tanaka et al. 2006.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0539600	LOC_Os10g39420.1	GR:0080031			GO:0009409 - response to cold, GO:0006468 - protein amino acid phosphorylation, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0019252 - starch biosynthetic process, GO:0031225 - anchored to membrane, GO:0048316 - seed development, GO:0010857 - calcium-dependent protein kinase activity, GO:0005515 - protein binding	TO:0000328 - sucrose content, TO:0002658 - starch grain synthesis, TO:0000469 - days to maturity, TO:0000100 - shrunken endosperm, TO:0000718 - wrinkled seed, TO:0000303 - cold tolerance, TO:0000266 - chalky endosperm, TO:0000653 - seed development trait, TO:0000696 - starch content, TO:0000249 - leaf senescence, TO:0002653 - endosperm storage protein content	PO:0009010 - seed , PO:0007633 - endosperm development stage , PO:0009089 - endosperm 
3030	CDPK7	OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13	CALCIUM-DEPENDENT PROTEIN KINASE 7	calcium dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 7		3	This gene is a positive regulator commonly involved in the tolerance to cold and salt/drought stresses. P53684, AY158077, X81393, AF048691, AB078634. OsCDPK13 in Yang et al. 2003 and Kakar et al. 2015.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os03g0128700	LOC_Os03g03660.4, LOC_Os03g03660.3, LOC_Os03g03660.2, LOC_Os03g03660.1				GO:0009409 - response to cold, GO:0004672 - protein kinase activity, GO:0009609 - response to symbiotic bacterium, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0009751 - response to salicylic acid stimulus, GO:0004674 - protein serine/threonine kinase activity	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0006085 - root meristem , PO:0005029 - root primordium , PO:0000016 - lateral root primordium , PO:0007633 - endosperm development stage 
3031	NAS1	OsNAS1	NICOTIANAMINE SYNTHASE 1	rice nicotianamine synthase1, NA synthase gene 1, Nicotianamine synthase 1, S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 1	NICOTIANAMINE SYNTHASE 1		3	The nicotianamine is a crucial components of the iron acqusition apparatus of graminaeceous plant. AB046401. D24418. AB021746. EC=2.5.1.43 A2XFU5(indica). Q0DSH9(japonica). TO:0006049: iron concentration. TO:0020089: iron content trait. TO:0006053: zinc concentration. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0307300	LOC_Os03g19427.1	GR:0080047			GO:0046394 - carboxylic acid biosynthetic process, GO:0034224 - cellular response to zinc ion starvation, GO:0009609 - response to symbiotic bacterium, GO:0010106 - cellular response to iron ion starvation, GO:0006826 - iron ion transport, GO:0046688 - response to copper ion, GO:0030410 - nicotianamine synthase activity, GO:0009739 - response to gibberellin stimulus, GO:0008652 - cellular amino acid biosynthetic process, GO:0042594 - response to starvation, GO:0030418 - nicotianamine biosynthetic process, GO:0055072 - iron ion homeostasis, GO:0010040 - response to iron(II) ion, GO:0010039 - response to iron ion	TO:0000495 - chlorophyll content, TO:0000021 - copper sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	PO:0000071 - companion cell , PO:0000258 - root cortex , PO:0000272 - protoxylem , PO:0020121 - lateral root , PO:0009025 - vascular leaf , PO:0020124 - root stele , PO:0020123 - root cap , PO:0005020 - vascular bundle , PO:0000256 - root hair cell , PO:0006036 - root epidermis , PO:0006203 - pericycle , PO:0020104 - leaf sheath , PO:0004001 - bulliform cell , PO:0009005 - root 
3032	NAS2	OsNAS2, OsNAS1	NICOTIANAMINE SYNTHASE 2	rice nicotianamine synthase2, NA synthase gene 2, Nicotianamine synthase 2, S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 2, NA synthase 2	NICOTIANAMINE SYNTHASE 2		3	The nicotianamine is a crucial component of the iron acquisition apparatus of graminaceous plants. EC=2.5.1.43 A2XFU5(indica). Q10MI9(japonica). AU176507. OsNAS1 in Sanchez-Sanuy et al. 2019. TO:0006049: iron concentration. TO:0006053: zinc concentration. GO:1990641: response to iron ion starvation. GO:0071579: regulation of zinc ion transport. TO:0001072: inflorescence axis length.	 Vegetative organ - Culm,  Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os03g0307200	LOC_Os03g19420.2	GR:0080048			GO:0030418 - nicotianamine biosynthetic process, GO:0055072 - iron ion homeostasis, GO:0010039 - response to iron ion, GO:0016192 - vesicle-mediated transport, GO:0006826 - iron ion transport, GO:0009739 - response to gibberellin stimulus, GO:0046688 - response to copper ion, GO:0042594 - response to starvation, GO:0009609 - response to symbiotic bacterium, GO:0006829 - zinc ion transport, GO:0010106 - cellular response to iron ion starvation, GO:0030410 - nicotianamine synthase activity	TO:0000456 - spikelet number, TO:0000370 - leaf width, TO:0000590 - grain weight, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000269 - 100-seed weight, TO:0000440 - grain number per plant, TO:0000166 - gibberellic acid sensitivity, TO:0000021 - copper sensitivity, TO:0000396 - grain yield, TO:0000495 - chlorophyll content, TO:0000224 - iron sensitivity	PO:0020124 - root stele , PO:0009025 - vascular leaf , PO:0009010 - seed , PO:0009006 - shoot system , PO:0009005 - root , PO:0005020 - vascular bundle , PO:0000272 - protoxylem , PO:0006036 - root epidermis , PO:0006203 - pericycle , PO:0000258 - root cortex , PO:0005772 - exodermis , PO:0020121 - lateral root 
3035	PNH1	OsPNH1	PINHEAD 1	Oryza sativa pinhead1, PINHEAD1, ZLL/PNH homologous protein, Protein argonaute PNH1, Protein PINHEAD homolog 1, pinhead1, OsPINHEAD1	ZLL/PNH HOMOLOGOUS PROTEIN		6	This is a rice homologue of PINHEAD/ZWILLE (PNH/Zll) of Arabidopsis, which plays important roll in the formation of the shoot apical meristem (SAM) and in leaf adaxial cell specification. OsPNH1 is located on chromosome 6 between RFLP markers G122 and G1314A. AB081950. Q69VD5. GRO:0007139; A-vegetative stage ; GRO:0007190; panicle stage PA6.	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf	Os06g0597400	LOC_Os06g39640.1	GR:0080013			GO:0003743 - translation initiation factor activity, GO:0031047 - gene silencing by RNA, GO:0010073 - meristem maintenance, GO:0005737 - cytoplasm, GO:0019827 - stem cell maintenance, GO:0003676 - nucleic acid binding, GO:0048366 - leaf development	TO:0000207 - plant height, TO:0000472 - vascular bundle number, TO:0000492 - leaf shape, TO:0006017 - meristem identity	PO:0009015 - portion of vascular tissue , PO:0000225 - peripheral zone , PO:0004726 - adaxial side of leaf primordium , PO:0006023 - bundle sheath , PO:0000230 - inflorescence meristem , PO:0006018 - leaf adaxial epidermis , PO:0000036 - leaf vascular system , PO:0006019 - leaf abaxial epidermis 
3036	TERT	OsTERT	TELOMERASE REVERSE TRANSCRIPTASE	rice telomerase reverse transcriptase, Telomerase reverse transcriptase	TELOMERASE REVERSE TRANSCRIPTASE		12	EC=2.7.7.49 Q8LKW0.AF288216. KC611015-KC611027 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os12g0293100	LOC_Os12g19549.1, LOC_Os12g19549.2				GO:0003721 - telomeric template RNA reverse transcriptase activity, GO:0003677 - DNA binding, GO:0000781 - chromosome, telomeric region, GO:0005634 - nucleus, GO:0006278 - RNA-dependent DNA replication, GO:0005739 - mitochondrion, GO:0003723 - RNA binding		
3037	BRD1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1	BRASSINOSTEROID-DEFICIENT DWARF 1	brassinosteroid-dependent1, brassinosteroid-dependent 1, brassinosteroid-deficient dwarf1, brassinosteroid-deficient dwarf 1, Cytochrome P450 85A1, C6-oxidase, BR-6-oxidase, Dwarf protein, cytochrome P450 CYP85A4, brassinosteroid deficient1, BR-deficient dwarf1, BR-deficient dwarf 1, BR C-6 oxidase	CYTOCHROME P450 85A1	brd1, brd1-1, brd1-2, brd1-3	3	AB084385. Q8GSQ1. A dwarf due to defect in brassinosteroids (BRs) synthesis. This dwarf has characteristics as erect leaves, defects in skotomorhogenesis (dark-adapted morphogenesis), and the ability of exogenous brassinolide (BL) treatment to rescue the dwarf phenotype.Deficiency in this gene causes a dwarf due to brassinosteroid (BR) biosynthetic defect. 	 Character as QTL - Yield and productivity,  Seed - Morphological traits,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os03g0602300	LOC_Os03g40540.1	GR:0080017			GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0004497 - monooxygenase activity, GO:0007275 - multicellular organismal development, GO:0010268 - brassinosteroid homeostasis, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009647 - skotomorphogenesis, GO:0009637 - response to blue light, GO:0005506 - iron ion binding, GO:0060359 - response to ammonium ion, GO:0016020 - membrane, GO:0016132 - brassinosteroid biosynthetic process, GO:0009719 - response to endogenous stimulus, GO:0020037 - heme binding, GO:0022900 - electron transport chain, GO:0007165 - signal transduction, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0001578 - microtubule bundle formation, GO:0080113 - regulation of seed growth, GO:0055114 - oxidation reduction	TO:0000085 - leaf rolling, TO:0000206 - leaf angle, TO:0000172 - jasmonic acid sensitivity, TO:0000135 - leaf length, TO:0000642 - leaf sheath diameter, TO:0000227 - root length, TO:0000370 - leaf width, TO:0000159 - blue light sensitivity, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000492 - leaf shape, TO:0000391 - seed size, TO:0002676 - brassinosteroid content, TO:0002688 - leaf lamina joint bending, TO:0002677 - brassinosteroid sensitivity, TO:0000576 - stem length	PO:0001031 - 4 root elongation stage 
3039	qLT-8	qLT-8	luster (QTL)-8	luster (QTL)-8			8	This QTL controls a luster of cooked rice grain, one of the cooking quality of rice grain, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3040	qTD-6	qTD-6	tenderness (QTL)-6	tenderness (QTL)-6			6	This QTL controls tenderness of cooked rice grain, one of the eating quality of rice grain, being located on chromosome 6 in the vicinity of RFLP marker C688.	 Seed - Morphological traits - Endosperm								
3041	qTD-8	qTD-8	tenderness (QTL)-8	tenderness (QTL)-8			8	This QTL controls tenderness of cooked rice grain, one of the eating quality of rice grain, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3042	qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6)	qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6)	integrated value of organoleptic evaluation (QTL)-6-1(t)	integrated value of organoleptic evaluation (QTL)-6-1(t)			6	This QTL controls an integrated value of organoleptic evaluation, being located on chromosome 6 between RFLP marker XNpb209 and C688.	 Character as QTL - Grain quality								
3043	qIVOE-8	qIVOE-8	integrated value of organoleptic evaluation (QTL)-8	integrated value of organoleptic evaluation (QTL)-8			8	This QTL controls an integrated value of organoleptic evalustion, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3044	qAC-8	qAC-8	amylose content (QTL)-8	amylose content (QTL)-8			8	This QTL controls amylose content of rice grain, being located on chromosome 8 between RFLP markers XNpb41 and R727.	 Seed - Morphological traits - Endosperm								
3045	qRRE-1	qRRE-1	relative root elongation (Al-tolerance) (QTL)-1	relative root elongation (Al-tolerance) (QTL)-1			1	This QTL controls Al toxicity tolerance measured by relative root elongation (RRE) under Al stress to that of control. This QTL is located on chromosome 1 between markers X317 and X252.	 Tolerance and resistance - Stress tolerance								
3046	qRRE-5	qRRE-5	relative root elongation (Al-tolerance) (QTL)-5	relative root elongation (Al-tolerance) (QTL)-5			5	This QTL controls Al toxicity tolerance measured by relative root elongation under Al-stress (RRE) to that of control. This QTL is located on chromosome 5 between markers C246 and X297.	 Tolerance and resistance - Stress tolerance								
3047	qRRE-8	qRRE-8	relative root elongation (Al-tolerance) (QTL)-8	relative root elongation (Al-tolerance) (QTL)-8			8	This QTL controls Al toxicity tolerance measured by relative root elongation under Al stress (RRE) to that of control. This QTL is located on chromosome 8 between markers C166 and C1121.	 Tolerance and resistance - Stress tolerance								
3048	qRRE-9	qRRE-9	relative root elongation (Al-tolerance) (QTL)-9	relative root elongation (Al-tolerance) (QTL)-9			9	This QTL controls Al toxicity tolerance measured by relative root elongation (RRE) under Al stress to that of control. This QTL is located on chromosome 9 between markers R1751 and X13.	 Tolerance and resistance - Stress tolerance								
3049	qRRE-11	qRRE-11	relative root elongation (Al-tolerance) (QTL)-11	relative root elongation (Al-tolerance) (QTL)-11			11	This QTL controls Al toxicity tolerance measured by relative root elongation (RRE) under Al stress to that of control. This QTL is located on chromosome 11 between markers C1172 and G1465.	 Tolerance and resistance - Stress tolerance								
3050	qLEI-3 (qLEI 3)	qLEI-3 (qLEI 3)	lowest elongated internode (QTL)-3	lowest elongated internode (QTL)-3			3	This QTL controls the position of the lowest elongated internode in relation to floating ability.  This QTL is located on chromosome 3 between markers RM282 and XNpb144.	 Vegetative organ - Culm								
3051	qLEI-12 (qLEI 12)	qLEI-12 (qLEI 12)	lowest elongated internode (QTL)-12	lowest elongated internode (QTL)-12			12	This QTL controls the position of the lowest elongated internode in relation to floating ability, being located on chromosome 12 between markers RM5479 and C901.	 Vegetative organ - Culm								
3052	qRIE-1 (qRIE 1)	qRIE-1 (qRIE 1)	rate of internodal elongation (QTL)-1	rate of internodal elongation (QTL)-1			1	This QTL controls the rate of internodal elongation in relation to floating ability, being located on chromosome 1 between markers C86 and XNpb113.	 Vegetative organ - Culm								
3053	qRIE-12 (qRIE 12)	qRIE-12 (qRIE 12)	rate of internodal elongation (QTL)-12	rate of internodal elongation (QTL)-12			12	This QTL controls the rate of internodal elongation in relation to floating ability, being located on chromosome 12 between markers XNpb402 and RM7018.	 Vegetative organ - Culm								
3054	GRH5	Grh5	GREEN RICE LEAFHOPPER RESISTANCE 5	Green rice leafhopper resistance5, Green rice leafhopper resistance 5, Green rice leafhopper resistance-5			8	Grh5 introgressed from O. rufipogon, is resistant to rice green leafhopper, being located on the distal region in long arm of chromosome 8 between RFLP markers RM1615 and RM6845, and tightly linked to RM3754 and RM3761. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061303			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
3055	qGWL-6	qGWL-6	grade of watery lesions (QTL)-6	grade of watery lesions (QTL)-6			6	This QTL controls the grade of watery lesions in relation to ovicidal response to whitebacked and brown planthoppers. This QTL is located on the short arm of chromosome 6 between markers R1954 and L688.	 Tolerance and resistance - Insect resistance								
3056	qGWL-10	qGWL-10	grade of watery lesions (QTL) -10	grade of watery lesions (QTL) -10			10	This QTL controls the grade of watery lesion in relation to ovicidal response to whitebacked planthopper. This QTL is located on the long arm of chromosome 10 between markers C809 and G127.	 Tolerance and resistance - Insect resistance								
3057	qGWL-5	qGWL-5	grade of watery lesions (QTL)-5	grade of watery lesions (QTL)-5			5	This QTL controls the grade of watery lesions in relation to ovicidal response to brown planthopper. This QTL is located on the long arm of chromosome 5 between markers C1268 and R1553.	 Tolerance and resistance - Insect resistance								
3058	qEM-3	qEM-3	egg mortality (QTL)-3	egg mortality (QTL)-3			3	This QTL controls egg mortality in relation to ovicidal effect to whitebacked planthopper. This QTL is located on the long arm of chromosome 3 between markers G332 and R19,	 Tolerance and resistance - Insect resistance								
3059	qEM-6	qEM-6	egg mortality (QTL)-6	egg mortality (QTL)-6			6	This QTL controls egg mortality in relation to ovcidal response to whitebacked and brown planthoppers. This QTL is located on the short arm of chromosome 6 between markers R1954 and L688.	 Tolerance and resistance - Insect resistance								
3060	qEM-7-1	qEM-7-1	egg mortality (QTL)-7-1	egg mortality (QTL)-7-1			7	This QTL controls egg mortality in relation to ovicial response to whitebacked planthopper. This QTL is located on the short arm of chromosome 7 between markers C1057 and R565.	 Tolerance and resistance - Insect resistance								
3061	qEM-7-2	qEM-7-2	egg mortality (QTL)-7-2	egg mortality (QTL)-7-2			7	This QTL controls egg mortality in relation to ovicial response to whitebacked planthopper. This QTL is located on the long arm of chromosome 7 between markers C451 and R1357.	 Tolerance and resistance - Insect resistance								
3062	qEM-8	qEM-8	egg mortality (QTL)-8	egg mortality (QTL)-8			8	This QTL controls egg mortality in relation to ovicidal response to whitebacked planthopper. This QTL is located on the short arm of chromosome 8 between markers C166 and R902.	 Tolerance and resistance - Insect resistance								
3063	qEM-2	qEM-2	egg mortality (QTL)-2	egg mortality (QTL)-2			2	This QTL controls egg mortality in relation to ovicidal response to brown planthopper, being located on chromosome 2 between markers R712 and R1843.	 Tolerance and resistance - Insect resistance								
3065	AMT2;1	OsAMT2;1, AMT2-1, OsAMT2.1, AMT2.1	AMMONIUM TRANSPORTER 2;1	Ammonium transporter 2 member 1	AMMONIUM TRANSPORTER 2;1		5	ammonium tansporter. Q84KJ7. AB051864, AB083581.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0468700	LOC_Os05g39240.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0034059 - response to anoxia, GO:0008519 - ammonium transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015696 - ammonium transport		
3066	AMT3;1	OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2	AMMONIUM TRANSPORTER 3 MEMBER 1	Ammonium transporter 3 member 1	AMMONIUM TRANSPORTER 3 MEMBER 1		1	Q84KJ6. AB083582, AP003235. OsAMT3;1 is the rice ortholog of the Lotus and soybean mycorrhiza-specific NH4+ transporters LjAMT2;2 and GmAMT4;1, respectively (Perez-Tienda et al. 2014). OsAMT2;2 and OsAMT3;1 in Wang et al. 2012 and Yang et al. 2014.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0870300	LOC_Os01g64990.1, LOC_Os01g64990.2, LOC_Os01g65000.1				GO:0015696 - ammonium transport, GO:0034059 - response to anoxia, GO:0016021 - integral to membrane, GO:0046688 - response to copper ion, GO:0055085 - transmembrane transport, GO:0008519 - ammonium transmembrane transporter activity, GO:0009610 - response to symbiotic fungus	TO:0000021 - copper sensitivity	
3067	AMT4;1	OsAMT4, OsAMT4;1, AMT4-1	AMMONIUM TRANSPORTER 4;1	Putative ammonium transporter 4 member 1	AMMONIUM TRANSPORTER 4		3	ammonium transporter. Q10CV4. AC091811.	 Biochemical character	Os03g0749000	LOC_Os03g53780.1				GO:0008519 - ammonium transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
3068	RPOTP	OsRpo Tp, OsRpoTp, NEP, RpoTp, rpoTP2	RNA POLYMERASE	RNA polymerase, Nuclear-Encoded Plastid RNA Polymerase, T3/T7-like RNA polymerase	RNA POLYMERASE		6	This gene encodes phage-type RNA polymerase, being localized to plastids and mitocondria. OsRpo Tp expression occurs at an early stage of leaf development. AB120430. U34283, D24565, D23514. Y11599. rpoTP2 in Zhou et al. 2021.	 Biochemical character	Os06g0652000	LOC_Os06g44230.1				GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0006351 - transcription, DNA-dependent, GO:0006350 - transcription		
3069	TPC1	OsTPC1, Tpc1, OsCC1, OsCL1 pore	TWO-PORE CHANNEL 1	Two pore calcium channel protein 1, Two-pore channel 1, Voltage-dependent calcium channel protein TPC1	TWO-PORE CHANNEL 1		1	OsTPC1 functions as a Ca2+-permiable channel involved in the regulation of growth and development. Ca2+-permiable channel. Q5QM84.	 Vegetative organ - Culm,  Biochemical character	Os01g0678500	LOC_Os01g48680.1, LOC_Os01g48680.2	GR:0010807			GO:0016020 - membrane, GO:0005261 - cation channel activity, GO:0005216 - ion channel activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005739 - mitochondrion, GO:0032940 - secretion by cell, GO:0006812 - cation transport, GO:0005244 - voltage-gated ion channel activity, GO:0006816 - calcium ion transport, GO:0005509 - calcium ion binding, GO:0005262 - calcium channel activity, GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0005245 - voltage-gated calcium channel activity, GO:0006811 - ion transport, GO:0009626 - plant-type hypersensitive response	TO:0000207 - plant height	
3070	EIN2	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7	ETHYLENE-INSENSITIVE PROTEIN 2	Ethylene-insensitive protein 2, maohuzi7, maohuzi 7	ETHYLENE-INSENSITIVE PROTEIN 2 	ein2, mhz7-2/osein2, mhz7/osein2-1, osein2, mhz7, mhz7-1, mhz7-2, mhz7-3, mhz7-4, ein2-1, Osein2, Osein2-1, Osein2-2, mhz7/ Osein2	7	This gene is a positive component of the ethylene-signaling pathway in rice. ethylene signaling transducer. AY396568. Os07g0155600(IRGSP1) by RAP. GO:1901001: negative regulation of response to salt stress. TO:0001041: root yield.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Insect resistance	Os07g0155600	LOC_Os07g06130.3, LOC_Os07g06130.2, LOC_Os07g06130.1				GO:0009814 - defense response, incompatible interaction, GO:0009873 - ethylene mediated signaling pathway, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0010150 - leaf senescence, GO:0031349 - positive regulation of defense response, GO:0009737 - response to abscisic acid stimulus, GO:0052319 - regulation of phytoalexin biosynthetic process, GO:0051607 - defense response to virus, GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0002213 - defense response to insect, GO:0009723 - response to ethylene stimulus, GO:0048364 - root development	TO:0000615 - abscisic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000249 - leaf senescence, TO:0000429 - salt sensitivity, TO:0001007 - coleoptile length, TO:0000143 - relative biomass, TO:0000173 - ethylene sensitivity, TO:0000112 - disease resistance, TO:0000516 - relative root length, TO:0000227 - root length, TO:0000424 - brown planthopper resistance, TO:0000397 - grain size, TO:0000544 - mesocotyl length, TO:0000327 - biomass yield	
3071	NHX1	OsNHX1, OcNHX1, OgNHX1, OrNHX1, OpNHX1, ObNHX1	NA+/H+ ANTIPORTER	Na+/H+ antiporter, NHX-type antiporter 1, Sodium/hydrogen antiporter 1	NA+/H+ ANTIPORTER	nhx1	7	This gene encodes a vacuolar (Na+m K+)/H+ antiporter. Overexpression of OsNHX1 under high concentration of NaCl and KCl improves the salt tolerance. AB021878. KC610941-KC610951 (O. sativa and wild rice species, partial cds). GO:0090332: stomatal closure. GO:1990069: stomatal opening. TO: 0020095: stomatal process related trait. Oryza sativa subsp. Indica: BGIOSGA026347, Oryza rufipogon: ORUFI07G26490, Oryza meridionalis: OMERI07G22210, Oryza nivara: ONIVA07G25170, Oryza barthii: OBART07G25570, Oryza glumipatula: OGLUM07G25540, Oryza punctata: OPUNC07G23980, Oryza brachyantha: OB07G30930.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0666900	LOC_Os07g47100.3, LOC_Os07g47100.2, LOC_Os07g47100.1				GO:0016021 - integral to membrane, GO:0030104 - water homeostasis, GO:0010118 - stomatal movement, GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis, GO:0009642 - response to light intensity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0043182 - vacuolar sequestering of sodium ion, GO:0005773 - vacuole, GO:0006885 - regulation of pH, GO:0015385 - sodium:hydrogen antiporter activity	TO:0001017 - water use efficiency, TO:0000460 - light intensity sensitivity, TO:0001034 - relative plant height, TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance, TO:0000153 - relative yield, TO:0000143 - relative biomass, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009006 - shoot system 
3072	AOS1	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2	ALLENE OXIDE SYNTHASE 1	"allene oxide synthase1, \"Allene oxide synthase 1, chloroplastic\", Cytochrome P450 74A1, Hydroperoxide dehydrase 1, allene oxide synthase-1"	ALLENE OXIDE SYNTHASE 1	osaos1-1, osaos1-2	3	This gene encode allene oxide synthase (AOS), a key enzyme for the biosynthesis of jasmoric acid (JA). The transcrips of OsAOS1 is up-regulated by red and far-red light in seedling shoots. This photoregulation participates in the phytochrome-mediated inhibition of rice coleoptile growth. EC=4.2.1.92 Q7Y0C8. AB116527. KC609133-KC609144 (O. sativa and wild rice species, partial ads). OsAOS2 in Kobayashi et al. 2016. TO:0006054: arsenic content trait. GO:0071722: detoxification of arsenic-containing substance. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:1903840: response to arsenite(3-). TO:0020090: zinc content trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os03g0767000	LOC_Os03g55800.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009266 - response to temperature stimulus, GO:0051607 - defense response to virus, GO:0009536 - plastid, GO:0046685 - response to arsenic, GO:0031969 - chloroplast membrane, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0009651 - response to salt stress, GO:0009695 - jasmonic acid biosynthetic process, GO:0047987 - hydroperoxide dehydratase activity, GO:0004497 - monooxygenase activity, GO:0009611 - response to wounding, GO:0031408 - oxylipin biosynthetic process, GO:0002213 - defense response to insect	TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000432 - temperature response trait, TO:0000455 - seed set percent, TO:0020091 - manganese content, TO:0001034 - relative plant height, TO:0000636 - relative shoot dry weight, TO:0000644 - relative root dry weight, TO:0000516 - relative root length, TO:0000605 - hydrogen peroxide content, TO:0000403 - leaf-folder resistance, TO:0000424 - brown planthopper resistance, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0020142 - stem internode , PO:0020141 - stem node , PO:0009051 - spikelet , PO:0025034 - leaf 
3073	AOS4	OsAOS4, CYP74A4, OsHPL1, HPL1	ALLENE OXIDE SYNTHASE 4	allene oxide synthase4, Allene oxide synthase 4, Cytochrome P450 74A4, Hydroperoxide dehydrase 4, hydroperoxide lyase 1, hydroperoxide lyase	ALLENE OXIDE SYNTHASE 4		2	EC=4.2.1.92 Q6Z6K9. GO:1901370: response to glutathione.	 Tolerance and resistance - Insect resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0218800	LOC_Os02g12690.1				GO:0047987 - hydroperoxide dehydratase activity, GO:0009409 - response to cold, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0031408 - oxylipin biosynthetic process, GO:0009978 - allene oxide synthase activity, GO:0009941 - chloroplast envelope, GO:0009753 - response to jasmonic acid stimulus, GO:0010287 - plastoglobule, GO:0009620 - response to fungus, GO:0016829 - lyase activity, GO:0009611 - response to wounding, GO:0009535 - chloroplast thylakoid membrane, GO:0005739 - mitochondrion, GO:0002215 - defense response to nematode, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000303 - cold tolerance, TO:0000384 - nematode damage resistance	
3074	GRF1	OsGRF1	GROWTH-REGULATING FACTOR 1	growth-regulating factor1	GROWTH-REGULATING FACTOR 1	mOsGRF1	2	This gene encodes a transcriptional regulator and may be involved in regulating vegetative growth in rice. BK004856. GO:2000024: regulation of leaf development. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0776900	LOC_Os02g53690.1				GO:0009739 - response to gibberellin stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042127 - regulation of cell proliferation, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0050832 - defense response to fungus, GO:0009741 - response to brassinosteroid stimulus, GO:0016563 - transcription activator activity, GO:0048366 - leaf development, GO:0009411 - response to UV	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000592 - 1000-dehulled grain weight, TO:0000734 - grain length, TO:0000166 - gibberellic acid sensitivity, TO:0000397 - grain size, TO:0000160 - UV light sensitivity, TO:0002637 - leaf size, TO:0000492 - leaf shape, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0000017 - vascular leaf primordium , PO:0000037 - shoot apex , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020148 - shoot apical meristem 
3075	MADS2	OsMADS2, RMADS219, NMADS1, PI2, nmads1, DLN33, OsDLN33	MADS BOX GENE 2	MADS box gene2, MADS-box transcription factor 2, GLOBOSA(GLO)-like MADS-box gene-2, DLN repressor 33, DLN motif protein 33	MADS-BOX TRANSCRIPTION FACTOR 2		1	AF095645. JF312028, JF312030. Q40702. a rice PISTILLATA ortholog. PO:0009046; flower. PISTILLATA-like MADS box protein.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os01g0883100	LOC_Os01g66030.2, LOC_Os01g66030.1	GR:0061386			GO:0009908 - flower development, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding	TO:0000580 - cytoplasmic male sterility, TO:0000622 - flower development trait, TO:0000499 - flower anatomy and morphology trait	PO:0007615 - flower development stage , PO:0009046 - flower 
3076	MADS4	OsMADS4, PI1, DLN140, OsDLN140	MADS BOX GENE 4	MADS box gene4, MADS-box transcription factor 4, GLOBOSA(GLO)-like MADS-box gene-4, DLN repressor 140, DLN motif protein 140	MADS-BOX TRANSCRIPTION FACTOR 4		5	Q40703. PO:0009046; flower. a rice PI orthologue. JF312006, JF312008.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os05g0423400	LOC_Os05g34940.3, LOC_Os05g34940.2, LOC_Os05g34940.1	GR:0061387			GO:0010229 - inflorescence development, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009908 - flower development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0030154 - cell differentiation, GO:0043565 - sequence-specific DNA binding	TO:0000621 - inflorescence development trait, TO:0000622 - flower development trait, TO:0000499 - flower anatomy and morphology trait	PO:0001083 - inflorescence development stage , PO:0009046 - flower , PO:0007615 - flower development stage 
3077	MADS5	OsMADS5, FDRMADS2	MADS BOX GENE 5	MADS box gene5, MADS-box transcription factor 5	MADS-BOX TRANSCRIPTION FACTOR 5		6	A2Y9P0(indica), Q0DEB8(japonica). a SEP-like gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Other	Os06g0162800	LOC_Os06g06750.1				GO:0043565 - sequence-specific DNA binding, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000245 - pollen free, TO:0000373 - inflorescence anatomy and morphology trait, TO:0002616 - flowering time	PO:0001048 - palea development stage , PO:0001047 - lemma development stage , PO:0001049 - lodicule development stage 
3078	MFO1	OsMADS6, MADS6, OsMFO1	MOSAIC FLORAL ORGANS 1	MADS box gene6, AGL6-like MADS Box gene, mosaic floral organs 1	MADS-BOX TRANSCRIPTION FACTOR 6	mfo1-1, mfo1-2, osmads6, mfo1, Osmads6-1, Osmads6-2, Osmads6-5, mads6-1, mads6-5	2	Q6EU39. U78782. GQ496635, GQ496636, GQ496637 (wild rice species). MFO1 regulates floral organ identities and the establishment and determinacy of floral meristem. GO:1901959: positive regulation of cutin biosynthetic process. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os02g0682200 	LOC_Os02g45770.1				GO:0048658 - tapetal layer development, GO:0010093 - specification of floral organ identity, GO:0009555 - pollen development, GO:0048653 - anther development, GO:0003700 - transcription factor activity, GO:0005515 - protein binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048437 - floral organ development, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0010229 - inflorescence development, GO:0030154 - cell differentiation, GO:0009908 - flower development, GO:0009909 - regulation of flower development	TO:0000621 - inflorescence development trait, TO:0000437 - male sterility, TO:0000218 - pollen abortion type, TO:0000187 - anther color, TO:0000531 - anther length, TO:0000449 - grain yield per plant, TO:0006022 - floral organ development trait	PO:0009049 - inflorescence , PO:0001004 - anther development stage , PO:0001048 - palea development stage , PO:0001007 - pollen development stage , PO:0025477 - floral organ primordium , PO:0007615 - flower development stage , PO:0001083 - inflorescence development stage , PO:0020003 - plant ovule 
3079	MADS7	OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45	MADS BOX GENE 7	MADS box gene7, Protein AGAMOUS-like 6, MADS-box protein 45, MADS box gene45, MADS-box transcription factor 7, Protein AGAMOUS-like 6	MADS-BOX TRANSCRIPTION FACTOR 7		8	P0C5B0(indica), Q0J466(japonica). U78891. a SEP3-like gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Heading date	Os08g0531700	LOC_Os08g41950.2, LOC_Os08g41950.1				GO:0009555 - pollen development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009908 - flower development, GO:0010582 - floral meristem determinacy, GO:0030154 - cell differentiation, GO:0009266 - response to temperature stimulus, GO:0010208 - pollen wall assembly, GO:0048653 - anther development, GO:0043565 - sequence-specific DNA binding, GO:0010229 - inflorescence development, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048437 - floral organ development	TO:0006009 - lodicule anatomy and morphology trait, TO:0000215 - stamen anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0000437 - male sterility, TO:0006022 - floral organ development trait, TO:0006012 - carpel anatomy and morphology trait, TO:0000432 - temperature response trait, TO:0002616 - flowering time, TO:0000245 - pollen free, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0006023 - lodicule development trait	PO:0001007 - pollen development stage , PO:0001049 - lodicule development stage , PO:0001047 - lemma development stage , PO:0001083 - inflorescence development stage , PO:0025585 - floral organ formation stage , PO:0001048 - palea development stage , PO:0001004 - anther development stage 
3081	MADS13	OsMADS13, MAF1, RMADS206	MADS BOX GENE 13	MADS box gene13, MADS-box transcription factor 13	MADS-BOX TRANSCRIPTION FACTOR 13	osmads13-1, osmads13-2, osmads13-3, mads13-3	12	AF151693. Q2QW53. OsMADS13 is the rice ortholog of STK, FBP7, and FBP11. GRO:0007172; embryo stage EM6 ; GRO:0007173; embryo stage EM4 ; GRO:0007175; embryo stage EM8 ; GRO:0007169; embryo stage EM5. ortholog of Arabidopsis STK (SEEDSTICK). 	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Other	Os12g0207000	LOC_Os12g10540.1, LOC_Os12g10540.2, LOC_Os12g10540.3, LOC_Os12g10540.4, LOC_Os12g10540.5	GR:0080041			GO:0003700 - transcription factor activity, GO:0010229 - inflorescence development, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0048283 - indeterminate inflorescence morphogenesis, GO:0048481 - ovule development, GO:0005515 - protein binding, GO:0010582 - floral meristem determinacy, GO:0010622 - specification of ovule identity, GO:0005634 - nucleus	TO:0000223 - pistil anatomy and morphology trait, TO:0000358 - female sterility, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3082	RAP1B	MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10	RICE APETALA 1B 	MADS box gene14, MADS-box transcription factor 14, Protein APETALA1-like B, Protein AGAMOUS-like 10	MADS-BOX TRANSCRIPTION FACTOR 14	osmads14	3	AB041020. P0C5B1(indica), Q10CQ1(japonica). an ortholog of Arabidopsis AP1.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date,  Other	Os03g0752800	LOC_Os03g54160.2, LOC_Os03g54160.1				GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003006 - reproductive developmental process, GO:0010228 - vegetative to reproductive phase transition, GO:0009908 - flower development	TO:0000622 - flower development trait	PO:0007615 - flower development stage 
3085	COG1	OsMADS17, MADS17, NMADS3, RMADS213, nmads3	CONTROL OF GRAIN YIELD 1	MADS box gene17, MADS-box transcription factor 17	MADS-BOX TRANSCRIPTION FACTOR 17	osmads17	4	Q7XUN2. AF109153. AF095646. GQ496628, GQ496629, GQ496630 (wild rice species). the candidate gene for qGL4/qRLW4 (QTL for grain length and ratio of length-to-width). GO:1901959: positive regulation of cutin biosynthetic process. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os04g0580700	LOC_Os04g49150.1				GO:0006350 - transcription, GO:0048658 - tapetal layer development, GO:0009555 - pollen development, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0030912 - response to deep water, GO:0005515 - protein binding, GO:0043565 - sequence-specific DNA binding, GO:0048437 - floral organ development, GO:0048653 - anther development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000524 - submergence tolerance, TO:0000621 - inflorescence development trait, TO:0000396 - grain yield, TO:0000590 - grain weight, TO:0002759 - grain number, TO:0006022 - floral organ development trait, TO:0000449 - grain yield per plant, TO:0000218 - pollen abortion type, TO:0000531 - anther length, TO:0000187 - anther color, TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0001004 - anther development stage , PO:0025477 - floral organ primordium , PO:0025127 - primordium 
3086	MADS18	OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28	MADS BOX GENE 18	MADS box gene18, MADS-box transcription factor 18, MADS-box protein 2, MADS-box protein 28	MADS-BOX TRANSCRIPTION FACTOR 18	osmads18, osmads18-cas9-1, osmads18-cas9-7	7	A2YNI2(indica). Q0D4T4(japonica). GRO:0007048; 04-stem elongation stage ; GRO:0007165; leaf stage P5 ; GRO:0007059; 2.01-first leaf through coleoptile ; GRO:0007147; 4.1-panicle initiation stage. an ortholog of Arabidopsis AP1. PO:0030123: panicle inflorescence.	 Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Reproductive organ - panicle,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0605200	LOC_Os07g41370.2, LOC_Os07g41370.1	GR:0080025			GO:0009908 - flower development, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation, GO:0045449 - regulation of transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048830 - adventitious root development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0010228 - vegetative to reproductive phase transition, GO:0009737 - response to abscisic acid stimulus, GO:0007623 - circadian rhythm, GO:0006350 - transcription, GO:0010029 - regulation of seed germination, GO:0005515 - protein binding, GO:0010093 - specification of floral organ identity	TO:0000615 - abscisic acid sensitivity, TO:0000346 - tiller number, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000622 - flower development trait, TO:0000576 - stem length, TO:0000266 - chalky endosperm, TO:0000430 - germination rate, TO:0002616 - flowering time, TO:0000145 - internode length, TO:0000180 - spikelet fertility	PO:0009005 - root , PO:0007615 - flower development stage , PO:0007057 - 0 seed germination stage , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0009001 - fruit , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009025 - vascular leaf , PO:0000042 - shoot-borne root , PO:0006215 - leaf aerenchyma , PO:0009082 - spikelet floret , PO:0000229 - flower meristem 
3087	MADS20	OsMADS20	MADS BOX GENE 20	MADS box gene20, MADS-box transcription factor 20	MADS-BOX TRANSCRIPTION FACTOR 20		12	Q2QQA3. AY250075.	 Other,  Reproductive organ - panicle	Os12g0501700	LOC_Os12g31748.1, LOC_Os12g31748.2				GO:0010229 - inflorescence development, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3088	MADS21	OsMADS21, RMADS207	MADS BOX GENE 21	MADS box gene21, MADS-box transcription factor 21	TRANSCRIPTION FACTOR MADS21	osmads21	1	AY551913. Q8RU31.	 Other,  Reproductive organ - panicle	Os01g0886200	LOC_Os01g66290.1, LOC_Os01g66290.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0010229 - inflorescence development, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3089	MADS22	OsMADS22, RMD1, DLN68, OsDLN68	MADS BOX GENE 22	MADS box gene22, MADS-box transcription factor 22, STMADS11-like, DLN repressor 68, DLN motif protein 68	MADS-BOX TRANSCRIPTION FACTOR 22	osmads22-1, osmads22-2	2	Q9XJ66. AB003322. GRO:0007158; spikelet development ; GRO:0007147; 4.1-panicle initiation stage. SHORT VEGETATIVE PHASE (SVP) subfamily. PO:0006318; floret (sensu Poaceae).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Other	Os02g0761000	LOC_Os02g52340.1	GR:0080021			GO:0003677 - DNA binding, GO:0007275 - multicellular organismal development, GO:0043565 - sequence-specific DNA binding, GO:0009742 - brassinosteroid mediated signaling, GO:0003700 - transcription factor activity, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0009741 - response to brassinosteroid stimulus, GO:0009908 - flower development, GO:0005634 - nucleus, GO:0030154 - cell differentiation	TO:0000621 - inflorescence development trait, TO:0001000 - glume cover, TO:0000670 - floret number, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0002677 - brassinosteroid sensitivity, TO:0000485 - sterility related trait	PO:0006004 - upper glume , PO:0009038 - palea , PO:0000230 - inflorescence meristem , PO:0009082 - spikelet floret , PO:0009009 - plant embryo , PO:0009051 - spikelet , PO:0009036 - lodicule , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0004705 - stamen primordium , PO:0009037 - lemma 
3090	MADS23	OsMADS23, MADS-23	MADS BOX GENE 23	MADS box gene23, MADS-box transcription factor 23	MADS-BOX TRANSCRIPTION FACTOR 23	OsMADS23R, osmads23, osmads23-1, osmads23-2	8	Q6VAM4. one of the miR444 target genes. GO:2000280: regulation of root development. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development. GO:1902005: regulation of proline biosynthetic process. GO:0090333: regulation of stomatal closure. TO:0020095: stomatal process related trait.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Character as QTL - Germination,  Coloration - Chlorophyll,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Other	Os08g0431900	LOC_Os08g33488.1				GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006995 - cellular response to nitrogen starvation, GO:0009753 - response to jasmonic acid stimulus, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0048367 - shoot development, GO:0010029 - regulation of seed germination, GO:0010118 - stomatal movement, GO:0051607 - defense response to virus, GO:0006979 - response to oxidative stress, GO:0006561 - proline biosynthetic process, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0060359 - response to ammonium ion, GO:0010423 - negative regulation of brassinosteroid biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0048364 - root development, GO:0043565 - sequence-specific DNA binding	TO:0000605 - hydrogen peroxide content, TO:0000168 - abiotic stress trait, TO:0002676 - brassinosteroid content, TO:0002667 - abscisic acid content, TO:0006002 - proline content, TO:0000654 - shoot development trait, TO:0000148 - viral disease resistance, TO:0000227 - root length, TO:0002657 - oxidative stress, TO:0000495 - chlorophyll content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity	PO:0025527 - shoot system development stage , PO:0007520 - root development stage , PO:0009005 - root , PO:0007057 - 0 seed germination stage 
3091	MADS25	OsMADS25	MADS BOX GENE 25	MADS box gene25, MADS-box transcription factor 25	MADS-BOX TRANSCRIPTION FACTOR 25		4	Q84NC5. GO:0072593: reactive oxygen species metabolic process. GO:1902457: negative regulation of stomatal opening. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.	 Other,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os04g0304400	LOC_Os04g23910.1				GO:0043565 - sequence-specific DNA binding, GO:0006979 - response to oxidative stress, GO:0009737 - response to abscisic acid stimulus, GO:0010929 - positive regulation of auxin mediated signaling pathway, GO:0060359 - response to ammonium ion, GO:0010423 - negative regulation of brassinosteroid biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051512 - positive regulation of unidimensional cell growth, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0003700 - transcription factor activity, GO:0042542 - response to hydrogen peroxide	TO:0001013 - lateral root number, TO:0000615 - abscisic acid sensitivity, TO:0002676 - brassinosteroid content, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0006002 - proline content, TO:0000227 - root length, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0000605 - hydrogen peroxide content	PO:0007520 - root development stage , PO:0009005 - root 
3092	MADS26	OsMADS26, FDRMADS3, RMADS220	MADS BOX GENE 26	MADS box gene26, MADS-box transcription factor 26	MADS-BOX TRANSCRIPTION FACTOR 26		8	A2YQK9(indica), Q0J8G8(japonica). GO:0080148: negative regulation of response to water deprivation. GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Other,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance	Os08g0112700	LOC_Os08g02070.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3093	MADS27	OsMADS27, MADS-27a, OsSTA66, OsMADS27a	MADS BOX GENE 27	MADS box gene27, MADS-box transcription factor 27	MADS-BOX TRANSCRIPTION FACTOR 27	OsMADS27aR, osmads27, osmads27-1, osmads27-2	2	Q6EP49. CT835409. AY551923. one of the miR444 target genes. a mature anther-preferentially expressed gene. MADS-27a in Yang et al. 2014. OsMADS27a in Wang et al. 2016. ortholog of ZmMADS2. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development. TO:0020098: nitrate sensitivity. GO:1901002: positive regulation of response to salt stress. GO:0098771: inorganic ion homeostasis. GO:1902882: regulation of response to oxidative stress. TO:0000975: grain width.	 Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os02g0579600	LOC_Os02g36924.1				GO:0006350 - transcription, GO:0010167 - response to nitrate, GO:0043565 - sequence-specific DNA binding, GO:0016036 - cellular response to phosphate starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0006808 - regulation of nitrogen utilization, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048364 - root development, GO:0060359 - response to ammonium ion, GO:0005634 - nucleus, GO:0006979 - response to oxidative stress, GO:0055075 - potassium ion homeostasis, GO:0051607 - defense response to virus, GO:0009742 - brassinosteroid mediated signaling, GO:0010423 - negative regulation of brassinosteroid biosynthetic process, GO:0003700 - transcription factor activity	TO:0000609 - potassium content, TO:0000734 - grain length, TO:0000168 - abiotic stress trait, TO:0000269 - 100-seed weight, TO:0000399 - grain thickness, TO:0006001 - salt tolerance, TO:0000396 - grain yield, TO:0002676 - brassinosteroid content, TO:0002657 - oxidative stress, TO:0000608 - sodium content, TO:0000153 - relative yield, TO:0000449 - grain yield per plant, TO:0000346 - tiller number, TO:0000152 - panicle number, TO:0000440 - grain number per plant, TO:0000547 - primary branch number, TO:0000656 - root development trait, TO:0000148 - viral disease resistance, TO:0000227 - root length, TO:0000397 - grain size	PO:0009066 - anther , PO:0020124 - root stele , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root , PO:0007520 - root development stage 
3094	FST 	OsMADS29, MADS29, OsFST	FEMALE-STERILE 	MADS box gene29, MADS-box transcription factor 29	MADS-BOX TRANSCRIPTION FACTOR 29	fst	2	Q6H711. DQ004266. Gene Expression Omnibus database:GSE31893.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Endosperm,  Seed,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Other,  Reproductive organ - panicle	Os02g0170300	LOC_Os02g07430.1				GO:0003700 - transcription factor activity, GO:0009755 - hormone-mediated signaling, GO:0009960 - endosperm development, GO:0043565 - sequence-specific DNA binding, GO:0010229 - inflorescence development, GO:0009790 - embryonic development, GO:0048481 - ovule development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010252 - auxin homeostasis, GO:0009733 - response to auxin stimulus, GO:0010600 - regulation of auxin biosynthetic process, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0002661 - seed maturation, TO:0002672 - auxin content, TO:0000621 - inflorescence development trait, TO:0000163 - auxin sensitivity, TO:0000620 - embryo development trait, TO:0000358 - female sterility, TO:0000653 - seed development trait, TO:0000476 - growth hormone content	PO:0001083 - inflorescence development stage , PO:0007631 - plant embryo stage , PO:0007633 - endosperm development stage , PO:0007619 - ovule development stage , PO:0001002 - fruit development stage 
3095	MADS30	OsMADS30	MADS BOX GENE 30	MADS box gene30, MADS-box transcription factor 30	MADS-BOX TRANSCRIPTION FACTOR 30	osmads30-1, osmads30-2	6	Q655V4. LOC_Os06g45650.	 Other,  Tolerance and resistance - Stress tolerance	Os06g0667200	LOC_Os06g45650.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
3096	MADS31	OsMADS31	MADS BOX GENE 31	MADS box gene31, MADS-box transcription factor 31	MADS-BOX TRANSCRIPTION FACTOR 31		4	Q84NC2.	 Other	Os04g0614100	LOC_Os04g52410.1, LOC_Os04g52410.2				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
3097	CFO1	OsMADS32, MADS32, OsCFO1, CFO1/OsMADS32, TRI1, OsTRI1, OsMADS32/CFO, CFO, OsCFO	CHIMERIC FLORAL ORGANS 1	MADS box gene32, MADS-box transcription factor 32, triangular hull 1	MADS-BOX TRANSCRIPTION FACTOR 32	cfo1, tri1, cfo	1	Q8S151. HQ711850.	 Other,  Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0726400	LOC_Os01g52680.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0010093 - specification of floral organ identity, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0002629 - fruit structure trait, TO:0006012 - carpel anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0001083 - inflorescence development stage 
3098	MADS33	OsMADS33	MADS BOX GENE 33	MADS box gene33, MADS-box transcription factor 33	MADS-BOX TRANSCRIPTION FACTOR 33		12	Q2QW55.	 Other	Os12g0206800	LOC_Os12g10520.1, LOC_Os12g10520.2				GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity		
3099	PAP2	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19	PANICLE PHYTOMER2	MADS box gene34, MADS-box transcription factor 34, panicle phytomer 2	MADS-BOX TRANSCRIPTION FACTOR 34	pap2-1, los, osmads34, osmads34-1, osmads34-2	3	Q6Q9H6. TO:0000869: glume anatomy and morphology trait. OsMADS19 in Duan et al. 2019. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Inflorescence,  Other,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os03g0753100	LOC_Os03g54170.1				GO:0003006 - reproductive developmental process, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010229 - inflorescence development	TO:0002759 - grain number, TO:0000050 - inflorescence branching, TO:0000621 - inflorescence development trait, TO:0000358 - female sterility, TO:0002726 - sterile lemma shape	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
3100	MADS35	OsMADS35	MADS BOX GENE 35	MADS box gene35	MADS-BOX TRANSCRIPTION FACTOR 35				 Other						GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
3101	MADS36	OsMADS36	MADS BOX GENE 36	MADS box gene36	MADS-BOX TRANSCRIPTION FACTOR 36				 Other						GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription		
3102	MADS47	OsMADS47, OsMDP1, MDP, MDP1	MADS BOX GENE 47	MADS box gene47, MADS-domain-contaiing protein1, MADS-domain-containing protein 1, MADS-box transcription factor 47, MADS-DOMAIN-CONTAIING PROTEIN1, MADS domain protein 1	MADS-BOX TRANSCRIPTION FACTOR 47		3	AY345221, AC125471, AJ536158. Q5K4R0. PO:0003003; primary root elongation zone. GRO:0007047; 02-seedling ; GRO:0007235; 1.3-coleoptile emergence stage. SHORT VEGETATIVE PHASE (SVP) subfamily. TO:0000816: inflorescence bract anatomy and morphology trait. a downstream gene of OsJMJ706. the candidate gene for qTGW3.1 (QTL for thousand-grain weight).	 Reproductive organ - panicle,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0186600	LOC_Os03g08754.2, LOC_Os03g08754.1	GR:0080019			GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0009742 - brassinosteroid mediated signaling, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000227 - root length, TO:0000206 - leaf angle, TO:0000621 - inflorescence development trait, TO:0000401 - plant growth hormone sensitivity, TO:0000240 - sterile lemma length, TO:0006022 - floral organ development trait	PO:0009025 - vascular leaf , PO:0003003 - obsolete primary root elongation zone , PO:0020033 - coleoptile , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0020142 - stem internode , PO:0006012 - leaf collar , PO:0009005 - root , PO:0009010 - seed , PO:0009047 - stem 
3103	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3	MADS BOX GENE 50	MADS box gene50, MADS-box transcription factor 50, Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like, Protein AGAMOUS-like 20	MADS-BOX TRANSCRIPTION FACTOR 50	osmads50, osmads50-1, osmads50-2, mads50	3	This gene is a flowering activator. Q9XJ60. GO:2000280: regulation of root development. GO:2000028: regulation of photoperiodism, flowering.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - panicle,  Reproductive organ - Heading date,  Vegetative organ - Root,  Other	Os03g0122600	LOC_Os03g03100.1, LOC_Os03g03070.1				GO:0006350 - transcription, GO:0010229 - inflorescence development, GO:0048653 - anther development, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0048364 - root development, GO:0009266 - response to temperature stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009555 - pollen development, GO:0048573 - photoperiodism, flowering, GO:0043565 - sequence-specific DNA binding, GO:0030154 - cell differentiation, GO:0009908 - flower development, GO:0010208 - pollen wall assembly, GO:0005634 - nucleus	TO:0002616 - flowering time, TO:0002685 - crown root number, TO:0000437 - male sterility, TO:0000137 - days to heading, TO:0000656 - root development trait, TO:0000432 - temperature response trait, TO:0000621 - inflorescence development trait	PO:0007520 - root development stage , PO:0001007 - pollen development stage , PO:0001083 - inflorescence development stage , PO:0001004 - anther development stage 
3104	MADS55	OsMADS55, DLN163, OsDLN163	MADS BOX GENE 55	MADS box gene55, MADS-box transcription factor 55, DLN repressor 163, DLN motif protein 163	MADS-BOX TRANSCRIPTION FACTOR 55	Osmads55	6	Q69TG5. a SHORT VEGETATIVE PHASE-like floret meristem identity gene. SHORT VEGETATIVE PHASE (SVP) subfamily.	 Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Vegetative organ - Culm	Os06g0217300	LOC_Os06g11330.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000152 - panicle number, TO:0000207 - plant height, TO:0000590 - grain weight, TO:0002677 - brassinosteroid sensitivity, TO:0000621 - inflorescence development trait, TO:0000397 - grain size	PO:0001083 - inflorescence development stage 
3105	MADS56	OsMADS56, FDRMADS8, RMADS214	MADS BOX GENE 56	MADS box gene56, MADS-box transcription factor 56	MADS-BOX TRANSCRIPTION FACTOR 56		10	A2Z9Q7(indica), P0C5B2(japonica). floral repressor.	 Other,  Reproductive organ - Heading date,  Reproductive organ - panicle	Os10g0536100	LOC_Os10g39130.1, LOC_Os10g39130.2				GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription	TO:0002616 - flowering time, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
3106	MADS57	OsMADS57, MADS-57	MADS BOX GENE 57	MADS box gene57, MADS-box transcription factor 57	MADS-BOX TRANSCRIPTION FACTOR 57	osmads57, osmads57-1, OsMADS57R	2	Q6Z6W2. one of the miR444 target genes. TO:0020098: nitrate sensitivity. TO:0020094: nitrate content. TO:0020103: adventitious root length. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Vegetative organ - Leaf,  Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os02g0731200	LOC_Os02g49840.1, LOC_Os02g49840.2, LOC_Os02g49840.3, LOC_Os02g49840.4				GO:0006995 - cellular response to nitrogen starvation, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0060359 - response to ammonium ion, GO:0048364 - root development, GO:0051607 - defense response to virus, GO:0006350 - transcription, GO:0010423 - negative regulation of brassinosteroid biosynthetic process, GO:0005634 - nucleus, GO:0015706 - nitrate transport, GO:0010167 - response to nitrate, GO:0009742 - brassinosteroid mediated signaling, GO:0016036 - cellular response to phosphate starvation, GO:0009629 - response to gravity	TO:0000168 - abiotic stress trait, TO:0001007 - coleoptile length, TO:0000656 - root development trait, TO:0000145 - internode length, TO:0000227 - root length, TO:0002693 - gravity response trait, TO:0000206 - leaf angle, TO:0002676 - brassinosteroid content, TO:0000586 - seminal root length, TO:0000148 - viral disease resistance	PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage , PO:0009005 - root , PO:0020124 - root stele , PO:0005352 - xylem , PO:0000074 - parenchyma cell 
3108	HDAC1	OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702	CLASS-1 TYPE HISTONE DEACETYLASE 1	class-1 type histone deacetylase 1, histone deacetylase 1, histone deacetylase 702	CLASS-1 TYPE HISTONE DEACETYLASE 1		6	This gene controls histone deacetylase. This gene widely expressed in the leaves, roots, and callus cells. AF513382. Q7Y0Y8. RPD/HDA1 family.	 Vegetative organ - Root,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf	Os06g0583400	LOC_Os06g38470.1, LOC_Os06g38470.2, LOC_Os06g38470.3				GO:0009617 - response to bacterium, GO:0009409 - response to cold, GO:0003714 - transcription corepressor activity, GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0009734 - auxin mediated signaling pathway, GO:0006338 - chromatin remodeling, GO:0004407 - histone deacetylase activity	TO:0000370 - leaf width, TO:0000227 - root length, TO:0000339 - stem thickness, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0007520 - root development stage 
3109	HDAC2	OsHDAC2, HDA710, OsHDA710	CLASS-1 TYPE HISTONE DEACETYLASE 2	class-1 type histone deacetylase2, histone deacetylase 710	CLASS-1 TYPE HISTONE DEACETYLASE 2		2	This gene controls histone deacetylase. This gene is expressed in the root and callus cells, but not in the leaves. AF513383. Q6YV04. OsHDA710 in Hou et al. 2921. RPD/HDA1 family.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Other	Os02g0215200	LOC_Os02g12380.1, LOC_Os02g12380.2, LOC_Os02g12380.3				GO:0016575 - histone deacetylation, GO:0006325 - chromatin organization, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0004407 - histone deacetylase activity, GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006357 - regulation of transcription from RNA polymerase II promoter	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	PO:0009009 - plant embryo 
3110	HDAC3	OsHDAC3, HDA703, OsHDA703	CLASS-1 TYPE HISTONE DEACETYLASE 3	class-1 type histone deacetylase3, histone deacetylase 703	CLASS-1 TYPE HISTONE DEACETYLASE 3		2	This gene controls histone deacetylase and is expressed in the root and callus cells, but not in the leaves. AF513384. Q7Y0Y6. RPD/HDA1 family.	 Tolerance and resistance - Stress tolerance,  Other,  Biochemical character	Os02g0214900	LOC_Os02g12350.1				GO:0009651 - response to salt stress, GO:0004407 - histone deacetylase activity, GO:0009414 - response to water deprivation, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0006325 - chromatin organization, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0016575 - histone deacetylation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	PO:0009030 - carpel , PO:0009009 - plant embryo , PO:0009049 - inflorescence 
3111	DREB1A	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1A	Dehydration-responsive element-binding protein 1A, Protein DREB1A, Protein C-repeat-binding factor 3, ethylene response factor 24, APETALA2/ethylene-responsive element binding protein 114, C-REPEAT BINDING FACTOR 3	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1A		9	Expression of OsDREB1A is induced by cold. JN561151. A2Z389(indica), Q64MA1(japonica). AF300970. AY345233. AF494422. ObDREB1a is the orthologous gene in O. brachyantha. OsDREBL in Chen et al. 2003 and Lata, Prasad 2011 and Man et al. 2016.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Other	Os09g0522200	LOC_Os09g35030.1				GO:0009753 - response to jasmonic acid stimulus, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0009651 - response to salt stress, GO:0009845 - seed germination, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0010033 - response to organic substance, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009739 - response to gibberellin stimulus, GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009609 - response to symbiotic bacterium, GO:0005634 - nucleus	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000164 - stress trait	PO:0007022 - seed imbibition stage 
3112	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C, OsCBF1, CBF1	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B	Dehydration-responsive element-binding protein 1B, Protein DREB1B, ethylene response factor 31, APETALA2/ethylene-responsive element binding protein 169, C-REPEAT BINDING FACTOR 1	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B		9	Q3T5N4(japonica), Q8GUW4(indica). AF300972. AY785894. AY166833. AY319971. EF556551 (5' flanking region). The expression of OsDREB1B is induced by cold.  ObDREB1b is the orthologous gene in O. brachyantha. OsDREB1C in Tripathi et al. 2016. OsCBF1 in Jia et al. 2022. OsDREB2A in Shi et al. 2020.	 Seed - Physiological traits - Dormancy,  Other,  Tolerance and resistance - Stress tolerance	Os09g0522000	LOC_Os09g35010.1				GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009725 - response to hormone stimulus, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0009845 - seed germination, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress	TO:0000401 - plant growth hormone sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage 
3113	DREB2A	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2A	Dehydration-responsive element-binding protein 2A, Protein DREB2A, ethylene response factor 40, APETALA2/ethylene-responsive element binding protein 167	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2A		1	A2WL19 (indica), Q0JQF7 (japonica). AF300971. KF545561 to KF545569 (indica). AY064403, FN556368, FN556350, JQ341059, HM807364. KU159749 (Indica). GO:1901001: negative regulation of response to salt stress.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0165000	LOC_Os01g07120.2, LOC_Os01g07120.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010033 - response to organic substance, GO:0009635 - response to herbicide, GO:0009735 - response to cytokinin stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0000095 - osmotic response sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000058 - herbicide sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	
3114	DREB1C	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98, OsCBF2, CBF2	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1C	Dehydration-responsive element-binding protein 1C, Protein DREB1C, Protein C-repeat-binding factor 1, ethylene response factor 26, APETALA2/ethylene-responsive element binding protein 98, C-REPEAT BINDING FACTOR 1	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1C		6	A2Y8S6(indica), Q9LWV3(japonica). AY327040. OsCBF2 in Wan et al. 2023. TO:0000975: grain width. GO:0090548: response to nitrate starvation. TO:0020100: nitrate uptake. GO:0090408: phloem nitrate loading. TO:0020093: nitrogen content. TO:0000952: stem weight.	 Character as QTL - Plant growth activity,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Coloration - Others,  Seed - Morphological traits - Grain shape,  Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os06g0127100	LOC_Os06g03670.1				GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0015706 - nitrate transport, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009611 - response to wounding, GO:0006350 - transcription, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0042594 - response to starvation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0006995 - cellular response to nitrogen starvation, GO:0009413 - response to flooding, GO:0046686 - response to cadmium ion, GO:0030912 - response to deep water, GO:0009416 - response to light stimulus, GO:0019740 - nitrogen utilization, GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0009658 - chloroplast organization, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009915 - phloem loading, GO:0031667 - response to nutrient levels, GO:0042128 - nitrate assimilation	TO:0000153 - relative yield, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0000114 - flooding related trait, TO:0000612 - seed density, TO:0000447 - filled grain number, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000128 - harvest index, TO:0000316 - photosynthetic ability, TO:0000466 - carbon content, TO:0000598 - protein content, TO:0000162 - seed quality, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000522 - stomatal conductance, TO:0002715 - chloroplast development trait, TO:0000696 - starch content, TO:0000328 - sucrose content, TO:0006005 - fructose content, TO:0000227 - root length, TO:0002672 - auxin content, TO:0000357 - growth and development trait, TO:0001017 - water use efficiency, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000075 - light sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000137 - days to heading, TO:0000449 - grain yield per plant, TO:0000557 - secondary branch number	
3115	DREB1D	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	Dehydration-responsive element-binding protein 1D, Protein DREB1D, Protein C-repeat-binding factor 4, ethylene response factor 116, APETALA2/ethylene-responsive element binding protein 54	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D		6	Q6J1A5(japonica), Q6REU5(indica). AY785895. AY607691. AY345235. the Rice Ortholog of Arabidopsis CBF/DREB1. AF243384.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0165600	LOC_Os06g06970.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent		
3116	GNP1	GA20OX1, OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, OsGNP1	GRAIN NUMBER PER PANICLE 1	GIBBERELLIN 20-OXIDASE 1, rice GA 20-oxidase1, GA 20-oxidase1, Gibberellin 20 oxidase 1, Gibberellin C-20 oxidase 1, GA 20-oxidase 1, GA20 oxidase-1, GA 20-oxidase 1, GA20 oxidase, Gibberellin C-20 oxidase, Grain Number per Panicle1	GIBBERELLIN 20-OXIDASE 1	gnp1-D, GNP1-1 to GNP1-14	3	This gene catalyzes successive oxidations at the C-20 site of GAs (gibberellic acids), and produces substrates for GA 3-oxidase. This gene is located on chromosome 3 at 164.6cM. EC=1.14.11.- P93771. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. U50333. OsGA20ox2 in Wang et al. 2008. GO:0110126: phloem loading.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Biochemical character,  Seed - Physiological traits - Dormancy,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0856700	LOC_Os03g63970.1	GR:0061383			GO:0005506 - iron ion binding, GO:0010353 - response to trehalose stimulus, GO:0009651 - response to salt stress, GO:0048437 - floral organ development, GO:0009685 - gibberellin metabolic process, GO:0009409 - response to cold, GO:0010212 - response to ionizing radiation, GO:0055114 - oxidation reduction, GO:0016491 - oxidoreductase activity, GO:0006970 - response to osmotic stress, GO:0010336 - gibberellic acid homeostasis, GO:0009686 - gibberellin biosynthetic process, GO:0051707 - response to other organism	TO:0000734 - grain length, TO:0000447 - filled grain number, TO:0000590 - grain weight, TO:0006001 - salt tolerance, TO:0000396 - grain yield, TO:0000592 - 1000-dehulled grain weight, TO:0000152 - panicle number, TO:0000397 - grain size, TO:0000455 - seed set percent, TO:0000291 - carbohydrate content, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000095 - osmotic response sensitivity, TO:0002759 - grain number, TO:0000303 - cold tolerance, TO:0002675 - gibberellic acid content, TO:0000599 - enzyme activity, TO:0000161 - radiation response trait, TO:0000557 - secondary branch number, TO:0000357 - growth and development trait	PO:0007057 - 0 seed germination stage , PO:0009010 - seed , PO:0000230 - inflorescence meristem , PO:0007022 - seed imbibition stage , PO:0020148 - shoot apical meristem 
3118	QHB	OsQHB, OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9	QUIESCENT-CENTER-SPECIFIC-HOMEOBOX GENE	quiescent-center-specific-homeobox gene, WUSCHEL-related homeobox 9, Protein WOX5, Quiescent-specific homeobox protein	QUIESCENT-SPECIFIC HOMEOBOX PROTEIN	qhb, osqhb, osqhb-1, osqhb-2	1	This homeobox gene is responsible to the cells in the quiescent center of root apical meristem (RAM). Q8W0F1. AM234751. OsWOX5 in Nardmann and Werr 2006, Cheng et al. 2014, Guo et al. 2018, Hu et al. 2017. GO:1990110: callus formation. GO:2000023: regulation of lateral root development. TO:0000975: grain width. GO:2000377: regulation of reactive oxygen species metabolic process.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - panicle	Os01g0854500	LOC_Os01g63510.1				GO:0031099 - regeneration, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0045165 - cell fate commitment, GO:0010311 - lateral root formation, GO:0009414 - response to water deprivation, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048527 - lateral root development, GO:0043565 - sequence-specific DNA binding, GO:0010449 - root meristem growth, GO:0009723 - response to ethylene stimulus, GO:0006970 - response to osmotic stress, GO:0006350 - transcription, GO:0051301 - cell division, GO:0048507 - meristem development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009735 - response to cytokinin stimulus, GO:0003700 - transcription factor activity, GO:0007275 - multicellular organismal development, GO:0009790 - embryonic development, GO:0009651 - response to salt stress	TO:0000306 - root thickness, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000401 - plant growth hormone sensitivity, TO:0000040 - panicle length, TO:0000734 - grain length, TO:0000167 - cytokinin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000371 - yield trait, TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity, TO:0000397 - grain size, TO:0000620 - embryo development trait, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000382 - 1000-seed weight	PO:0008039 - stem base , PO:0000025 - root tip , PO:0020148 - shoot apical meristem , PO:0007511 - lateral root primordium formation stage , PO:0020149 - quiescent center , PO:0000016 - lateral root primordium , PO:0025261 - pericycle cell , PO:0007527 - 2 root meristem formation stage , PO:0007520 - root development stage , PO:0020147 - root apical meristem , PO:0005052 - plant callus , PO:0025480 - shoot-borne root primordium , PO:0020124 - root stele , PO:0005029 - root primordium 
3119	SCR	OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51	SCARECROW GENE	rice SCARECROW gene, SCARECROW, Protein SCARECROW 2, GRAS protein 51	PROTEIN SCARECROW 2	c-osscr2-1, c-osscr2-2, Osscr2, Osscr2-m3, Osscr2-m4, Osscr2-m8, Osscr2-m9, Osscr2-m10	12	OsSCR is involved not only in the asymmetric division of the cortex/endodermis progenitor cell in the root, but also in that during stomata and ligule formation by establishing the polarization of cytoplasm. AB180961. Q2QYF3(japonica), A2ZHL0(indica).  OsSCR2 in Cui et al. 2007, Wu et al. 2014, Wu et al. 2019, Hughes & Langdale 2022, Hughes et al. 2023. GRO:0007047; 02-seedling.GO:0090351: seedling development. TO:0000949: seedling growth and development trait.	 Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Vegetative organ - Root	Os12g0122000	LOC_Os12g02870.1	GR:0080035			GO:0010103 - stomatal complex morphogenesis, GO:0007275 - multicellular organismal development, GO:0005737 - cytoplasm, GO:0008356 - asymmetric cell division, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0010374 - stomatal complex development	TO:0000566 - stomatal frequency, TO:0000357 - growth and development trait	PO:0006085 - root meristem , PO:0000017 - vascular leaf primordium , PO:0000026 - primary root tip , PO:0000060 - root cortex-endodermis initial cell , PO:0005059 - root endodermis , PO:0009020 - meristem L1 , PO:0020105 - ligule 
3120	SHR1	OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR	SHORT ROOT GENE 1	rice SHORT  ROOT gene1, SHORT-ROOT 1, SHORTROOT1, SHORT-ROOT protein 1, GRAS protein 38, DLN repressor 189, DLN motif protein 189	PROTEIN SHORT-ROOT 1	c-osshr1-1, c-osshr1-2	7	OsSHR and OsSCR genes work co-operatively for formation of root endodermis and leaf stomata of rice. A2YN56(indica), Q8H2X8(japonica). ZmSHR2 (GRMZM2G172657) and ZmSHR2h (GRMZM2G019060) are orthologous to OsSHR1 (Os07g39820) (Schuler et al. 2018). GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Vegetative organ - Root	Os07g0586900	LOC_Os07g39820.1				GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0009738 - abscisic acid mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0050832 - defense response to fungus, GO:0048364 - root development, GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0010078 - maintenance of root meristem identity, GO:0010073 - meristem maintenance, GO:0010082 - regulation of root meristem growth, GO:0009737 - response to abscisic acid stimulus, GO:0010374 - stomatal complex development, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress	TO:0000227 - root length, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000566 - stomatal frequency, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002692 - root meristem development, TO:0000329 - tillering ability, TO:0000207 - plant height	PO:0009005 - root , PO:0006085 - root meristem , PO:0000258 - root cortex , PO:0007520 - root development stage 
3121	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1	HYBRID BREAKDOWN 2 	hybrid breakdown 2, rice casein Kinase I, casein kinase I, casein kinase I1, Low Temperature Growth 1, low-temperature response protein kinase 1, leaf starch excess and senescence 1	CASEIN KINASE I	OsCKI1-1, OsCKI1-2, ltg1, lses1, osckI1	2	The homozygotes show abnormal root development, including fewer lateral and adventitious roots, and shorten primary roots as a result of reduced cell elongation. AJ487966. PO:0009005; root ; PO:0020125; elongation zone. GRO:0007047; 02-seedling ; GRO:0007043; 01-germination ; GRO:0007059; 2.01-first leaf through coleoptile. The gene on chromosome 2, designated hybrid breakdown 2 (hbd2), was mapped between simple sequence repeat markers RM3515 and RM3730.  GO:0060918: auxin transport. NCBI SRA database with accession number PRJNA757395. ProteomeX- change database with accession number PXD030669.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os02g0622100	LOC_Os02g40860.1	GR:0080020			GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation, GO:0009741 - response to brassinosteroid stimulus, GO:0048364 - root development, GO:0010150 - leaf senescence, GO:0009738 - abscisic acid mediated signaling, GO:0005975 - carbohydrate metabolic process, GO:0005982 - starch metabolic process, GO:0042981 - regulation of apoptosis, GO:0005983 - starch catabolic process, GO:0000226 - microtubule cytoskeleton organization, GO:0009631 - cold acclimation, GO:0004713 - protein tyrosine kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0009409 - response to cold, GO:0009851 - auxin biosynthetic process, GO:0009850 - auxin metabolic process, GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development	TO:0002672 - auxin content, TO:0000206 - leaf angle, TO:0000249 - leaf senescence, TO:0000303 - cold tolerance, TO:0000326 - leaf color, TO:0000257 - root branching, TO:0000227 - root length, TO:0000605 - hydrogen peroxide content, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000696 - starch content, TO:0000084 - root number, TO:0000656 - root development trait, TO:0000495 - chlorophyll content	PO:0009005 - root , PO:0020125 - elongation zone , PO:0001054 - 4 leaf senescence stage 
3122	NAS3	OsNAS3	NICOTIANAMINE SYNTHASE 3	rice nicotianamine synthase3, NA synthase gene 3, Nicotianamine synthase 3, S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 3	NICOTIANAMINE SYNTHASE 3	osnas3-1	7	Nicotianamine synthase is a critical component in Fe acquisition in graminaceous plants. Nicotianamine and nicotianamine synthase play an important role in long-distance trasport of Fe in rice plants. EC=2.5.1.43. A2YQ58(indcica). Q0D3F2(japonica). TO:0006049: iron concentration. TO:0006053: zinc concentration. TO:0006052: copper concentration. GO:0120127: response to zinc ion starvation . GO:1990641: response to iron ion starvation. Candidate gene for qCo7.1 and qZn7.2 (QTL for Zn and Co concentrations). PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0689600	LOC_Os07g48980.1	GR:0080049			GO:0046688 - response to copper ion, GO:0010039 - response to iron ion, GO:0030410 - nicotianamine synthase activity, GO:0010040 - response to iron(II) ion, GO:0030418 - nicotianamine biosynthetic process, GO:0010043 - response to zinc ion, GO:0007623 - circadian rhythm, GO:0010045 - response to nickel ion, GO:0006826 - iron ion transport	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	PO:0006203 - pericycle , PO:0009025 - vascular leaf , PO:0009051 - spikelet , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0020031 - radicle , PO:0007057 - 0 seed germination stage , PO:0009010 - seed , PO:0009006 - shoot system , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0000071 - companion cell , PO:0000293 - guard cell , PO:0009005 - root , PO:0020032 - plumule 
3123	HAP3A	OsHAP3A, OsNF-YB-2, NFYB2, NF-YB2	HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEX	rice HAP3A, Nuclear transcription factor Y subunit B-2, NUCLEAR FACTOR-Y subunit B2, NUCLEAR FACTOR-Y subunit NF-YB2, Transcriptional activator HAP3A, NF-YB subunit 2, NF-YB family 2	HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEX		1	This gene regulates chloroplast biogenesis. AB095438, AK108142. NF-YB, CBF-A. Q5QMG3.	 Other,  Vegetative organ - Leaf	Os01g0834400	LOC_Os01g61810.1, LOC_Os01g61810.2				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait	
3124	HAP3B	OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C	HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX	rice HAP3B, Nuclear transcription factor Y subunit B-3, Transcriptional activator HAP3B, NUCLEAR FACTOR-Y subunit B4, NUCLEAR FACTOR-Y subunit NF-YB4, NF-YB subunit 4, NF-YB family 4	HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX		5	This gene regulates chloroplast biogenesis. AB095439. NF-YB, CBF-A. Q60EQ4. LOC_Os05g49780. NF-YB4 (HAP3C) in Petroni et al. 2012 and Yang et al. 2017. OsHAP3C in Li et al. 2016.	 Other,  Vegetative organ - Leaf	Os05g0573500	LOC_Os05g49780.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009658 - chloroplast organization, GO:0043565 - sequence-specific DNA binding	TO:0002715 - chloroplast development trait	
3125	HAP3C	OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B	HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX	rice HAP3C, Nuclear transcription factor Y subunit B-4, Transcriptional activator HAP3C, NUCLEAR FACTOR-Y subunit B3, NUCLEAR FACTOR-Y subunit NF-YB3, NF-YB subunit 3, NF-YB family 3	HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX		5	This gene regulates chloroplast biogenesis. AB095440. NF-YB, CBF-A. Q65XK1. LOC_Os05g38820. NF-YB3 (HAP3B) in Petroni et al. 2012 and Yang et al. 2017. OsHAP3B in Li et al. 2016.	 Other,  Vegetative organ - Leaf	Os05g0463800	LOC_Os05g38820.4				GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus		
3126	YSL2	OsYSL2, Os-YSL2, OsYs6	YELLOW STRIP-LIKE GENE 2	rice YSL (yellow stripe-like) gene2, Metal-nicotianamine transporter YSL2, Protein YELLOW STRIPE LIKE 2, ferrous Fe- and Mn-NA transporter OsYSL2, yellow stripe 1-like transporter 2	METAL-NICOTIANAMINE TRANSPORTER YSL2		2	This gene encodes a rice metal-NA (nicotianamine) transporter that is responsible for the phloem transport of Fe and Mn and the translocation of Fe and Mn into the grain. yellow stripe 1-like. YS1-like metal-nicotianamine transporter. IRON(II)-NICOTIANAMINE ACID TRANSPORTER. Q6H3Z6. AB126253, AB164646. CI446246. D42870, BE228381, BE230357. TO:0006049: iron concentration. TO:0020089: iron content trait. TO:0006053: zinc concentration. Fe(III)-MAs (mugineic acid family phytosiderophores)/Fe(II)-NA (nicotianamine) transporter.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0649900	LOC_Os02g43370.2, LOC_Os02g43370.1	GR:0080050			GO:0009739 - response to gibberellin stimulus, GO:0005381 - iron ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006826 - iron ion transport, GO:0046873 - metal ion transmembrane transporter activity, GO:0055072 - iron ion homeostasis, GO:0010106 - cellular response to iron ion starvation, GO:0010039 - response to iron ion, GO:0005506 - iron ion binding, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0030001 - metal ion transport	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0000071 - companion cell , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0005020 - vascular bundle , PO:0005417 - phloem , PO:0009051 - spikelet 
3127	CPS1	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4, TPS4, TPS29, OsTPS29, OsCPS1-L, OsCPS1-S	ENT-COPALYL DIPHOSPHATE SYNTHASE 1	"rice ent-copalyl diphosphate (CDP) synthase1, ent-copalyl diphosphate synthase 1, \"Ent-copalyl diphosphate synthase 1, chloroplastic\", Ent-CDP synthase 1, terpene synthase 4"	ENT-COPALYL DIPHOSPHATE SYNTHASE 1	oscps1-1, oscps1-2, cps1, Os cps1-1, cps1-1, cps1-2	2	This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). This gene is located on chromosome 2 at 2.49cM. EC=5.5.1.13 Ent-kaurene synthase A. AB126932. Q6ET36(japonica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. EF577637-EF577641 (wild rice species). DQ901860-DQ901889 (wild rice species). TPS29 in Sun et al. 2022. a candidate gene for qSL2 (QTL for shoot length on chromosome 2).	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os02g0278700	LOC_Os02g17780.1	GR:0020064			GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0009739 - response to gibberellin stimulus, GO:0008152 - metabolic process, GO:0009507 - chloroplast, GO:0016829 - lyase activity, GO:0009686 - gibberellin biosynthetic process, GO:0009905 - ent-copalyl diphosphate synthase activity, GO:0000287 - magnesium ion binding, GO:0009536 - plastid, GO:0009651 - response to salt stress, GO:0009685 - gibberellin metabolic process	TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000599 - enzyme activity, TO:0000166 - gibberellic acid sensitivity	
3128	CPS2	OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2, TPS13, OsTPS13	ENT-COPALYL DIPHOSPHATE SYNTHASE 2	rice ent-copalyl diphosphate (CDP) synthase2, ent-copalyl diphosphate synthase 2, Ent-CDP synthase 2, ent-copalyl diphosphate synthase like 1, cyclase2, cyclase 2, ent-CDP synthase, terpene synthase 7	ENT-COPALYL DIPHOSPHATE SYNTHASE 2		2	Q6Z5I0(japonica). Q5MQ85(indica). AY602991. AB066271. This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). This gene is located on chromosome 2 at 86cM. EC=5.5.1.13 Ent-kaurene synthase A. GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. This gene encodes ent-CDP (copalyl diphospate) synthase, which is responsible for the biosynthesis of oryzalexins A-F and phytocassanes A-E. TPS13 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os02g0571100	LOC_Os02g36210.1	GR:0020065			GO:0052315 - phytoalexin biosynthetic process, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0006952 - defense response, GO:0002238 - response to molecule of fungal origin, GO:0009975 - cyclase activity, GO:0050832 - defense response to fungus, GO:0009685 - gibberellin metabolic process, GO:0009536 - plastid, GO:0002213 - defense response to insect, GO:0008152 - metabolic process, GO:0009411 - response to UV, GO:0010039 - response to iron ion, GO:0002215 - defense response to nematode, GO:0042742 - defense response to bacterium, GO:0009905 - ent-copalyl diphosphate synthase activity, GO:0005739 - mitochondrion, GO:0016829 - lyase activity, GO:0000287 - magnesium ion binding	TO:0000160 - UV light sensitivity, TO:0000224 - iron sensitivity, TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance, TO:0000175 - bacterial blight disease resistance, TO:0000384 - nematode damage resistance, TO:0000074 - blast disease, TO:0000357 - growth and development trait, TO:0000599 - enzyme activity	
3129	CPS3	OsCPS3	ENT-COPALYL DIPHOSPHATE 3	rice ent-copalyl diphosphate (CDP) synthase3, ent-copalyl diphosphate (CDP) synthase 3, ent-copalyl diphosphate synthase 3	ENT-COPALYL DIPHOSPHATE 3		9	This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). It is located on chromosome 9 at 26.7cM. AP005767.	 Biochemical character	Os09g0319800	LOC_Os09g15050.1	GR:0101306			GO:0009685 - gibberellin metabolic process, GO:0000287 - magnesium ion binding, GO:0009536 - plastid, GO:0016829 - lyase activity, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0009905 - ent-copalyl diphosphate synthase activity		
3130	CPS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4, TPS11, OsTPS11	ENT-COPALYL DIPHOSPHATE SYNTHASE 4	rice ent-copalyl diphosphate (CDP) synthase4, ent-copalyl diphosphate synthase 4, ent-copalyl diphosphate synthase like 3, syn-copalyl diphosphate synthase, syn-copalyl diphosphate synthase, cyclase1, cyclase 1, syn-CDP synthase, terpene synthase 15	ENT-COPALYL DIPHOSPHATE SYNTHASE 4	cps4-tos	4	Q0JF02. Q6E7D7. AY530101. AB066270. PDB ID: 8KBW. This gene encodes one of the GA metabolic enzymes; ent-copalyl diphosphate synthase (CPS). It is located on chromosome 4 at 14.3cM. EC=5.5.1.14 Syn-copalyl diphosphate synthase, Syn-CPP synthase, OsCPSsyn. GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. momilactone biosynthetic pathway. GO:1900425: negative regulation of defense response to bacterium. TPS11 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os04g0178300	LOC_Os04g09900.3, LOC_Os04g09900.2, LOC_Os04g09900.1	GR:0020066			GO:0006952 - defense response, GO:0009536 - plastid, GO:0016829 - lyase activity, GO:0051498 - syn-copalyl diphosphate synthase activity, GO:0002238 - response to molecule of fungal origin, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009628 - response to abiotic stimulus, GO:0009411 - response to UV, GO:0008152 - metabolic process, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0009975 - cyclase activity, GO:0009685 - gibberellin metabolic process, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009609 - response to symbiotic bacterium, GO:0042742 - defense response to bacterium, GO:0010039 - response to iron ion, GO:0000287 - magnesium ion binding	TO:0000624 - allelopathic effect, TO:0002675 - gibberellic acid content, TO:0000599 - enzyme activity, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000224 - iron sensitivity, TO:0002671 - momilactone B content, TO:0000168 - abiotic stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000357 - growth and development trait, TO:0002670 - momilactone A content, TO:0000112 - disease resistance, TO:0000207 - plant height, TO:0000160 - UV light sensitivity, TO:0000439 - fungal disease resistance	PO:0009005 - root 
3131	KS1	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26, TPS6, OsTPS6	ENT-KAURENE SYNTHASE 1	"rice ent-kaurene synthase1, Ent-kaurene synthase 1, \"Ent-kaur-16-ene synthase, chloroplastic\", Kaurene synthase 1, Ent-kaurene synthase B, ent-kaurene synthase I, terpene synthase 26"	ENT-KAURENE SYNTHASE 1	osks1-1, osks1-2, osck1-3, osks1, ks1, ks1-1, ks1-2	4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 104cM linked with OsKS2 and OsKS3. EC=4.2.3.19. Q0JA82. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY347876, AY347877, AY347878. EF577651-EF577655 (wild rice species). osks1A mutation is solely responsible for the severe dwarfism (Margis-Pinheiro et al. 2005). GU727062-GU727081 (wild rice species). FJ811084-FJ811124 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901919-DQ901953 (wild rice species). EF069714-EF069781 (O. sativa and wild rice species). TPS6 in Sun et al. 2022.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character	Os04g0611800	LOC_Os04g52230.1	GR:0020067			GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009899 - ent-kaurene synthase activity, GO:0009686 - gibberellin biosynthetic process, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0008152 - metabolic process, GO:0000287 - magnesium ion binding, GO:0005739 - mitochondrion, GO:0009685 - gibberellin metabolic process	TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000166 - gibberellic acid sensitivity, TO:0000599 - enzyme activity, TO:0002675 - gibberellic acid content	
3132	KS2	OsKS2, KSL2, OsKSL2, OsTPS27, TPS27, TPS2, OsTPS2	ENT-KAURENE SYNTHASE 2	rice ent-kaurene synthase2, Ent-kaurene synthase 2, Ent-kaurene synthase like-2, Ent-kaurene synthase-like 2, terpene synthase 27	ENT-KAURENE SYNTHASE 2	osks2	4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 104cM linked with OsKS1 and OsKS3. EC=4.2.3.-  Q0JA81. DQ823350. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. A point mutation in OsKS2 cause a severe dwarf phenotype (Ji et al. 2013). LC033788. TPS2 in Sun et al. 2022.	 Vegetative organ - Culm,  Biochemical character	Os04g0612000	LOC_Os04g52240.1	GR:0020068			GO:0009899 - ent-kaurene synthase activity, GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009685 - gibberellin metabolic process, GO:0009536 - plastid, GO:0016829 - lyase activity, GO:0000287 - magnesium ion binding, GO:0009507 - chloroplast, GO:0008152 - metabolic process	TO:0000599 - enzyme activity, TO:0000172 - jasmonic acid sensitivity, TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0000357 - growth and development trait	PO:0009005 - root 
3133	KS3	OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25, TPS39, OsTPS39	ENT-KAURENE SYNTHASE 3	rice ent-kaurene synthase3, Ent-kaurene synthase 3, Ent-kaurene synthase-like 3, kaurene synthase like-3, Ent-kaurene synthase-like 2, terpene synthase 25	ENT-KAURENE SYNTHASE 3		4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 104cM linked with OsKS1 and OsKS2. EC=4.2.3.- Q0JA83. AB243669. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY347879. TPS39 in Sun et al. 2022.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os04g0611700	LOC_Os04g52210.1	GR:0020069			GO:0008152 - metabolic process, GO:0002213 - defense response to insect, GO:0016829 - lyase activity, GO:0006952 - defense response, GO:0000287 - magnesium ion binding, GO:0016102 - diterpenoid biosynthetic process, GO:0010333 - terpene synthase activity	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
3134	KS4	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16, TPS8, OsTPS8	ENT-KAURENE SYNTHASE 4	"rice ent-kaurene synthase4, Ent-kaurene synthase 4, Ent-kaurene synthase-like 4, Ent-kaurene synthase like-4, \"Syn-pimara-7, 15-diene synthase\", \"9-beta-pimara-7, 15-diene synthase\", syn-pimara-7 15-diene synthase, syn Pimaradiene synthase, KAURENE SYNTHASE-LIKE 4, terpene synthase 16"	ENT-KAURENE SYNTHASE 4		4	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 4 at 14.3cM linked with OsCPS4. EC=4.2.3.35 Q0JEZ8(japonica). Q66QH3(indica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY616862. AB126934.  AY347880. momilactone biosynthetic pathway. GO:0140426: PAMP-triggered immunity signalling pathway. TPS8 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os04g0179700	LOC_Os04g10060.1	GR:0020070			GO:0034279 - syn-pimara-7,15-diene synthase activity, GO:0009628 - response to abiotic stimulus, GO:0009536 - plastid, GO:0016829 - lyase activity, GO:0009899 - ent-kaurene synthase activity, GO:0002237 - response to molecule of bacterial origin, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0002238 - response to molecule of fungal origin, GO:0008152 - metabolic process, GO:0052315 - phytoalexin biosynthetic process, GO:0051501 - diterpene phytoalexin metabolic process, GO:0010200 - response to chitin, GO:0009266 - response to temperature stimulus, GO:0000287 - magnesium ion binding, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0002215 - defense response to nematode	TO:0000261 - insect damage resistance, TO:0000357 - growth and development trait, TO:0000599 - enzyme activity, TO:0000160 - UV light sensitivity, TO:0002669 - diterpenoid phytoalexin content, TO:0002670 - momilactone A content, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000432 - temperature response trait, TO:0000454 - stem borer resistance, TO:0000384 - nematode damage resistance, TO:0000168 - abiotic stress trait, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity	
3135	KS5	OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8, TPS45, OsTPS45	ENT-KAURENE SYNTHASE 5	"rice ent-kaurene synthase5, Ent-kaurene synthase 5, Ent-kaurene synthase-like 5, \"Ent-pimara-8(14), 15-diene synthase\", ent-pimara-8(14) 15-diene synthase, Ent-kaurene synthase-like 6, KAURENE SYNTHASE-LIKE 5, terpene synthase 8"	ENT-KAURENE SYNTHASE 5		2	This gene encodes one of the GA metabolic enzuymes; ent-kaurene synthase (KS). It is located on chromosome 2 at 86cM linked with OsKS6, OsKS7 and OsCPS2. EC=4.2.3.30 EC=4.2.3.n8 ent-isokaurene synthase. Ent-isokaur-15-ene synthase. Isokaurene synthase. AB126935. DQ823352. Q6Z5J6(japonica). A4KAG7(indica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY347882. TPS45 in Sun et al. 2022.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os02g0571300	LOC_Os02g36220.1, LOC_Os02g36220.2	GR:0020071			GO:0010333 - terpene synthase activity, GO:0000287 - magnesium ion binding, GO:0005739 - mitochondrion, GO:0006952 - defense response, GO:0034281 - ent-isokaurene synthase activity, GO:0008152 - metabolic process, GO:0016102 - diterpenoid biosynthetic process, GO:0051501 - diterpene phytoalexin metabolic process, GO:0034282 - ent-pimara-8(14),15-diene synthase activity, GO:0009536 - plastid, GO:0009899 - ent-kaurene synthase activity, GO:0016829 - lyase activity, GO:0002213 - defense response to insect	TO:0000357 - growth and development trait, TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance, TO:0000599 - enzyme activity	
3136	KS6	OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9, TPS9, TPS14, OsTPS14	ENT-KAURENE SYNTHASE 6	rice ent-kaurene synthase6, Ent-kaurene synthase-like 6, Ent-kaurene synthase 6, Ent-kaurene synthase-like 5, KAURENE SYNTHASE-LIKE 6, terpene synthase 9	ENT-KAURENE SYNTHASE 6		2	This gene encodes one of the GA metabolic enzyme: ent-kaurene synthase (KS). It is located on chromosome 2 at 86cM linked with OsKS5. OsKS7 and OsCPS2. Iso-kaurene synthase, Ent-isokaur-15-ene synthase, ent-isokaurene synthase. EC=4.2.3.n8 AB126936. DQ823353. A4KAG8. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AY347881. TPS14 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os02g0571800	LOC_Os02g36264.1	GR:0020072			GO:0009685 - gibberellin metabolic process, GO:0034281 - ent-isokaurene synthase activity, GO:0002213 - defense response to insect, GO:0016838 - carbon-oxygen lyase activity, acting on phosphates, GO:0009899 - ent-kaurene synthase activity, GO:0051501 - diterpene phytoalexin metabolic process, GO:0009536 - plastid, GO:0008152 - metabolic process, GO:0006952 - defense response, GO:0000287 - magnesium ion binding	TO:0000454 - stem borer resistance, TO:0000599 - enzyme activity, TO:0000261 - insect damage resistance, TO:0000357 - growth and development trait	
3137	KS7	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6, TPS6, TPS38, OsTPS38	ENT-KAURENE SYNTHASE 7	rice ent-kaurene synthase7, Ent-kaurene synthase 7, Ent-kaurene synthase-like 7, Ent-cassa-12, 15-diene synthase, ent-Cassadiene synthase, Diterpene cyclase 1, Oryza sativa diterpene cyclase 1, terpene synthase 6	ENT-KAURENE SYNTHASE 7		2	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 2 at 86cM linked with OsKS5, OsKS6 and OsCPS2. EC=4.2.3.28 Q0E088(japonica). Q00G37(indica). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. DQ823354. AB089272. TPS38 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0570400	LOC_Os02g36140.2, LOC_Os02g36140.5, LOC_Os02g36140.4, LOC_Os02g36140.3	GR:0020073			GO:0005739 - mitochondrion, GO:0006952 - defense response, GO:0009899 - ent-kaurene synthase activity, GO:0002238 - response to molecule of fungal origin, GO:0009651 - response to salt stress, GO:0008152 - metabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009536 - plastid, GO:0000287 - magnesium ion binding, GO:0051501 - diterpene phytoalexin metabolic process, GO:0052315 - phytoalexin biosynthetic process, GO:0002213 - defense response to insect, GO:0034277 - ent-cassa-12,15-diene synthase activity, GO:0016829 - lyase activity, GO:0050832 - defense response to fungus	TO:0000454 - stem borer resistance, TO:0000207 - plant height, TO:0000261 - insect damage resistance, TO:0000172 - jasmonic acid sensitivity, TO:0002675 - gibberellic acid content, TO:0000599 - enzyme activity, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000357 - growth and development trait	
3138	KS8	OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32, TPS17, OsTPS17, KSL11, OsKSL11	ENT-KAURENE SYNTHASE 8	rice ent-kaurene synthase8, Ent-kaurene synthase 8, Stemar-13-ene synthase, Stemarene synthase, syn-Stemarene synthase, Ent-kaurene synthase-like 8, Diterpene cyclase 2, terpene synthase 32	ENT-KAURENE SYNTHASE 8	OsKSL8i, OsKSL8j	11	This gene encodes one of the GA metabolic enzymes: ent-kaurene synthase (KS). It is located on chromosome 11 at 57.6cM linked with OsKS9. EC=4.2.3.33 Q6BDZ9. AB118056. TPS17 in Sun et al. 2022. KSL11 in Jiang et al. 2023.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0474800	LOC_Os11g28530.1, LOC_Os11g28530.2, LOC_Os11g28530.3	GR:0101307			GO:0006952 - defense response, GO:0002238 - response to molecule of fungal origin, GO:0034278 - stemar-13-ene synthase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0008152 - metabolic process, GO:0052315 - phytoalexin biosynthetic process, GO:0050832 - defense response to fungus, GO:0051501 - diterpene phytoalexin metabolic process, GO:0009609 - response to symbiotic bacterium, GO:0000287 - magnesium ion binding, GO:0009899 - ent-kaurene synthase activity, GO:0009536 - plastid, GO:0016829 - lyase activity, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0010200 - response to chitin	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root 
3139	KS9	OsKS9, KS9, KSL9, OsKSL9	ENT-KAURENE SYNTHASE 9	rice ent-kaurene synthase9, Ent-kaurene synthase 9	ENT-KAURENE SYNTHASE 9		11	This gene encodes one of the GA metabolic enzymes; ent-kaurene synthase (KS). It is located on chromosome 11 at 57.6cM linked with OsKS8. AC135398.	 Biochemical character			GR:0101308			GO:0009899 - ent-kaurene synthase activity		
3140	KO1	OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7	ENT-KAURENE OXIDASE 1	rice ent-kaurene oxidase1, cytochrome P450 701A7	ENT-KAURENE OXIDASE 1		6	This gene encodes one of the GA metabolic enzymes; ent-kaurene oxidase (KO). It is located on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0569900	LOC_Os06g37330.1				GO:0009651 - response to salt stress, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0010241 - ent-kaurene oxidase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding	TO:0006001 - salt tolerance	
5004	MOC1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33, GNP6, OsGNP6	MONOCULM 1	monoculm1, Monoculm 1, Protein MONOCULM 1, GRAS protein 33, Grain Number Per-panicle on chromosome 6	GRAS PROTEIN 33	moc1, moc1-4, moc1-5, gnp6	6	Q84MM9. GRO:0007049; 03-tillering stage. FJ032625-FJ032640 (wild rice MONOCULM1-orthologous regions). AY242058. Positively regulate rice tiller and panicle branches. ortholog of lateral suppressor (LS/LAS) gene from tomato and arabidopsis. Os06g0610350 in Ikeda et al. 2013, Zhang et al. 2021. KC700663-KC700674 (O. sativa and wild rice species, intron 2).	 Character as QTL - Yield and productivity,  Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Culm	Os06g0610350	LOC_Os06g40780.1	GR:0080008			GO:0048364 - root development, GO:0010075 - regulation of meristem growth, GO:0030528 - transcription regulator activity, GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0010014 - meristem initiation, GO:0010229 - inflorescence development, GO:0009737 - response to abscisic acid stimulus, GO:0009740 - gibberellic acid mediated signaling, GO:0009738 - abscisic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0048507 - meristem development	TO:0000501 - spikelet weight, TO:0000547 - primary branch number, TO:0000621 - inflorescence development trait, TO:0000050 - inflorescence branching, TO:0000207 - plant height, TO:0000456 - spikelet number, TO:0000152 - panicle number, TO:0000329 - tillering ability, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0000232 - axillary bud meristem , PO:0001083 - inflorescence development stage , PO:0004709 - axillary bud , PO:0008039 - stem base , PO:0005001 - basal axillary shoot system , PO:0006343 - axillary shoot system , PO:0007520 - root development stage 
5005	GI	OsGI, Gi, Os-GI	GIGANTEA	orthologue of the arabidopsis GIGANTEA, Gigantea, protein GIGANTEA, Os-GIGANTEA, OsGIGANTEA	PROTEIN GIGANTEA	osgi, osgi-1, gigantea	1	Q9AWL7. GRO:0007044; 06-heading stage. a rice ortholog of Arabidopsis gene for circadian clock component. AY885710-AY885737 and DQ374670-DQ374697  (O. sativa and other wild rice species, partial cds). AJ133787. GO:1902456: regulation of stomatal opening.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0182600	LOC_Os01g08700.8, LOC_Os01g08700.6, LOC_Os01g08700.5, LOC_Os01g08700.1, LOC_Os01g08700.2, LOC_Os01g08700.3, LOC_Os01g08700.4	GR:0100114			GO:0009266 - response to temperature stimulus, GO:0030154 - cell differentiation, GO:0048573 - photoperiodism, flowering, GO:0010229 - inflorescence development, GO:0007623 - circadian rhythm, GO:0009908 - flower development, GO:0005634 - nucleus, GO:0030187 - melatonin biosynthetic process, GO:0009416 - response to light stimulus, GO:0048511 - rhythmic process, GO:0009414 - response to water deprivation, GO:0047484 - regulation of response to osmotic stress, GO:0010119 - regulation of stomatal movement	TO:0000523 - stomatal resistance, TO:0000276 - drought tolerance, TO:0000227 - root length, TO:0001018 - transpiration rate, TO:0000278 - root to shoot ratio, TO:0000075 - light sensitivity, TO:0000432 - temperature response trait, TO:0000095 - osmotic response sensitivity, TO:0002616 - flowering time, TO:0000328 - sucrose content, TO:0000137 - days to heading, TO:0006002 - proline content	PO:0009049 - inflorescence , PO:0009005 - root , PO:0009006 - shoot system , PO:0009025 - vascular leaf 
5006	qAAA-6-1 (qAAA6-1)	qAAA-6-1 (qAAA6-1)	amylose content (QTL)-6-1(t)	amylose content (QTL)-6-1(t)					 Character as QTL - Grain quality								
5007	qDTM-4-2(t) (dtm4.1)	qDTM-4-2(t) (dtm4.1)	days to maturity (QTL)-4-2(t)	days to maturity (QTL)-4-2(t)					 Character as QTL - Yield and productivity								
5008	qDTM-7-1(t) (dtm4.1)	qDTM-7-1(t) (dtm4.1)	days to maturity (QTL)-7-1(t)	days to maturity (QTL)-7-1(t)					 Character as QTL - Yield and productivity								
5009	qDTM-8-1(t) (dtm4.1)	qDTM-8-1(t) (dtm4.1)	days to maturity (QTL)-8-1(t)	days to maturity (QTL)-8-1(t)					 Character as QTL - Yield and productivity								
5011	qGPP-1-2(t) (gpp1.1)	qGPP-1-2(t) (gpp1.1)	grains per panicle (QTL)-1-1(t)	grains per panicle (QTL)-1-1(t)					 Character as QTL - Yield and productivity								
5012	qGPP-1-2(t) (gpp11.1)	qGPP-1-2(t) (gpp11.1)	grains per panicle (QTL)-11-1(t)	grains per panicle (QTL)-11-1(t)					 Character as QTL - Yield and productivity								
5013	qGPP-1-2(t) (gpp12.1)	qGPP-1-2(t) (gpp12.1)	grains per panicle (QTL)-12-1(t)	grains per panicle (QTL)-12-1(t)					 Character as QTL - Yield and productivity								
5014	qGPP-1-2(t) (gpp12.2)	qGPP-1-2(t) (gpp12.2)	grains per panicle (QTL)-12-2(t)	grains per panicle (QTL)-12-2(t)					 Character as QTL - Yield and productivity								
5015	qGPP-1-2(t) (gpp2.1)	qGPP-1-2(t) (gpp2.1)	grains per panicle (QTL)-2-1(t)	grains per panicle (QTL)-2-1(t)					 Character as QTL - Yield and productivity								
5016	qGPP-1-2(t) (gpp2.2)	qGPP-1-2(t) (gpp2.2)	grains per panicle (QTL)-2-2(t)	grains per panicle (QTL)-2-2(t)					 Character as QTL - Yield and productivity								
5017	qGPP-1-2(t) (gpp3.1)	qGPP-1-2(t) (gpp3.1)	grains per panicle (QTL)-3-1(t)	grains per panicle (QTL)-3-1(t)					 Character as QTL - Yield and productivity								
5018	qGPP-1-2(t) (gpp3.2)	qGPP-1-2(t) (gpp3.2)	grains per panicle (QTL)-3-2(t)	grains per panicle (QTL)-3-2(t)					 Character as QTL - Yield and productivity								
5019	qGPP-1-2(t) (gpp4.1)	qGPP-1-2(t) (gpp4.1)	grains per panicle (QTL)-4-1(t)	grains per panicle (QTL)-4-1(t)					 Character as QTL - Yield and productivity								
5020	qGPP-1-2(t) (gpp8.1)	qGPP-1-2(t) (gpp8.1)	grains per panicle (QTL)-8-1(t)	grains per panicle (QTL)-8-1(t)					 Character as QTL - Yield and productivity								
5021	qGPP-1-2(t) (gpp9.1)	qGPP-1-2(t) (gpp9.1)	grains per panicle (QTL)-9-1(t)	grains per panicle (QTL)-9-1(t)					 Character as QTL - Yield and productivity								
5022	qGR-3-1 (qGR7-1)	qGR-3-1 (qGR7-1)	Germination rate (QTL)-7-1	Germination rate (QTL)-7-1					 Character as QTL - Germination								
5040	qGYD-2	qGYD-2	grain yield per plant (QTL)-2	grain yield per plant (QTL)-2					 Character as QTL - Yield and productivity								
5041	qGYD-6-2	qGYD-6-2	grain yield per plant (QTL)-6-2	grain yield per plant (QTL)-6-2					 Character as QTL - Yield and productivity								
5042	qGYD-7-3	qGYD-7-3	grain yield per plant (QTL)-7-3	grain yield per plant (QTL)-7-3					 Character as QTL - Yield and productivity								
5043	qHID-1-2(t) (qHID1-1)	qHID-1-2(t) (qHID1-1)	harvest index (QTL)-1-2(t)	harvest index (QTL)-1-2(t)					 Character as QTL - Yield and productivity								
5044	qHID-3-1(t) (qHID1-1)	qHID-3-1(t) (qHID1-1)	harvest index (QTL)-3-1(t)	harvest index (QTL)-3-1(t)					 Character as QTL - Yield and productivity								
5045	qHID-3-2(t) (qHID1-1)	qHID-3-2(t) (qHID1-1)	harvest index (QTL)-3-2(t)	harvest index (QTL)-3-2(t)					 Character as QTL - Yield and productivity								
5046	qHID-4-3(t) (qHID1-1)	qHID-4-3(t) (qHID1-1)	harvest index (QTL)-4-3(t)	harvest index (QTL)-4-3(t)					 Character as QTL - Yield and productivity								
5047	qHID-7-1(t) (qHID1-1)	qHID-7-1(t) (qHID1-1)	harvest index (QTL)-7-1(t)	harvest index (QTL)-7-1(t)					 Character as QTL - Yield and productivity								
5048	qHID-8-1(t) (qHID1-1)	qHID-8-1(t) (qHID1-1)	harvest index (QTL)-8-1(t)	harvest index (QTL)-8-1(t)					 Character as QTL - Yield and productivity								
5049	qHID-8-2(t) (qHID1-1)	qHID-8-2(t) (qHID1-1)	harvest index (QTL)-8-2(t)	harvest index (QTL)-8-2(t)					 Character as QTL - Yield and productivity								
5055	qNOP-12-1(t) (qNOP1-1)	qNOP-12-1(t) (qNOP1-1)	number of panicles per plant (QTL)-12-1(t)	number of panicles per plant (QTL)-12-1(t)					 Character as QTL - Yield and productivity								
5056	qNOP-12-2(t) (qNOP1-1)	qNOP-12-2(t) (qNOP1-1)	number of panicles per plant (QTL)-12-2(t)	number of panicles per plant (QTL)-12-2(t)					 Character as QTL - Yield and productivity								
5057	qNOP-3-1(t) (qNOP1-1)	qNOP-3-1(t) (qNOP1-1)	number of panicles per plant (QTL)-3-1(t)	number of panicles per plant (QTL)-3-1(t)					 Character as QTL - Yield and productivity								
5058	qNOP-4-1(t) (qNOP1-1)	qNOP-4-1(t) (qNOP1-1)	number of panicles per plant (QTL)-4-1(t)	number of panicles per plant (QTL)-4-1(t)					 Character as QTL - Yield and productivity								
5059	qNOP-4-2(t) (qNOP1-1)	qNOP-4-2(t) (qNOP1-1)	number of panicles per plant (QTL)-4-2(t)	number of panicles per plant (QTL)-4-2(t)					 Character as QTL - Yield and productivity								
5061	qPH-3-5(t) (qPHT3-5)	qPH-3-5(t) (qPHT3-5)	plant height (QTL)-3-5(t)	plant height (QTL)-3-5(t)					 Character as QTL - Plant growth activity								
5062	qPH-3-6(t) (qPHT3-6)	qPH-3-6(t) (qPHT3-6)	plant height (QTL)-3-6(t)	plant height (QTL)-3-6(t)					 Character as QTL - Plant growth activity								
5063	qPH-7-1(t) (qPHT1-1)	qPH-7-1(t) (qPHT1-1)	plant height (QTL)-7-1(t)	plant height (QTL)-7-1(t)					 Character as QTL - Plant growth activity								
5065	qPPL-11-1(t) (ppl12.1)	qPPL-11-1(t) (ppl12.1)	panicles per plant (QTL)-11-1(t)	panicles per plant (QTL)-11-1(t)					 Character as QTL - Yield and productivity								
5068	qRA-9-1 (qRA5-1)	qRA-9-1 (qRA5-1)	root activity (QTL)-9-1	root activity (QTL)-9-1					 Character as QTL - Root activity								
5069	qRGAF-4-1(t) (rgaf2a)	qRGAF-4-1(t) (rgaf2a)	retention of the green area of the flag leaf (QTL)-4-1(t)	retention of the green area of the flag leaf (QTL)-4-1(t)					 Character as QTL - Plant growth activity								
5070	qRGAF-4-2(t) (rgaf2a)	qRGAF-4-2(t) (rgaf2a)	retention of the green area of the flag leaf (QTL)-4-2(t)	retention of the green area of the flag leaf (QTL)-4-2(t)					 Character as QTL - Plant growth activity								
5072	qSF-10-2(t)	qSF-10-2(t)	spikelet fertility (QTL)-10-2(t)	spikelet fertility (QTL)-10-2(t)					 Character as QTL - Seed sterility								
5073	qSF-11(t)	qSF-11(t)	spikelet fertility (QTL)-11(t)	spikelet fertility (QTL)-11(t)					 Character as QTL - Seed sterility								
5074	qSF-3(t)	qSF-3(t)	spikelet fertility (QTL)-3(t)	spikelet fertility (QTL)-3(t)					 Character as QTL - Seed sterility								
5075	qSF-5(t)	qSF-5(t)	spikelet fertility (QTL)-5(t)	spikelet fertility (QTL)-5(t)					 Character as QTL - Seed sterility								
5076	qSF-6(t)	qSF-6(t)	spikelet fertility (QTL)-6(t)	spikelet fertility (QTL)-6(t)					 Character as QTL - Seed sterility								
5077	qSF-7(t)	qSF-7(t)	spikelet fertility (QTL)-7(t)	spikelet fertility (QTL)-7(t)					 Character as QTL - Seed sterility								
5078	qSF-8(t)	qSF-8(t)	spikelet fertility (QTL)-8(t)	spikelet fertility (QTL)-8(t)					 Character as QTL - Seed sterility								
5085	qTAA-3-1 (qTAA5-1)	qTAA-3-1 (qTAA5-1)	total amylase activity (QTL)-5-1	total amylase activity (QTL)-5-1					 Character as QTL - Grain quality								
5086	qTAA-3-1 (qTAA6-1)	qTAA-3-1 (qTAA6-1)	total amylase activity (QTL)-6-1	total amylase activity (QTL)-6-1					 Character as QTL - Grain quality								
5098	qTP-1 (tp7b)	qTP-1 (tp7b)	tillers per plant (QTL)-7-2	tillers per plant (QTL)-7-2					 Character as QTL - Yield and productivity								
5108	KO3	OsKO3, OsKOL3	ENT-KAURENE OXIDASE 3	rice ent-kaurene oxidase3	ENT-KAURENE OXIDASE 3		6	This gene encodes one of the GA metabolic enzymes, ent-kaurene oxidase (KO). It is locaated on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5.OsKOL3 may be a pseudogene (Itoh et al, 2004).	 Biochemical character						GO:0010241 - ent-kaurene oxidase activity		
5109	KO4	OsKO4, OsKOL4, KOS1, CYP701A8, OsCYP701A8, OsKO2, CYP701A8/OsKOL4	ENT-KAURENE OXIDASE 4	rice ent-kaurene oxidase4, cytochrome P450 701A8	ENT-KAURENE OXIDASE 4		6	This gene encodes one of the GA metabolic enzymes, ent-kaurene exidase (KO). It is located on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5. AY579214. OsKO2 in Chen et al. 2015 and Burman et al. 2017, Tang et al. 2018, Lee et al. 2020, Jang et al. 2021, Huang et al. 2023.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0569500	LOC_Os06g37300.1, LOC_Os06g37300.2				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0006952 - defense response, GO:0009686 - gibberellin biosynthetic process, GO:0009739 - response to gibberellin stimulus, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0010241 - ent-kaurene oxidase activity, GO:0020037 - heme binding, GO:0010336 - gibberellic acid homeostasis, GO:0009628 - response to abiotic stimulus, GO:0080006 - internode patterning	TO:0000074 - blast disease, TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000112 - disease resistance, TO:0000145 - internode length	
5110	KO5	OsKO5, OSKOL5, KOS2, OsKOS2, CYP701A9, OsCYP701A9, OsKO1, KO1	ENT-KAURENE OXIDASE 5	rice ent-kaurene oxidase5, cytochrome P450 701A9	ENT-KAURENE OXIDASE 5		6	This gene encodes one of the GA metabolic enzymes, ent-kaurene oxidase (KO). It is located on chromosome 6 at 76cM forming a gene cluster with 5 tandem repeats, OsKOL1 to OsKOL5.AY660664. OsKO1 in Lee et al. 2020, Song et al. 2020, Jang et al. 2021.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os06g0568600	LOC_Os06g37224.1				GO:0009628 - response to abiotic stimulus, GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0010241 - ent-kaurene oxidase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0080006 - internode patterning, GO:0010336 - gibberellic acid homeostasis, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0020037 - heme binding	TO:0000145 - internode length, TO:0000172 - jasmonic acid sensitivity, TO:0000112 - disease resistance	
5111	KAO	OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1, KO1	ENT-KAURENE OXIDASE	rice ent-kaurenoic acid oxidase, ent-kaurenoic acid oxidase, Putative cytochrome P450 DWARF3, reduced pollen elongation1	ENT-KAURENE OXIDASE	oskao-1, oskao-2, oskao-3, kao, kao-1, kao-3, rpe1	6	This gene encodes one of the GA metabolic enzymes, ent-kaurenoic acid oxidase (KAO). It is located on chromosome 6 at 2cM. EF577665-EF577669 (wild rice species). KO1 in Yang et al. 2021. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os06g0110000	LOC_Os06g02019.1	GR:0020074			GO:0009685 - gibberellin metabolic process, GO:0009566 - fertilization, GO:0009686 - gibberellin biosynthetic process, GO:0032940 - secretion by cell, GO:0004497 - monooxygenase activity, GO:0009739 - response to gibberellin stimulus, GO:0022900 - electron transport chain, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0080006 - internode patterning, GO:0009860 - pollen tube growth, GO:0009651 - response to salt stress	TO:0000166 - gibberellic acid sensitivity, TO:0000599 - enzyme activity, TO:0000357 - growth and development trait, TO:0006001 - salt tolerance, TO:0000544 - mesocotyl length, TO:0002675 - gibberellic acid content, TO:0000421 - pollen fertility, TO:0000420 - fertility related trait	
5112	GA20OX3	OsGA20ox3, ga20ox3	GIBBERELLIN 20-OXIDASE 3	rice GA 20-oxidase3, GA 20-oxidase 3, gibberellin C-20 oxidase 3, Gibberellin-20 oxidase 3	GIBBERELLIN 20-OXIDASE 3		7	This gene encodes one of the GA metabolic enzymes, GA 20-oxidase (GA20ox), being located on chromosome 7 at 26-31cM. Putative gibberellin 20-dioxygenase.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os07g0169700	LOC_Os07g07420.1	GR:0020081			GO:0005506 - iron ion binding, GO:0016491 - oxidoreductase activity, GO:0017000 - antibiotic biosynthetic process, GO:0009685 - gibberellin metabolic process, GO:0016216 - isopenicillin-N synthase activity, GO:0009686 - gibberellin biosynthetic process, GO:0048653 - anther development	TO:0000357 - growth and development trait, TO:0000599 - enzyme activity, TO:0002675 - gibberellic acid content	PO:0001004 - anther development stage , PO:0009066 - anther 
5113	PRL5	OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5	PANICLE RACHIS LENGTH 5	rice GA 20-oxidase4, GA 20-oxidase 4, gibberellin C-20 oxidase 4, Putative gibberellin 20-dioxygenase 4, PANICLE RACHIS LENGTH5	GIBBERELLIN 20-OXIDASE 4	Prl5-ST-1	5	This gene encodes one of the GA metabolic enzymes, GA 20-oxidase (GA20ox), being located on chromosome 5 at 80.3cM. Putative gibberellin 20-dioxygenase. likely related to drought and salt stress(Whankaew et al. 2020). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. CB660961. GA20ox2 in Yuan et al. 2019. GSE151043. TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence. TO:0000784: inflorescence branch morphology trait. TO:0001065: panicle inflorescence terminal primary branch length.	 Reproductive organ - panicle,  Reproductive organ - Inflorescence,  Biochemical character	Os05g0421900	LOC_Os05g34854.2, LOC_Os05g34854.1	GR:0020082			GO:0016216 - isopenicillin-N synthase activity, GO:0009685 - gibberellin metabolic process, GO:0006508 - proteolysis, GO:0016491 - oxidoreductase activity, GO:0017000 - antibiotic biosynthetic process, GO:0005506 - iron ion binding, GO:0004181 - metallocarboxypeptidase activity	TO:0000357 - growth and development trait, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000599 - enzyme activity, TO:0000050 - inflorescence branching	
5114	GA2OX1	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1	GIBBERELLIN 2-OXIDASE 1 	rice GA 2-oxidase1, GA 2-oxidase 1, Gibberellin 2-oxidase 1	GIBBERELLIN 2-OXIDASE 1		5	This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 5 at 29.1cM. AB059416, BAB40934	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm	Os05g0158600	LOC_Os05g06670.1	GR:0020077			GO:0009685 - gibberellin metabolic process, GO:0009739 - response to gibberellin stimulus, GO:0009725 - response to hormone stimulus, GO:0005506 - iron ion binding, GO:0016216 - isopenicillin-N synthase activity, GO:0017000 - antibiotic biosynthetic process, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000401 - plant growth hormone sensitivity	
5115	GA2OX2	OsGA2ox2, ga2ox 2, OsGA2ox-2	GIBBERELLIN 2-OXIDASE 2	rice GA 2-oxidase2, GA 2-oxidase 2, Gibberellin 2-oxidase 2	GIBBERELLIN 2-OXIDASE 2		1	This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 1 at 67.9cM. Os01g0332300 (Yamaguchi 2008) (build3?). Os01g0332200(build5?). AB092484.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os01g0332200	LOC_Os01g22910.1, LOC_Os01g22920.1	GR:0020078			GO:0009685 - gibberellin metabolic process, GO:0009725 - response to hormone stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000401 - plant growth hormone sensitivity, TO:0000303 - cold tolerance, TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0006001 - salt tolerance	
5116	GA2OX3	OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4	GIBBERELLIN 2-OXIDASE 3	rice GA 2-oxidase3, GA 2-oxidase 3, Gibberellin 2-oxidase 3	GIBBERELLIN 2-OXIDASE 3	ga2ox3	1	This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 1 at 130.1cM. GA2ox4 in Mimura et al. 2012.	 Character as QTL - Plant growth activity,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os01g0757200	LOC_Os01g55240.1	GR:0020079			GO:0009725 - response to hormone stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress, GO:0009685 - gibberellin metabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009625 - response to insect, GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0009742 - brassinosteroid mediated signaling	TO:0002675 - gibberellic acid content, TO:0002677 - brassinosteroid sensitivity, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000357 - growth and development trait	
5117	SBI	GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI	SHORTENED BASAL INTERNODES	rice GA 2-oxidase4, GA 2-oxidase 4, Gibberellin 2-oxidase 4	GIBBERELLIN 2-OXIDASE 4	SBISV14, SBIZhu1S	5	This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 5 at 106cM. EU179387-EU179391 (wild rice species). MF574209  (SBISV14), MF574210 (SBIZhu1S). a semi-dominant gene.	 Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0514600	LOC_Os05g43880.1	GR:0020080			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009685 - gibberellin metabolic process, GO:0009409 - response to cold, GO:0009725 - response to hormone stimulus, GO:0032940 - secretion by cell, GO:0080006 - internode patterning	TO:0000401 - plant growth hormone sensitivity, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000068 - lodging incidence	PO:0009047 - stem , PO:0005005 - shoot internode 
5120	qBR-1(t) (br1)	qBR-1(t) (br1)	brown rice percentage (QTL)-1(t)	brown rice percentage (QTL)-1(t)			1	This QTL controls brown rice percentage in relation to grain quality, being located on chromosome 1 between markers RM297 and RM315.	 Character as QTL - Grain quality								
5121	qBR-7(t) (br7)	qBR-7(t) (br7)	brown rice percentage (QTL)-7(t)	brown rice percentage (QTL)-7(t)			7	This QTL controls brown rice percentage in relation to grain quality, being located on chromosome 7 between markers RM10 and RM351.	 Character as QTL - Grain quality								
5122	qBR-8(t) (br8)	qBR-8(t) (br8)	brown rice percentage (QTL)-8(t)	brown rice percentage (QTL)-8(t)			8	This QTL controls brown rice percentage in relation to grain quality, being located on chrosomome 8 between markers RM126 and RM137.	 Character as QTL - Grain quality								
5123	qHR-1-2(t) (hr1)	qHR-1-2(t) (hr1)	head rice grain (QTL)-1-2(t)	head rice grain (QTL)-1-2(t)			1	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 1 between markers RM140 and RM5.	 Character as QTL - Grain quality								
5124	qHR-3(t) (hr3)	qHR-3(t) (hr3)	head rice grain (QTL)-3(t)	head rice grain (QTL)-3(t)			3	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 3 between markers RM81B and RM7.	 Character as QTL - Grain quality								
5125	qHR-6(t) (hr6)	qHR-6(t) (hr6)	head rice grain (QTL)-6(t)	head rice grain (QTL)-6(t)			6	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5126	qHR-8(t) (hr8)	qHR-8(t) (hr8)	head rice grain (QTL)-8(t)	head rice grain (QTL)-8(t)			8	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 8 between markers RM126 and RM137.	 Character as QTL - Grain quality								
5127	qHR-11(t) (hr11)	qHR-11(t) (hr11)	head rice grain (QTL)-11(t)	head rice grain (QTL)-11(t)			11	This QTL controls head rice grain percentage in relation to grain quality, being located on chromosome 11 between markers RM209 and RM229.	 Character as QTL - Grain quality								
5128	qRB-2(t) (rb2)	qRB-2(t) (rb2)	rice bran percentage (QTL)-2(t)	rice bran percentage (QTL)-2(t)			2	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 2 between markers RM236 and RM279.	 Character as QTL - Grain quality								
5129	qRB-4(t) (rb4)	qRB-4(t) (rb4)	rice bran percentage (QTL)-4(t)	rice bran percentage (QTL)-4(t)			4	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 4 between markers RM349 and RM131.	 Character as QTL - Grain quality								
5130	qRB-7(t) (rb7)	qRB-7(t) (rb7)	rice bran percentage (QTL)-7(t)	rice bran percentage (QTL)-7(t)			7	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 7 between markers RM10 and RM351.	 Character as QTL - Grain quality								
5131	qRB-10(t) (rb10)	qRB-10(t) (rb10)	rice bran percentage (QTL)-10(t)	rice bran percentage (QTL)-10(t)			10	This QTL controls rice bran percentage in relation to grain quality, being located on chromosome 10 between markers RM184 and RM171.	 Character as QTL - Grain quality								
5132	qMR-5(t) (mr5)	qMR-5(t) (mr5)	milled rice percentage (QTL)-5(t)	milled rice percentage (QTL)-5(t)			5	This QTL controls milled rice percentage in relation to grain quality, being located on chromosome 5 between markers RM188 and RM26.	 Character as QTL - Grain quality								
5133	qMR-7(t) (mr7)	qMR-7(t) (mr7)	milled rice percentage (QTL)-7(t)	milled rice percentage (QTL)-7(t)			7	This QTL controls milled rice percentage in relation to grain quality, being located on chromosome 7 between markers RM125 and RM11.	 Character as QTL - Grain quality								
5134	qAMY-3(t) (amy3)	qAMY-3(t) (amy3)	amylose content (QTL)-3(t)	amylose content (QTL)-3(t)			3	This QTL controls amylose content of grain, being located on chromosome 3 between markers RM7 and RM251.	 Character as QTL - Grain quality								
5135	qAMY-6(t) (amy6)	qAMY-6(t) (amy6)	amylose content (QTL)-6(t)	amylose content (QTL)-6(t)			6	This QTL controls amylose content of grain, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5136	qAMY-8(t) (amy8)	qAMY-8(t) (amy8)	amylose content (QTL)-8(t)	amylose content (QTL)-8(t)			8	This QTL controls amylose content of grain, being located on chromosome 8 between markers RM230 and RM264.	 Character as QTL - Grain quality								
5137	qALK-6-1(t) (alk6-1)	qALK-6-1(t) (alk6-1)	alkali spreading score (QTL)-6-1(t)	alkali spreading score (QTL)-6-1(t)			6	This QTL controls alkali spreading score of grain, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5138	qALK-6-2(t) (alk6-2)	qALK-6-2(t) (alk6-2)	alkali spreading score (QTL)-6-2(t)	alkali spreading score (QTL)-6-2(t)			6	This QTL controls alkali spreading score of grain, being located on chromosome 6 between markers RM253 and RM162	 Character as QTL - Grain quality								
5139	qPRO-1(t) (pro1)	qPRO-1(t) (pro1)	protein content (QTL)-1(t)	protein content (QTL)-1(t)			1	This QTL controls protein content of grain, being located on chromosome 1 between markers RM226 and RM297.	 Character as QTL - Grain quality								
5140	qPRO-2(t) (pro2)	qPRO-2(t) (pro2)	protein content (QTL)-2(t)	protein content (QTL)-2(t)			2	This QTL controls protein content of grain, being located on chromosome 2 between markers RM6 amd RM112.	 Character as QTL - Grain quality								
5141	qPRO-6(t) (pro6)	qPRO-6(t) (pro6)	protein content (QTL)-6(t)	protein content (QTL)-6(t)			6	This QTL controls protein content of grain, being located on chromosome 6 between markers RM190 and RM253.	 Character as QTL - Grain quality								
5142	qPRO-11(t) (pro11)	qPRO-11(t) (pro11)	protein content (QTL)-11(t)	protein content (QTL)-11(t)			11	This QTL controls protein content of grain, being located on chromosome 11 between markers RM209 and RM229.	 Character as QTL - Grain quality								
5143	qGL-3(t) (gl3)	qGL-3(t) (gl3)	grain length (QTL)-3(t)	grain length (QTL)-3(t)			3	This QTL controls grain length in relation to grain quality, being located on chromosome 3 between markers RM251 and RM338.	 Character as QTL - Grain quality								
5144	qGL-6(t) (gl6)	qGL-6(t) (gl6)	grain length (QTL)-6(t)	grain length (QTL)-6(t)			6	This QTL controls grain length in relation to grain quality, being located on chromosome 6 between markers RM162 and RM30.	 Character as QTL - Grain quality								
5145	qLWR-1(t) (lwr1)	qLWR-1(t) (lwr1)	grain length/width ratio (QTL)-1(t)	grain length/width ratio (QTL)-1(t)			1	This QTL controls grain length/width ratio in relation to grain quality, being located on chromosome 1 between markers RM5 and RM246.	 Character as QTL - Grain quality								
5146	qLWR-6(t) (lwr6)	qLWR-6(t) (lwr6)	grain length/width ratio (QTL)-6(t)	grain length/width ratio (QTL)-6(t)			6	This QTL controls grain length/width ratio in relation to grain quality, being located on chromosome 6 between markers RM253 and RM162.	 Character as QTL - Grain quality								
5147	qPH-1-6(t) (qPH1)	qPH-1-6(t) (qPH1)	plant height (QTL)-1-6(t)	plant height (QTL)-1-6(t)			1	This QTL controls plant height at 30 days after sowing, being located on chromosome 1 between markers RG173 and RM81A.	 Character as QTL - Plant growth activity								
5148	qPH-2-1(t)	qPH-2-1(t)	plant height (QTL)-2-1(t)	plant height (QTL)-2-1(t)			2	This QTL controls plant height at 40 days after sowing, being located on chromosome 2 between markers RM207 and RM48.	 Character as QTL - Plant growth activity								
5149	qPH-4-5 (t) (qPH4)	qPH-4-5 (t) (qPH4)	plant height (QTL)-4-5(t)	plant height (QTL)-4-5(t)			4	This QTL controls plant height at 40 days after sowing, being located on chromosome 4 between markers RM241 and G102.	 Character as QTL - Plant growth activity								
5150	qPH-5-4(t) (qPH5)	qPH-5-4(t) (qPH5)	plant height (QTL)-5-4(t)	plant height (QTL)-5-4(t)			5	This QTL controls plant height at 30 days after sowing, being located on chromosome 5 between markers R3166 and RG360.	 Character as QTL - Plant growth activity								
5151	qPH-6-3(t) (qPH6)	qPH-6-3(t) (qPH6)	plant height (QTL)-6-3(t)	plant height (QTL)-6-3(t)			6	This QTL controls plant height at 40 days after sowing, being located on chromosome 6 between markers C688 and R1952b.	 Character as QTL - Plant growth activity								
5152	qPH-10-2(t) (qPH10)	qPH-10-2(t) (qPH10)	plant height (QTL)-10-2(t)	plant height (QTL)-10-2(t)			10	This QTL controls plant height at 40 days after sowing, being located on chromosome 10 between markers RM228 and C405a.	 Character as QTL - Plant growth activity								
5153	qPH-11-3(t) (qPH11)	qPH-11-3(t) (qPH11)	plant height (QTL)-11-3(t)	plant height (QTL)-11-3(t)			11	This QTL controls plant height at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Plant growth activity								
5154	qMRL-3-1(t) (qMRL3)	qMRL-3-1(t) (qMRL3)	maximum root length (QTL)-3-1(t)	maximum root length (QTL)-3-1(t)			3	This QTL controls maximum root length at 40 days after sowing, being located on chromosome 3 between markers C316 and C63.	 Character as QTL - Root activity								
5155	qMRL-5-2(t) (qMRL5)	qMRL-5-2(t) (qMRL5)	maximum root length (QTL)-5-2(t)	maximum root length (QTL)-5-2(t)			5	This QTL controls maximum root length at 30 and 40 days after sowing, being located on chromosome 5 between markers R830 and R3166.	 Character as QTL - Root activity								
5156	qMRL-7-1(t) (qMRL7)	qMRL-7-1(t) (qMRL7)	maximum root length (QTL)-7-1(t)	maximum root length (QTL)-7-1(t)			7	This QTL controls maximum root length at 30 days after sowing, being located on chromosome 7 between markers RM234 and R1789.	 Character as QTL - Root activity								
5157	qMRL-10-1(t) (qMRL10)	qMRL-10-1(t) (qMRL10)	maximum root length (QTL)-10-1(t)	maximum root length (QTL)-10-1(t)			10	This QTL controls maximum root length at 40 days after sowing, being located on chromosome 10 between markers C1633 and C677.	 Character as QTL - Root activity								
5158	qMRL-11-1(t) (qMRL11)	qMRL-11-1(t) (qMRL11)	maximum root length (QTL)-11-1(t)	maximum root length (QTL)-11-1(t)			11	This QTL controls maximum root length at 30 days after sowing, being located on chromosome 11 between markers C794 and R2918.	 Character as QTL - Root activity								
5159	qMRL-11-2(t) (qwMRL11)	qMRL-11-2(t) (qwMRL11)	maximum root length (QTL)-11-2(t)	maximum root length (QTL)-11-2(t)			11	This QTL controls maximum root length at 40 days after sowing, being located on chromosome 11 between markers RM254 and G4001.	 Character as QTL - Root activity								
5160	qSPW	qSDW-1-2(t) (qSDW1)	SHOOT DRY WEIGHT  QTL	shoot dry weight (QTL)-1-2(t)	PMADS BOX PROTEIN 16 		1	This QTL controls shoot dry weight at 40 days after sowing, being located on chromosome 1 between markers C2340 and C86.	 Character as QTL - Plant growth activity								
5161	qSDW-2-1(t) (qSDW2)	qSDW-2-1(t) (qSDW2)	shoot dry weight (QTL)-2-1(t)	shoot dry weight (QTL)-2-1(t)			2	This QTL controls shoot dry weight at 30 days after sowing, being located on chromosome 2 between markers RM240 and RM213.	 Character as QTL - Plant growth activity								
5162	qSDW-3-2(t) (qSDW3)	qSDW-3-2(t) (qSDW3)	shoot dry weight (QTL)-3-2(t)	shoot dry weight (QTL)-3-2(t)			3	This QTL controls shoot dry weight at 40 days after sowing, being located on chromosome 3 between markers RG393 and C1087.	 Character as QTL - Plant growth activity								
5163	qSDW-5-3(t) (qSDW5)	qSDW-5-3(t) (qSDW5)	shoot dry weight (QTL)-5-3(t)	shoot dry weight (QTL)-5-3(t)			5	This QTL controls shoot dry weight at 30 and 40 days after sowing, being located on chromosome 5 between markers R3166 and RG360.	 Character as QTL - Plant growth activity								
5164	qSDW-10-1(t) (qSDW10)	qSDW-10-1(t) (qSDW10)	shoot dry weight (QTL)-10-1(t)	shoot dry weight (QTL)-10-1(t)			10	This QTL controls shoot dry weight at 40 days after sowing, being located on chromosome 10 between markers RG561 and RM288.	 Character as QTL - Plant growth activity								
5165	qSDW-11-1(t) (qSDW11)	qSDW-11-1(t) (qSDW11)	shoot dry weight (QTL)-11-1(t)	shoot dry weight (QTL)-11-1(t)			11	This QTL controls shoot dry weight at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Plant growth activity								
5166	qRDW-2-1(t) (qRDW2)	qRDW-2-1(t) (qRDW2)	root dry weight (QTL)-2-1(t)	root dry weight (QTL)-2-1(t)			2	This QTL controls root dry weight at 30days after sowing, being located on chromosome 2 between markers RM240 and RM213.	 Character as QTL - Root activity								
5167	qRDW-3-1(t) (qRDW3)	qRDW-3-1(t) (qRDW3)	root dry weight (QTL)-3-1(t)	root dry weight (QTL)-3-1(t)			3	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 3 betwen markers RZ403 and R19.	 Character as QTL - Root activity								
5168	qRDW-4-1(t) (qRDW4)	qRDW-4-1(t) (qRDW4)	root dry weight (QTL)-4-1(t)	root dry weight (QTL)-4-1(t)			4	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 4 between markers C820 and C933.	 Character as QTL - Root activity								
5169	qRDW-5-3(t) (qRDW5)	qRDW-5-3(t) (qRDW5)	root dry weight (QTL)-5-3(t)	root dry weight (QTL)-5-3(t)			5	This QTL controls root dry weight at 30 days after sowing, being located on chromosome 5 between markers R830 and R3166.	 Character as QTL - Root activity								
5170	qRDW-5-4(t) (qRDW5)	qRDW-5-4(t) (qRDW5)	root dry weight (QTL)-5-4(t)	root dry weight (QTL)-5-4(t)			5	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 5 between markers R3166 and RG360.	 Character as QTL - Root activity								
5171	qRDW-10-2(t) (qRDW10)	qRDW-10-2(t) (qRDW10)	root dry weight (QTL)-10-2(t)	root dry weight (QTL)-10-2(t)			10	This QTL controls root dry weight at 40 days after sowing, being located on chromosome 10 between markers RM228 and C405a.	 Character as QTL - Root activity								
5172	qRDW-11-1(t) (qRDW11)	qRDW-11-1(t) (qRDW11)	root dry weight (QTL)-11-1(t)	root dry weight (QTL)-11-1(t)			11	This QTL controls root dry weight at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Root activity								
5173	qTDW-2-1(t) (qTDW2)	qTDW-2-1(t) (qTDW2)	total dry weight (QTL)-2-1(t)	total dry weight (QTL)-2-1(t)			2	This QTL controls total dry weight at 30 days after sowing, being located on chromosome 2 between markers RM240 and RM213.	 Character as QTL - Plant growth activity								
5174	qTDW-3-2(t) (qTDW3)	qTDW-3-2(t) (qTDW3)	total dry weight (QTL)-3-2(t)	total dry weight (QTL)-3-2(t)			3	This QTL controls total dry weight at 40 days after sowing, being located on chromosome 3 between markers RZ403 and R19.	 Character as QTL - Plant growth activity								
5175	qTDW-10-1(t) (qTDW10)	qTDW-10-1(t) (qTDW10)	total dry weight (QTL)-10-1(t)	total dry weight (QTL)-10-1(t)			10	This QTL controls total dry weight at 40 days after sowing, being located on chromosome 10 between markers RM228 and C405a.	 Character as QTL - Plant growth activity								
5176	qTDW-11-1(t)  (qTDW11)	qTDW-11-1(t)  (qTDW11)	total dry weight (QTL)-11-1(t)	total dry weight (QTL)-11-1(t)			11	This QTL controls total dry weight at 30 days after sowing, being located on chromosome 11 between markers RG118 and C794.	 Character as QTL - Plant growth activity								
5177	qRSR-4-1(t) (qRSR4)	qRSR-4-1(t) (qRSR4)	rooot-shoot ratio (QTL)-4-1(t)	rooot-shoot ratio (QTL)-4-1(t)			4	This QTL controls root-shoot ratio at 40 days after sowing, being located on chromosome 4 between markers C820 and C933.	 Character as QTL - Plant growth activity								
5178	qRSR-11-1(t) (qRSR11)	qRSR-11-1(t) (qRSR11)	root-shoot ratio (QTL)-11-1(t)	root-shoot ratio (QTL)-11-1(t)			11	This QTL controls root-shoot ratio at 30 days after sowing, being located on chromosome 11 between markers RM224 and Y6854L.	 Character as QTL - Plant growth activity								
5179	qPHYLCHR-4-1(t) (phyllochron)	qPHYLCHR-4-1(t) (phyllochron)	phyllochron (QTL)-4-1(t)	phyllochron (QTL)-4-1(t)			4	This QTL controls the time interval between the appearance of successive leaves, phyllochron, being located on chromosome 4 between markers, C891 and RM3524.	 Character as QTL - Plant growth activity								
5180	qPHYLCHR-10-1(t) (phyllochron)	qPHYLCHR-10-1(t) (phyllochron)	phyllochron (QTL)-10-1(t)	phyllochron (QTL)-10-1(t)			10	This QTL controls the time interval between the apperarnce of successive leaves, phyllochron, being located on chromosome 10 between markers, R1629 and R2447.	 Character as QTL - Plant growth activity								
5181	qPHYLCHR-11-1(t) (phyllochron)	qPHYLCHR-11-1(t) (phyllochron)	phyllochron (QTL)-11-1(t)	phyllochron (QTL)-11-1(t)			11	This QTL controls the time interval between the appearance of successive leaves, phyllochron, being located on chromosome 11 between markers, R3202 and C1350.	 Character as QTL - Plant growth activity								
5182	qTN-2-1(t) (Tiller number)	qTN-2-1(t) (Tiller number)	tiller number (QTL)-2-1(t)	tiller number (QTL)-2-1(t)			2	This QTL controls the tiller number, being located on chromosome 2 between markers, R26 and C424.	 Character as QTL - Plant growth activity								
5183	qTN-5-1(t) (tiller number)	qTN-5-1(t) (tiller number)	tiller number (QTL)-5-1(t)	tiller number (QTL)-5-1(t)			5	This QTL controls the tiller number, being located on chromosome 5 between markers, RM440 and RM3870.	 Character as QTL - Plant growth activity								
5184	qTN-6-1(t) (tiller number)	qTN-6-1(t) (tiller number)	tiller number (QTL)-6-1(t)	tiller number (QTL)-6-1(t)			6	This QTL controls the tiller number, being located on chromosome 6 between markers, RM217 and R2147.	 Character as QTL - Plant growth activity								
5185	qTN-8-1(t) (tiller number)	qTN-8-1(t) (tiller number)	tiller number (QTL)-8-1(t)	tiller number (QTL)-8-1(t)			8	This QTL controls the tiller number, being located on chromosome 8 between markers, RM264 and R1963.	 Character as QTL - Plant growth activity								
5186	qT2DM-2-1(t)	qT2DM-2-1(t)	T2 tiller dormancy (QTL)-2-1(t)	T2 tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T2 tiller, being located on chromosome 2 between markers, RM166 and C1445.	 Character as QTL - Plant growth activity								
5187	qT2DM-6-1(t)	qT2DM-6-1(t)	T2 tiller dormancy (QTL)-6-1(t)	T2 tiller dormancy (QTL)-6-1(t)			6	This QTL controls the dormancy of T2 tiller, being located on chromosome 6 between markers, R2147 and R2171.	 Character as QTL - Plant growth activity								
5188	qT2pDM-2-1(t)	qT2pDM-2-1(t)	T2p tiller dormancy (QTL)-2-1(t)	T2p tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T2-p tiller, being located on chromosome 2 between markers C424 and C747.	 Character as QTL - Plant growth activity								
5189	qT22DM-2-1(t)	qT22DM-2-1(t)	T22 tiller dormancy (QTL)-2-1(t)	T22 tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T2-2 tiller, being located on chromosome 2 between markers, C424 and C747.	 Character as QTL - Plant growth activity								
5190	qT22DM-5-1(t) qT22D qT22DM-5-1(t)	qT22DM-5-1(t) qT22D qT22DM-5-1(t)	T22 tiller dormancy (QTL)-5-1(t)	T22 tiller dormancy (QTL)-5-1(t)			5	This QTL controls the dormancy of T2-2 tiller,  being located on chromosome 5 between markers, RM3870 and C1018.	 Character as QTL - Plant growth activity								
5191	qT3pDM-1-1(t)	qT3pDM-1-1(t)	T3p tiller dormancy (QTL)-1-1(t)	T3p tiller dormancy (QTL)-1-1(t)			1	This QTL controls the dormancy of T3-p tiller, being located on chromosome 1 between markers C86 and C742.	 Character as QTL - Plant growth activity								
5192	qT31DM-2-1(t)	qT31DM-2-1(t)	T31 tiller dormancy (QTL)-2-1(t)	T31 tiller dormancy (QTL)-2-1(t)			2	This QTL controls the dormancy of T3-1 tiller, being located on chromosome 2 between markers, C424 and C747.	 Character as QTL - Plant growth activity								
5193	qT31DM-5-1(t)	qT31DM-5-1(t)	T31 tiller dormancy (QTL)-5-1(t)	T31 tiller dormancy (QTL)-5-1(t)			5	This QTL controls the dormancy of T3-1 tiller, being located on chromosome 5 between markers, RM3870 and C1018.	 Character as QTL - Plant growth activity								
5194	qT4pDM-1-1(t)	qT4pDM-1-1(t)	T4p tiller dormancy (QTL)-1-1(t)	T4p tiller dormancy (QTL)-1-1(t)			1	This QTL controls the dormancy of T4-p tiller, being located on chromosome 1 between markers, C742 and R117.	 Character as QTL - Plant growth activity								
5195	qT4pDM-3-1(t)	qT4pDM-3-1(t)	T4p tiller dormancy (QTL)-3-1(t)	T4p tiller dormancy (QTL)-3-1(t)			3	This QTL controls the dormancy of T4-p tiller, being located on chromosome 3 between markers, R356 and R2170.	 Character as QTL - Plant growth activity								
5196	qPHO-6(t)	qPHO-6(t)	phosphorous deficiency tolerance (QTL)-6(t)	phosphorous deficiency tolerance (QTL)-6(t)			6	This QTL controls phosphorous deficiency tolerance, being located on chromosome 6.	 Tolerance and resistance - Stress tolerance			GR:0061495					
5197	qNFP-2-1(t)	qNFP-2-1(t)	Number of florets per panicle (QTL)-2-1(t)	Number of florets per panicle (QTL)-2-1(t)			2	This QTL controls the floret number per panicle, being located on chromosome 2 between markers RM3421 and RM7286.	 Character as QTL - Yield and productivity								
5198	qNPBP-2-1(t)	qNPBP-2-1(t)	Number of primary branches per panicle (QTL)-2-1(t)	Number of primary branches per panicle (QTL)-2-1(t)			2	This QTL controls the primary branch number per panicle, being located on chromosome 2 between markers RM3421 and RM7286.	 Character as QTL - Yield and productivity								
5199	qNPBP-4-1(t)	qNPBP-4-1(t)	Number of primary branches per panicle (QTL)-4-1(t)	Number of primary branches per panicle (QTL)-4-1(t)			4	This QTL controls the primary branch number per panicle, being located on chromosome 4 between markers RM303 and RM348.	 Character as QTL - Yield and productivity								
5200	qNFPB-9-1(t)	qNFPB-9-1(t)	Number of florets per primary branch (QTL)-9-1(t)	Number of florets per primary branch (QTL)-9-1(t)			9	This QTL controls the floret number per primary branch, being located on chromosome 9 between markers RM5657 and RM566.	 Character as QTL - Yield and productivity								
5201	qNFPB-11-1(t)	qNFPB-11-1(t)	Number of florets per primary branch (QTL)-11-1(t)	Number of florets per primary branch (QTL)-11-1(t)			11	This QTL controls the floret number per primary branch, being located on chromosome 11 between markers RM286 and RM332.	 Character as QTL - Yield and productivity								
5202	qFPFFA-1-1(t)	qFPFFA-1-1(t)	Frequency of pre-flowering floret abortion (QTL)-1-1(t)	Frequency of pre-flowering floret abortion (QTL)-1-1(t)			1	This QTL controls the frequency of pre-flowering floret abortion, being located on chromosome 1 between markers RM1297 and RM297.	 Character as QTL - Yield and productivity								
5203	qFPFFA-10-1(t)	qFPFFA-10-1(t)	Frequency of pre-flowering floret abortion (QTL)-10-1(t)	Frequency of pre-flowering floret abortion (QTL)-10-1(t)			10	This QTL controls the frequency of pre-flowering floret abortion, being located on chromosome 10 between markers RM171 and RM333.	 Character as QTL - Yield and productivity								
5204	qFPFFA-11-1(t)	qFPFFA-11-1(t)	Frequency of pre-flowering floret abortion (QTL)-11-1(t)	Frequency of pre-flowering floret abortion (QTL)-11-1(t)			11	This QTL controls the frequency of pre-flowering floret abortion, being located on chromosome 11 between markers RM5599 and RM441.	 Character as QTL - Yield and productivity								
5205	qPNN-2-1(t) (Pnn1)	qPNN-2-1(t) (Pnn1)	panicle number (QTL)-2-1(t)	panicle number (QTL)-2-1(t)			2	This QTL controls panicle number, nitrogen use efficiency and yield,  asssociated with the protein content of GS1 (cytosolic glutamine synthetase), being located on chromosome 2 between markers 2-S152 and 2-S173.	 Character as QTL - Yield and productivity								
5206	qLT-8-1(t) (qLT-8)	qLT-8-1(t) (qLT-8)	Luster of cooked rice (QTL)-8-1(t)	Luster of cooked rice (QTL)-8-1(t)			8	This QTL controls a luster of cooked rice, being located on chromosome 8 between markers G1149 and XNpb41.	 Character as QTL - Grain quality								
5207	qLT-4-1(t) (qLT-4)	qLT-4-1(t) (qLT-4)	Luster of cooked rice (QTL)-4-1(t)	Luster of cooked rice (QTL)-4-1(t)			4	This QTL controls a luster of cooked rice, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5208	qLT-6-1(t) (qLT-6)	qLT-6-1(t) (qLT-6)	Luster of cooked rice (QTL)-6-1(t)	Luster of cooked rice (QTL)-6-1(t)			6	This QTL controls a luster of cooked rice, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5209	qST-8-1(t) (qST-8)	qST-8-1(t) (qST-8)	Scent of cooked rice (QTL)-8-1(t)	Scent of cooked rice (QTL)-8-1(t)			8	This QTL controls a scent of cooked rice, being located on chromosome 8 between markers G1149 and XNpb41.	 Character as QTL - Grain quality								
5210	qST-4-1(t) (qST-4)	qST-4-1(t) (qST-4)	scent of cooked rice (QTL)-4-1(t)	scent of cooked rice (QTL)-4-1(t)			4	This QTL controls a scent of cooked rice, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5211	qTD-6-1(t) (qTD-6)	qTD-6-1(t) (qTD-6)	tenderness of cooked rice (QTL)-6-1(t)	tenderness of cooked rice (QTL)-6-1(t)			6	This QTL controls tenderness of cooked rice, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5212	qTD-8-1(t) (qTD-8)	qTD-8-1(t) (qTD-8)	tenderness of cooked rice (QTL)-8-1(t)	tenderness of cooked rice (QTL)-8-1(t)			8	This QTL controls tenderness of cooked rice, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5213	qVC-4-1(t) (qVC-4)	qVC-4-1(t) (qVC-4)	viscosity of cooked rice (QTL)-4-1(t)	viscosity of cooked rice (QTL)-4-1(t)			4	This QTL controls viscosity of cooked rice, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5214	qVC-6-1(t) (qVC-6)	qVC-6-1(t) (qVC-6)	viscosity of cooked rice (QTL)-6-1(t)	viscosity of cooked rice (QTL)-6-1(t)			6	This QTL controls viscosity of cooked rice, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5215	qEL-3-1(t) (qEL-3)	qEL-3-1(t) (qEL-3)	elasticity of cooked rice (QTL)-3-1(t)	elasticity of cooked rice (QTL)-3-1(t)			3	This QTL controls elasticity of cooked rice, being located on chromosome 3 between markers C1677 and R19.	 Character as QTL - Grain quality								
5216	qEL-8-1(t) (qEL-8)	qEL-8-1(t) (qEL-8)	elasticity of cooked rice (QTL)-8-1(t)	elasticity of cooked rice (QTL)-8-1(t)			8	This QTL controls elasticity of cooked rice, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5217	qIVOE-8-1(t) (qIVOE-8)	qIVOE-8-1(t) (qIVOE-8)	integrated value of organoleptic evaluation (QTL)-8-1(t)	integrated value of organoleptic evaluation (QTL)-8-1(t)			8	This QTL controls integrated value of organoleptic evaluation, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5218	qAC-8-1(t) (qAC-8)	qAC-8-1(t) (qAC-8)	amylose content (QTL)-8-1(t)	amylose content (QTL)-8-1(t)			8	This QTL controls amylose content of cooked rice, being located on chromosome 8 between markers G1149 and R727.	 Character as QTL - Grain quality								
5219	qAC-9-1(t) (qAC-9a)	qAC-9-1(t) (qAC-9a)	amylose content (QTL)-9-1(t)	amylose content (QTL)-9-1(t)			9	This QTL controls amylose content of cooked rice, being located on chromosome 9 between markers XNpb36 and XNpb103.	 Character as QTL - Grain quality								
5220	qAC-9-2(t) (qAC-9b)	qAC-9-2(t) (qAC-9b)	amylose content (QTL)-9-2(t)	amylose content (QTL)-9-2(t)			9	This QTL controls amylose content of cooked rice, being located on chromosome 9 between markers C609 and C506.	 Character as QTL - Grain quality								
5221	qAC-12-1(t) (qAC-12)	qAC-12-1(t) (qAC-12)	amylose content (QTL)-12-1(t)	amylose content (QTL)-12-1(t)			12	This QTL controls amylose content of cooked rice, being located on chromosome 12 between markers XNpb189-2 and XNpb24-2.	 Character as QTL - Grain quality								
5222	qGT-3-1(t) (qGT-3)	qGT-3-1(t) (qGT-3)	geratinization temperature (QTL)-3-1(t)	geratinization temperature (QTL)-3-1(t)			3	This QTL controls gelatinization temperature of cooked rice grain, being located on chromosome 3 between markers C1677 and R3156.	 Character as QTL - Grain quality								
5223	qGT-1-1(t) (qGT-1)	qGT-1-1(t) (qGT-1)	gelatinization temperature (QTL)-1-1(t)	gelatinization temperature (QTL)-1-1(t)			1	This QTL controls gelatinization temperature of cooked rice grain, being located on chromosome 1 between markers C955 and C970.	 Character as QTL - Grain quality								
5224	qGT-6-1(t) (qGT-6)	qGT-6-1(t) (qGT-6)	gelatinization temperature (QTL)-6-1(t)	gelatinization temperature (QTL)-6-1(t)			6	This QTL controls gelatinization temperature of cooked rice grain, being located on chromosome 6 between markers C688 and R2171.	 Character as QTL - Grain quality								
5225	qGC-4-1(t) (qGC-4)	qGC-4-1(t) (qGC-4)	gel consistency (QTL)-4-1(t)	gel consistency (QTL)-4-1(t)			4	This QTL controls gel consistency of cooked rice grain, being located on chromosome 4 between markers C445 and Ky4.	 Character as QTL - Grain quality								
5226	qGC-6-4(t) (qGC-6)	qGC-6-4(t) (qGC-6)	gel consistency (QTL)-6-4(t)	gel consistency (QTL)-6-4(t)			6	This QTL controls gel consistency of cooked rice grain, being located on chromosome 6 between markers XNpb209 and C688.	 Character as QTL - Grain quality								
5227	qGC-11-1(t) (qGC-11)	qGC-11-1(t) (qGC-11)	gel consistency (QTL)-11-1(t)	gel consistency (QTL)-11-1(t)			11	This QTL controls gel consistency of cooked rice grain, being located on chromosome 11 between markers XNpb257 and C1350.	 Character as QTL - Grain quality								
5228	qGC-3-1(t) (qGC-3)	qGC-3-1(t) (qGC-3)	gel consistency (QTL)-3-1(t)	gel consistency (QTL)-3-1(t)			3	This QTL controls gel consistency of cooked rice grain, being located on chromosome 3 between markers C1677 and R3156.	 Character as QTL - Grain quality								
5229	qGC-5-1(t) (qGC-5)	qGC-5-1(t) (qGC-5)	gel consistency (QTL)-5-1(t)	gel consistency (QTL)-5-1(t)			5	This QTL controls gel consistency of cooked rice grain, being located on chromosome 5 between markers C263 and R3166.	 Character as QTL - Grain quality								
5230	BPH14	Bph14 (Qbp1), Bph14, Qbp1, qBPH-3	BROWN PLANTHOPPER RESISTANCE 14	brown planthopper resistance 14, Brown planthopper resistance-14, BROWN PLANTHOPPER RESISTANCE14			3	This brown planthopper resistant gene was introduced from O. officinalis in China. This gene is located on the long arm of chromosome 3 flanked by RFLP markers R1925 and G1318. GRO:0007047; 02-seedling. FJ941067, Bph14 encodes a coiled-coil, nucleotide-binding, and leucine-rich repeat (CC-NB-LRR) protein. Bph14 shares 83% sequence identity with its allele (Os03g0848700) in Nipponbare.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os03g0848700	LOC_Os03g63150.1, LOC_Os03g63150.2	GR:0060102			GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0009625 - response to insect, GO:0002213 - defense response to insect, GO:0005737 - cytoplasm	TO:0000424 - brown planthopper resistance, TO:0000175 - bacterial blight disease resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
5232	qPF-5-1(t) (pf5)	qPF-5-1(t) (pf5)	pollen fertility (QTL)-5-1(t)	pollen fertility (QTL)-5-1(t)			5	This QTL controls pollen fertility in japonica and indica cross, being located on chromosome 5 between markers MRG1010 and RM13.	 Character as QTL - Seed sterility								
5233	qPF-12-1(t) (pf12)	qPF-12-1(t) (pf12)	pollen fertility (QTL)-12-1(t)	pollen fertility (QTL)-12-1(t)			12	This QTL controls pollen fertility in japonica and indica cross, being located on chromosome 12 between markers RM19 and RM247.	 Character as QTL - Seed sterility								
5234	qEF-6-1(t) (Ef6, S5)	qEF-6-1(t) (Ef6, S5)	embryo sac fertility (QTL)-6-1(t)	embryo sac fertility (QTL)-6-1(t)			6	This QTL controls embryo sac fertility in japonica and indica cross, being located on chromosome 6 between markers C11 and RM276. This QTL corresponds well with the previously reported wide compatibility gene S5.	 Character as QTL - Seed sterility								
5235	qSPF-5-1(t) (spf5)	qSPF-5-1(t) (spf5)	spikelet fertility (QTL)-5-1(t)	spikelet fertility (QTL)-5-1(t)			5	This QTL controls spikelet fertility in japonica and indica cross, being located on chromosome 5 between markers RM13 andRM405.	 Character as QTL - Seed sterility								
5236	qSPF-6-1(t) (spf6)	qSPF-6-1(t) (spf6)	spikelet fertility (QTL)-6-1(t)	spikelet fertility (QTL)-6-1(t)			6	This QTL controls spikelet fertility in japonica and indica cross, being located on chromosome 6 between markers RG213 and RM557.	 Character as QTL - Seed sterility								
5237	qSPF-8-1(t) (spf8)	qSPF-8-1(t) (spf8)	spikelet fertility (QTL)-8-1(t)	spikelet fertility (QTL)-8-1(t)			8	This QTL controls spikelet fertility in japonica and indica cross, being located on chromosome 8 between markers H4698-1 and H3878-1.	 Character as QTL - Seed sterility								
5238	HSA3	hsa3(t)	FEMALE STERILITY3(T)	female sterility3(t)		hsa3-AS	9	Female sterility is caused by epistatic interaction among hsa1-IR (indica), hsa2-AS and hsa3-AS (japonica) in japonica-indica cross. This gene is located on chromosome 9 in the vicinity of marker RM285.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness						GO:0007275 - multicellular organismal development		
5239	qHD-1-1(t) (Hd1a)	qHD-1-1(t) (Hd1a)	heading date (QTL)-1-1(t)	heading date (QTL)-1-1(t)			1	This QTL controls heading date, being located on chromosome 1 between markers C112 and RG236.	 Reproductive organ - Heading date								
5240	qHD-1-2(t) (QHd1b)	qHD-1-2(t) (QHd1b)	heading date (QTL)-1-2(t)	heading date (QTL)-1-2(t)			1	This QTL controls heading date, being located on chromosome 1 between markers RG532 and RG140.	 Reproductive organ - Heading date								
5241	qHD-3-4(t) (QHd3b)	qHD-3-4(t) (QHd3b)	heading date (QTL)-3-4(t)	heading date (QTL)-3-4(t)			3	This QTL controls heading date, being located on chromosome 3 between markers G249 and RG418.	 Reproductive organ - Heading date								
5242	qHD-8-2(t) (QHd8)	qHD-8-2(t) (QHd8)	heading date (QTL)-8-2(t)	heading date (QTL)-8-2(t)			8	This QTL controls heading date, being located on chromosome 8 between markers RZ323 and C225.	 Reproductive organ - Heading date								
5243	qHD-11-3(t) (QHd11)	qHD-11-3(t) (QHd11)	heading date (QTL)-11-3(t)	heading date (QTL)-11-3(t)			11	This QTL controls heading date, being located on chromosome 11 between markers RZ53 and RZ781,	 Reproductive organ - Heading date								
5244	qHD-12-2(t) (QHd12)	qHD-12-2(t) (QHd12)	heading date (QTL)-12-2(t)	heading date (QTL)-12-2(t)			12	This QTL controls heading date, being located on chromosome12 between markers G402 and RG20q.	 Reproductive organ - Heading date								
5245	qPH-1-7(t) (QPh1a)	qPH-1-7(t) (QPh1a)	plant height (QTL)-1-7(t)	plant height (QTL)-1-7(t)			1	This QTL controls plant height, being located on chromosome 1 between markers RZ14 and C944b.	 Character as QTL - Plant growth activity								
5246	qPH-1-8(t) (QPh1b)	qPH-1-8(t) (QPh1b)	plant height (QTL)-1-8(t)	plant height (QTL)-1-8(t)			1	This QL controls plant height, being located on chromosome 1 between markers RZ776 and CDO348.	 Character as QTL - Plant growth activity								
5247	qPH-2-2(t) (QPh2)	qPH-2-2(t) (QPh2)	plant height (QTL)-2-2(t)	plant height (QTL)-2-2(t)			2	This QTL controls plant height, being located on chromosome 2 between markers RG520 and RZ446b.	 Character as QTL - Plant growth activity								
5248	qPH-3-7(t) (QPh3b)	qPH-3-7(t) (QPh3b)	plant height (QTL)-3-7(t)	plant height (QTL)-3-7(t)			3	This QTL controls plant height, being located on chromosome 3 between markers RZ284 and RZ403b.	 Character as QTL - Plant growth activity								
5249	qPH-6-4(t) (QPh6)	qPH-6-4(t) (QPh6)	plant height (QTL)-6-4(t)	plant height (QTL)-6-4(t)			6	This QTL controls plant height, being located on chromosome 6 between markers RZ682 and C236.	 Character as QTL - Plant growth activity								
5250	qPH-8-3(t) (QPh8)	qPH-8-3(t) (QPh8)	plant height (QTL)-8-3(t)	plant height (QTL)-8-3(t)			8	This QTL controls plant height, being located on chromosome 8 between markers G104 and G2140.	 Character as QTL - Plant growth activity								
5251	qPH-12-2(t) (QPh12)	qPH-12-2(t) (QPh12)	plant height (QTL)-12-2(t)	plant height (QTL)-12-2(t)			12	This QTL controls plant height, being located on chromosome 12 between markers G402 and RG20q.	 Character as QTL - Plant growth activity								
5252	qFLL-1-1(t) (QFll1a)	qFLL-1-1(t) (QFll1a)	flag leaf length (QTL)-1-1(t)	flag leaf length (QTL)-1-1(t)			1	This QTL controls flag leaf length, being located on chromosome 1 between markers RG957 and RG462.	 Character as QTL - Plant growth activity								
5253	qFLL-1-2(t) (QFll1b)	qFLL-1-2(t) (QFll1b)	flag leaf length (QTL)-1-2(t)	flag leaf length (QTL)-1-2(t)			1	This QTL controls flag leaf length, being located on chromosome 1 between markers RZ288 and C131.	 Character as QTL - Plant growth activity								
5254	qFLL-4-1(t) (QFll4)	qFLL-4-1(t) (QFll4)	flag leaf length (QTL)-4-1(t)	flag leaf length (QTL)-4-1(t)			4	This QTL controls flag leaf length, being located on chromosome 4 between markers Ph (phenol reaction) and G379.	 Character as QTL - Plant growth activity								
5255	qFLL-5-1(t) (QFll5)	qFLL-5-1(t) (QFll5)	flag leaf length (QTL)-5-1(t)	flag leaf length (QTL)-5-1(t)			5	This QTL controls flag leaf length, being located on chromosome 5 between markers RG556 and gl1.	 Character as QTL - Plant growth activity								
5256	qFLL-2-2(t) (QFll2)	qFLL-2-2(t) (QFll2)	flag leaf length (QTL)-2-2(t)	flag leaf length (QTL)-2-2(t)			2	This QTL controls flag leaf length, being located on chromosome 2 between markers RG256 and RZ260a.	 Character as QTL - Plant growth activity								
5257	qFLW-2-1(t) (QFlw2)	qFLW-2-1(t) (QFlw2)	flag leaf width (QTL)-2-1(t)	flag leaf width (QTL)-2-1(t)			2	This QTL controls flag leaf width, being located on chromosome 2 between markers C624x and G45.	 Character as QTL - Plant growth activity								
5258	qFLW-3-1(t) (QFlw3)	qFLW-3-1(t) (QFlw3)	flag leaf width (QTL)-3-1(t)	flag leaf width (QTL)-3-1(t)			3	This QTL controls flag leaf width, being located on chromosome 3 between markers RZ474 and C746.	 Character as QTL - Plant growth activity								
5259	qFLW-6-2(t) (QFlw6)	qFLW-6-2(t) (QFlw6)	flag leaf width (QTL)-6-2(t)	flag leaf width (QTL)-6-2(t)			6	This QTL controls flag leaf width, being located on chromosome 6 between markers G200a and RZ667.	 Character as QTL - Plant growth activity								
5260	qFLW-8-2 (QFw8a)	qFLW-8-2 (QFw8a)	flag leaf width (QTL)-8-2(t)	flag leaf width (QTL)-8-2(t)			8	This QTL controls flag leaf width, being located on chromosome 8 between markers G2140 and RZ323a.	 Character as QTL - Plant growth activity								
5261	qFLW-8-3(t) (QFlw8b)	qFLW-8-3(t) (QFlw8b)	flag leaf width (QTL)-6-3(t)	flag leaf width (QTL)-6-3(t)			8	This QTL controls flag leaf width, being located on chromosome 8 between markers L457a and C1073a.	 Character as QTL - Plant growth activity								
5262	qPL-1-4(t) (QPl1a)	qPL-1-4(t) (QPl1a)	panicle length (QTL)-1-4(t)	panicle length (QTL)-1-4(t)			1	This QTL controls panicle length, being located on chromosome 1 between markers RZ14 and C944b.	 Character as QTL - Plant growth activity								
5263	qPL-1-5(t) (QPl1b)	qPL-1-5(t) (QPl1b)	panicle length (QTL)-1-5(t)	panicle length (QTL)-1-5(t)			1	This QTL controls panicle length, being located on chromosome 1 between markers RG140 and RZ288.	 Character as QTL - Plant growth activity								
5264	qPL-2-3(t) (QPl2)	qPL-2-3(t) (QPl2)	panicle length (QTL)-2-3(t)	panicle length (QTL)-2-3(t)			2	This QTL controls panicle length, being located on chromosome 2 between markers G45 and RZ386a.	 Character as QTL - Plant growth activity								
5265	qPL-5-1(t) (QPl5)	qPL-5-1(t) (QPl5)	panicle length (QTL)-5-1(t)	panicle length (QTL)-5-1(t)			5	This QTL controls panicle length, being located on chromosome 5 between markers RG556 and gl1.	 Character as QTL - Plant growth activity								
5266	qPL-6-2(t) (QPl6)	qPL-6-2(t) (QPl6)	panicle length (QTL)-6-2(t)	panicle length (QTL)-6-2(t)			6	This QTL controls panicle length, being located on chromosome 6 between markers RZ762 and C76.	 Character as QTL - Plant growth activity								
5267	qPL-7-2(t) (QPl7)	qPL-7-2(t) (QPl7)	panicle length (QTL)-7-2(t)	panicle length (QTL)-7-2(t)			7	This QTL controls panicle length, being located on chromosome 7 between markers RG678 and G20.	 Character as QTL - Plant growth activity								
5268	qPL-8-2(t) (QPl8)	qPL-8-2(t) (QPl8)	panicle length (QTL)-8-2(t)	panicle length (QTL)-8-2(t)			8	This QTL controls panicle length, being located on chromosome 8 between markers C424b and RZ143.	 Character as QTL - Plant growth activity								
5269	qSN-1-2(t) (QSn1)	qSN-1-2(t) (QSn1)	spikelet number per panicle (QTL)-1-2(t)	spikelet number per panicle (QTL)-1-2(t)			1	This QTL controls spikelet number per panicle, being located on chromosome 1 between markers RZ801 and RZ14.	 Character as QTL - Yield and productivity								
5270	qSN-4-1(t) (QSn4)	qSN-4-1(t) (QSn4)	spikelet number per panicle (QTL)-4-1(t)	spikelet number per panicle (QTL)-4-1(t)			4	This QTl controls spikelet number per panicle, being located on chromosome 4 between markers Ph (phenol staining) and G379.	 Character as QTL - Yield and productivity								
5271	qSN-6-2(t) (QSn6)	qSN-6-2(t) (QSn6)	spikelet number per panicle (QTL)-6-2(t)	spikelet number per panicle (QTL)-6-2(t)			6	This QTL controls spikelet number per panicle, being located on chromosome 6 between markers C235a and G294d.	 Character as QTL - Yield and productivity								
5272	qSN-9-1(t) (QSn9a)	qSN-9-1(t) (QSn9a)	spikelet number per panicle (QTL)-9-1(t)	spikelet number per panicle (QTL)-9-1(t)			9	This QTl controls spikelet number per panicle, being located on chromosome 9 between markers G103b and RZ698.	 Character as QTL - Yield and productivity								
5273	qSN-9-2(t) (QSn9b)	qSN-9-2(t) (QSn9b)	spikelet number per panicle (QTL)-9-2(t)	spikelet number per panicle (QTL)-9-2(t)			9	This QTL controls spikelet number per panicle, being located on chromosome 9 between markers RG451 and RZ404.	 Character as QTL - Yield and productivity								
5274	qSF-2-1(t) (QSf2)	qSF-2-1(t) (QSf2)	spikelet fertility (QTL)-2-1(t)	spikelet fertility (QTL)-2-1(t)			2	This QTL controls spikelet fertility, being located on chromosome 2 between markers CDO718 and RG437.	 Character as QTL - Yield and productivity								
5275	qSF-6-2(t) (QSf6)	qSF-6-2(t) (QSf6)	spikelet fertility (QTL)-6-2(t)	spikelet fertility (QTL)-6-2(t)			6	This QTL controls spikelet fertility, being located on chromosome 6 between markers G294a and G1468b.	 Character as QTL - Yield and productivity								
5276	qSF-7-2(t) (QSf7)	qSF-7-2(t) (QSf7)	spikelet fertility (QTL)-7-2(t)	spikelet fertility (QTL)-7-2(t)			7	This QTL controls spikelet fertility, being located on chromosome 7 between markers CDO497 and BCD855.	 Character as QTL - Yield and productivity								
5277	qSF-12-1(t) (QSf12)	qSF-12-1(t) (QSf12)	spikelet fertility (QTL)-12-1(t)	spikelet fertility (QTL)-12-1(t)			12	This QTL controls spikelet fertility, being located on chromosome 12 between markers RG20q and RG91q.	 Character as QTL - Yield and productivity								
5278	qSD-4-1(t) (qSD4)	qSD-4-1(t) (qSD4)	seed dormancy (QTL)-4-1(t)	seed dormancy (QTL)-4-1(t)			4	This QTL controls seed dormancy, being located on chromosome 4 in the vicinity of marker RM252.	 Seed - Physiological traits - Dormancy								
5279	qSD-7-2(t) (qSD7-1)	qSD-7-2(t) (qSD7-1)	seed dormancy (QTL)-7-2(t)	seed dormancy (QTL)-7-2(t)			7	This QTL controls seed dormancy, being located on chromosome 7 in the vicinity of marker RM180.	 Seed - Physiological traits - Dormancy								
5280	qSD-7-3(t) (qSD7-2)	qSD-7-3(t) (qSD7-2)	seed dormancy (QTL)-7-3(t)	seed dormancy (QTL)-7-3(t)			7	This QTL controls seed dormancy, being located on chromosome 7 in the vicinity of marker RM346.	 Seed - Physiological traits - Dormancy								
5281	qSD-8-1(t) (qSD8)	qSD-8-1(t) (qSD8)	seed dormancy (QTL)-8-1(t)	seed dormancy (QTL)-8-1(t)			8	This QTL controls seed dormancy, being located on chromosome 8 in the vicinity of marker RM531.	 Seed - Physiological traits - Dormancy								
5282	qSD-12-1(t) (qSD12)	qSD-12-1(t) (qSD12)	seed dormancy (QTL)-12-1(t)	seed dormancy (QTL)-12-1(t)			12	This QTL controls seed dormancy, being located on chromosome 12 in the vicinity of marker RM270.	 Seed - Physiological traits - Dormancy								
5283	qSH-3-4(t) (qSH3)	qSH-3-4(t) (qSH3)	shattering (QTL)-3-4(t)	shattering (QTL)-3-4(t)			3	This QTL controls seed shattering, being located on chromosome 3 in the vicinity of marker RM486.	 Seed - Physiological traits - Shattering								
5284	qSH-4-4(t) (qSH4)	qSH-4-4(t) (qSH4)	shattering (QTL)-4-4(t)	shattering (QTL)-4-4(t)			4	This QTL controls seed shattering, being located on chromosome 4 in the vicinity of marker RM471.	 Seed - Physiological traits - Shattering								
5285	qSH-7-2(t) (qSD7)	qSH-7-2(t) (qSD7)	shattering (QTL)-7-2(t)	shattering (QTL)-7-2(t)			7	This QTL controls seed shattering, being located on chromosome 7 in the vicinity of marker RM118.	 Seed - Physiological traits - Shattering								
5286	qSH-8-3(t) (qSH8)	qSH-8-3(t) (qSH8)	shattering (QTL)-8-3(t)	shattering (QTL)-8-3(t)			8	This QTL controls seed shattering, being located on chromosome 8 in the vicinity of marker RM135B.	 Seed - Physiological traits - Shattering								
5287	qAL-4-1(t) (qAL4-1)	qAL-4-1(t) (qAL4-1)	awn length (QTL)-4-1(t)	awn length (QTL)-4-1(t)			4	This QTL controls awn length, being located on chromosome 4 in the vicinity of marker RM471.	 Character as QTL - Plant growth activity								
5288	qAL-4-2(t) (qAL4-2)	qAL-4-2(t) (qAL4-2)	awn length (QTL)-4-2(t)	awn length (QTL)-4-2(t)			4	This QTL controls awn length, being located on chromosome 4 in the vicinity of marker RM252.	 Character as QTL - Plant growth activity								
5289	qAL-8-1(t) (qAL8)	qAL-8-1(t) (qAL8)	awn length (QTL)-8-1(t)	awn length (QTL)-8-1(t)			8	This QTL controls awn length, being located on chromosome 8 in the vicinity of marker RM531.	 Character as QTL - Plant growth activity								
5290	qHCB-4-1(t) (qHCB4)	qHCB-4-1(t) (qHCB4)	black hull (QTL)-4-1(t)	black hull (QTL)-4-1(t)			4	This QTL controls black pigmentaion on hull, being located on chromosome 4 in vicinity of marker RM564A.	 Coloration								
5291	qHCB-7-1(t) (qHCB7)	qHCB-7-1(t) (qHCB7)	black hull (QTL)-7-1(t)	black hull (QTL)-7-1(t)			7	This QTL controls black pigmentation of hull, being located on chromosome 7 in the vicinity of marker RM118.	 Coloration								
5292	qHCR-4-1(t) (qHCR4)	qHCR-4-1(t) (qHCR4)	red hull (QTL)-4-1(t)	red hull (QTL)-4-1(t)			4	This QTl controls red pigmentation of hull, being located on chromosome 4 in the vicinity of marker RM564A.	 Coloration								
5293	qHCR-7-1(t) (qHCR7)	qHCR-7-1(t) (qHCR7)	red hull (QTL)-7-1(t)	red hull (QTL)-7-1(t)			7	This QTL controls red pigmentation of hull, being located on chromosome 7 in the vicinity of marker RM118.	 Coloration								
5294	qHCY-4-1(t) (qHCY4)	qHCY-4-1(t) (qHCY4)	yellow hull (QTL)-4-1(t)	yellow hull (QTL)-4-1(t)			4	This QTL controls yellow pigmentation of hull, being located on chromosome 4 in the vicinity of marker RM564A.	 Coloration								
5295	qPCB-7-1(t) (qPCB7)	qPCB-7-1(t) (qPCB7)	black pericarp (QTL)-7-1(t)	black pericarp (QTL)-7-1(t)			7	This QTL controls black pigmentation of pericarp, being located on chromosome 7 in the vicinity of marker RM5672.	 Coloration								
5296	qPCR-7-1(t) (qPPCR7)	qPCR-7-1(t) (qPPCR7)	red pericarp (QTL)-7-1(t)	red pericarp (QTL)-7-1(t)			7	This QTL controls red pigmentation of pericarp, being located on chromosome 7 in the vicinity of marker RM5672.	 Coloration								
5297	qPCY-7-1(t) (qPCY7)	qPCY-7-1(t) (qPCY7)	yellow pericarp (QTL)-7-1(t)	yellow pericarp (QTL)-7-1(t)			7	This QTL controls yellow pigmentation of pericarp, being located on chromosome 7 in the vicinity of marker RM5672.	 Coloration								
5298	qCCFJ-4-1(t) (qCCFJ-4)	qCCFJ-4-1(t) (qCCFJ-4)	chlorophyll content at flowering (QTL)-4-1(t)	chlorophyll content at flowering (QTL)-4-1(t)			4	This QTL controls chlorophyll content at flowering , being located on chromosome 4 between markers RM119 and RM142.	 Character as QTL - Plant growth activity								
5299	qCCFJ-9-1(t)	qCCFJ-9-1(t)	chlorophyll content at flowering (QTL)-9-1(t)	chlorophyll content at flowering (QTL)-9-1(t)			9	This QTL controls chlorophyll content at flowering, being located on chromosome 9 between markers RM201 and RM108.	 Character as QTL - Plant growth activity								
5300	qCCFJ-9-2(t)	qCCFJ-9-2(t)	chlorophyll content at flowering (QTL)-9-2(t)	chlorophyll content at flowering (QTL)-9-2(t)			9	This QTL controls chlorophyll content at flowering, being located on chromosome 9 between markers RM215 and RM201.	 Character as QTL - Plant growth activity								
5301	qCCAI-9-1(t) (qCCAI-9)	qCCAI-9-1(t) (qCCAI-9)	chlorophyll content at 25 DAF (QTL)-9-1(t)	chlorophyll content at 25 DAF (QTL)-9-1(t)			9	This QTL controls chlorophyll content at 25 days after flowering, being located on chromosome 9 between markers RM242 and RM6543.	 Character as QTL - Plant growth activity								
5302	qCCAJ-9-1(t) (qCCAJ-9)	qCCAJ-9-1(t) (qCCAJ-9)	chlorophyll content at 25 DAF (QTL)-9-1(t)	chlorophyll content at 25 DAF (QTL)-9-1(t)			9	This QTL controls chlorophyll content at 25 days after flowering, being located on chromosome 9 between markers RM108 and RM242.	 Character as QTL - Plant growth activity								
5303	qRCRJ-6-1(t) (qRCRJ-6)	qRCRJ-6-1(t) (qRCRJ-6)	reduction of chorophyll content (QTL)-6-1(t)	reduction of chorophyll content (QTL)-6-1(t)			6	This QTL controls the reduction of chlorophyll content at 25 days after flowering from that at flowering, being located on chromosome 6 between markers RM253 and RM217.	 Character as QTL - Plant growth activity								
5304	qLDPJ-6-1(t) (qLDPJ-6)	qLDPJ-6-1(t) (qLDPJ-6)	late-discoloring leaf no. per panicle (QTL)-61(t)	late-discoloring leaf no. per panicle (QTL)-61(t)			6	This QTL controls late-discoloring leaf number per panicle, being located on chromosome 6 between markers RM402 and RM253.	 Character as QTL - Plant growth activity								
5305	qLDLJ-6-1(t)	qLDLJ-6-1(t)	late-discoloring leaf no. per plant (QTL)-6-1(t)	late-discoloring leaf no. per plant (QTL)-6-1(t)			6	this QTL controls late-discoloring leaf number per plant, being located on chromosome 6 between markers RM402 and RM253.	 Character as QTL - Plant growth activity								
5306	qLDLJ-6-2(t)	qLDLJ-6-2(t)	late-discoloring leaf no. per plant (QTL)-6-2(t)	late-discoloring leaf no. per plant (QTL)-6-2(t)			6	This QTL controls late-discoloring leaf number per plant, being located on chromosome 6 between markers RM136 and RM549.	 Character as QTL - Plant growth activity								
5307	qLDLI-6-3(t)	qLDLI-6-3(t)	late-discoloring leaf no. per plant (QTL)-6-3(t)	late-discoloring leaf no. per plant (QTL)-6-3(t)			6	This QTL controls late-discoloring leaf number per plant, being located on chromosome 6 between markers RM3 and RM136.	 Character as QTL - Plant growth activity								
5308	qLDLI-2-1(t) (qLDLI-2)	qLDLI-2-1(t) (qLDLI-2)	late-discoloring leaf no. per plant (QTL)-2-1(t)	late-discoloring leaf no. per plant (QTL)-2-1(t)			2	This QTL controls late-discoloring leaf number per plant, being located on chromosome 2 between markers RM341 and RM145.	 Character as QTL - Plant growth activity								
5309	qBRT-12-2(t) (brt12a)	qBRT-12-2(t) (brt12a)	basal root thickness (QTL)-12-2(t)	basal root thickness (QTL)-12-2(t)			12	This QTL controls basal root thickness in relation to drought tolerance, being located on chromosome 12 between markers RM101 and RM260.	 Vegetative organ - Root								
5310	qBRT-12-3(t) (brt12b)	qBRT-12-3(t) (brt12b)	basal root thickness (QTL)-12-3(t)	basal root thickness (QTL)-12-3(t)			12	This QTL controls basal root thickness in relation to drought tolernce, being locate on chromosome 12 between markers RM270 and RM235.	 Vegetative organ - Root								
6000	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, MPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S, OsMAPK17-1, MAPK17-1, MAPK12, OsMAPK12	BLAST- AND WOUND- INDUCIBLE MAPK GENE 1	blast- and wound- inducible MAPK gene-1, Blast- and wound-induced MAP kinase 1, Mitogen-activated protein kinase 12, MAP kinase 12, MAP kinase 1, MAP kinase 17	BLAST- AND WOUND-INDUCED MAP KINASE 1		6	EC=2.7.11.24 Q5Z9J0. AF177392. AF194415. FJ628390 (promoter), FJ628391 (5'UTR, splice variant partial cds). KC609087-KC609096 (O. sativa and wild rice species, partial cds). OsMPK12 in Nanda et al. 2018. MAPK12  in Rao et al. 2021, Chen  et al. 2022, Yang  et al. 2023.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os06g0708000	LOC_Os06g49430.2, LOC_Os06g49430.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0009751 - response to salicylic acid stimulus, GO:0009814 - defense response, incompatible interaction, GO:0005524 - ATP binding, GO:0009738 - abscisic acid mediated signaling, GO:0005886 - plasma membrane, GO:0006952 - defense response, GO:0006468 - protein amino acid phosphorylation, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0005739 - mitochondrion, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0000165 - MAPKKK cascade, GO:0004707 - MAP kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000173 - ethylene sensitivity	
6001	CSLF	Csl, OsCslF	CELLULOSE SYNTHASE-LIKE F	cellulose synthase-like gene	CELLULOSE SYNTHASE-LIKE PROTEIN F				 Biochemical character						GO:0016759 - cellulose synthase activity		
6002	FLO4	FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD, cyPPDK, chPPDKB, chOsPPDKB	FLOURY ENDOSPERM 4	"floury endosperm4, floury endosperm 4, pyruvate orthophospate dikinase, \"Pyruvate, phosphate dikinase 1, chloroplastic\", \"Pyruvate, orthophosphate dikinase 1\", pyruvate orthophosphate dikinase, pyruvate orthophosphate dikinase B, cytosolic pyruvate orthophosphate dikinase, orthophosphate dikinase, Pyruvate phosphate dikinase"	PYRUVATE, ORTHOPHOSPHATE DIKINASE 1	flo4	5	EC=2.7.9.1 Q6AVA8. AY427567 (promoter). AJ004966. D87952. GRO:0007172; embryo stage EM6 ; GRO:0007175; embryo stage EM8 ; GRO:0007042; 08-dough stage ; GRO:0007174; embryo stage EM7 ; GRO:0007045; 09-mature grain stage.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Character as QTL - Grain quality,  Vegetative organ - Leaf,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os05g0405000	LOC_Os05g33570.2, LOC_Os05g33570.1	GR:0101188			GO:0006529 - asparagine biosynthetic process, GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0019252 - starch biosynthetic process, GO:0009416 - response to light stimulus, GO:0008610 - lipid biosynthetic process, GO:0009408 - response to heat, GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0050242 - pyruvate, phosphate dikinase activity, GO:0009651 - response to salt stress, GO:0016740 - transferase activity, GO:0005524 - ATP binding, GO:0016301 - kinase activity, GO:0000287 - magnesium ion binding, GO:0016310 - phosphorylation, GO:0010150 - leaf senescence	TO:0000382 - 1000-seed weight, TO:0000196 - amylose content, TO:0000075 - light sensitivity, TO:0000249 - leaf senescence, TO:0000104 - floury endosperm, TO:0000259 - heat tolerance, TO:0000696 - starch content, TO:0006001 - salt tolerance, TO:0000266 - chalky endosperm	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009089 - endosperm , PO:0020110 - scutellum , PO:0007022 - seed imbibition stage , PO:0005360 - aleurone layer , PO:0020039 - leaf lamina , PO:0001054 - 4 leaf senescence stage 
6003	ABA	ABA	ABSCISIC ACID ACCUMULATION	abscisic acid accumulation					 Tolerance and resistance - Stress tolerance								
6004	AID1	aid1, OsAID1, DLN159, OsDLN159	ANTHER INDEHISCENCE 1	anther indehiscence-1, Anther Indehiscence1, DLN repressor 159, DLN motif protein 159			6	PO:0006449; stomium (sensu Poaceae) ; PO:0006446; endothecium (sensu Poaceae) ; PO:0009025; leaf ; PO:0000030; septum. GRO:0007230; stamen stage ST6-5.	 Reproductive organ - Pollination, fertilization, fertility - Sterility	Os06g0181300	LOC_Os06g08290.1	GR:0800010			GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0010152 - pollen maturation, GO:0003700 - transcription factor activity, GO:0009901 - anther dehiscence, GO:0043067 - regulation of programmed cell death, GO:0045449 - regulation of transcription	TO:0000346 - tiller number, TO:0000437 - male sterility, TO:0000053 - pollen sterility, TO:0000245 - pollen free, TO:0000137 - days to heading, TO:0000436 - spikelet sterility	PO:0009025 - vascular leaf , PO:0020101 - stomium , PO:0000030 - septum , PO:0020002 - anther wall endothecium 
6005	ALAAT	alaAT, ALT-1, OsAlaAT1, AlaAT1	ALANINE AMINOTRANSFERASE	alanine aminotransferase, Alanine transaminase 1, alanine-aminotransferase1	ALANINE AMINOTRANSFERASE	osalaat1, alaat1	10	AB007404, AB007405. AY427564 (promoter). a candidate gene for qHNA10 (QTL for N accumulation under high N conditions on chromosome 10). GO:1901698: response to nitrogen compound.	 Biochemical character,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm,  Tolerance and resistance - Stress tolerance	Os10g0390500	LOC_Os10g25130.1				GO:0005507 - copper ion binding, GO:0046686 - response to cadmium ion, GO:0010581 - regulation of starch biosynthetic process, GO:0001666 - response to hypoxia, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0008483 - transaminase activity, GO:0009058 - biosynthetic process, GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity, GO:0009507 - chloroplast, GO:0030170 - pyridoxal phosphate binding, GO:0019481 - L-alanine catabolic process, by transamination, GO:0042594 - response to starvation	TO:0000266 - chalky endosperm, TO:0000015 - oxygen sensitivity, TO:0001007 - coleoptile length, TO:0000696 - starch content, TO:0000104 - floury endosperm, TO:0000196 - amylose content, TO:0000011 - nitrogen sensitivity	PO:0009005 - root , PO:0009051 - spikelet , PO:0004506 - developing seed stage , PO:0009089 - endosperm , PO:0007057 - 0 seed germination stage 
6006	ALDH2A	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5	ALDEHYDE DEHYDROGENASE 2A	aldehyde dehydrogenase 2a, Aldehyde dehydrogenase 2B5	ALDEHYDE DEHYDROGENASE 2A		2	LOC_Os02g49720. AB030939. a mature anther-preferentially expressed gene. mitochondrial ALDH2. GO:0071454: cellular response to anoxia. Rice ALDH2a and ALDH2b genes are orthologues of maize mitochondrial ALDH genes, rf2b and rf2a, respectively (Tsuji et al. 2003). OsALDH2B5 in Simeon et al. 2010.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0730000	LOC_Os02g49720.1, LOC_Os02g49720.2, LOC_Os02g49720.3, LOC_Os02g49720.6, LOC_Os02g49720.7				GO:0009415 - response to water, GO:0009635 - response to herbicide, GO:0009629 - response to gravity, GO:0009413 - response to flooding, GO:0009751 - response to salicylic acid stimulus, GO:0005739 - mitochondrion, GO:0030912 - response to deep water, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors	TO:0002693 - gravity response trait, TO:0000286 - submergence sensitivity, TO:0000058 - herbicide sensitivity	PO:0009066 - anther 
6010	ANACB14	AnacB14	ANACONDA B14	transposon:AnacB14, transposon AnacB14			10	Anaconda, Anaconda element, Anac. The Anaconda elements belong to the Mu superfamily. Database analyses revealed that the loci of 26 of the 27 Anaconda elements in the subspecies japonica are the same as those in the subspecies indica. AB108421.	 Other						GO:0032196 - transposition		
6012	BAR	bar	BIALAPHOS RESISTANCE	bialaphos resistance				glufosinate-resistant rice. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0061472			GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
6013	BLM	blm (=bl2)	BLAST LESION MIMIC GENE	blast lesion mimic gene		blm			 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance						GO:0052319 - regulation of phytoalexin biosynthetic process, GO:0006952 - defense response, GO:0048571 - long-day photoperiodism, GO:0042542 - response to hydrogen peroxide, GO:0009266 - response to temperature stimulus, GO:0010941 - regulation of cell death, GO:0050832 - defense response to fungus	TO:0000432 - temperature response trait, TO:0000074 - blast disease, TO:0002670 - momilactone A content, TO:0000063 - mimic response	PO:0025034 - leaf 
6014	BPH17	Bph17	BROWN PLANTHOPPER RESISTANCE 17	brown planthopper resistance  17			4	this BPH resistance gene was located between two SSR markers RM8213 and RM5953 on the short arm of chromosome 4, with map distances of 3.6 cM and 3.2 cM, respectively.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
6016	BPH19	bph19(t)	BROWN PLANTHOPPER RESISTANCE 19	brown planthopper resistance 19			3		 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
6017	BRD2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1, LHDD10, OsLHDD10, OsD-LDH3, D-LDH3	BRASSINOSTEROID DEFICIENT DWARF 2	brassinosteroid (BR)-deficient dwarf-2, BR-deficient dwarf2, brassinosteroid-deficient dwarf2, rice homolog of Arabidopsis thaliana DIMINUTO/DWARF1, Dim/dwf1 protein, DIMINUTO, DWARF1, Putative Cell elongation protein DIMINUTO, Cell elongation protein Dwarf1, Dimunito/Dwarf1, longer top branch and shorter grain 1, D-lactate dehydrogenase 3	DIM/DWF1 PROTEIN	ltbsg1, lhdd10	10	CA757254, AU030326, AAM01136. OSJNBb0058B20.18. TO:0000740: branch morphology trait. TO:0000929: fruit growth and development trait. TO:0000854: spikelet floret size. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Biochemical character,  Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Coloration - Chlorophyll,  Reproductive organ - Heading date	Os10g0397400	LOC_Os10g25780.3, LOC_Os10g25780.2, LOC_Os10g25780.1				GO:0009507 - chloroplast, GO:0009834 - secondary cell wall biogenesis, GO:0048767 - root hair elongation, GO:0000271 - polysaccharide biosynthetic process, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0005982 - starch metabolic process, GO:0048653 - anther development, GO:0000272 - polysaccharide catabolic process, GO:0005783 - endoplasmic reticulum, GO:0009932 - cell tip growth, GO:0019344 - cysteine biosynthetic process, GO:0009808 - lignin metabolic process, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0009825 - multidimensional cell growth, GO:0048587 - regulation of short-day photoperiodism, flowering, GO:0016126 - sterol biosynthetic process, GO:0016132 - brassinosteroid biosynthetic process, GO:0006084 - acetyl-CoA metabolic process, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0050660 - FAD binding, GO:0050614 - delta24-sterol reductase activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0007275 - multicellular organismal development, GO:0010075 - regulation of meristem growth, GO:0009826 - unidimensional cell growth, GO:0010229 - inflorescence development, GO:0010154 - fruit development, GO:0005634 - nucleus, GO:0009664 - plant-type cell wall organization	TO:0002676 - brassinosteroid content, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000382 - 1000-seed weight, TO:0000137 - days to heading, TO:0000326 - leaf color, TO:0000397 - grain size, TO:0000495 - chlorophyll content, TO:0000357 - growth and development trait, TO:0002688 - leaf lamina joint bending, TO:0000734 - grain length, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001002 - fruit development stage , PO:0000037 - shoot apex 
6019	CDC2-1	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1, CDC20S-1, OsCDC20S-1	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1	Cell division control protein 2 homolog 1, Cyclin-dependent kinase A-1	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1		3	P29618. X60374. CELL DIVISION CONTROL PROTEIN 2, CDC2. EC=2.7.11.22 EC=2.7.11.23 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0118400	LOC_Os03g02680.1, LOC_Os03g02680.2, LOC_Os03g02680.3				GO:0048830 - adventitious root development, GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0009733 - response to auxin stimulus, GO:0046685 - response to arsenic, GO:0007126 - meiosis, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation	TO:0000031 - silicon sensitivity, TO:0000163 - auxin sensitivity, TO:0000350 - cms-hl type	PO:0020094 - plant egg cell 
6020	CDC2-2	cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2, CDKA;1, OsCDKA;1, CDC20S-2, OsCDC20S-2	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 2	Cell division control protein 2 homolog 2, Cyclin-dependent kinase A-2	CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 2		2	P29619. X60375. CELL DIVISION CONTROL PROTEIN 2, CDC2. EC=2.7.11.22 EC=2.7.11.23  CDKA;1 in Zheng at al. 2022. CDC20S-2 in Xu et al. 2023.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0123100	LOC_Os02g03060.1, LOC_Os02g03060.2				GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity	TO:0000350 - cms-hl type	PO:0020094 - plant egg cell 
6025	CPT1	cpt1, OsBTBN2, BTBN2	COLEOPTILE PHOTOTROPISM 1	coleoptile phototropism1, Coleoptile phototropism protein 1, Non-phototropic hypocotyl 3-like protein, NPH3-like protein, NPH3-like, BTB-type E3 ubiquitin ligase N2	COLEOPTILE PHOTOTROPISM PROTEIN 1		2	Os02g0568200. LOC_Os02g35970. Q5KS50. PO:0020033; coleoptile ; PO:0009005; root. GRO:0007047; 02-seedling.	 Vegetative organ - Leaf	Os02g0568200	LOC_Os02g35970.1	GR:0080030			GO:0009638 - phototropism, GO:0009416 - response to light stimulus, GO:0005515 - protein binding, GO:0004871 - signal transducer activity	TO:0000158 - red light sensitivity, TO:0000075 - light sensitivity, TO:0000159 - blue light sensitivity, TO:0002652 - root phototropism, TO:0002650 - phototropism, TO:0002651 - shoot phototropism	PO:0020033 - coleoptile , PO:0009005 - root 
6026	CYCA1;3	cycA1;3, CycA1;3, CYCA1-3	CYCLIN-A1-3	Cyclin-A1-3, G2/mitotic-specific cyclin-A1-3	CYCLIN-A1-3 		12	mitotic cyclins. Q0INT0.	 Biochemical character	Os12g0298950	LOC_Os12g20324.1, LOC_Os12g20324.2, LOC_Os12g20324.3				GO:0051301 - cell division, GO:0000239 - pachytene, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0007135 - meiosis II, GO:0051445 - regulation of meiotic cell cycle, GO:0007140 - male meiosis, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0009556 - microsporogenesis		
6027	CYCB2;1	cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1	CYCLIN-B2-1	Cyclin-B2-1, G2/mitotic-specific cyclin-B2-1, B-type cyclin 2;1, cyclin Oryza sativa1	CYCLIN-B2-1 		4	mitotic cyclins. AB024987. X82035. S49462. Q01J96(indica), Q7XSJ6(japonica).	 Biochemical character	Os04g0563700	LOC_Os04g47580.1				GO:0009739 - response to gibberellin stimulus, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007067 - mitosis, GO:0051301 - cell division, GO:0005634 - nucleus	TO:0000166 - gibberellic acid sensitivity	
6028	CYCB2;2	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2	CYCLIN-B2-2	Cyclin-B2-2, G2/mitotic-specific cyclin-B2-2, B-type cyclin 2;2, cyclin Oryza sativa2	CYCLIN-B2-2 		6	mitotic cyclins. X82036. A2YH60(indica), Q0D9C7(japonica).	 Biochemical character	Os06g0726800	LOC_Os06g51110.1, LOC_Os06g51110.2				GO:0007067 - mitosis, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0009739 - response to gibberellin stimulus, GO:0051301 - cell division	TO:0000166 - gibberellic acid sensitivity	
6031	DBS1	dbs1	DWARFBAMBOO SHOOT 1	dwarf bamboo shoot 1			1	DBS1 encodes a NACK-type kinesin-like protein.The recessive mutant, dbs1, shows severe dwarfism and bamboo-like shoot.MNU induced mutant from Taichung 65	 Seed - Morphological traits - Embryo						GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis		
6032	DGL1	dgl1, dgl1-1, dgl1-2, dgl1-3	DWARF AND GLADIUS LEAF 1	dwarf and gladius leaf-1					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6033	EF5	ef5, ef5*	EARLINESS 5	late heading5			6	Late heading. lateness gene. PO:0009049; inflorescence.	 Reproductive organ - Heading date			GR:0061443			GO:0003700 - transcription factor activity, GO:0009648 - photoperiodism	TO:0000137 - days to heading	PO:0009049 - inflorescence 
6035	ELD1	eld1-1, KOB1	ELONGATION DEFECTIVE 1	elongation defictive 1-1, elongation defective1, KOBITO1		eld1-1, eld1-2			 Biochemical character						GO:0031012 - extracellular matrix, GO:0005618 - cell wall, GO:0016049 - cell growth		
6036	ENL	enl	ENDOSPERMLESS	endospermless					 Seed - Morphological traits - Endosperm						GO:0009790 - embryonic development, GO:0009653 - anatomical structure morphogenesis		
6040	F5	f5, f5-Du, Sb, S24	WIDE COMPATIBILITY GENES	f5 locus from Dular			5	wide compatibility genes. S24, f5-Du and Sb mapped to the same region. (2011)	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009856 - pollination, GO:0009566 - fertilization		
6042	F6	f6, f6-Du, S5, S5-08	WIDE COMPATIBILITY GENES	"f6 allele from \"Dular\", S5 allele from 02428"				wide compatibility genes.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009856 - pollination, GO:0009566 - fertilization		
6043	FSM	fsm	FLATTENED SHOOT MERISTEM	flattered shoot meristem			1	The FSM locus was confined within 12.2 cM on the long arm of chromosome 1 between two markers R1764 and S10526.	 Vegetative organ - Shoot apical meristem(SAM)						GO:0010492 - maintenance of shoot apical meristem identity		
6044	GLR3.1	OsGLR3.2, GLR3.2, OsGLR3.1, OsGLR4.1, GLR4.1	GLUTAMATE RECEPTOR 3.1	Glutamate receptor 3.1, Ligand-gated ion channel 3.1, Glutamate receptor homolog 3.2, GLUTAMATE RECEPTOR-LIKE 3.1, Glutamate receptor 4.1, Glutamate-like receptor 4.1	GLUTAMATE RECEPTOR 3.1	GLR3.1-1, GLR3.1-2, osglr4.1-1, osglr4.1-2, osglr4.1-3	4	GLUTAMATE RECEPTOR-LIKE GENE, glutamate receptor-like gene. Q7XP59. OsGLR3.2 in Singh et al. 2013. OsGLR4.1 in Shi et al. 2022, Zeng et al. 2023. GO:1990170: stress response to cadmium ion.	 Reproductive organ - panicle,  Biochemical character,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os04g0585200	LOC_Os04g49570.1, LOC_Os04g49570.2				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0030288 - outer membrane-bounded periplasmic space, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0006811 - ion transport, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0006950 - response to stress, GO:0046686 - response to cadmium ion, GO:0004970 - ionotropic glutamate receptor activity	TO:0000114 - flooding related trait, TO:0002677 - brassinosteroid sensitivity, TO:0000152 - panicle number, TO:0000455 - seed set percent, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000306 - root thickness, TO:0000382 - 1000-seed weight, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000276 - drought tolerance, TO:0000040 - panicle length, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009010 - seed 
6045	GLUB1	GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B	GLUTELIN B1	Glutelin type-B 1, Glutelin type-B 1 acidic chain, Glutelin type-B 1 basic chain	GLUTELIN B1		2	P14323. AY427569(promoter region). X15833. X54314. GluB-1b  in Wang et al. 2020. GluB-1a in Liu et al. 2023.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os02g0249900	LOC_Os02g15169.1				GO:0045735 - nutrient reservoir activity		PO:0006220 - central endosperm 
6047	GN1A	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a	GRAIN NUMBER 1A	Cytokinin oxidase/dehydrogenase 2, grain number 1a, cytokinin oxidase 2, Grain number 1a/Cytokinin oxidase 2, Grain number 1 a	CYTOKININ  OXIDASE/DEHYDROGENASE 2	Gn1a-Habataki, Gn1a-5150, Gn1a-T1, Gn1a-T2, Gn1a-T3, Gn1a-type 3, Gn1aST-1	1	AB205193. Q4ADV8. BGIOSGA002195. cytokinin oxidase/dehydrogenase. increase the number of reproductive organs. a negative regulator of grain number. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity. GO:1902347: response to strigolactone.	 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0197700 	LOC_Os01g10110.1	GR:0020051			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009735 - response to cytokinin stimulus, GO:0042594 - response to starvation, GO:0010229 - inflorescence development, GO:0048281 - inflorescence morphogenesis, GO:0022900 - electron transport chain, GO:0032940 - secretion by cell, GO:0009651 - response to salt stress, GO:0019139 - cytokinin dehydrogenase activity	TO:0000440 - grain number per plant, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000467 - cell membrane stability, TO:0000382 - 1000-seed weight, TO:0002660 - cytokinin content, TO:0000136 - relative water content, TO:0000167 - cytokinin sensitivity, TO:0000296 - vegetative vigor, TO:0000316 - photosynthetic ability, TO:0000128 - harvest index, TO:0000040 - panicle length, TO:0000052 - primary branching of inflorescence, TO:0000142 - secondary branching of inflorescence, TO:0000590 - grain weight, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000050 - inflorescence branching, TO:0006001 - salt tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000396 - grain yield, TO:0000456 - spikelet number, TO:0000621 - inflorescence development trait, TO:0002759 - grain number	PO:0000230 - inflorescence meristem , PO:0001083 - inflorescence development stage 
6048	GN1B	Gn1b	GRAIN NUMBER 1B	grain number 1b			1	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6049	GN2	Gn2	GRAIN NUMBER 2	grain number 2			4	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6050	GN3	Gn3	GRAIN NUMBER 3	grain number 3			10	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6051	GN4	Gn4	GRAIN NUMBER 4	grain number 4			12	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6052	GN5	Gn5	GRAIN NUMBER 5	grain number 5			12	QTL	 Character as QTL - Yield and productivity						GO:0010229 - inflorescence development		
6054	GPA7	gpa7	GRAINS PER PANICLE 7	grains per panicle			7	EU444082 (Oryza rufipogon). 	 Character as QTL - Yield and productivity						GO:0048281 - inflorescence morphogenesis		
6055	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2, GrxC2;2, OsGrxC2.2, GrxC2.2	GLUTAREDOXIN	glutaredoxin, glutaredoxin 14, CPYC-type Glutaredoxin 2.2	GLUTAREDOXIN		4	D86744, X77150. P55142. OsGrx9 in Esfahani and Shahpiri 2014. OsGRX14 in Garg et al. 2010. OsGrxC2;2 in Morita et al. 2015. OsGrxC2.2 in Liu et al. 2019.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0508300	LOC_Os04g42930.2, LOC_Os04g42930.1				GO:0006979 - response to oxidative stress, GO:0016209 - antioxidant activity, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0045995 - regulation of embryonic development, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0006810 - transport	TO:0000181 - seed weight, TO:0000605 - hydrogen peroxide content, TO:0002657 - oxidative stress, TO:0000064 - embryo related trait, TO:0000189 - embryoless	PO:0004506 - developing seed stage , PO:0020033 - coleoptile , PO:0009010 - seed , PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0005360 - aleurone layer , PO:0009009 - plant embryo 
6056	GS2	OsGS2, GLN2, OsGLN2, RGS31, OsRGS31	GLUTAMINE SYNTHETASE 2	"\"Glutamine synthetase, chloroplastic\", plastidic/chloroplastic glutamine synthase, glutamine synthetase 2, \"Glutamate:ammonia ligase delta, chloroplast\", chloroplastic gluthamine synthetase 2"	GLUTAMINE SYNTHETASE 2		4	EC=6.3.1.2 Glutamate--ammonia ligase. P14655. X14246. D16071. TO:0000794: axillary bud prominence. TO:0000791: axillary bud size. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0659100	LOC_Os04g56400.1, LOC_Os04g56400.4, LOC_Os04g56400.3				GO:0009399 - nitrogen fixation, GO:0009570 - chloroplast stroma, GO:0009507 - chloroplast, GO:0010043 - response to zinc ion, GO:0007584 - response to nutrient, GO:0046688 - response to copper ion, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0006970 - response to osmotic stress, GO:0006542 - glutamine biosynthetic process, GO:0004356 - glutamate-ammonia ligase activity, GO:0010446 - response to alkalinity, GO:0009651 - response to salt stress, GO:0009725 - response to hormone stimulus, GO:0006807 - nitrogen compound metabolic process, GO:0022626 - cytosolic ribosome, GO:0009609 - response to symbiotic bacterium, GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0009635 - response to herbicide, GO:0043200 - response to amino acid stimulus, GO:0048046 - apoplast, GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance, TO:0000480 - nutrient sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0005007 - glufosinate sensitivity, TO:0000351 - zinc sensitivity, TO:0000276 - drought tolerance, TO:0006002 - proline content, TO:0000095 - osmotic response sensitivity, TO:0000481 - alkali sensitivity, TO:0000021 - copper sensitivity	PO:0000025 - root tip , PO:0008039 - stem base , PO:0003011 - root vascular system , PO:0005421 - parenchyma , PO:0000258 - root cortex , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0020121 - lateral root , PO:0009005 - root 
6058	HWG1	hwg1(t)	HYBRID WEAKNESS G1	hybrid weakness g1			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen		
6059	JIOSPR10	JIOsPR10, OsPR10, PR10, OsJiPR10, JiPR10, OsPR10c, PR10c	JASMONATE INDUCIBLE PATHOGENESIS-RELATED CLASS 10 PROTEIN	jasmonate inducible pathogenesis-related class 10 protein	JASMONATE INDUCIBLE PATHOGENESIS-RELATED CLASS 10 PROTEIN		3	AF395880. pathogenesis-related Bet V family protein. PR10 in Rebecca et al. 2010. OsPR10 in Yamada et al. 2017,  Li et al 2017, Yang et al. 2019, Li et al. 2021, Qiu et al. 2022. OsPR10c in Li et al. 2023.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0300400	LOC_Os03g18850.1				GO:0002213 - defense response to insect, GO:0009266 - response to temperature stimulus, GO:0051607 - defense response to virus, GO:0009753 - response to jasmonic acid stimulus, GO:0006950 - response to stress, GO:0050832 - defense response to fungus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009620 - response to fungus, GO:0006952 - defense response, GO:0009607 - response to biotic stimulus, GO:0009416 - response to light stimulus	TO:0000432 - temperature response trait, TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000424 - brown planthopper resistance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease	PO:0009005 - root 
6060	KIDDO	Kiddo	TRANSPOSON MITE KIDDO	transposon MITE Kiddo, transposon:MITE Kiddo, Kiddo element, Transposable Element Kiddo, Kiddo family, Kiddo MITE family, transposable element family Kiddo				Transposal element (MITE family), transposon, MITE family, TRANSPOSON, MITE FAMILY. Thirty-five complete Kiddo sequences were identified (Kiddo-os1 - Kiddo-os35). AF484682.	 Other			GR:0061375			GO:0032196 - transposition		
6061	LD(T)	ld(t)	LACK OF LODICULE	lack of lodicule					 Reproductive organ - Spikelet, flower, glume, awn						GO:0048461 - flower structural organization, GO:0009856 - pollination		
6062	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3	LOW PHYTIC ACID 1	Low phytic acid-1, low phytic acid 1, low PA  1		lpa1, lpa1-1, lpa1-2, lpa1-3	2	low phytic acid content. EU366951, EU366953, EU366954. MH707666.	 Seed - Physiological traits - Storage substances	Os02g0819400	LOC_Os02g57400.3, LOC_Os02g57400.2, LOC_Os02g57400.1	GR:0061376			GO:0009507 - chloroplast, GO:0006793 - phosphorus metabolic process, GO:0009845 - seed germination, GO:0032958 - inositol phosphate biosynthetic process, GO:0043647 - inositol phosphate metabolic process, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0002666 - seed phosphorus content	PO:0009010 - seed , PO:0025034 - leaf , PO:0005360 - aleurone layer , PO:0009005 - root , PO:0009067 - filament , PO:0009047 - stem , PO:0007057 - 0 seed germination stage 
6063	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1	LOW SILICON RICE 1	low silicon rice, Low silicon rice 1, Silicon transporter LSI1, Aquaporin NIP2-1, NOD26-like intrinsic protein 2-1, Silicon transporter LSI1, Low silicon protein 1, NOD26 LIKE INTRINSIC PROTEIN 2;1, low Si uptake, Low Si 1	AQUAPORIN NIP2-1	lsi1	2	Q6Z2T3. GRO:0007140; B-reproductive stage ; GRO:0007139; A-vegetative stage. AB222272. lsi(t) (=low Si uptake) in Arimura et al. 2002. TO:0006054: arsenic concentration. Aquaporins (arsenite transport). GO:1901684: arsenate ion transmembrane transport. TO:0001048: silicon content trait. GO:0035445: borate transmembrane transport. TO:1000053: shoot system boron content. TO:1000026: root system arsenic content. GO:0035864: response to potassium ion.	 Tolerance and resistance - Insect resistance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0745100	LOC_Os02g51110.1	GR:0080009,GR:0061478			GO:0005215 - transporter activity, GO:0009609 - response to symbiotic bacterium, GO:0009409 - response to cold, GO:0034021 - response to silicon dioxide, GO:0046685 - response to arsenic, GO:0005886 - plasma membrane, GO:0015104 - antimonite transmembrane transporter activity, GO:0015115 - silicate transmembrane transporter activity, GO:0048226 - Casparian strip, GO:0009414 - response to water deprivation, GO:0010038 - response to metal ion, GO:0042594 - response to starvation, GO:0009610 - response to symbiotic fungus, GO:0015708 - silicate transport, GO:0010035 - response to inorganic substance, GO:0010269 - response to selenium ion, GO:0002213 - defense response to insect, GO:0046688 - response to copper ion, GO:0016021 - integral to membrane, GO:0048830 - adventitious root development, GO:0009651 - response to salt stress, GO:0080027 - response to herbivore, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus	TO:0000201 - panicle color, TO:0000032 - selenium sensitivity, TO:0000163 - auxin sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000261 - insect damage resistance, TO:0006001 - salt tolerance, TO:0000396 - grain yield, TO:0000007 - sulfur sensitivity, TO:0000021 - copper sensitivity, TO:0000031 - silicon sensitivity, TO:0000303 - cold tolerance	PO:0020121 - lateral root , PO:0020127 - primary root , PO:0005772 - exodermis , PO:0009005 - root , PO:0005059 - root endodermis 
6064	LTP1	Ltp1	LIPID TRANSFER PROTEIN 1	lipid transfer protein	LIPID TRANSFER PROTEIN 1			PO:0009011; plant structure ; PO:0000003; whole plant ; PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0061377			GO:0006952 - defense response, GO:0008289 - lipid binding	TO:0000074 - blast disease, TO:0000164 - stress trait	PO:0009025 - vascular leaf , PO:0000003 - whole plant , PO:0009011 - plant structure 
6065	MICRON	Micron	MICROSATELLITE-TARGETING TRANSPOSABLE ELEMENT	microsatellite-targeting transposable element					 Other						GO:0032196 - transposition		
6066	_	nad9, nad9-2	_	NADH dehydrogenase subunit 9			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99370 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER13002, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). nad9-2 in JN861111 and JN861112.	 Biochemical character						GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion		
6076	ONAC300	ONAC077, NAC77, OsNAC77, NAC300, OsNAC300, ONAC132, NAC132, OsNAC132, DLN250, OsDLN250	NAC DOMAIN-CONTAINING PROTEIN 300	NAC domain-containing protein 30, NAC domain-containing protein 77, NAC domain-containing protein 132, DLN repressor 250, DLN motif protein 250	NAC DOMAIN-CONTAINING PROTEIN 300		12	NAM subgroup of NAC-family genes. AB182278. Q5CD17. GO:0098542: defense response to other organism. GO:1900140: regulation of seedling development.	 Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity	Os12g0123800	LOC_Os12g03050.1				GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0006952 - defense response, GO:0009845 - seed germination, GO:0009413 - response to flooding, GO:0009629 - response to gravity, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0009628 - response to abiotic stimulus, GO:0051607 - defense response to virus, GO:0045449 - regulation of transcription	TO:0002693 - gravity response trait, TO:0000112 - disease resistance, TO:0000168 - abiotic stress trait, TO:0000148 - viral disease resistance, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000020 - black streak dwarf virus resistance	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
6079	AAT	OsAAT	ASPARATE AMINOTRANSFERASE	asparate aminotransferase					 Biochemical character						GO:0008483 - transaminase activity, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity		
6080	ABA1	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP	ABA DEFICIENT 1	Zeaxanthin epoxidase 1, zeaxanthin epoxidase, abscisic acid-deficient 1, zeaxanthin cyclooxygenases	ZEAXANTHIN EPOXIDASE 1	Osaba1, Osaba1-6, Osaba1-13, Osaba1-14, Osaba1-15	4	AB050884. ABA2 in Jin et al. 2018, Shen et al. 2019. GO:1990069: stomatal opening. GO:1901827: zeaxanthin biosynthetic process.	 Coloration - Others,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Coloration,  Vegetative organ - Leaf,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os04g0448900	LOC_Os04g37619.1, LOC_Os04g37619.2	GR:0101186			GO:0016491 - oxidoreductase activity, GO:0009536 - plastid, GO:0009737 - response to abscisic acid stimulus, GO:0009540 - zeaxanthin epoxidase activity, GO:0007623 - circadian rhythm, GO:0051607 - defense response to virus, GO:0010378 - temperature compensation of the circadian clock, GO:0004497 - monooxygenase activity, GO:0009266 - response to temperature stimulus, GO:0042742 - defense response to bacterium, GO:0009738 - abscisic acid mediated signaling, GO:0010118 - stomatal movement, GO:0016117 - carotenoid biosynthetic process, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0008152 - metabolic process, GO:0009651 - response to salt stress, GO:0009688 - abscisic acid biosynthetic process, GO:0006725 - cellular aromatic compound metabolic process, GO:0022900 - electron transport chain, GO:0016123 - xanthophyll biosynthetic process	TO:0000619 - vivipary, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000135 - leaf length, TO:0000207 - plant height, TO:0000203 - bacterial leaf streak disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000227 - root length, TO:0000432 - temperature response trait, TO:0002667 - abscisic acid content, TO:0000478 - abscisic acid concentration, TO:0000522 - stomatal conductance, TO:0000175 - bacterial blight disease resistance, TO:0000326 - leaf color, TO:0000148 - viral disease resistance, TO:0006001 - salt tolerance, TO:0000131 - leaf water potential, TO:0000020 - black streak dwarf virus resistance	PO:0009006 - shoot system , PO:0009025 - vascular leaf 
6084	AGAP	OsAGAP, OsC2DP13, C2DP13	ARF-GTPASE-ACTIVATING PROTEIN	ARF-GTPase-activating protein, adenosine diphosphate ribosylation factor-GTPase-activating protein, C2 Domain-Containing Protein 13	ARF-GTPASE-ACTIVATING PROTEIN		2		 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Biochemical character	Os02g0198300	LOC_Os02g10480.1, LOC_Os02g10480.2, LOC_Os02g10480.3, LOC_Os02g10480.6, LOC_Os02g10480.5, LOC_Os02g10480.4				GO:0005634 - nucleus, GO:0005096 - GTPase activator activity, GO:0005543 - phospholipid binding, GO:0008060 - ARF GTPase activator activity, GO:0005737 - cytoplasm	TO:0000592 - 1000-dehulled grain weight, TO:0002759 - grain number, TO:0000207 - plant height, TO:0000449 - grain yield per plant, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000040 - panicle length	PO:0025034 - leaf , PO:0009005 - root , PO:0009066 - anther , PO:0009039 - glume , PO:0009047 - stem , PO:0020103 - flag leaf 
6085	ALS	OsALS, AHAS, OsALS1, ALS1	ACETOLACTATE SYNTHASE	acetolactate synthase, acetohydroxyacid synthase, Acetolactate synthase 1	ACETOLACTATE SYNTHASE	OsmALS	2	AB049822, AB049823, AY885673, AY885674, AY885675. Q6K2E8.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0510200	LOC_Os02g30630.1, LOC_Os02g30630.2				GO:0009507 - chloroplast, GO:0009635 - response to herbicide, GO:0030976 - thiamin pyrophosphate binding, GO:0050660 - FAD binding, GO:0000287 - magnesium ion binding, GO:0003984 - acetolactate synthase activity, GO:0005948 - acetolactate synthase complex, GO:0009097 - isoleucine biosynthetic process, GO:0009099 - valine biosynthetic process	TO:0000058 - herbicide sensitivity	
6088	APT2	OsAPT2, APRT, OsAPRT	ADENINE PHOSPHORIBOSYL TRANSFERASE 2	adenine phosphoribosyl transferase, adenine phosphoribosyltransferase	ADENINE PHOSPHORIBOSYL TRANSFERASE 2		4	AY238894. BGIOSGA016724. Since this rice APRT is similar to the type 2 APRTs found in wheat and Arabidopsis, it was named OsAPT2 (Zhou et al. 2006).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os04g0504000	LOC_Os04g42520.1, LOC_Os04g42520.2, LOC_Os04g42520.3				GO:0006168 - adenine salvage, GO:0005737 - cytoplasm, GO:0009116 - nucleoside metabolic process, GO:0003999 - adenine phosphoribosyltransferase activity, GO:0005886 - plasma membrane	TO:0000067 - genic male sterility-thermo sensitive	
6089	ARF1	OsARF1, arf1, OsARF23, ARF23	AUXIN RESPONSE FACTOR 1	auxin response factor-1, auxin response factor 1, auxin response factor-23, auxin response factor 23	AUXIN RESPONSE FACTOR 1	osarf1, osarf23	11	AJ306306. putative transcription factor. A2ZET6(indica), Q2R3F5 (japonica). AK071997. PO:0000003; whole plant. OsARF23 in Li et al. 2014, Gan et al. 2015, Shafiq et al. 2017, Guo et al. 2019, Li et al. 2021, Guo et al. 2023, Chen et al. 2019. Auxin response factor 2 in Castano-Duque et al. 2021. GO:1990110: callus formation.	 Other,  Tolerance and resistance - Stress tolerance	Os11g0523800	LOC_Os11g32110.4, LOC_Os11g32110.3, LOC_Os11g32110.2, LOC_Os11g32110.1				GO:0009734 - auxin mediated signaling pathway, GO:0046983 - protein dimerization activity, GO:0009753 - response to jasmonic acid stimulus, GO:0042594 - response to starvation, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003677 - DNA binding	TO:0000259 - heat tolerance, TO:0000428 - callus induction, TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0000003 - whole plant 
6090	BISAMT1	OsBISAMT1	BENZOTHIADIAZOLE-INDUCED SAMT1	benzothiadiazole-induced SAMT1, benzothiadiazole-induced S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase 1, BTH-induced S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase 1	BENZOTHIADIAZOLE-INDUCED SAMT1		11	AY524975.	 Tolerance and resistance - Stress tolerance	Os11g0256900	LOC_Os11g15040.5, LOC_Os11g15040.4, LOC_Os11g15040.3, LOC_Os11g15040.2, LOC_Os11g15040.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009863 - salicylic acid mediated signaling pathway, GO:0032259 - methylation, GO:0008168 - methyltransferase activity		
6091	BLE2	OsBLE2	BRASSINOLIDE ENHANCED GENE 2	brassinolide (BL)-enhanced gene 2, BLE2 protein	BLE2 PROTEIN 		7	AB072978.	 Tolerance and resistance - Stress tolerance	Os07g0650600	LOC_Os07g45570.1				GO:0009741 - response to brassinosteroid stimulus		
6092	BP73	BP-73, OsBP-73, Riaa1, Os-BP-73	BINDING PROTEIN 73	binding protein-73, SAP-like protein BP-73	BINDING PROTEIN 73		3	Q8L4E7. the rice homolog of A. thaliana RHON1. KC610878-KC610890 (O. sativa and wild rice species, partial cds).	 Other	Os03g0183100	LOC_Os03g08480.1, LOC_Os03g08480.2				GO:0016020 - membrane, GO:0006353 - transcription termination, GO:0003677 - DNA binding, GO:0040008 - regulation of growth, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0006754 - ATP biosynthetic process, GO:0005524 - ATP binding, GO:0003715 - transcription termination factor activity		
6097	CBL1	OsCBL1, Os-CBL1	CALCINEURIN B-LIKE PROTEIN 1	Calcineurin B-like protein 1, Calcineurin B-Like protein1	CALCINEURIN B-LIKE PROTEIN 1		10	Q7XC27. DQ201195. TO:0020098: nitrate sensitivity. GO:1900140: regulation of seedling development. TO:0020093: nitrogen content. TO:0020094: nitrate content. TO:0020100: nitrate uptake. GO:0090548: response to nitrate starvation. GO:0090352: regulation of nitrate assimilation.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0564800	LOC_Os10g41510.1				GO:0031225 - anchored to membrane, GO:0051607 - defense response to virus, GO:0006995 - cellular response to nitrogen starvation, GO:0010600 - regulation of auxin biosynthetic process, GO:0042594 - response to starvation, GO:0009684 - indoleacetic acid biosynthetic process, GO:0048527 - lateral root development, GO:0005509 - calcium ion binding, GO:0005773 - vacuole, GO:0042128 - nitrate assimilation	TO:0000011 - nitrogen sensitivity, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000571 - shoot fresh weight, TO:0001032 - relative panicle number, TO:0001034 - relative plant height, TO:0000457 - total biomass yield, TO:0000578 - root fresh weight, TO:0000514 - potassium uptake, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
6098	CBL10	OsCBL10	CALCINEURIN B-LIKE PROTEIN 10	Calcineurin B-like protein 10	CALCINEURIN B-LIKE PROTEIN 10		1	Q3HRN7. DQ201204. LOC_Os01g51420.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0711500	LOC_Os01g51420.1				GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000114 - flooding related trait	
6099	CBL2	OsCBL2	CALCINEURIN B-LIKE PROTEIN 2	Calcineurin B-like protein 2	CALCINEURIN B-LIKE PROTEIN 2		12	Q3HRP5. DQ201196..	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0597000	LOC_Os12g40510.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0016020 - membrane, GO:0005509 - calcium ion binding, GO:0009705 - plant-type vacuole membrane, GO:0022626 - cytosolic ribosome, GO:0012505 - endomembrane system, GO:0032578 - aleurone grain membrane, GO:0005773 - vacuole	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
6100	CBL3	OsCBL3	CALCINEURIN B-LIKE PROTEIN 3	Calcineurin B-like protein 3	CALCINEURIN B-LIKE PROTEIN 3		3	Q75LU8. DQ201197.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0626800	LOC_Os03g42840.1				GO:0009414 - response to water deprivation, GO:0022626 - cytosolic ribosome, GO:0009705 - plant-type vacuole membrane, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0012505 - endomembrane system	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
6101	SOS3	CBL4, OsCBL4, OsSOS3	SALT OVERLY SENSITIVE 3	Calcineurin B-like protein 4, salt overly sensitive 3	CALCINEURIN B-LIKE PROTEIN 4		5	Q75KU4. DQ201198.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0534400	LOC_Os05g45810.1				GO:0005509 - calcium ion binding, GO:0009725 - response to hormone stimulus, GO:0005513 - detection of calcium ion, GO:0005886 - plasma membrane, GO:0031225 - anchored to membrane, GO:0009409 - response to cold, GO:0042539 - hypotonic salinity response, GO:0030007 - cellular potassium ion homeostasis, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation	TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0025034 - leaf 
6102	CBL5	OsCBL5	CALCINEURIN B-LIKE PROTEIN 5	Calcineurin B-like protein 5, calcineurin B subunit protein 5	CALCINEURIN B-LIKE PROTEIN 5	oscbl5, cr-cbl5	1	Q3HRP2. DQ201199, CA759698. FJ693712. TO:0000975: grain width.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Morphological traits - Grain shape	Os01g0598200	LOC_Os01g41510.1				GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009740 - gibberellic acid mediated signaling, GO:0042539 - hypotonic salinity response, GO:0005509 - calcium ion binding, GO:0030307 - positive regulation of cell growth, GO:0030007 - cellular potassium ion homeostasis, GO:0016020 - membrane, GO:0005513 - detection of calcium ion	TO:0002675 - gibberellic acid content, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000207 - plant height, TO:0000146 - seed length, TO:0000382 - 1000-seed weight, TO:0000181 - seed weight, TO:0000397 - grain size, TO:0020034 - glume width, TO:0000391 - seed size, TO:0000590 - grain weight, TO:0020033 - glume length	PO:0009039 - glume , PO:0009010 - seed 
6103	CBL6	OsCBL6	CALCINEURIN B-LIKE PROTEIN 6	Calcineurin B-like protein 6	CALCINEURIN B-LIKE PROTEIN 6		12	Q3HRP1. DQ201200, CA998498, CA766361. LOC_Os12g06510.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0162400	LOC_Os12g06510.1, LOC_Os12g06510.2, LOC_Os12g06510.3				GO:0005509 - calcium ion binding		
6104	CBL7	OsCBL7	CALCINEURIN B-LIKE PROTEIN 7	Calcineurin B-like protein 7	CALCINEURIN B-LIKE PROTEIN 7		2	Q3HRP0. DQ201201.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0291000	LOC_Os02g18880.1				GO:0005509 - calcium ion binding, GO:0009409 - response to cold, GO:0005513 - detection of calcium ion, GO:0019722 - calcium-mediated signaling, GO:0005886 - plasma membrane, GO:0031225 - anchored to membrane	TO:0000303 - cold tolerance	
6105	CBL8	OsCBL8	CALCINEURIN B-LIKE PROTEIN 8	Calcineurin B-like protein 8	CALCINEURIN B-LIKE PROTEIN 8	oscbl8-48, oscbl8-51	2	Q3HRN9. DQ201202. GO:0098542: defense response to other organism. GO:1900140: regulation of seedling development.	 Vegetative organ - Root,  Biochemical character,  Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0291400	LOC_Os02g18930.1				GO:0031225 - anchored to membrane, GO:0009408 - response to heat, GO:0010187 - negative regulation of seed germination, GO:0009409 - response to cold, GO:0005513 - detection of calcium ion, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0016020 - membrane	TO:0000352 - plant dry weight, TO:0000571 - shoot fresh weight, TO:0000578 - root fresh weight, TO:0000227 - root length, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000112 - disease resistance, TO:0000430 - germination rate, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000207 - plant height	
6106	CBL9	OsCBL9	CALCINEURIN B-LIKE PROTEIN 9	Calcineurin B-like protein 9	CALCINEURIN B-LIKE PROTEIN 9		1	Q3HRN8. DQ201203. LOC_Os01g39770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0579600	LOC_Os01g39770.1, LOC_Os01g39770.2, LOC_Os01g39770.3				GO:0005509 - calcium ion binding		
6107	CC1	OsCc1, OsCc-1	CYTOCHROME C 1	cytochrome c	CYTOCHROME C 1		5	LOC_Os05g34770. AF399666. A2Y4S9(indica), Q0DI31(japonica). M63704. D10421. D15999.	 Biochemical character	Os05g0420600	LOC_Os05g34770.1				GO:0005759 - mitochondrial matrix, GO:0009055 - electron carrier activity, GO:0006810 - transport, GO:0070469 - respiratory chain, GO:0020037 - heme binding, GO:0022900 - electron transport chain		
6111	CDPK13	OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2	CALCIUM-DEPENDENT PROTEIN KINASE 13	calcium dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 13		4	AL662957, AL662987, AB042550. OsCDPK7 in Li et al. 2017, Zhang et al. 2021. GO:0072593: reactive oxygen species metabolic process.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0584600	LOC_Os04g49510.1, LOC_Os04g49510.2, LOC_Os04g49510.3, LOC_Os04g49510.4				GO:0009409 - response to cold, GO:0019722 - calcium-mediated signaling, GO:0010618 - aerenchyma formation, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0010857 - calcium-dependent protein kinase activity, GO:0009628 - response to abiotic stimulus, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0000258 - root cortex 
6113	CESA7	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7	CELLULOSE SYNTHASE A7	Cellulose synthase A catalytic subunit 7 [UDP-forming], Cellulose synthase A catalytic subunit 7	CELLULOSE SYNTHASE A7	cesa7	10	CELLULOSE SYNTHASE CATALYTIC SUBUNIT. Cellulose synthase catalytic subunit. EC=2.4.1.12 Q9AV71. GO:1901698: response to nitrogen compound. TO:0000993: cellulose content. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Vegetative organ - Culm,  Biochemical character	Os10g0467800	LOC_Os10g32980.1				GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0005515 - protein binding, GO:0009834 - secondary cell wall biogenesis, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0005886 - plasma membrane, GO:0009642 - response to light intensity, GO:0002213 - defense response to insect, GO:0009531 - secondary cell wall, GO:0009723 - response to ethylene stimulus, GO:0016020 - membrane, GO:0007047 - cell wall organization	TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000424 - brown planthopper resistance, TO:0000173 - ethylene sensitivity, TO:0000640 - total root number, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009047 - stem , PO:0000025 - root tip 
6115	CHIA1;175	OsChia1;175, PC, Cht7, OsChia1d, Chia1d	CLASS I CHITINASE	chitinase 1;175, pistil-specific chitinase, Chitinase7, Chitinase 7, Chitinase-7, Pathogenesis related (PR)-3 chitinase 7, Class I chitinase d, Class III chitinase homologues (cDNA)-3	CLASS I CHITINASE		5	AB012855, AB018248. class I chitinase. PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q9SAY3(indica). Q7Y1Z1(japonica). 	 Biochemical character	Os05g0399700	LOC_Os05g33150.1	GR:0061297,GR:0061244			GO:0016998 - cell wall macromolecule catabolic process, GO:0006952 - defense response, GO:0008061 - chitin binding, GO:0004568 - chitinase activity, GO:0006032 - chitin catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0051707 - response to other organism, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008843 - endochitinase activity		
6116	CK1	OsCK1, CIPK31, OsCIPK31, Os-CIPK3, OsSnRK3.11, SnRK3.11	CIPK-LIKE PROTEIN 1	CBL-interacting protein kinase 31, CIPK-like protein 1, Sucrose nonfermenting-1-related protein kinase 3.11, calcineurin B-like interacting protein kinase 31	CIPK-LIKE PROTEIN 1		3	cold inducible gene. EC=2.7.11.1 Q6X4A2. Os-CIPK3 in Li et al. 2014, Yu et al. 2022. KC610977-KC610989 (O. sativa and wild rice species, partial cds). GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0319400	LOC_Os03g20380.8, LOC_Os03g20380.7, LOC_Os03g20380.6, LOC_Os03g20380.1, LOC_Os03g20380.2, LOC_Os03g20380.3, LOC_Os03g20380.4, LOC_Os03g20380.5				GO:0007165 - signal transduction, GO:0010105 - negative regulation of ethylene mediated signaling pathway, GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0005509 - calcium ion binding, GO:0005739 - mitochondrion, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0005524 - ATP binding	TO:0000255 - sheath blight disease resistance	
6117	CP1	OsCP1, Os CP1	CYSTEINE PROTEASE 1	cysteine protease1, Cysteine protease 1, Cys protease 1	CYSTEINE PROTEASE 1		4	EC=3.4.22.- Q7XR52. a Homologue of AtSAG12.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0670500	LOC_Os04g57490.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0030154 - cell differentiation, GO:0048653 - anther development, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0010446 - response to alkalinity, GO:0009908 - flower development, GO:0006508 - proteolysis	TO:0000481 - alkali sensitivity	PO:0001004 - anther development stage 
6118	CUC3	OsCUC3, ONAC107, NAC107, DLN214, OsDLN214	CUP-SHAPED COTYLEDON 3	cup-shaped cotyledon 3, NAC domain-containing protein 107, CUP-SHAPED COTYLEDON3, DLN repressor 214, DLN motif protein 214		oscuc3, oscuc3-1	8	the homolog of Arabidopsis CUC3. TO:0000748: leaf morphology trait. GO:1902182: shoot apical meristem development. PO:0025607: vegetative shoot system. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Embryo,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0511200	LOC_Os08g40030.1				GO:0045449 - regulation of transcription, GO:0048366 - leaf development, GO:0048508 - embryonic meristem development, GO:0003677 - DNA binding, GO:0009790 - embryonic development, GO:0010492 - maintenance of shoot apical meristem identity, GO:0010199 - organ boundary specification between lateral organs and the meristem, GO:0009791 - post-embryonic development	TO:0006020 - shoot apical meristem development, TO:0000225 - stamen number, TO:0000655 - leaf development trait	PO:0001050 - leaf development stage , PO:0025395 - floral organ , PO:0020104 - leaf sheath , PO:0009009 - plant embryo , PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0009049 - inflorescence , PO:0020142 - stem internode , PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0009055 - bract 
6120	DOS	OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4	DELAY OF THE ONSET OF SENESCENCE	delay of the onset of senescence, Zinc finger CCCH domain-containing protein 2, Protein DELAY OF THE ONSET OF SENESCENCE, Tandem zinc finger protein 2	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2		1	LOC_Os01g09620. AP002746. Q9FU27. PO:0000017; leaf primordium ; PO:0009049; inflorescence ; PO:0006079; shoot meristem ; PO:0009025; leaf. GRO:0007150; 5.2-late booting stage ; GRO:0007029; 07-linear grain-filling. HQ858837. C3H transcription factor.	 Coloration - Chlorophyll,  Heterochrony	Os01g0192000	LOC_Os01g09620.1, LOC_Os01g09620.2	GR:0080029			GO:0009737 - response to abscisic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0010150 - leaf senescence	TO:0000615 - abscisic acid sensitivity, TO:0000249 - leaf senescence, TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content, TO:0000227 - root length, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0000447 - filled grain number, TO:0002616 - flowering time	PO:0000017 - vascular leaf primordium , PO:0006079 - shoot meristem , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
6121	DR8	OsDR8, OsXNP, FOXRED1	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 8	pathogen-induced defense-responsive protein 8, defenseresponsive gene 8, XopNKXO85 binding protein, FAD dependent oxidoreductase 1, FAD dependent oxidoreductase domain containing protein 1, Defence-response protein 8	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 8 	OsDR8-93, OsDR8-Nip	7	disease resistance-responsive gene. DQ176424.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0529600	LOC_Os07g34570.1, LOC_Os07g34570.2				GO:0051607 - defense response to virus, GO:0009409 - response to cold, GO:0006952 - defense response, GO:0009228 - thiamin biosynthetic process	TO:0000303 - cold tolerance, TO:0000148 - viral disease resistance	
6122	DRP3A	OsDRP3A	DYNAMIN RELATED PROTEIN 3A	dynamin-related protein 3A	DYNAMIN RELATED PROTEIN 3A				 Biochemical character						GO:0003374 - dynamin polymerization involved in mitochondrial fission, GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity		
6123	DRP3B	OsDRP3B	DYNAMIN RELATED PROTEIN 3B	dynamin-related protein 3B	DYNAMIN RELATED PROTEIN 3B				 Biochemical character						GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity, GO:0003374 - dynamin polymerization involved in mitochondrial fission		
6124	EBP-89	OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76	EREBP TRANSCRIPTION FACTOR	EREBP transcription factor, ethylene response factor 60, APETALA2/ethylene-responsive element binding protein 27, DLN repressor 76, DLN motif protein 76	EREBP TRANSCRIPTION FACTOR	ebp89.1, ebp89.2	3	AJ312199.	 Seed - Physiological traits - Storage substances,  Other,  Tolerance and resistance - Stress tolerance	Os03g0182800	LOC_Os03g08460.1	GR:0061379			GO:0032885 - regulation of polysaccharide biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus	TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000196 - amylose content, TO:0000173 - ethylene sensitivity	PO:0001170 - seed development stage 
6125	EIL1	OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a, OsEIL1b, EIL1b	ETHYLENE INSENSITIVE-LIKE GENE 1	EIN3-like protein 1, ethylene-insensitive 3, ETHYLENE INSENSITIVE3-LIKE 1, EIN3-LIKE 1, EIN3-like 1, EIN3-like protein 1A, EIN3-like protein 1B	EIN3-LIKE PROTEIN 1	oseil1	3	Q8W3M0. AB074971. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. EIN3 in Lin et al. 2005 and Kakuraba et al. 2016. GO:0090351: seedling development. OsEIL1a in Kurota et al. 2018. OsEIL1b in Mao et al. 2006. TO:0001041: root yield.	 Other,  Tolerance and resistance - Stress tolerance,  Seed,  Vegetative organ - Leaf,  Vegetative organ - Root	Os03g0324200	LOC_Os03g20780.1				GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus, GO:0048364 - root development, GO:0009873 - ethylene mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0010601 - positive regulation of auxin biosynthetic process, GO:0003677 - DNA binding, GO:0010150 - leaf senescence, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000143 - relative biomass, TO:0000249 - leaf senescence, TO:0000516 - relative root length, TO:0000653 - seed development trait, TO:0000043 - root anatomy and morphology trait, TO:0001007 - coleoptile length, TO:0000327 - biomass yield, TO:0000620 - embryo development trait, TO:0000173 - ethylene sensitivity, TO:0000227 - root length, TO:0000656 - root development trait	PO:0001054 - 4 leaf senescence stage , PO:0001031 - 4 root elongation stage 
6126	EIL2	OsEIL2	ETHYLENE INSENSITIVE-LIKE GENE 2	EIN3-like protein 2, ETHYLENE INSENSITIVE3-LIKE 2, EIN3-LIKE 2	EIN3-LIKE PROTEIN 2 	eil2	7	ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. AB074972. HQ858833. EIL transcription factor. GO:1901001: negative regulation of response to salt stress. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. GO:2000377: regulation of reactive oxygen species metabolic process.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Other	Os07g0685700	LOC_Os07g48630.2, LOC_Os07g48630.1				GO:0009873 - ethylene mediated signaling pathway, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus	TO:0001007 - coleoptile length, TO:0000227 - root length, TO:0000173 - ethylene sensitivity, TO:0000516 - relative root length, TO:0000605 - hydrogen peroxide content, TO:0000429 - salt sensitivity	PO:0020033 - coleoptile , PO:0007030 - seedling shoot emergence stage , PO:0007045 - coleoptile emergence stage , PO:0007131 - seedling development stage 
6127	EIL3	OsEIL3	ETHYLENE INSENSITIVE-LIKE GENE 3	EIN3-like protein 3, ETHYLENE INSENSITIVE3-LIKE 3, EIN3-LIKE 3	EIN3-LIKE PROTEIN 3 		9	ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3.	 Other,  Tolerance and resistance - Stress tolerance	Os09g0490200	LOC_Os09g31400.1				GO:0009414 - response to water deprivation, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000276 - drought tolerance	
6128	EIL4	OsEIL4	ETHYLENE INSENSITIVE-LIKE GENE 4	EIN3-like protein 4, ETHYLENE INSENSITIVE3-LIKE 4, EIN3-LIKE 4	EIN3-LIKE PROTEIN 4 		8	LOC_Os08g39830. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3.	 Other	Os08g0508700	LOC_Os08g39830.1, LOC_Os08g39830.2				GO:0009723 - response to ethylene stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
6129	EIL5	OsEIL5	ETHYLENE INSENSITIVE-LIKE GENE 5	EIN3-like protein 5, ETHYLENE INSENSITIVE3-LIKE 5, EIN3-LIKE 5	EIN3-LIKE PROTEIN 5 		2	LOC_Os02g36510. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. AP005116.	 Other	Os02g0574800	LOC_Os02g36510.1				GO:0003700 - transcription factor activity, GO:0009723 - response to ethylene stimulus		
6130	EIL6	OsEIL6	ETHYLENE INSENSITIVE-LIKE GENE 6	EIN3-like protein 6, ETHYLENE INSENSITIVE3-LIKE 6, EIN3-LIKE 6	EIN3-LIKE PROTEIN 6 		4	LOC_Os04g38400. ethylene insensitive-like gene, rice homolog of the Arabidopsis EIN3. AL606636 (OSJNBa0036B21.5).	 Other	Os04g0456900	LOC_Os04g38400.1				GO:0009723 - response to ethylene stimulus, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
6131	ENT1	OsENT1	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 1	equilibrative nucleoside transporter	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 1		8	AB201113.	 Vegetative organ - Root,  Biochemical character	Os08g0205200	LOC_Os08g10450.1				GO:0005886 - plasma membrane, GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient, GO:0005337 - nucleoside transmembrane transporter activity, GO:0016021 - integral to membrane	TO:0001013 - lateral root number	
6132	ENT2	OsENT2	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 2	equilibrative nucleoside transporter	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 2		7		 Biochemical character	Os07g0557100	LOC_Os07g37100.2, LOC_Os07g37100.1				GO:0005337 - nucleoside transmembrane transporter activity, GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient, GO:0015858 - nucleoside transport, GO:0015862 - uridine transport, GO:0032238 - adenosine transport, GO:0010184 - cytokinin transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		PO:0009005 - root , PO:0025287 - seedling coleoptile , PO:0020110 - scutellum , PO:0000034 - vascular system , PO:0007057 - 0 seed germination stage , PO:0005029 - root primordium 
6133	ENT3	OsENT3	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3	equilibrative nucleoside transporter 3	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3		7		 Biochemical character	Os07g0557200	LOC_Os07g37110.1				GO:0016021 - integral to membrane, GO:0005337 - nucleoside transmembrane transporter activity, GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient, GO:0005886 - plasma membrane		PO:0009005 - root 
6134	ENT4	OsENT4	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4	equilibrative nucleoside transporter 4	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4		7		 Biochemical character	Os07g0557400	LOC_Os07g37130.3, LOC_Os07g37130.2, LOC_Os07g37130.1				GO:0015395 - nucleoside transmembrane transporter activity, down a concentration gradient, GO:0005337 - nucleoside transmembrane transporter activity, GO:0016021 - integral to membrane		PO:0009005 - root 
6135	EP3A	OsEP3A	CYCTEINE ENDOPEPTIDASE	cysteine proteinase	CYSTEINE ENDOPEPTIDASE				 Biochemical character						GO:0004197 - cysteine-type endopeptidase activity		
6136	EPSPS	OsEPSPS	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE	5-enolpyruvylshikinate 3-phospate synthase	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE				 Biochemical character						GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity		
6137	EREBP1	OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84	ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN 1	ethylene-responsive element-binding protein 1, ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN1, Ethylene-responsive transcription factor 1, Ethylene-responsive element-binding factor 1, ethylene response factor 70, APETALA2/ethylene-responsive element binding protein 84	ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN 1		2	Q6K7E6. AF193803.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os02g0782700	LOC_Os02g54160.1, LOC_Os02g54160.2				GO:0002237 - response to molecule of bacterial origin, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006970 - response to osmotic stress, GO:0009635 - response to herbicide, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0009609 - response to symbiotic bacterium	TO:0000058 - herbicide sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
6138	EXPB1B	OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1	BETA-EXPANSIN 1B	Expansin-B1, Beta-expansin-1, Major pollen allergen Ory s 1	BETA-EXPANSIN 1B		3	Q40638.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0106900	LOC_Os03g01650.1				GO:0005576 - extracellular region, GO:0007047 - cell wall organization, GO:0010044 - response to aluminum ion, GO:0019898 - extrinsic to membrane, GO:0019953 - sexual reproduction, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005618 - cell wall	TO:0000354 - aluminum sensitivity	
6139	EXPB2	OsEXPB2, OsaEXPb1.9, EXPb1.9	BETA-EXPANSIN 2	Expansin-B2, Beta-expansin-2	BETA-EXPANSIN 2		10	O24230. U95968.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Biochemical character	Os10g0555700	LOC_Os10g40710.1				GO:0019898 - extrinsic to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005618 - cell wall, GO:0019953 - sexual reproduction, GO:0007047 - cell wall organization, GO:0005576 - extracellular region	TO:0000485 - sterility related trait	
6140	EXPB3	OsEXPB3, osaEXPb1.10, EXPb1.10	BETA-EXPANSIN 3	Expansin-B3, Beta-expansin-3	BETA-EXPANSIN 3		10	Q336T5.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Vegetative organ - Culm	Os10g0555900	LOC_Os10g40720.1				GO:0019953 - sexual reproduction, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005576 - extracellular region, GO:0019898 - extrinsic to membrane, GO:0007047 - cell wall organization, GO:0005618 - cell wall	TO:0000207 - plant height	
6141	EXPB4	OsEXPB4, OsaEXPb1.7, EXPb1.7	BETA-EXPANSIN 4	Expansin-B4, Beta-expansin-4	BETA-EXPANSIN 4		10	Q94LR4.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Biochemical character	Os10g0556100	LOC_Os10g40730.1				GO:0007047 - cell wall organization, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0019953 - sexual reproduction, GO:0019898 - extrinsic to membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall	TO:0000085 - leaf rolling, TO:0000207 - plant height	
6142	EYA1	OsEya1, OSEya1, OSEYA1	HOMOLOG OF ANIMAL EYES ABSENT GENE	homolog of animal eyes absent gene	OSEYA1		6	The OSEya1 gene is located between the wx gene and the telomere on the short arm of chromosome 6. AB028887.	 Other	Os06g0110100 	LOC_Os06g02028.1				GO:0003700 - transcription factor activity, GO:0009653 - anatomical structure morphogenesis, GO:0007275 - multicellular organismal development, GO:0030946 - protein tyrosine phosphatase activity, metal-dependent		
6144	FCA	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma	OSFCA PROTEIN	OsFCA protein	OSFCA PROTEIN		9	homology with Arabidopsis FCA, flowering time control protein. AY274928, AY730687. AY311343, AY311344, AY331574. PO:0009051; spikelet ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0006340; adult leaf. GRO:0007157; panicle development.	 Reproductive organ - Heading date	Os09g0123200	LOC_Os09g03610.1, LOC_Os09g03610.2, LOC_Os09g03610.3, LOC_Os09g03610.4	GR:0080002			GO:0000166 - nucleotide binding, GO:0044428 - nuclear part, GO:0003723 - RNA binding, GO:0009909 - regulation of flower development, GO:0009553 - embryo sac development, GO:0009790 - embryonic development, GO:0031048 - chromatin silencing by small RNA	TO:0000137 - days to heading, TO:0000052 - primary branching of inflorescence	PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0006340 - adult vascular leaf , PO:0009005 - root 
6145	FEN1	OsFEN1, OsFEN-1a, FEN-1	FLAP ENDONUCLEASE 1	flap endonuclease-1, Flap endonuclease-1a	FLAP ENDONUCLEASE 1		5	Q9SXQ6. AU108651, AB021666.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0540100	LOC_Os05g46270.1				GO:0000287 - magnesium ion binding, GO:0010332 - response to gamma radiation, GO:0006281 - DNA repair, GO:0048256 - flap endonuclease activity, GO:0003677 - DNA binding, GO:0004519 - endonuclease activity, GO:0005634 - nucleus		
6146	FOR1	OsFOR1, Osfor1, OsPGIP5, PGIP5	FLORAL ORGAN REGULATOR 1	rice floral organ regulator-1, Floral organ regulator 1, Polygalacturonase-inhibiting protein 5	FLORAL ORGAN REGULATOR 1		7	Q8GT95. PO:0004706; flower primordium ; PO:0006318; floret (sensu Poaceae) ; PO:0005052; callus. GRO:0007158; spikelet development ; GRO:0007157; panicle development. AF466357. AAO17320. Polygalacturonase-inhibiting protein, PGIP protein	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance	Os07g0568700	LOC_Os07g38130.1	GR:0080005			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0032940 - secretion by cell, GO:0042742 - defense response to bacterium, GO:0030154 - cell differentiation, GO:0004857 - enzyme inhibitor activity, GO:0005515 - protein binding, GO:0048833 - specification of floral organ number	TO:0000223 - pistil anatomy and morphology trait, TO:0000203 - bacterial leaf streak disease resistance, TO:0000209 - palea number, TO:0000657 - spikelet anatomy and morphology trait, TO:0000225 - stamen number, TO:0000208 - lemma number	PO:0005052 - plant callus , PO:0009082 - spikelet floret , PO:0004706 - flower primordium 
6147	GAE1	OsGAE1	GA-ENHANCED GENE 1	gibberellin-regulated gene, GA-enhanced gene 1	GA-ENHANCED PROTEIN 1		1		 Vegetative organ - Shoot apical meristem(SAM),  Character as QTL - Plant growth activity,  Vegetative organ - Culm	Os01g0201600	LOC_Os01g10490.1				GO:0048608 - reproductive structure development, GO:0009739 - response to gibberellin stimulus, GO:0010476 - gibberellin-mediated signaling	TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000357 - growth and development trait	PO:0005052 - plant callus , PO:0020104 - leaf sheath , PO:0020148 - shoot apical meristem , PO:0025034 - leaf 
6149	GLU	OsGLU	PUTATIVE MEMBRANE-BOUND ENDO-1,4-BETA-D-GLUCANASE	putative membrane-bound endo-1, 4-beta-D-glucanase	PUTATIVE MEMBRANE-BOUND ENDO-1,4-BETA-D-GLUCANASE		3		 Biochemical character						GO:0008810 - cellulase activity		
6150	GNA1	OsGNA1	GLUCOSAMINE-6-P ACETYLTRANSFERASE 1	glucosamine-6-P acetyltransferase-1	GLUCOSAMINE-6-P ACETYLTRANSFERASE 1		9	Root elongation. LOC_Os09g31310. Q5U9F2.	 Vegetative organ - Culm,  Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os09g0488000	LOC_Os09g31310.1				GO:0009266 - response to temperature stimulus, GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity, GO:0048364 - root development, GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0006045 - N-acetylglucosamine biosynthetic process, GO:0005789 - endoplasmic reticulum membrane	TO:0000227 - root length, TO:0000432 - temperature response trait, TO:0000207 - plant height	PO:0001031 - 4 root elongation stage 
6151	OSH69	Osh69	LEAF SENESCENCE	alkaline alpha-galactosidase					 Vegetative organ - Leaf						GO:0047274 - galactinol-sucrose galactosyltransferase activity		
6154	SGD2	HOX3, Oshox3, OsHox3, OsHDZ1, HDZ1, OsHDZIP1, HDZIP1	SMALL GRAIN AND DWARF 2	rice homeobox gene 3, Homeobox-leucine zipper protein HOX3, Homeodomain transcription factor HOX3, HD-ZIP protein HOX3, Small Grain and Dwarf 2, homeodomain-leucine zipper transcription factor 1, OsHDZIP transcription factor 1	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX3	sgd2	1	Q9XH38(indica), Q0JKX1(japonica). PO:0030123: panicle inflorescence. TO:0000975: grain width. GO:0080186: developmental vegetative growth. GO:0061458: reproductive system development.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Other,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle	Os01g0643600	LOC_Os01g45570.1				GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0016049 - cell growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0030371 - translation repressor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress	TO:0000145 - internode length, TO:0000040 - panicle length, TO:0006001 - salt tolerance, TO:0000397 - grain size, TO:0000241 - leaf number, TO:0000592 - 1000-dehulled grain weight, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0000455 - seed set percent, TO:0002689 - leaf sheath length, TO:0002675 - gibberellic acid content, TO:0000734 - grain length, TO:0006020 - shoot apical meristem development	PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009089 - endosperm , PO:0025395 - floral organ , PO:0025034 - leaf 
6155	HOX4	Oshox4, OsHox4, OsHDZ31, OsHDZIP31, HDZ31, HDZIP31	HOMEOBOX GENE 4	rice homeobox gene 4, Homeobox-leucine zipper protein HOX4, Homeodomain transcription factor HOX4, HD-ZIP protein HOX4, HOMEOBOX4, homeodomain-leucine zipper transcription factor 31, OsHDZIP transcription factor 31	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX4		9	EF555524, AF145728. Q9XH37(indica), Q6K498(japonica).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Other,  Character as QTL - Yield and productivity	Os09g0470500	LOC_Os09g29460.1				GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0009740 - gibberellic acid mediated signaling, GO:0009685 - gibberellin metabolic process, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress	TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000346 - tiller number	
6156	HOX5	Oshox5, OsHox5, EIP9, OsHDZ25, OsHDZIP25, HDZ25, HDZIP25, OsHDZ26, OsHDZIP26, HDZ26, HDZIP26	HOMEOBOX GENE 5	rice homeobox gene 5, Homeobox-leucine zipper protein HOX5, Homeodomain transcription factor HOX5, HD-ZIP protein HOX5, EBR1-interacting protein 9, homeodomain-leucine zipper transcription factor 25, OsHDZIP transcription factor 25, homeodomain-leucine zipper transcription factor 26, OsHDZIP transcription factor 26	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX5		8	EF555525, AF145729. Q9XH36(indica), Q6ZA74(japonica). OsHDZ25: LOC_Os08g32080, OsHDZ26: LOC_Os08g32085 in Ahmad et al. 2022.	 Seed,  Other	Os08g0416000	LOC_Os08g32080.1, LOC_Os08g32085.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000620 - embryo development trait, TO:0002677 - brassinosteroid sensitivity, TO:0000653 - seed development trait, TO:0000172 - jasmonic acid sensitivity	
6157	HOX6	Oshox6, OsHox6, OsHDZ33, OsHDZIP33, HDZ33, HDZIP33	HOMEOBOX GENE 6	rice homeobox gene 6, Homeobox-leucine zipper protein HOX6, Homeodomain transcription factor HOX6, HD-ZIP protein HOX6, homeodomain-leucine zipper transcription factor 33, OsHDZIP transcription factor 33	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX6		9	EF555526, AF145730. Q9XH35(indica), Q651Z5(japonica).	 Other,  Tolerance and resistance - Stress tolerance	Os09g0528200	LOC_Os09g35910.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0030912 - response to deep water, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009753 - response to jasmonic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000524 - submergence tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009049 - inflorescence 
6158	HOX7	Oshox7, OsHox7, OsHDZ5, OsHDZIP5, HDZ5, HDZIP5	HOMEOBOX GENE 7	rice homeobox gene 7, Homeobox-leucine zipper protein HOX7, Homeodomain transcription factor HOX7, HD-ZIP protein HOX7, homeodomain-leucine zipper transcription factor 5, OsHDZIP transcription factor 5	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX7		2	EF555527, AF145731. A2X674(indica), Q0E0A6(japonica).	 Other	Os02g0565600	LOC_Os02g35770.1, LOC_Os02g35770.2				GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000172 - jasmonic acid sensitivity	PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0009005 - root , PO:0025034 - leaf 
6159	HSP	Oshsp	SMALL HEAT SHOCK PROTEIN	small heat shock protein	SMALL HEAT SHOCK PROTEIN				 Tolerance and resistance - Stress tolerance						GO:0003773 - heat shock protein activity, GO:0042026 - protein refolding, GO:0009408 - response to heat		
6160	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C	HEAT SHOCK PROTEIN 101	Heat shock protein 101, class I Clp ATPase B-CYT, Clp-B cytoplasmic, Heat shock protein 101, ClpB/Hsp100 cytoplasmic isoform	HEAT SHOCK PROTEIN 101		5	small heat shock protein. Q6F2Y7. AJ316025. AU093088.	 Tolerance and resistance - Stress tolerance	Os05g0519700	LOC_Os05g44340.1				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0019538 - protein metabolic process, GO:0005515 - protein binding, GO:0006950 - response to stress, GO:0017111 - nucleoside-triphosphatase activity	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
6161	HSP16.9A	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI	16.9 KDA CLASS I HEAT SHOCK PROTEIN 1	16.9 kDa class I heat shock protein 1, 16.9 kDa heat shock protein 1	16.9 KDA CLASS I HEAT SHOCK PROTEIN 1 		1	small heat shock protein. P27777. M80938. X60820.	 Tolerance and resistance - Stress tolerance	Os01g0136100	LOC_Os01g04370.1				GO:0010286 - heat acclimation, GO:0051259 - protein oligomerization, GO:0009414 - response to water deprivation, GO:0009644 - response to high light intensity, GO:0005737 - cytoplasm, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000188 - drought sensitivity, TO:0000653 - seed development trait	
6162	HSP16.9B	Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, Hsp17.0, OsSHSP2, OsSTA3	16.9 KDA CLASS I HEAT SHOCK PROTEIN 2	16.9 kDa class I heat shock protein 2, 16.9 kDa heat shock protein 2	16.9 KDA CLASS I HEAT SHOCK PROTEIN 2 		1	small heat shock protein. Q943E6. M80939. OsSHSP2 in Ham et al. 2013. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os01g0136200	LOC_Os01g04380.1				GO:0042542 - response to hydrogen peroxide, GO:0010286 - heat acclimation, GO:0005737 - cytoplasm, GO:0000302 - response to reactive oxygen species, GO:0009644 - response to high light intensity, GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0009066 - anther 
6163	HSP16.9C	Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C	16.9 KDA CLASS I HEAT SHOCK PROTEIN 3	16.9 kDa class I heat shock protein 3, 16.9 kDa heat shock protein 3	16.9 KDA CLASS I HEAT SHOCK PROTEIN 3 		1	small heat shock protein. Q943E7. U81385.	 Tolerance and resistance - Stress tolerance	Os01g0136000	LOC_Os01g04360.1				GO:0005737 - cytoplasm, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
6164	HSP16.9D	Oshsp16.9D	16.9 KDA CLASS I HEAT SHOCK PROTEIN 4	16.9 kDa small heat shock protein 4	16.9 KDA CLASS I HEAT SHOCK PROTEIN 4				 Tolerance and resistance - Stress tolerance						GO:0009408 - response to heat, GO:0003773 - heat shock protein activity, GO:0042026 - protein refolding	TO:0000259 - heat tolerance	
6165	HSP17.3	OsHsp17.3, OsHSP17.3, Oshsp17.3	17.3 KDA CLASS I HEAT SHOCK PROTEIN 	17.3 kDa class I heat shock protein, 17.3 kDa heat shock protein, 17.3-kD class I heat shock protein	17.3 KDA CLASS I HEAT SHOCK PROTEIN 		3	small heat shock protein. Class-I Low-Molecular-Mass Heat-Shock Protein. U83669. P31673. M80186. HSP20 in Sato et al. 2016.	 Tolerance and resistance - Stress tolerance	Os03g0266900	LOC_Os03g16020.1				GO:0045471 - response to ethanol, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0046686 - response to cadmium ion, GO:0046688 - response to copper ion, GO:0003773 - heat shock protein activity, GO:0042026 - protein refolding, GO:0046685 - response to arsenic, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
6166	HSP17.7	OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7	17.7 KDA CLASS I HEAT SHOCK PROTEIN	17.7 kDa class I heat shock protein, 17.7 kDa heat shock protein, 17.7-kD class I heat shock protein	17.7 KDA CLASS I HEAT SHOCK PROTEIN 		3	small heat shock protein. Class-I Low-Molecular-Mass Heat-Shock Protein. Q84J50. AAC78394. U83671.	 Tolerance and resistance - Stress tolerance	Os03g0267200	LOC_Os03g16040.1				GO:0005737 - cytoplasm, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0042542 - response to hydrogen peroxide, GO:0046685 - response to arsenic, GO:0045471 - response to ethanol, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
6167	HSP17.9A	Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9	17.9 KDA CLASS I HEAT SHOCK PROTEIN 1	17.9 kDa class I heat shock protein, 17.9 kDa heat shock protein 1, 17.9-kD class I heat shock protein	17.9 KDA CLASS I HEAT SHOCK PROTEIN 1		3	small heat shock protein. Q84Q77. AY034057. HSP20 in Sato et al. 2016.	 Tolerance and resistance - Stress tolerance	Os03g0266300	LOC_Os03g15960.1, LOC_Os03g15960.2				GO:0009408 - response to heat, GO:0005634 - nucleus	TO:0000259 - heat tolerance	
6168	HSP17.9B	Oshsp17.9B., OsHsp17.9B	17.9 KDA HEAT SHOCK PROTEIN 2	17.9 kDa heat shock protein 2	17.9 KDA HEAT SHOCK PROTEIN 2		1	small heat shock protein. Q943E9.	 Tolerance and resistance - Stress tolerance	Os01g0135900	LOC_Os01g04350.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0006950 - response to stress, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
6169	HSP18.0-CII	OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2	18.0 KDA CLASS II HEAT SHOCK PROTEIN	18.0 kDa class II heat shock protein, small heat shock protein 18.0	18.0 KDA CLASS II HEAT SHOCK PROTEIN 		1	small heat shock protein. Q5VRY1. DQ180746. OsHSP18.2 in Kaur et al. 2015. GO:2000031: regulation of salicylic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Longevity,  Tolerance and resistance - Stress tolerance	Os01g0184100	LOC_Os01g08860.1, LOC_Os01g08860.2				GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0005635 - nuclear envelope, GO:0046907 - intracellular transport, GO:0007568 - aging, GO:0010431 - seed maturation, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat	TO:0002661 - seed maturation, TO:0000430 - germination rate, TO:0000250 - vigor related trait, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000435 - seed longevity, TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0007632 - seed maturation stage 
6170	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1	INOSITOL 1-PHOSPHATE SYNTHASE-1	inositol 1-phosphate synthase-1, Inositol-3-phosphate synthase, Myo-inositol-1-phosphate synthase, MI-1-P synthase, 1D-myo-inositol 3-phosphate synthase 1, rice myo-inositol-1-phosphate synthase, Ins(1)P1 synthase 1, 1L-myo-inositol-1-phosphate synthase 1, myo-inositol-1-phosphate synthase 1, L-myo-inositol 1-phosphate synthase 1	INOSITOL 1-PHOSPHATE SYNTHASE-1		3	EC=5.5.1.4 O64437. PO:0009009; embryo ; PO:0009010; seed. AB012107. AF412340 (PINO1: Porteresia coarctata (=Oryza coarctata) INO1). FJ237299 (PcINO1-1: Oryza coarctata INO1-1).  OgINO1 (Oryza glaberrima INO1).  AB060300 (promoter region).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0192700	LOC_Os03g09250.1, LOC_Os03g09250.2, LOC_Os03g09250.3, LOC_Os03g09250.4	GR:0061378			GO:0005488 - binding, GO:0009744 - response to sucrose stimulus, GO:0006021 - inositol biosynthetic process, GO:0008654 - phospholipid biosynthetic process, GO:0006793 - phosphorus metabolic process, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0004512 - inositol-3-phosphate synthase activity	TO:0000064 - embryo related trait, TO:0000488 - seed composition based quality trait, TO:0002666 - seed phosphorus content, TO:0000615 - abscisic acid sensitivity	PO:0009009 - plant embryo , PO:0009010 - seed 
6171	IPT1	OsIPT1	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 1	adenosine phosphate isopentenyltransferase 1, isopentenyltransferase 1	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 1		3	AB239797. adenylate isopentenyltransferase.	 Character as QTL - Yield and productivity,  Biochemical character	Os03g0358900	LOC_Os03g24440.1				GO:0005524 - ATP binding, GO:0008033 - tRNA processing, GO:0006400 - tRNA modification, GO:0009691 - cytokinin biosynthetic process, GO:0052381 - tRNA dimethylallyltransferase activity, GO:0005737 - cytoplasm, GO:0016740 - transferase activity, GO:0005739 - mitochondrion, GO:0009824 - adenylate dimethylallyltransferase activity	TO:0000011 - nitrogen sensitivity, TO:0000456 - spikelet number	
6172	IPT2	OsIPT2	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 2	adenosine phosphate isopentenyltransferase 2, isopentenyltransferase 2	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 2		3	AB239798. adenylate isopentenyltransferase.	 Biochemical character,  Character as QTL - Yield and productivity	Os03g0356900 	LOC_Os03g24240.1				GO:0005737 - cytoplasm, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0016740 - transferase activity, GO:0008033 - tRNA processing, GO:0005524 - ATP binding, GO:0009691 - cytokinin biosynthetic process	TO:0000011 - nitrogen sensitivity, TO:0000456 - spikelet number	
6173	IPT3	OsIPT3	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 3	adenosine phosphate isopentenyltransferase 3, isopentenyltransferase 3	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 3		5	AB239799. adenylate isopentenyltransferase. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os05g0311801					GO:0009609 - response to symbiotic bacterium, GO:0042594 - response to starvation, GO:0005524 - ATP binding, GO:0008033 - tRNA processing, GO:0016740 - transferase activity, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0009691 - cytokinin biosynthetic process, GO:0005737 - cytoplasm, GO:0005739 - mitochondrion, GO:0006400 - tRNA modification, GO:0052381 - tRNA dimethylallyltransferase activity	TO:0000011 - nitrogen sensitivity, TO:0000456 - spikelet number	
6174	IPT4	OsIPT4	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 4	adenosine phosphate isopentenyltransferase 4, isopentenyltransferase 4, ISOPENTENYL-TRANSFERASE 4	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 4		3	AB239800. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity.	 Vegetative organ - Root,  Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os03g0810100 	LOC_Os03g59570.1				GO:0008033 - tRNA processing, GO:0009691 - cytokinin biosynthetic process, GO:0005524 - ATP binding, GO:0010167 - response to nitrate, GO:0009536 - plastid, GO:0060359 - response to ammonium ion, GO:0016740 - transferase activity, GO:0009733 - response to auxin stimulus, GO:0042594 - response to starvation, GO:0009824 - adenylate dimethylallyltransferase activity	TO:0000456 - spikelet number, TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity	PO:0009005 - root 
6175	IPT5	OsIPT5	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 5	adenosine phosphate isopentenyltransferase 5, isopentenyltransferase 5	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 5 		7	AB239801. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0211700	LOC_Os07g11050.1				GO:0009733 - response to auxin stimulus, GO:0016740 - transferase activity, GO:0009536 - plastid, GO:0010167 - response to nitrate, GO:0005524 - ATP binding, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0060359 - response to ammonium ion, GO:0008033 - tRNA processing, GO:0042594 - response to starvation, GO:0009691 - cytokinin biosynthetic process	TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity	
6176	IPT6	OsIPT6, OsIPT6.p	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 6	adenosine phosphate isopentenyltransferase 6, isopentenyltransferase 6, adenosine phosphate isopentenyltransferase 6 pseudogene	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 6			AB239802, AB239803. adenylate isopentenyltransferase.	 Biochemical character						GO:0016740 - transferase activity, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0005524 - ATP binding, GO:0008033 - tRNA processing, GO:0009691 - cytokinin biosynthetic process		
6177	IPT7	OsIPT7	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 7	adenosine phosphate isopentenyltransferase 7, isopentenyltransferase 7	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 7		5	AB239804. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os05g0551700 	LOC_Os05g47840.1				GO:0009733 - response to auxin stimulus, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0009691 - cytokinin biosynthetic process, GO:0010167 - response to nitrate, GO:0060359 - response to ammonium ion, GO:0042594 - response to starvation, GO:0016740 - transferase activity, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0008033 - tRNA processing	TO:0000456 - spikelet number, TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity	
6178	IPT8	OsIPT8	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 8	adenosine phosphate isopentenyltransferase 8, isopentenyltransferase 8	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 8		1	AB239805. AB853903. adenylate isopentenyltransferase. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0688300	LOC_Os01g49390.1				GO:0009824 - adenylate dimethylallyltransferase activity, GO:0009691 - cytokinin biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0008033 - tRNA processing, GO:0042594 - response to starvation, GO:0016740 - transferase activity, GO:0009536 - plastid, GO:0005524 - ATP binding	TO:0000163 - auxin sensitivity, TO:0000456 - spikelet number, TO:0000011 - nitrogen sensitivity	PO:0009006 - shoot system 
6179	ISA2	OsISA2, ISA II, OsISA II	ISOAMYLASE 2	isoamylase-2, isoamylase 2	ISOAMYLASE 2		5	AC132483. Q6AU80. OsISA2 was highly expressed in both endosperm and leaves.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os05g0393700	LOC_Os05g32710.1				GO:0043169 - cation binding, GO:0019252 - starch biosynthetic process, GO:0010021 - amylopectin biosynthetic process, GO:0043033 - isoamylase complex, GO:0009507 - chloroplast, GO:0005983 - starch catabolic process, GO:0019156 - isoamylase activity		PO:0009089 - endosperm , PO:0025034 - leaf 
6180	ISA3	OsISA3	ISOAMYLASE 3	isoamylase-3, isoamylase3	ISOAMYLASE 3	isa3	9	AP005574. OsISA3 transcript was extremely low in endosperm, whereas it was expressed in leaves.	 Biochemical character	Os09g0469400	LOC_Os09g29404.3, LOC_Os09g29404.2, LOC_Os09g29404.1				GO:0043169 - cation binding, GO:0019156 - isoamylase activity		
6181	SAP1	Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1	STRESS ASSOCIATED PROTEIN GENE 1	rice (indica) stress associated protein gene1, Zinc finger A20 and AN1 domain-containing stress-associated protein 1, Multiple stress-responsive zinc finger protein ISAP1, O. sativa subspecies indica stress-associated protein 1, stress-associated protein 1	STRESS ASSOCIATED PROTEIN 1		9	A2Z2J6(indica), A3C039(japonica). AF140722, AY137590. KC610891-KC610901 (O. sativa and wild rice species, partial ads). an A20/AN1 zinc-finger containing protein. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0486500	LOC_Os09g31200.1				GO:0030912 - response to deep water, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0080134 - regulation of response to stress, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0003677 - DNA binding, GO:0009607 - response to biotic stimulus, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0006952 - defense response	TO:0000112 - disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000179 - biotic stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	PO:0001170 - seed development stage 
6182	OSK1	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a, OsSnRK1.2, SnRK1.2, OsSnRK1alphaA, SnRK1alphaA	PROTEIN KINASE 1	protein kinase 1, SnRK1A protein kinase, sucrose non-fermenting-1 related protein kinase 1a, SNF1-Related Protein Kinase 1A	PROTEIN KINASE 1	snrk1a, snrk1a-1, snrk1a-2, snrk1alphaa, ossnrk1a, ossnrk1a-1, ossnrk1a-2, ossnrk1a-3	5	D82039. AB101655. GO:0080151: positive regulation of salicylic acid mediated signaling pathway. GO:1900426: positive regulation of defense response to bacterium. GO:0097009: energy homeostasis. GO:0090549: response to carbon starvation. PO:0030123: panicle inflorescence. GO:0090693: plant organ senescence. TO:0001041: root yield. GO:2000280: regulation of root development. GO:0140426: PAMP-triggered immunity signalling pathway.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Seed,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Biochemical character,  Seed - Physiological traits - Dormancy,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os05g0530500 	LOC_Os05g45420.1, LOC_Os05g45420.3, LOC_Os05g45420.2				GO:0009409 - response to cold, GO:0017148 - negative regulation of translation, GO:0022414 - reproductive process, GO:2000028 - regulation of photoperiodism, flowering, GO:0051511 - negative regulation of unidimensional cell growth, GO:0042742 - defense response to bacterium, GO:0006468 - protein amino acid phosphorylation, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0051093 - negative regulation of developmental process, GO:0005524 - ATP binding, GO:0009845 - seed germination, GO:0010182 - sugar mediated signaling, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0052544 - callose deposition in cell wall during defense response, GO:0002679 - respiratory burst during defense response, GO:0009646 - response to absence of light, GO:0002253 - activation of immune response, GO:0009607 - response to biotic stimulus, GO:0007623 - circadian rhythm, GO:0033500 - carbohydrate homeostasis, GO:0004674 - protein serine/threonine kinase activity, GO:0008643 - carbohydrate transport, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009743 - response to carbohydrate stimulus, GO:0042594 - response to starvation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009628 - response to abiotic stimulus, GO:0048316 - seed development, GO:0010431 - seed maturation, GO:0045926 - negative regulation of growth, GO:0043617 - cellular response to sucrose starvation, GO:0031667 - response to nutrient levels, GO:0007165 - signal transduction, GO:0050832 - defense response to fungus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0080094 - response to trehalose-6-phosphate stimulus	TO:0002668 - jasmonic acid content, TO:0002664 - leaf yellowing tolerance, TO:0000280 - seedling vigor, TO:0000175 - bacterial blight disease resistance, TO:0000227 - root length, TO:0002661 - seed maturation, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0000615 - abscisic acid sensitivity, TO:0000001 - carbon sensitivity, TO:0000397 - grain size, TO:0000255 - sheath blight disease resistance, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000366 - reproductive growth time, TO:0000328 - sucrose content, TO:0000253 - seed dormancy, TO:0000291 - carbohydrate content, TO:0000357 - growth and development trait, TO:0000455 - seed set percent, TO:0000346 - tiller number, TO:0000168 - abiotic stress trait, TO:0006003 - oligosaccharide content, TO:0000447 - filled grain number, TO:0001015 - photosynthetic rate, TO:0000371 - yield trait, TO:0000420 - fertility related trait, TO:0000460 - light intensity sensitivity, TO:0000137 - days to heading, TO:0000327 - biomass yield, TO:0000456 - spikelet number, TO:0000179 - biotic stress trait, TO:0000356 - brown spot disease resistance, TO:0000480 - nutrient sensitivity, TO:0002616 - flowering time	PO:0005052 - plant callus , PO:0025082 - reproductive shoot system , PO:0001170 - seed development stage , PO:0007632 - seed maturation stage , PO:0025034 - leaf , PO:0009049 - inflorescence 
6183	OSK2	osk2	PROTEIN KINASE 2	protein kinase 2	PROTEIN KINASE 2			D82037.	 Biochemical character						GO:0009960 - endosperm development, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity		
6184	OSK3	osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35, OsSnRK1.1, SnRK1.1, OsSnRK1alphaB, SnRK1alphaB	PROTEIN KINASE 3	protein kinase 3, autophagy 1b, AUTOPHAGY ASSOCIATED GENE 1B, protein kinase 5, sucrose non-fermenting-1 related protein kinase 1b, SUCROSE NON-FERMENTING 1-RELATED PROTEIN KINASE 1.1	PROTEIN KINASE 3	snrk1alphab, ossnrk1.1-1, ossnrk1.1-2, ossnrk1.1-3	3	D82038, D82036. AB101657. GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root,  Vegetative organ - Culm,  Character as QTL - Germination	Os03g0289100	LOC_Os03g17980.1, LOC_Os03g17980.2				GO:0009737 - response to abscisic acid stimulus, GO:0046777 - protein amino acid autophosphorylation, GO:0009409 - response to cold, GO:0048364 - root development, GO:0009738 - abscisic acid mediated signaling, GO:0009960 - endosperm development, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0010029 - regulation of seed germination, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction	TO:0000483 - germinability at low temperature, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000227 - root length, TO:0000430 - germination rate, TO:0000615 - abscisic acid sensitivity	PO:0005052 - plant callus , PO:0007131 - seedling development stage 
6185	OSK4	osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b, OsSnRK1.4, SnRK1.4, OsSnRK1alphaC, SnRK1alphaC	PROTEIN KINASE 4	protein kinase 4, autophagy 1c, AUTOPHAGY ASSOCIATED GENE 1C, SnRK1B protein kinase, sucrose non-fermenting-1 related protein kinase 1b	PROTEIN KINASE 4	snrk1alphac	8	D82035. BAA36299. AB101656. TO:0020101: starch mobilization. GO:2000280: regulation of root development.	 Seed - Morphological traits - Endosperm,  Vegetative organ - Root,  Vegetative organ - Culm,  Biochemical character,  Reproductive organ - Heading date	Os08g0484600	LOC_Os08g37800.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0048364 - root development, GO:0009960 - endosperm development	TO:0000653 - seed development trait, TO:0000227 - root length, TO:0000207 - plant height, TO:0000137 - days to heading	PO:0007131 - seedling development stage , PO:0005052 - plant callus 
6187	OSKAPP	OsKAPP, OsPP94, DLN179, OsDLN179	KINASE-ASSOCIATED TYPE 2C PROTEIN PHOSPHATASE	kinase-associated type 2C protein phosphatase, kinase-associated PP, kinase associated protein phosphatase, Protein phosphatase 94, DLN repressor 179, DLN motif protein 179	KINASE-ASSOCIATED TYPE 2C PROTEIN PHOSPHATASE		7	AF075603.	 Biochemical character	Os07g0211400	LOC_Os07g11010.2, LOC_Os07g11010.1				GO:0007165 - signal transduction, GO:0005886 - plasma membrane, GO:0006470 - protein amino acid dephosphorylation, GO:0019901 - protein kinase binding, GO:0016301 - kinase activity, GO:0009934 - regulation of meristem structural organization, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding		
6190	OSKN2	OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2	KNOX PROTEIN 2	KNOX protein 2, Oryza sativa homeobox71, Homeobox protein knotted-1-like 10, Homeobox protein OSH71, Homeobox protein HOS9, Homeobox protein knotted-1-like 2, Rice KNOX gene-71	KNOX PROTEIN 2		5	Class 1 KNOX gene. Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. AF323785. CI740419. A2Y007(indica). Q7GDL5(japonica). PO:0009025; leaf.	 Character as QTL - Germination,  Vegetative organ - Leaf,  Vegetative organ - Shoot apical meristem(SAM),  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - Heading date	Os05g0129700	LOC_Os05g03884.1	GR:0061314			GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009629 - response to gravity, GO:0030912 - response to deep water	TO:0002616 - flowering time, TO:0000207 - plant height, TO:0002693 - gravity response trait, TO:0000524 - submergence tolerance, TO:0000492 - leaf shape	PO:0007057 - 0 seed germination stage , PO:0009025 - vascular leaf , PO:0007045 - coleoptile emergence stage 
6209	MADS24	OsMADS24, MADS8, OsMADS8, OsMADS8/24	MADS BOX GENE24	MADS box gene24, MADS-box protein 24, MADS-box transcription factor 8	MADS-BOX PROTEIN 24		9	Q9SAR1. a SEP3-like gene. MADS8 in Song et al. 2018, Yang et al. 2019, Duan et al. 2019, Li et al. 2021. an ortholog of Arabidopsis SEP3.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date,  Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - panicle	Os09g0507200	LOC_Os09g32948.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0010229 - inflorescence development, GO:0010582 - floral meristem determinacy, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005515 - protein binding, GO:0005634 - nucleus, GO:0009908 - flower development, GO:0030154 - cell differentiation, GO:0006350 - transcription	TO:0000621 - inflorescence development trait, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000622 - flower development trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0006023 - lodicule development trait, TO:0000245 - pollen free, TO:0000215 - stamen anatomy and morphology trait, TO:0002616 - flowering time, TO:0006012 - carpel anatomy and morphology trait, TO:0006009 - lodicule anatomy and morphology trait	PO:0001047 - lemma development stage , PO:0001048 - palea development stage , PO:0001083 - inflorescence development stage , PO:0001049 - lodicule development stage , PO:0007615 - flower development stage , PO:0025585 - floral organ formation stage 
6220	MAPK5A	OsMAPK5a	MITOGEN-ACTIVATED PROTEIN KINASE 5A	Mitogen-activated protein kinase 6	MITOGEN-ACTIVATED PROTEIN KINASE 5A				 Biochemical character						GO:0006468 - protein amino acid phosphorylation, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding		
6221	DSG1	OsMAPK6, MAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6, OsDSG1	DWARF AND SMALL GRAIN 1	Mitogen-activated protein kinase 1, MAP kinase 1, MAP kinase 6, dwarf and small grain1	MITOGEN-ACTIVATED PROTEIN KINASE 6	mpk6, osmpk6, osmpk6-1, osmpk6-2, dsg1	6	EC=2.7.11.24 AB183398. AJ535841. Q84UI5. Gene Expression Omnibus database: GSE18787. A major ABA-activated MAPK.  OsMPK1 in Yoo et al. 2014, Nanda et al. 2018, Ni et al. 2019, Viana et al. 2021. OsMPK6 in Jalmi and Sinha 2016, Hu et al. 2018, Zhang et al. 2019, Hong et al. 2022, Nguyen et al. 2022, Sinha et al. 2015, Yang et al. 2021, Wang et al. 2023, Guo et al. 2023, Wang et al. 2023, Yang  et al. 2023. GO:0080148: negative regulation of response to water deprivation. TO:0000847: panicle inflorescence morphology trait. TO:0000919: grain weight. GO:0097707: ferroptosis. TO:0020089: iron content trait. GO:1901000: regulation of response to salt stress.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Panicle, Mode of branching,  Tolerance and resistance - Insect resistance,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os06g0154500	LOC_Os06g06090.2, LOC_Os06g06090.1				GO:0010120 - camalexin biosynthetic process, GO:0080027 - response to herbivore, GO:0002213 - defense response to insect, GO:0009690 - cytokinin metabolic process, GO:0009409 - response to cold, GO:0010268 - brassinosteroid homeostasis, GO:0042127 - regulation of cell proliferation, GO:0009826 - unidimensional cell growth, GO:0002237 - response to molecule of bacterial origin, GO:0010229 - inflorescence development, GO:0009742 - brassinosteroid mediated signaling, GO:2000038 - regulation of stomatal complex development, GO:0000165 - MAPKKK cascade, GO:0006468 - protein amino acid phosphorylation, GO:0002221 - pattern recognition receptor signaling pathway, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0006979 - response to oxidative stress, GO:0045595 - regulation of cell differentiation, GO:0080136 - priming of cellular response to stress, GO:0009738 - abscisic acid mediated signaling, GO:0009611 - response to wounding, GO:0004707 - MAP kinase activity, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0009723 - response to ethylene stimulus, GO:2000037 - regulation of stomatal complex patterning, GO:0043068 - positive regulation of programmed cell death, GO:0002238 - response to molecule of fungal origin, GO:0042542 - response to hydrogen peroxide, GO:0048481 - ovule development, GO:0009737 - response to abscisic acid stimulus, GO:0009574 - preprophase band, GO:0048364 - root development, GO:0009741 - response to brassinosteroid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0005524 - ATP binding, GO:0009524 - phragmoplast, GO:0050832 - defense response to fungus, GO:0009733 - response to auxin stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0010200 - response to chitin, GO:0051301 - cell division, GO:0009814 - defense response, incompatible interaction, GO:0009753 - response to jasmonic acid stimulus, GO:0005802 - trans-Golgi network, GO:0009790 - embryonic development	TO:0002657 - oxidative stress, TO:0002667 - abscisic acid content, TO:0000457 - total biomass yield, TO:0000172 - jasmonic acid sensitivity, TO:0000447 - filled grain number, TO:0000391 - seed size, TO:0002660 - cytokinin content, TO:0000276 - drought tolerance, TO:0000273 - armyworm resistance, TO:0002759 - grain number, TO:0000456 - spikelet number, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0002669 - diterpenoid phytoalexin content, TO:0002668 - jasmonic acid content, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0000303 - cold tolerance, TO:0006032 - panicle size, TO:0000454 - stem borer resistance, TO:0006001 - salt tolerance, TO:0000439 - fungal disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000203 - bacterial leaf streak disease resistance, TO:0000656 - root development trait, TO:0002676 - brassinosteroid content, TO:0000621 - inflorescence development trait	PO:0007520 - root development stage , PO:0009051 - spikelet , PO:0001083 - inflorescence development stage 
6224	MSRMK2	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3	MULTIPLE STRESS RESPONSIVE MAP KINASE 2	multiple stress responsive MAP kinase 2, Mitogen-activated protein kinase 5, MAP kinase 5, Benzothiadiazole-induced MAP kinase 1, BTH-induced MAPK 1, MAP kinase 2, Multiple stress-responsive MAP kinase 2, MAP kinase 3	MULTIPLE STRESS RESPONSIVE MAP KINASE 2	mpk3ko, mpk3-1, mpk3-3	3	AJ486975, AF479883, AF216315, AF479884, AJ250311. AF332873. BF889466. EC=2.7.11.24 A2XFC8(indica), Q10N20(japonica). DQ826422 (indica). a putative meiosis-related gene. OsMPK3 in Jalmi and Sinha 2016, Hu et al. 2018, Ye et al. 2021, Hong et al. 2022, Singh et al. 2015, Yang et al. 2021, Wang et al. 2023, Laflamme 2023, Han et al. 2023. MPK5 in Lin et al. 2017, Zhang et al. 2018, Nanda et al. 2018, Guo et al. 2020, Jiang et al. 2021, He et al. 2021, Islam et al. 2023. up-regulated after fertilization (Abiko et al. 2013). OsMAPK3 in Zhang et al. 2017, Xia et al. 2021, Li et al. 2022, Xia et al. 2023, Wang et al. 2023. GO:1900150: regulation of defense response to fungus. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Insect resistance,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance	Os03g0285800	LOC_Os03g17700.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006970 - response to osmotic stress, GO:0001666 - response to hypoxia, GO:0042742 - defense response to bacterium, GO:0006468 - protein amino acid phosphorylation, GO:0009411 - response to UV, GO:0009611 - response to wounding, GO:0006979 - response to oxidative stress, GO:2000037 - regulation of stomatal complex patterning, GO:0031349 - positive regulation of defense response, GO:0009413 - response to flooding, GO:0007126 - meiosis, GO:0009723 - response to ethylene stimulus, GO:0002213 - defense response to insect, GO:0009734 - auxin mediated signaling pathway, GO:2000038 - regulation of stomatal complex development, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0048481 - ovule development, GO:0010120 - camalexin biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0016114 - terpenoid biosynthetic process, GO:0006952 - defense response, GO:0080027 - response to herbivore, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0000169 - activation of MAPK activity involved in osmosensory signaling pathway, GO:0005737 - cytoplasm, GO:0048364 - root development, GO:0042542 - response to hydrogen peroxide, GO:0009617 - response to bacterium, GO:0000165 - MAPKKK cascade, GO:0004707 - MAP kinase activity, GO:0009735 - response to cytokinin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009790 - embryonic development, GO:0009733 - response to auxin stimulus, GO:0080136 - priming of cellular response to stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009814 - defense response, incompatible interaction, GO:0010200 - response to chitin	TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0002668 - jasmonic acid content, TO:0000273 - armyworm resistance, TO:0000454 - stem borer resistance, TO:0000303 - cold tolerance, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0006003 - oligosaccharide content, TO:0000276 - drought tolerance, TO:0000112 - disease resistance, TO:0000163 - auxin sensitivity, TO:0000315 - bacterial disease resistance, TO:0002669 - diterpenoid phytoalexin content, TO:0000015 - oxygen sensitivity, TO:0000439 - fungal disease resistance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000286 - submergence sensitivity, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0002660 - cytokinin content	PO:0007520 - root development stage 
6226	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8	METALLOTHIONEIN2B	METALLOTHIONEIN2b, Metallothionein-like protein 2C, Class I metallothionein-like protein 2C, type 2 metallothionein b1, type 2 metallothionein b2, metallothionein 1	METALLOTHIONEIN2B		5	AF048750. EF584509. A2XZL0(indica), A3AZ88(japonica). U77294. U57638. met1 in Miyashita et al. 2005. AB175784-AB175796 (O. rufipogon). EF533993 (promoter sequence). D23569. Similar to B22EL8 protein. GO:0072593: reactive oxygen species metabolic process. OsMT2b in Wong et al. 2004, Kumar et al. 2012. OsMT-I-2c in Zhou et al. 2006. TO:0001069: cooking quality trait.	 Biochemical character,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance	Os05g0111300	LOC_Os05g02070.3, LOC_Os05g02070.2				GO:0060548 - negative regulation of cell death, GO:0005829 - cytosol, GO:0042594 - response to starvation, GO:0046872 - metal ion binding		PO:0009009 - plant embryo , PO:0009049 - inflorescence 
6227	MU	OsMu element	MU-LIKE TRANSPOSABLE ELEMENTS	Mu-like transpoaable elements					 Other								
6228	NAC1	OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60, OsORE1	NAC DOMAIN-CONTAINING PROTEIN 1	NAC domain-containing protein 027, NAC domain-containing protein 27, Oryza miR164-targeted NAC1, miR164-targeted NAC1, DLN repressor 60, DLN motif protein 60	NAC DOMAIN-CONTAINING PROTEIN 1		2	miR164c target gene. OsORE1 in Sakuraba et al. 2020.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Other	Os02g0579000 	LOC_Os02g36880.4, LOC_Os02g36880.3, LOC_Os02g36880.2, LOC_Os02g36880.1				GO:0009413 - response to flooding, GO:0009629 - response to gravity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045449 - regulation of transcription, GO:0009845 - seed germination, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0002693 - gravity response trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
6229	TIL1	NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113	TILLERING 1	NAC domain-containing protein 004, NAC domain-containing protein 4, NAC domain-containing protein 34, NAC domain-containing protein 58, miR164-targeted NAC2, Oryza miR164-targeted NAC2, Oryza sativa tillering1, ORESARA 1.2, DLN repressor 113, DLN motif protein 113	NAC DOMAIN-CONTAINING PROTEIN 2		4	DQ520641. miR164c target gene. OsNAC2 in Kikuchi et al. 2000, Jiang et al. 2019. Ostil1 and OsNAC2 in Mao et al. 2007. OsNAC092/ ORE1 in Rahman & Ullah 2023. a homolog of Arabidopsis thaliana ORESARA 1. GO:1902512: positive regulation of apoptotic DNA fragmentation. GO:2000280: regulation of root development. TO:0000949: seedling growth and development trait. GO:1900140: regulation of seedling development.	 Seed - Physiological traits - Dormancy,  Vegetative organ - Root,  Character as QTL - Germination,  Other,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0460600	LOC_Os04g38720.1				GO:0010187 - negative regulation of seed germination, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009740 - gibberellic acid mediated signaling, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0010365 - positive regulation of ethylene biosynthetic process, GO:0010150 - leaf senescence, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0045449 - regulation of transcription, GO:0048364 - root development, GO:0080036 - regulation of cytokinin mediated signaling, GO:0006350 - transcription, GO:0009651 - response to salt stress, GO:0010942 - positive regulation of cell death, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0010029 - regulation of seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000227 - root length, TO:0000430 - germination rate, TO:0000346 - tiller number, TO:0002639 - shoot branching, TO:0000095 - osmotic response sensitivity, TO:0002768 - spikelet length, TO:0002667 - abscisic acid content, TO:0000396 - grain yield, TO:0000615 - abscisic acid sensitivity, TO:0002616 - flowering time, TO:0000145 - internode length, TO:0000163 - auxin sensitivity, TO:0000450 - grain yield per panicle, TO:0000173 - ethylene sensitivity, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0000249 - leaf senescence, TO:0002660 - cytokinin content, TO:0002685 - crown root number, TO:0000567 - tiller angle, TO:0000017 - anatomy and morphology related trait, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height	PO:0000043 - crown root , PO:0000025 - root tip , PO:0001054 - 4 leaf senescence stage , PO:0005029 - root primordium , PO:0020121 - lateral root , PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
6234	NAC7	OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93, DLN167, OsDLN167	NAC DOMAIN-CONTAINING PROTEIN 7	OsNAC7 protein, NAC domain-containing protein 76, NAC domain-containing protein 093, NAC domain-containing protein 93, DLN repressor 167, DLN motif protein 167	NAC DOMAIN-CONTAINING PROTEIN 7		6	AB028186. Q5Z6B6.	 Other	Os06g0530400	LOC_Os06g33940.2, LOC_Os06g33940.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding		
6235	NAC8	OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3	NAC DOMAIN-CONTAINING PROTEIN 8	OsNAC8 protein, NAC domain-containing protein 8, NAC domain-containing protein 074, NAC domain-containing protein 74, NAC membrane-bound transcription factor 3, NAC MTF3	NAC DOMAIN-CONTAINING PROTEIN 8	ntl3-1, ntl3-2	1	AB028187. Q7GCL7.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0261200	LOC_Os01g15640.1				GO:0048366 - leaf development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0006350 - transcription, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0045449 - regulation of transcription, GO:0009408 - response to heat, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0034976 - response to endoplasmic reticulum stress, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000655 - leaf development trait, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0001050 - leaf development stage 
6236	NAM	OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2, DLN165, OsDLN165, OsCUC1, CUC1, OsNAM/ OMTN5, OsNAM1, NAM1	NO APICAL MERISTEM	no apical meristem, Petunia NO APICAL MERISTEM ortholog, miR164-targeted NAC5, Oryza miR164-targeted NAC5, NAC domain-containing protein 092, NAC domain-containing protein 92, DLN repressor 165, DLN motif protein 165, CUP-SHAPED COTYLEDON 1		oscuc1, osnam, osnam-1, osnam-2, osnam-3, osnam-4, rOsNAM-9, rOsNAM-14, rOsNAM-18	6	ortholog of A. thaliana CUC2. miR164c target gene. OsCUC1 in Wang et al. 2020. the closest homolog of both CUC1 and CUC2. TO:0006064: rolled leaf. TO:0000748: leaf morphology trait. GO:1902182: shoot apical meristem development. PO:0030123: panicle inflorescence. TO:0020109: vascular bundle development trait. TO:0000835: leaf sheath morphology trait. TO:0000847: panicle inflorescence morphology trait. TO:0000978: glume shape. TO:0000862: floral organ morphology trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Shoot apical meristem(SAM),  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os06g0344900	LOC_Os06g23650.1				GO:0048507 - meristem development, GO:0009790 - embryonic development, GO:0010492 - maintenance of shoot apical meristem identity, GO:0048508 - embryonic meristem development, GO:0010199 - organ boundary specification between lateral organs and the meristem, GO:0048437 - floral organ development, GO:0010450 - inflorescence meristem growth, GO:0045449 - regulation of transcription, GO:0010229 - inflorescence development, GO:0009791 - post-embryonic development, GO:0048366 - leaf development, GO:0048497 - maintenance of floral organ identity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0010093 - specification of floral organ identity	TO:0000276 - drought tolerance, TO:0000557 - secondary branch number, TO:0000437 - male sterility, TO:0000547 - primary branch number, TO:0000050 - inflorescence branching, TO:0006016 - meristem tissue development trait, TO:0000455 - seed set percent, TO:0006038 - floral organ number, TO:0000621 - inflorescence development trait, TO:0006020 - shoot apical meristem development, TO:0000135 - leaf length, TO:0006032 - panicle size, TO:0000215 - stamen anatomy and morphology trait, TO:0000225 - stamen number, TO:0000655 - leaf development trait, TO:0006010 - lodicule number, TO:0000207 - plant height, TO:0020034 - glume width, TO:0000040 - panicle length, TO:0000274 - floret anatomy and morphology trait, TO:0000670 - floret number, TO:0000657 - spikelet anatomy and morphology trait, TO:0000145 - internode length, TO:0006022 - floral organ development trait, TO:0002689 - leaf sheath length, TO:0006019 - floral organ identity	PO:0009082 - spikelet floret , PO:0009010 - seed , PO:0020033 - coleoptile , PO:0025142 - leaf tip , PO:0009030 - carpel , PO:0025082 - reproductive shoot system , PO:0009029 - stamen , PO:0020103 - flag leaf , PO:0020148 - shoot apical meristem , PO:0009005 - root , PO:0005020 - vascular bundle , PO:0025585 - floral organ formation stage , PO:0009037 - lemma , PO:0009038 - palea , PO:0025034 - leaf , PO:0009055 - bract , PO:0001050 - leaf development stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
6237	NAR2.1	OsNAR2.1, OsNRT3.1A	ACTIVATOR FOR NRT2	activator for NRT2, high-affinity nitrate transporter-activating element 2.1	ACTIVATOR FOR NRT2	osnar2.1	2	Q6ZI50.OsNRT3.1A in Plett et al. 2010. GO:1902584: positive regulation of response to water deprivation. GO:1901698: response to nitrogen compound.  TO:0020093: nitrogen content. TO:0020098: nitrate sensitivity. TO:0020100: nitrate uptake. TO:0000870: leaf yield trait. GO:1902025: nitrate import. GO:0071705: nitrogen compound transport.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Biochemical character,  Vegetative organ - Root	Os02g0595900	LOC_Os02g38230.1				GO:0009610 - response to symbiotic fungus, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0042128 - nitrate assimilation, GO:0010167 - response to nitrate, GO:0015112 - nitrate transmembrane transporter activity, GO:0009611 - response to wounding, GO:0030104 - water homeostasis, GO:0060359 - response to ammonium ion, GO:0019740 - nitrogen utilization, GO:0010618 - aerenchyma formation	TO:0001015 - photosynthetic rate, TO:0000543 - leaf nitrogen content, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0000357 - growth and development trait, TO:0000136 - relative water content, TO:0001017 - water use efficiency, TO:0000495 - chlorophyll content, TO:0000276 - drought tolerance, TO:0000143 - relative biomass, TO:0000278 - root to shoot ratio, TO:0000605 - hydrogen peroxide content, TO:0006002 - proline content, TO:0002662 - leaf rolling tolerance, TO:0000095 - osmotic response sensitivity, TO:0000449 - grain yield per plant, TO:0000590 - grain weight, TO:0001016 - relative chlorophyll content, TO:0000447 - filled grain number, TO:0000450 - grain yield per panicle, TO:0000352 - plant dry weight, TO:0000346 - tiller number, TO:0000455 - seed set percent, TO:0001013 - lateral root number, TO:0000011 - nitrogen sensitivity, TO:0000207 - plant height, TO:0000078 - root dry weight	
6238	NAR2.2	OsNAR2.2, OsNRT3.1B	ACTIVATOR FOR NRT2	activator for NRT2, high-affinity nitrate transporter-activating element 2.2	ACTIVATOR FOR NRT2		4	LOC_Os04g40410. Q7XK12. OsNRT3.1B in Plett et al. 2010.	 Vegetative organ - Root	Os04g0480200	LOC_Os04g40410.1				GO:0016021 - integral to membrane, GO:0010167 - response to nitrate, GO:0005886 - plasma membrane, GO:0015706 - nitrate transport, GO:0042128 - nitrate assimilation		
6242	NOP	OsNOP, OsC2DP53, C2DP53	NO POLLEN	no pollen gene, no pollen, C2 and GRAM domain containing protein, C2 Domain-Containing Protein 53	C2 AND GRAM DOMAIN CONTAINING PROTEIN OSNOP	Osnop, nop	6	AY702084. C2 and GRAM domain containing protein. PO:0006442; anther (sensu Poaceae) ; PO:0006345; pollen tube. GRO:0007198; panicle stage PA7 ; GRO:0007230; stamen stage ST6-5. KC610865-KC610877 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0607900	LOC_Os06g40570.1	GR:0080011			GO:0010152 - pollen maturation, GO:0016021 - integral to membrane, GO:0005739 - mitochondrion, GO:0048015 - phosphoinositide-mediated signaling, GO:0019722 - calcium-mediated signaling	TO:0000396 - grain yield, TO:0000245 - pollen free	PO:0009066 - anther , PO:0006345 - pollen tube 
6243	NRAMP1	OsNramp1, OsNRAMP1, OsNramp6	BACTERIOCIDE EFFECT 1	homologues of mammalian Nramp1 gene, Natural resistance-associated macrophage protein 1		osnramp1	7	L41217, S81897. D15268. integral membrane protein. Q0D7E4. TO:0006059: cadmium concentration. TO:0006059: cadmium content trait. TO:1000056: shoot system cadmium content. TO:1000030: root system cadmium content. TO:1000039: root system manganese content. TO:1000064: shoot system manganese content. TO:0006049: iron concentration. TO:0020089: iron content trait. TO:0006053: zinc concentration. TO:0006054: arsenic concentration. OsNramp6 in Liang et al. 2014. arsenic transport. NRAMP transporter (Fe/Mn/Cd/As transport). GO:1990641: response to iron ion starvation. GO:0090551: response to manganese starvation.	 Tolerance and resistance - Stress tolerance	Os07g0258400	LOC_Os07g15460.2, LOC_Os07g15460.1				GO:0009609 - response to symbiotic bacterium, GO:0046685 - response to arsenic, GO:0015691 - cadmium ion transport, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0055072 - iron ion homeostasis, GO:0010038 - response to metal ion, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0010040 - response to iron(II) ion, GO:0010039 - response to iron ion, GO:0055073 - cadmium ion homeostasis, GO:0055071 - manganese ion homeostasis, GO:0006828 - manganese ion transport, GO:0005381 - iron ion transmembrane transporter activity, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000224 - iron sensitivity	PO:0005421 - parenchyma , PO:0020141 - stem node , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0005645 - leaf mesophyll , PO:0000252 - endodermis , PO:0025034 - leaf , PO:0006203 - pericycle 
6244	NRAMP2	OsNramp2, OsNRAMP2	BACTERIOCIDE EFFECT 2	homologues of mammalian Nramp2 gene		OsNRAMP2-L, OsNRAMP2-H	3	L81152. integral membrane protein. Q10Q65. TO:0006059: cadmium content trait. GO:0097054: L-glutamate biosynthetic process.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os03g0208500	LOC_Os03g11010.1				GO:0006537 - glutamate biosynthetic process, GO:0016021 - integral to membrane, GO:0006811 - ion transport, GO:0005215 - transporter activity, GO:0009751 - response to salicylic acid stimulus, GO:0006523 - alanine biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009705 - plant-type vacuole membrane, GO:0015086 - cadmium ion transmembrane transporter activity, GO:0009088 - threonine biosynthetic process, GO:0009094 - L-phenylalanine biosynthetic process, GO:0055072 - iron ion homeostasis, GO:0010033 - response to organic substance, GO:0005384 - manganese ion transmembrane transporter activity, GO:0030001 - metal ion transport	TO:0002673 - amino acid content, TO:0000401 - plant growth hormone sensitivity	PO:0025034 - leaf 
6245	NRAMP3	OsNramp3, OsNRAMP3	BACTERIOCIDE EFFECT 3	homologues of mammalian Nramp3 gene, Integral membrane protein OsNramp3			6	U60767. integral membrane protein. Q653V6. TO:0006059: cadmium content trait. GO:0097054: L-glutamate biosynthetic process.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os06g0676000	LOC_Os06g46310.1, LOC_Os06g46310.2, LOC_Os06g46310.3				GO:0010033 - response to organic substance, GO:0030001 - metal ion transport, GO:0005215 - transporter activity, GO:0006537 - glutamate biosynthetic process, GO:0016020 - membrane, GO:0046686 - response to cadmium ion, GO:0055072 - iron ion homeostasis, GO:0006523 - alanine biosynthetic process, GO:0009088 - threonine biosynthetic process, GO:0016021 - integral to membrane, GO:0009094 - L-phenylalanine biosynthetic process	TO:0002673 - amino acid content	PO:0025034 - leaf 
6246	NRT1	OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9, OsNRT1.1B	NITRATE TRANSPORTER 1	nitrate transporter gene 1, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.9, PTR2-like gene	NITRATE TRANSPORTER 1		3	AF140606. peptide transporter (PTR) gene family. TO:0020094: nitrate content. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0235900	LOC_Os03g13274.3, LOC_Os03g13274.2, LOC_Os03g13274.4, LOC_Os03g13274.1				GO:0016020 - membrane, GO:0009620 - response to fungus, GO:0005215 - transporter activity, GO:0042594 - response to starvation, GO:0015103 - inorganic anion transmembrane transporter activity, GO:0009610 - response to symbiotic fungus, GO:0010167 - response to nitrate		PO:0009005 - root 
6247	NRT2.1	OsNRT2.1, OsNRT2.2	HIGH AFFINITY NITRATE TRANSPORTER	high-affinity nitrate transporter 2.1	HIGH AFFINITY NITRATE TRANSPORTER		2	AB008519. TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. OsNRT2.2 in Plett et al. 2010. TO:0020103: adventitious root length. GO:2000012: regulation of auxin polar transport.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os02g0112100 	LOC_Os02g02170.1				GO:0055085 - transmembrane transport, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0010618 - aerenchyma formation, GO:0009926 - auxin polar transport, GO:0010167 - response to nitrate, GO:0009693 - ethylene biosynthetic process, GO:0046688 - response to copper ion, GO:0009415 - response to water, GO:0015112 - nitrate transmembrane transporter activity	TO:0000276 - drought tolerance, TO:0000237 - water stress trait, TO:0000227 - root length, TO:0000457 - total biomass yield, TO:0000586 - seminal root length, TO:0000021 - copper sensitivity, TO:0000346 - tiller number, TO:0000396 - grain yield	
6248	NRT2.2	OsNRT2.2, OsNRT2.1	HIGH AFFINITY NITRATE TRANSPORTER	high-affinity nitrate transporter 2.2	HIGH AFFINITY NITRATE TRANSPORTER		2	TO:0020098: nitrate sensitivity. OsNRT2.1 in Plett et al. 2010.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0112600	LOC_Os02g02190.1				GO:0010167 - response to nitrate, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0015112 - nitrate transmembrane transporter activity	TO:0000276 - drought tolerance	
6249	HTNE	NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5	HIGH TEMPERATURE RESISTANT AND NITROGEN EFFICIENT	high-affinity nitrate transporter 2.3, high temperature resistant and nitrogen efficient	HIGH AFFINITY NITRATE TRANSPORTER	HTNE-1, HTNE-2, HTNE-3	1	OsNRT2;1 and OsNRT2;3a in Yan et al. 2014. OsNRT2;3a in Liu et al. 2014. OsNRT2;1 in Yang et al. 2014. OsNRT2.5 in Plett et al. 2010. TO:0020096: mineral and ion transport trait. TO:0000952: stem weight. GO:0090408: phloem nitrate loading. TO:0020100: nitrate uptake. TO:0020094: nitrate content.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Character as QTL - Plant growth activity,  Biochemical character,  Character as QTL - Yield and productivity	Os01g0704100 	LOC_Os01g50820.1				GO:0046688 - response to copper ion, GO:0010286 - heat acclimation, GO:0015112 - nitrate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006885 - regulation of pH, GO:0010618 - aerenchyma formation, GO:0010233 - phloem transport, GO:0006826 - iron ion transport, GO:0009408 - response to heat, GO:0005886 - plasma membrane, GO:0009620 - response to fungus, GO:0009414 - response to water deprivation, GO:0019740 - nitrogen utilization, GO:0009610 - response to symbiotic fungus, GO:0007165 - signal transduction, GO:0055085 - transmembrane transport, GO:0006817 - phosphate transport, GO:0070482 - response to oxygen levels, GO:0080093 - regulation of photorespiration, GO:0009413 - response to flooding, GO:0009733 - response to auxin stimulus, GO:0009268 - response to pH	TO:0006032 - panicle size, TO:0000259 - heat tolerance, TO:0000547 - primary branch number, TO:0000015 - oxygen sensitivity, TO:0000557 - secondary branch number, TO:0000021 - copper sensitivity, TO:0000113 - giant embryo, TO:0000511 - phosphorus uptake, TO:0000445 - seed number, TO:0000396 - grain yield, TO:0000276 - drought tolerance, TO:0000357 - growth and development trait, TO:0000163 - auxin sensitivity, TO:0000371 - yield trait, TO:0000180 - spikelet fertility, TO:0000457 - total biomass yield	PO:0005352 - xylem , PO:0025034 - leaf , PO:0005417 - phloem , PO:0009006 - shoot system , PO:0009005 - root 
6250	NRT2.4	OsNRT2.4	HIGH AFFINITY NITRATE TRANSPORTER	high-affinity nitrate transporter 2.4	HIGH AFFINITY NITRATE TRANSPORTER		1	a candidate gene for qLNA1-1 (QTL for N accumulation under low N conditions on chromosome 1). TO:0020098: nitrate sensitivity. TO:0020094: nitrate content. GO:1901698: response to nitrogen compound.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0547600	LOC_Os01g36720.1				GO:0060359 - response to ammonium ion, GO:0046688 - response to copper ion, GO:0048527 - lateral root development, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0042594 - response to starvation, GO:0015112 - nitrate transmembrane transporter activity, GO:0010167 - response to nitrate, GO:0048367 - shoot development	TO:0001012 - lateral root length, TO:0000021 - copper sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0001013 - lateral root number, TO:0000654 - shoot development trait, TO:0000011 - nitrogen sensitivity	PO:0009006 - shoot system , PO:0000016 - lateral root primordium , PO:0025205 - shoot system vascular system 
6251	P5CS	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1	P5C SYNTHETASE	delta1-pyrroline-5-carboxylate synthetase, Delta-1-pyrroline-5-carboxylate synthetase, pyrroline-5-carboxylate synthetase, proline carboxylate synthase 1, Aldehyde dehydrogenase 18B1	P5C SYNTHETASE	Osp5cs1	5	EC=2.7.2.11 Glutamate 5-kinase, GK, Gamma-glutamyl kinase. EC=1.2.1.41 Gamma-glutamyl phosphate reductase,   GPR, Glutamate-5-semialdehyde dehydrogenase, Glutamyl-gamma-semialdehyde dehydrogenase. O04226. AY574031. D49714. 	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Physiological traits - Taste,  Character as QTL - Grain quality	Os05g0455500	LOC_Os05g38150.2, LOC_Os05g38150.1				GO:0009269 - response to desiccation, GO:0009725 - response to hormone stimulus, GO:0006561 - proline biosynthetic process, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004349 - glutamate 5-kinase activity, GO:0019438 - aromatic compound biosynthetic process, GO:0010033 - response to organic substance, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0055114 - oxidation reduction, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress	TO:0006001 - salt tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000087 - aroma, TO:0002657 - oxidative stress, TO:0006002 - proline content, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000507 - osmotic adjustment capacity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
6252	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1, PAL3, OsPAL3	PHENYLALANINE AMMONIA-LYASE 1	phenylalanine ammonia-lyase, phenylalanine ammonia lyase 1, Phe ammonia lyase 1	PHENYLALANINE AMMONIA-LYASE 1		2	EC=4.3.1.24 P14717. X16099. GP-1 (genomic) and CP-1 (cDNA) in Minami et al. 1989. D48330. PAL2 in Xie el al. 2011. EF576408. GO:1901698: response to nitrogen compound. PAL3 in Wu et al. 2019.	 Coloration - Anthocyanin,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Biochemical character,  Vegetative organ - Leaf	Os02g0626100	LOC_Os02g41630.2	GR:0060593			GO:0002237 - response to molecule of bacterial origin, GO:0009411 - response to UV, GO:0009697 - salicylic acid biosynthetic process, GO:0009809 - lignin biosynthetic process, GO:0016211 - ammonia ligase activity, GO:0009408 - response to heat, GO:0046688 - response to copper ion, GO:0009698 - phenylpropanoid metabolic process, GO:0010266 - response to vitamin B1, GO:0009753 - response to jasmonic acid stimulus, GO:0009834 - secondary cell wall biogenesis, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009718 - anthocyanin biosynthetic process, GO:0009807 - lignan biosynthetic process, GO:0009642 - response to light intensity, GO:0048316 - seed development, GO:0016841 - ammonia-lyase activity, GO:0009058 - biosynthetic process, GO:0005737 - cytoplasm, GO:0006559 - L-phenylalanine catabolic process, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0009635 - response to herbicide	TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000424 - brown planthopper resistance, TO:0000175 - bacterial blight disease resistance, TO:0000031 - silicon sensitivity, TO:0000160 - UV light sensitivity, TO:0000624 - allelopathic effect, TO:0000731 - lignin content, TO:0000074 - blast disease, TO:0000058 - herbicide sensitivity, TO:0000460 - light intensity sensitivity, TO:0000733 - lignin biosynthesis trait, TO:0000326 - leaf color, TO:0000255 - sheath blight disease resistance, TO:0000021 - copper sensitivity, TO:0000051 - stem strength, TO:0000011 - nitrogen sensitivity	PO:0001170 - seed development stage 
6253	PHB1	OsPHB1	PROHIBITIN 1	prohibitin 1	PROHIBITIN 1		4		 Tolerance and resistance - Disease resistance	Os04g0462900	LOC_Os04g38900.2, LOC_Os04g38900.1				GO:0005743 - mitochondrial inner membrane, GO:0007005 - mitochondrion organization, GO:0006952 - defense response, GO:0005739 - mitochondrion		
6254	PIN	OsPIN	PROTEINASE INHIBITOR	proteinase inhibitor	PROTEINASE INHIBITOR				 Biochemical character						GO:0004857 - enzyme inhibitor activity		
6255	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5	PLASMA MEMBRANE INTRINSIC PROTEIN 1A	Aquaporin PIP1-1, Plasma membrane intrinsic protein 1-1, Plasma membrane intrinsic protein 1a, Water channel protein RWC1, plasma membrane intrinsic protein 1-5	PLASMA MEMBRANE INTRINSIC PROTEIN 1A	Ospip1;1	2	AP005108. Q6EU94. AB009665. BE607367, AJ224327. CK046160. Water channel protein (WCP-I). TO:0000905: seed yield. PIP1-5 in Sharma et al. 2015. one of the predicted targets for Osa-miR820. TO:0020093: nitrogen content.	 Biochemical character,  Vegetative organ - Leaf,  Character as QTL - Germination,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os02g0666200	LOC_Os02g44630.3, LOC_Os02g44630.2, LOC_Os02g44630.1				GO:0005886 - plasma membrane, GO:0009610 - response to symbiotic fungus, GO:0009609 - response to symbiotic bacterium, GO:0006970 - response to osmotic stress, GO:0034021 - response to silicon dioxide, GO:0009845 - seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005215 - transporter activity	TO:0000430 - germination rate, TO:0000370 - leaf width, TO:0000303 - cold tolerance, TO:0001015 - photosynthetic rate, TO:0002637 - leaf size, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000135 - leaf length, TO:0000095 - osmotic response sensitivity, TO:0000319 - rubisco content, TO:0000540 - leaf area, TO:0000276 - drought tolerance, TO:0000434 - root activity, TO:0000346 - tiller number	PO:0007057 - 0 seed germination stage , PO:0025034 - leaf 
6256	PIP2A	OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, PIP2;1, OsPIP2-1	PLASMA MEMBRANE INTRINSIC PROTEIN 2A	Probable aquaporin PIP2-1, Plasma membrane intrinsic protein 2-1, Plasma membrane intrinsic protein 2a	PLASMA MEMBRANE INTRINSIC PROTEIN 2A	pip2;1, Ospip2;1	7	plasma membrane intrinsic protein. AP003802. Q8H5N9. AF062393. GO:1905710: positive regulation of membrane permeability. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os07g0448800	LOC_Os07g26690.1, LOC_Os07g26690.2				GO:0006833 - water transport, GO:0034021 - response to silicon dioxide, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0005215 - transporter activity, GO:0046686 - response to cadmium ion, GO:0005783 - endoplasmic reticulum, GO:0045824 - negative regulation of innate immune response, GO:0030104 - water homeostasis, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000370 - leaf width, TO:0000522 - stomatal conductance, TO:0002637 - leaf size, TO:0000276 - drought tolerance, TO:0000540 - leaf area, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000394 - drought related trait, TO:0000135 - leaf length	PO:0025034 - leaf 
6257	PIPK1	OsPIPK1, PIP5K	PHOSPHATIDYLINOSITOL MONOPHOSPHATE KINASE 1	rice phosphatidylinositol monophosphate kinase1, Phosphatidylinositol-4-phosphate 5-kinase 1, 1-phosphatidylinositol-4-phosphate kinase, PtdIns(4)P-5-kinase, Diphosphoinositide kinase	PHOSPHATIDYLINOSITOL MONOPHOSPHATE KINASE 1		3	EC=2.7.1.68 Q6EX42.	 Biochemical character	Os03g0701800	LOC_Os03g49510.1				GO:0005524 - ATP binding, GO:0030154 - cell differentiation, GO:0046488 - phosphatidylinositol metabolic process, GO:0009908 - flower development, GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle		
6259	PK7	OsPK7, OsPK07, OsCIPK12, CIPK12, OsSnRK3.6, SnRK3.6	PROTEIN KINASE 7	protein kinase 7, CBL-interacting protein kinase 12, CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 12, Sucrose nonfermenting-1-related protein kinase 3.6	PROTEIN KINASE 7		1	EC=2.7.11.1 Q5JLS2. AB011968.	 Biochemical character	Os01g0759400	LOC_Os01g55450.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding		
6262	PP1	OsPP1c	PROTEIN PHOSPHATASE 1	protein phosphatase 1 catalytic subunit	PROTEIN PHOSPHATASE 1				 Biochemical character						GO:0004721 - phosphoprotein phosphatase activity		
6263	PP2A-1	OsPP2A-1, PP2A1, OsPP88	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT 1	protein phosphatase 2A catalytic subunit 1, Serine/threonine-protein phosphatase PP2A-1 catalytic subunit, Protein phosphatase 88	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNITS		6	EC=3.1.3.16 AF097182. A2YEB4(indica), Q0DBD3(japonica). LOC_Os06g37660.	 Biochemical character	Os06g0574500	LOC_Os06g37660.1				GO:0005506 - iron ion binding, GO:0005737 - cytoplasm, GO:0004721 - phosphoprotein phosphatase activity, GO:0030145 - manganese ion binding		
6264	PP2A-3	OsPP2A-3, PP2A3, OsPP20	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT 3	protein phosphatase 2A catalytic subunit 3, Serine/threonine-protein phosphatase PP2A-3 catalytic subunit, Protein phosphatase 20	PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNITS		2	EC=3.1.3.16 AF159061. A2X2G3(indica), Q0E2S4(japonica). LOC_Os02g12580.	 Biochemical character	Os02g0217600	LOC_Os02g12580.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0005506 - iron ion binding, GO:0030145 - manganese ion binding, GO:0005737 - cytoplasm		
6265	PP2A	OsPP2Ac	PROTEIN PHOSPHATASE 2A	protein phosphatase 2A catalytic subunits	PROTEIN PHOSPHATASE 2A				 Biochemical character						GO:0004721 - phosphoprotein phosphatase activity		
6266	PPC	Osppc-b	PHOSPHOENOLPYRUVATE CARBOXYLASE	phosphoenolpyruvate carboxylase, bacterial-type PEPC	PHOSPHOENOLPYRUVATE CARBOXYLASE			EC 4.1.1.31	 Biochemical character						GO:0008964 - phosphoenolpyruvate carboxylase activity		
6267	PPCK1	OsPPCK1	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE1	phosphoenol pyruvate carboxylase kinase1, phosphoenolpyruvate carboxylase kinase 1	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE1		2	GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0807000	LOC_Os02g56310.1				GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0046777 - protein amino acid autophosphorylation, GO:0018105 - peptidyl-serine phosphorylation, GO:0009931 - calcium-dependent protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0009738 - abscisic acid mediated signaling, GO:0005515 - protein binding, GO:0005516 - calmodulin binding, GO:0005524 - ATP binding, GO:0004683 - calmodulin-dependent protein kinase activity, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	
6268	PPCK2	OsPPCK2, OsPPCK2L, OsPPCK2S	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE2	phosphoenol pyruvate carboxylase kinase2, phosphoenolpyruvate carboxylase kinase 2	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE2		2	AB233452, AB233453.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0625300	LOC_Os02g41580.1				GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005515 - protein binding, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
6269	PPR1	OsPPR1, rPPR1	PENTATRICOPEPTIDE REPEAT PROTEIN 1	pentatricopeptide repeat protein gene-1	PENTATRICOPEPTIDE REPEAT PROTEIN 1		9	AY584749. GO:0080156: mitochondrial mRNA modification.	 Biochemical character	Os09g0413300 	LOC_Os09g24680.1				GO:0005739 - mitochondrion, GO:0009451 - RNA modification, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0043231 - intracellular membrane-bounded organelle		
6270	TPP1	OsTPP1, OsTPS, TPP	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 1	Trehalose-6-phosphate phosphatase 1, trehalose 6-P synthase, Tre6P phosphatase 1	TREHALOSE-6-PHOSPHATE PHOSPHATASE 1	tpp1	2	Q75WV3. AB120515. BAD12596. EU559275.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Biochemical character	Os02g0661100	LOC_Os02g44235.1, LOC_Os02g44230.4, LOC_Os02g44230.2, LOC_Os02g44230.1, LOC_Os02g44230.3				GO:0010029 - regulation of seed germination, GO:0042542 - response to hydrogen peroxide, GO:0010182 - sugar mediated signaling, GO:0033500 - carbohydrate homeostasis, GO:0009651 - response to salt stress, GO:0005992 - trehalose biosynthetic process, GO:0006970 - response to osmotic stress, GO:0070415 - trehalose metabolism in response to cold stress, GO:0004805 - trehalose-phosphatase activity, GO:0009409 - response to cold, GO:0009738 - abscisic acid mediated signaling, GO:0046345 - abscisic acid catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0010353 - response to trehalose stimulus, GO:0009413 - response to flooding	TO:0006003 - oligosaccharide content, TO:0000207 - plant height, TO:0000227 - root length, TO:0000397 - grain size, TO:0000291 - carbohydrate content, TO:0000095 - osmotic response sensitivity, TO:0001015 - photosynthetic rate, TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000430 - germination rate, TO:0006001 - salt tolerance, TO:0002667 - abscisic acid content, TO:0000396 - grain yield, TO:0000615 - abscisic acid sensitivity, TO:0002759 - grain number, TO:0001018 - transpiration rate	PO:0007057 - 0 seed germination stage 
6274	PR1A	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1, OsPR1b, PR1alpha, OsPR1alpha	PATHOGENESIS-RELATED GENE 1A	pathogenesis-related gene 1a, acidic PR protein 1, PR protein 1, acidic pathogenesis-related protein 1, pathogenesis-related 1a protein, Sperm Coating Protein	PATHOGENESIS-RELATED PROTEIN 1A		7	AJ278436. AU163470. AF251277. EF061246. GO:1901002: positive regulation of response to salt stress. GO:2000070: regulation of response to water deprivation. a member of SCP/TAPS (Sperm Coating Protein/Tpx-1/Ag5/PR-1/Sc7) protein family. OsPR1 in Kaur et al. 2017. OsPR1b in Qiu et al. 2021, Feng et al. 2022.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os07g0129200	LOC_Os07g03710.1				GO:0009651 - response to salt stress, GO:0005576 - extracellular region, GO:0016036 - cellular response to phosphate starvation, GO:0002213 - defense response to insect, GO:0009609 - response to symbiotic bacterium, GO:0042742 - defense response to bacterium, GO:0080134 - regulation of response to stress, GO:0006950 - response to stress, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0006979 - response to oxidative stress, GO:0002237 - response to molecule of bacterial origin, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0002215 - defense response to nematode, GO:0002221 - pattern recognition receptor signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0009620 - response to fungus	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000384 - nematode damage resistance, TO:0000255 - sheath blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000102 - phosphorus sensitivity, TO:0000031 - silicon sensitivity, TO:0000424 - brown planthopper resistance, TO:0002657 - oxidative stress	
6277	PR1B	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1, OsPR1a, PR1a	PATHOGENESIS-RELATED GENE 1B	pathogenesis-related gene 1b, PR1 basic, Pathogenesis-related protein class 1 basic gene, basic PR protein 1, Pathogenesis-related protein class 1, pathogenesis-related 1 protein	PATHOGENESIS-RELATED PROTEIN 1B		1	U89895. BF889437. EF061247. PR1 in Yin et al. 2000, Qin et al. 2018, Campbell & Ronald 2005, Xu and He 2007, Hou et al. 2014, Zhou et al. 2017. GO:0071731: response to nitric oxide. OsPR1a in Zhao et al. 2020, Feng et al. 2022.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os01g0382000	LOC_Os01g28450.1				GO:0005576 - extracellular region, GO:0042594 - response to starvation, GO:0051607 - defense response to virus, GO:0006952 - defense response, GO:0006950 - response to stress, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009609 - response to symbiotic bacterium, GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0016036 - cellular response to phosphate starvation	TO:0000172 - jasmonic acid sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0000102 - phosphorus sensitivity, TO:0000424 - brown planthopper resistance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0000173 - ethylene sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root 
6280	PR4	OsPR4, OsPR4a, PR4a, OsPR-4	PATHOGENESIS-RELATED GENE 4	pathogenesis-related gene 4, pathogenesis-related type 4, pathogenesis-related protein 4a, PR protein 4a	PATHOGENESIS-RELATED PROTEIN 4		11	AY050642.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0592200	LOC_Os11g37970.1				GO:0080027 - response to herbivore, GO:0009627 - systemic acquired resistance, GO:0009615 - response to virus, GO:0009723 - response to ethylene stimulus, GO:0009817 - defense response to fungus, incompatible interaction, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0006950 - response to stress	TO:0000424 - brown planthopper resistance	
6284	PTF1	OsPTF1, OsbHLH096, bHLH96	PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1	Pi starvation-induced transcription factor-1, bHLH transcription factor PTF1, basic helix-loop-helix protein 096	PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1		6	bHLH transcription factor. AY238991. a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene.	 Tolerance and resistance - Stress tolerance	Os06g0193400 	LOC_Os06g09370.1, LOC_Os06g09370.2, LOC_Os06g09370.3				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009628 - response to abiotic stimulus, GO:0016036 - cellular response to phosphate starvation, GO:0045449 - regulation of transcription, GO:0042594 - response to starvation, GO:0030528 - transcription regulator activity, GO:0005634 - nucleus	TO:0000168 - abiotic stress trait	
6285	RAA1	OsRAA1, OsFPFL1, FPFL1	ROOT ARCHITECTURE ASSOCIATED 1	root architecture associated-1, FPF1-like protein 1, FPF1-like 1, flowering-promoting factor 1-like 1			1	AY659938. Q9LGE3. GO:2000280: regulation of root development.	 Character as QTL - Root activity	Os01g0257300	LOC_Os01g15340.1				GO:0009911 - positive regulation of flower development, GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0005525 - GTP binding, GO:0048364 - root development, GO:0009739 - response to gibberellin stimulus, GO:0005737 - cytoplasm, GO:0045841 - negative regulation of mitotic metaphase/anaphase transition	TO:0000656 - root development trait	PO:0007520 - root development stage 
6290	RAC3	OsRac3	RAC/ROP-TYPE GTPASE 3	small GTP-binding protein 3, Rac-like GTP-binding protein 3	RAC/ROP-TYPE GTPASE 3		2	AB029510. Q6Z808. GO:1903409: reactive oxygen species biosynthetic process. GO:1902890: regulation of root hair elongation.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0742200	LOC_Os02g50860.1				GO:0009736 - cytokinin mediated signaling, GO:0005737 - cytoplasm, GO:0019898 - extrinsic to membrane, GO:0043226 - organelle, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0048767 - root hair elongation, GO:0007264 - small GTPase mediated signal transduction	TO:0000112 - disease resistance, TO:0002665 - root hair length, TO:0000276 - drought tolerance	PO:0007519 - 5 root hair formation stage , PO:0009006 - shoot system , PO:0009066 - anther , PO:0020148 - shoot apical meristem , PO:0000256 - root hair cell , PO:0000230 - inflorescence meristem 
6291	RAC5	Osrac5, OsRac5, RACD, OsRacD, OsRACD	RAC/ROP-TYPE GTPASE 5	small GTP-binding protein 5, Rac-like GTP-binding protein 5, GTPase protein RacD	RAC/ROP-TYPE GTPASE 5		2	Q6EP31. AF329814. small GTP-binding protein. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os02g0834000	LOC_Os02g58730.1, LOC_Os02g58730.2				GO:0050832 - defense response to fungus, GO:0009416 - response to light stimulus, GO:0007602 - phototransduction, GO:0005525 - GTP binding, GO:0005737 - cytoplasm, GO:0019898 - extrinsic to membrane, GO:0007264 - small GTPase mediated signal transduction	TO:0000074 - blast disease, TO:0000009 - genic male sterility-photoperiod sensitive	PO:0009066 - anther 
6292	RAC7	OSRAC7, OsRac7, ROP5, OsRop5	RAC/ROP-TYPE GTPASE 7	small GTP-binding protein 7, Rac-like GTP-binding protein 7, GTPase protein ROP5	RAC/ROP-TYPE GTPASE 7		2	Q6Z7L8. AF376055.	 Biochemical character	Os02g0312600	LOC_Os02g20850.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005737 - cytoplasm, GO:0019898 - extrinsic to membrane, GO:0005525 - GTP binding		PO:0009066 - anther , PO:0000256 - root hair cell 
6293	RAC6	OsRacB, RacB, OsRac6	RAC/ROP-TYPE GTPASE 6	Rac-like GTP-binding protein 6, GTPase protein RacB	RAC/ROP-TYPE GTPASE 6		2	Q6ZHA3. AY579208.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0120800	LOC_Os02g02840.1				GO:0005737 - cytoplasm, GO:0007264 - small GTPase mediated signal transduction, GO:0019898 - extrinsic to membrane, GO:0005525 - GTP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009047 - stem , PO:0000256 - root hair cell , PO:0009005 - root , PO:0009037 - lemma , PO:0009038 - palea 
6295	SPL	OsSPL	RICE SQUAMOSA PROMOTER-BINDING-LIKE	rice SQUAMOSA promoter-binding-like, SQUAMOSA promoter-binding-like transcription factor	SQUAMOSA PROMOTER-BINDING-LIKE TRANSCRIPTION FACTOR				 Other						GO:0008270 - zinc ion binding, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding, GO:0005634 - nucleus		
6296	SPY	OsSPY	SPINDLY	Spindly, Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	PROBABLE UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY		8	O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE. O-linked N-acetylglucosamine transferase. EC=2.4.1.- Q6YZI0. RO:0007048; 04-stem elongation stage. TO:0000847: panicle inflorescence morphology trait. TO:0000740: branch morphology trait.	 Reproductive organ - panicle,  Reproductive organ - Inflorescence,  Vegetative organ - Culm	Os08g0559300	LOC_Os08g44510.1	GR:0080023			GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009739 - response to gibberellin stimulus, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0005488 - binding, GO:0009938 - negative regulation of gibberellic acid mediated signaling	TO:0000547 - primary branch number, TO:0000152 - panicle number, TO:0000557 - secondary branch number, TO:0000456 - spikelet number, TO:0000040 - panicle length, TO:0000201 - panicle color, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000166 - gibberellic acid sensitivity, TO:0006032 - panicle size, TO:0000576 - stem length, TO:0000207 - plant height	PO:0000230 - inflorescence meristem , PO:0020142 - stem internode , PO:0009049 - inflorescence 
6297	SUT1	OsSUT1, OsSUT2	SUCROSE TRANSPORTER 1	Sucrose transporter-1, Sucrose transporter 1, sucrose transport protein 1	SUCROSE TRANSPORTER 1	SUT1-1, SUT1-2, Ossut1	3	SUT1-2 is an allele encoding rice sucrose transporter 1, and causes good grain filling in extra-heavy panicle type (for example in a cultivar Milyang 23). AF280050. AB551389. D87819. Q9LKH3. Q10R54. sucrose transporter. PO:0000003; whole plant. OsSUT2 in Lu et al. 2017. GO:0052575: carbohydrate localization. TO:0020111: ovary development trait. TO:1000022: anther morphology trait.	 Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Seed - Physiological traits - Storage substances,  Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance	Os03g0170900	LOC_Os03g07480.2, LOC_Os03g07480.3, LOC_Os03g07480.4, LOC_Os03g07480.1	GR:0061315			GO:0002215 - defense response to nematode, GO:0048608 - reproductive structure development, GO:0008515 - sucrose transmembrane transporter activity, GO:0048653 - anther development, GO:0015770 - sucrose transport, GO:0009733 - response to auxin stimulus, GO:0051899 - membrane depolarization, GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0005364 - maltose:hydrogen symporter activity, GO:0009414 - response to water deprivation, GO:0008519 - ammonium transmembrane transporter activity, GO:0015293 - symporter activity, GO:0008506 - sucrose:hydrogen symporter activity, GO:0042950 - salicin transmembrane transporter activity, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009901 - anther dehiscence, GO:0009915 - phloem loading, GO:0030104 - water homeostasis, GO:0009413 - response to flooding, GO:0005985 - sucrose metabolic process, GO:0009846 - pollen germination, GO:0005887 - integral to plasma membrane	TO:0000163 - auxin sensitivity, TO:0000207 - plant height, TO:0006023 - lodicule development trait, TO:0000516 - relative root length, TO:0000401 - plant growth hormone sensitivity, TO:0000136 - relative water content, TO:0000286 - submergence sensitivity, TO:0000259 - heat tolerance, TO:0000333 - sugar content, TO:0000605 - hydrogen peroxide content, TO:0002661 - seed maturation, TO:0000143 - relative biomass, TO:0000657 - spikelet anatomy and morphology trait, TO:0000384 - nematode damage resistance, TO:0000328 - sucrose content, TO:0000644 - relative root dry weight, TO:0000276 - drought tolerance, TO:0000696 - starch content, TO:0000266 - chalky endosperm, TO:0000636 - relative shoot dry weight, TO:0000095 - osmotic response sensitivity	PO:0025530 - reproductive shoot system development stage , PO:0001035 - G anther dehiscence stage , PO:0000003 - whole plant , PO:0001004 - anther development stage , PO:0001049 - lodicule development stage 
6298	TATC	OsTATC, OsTatC, TatC	SEC-INDEPENDENT PROTEIN TRANSLOCASE SUBUNIT C	homologue of E. coli TATC, Sec-independent protein translocase subunit C	SEC-INDEPENDENT PROTEIN TRANSLOCASE SUBUNIT C		1	AB050885. PO:0009006; shoot ; PO:0009025; leaf. GRO:0007142; 1-4 leaf stage. LOC_Os01g31680. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Tolerance and resistance - Stress tolerance	Os01g0501700	LOC_Os01g31680.1, LOC_Os01g31680.2	GR:0101258			GO:0009536 - plastid, GO:0008565 - protein transporter activity, GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity, GO:0009688 - abscisic acid biosynthetic process, GO:0009306 - protein secretion, GO:0016020 - membrane	TO:0000295 - chlorophyll-b content, TO:0000495 - chlorophyll content, TO:0000394 - drought related trait, TO:0000478 - abscisic acid concentration, TO:0000293 - chlorophyll-a content	PO:0009025 - vascular leaf , PO:0009006 - shoot system 
6299	TMK	OsTMK	TRANSMEMBRANE KINASE	transmembrane kinase	TRANSMEMBRANE KINASE		3		 Biochemical character	Os03g0717000	LOC_Os03g50810.1				GO:0009739 - response to gibberellin stimulus, GO:0005524 - ATP binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity		
6300	TUBA1	OsTubA1, TubA1, OS-TubA3, TubA3	TUBULIN ALPHA-1 CHAIN	Tubulin alpha-1 chain, Tubulin alpha-1	TUBULIN ALPHA-1 CHAIN		7	X91808. P28752. OS-TubA3 in Qin et al. 1997. tubulin/FtsZ domain- containing protein.	 Seed - Physiological traits - Dormancy,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0574800	LOC_Os07g38730.1				GO:0005737 - cytoplasm, GO:0005198 - structural molecule activity, GO:0009845 - seed germination, GO:0007017 - microtubule-based process, GO:0016049 - cell growth, GO:0005200 - structural constituent of cytoskeleton, GO:0007018 - microtubule-based movement, GO:0003924 - GTPase activity, GO:0009266 - response to temperature stimulus, GO:0005874 - microtubule, GO:0051258 - protein polymerization, GO:0005525 - GTP binding, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000432 - temperature response trait	PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
6301	WAK	OsWAK	WALL-ASSOCIATED KINASE GENE	wall-associated kinase gene	WALL-ASSOCIATED KINASE				 Biochemical character						GO:0004674 - protein serine/threonine kinase activity		
6303	WRKY51	OsWRKY51	WRKY GENE 51	Rice WRKY gene51	TRANSCRIPTION FACTOR WRKY51		4	BK005054. WRKY50 in Qiu et al. 2004. WRKY42 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY40 in Wu et al. (2005). HQ858832. GO:1900426: positive regulation of defense response to bacterium. 	 Tolerance and resistance - Disease resistance	Os04g0287400	LOC_Os04g21950.1				GO:0006999 - nuclear pore organization, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0009751 - response to salicylic acid stimulus, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
6304	WRKY71	OsWRKY71, WRKY-71	WRKY GENE 71	Rice WRKY gene71, Rice WRKY gene 71, Transcription factor WRKY71	TRANSCRIPTION FACTOR WRKY71	wrky71, wrky71-5-9, wrky71-2-1, wrky71-3-3, wrky71-6-2	2	AY676927, BK005074. AY541677. Q6QHD1. AB190817. GRO:0007047; 02-seedling ; GRO:0007142; 1-4 leaf stage ; GRO:0007045; 09-mature grain stage. WRKY18 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY25 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Character as QTL - Germination	Os02g0181300	LOC_Os02g08440.4, LOC_Os02g08440.3, LOC_Os02g08440.2, LOC_Os02g08440.1	GR:0080004			GO:0003677 - DNA binding, GO:0045449 - regulation of transcription, GO:0043565 - sequence-specific DNA binding, GO:0002213 - defense response to insect, GO:0009685 - gibberellin metabolic process, GO:0006952 - defense response, GO:0009620 - response to fungus, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0009629 - response to gravity, GO:0009413 - response to flooding, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000524 - submergence tolerance, TO:0002693 - gravity response trait, TO:0000276 - drought tolerance, TO:0000205 - white-backed planthopper resistance, TO:0000424 - brown planthopper resistance	PO:0006339 - juvenile vascular leaf , PO:0005360 - aleurone layer , PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage , PO:0020104 - leaf sheath , PO:0025034 - leaf 
6310	YAB1	OsYAB1, FIL1, osFIL1	YABBY1	YABBY1 gene, YABBY 1, OsYABBY1, Os YABBY1, FILAMENTOUS FLOWER 1, Protein YABBY 1, Protein FILAMENTOUS FLOWER 1, FIL homolog 1	PROTEIN YABBY 1		7	Q7XIM7. AF098752. PO:0004705; stamen primordium ; PO:0004703; carpel primordium. GRO:0007178; ovule stage OV0 ; GRO:0007209; stamen stage ST0 ; GRO:0007157; panicle development.	 Other	Os07g0160100	LOC_Os07g06620.4, LOC_Os07g06620.3, LOC_Os07g06620.2, LOC_Os07g06620.1	GR:0080014			GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0048833 - specification of floral organ number, GO:0005634 - nucleus, GO:0030154 - cell differentiation	TO:0000223 - pistil anatomy and morphology trait, TO:0000225 - stamen number	PO:0009037 - lemma , PO:0004703 - carpel primordium , PO:0004705 - stamen primordium , PO:0009038 - palea 
6311	ZIP1	OsZIP1	ZINC TRANSPORTER 1	zinc transporter 1, Zrt-Irt-like protein 1, Zinc-regulated transporter 1, ZRT-IRT-related protein 1, ZIP transporter 1, Zinc- and iron-regulating transport-like protein 1, Zn- and Fe-regulating transport-like protein 1	ZINC TRANSPORTER 1	oszip1	1	AY302058. PO:0005020; vascular bundle ; PO:0000036; leaf vascular system ; PO:0009005; root ; PO:0009025; leaf. GRO:0007139; A-vegetative stage. TO:0006059: cadmium content trait. TO:0020090: zinc content trait. TO:0020092: copper content trait. TO:0006053: zinc concentration. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0972200	LOC_Os01g74110.1	GR:0101281			GO:0010269 - response to selenium ion, GO:0010043 - response to zinc ion, GO:0016020 - membrane, GO:0046686 - response to cadmium ion, GO:0005783 - endoplasmic reticulum, GO:0046688 - response to copper ion, GO:0016021 - integral to membrane, GO:0010042 - response to manganese ion, GO:0046583 - cation efflux transmembrane transporter activity, GO:0005385 - zinc ion transmembrane transporter activity, GO:0006829 - zinc ion transport, GO:0005886 - plasma membrane	TO:0000351 - zinc sensitivity, TO:0000032 - selenium sensitivity, TO:0000073 - manganese sensitivity	PO:0009025 - vascular leaf , PO:0009005 - root , PO:0000036 - leaf vascular system , PO:0005020 - vascular bundle 
6312	ZIP2	OsZIP2, OsZIP11, ZIP11	ZINC TRANSPORTER 2	zinc transporter 2, Zrt-Irt-like protein 2, Zinc-regulated transporter 2, zinc transporter 11, Zrt-Irt-like protein 11, ZRT-IRT-related protein 2, ZIP transporter 2, Zinc- and iron-regulating transport-like protein 2, Zn- and Fe-regulating transport-like protein 2	ZINC TRANSPORTER 2		3	AY302059. Q852F6. OsZIP11 in Narayan et al. 2007. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0411800	LOC_Os03g29850.1	GR:0101282			GO:0046873 - metal ion transmembrane transporter activity, GO:0010042 - response to manganese ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0005739 - mitochondrion, GO:0046686 - response to cadmium ion, GO:0006829 - zinc ion transport, GO:0010269 - response to selenium ion, GO:0005886 - plasma membrane	TO:0000073 - manganese sensitivity, TO:0000032 - selenium sensitivity, TO:0000351 - zinc sensitivity	
6314	OVC	Ovc, Ovc(t)	OVICIDAL	Ovicidal effect to whitebacked planthopper			6	Ovicidal effect on white-backed planthopper. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060591			GO:0009625 - response to insect	TO:0000205 - white-backed planthopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
6317	PHYB	phyB, PHYB1, OsPHYB, OsphyB, OsYHB, YHB, OsPHYB/OsYHB	PHYTOCHROME B	PhytochromeB, Phytochrome B	PHYTOCHROME B	phyb, osphyB, phyB-1, phyB-2, phyB-3, phyB-4, phyB-5, phyB-6	3	A2XFW2 (indica), Q10MG9 (japonica). AB109892 (Japonica). JN594127-JN594211 (O. sativa and other wild rice species). CL523988 (phyB-6). MT460250 - MT460374. a rice ortholog of Arabidopsis gene for circadian clock component. NCBI Gene Expression Omnibus with an accession number GSE36320. GO:2000028: regulation of photoperiodism, flowering.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Vegetative organ - Culm,  Reproductive organ - Heading date	Os03g0309200	LOC_Os03g19590.1				GO:0007600 - sensory perception, GO:0008020 - G-protein coupled photoreceptor activity, GO:0009414 - response to water deprivation, GO:0042803 - protein homodimerization activity, GO:0030912 - response to deep water, GO:0010114 - response to red light, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0042744 - hydrogen peroxide catabolic process, GO:0016020 - membrane, GO:0018106 - peptidyl-histidine phosphorylation, GO:0000155 - two-component sensor activity, GO:0009585 - red, far-red light phototransduction, GO:0009658 - chloroplast organization, GO:0018298 - protein-chromophore linkage, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0005524 - ATP binding, GO:0048573 - photoperiodism, flowering, GO:0009881 - photoreceptor activity, GO:0017006 - protein-tetrapyrrole linkage, GO:0007623 - circadian rhythm, GO:0009640 - photomorphogenesis	TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0002616 - flowering time, TO:0000158 - red light sensitivity, TO:0000346 - tiller number, TO:0002715 - chloroplast development trait, TO:0000586 - seminal root length, TO:0000298 - chlorophyll ratio, TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content, TO:0000135 - leaf length, TO:0000447 - filled grain number, TO:0002710 - root shape, TO:0000566 - stomatal frequency, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0002685 - crown root number, TO:0000137 - days to heading	
6319	LHD3	PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3	LATE HEADING DATE 3	PhytochromeC, Phytochrome C, late heading date 3	PHYTOCHROME C	phyC-1, lhd3	3	A2XM23(indica), Q10CQ8(japonica). AB018442(Japonica). U61207. a rice ortholog of Arabidopsis gene for circadian clock component.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Heading date,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os03g0752100	LOC_Os03g54084.1				GO:0018298 - protein-chromophore linkage, GO:0018106 - peptidyl-histidine phosphorylation, GO:0048574 - long-day photoperiodism, flowering, GO:0007600 - sensory perception, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016020 - membrane, GO:0017006 - protein-tetrapyrrole linkage, GO:0048575 - short-day photoperiodism, flowering, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0048573 - photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0000155 - two-component sensor activity, GO:0009416 - response to light stimulus, GO:0005524 - ATP binding, GO:0008020 - G-protein coupled photoreceptor activity, GO:0009585 - red, far-red light phototransduction, GO:0006350 - transcription, GO:0009648 - photoperiodism, GO:0009646 - response to absence of light, GO:0042803 - protein homodimerization activity, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010228 - vegetative to reproductive phase transition	TO:0000460 - light intensity sensitivity, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000075 - light sensitivity, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000241 - leaf number, TO:0000346 - tiller number	
6322	PI2 -> see PIZ	Pi2(t)	PYRICULARIA ORYZAE RESISTANCE 2	Pyricularia oryzae resistance 2, Magnaporthe grisea resistance 2, Blast resistance 2			6		 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6325	PI36	Pi36(t), Pi36	PYRICULARIA ORYZAE RESISTANCE	Pyricularia oryzae resistance 36, Magnaporthe grisea resistance 36, Blast resistance 36	NUCLEOTIDE-BINDING SITE LEUCINE-RICH REPEAT PROTEIN		8	LOC_Os08g05440. DQ900896(O. sativa Indica Group, Kasalath). Original line is Q61. Map position (21.6-25.2 cM). ABI64281	 Tolerance and resistance - Disease resistance	Os08g0150150					GO:0006952 - defense response, GO:0009620 - response to fungus, GO:0043531 - ADP binding		
6326	PI37	Pi37(t), Pi37	PYRICULARIA ORYZAE RESISTANCE 37	Pyricularia oryzae resistance 37, Magnaporthe grisea resistance 37, Blast resistance 37	NUCLEOTIDE-BINDING SITE LEUCINE-RICH REPEAT PROTEIN		1	Pi37 encodes a nucleotide binding site leucine-rich repeat protein. mapped between RM319 and RM302, DQ923494. LOC_Os01g57310. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os01g0781700	LOC_Os01g57310.1, LOC_Os01g57310.2				GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0009620 - response to fungus		
6329	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)	PYRICULARIA ORYZAE RESISTANCE CO39	Pyricularia oryzae resistance CO39(Indica), Magnaporthe grisea resistance CO39, Blast resistance CO39			11		 Tolerance and resistance - Disease resistance					49.1	GO:0009620 - response to fungus		
6330	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)	PYRICULARIA ORYZAE RESISTANCE D1	Pyricularia oryzae resistance d1, Magnaporthe grisea resistance d1, Blast resistance d1			2	Original line is Digu (Indica). Map position (87.5-89.9 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6332	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t), SDRLK-PID2, OsSDRLK-PID2	PYRICULARIA ORYZAE RESISTANCE D2	Pyricularia oryzae resistance d2, Magnaporthe grisea resistance d2, Blast resistance d2, PI-D2 protein kinase, S-Domain receptor like kinase-PID2	BETA-LECTIN RECEPTOR KINASE		6	Pi-d2 encodes a serine-threonine-RLK membrane-spanning protein. Pi-d2 contains a predicted extracellular bulb-type mannose specific binding lectin (B-lectin) domain. Original line is Digu (Indica). FJ915121.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0494100	LOC_Os06g29810.1, LOC_Os06g29810.2, LOC_Os06g29810.3			65.8	GO:0005886 - plasma membrane, GO:0009620 - response to fungus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0012501 - programmed cell death, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease	PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem 
6334	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh	PYRICULARIA ORYZAE RESISTANCE KH	Pyricularia oryzae resistance, Magnaporthe grisea resistance kh, Blast resistance kh			11	Pi-kh is one of the alleles in the Pi-k locus. Original line is HR-22 and K3 (Indica) for Pi-kh and Taipei 309 (Indica) for Pi54. EF532592 (Peiai64). AY914077. HE589445 (Oryza rhizomatis pi54). Pi54rh is the Oryza rhizomatis ortholog of Oryza sativa Pi54. Pi-kh was renamed Pi54, because Pi-kh is ~2.5Mbp away from the Pik Locus (Sharma et al. 2010). GU258499- GU258508.	 Tolerance and resistance - Disease resistance	Os11g0639100	LOC_Os11g42010.1			101.9	GO:0009620 - response to fungus, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
6336	PIY1	Pi-y1(t), Pi-y(t), Piy1(t)	PYRICULARIA GRISEA RESISTANCE Y 1	Pyricularia oryzae resistance y1, Magnaporthe grisea resistance y1, Blast resistance y1			2	Original line is Yanxian No.1 (Indica).  Map position (153.2-154.1 cM). Pi-y(t) in Huang 2005 and Pi-y1(t) in Lei et al. 2005. The results indicated that the two gene Pi-y1(t) and Pi-y2(t) could be one same gene in that their positions is too close, designated tentatively as Pi-y(t) (Lei et al. 2005).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6342	PPCK3	OsPPCK3	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE 3	phosphoenol pyruvate carboxylase kinase 3	PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE3			AB234234.	 Biochemical character						GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0005515 - protein binding		
6343	PR1	OsPR1	PATHOGEN RESPONSE GENE 1	Pathogen response genes	PATHOGEN RESPONSE PROTEIN 1 				 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0006950 - response to stress		
6344	PSR1	PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2	PROMOTOR OF SHOOT REGENERATION 1	"Promotor of shoot regeneration-1, ferredoxin-nitrite reductase, \"Ferredoxin--nitrite reductase, chloroplastic\""	FERREDOXIN-NITRITE REDUCTASE		1	D50556. Q42997. EC=1.7.7.1 OsNIR1 in Wang et al. 2018, Hu et al. 2019. OsNiR2 in Wang et al. 2020, Gao et al. 2023.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character,  Character as QTL	Os01g0357100	LOC_Os01g25484.3, LOC_Os01g25484.2, LOC_Os01g25484.1				GO:0007584 - response to nutrient, GO:0009507 - chloroplast, GO:0022900 - electron transport chain, GO:0019740 - nitrogen utilization, GO:0006810 - transport, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0048307 - ferredoxin-nitrite reductase activity, GO:0042128 - nitrate assimilation	TO:0000557 - secondary branch number, TO:0006032 - panicle size, TO:0000371 - yield trait, TO:0000346 - tiller number, TO:0000480 - nutrient sensitivity, TO:0000547 - primary branch number	
6346	qCL-1	qCL-1															
6347	qCL-7	qCL-7															
6348	qCT-1	qCT-1															
6349	qCT-11	qCT-11															
6350	qCT-7	qCT-7															
6351	qCTS12	qCTS12															
6352	-	qDTH (qDTH-1, qDTH-7)															
6354	qGpp	qGpp	GRAINS PER PANICLE	grains per panicle													
6355	qHd	qHd	HEADING DATE	heading date					 Reproductive organ - Heading date								
6359	qIC	qIc															
6360	qIw	qIw															
6361	qLb-3, qLb-11	qLb-3, qLb-11	LEAF BRONZING.	leaf bronzing.													
6362	qOVA4	qOVA4, qOVA5-2, qOVA6 (?)	OVICIDAL RESPONSE TO THE WBPH BY WATERY LESION 	ovicidal response to the WBPH by watery lesion （液浸化）					 unclassified,  Tolerance and resistance - Insect resistance						GO:0009625 - response to insect		
6363	qPBNm	qPBNm	PANICLE SIZE	panicle size													
6364	qPh	qPh	PLANT HEIGHT	plant height					 Vegetative organ - Culm								
6365	qRCT3	qRCT3	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6366	qRCT6a	qRCT6a	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6367	qRCT6b	qRCT6b	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6368	qRCT7	qRCT7	COLD TOLERANCE	cold tolerance					 Tolerance and resistance - Stress tolerance								
6369	qSB (qSB-3,qSB-12)	qSB (qSB-3,qSB-12)															
6370	qSBN	qSBN															
6371	qSc	qSc															
6372	qSDT12-2	qSDT12-2															
6373	qSDT2-1	qSDT2-1															
6374	QSH1	qSH1, qsh1, qSH-1, RIL1, OsRIL1	Shattering (QTL)-1	QTL of seed shattering in chromosome 1, RI-LIKE1, erticillate rachis-like 1		qSH1-A, qSH1-W, qSH1-T, qSH1-N, ril1, ril1-1	1	Nipponbare allele. EU999788-EU999861 (Oryza sativa and other wild rice species). a homeodomain gene. BEL1-type homeobox gene. AB071330-AB071333. AY886122-AY886152 and DQ374913-DQ374940  (O. sativa and other wild rice species, partial cds). one of the two rice REPLUMLESS orthologs. GO:1902182: shoot apical meristem development. TO:1000009: branch angle. TO:0000930: seed shattering. 	 Reproductive organ - Inflorescence,  Vegetative organ - Culm,  Seed - Physiological traits - Shattering,  Tolerance and resistance - Stress tolerance	Os01g0848400	LOC_Os01g62920.1				GO:0080006 - internode patterning, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051409 - response to nitrosative stress, GO:0003677 - DNA binding, GO:0010492 - maintenance of shoot apical meristem identity, GO:0010073 - meristem maintenance	TO:0000207 - plant height, TO:0000142 - secondary branching of inflorescence, TO:0000145 - internode length, TO:0006014 - phyllotaxy, TO:0000473 - grain shattering, TO:0006020 - shoot apical meristem development, TO:0000547 - primary branch number	
6375	qSH11	qSH11	shattering (QTL)-11				11	Kasalath allele	 Seed - Physiological traits - Shattering								
6376	qSH12	qSH12	shattering (QTL)-12				12	Kasalath alleles	 Seed - Physiological traits - Shattering								
6377	qSH2	qSH2	shattering (QTL)-2 				2	Nipponbare allele	 Seed - Physiological traits - Shattering								
6378	qSH5	qSH5	Shattering (QTL)-5				5	Nipponbare allele. 	 Seed - Physiological traits - Shattering								
6379	qSNP	qSNP															
6380	-	qSpp:															
6381	qSv	qSv															
6382	-	qTIL-4, qTIL-7, qTIL-12, qNEI-12															
6383	RA1	Ra1	RA-LIKE GENE 1	Ra-like gene 1			4	R gene family.	 Coloration - Anthocyanin						GO:0009718 - anthocyanin biosynthetic process		
6384	RA8	OsBURP15, BURP15	ANTHER-SPECIFIC PROTEIN 8	BURP domain-containing protein 15, Anther-specific protein 8	ANTHER-SPECIFIC PROTEIN 8 		9	anther-specific gene. Q69QR8.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0480900	LOC_Os09g30320.1				GO:0009555 - pollen development		
6385	RAB16A	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRAB-21, OsRab16A, OsLEA29, rab16A, OsRAB16A	RESPONSIVE TO ABA GENE 16A	RAB(responsive to ABA) gene 16A, RAB gene 16A, late embryogenesis abundant protein 29, responsive to ABA protein 21	RAB16A PROTEIN		11	Y00842. A2ZDX9. Q2R4Z4. LEA protein. Rab21 (OsRAB21) in Asano et al. 2011, Kim et al. 2014, Hong et al. 2016, Tang et al. 2016, Lou et al. 2017, Chang et al. 2017, Fu et al. 2018, Xiong et al. 2018, Huang et al. 2018, Zhang et al. 2020, Huang et al. 2021, Zhang et al. 2021, Liu et al. 2021, Freeg et al. 2022, Yu et al. 2022, Zan et al. 2023, Shi et al. 2021. OsLEA29 (OsRab16A in FIg. 5) in Liu et al. 2022.	 Other,  Tolerance and resistance - Stress tolerance	 Os11g0454300	LOC_Os11g26790.1				GO:0009415 - response to water, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0006950 - response to stress	TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000237 - water stress trait	
6389	RB2	Rb2	RB-LIKE GENE 2	Rb-like gene 2				R gene family.	 Coloration - Anthocyanin						GO:0005739 - mitochondrion, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0030528 - transcription regulator activity, GO:0009812 - flavonoid metabolic process		
6390	PIKM	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2	PYRICULARIA ORYZAE RESISTANCE KM	Pyricularia oryzae resistance KM, Magnaporthe grisea resistance km, Blast resistance km			11	Pyricularia oryzae resistance. Original line is Minehikari (Japonica). Map position (115.1-117.0 cM). Pi-km is one of the alleles in the Pi-k locus. Pikm-specific resistance is conferred by cooperation of Pikm1-TS and Pikm2-TS (Ashikawa et al. 2008). B5UBC1.Locus 1: Os11g0688832 (LOC_Os11g46200.1), symbol: Pikm1, Pikm1-TS, Pik1-KA, Pik-1, Pikp-1, Pikm5-NP, Pik1-H4, Pi1-5, sequence: AB462324(Pikm1), AB616658 (Pik1-KA), ABA95385 (Pikm5-NP), AB510251-AB510297 (Pikm1-TS variant 1~ variant 47). Locus 2: Os11g0689100 (LOC_Os11g46210.1, AK073759, AK108692), symbol: Pikm2, Pikm2-TS, Pik2-KA, Pik-2, Pikp-2, Pikm6-NP, Pik2-H4, Pi1-6, sequence: AB462325(Pikm2), AB510298-AB510347 (Pikm2-TS variant 1~variant 50). sequence covering both Os11g0688832 and Os11g0689100: AB462256(Pikm1-TS, Pikm2-TS), HM048900 (Pik-2, Pik-1),  HM035360 (Pikp-1, Pikp-2),  AB616659 (Pik2-KA, Pik1-KA), HQ606329 (Pi1-5C, Pi1-6C).	 Tolerance and resistance - Disease resistance	Os11g0688832/Os11g0689100	LOC_Os11g46210.1, LOC_Os11g46200.1				GO:0017111 - nucleoside-triphosphatase activity, GO:0006952 - defense response, GO:0009620 - response to fungus, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0043531 - ADP binding, GO:0005524 - ATP binding		
6391	PIKP	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2	PYRICULARIA ORYZAE RESISTANCE KP	Pyricularia oryzae resistance KP, Magnaporthe grisea resistance kp, Blast resistance kp			11	Pyricularia oryzae resistance. Original line is Pusur (the West Pakistani rice variety). Map position chr.11 (119.9-120.3 cM). Pi-kp is one of the alleles in the Pi-k locus. HM035360  (Pikp-1, Pikp-2). Both Pikp-1 and Pikp-2 are required for Pik-p function (Yuan et al. 2011). PDB:6G10: Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with the HMA domain of Pikp-1 from rice (Oryza sativa) (UniProt: E9KPB5). PDB:5A6P: Heavy metal associated domain of NLR-type immune receptor Pikp1 from rice (Oryza sativa).	 Tolerance and resistance - Disease resistance						GO:0016046 - detection of fungus, GO:0009620 - response to fungus, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding, GO:0004867 - serine-type endopeptidase inhibitor activity	TO:0000074 - blast disease	
6392	PIY2	Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t)	PYRICULARIA GRISEA RESISTANCE Y 2	Pyricularia oryzae resistance y2, Magnaporthe grisea resistance y2, Blast resistancey2			2	Original line is Yanxian No.1 (Indica). Map position (153.2-154.1 cM). Pi-y1(t) in Huang 2005 and Pi-y2(t) in Lei et al. 2005. The results indicated that the two gene Pi-y1(t) and Pi-y2(t) could be one same gene in that their positions is too close, designated tentatively as Pi-y(t) (Lei et al. 2005). 	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6393	PIZT	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9, OsPiz-t	PYRICULARIA ORYZAE RESISTANCE ZT	Pyricularia oryzae resistance zt, Magnaporthe grisea resistance zt, Blast resistance zt			6	Original line is Toride 1 (Japonica). DQ352040(Piz-t). BGIOSGA022714 (indica). The resistance gene in Toride 1 was allelic to Pi-z and designated as Pi-zt (Yokoo & Kiyosawa 1970). Pi2/9 homolog. GO:0031342: negative regulation of cell killing. NLR receptor. Pi9 in  Yu et al. 2018.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os06g0286700	LOC_Os06g17900.1			58.7	GO:0009624 - response to nematode, GO:0002215 - defense response to nematode, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0001906 - cell killing, GO:0043531 - ADP binding, GO:0009620 - response to fungus	TO:0000074 - blast disease, TO:0000384 - nematode damage resistance	
6394	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1	RUBISCO SMALL SUBUNIT	"Small subunits of Rubisco, \"Ribulose bisphosphate carboxylase small chain, chloroplastic\", RuBisCO small subunit, Ribulose bisphosphate carboxylase small chain C, RuBisCO small subunit C, RuBisCO small subunit 2, ribulose-1, 5-bisphosphate carboxylase/oxygenase small subunit, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 2, small subunit of ribulose-1, 5-bisphosphate carboxylase"	RUBISCO SMALL SUBUNIT		12	EC=4.1.1.39 A2Y205(indica). Q0INY7(japonica). D00643. X07515. L22155. OsrbcS1 in Park et al. 2015. RbcS2 in Fan et al. 2023.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0274700	LOC_Os12g17600.2, LOC_Os12g17600.1				GO:0019253 - reductive pentose-phosphate cycle, GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0055114 - oxidation reduction, GO:0004497 - monooxygenase activity, GO:0009853 - photorespiration	TO:0000457 - total biomass yield, TO:0001015 - photosynthetic rate, TO:0000396 - grain yield, TO:0000011 - nitrogen sensitivity	
6401	RMS	RFcw, RFCW, Rfcw、Rf17	RETROGRADE-REGULATED MALE STERILITY	fertility restorer gene, restoration of fertility 17			4	Os04g0475900, AB481199,Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in CW-type cytoplasmic male sterile rice plants	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0475900	LOC_Os04g40020.1				GO:0007275 - multicellular organismal development		
6404	RGP2	rgp2, OsRab11B1	RAS -RELATED GPT-BINDING PROTEIN2	ras -related GPT-binding protein2, Ras-related protein RGP2, GTP-binding regulatory protein RGP2, small GTP-binding protein OsRab11B1, GTP-binding protein OsRab11	RAS -RELATED GPT-BINDING PROTEIN2		5	Q40723. D15842 (replaced by C98278). OsRab11 in Sasaki et al. 1994.	 Biochemical character	Os05g0280200	LOC_Os05g20050.1, LOC_Os05g20050.2, LOC_Os05g20050.3				GO:0003677 - DNA binding, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005768 - endosome, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0009504 - cell plate		
6406	RIR1A	Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28, OsRIR1A, OsRIR1B	RICE INDUCED RESISTANCE GENE 1A	Rice pathogen-related protein, Rapid alkalization factor 28, pathogen-related protein Rir1a, rice induced resistance gene 1a	RICE INDUCED RESISTANCE PROTEIN 1A		10	Y14824 (Indica RIR1b), Y14825 (japonica RIR1a).	 Tolerance and resistance - Disease resistance	Os10g0569400	LOC_Os10g41980.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000315 - bacterial disease resistance, TO:0000074 - blast disease	PO:0025034 - leaf 
6407	RIRES	RIRES	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
6408	RPL27-2	rpl27-2, rpl27, mtRPL27a, S27, S27(t), S27(t)*	MITOCHONDRIAL RIBOSOMAL PROTEIN L27	"mitochondrial ribosomal protein L27, F1 pollen sterility
gene S27, HYBRID STERILITY 27"	MITOCHONDRIAL RIBOSOMAL PROTEIN L27		8	AB496673. AB576647 (Oryza nivara). A loss-of-function allele of F1 pollen sterility gene S27 in Oryza nivara, S27-nivs is composed of two tandem mitochondrial ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive. S27-glums (O. glumaepatula allele). Os08g0404250 (in Ncbi and UniProt). 	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os08g0404200	LOC_Os08g31219.1				GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0009555 - pollen development, GO:0006412 - translation, GO:0005840 - ribosome	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0009046 - flower , PO:0001007 - pollen development stage , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009066 - anther , PO:0009005 - root 
6409	RPOC1	rpoC1, RPO beta', RPObeta', OsRPOC1	RNA POLYMERASE C1	RNA polymeraseC1, RNA polymerase C1, DNA-directed RNA polymerase beta' chain, DNA-directed RNA polymerase subunit beta', Plastid-encoded RNA polymerase subunit beta', RNA polymerase subunit beta', RNA polymerase beta' chain, RNA polymerase beta' subunit-1, RNA polymerase beta' subunit, RNA polymerase beta' chain, RNA polymerase beta I subunit	RNA POLYMERASE C1		Pt	PEP. EC=2.7.7.6 P0C504. P0C505(indica). P0C506(japonica). AY522329 (isolate 93-11 chloroplast complete genome), AY522330: AAS46112: Nip037 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33987 (Japonica Group chloroplast genome). GU592207:ADD62825 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00250	GR:0100363			GO:0003899 - DNA-directed RNA polymerase activity, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0009536 - plastid, GO:0006351 - transcription, DNA-dependent, GO:0009507 - chloroplast		
6410	RPOC2	"rpoC2, RPO beta\", RPObeta\""	RNA POLYMERASE C2	RNA polymeraseC2, RNA polymerase C2, DNA-directed RNA polymerase beta'' chain, Plastid-encoded RNA polymerase subunit beta'', RNA polymerase subunit beta'', RNA polymerase beta'' chain, RNA polymerase beta' subunit-2, RNA polymerase beta'' subunit, Plastid- encoded RNA polymerase beta'' subunit, RNA polymerase beta'' chain, RNA polymerase beta II subunit	RNA POLYMERASE C2		Pt	LOC_Osp1g00260.PEP. EC=2.7.7.6 P0C507. P0C508(indica). P0C509(japonica). X15901: CAA33988 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00260	GR:0100364			GO:0009536 - plastid, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0009507 - chloroplast, GO:0003899 - DNA-directed RNA polymerase activity		
6411	RPS10	rps10	RIBOSOMAL PROTEIN S10	ribosomal protein S10	RIBOSOMAL PROTEIN S10				 Biochemical character						GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
6412	RPS4	rps4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME	S4 subunit of the mitochondrial ribosome, Ribosomal protein S4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME		Mt	AF055706. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99369 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19883 (Nipponbare complete mitochondrial genome). JN861111: AEZ03703, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03703 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19883 (DQ167400: AAZ99369) and JN861111: AEZ03703 (JF281153: AEZ03703) are in conflict.	 Biochemical character		LOC_Osm1g00400	GR:0100156			GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0005763 - mitochondrial small ribosomal subunit, GO:0006412 - translation		
6413	RTS	RTS, RTS2	RICE TAPETUM SPECIFIC GENE	rice tapetum specific gene, rice tapetum-specific			1	U12171. GRO:0007149; 5.1-early booting stage ; GRO:0007018; 4.01-pollen development.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0929600	LOC_Os01g70440.1	GR:0080006			GO:0048656 - tapetal layer formation, GO:0048658 - tapetal layer development, GO:0008565 - protein transporter activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0032940 - secretion by cell	TO:0000111 - genetically engineered male sterility, TO:0000053 - pollen sterility, TO:0000245 - pollen free	PO:0009071 - anther wall tapetum 
6414	RUBI3	rubi3, UBQ3	RICE POLYUBIQUITIN	rice polyubiquitin, poly-ubiquitin	RICE POLYUBIQUITIN		4	LOC_Os04g53620. AY954394. D12776. Q58G87. D10432(partial cds).	 Biochemical character	Os04g0628100	LOC_Os04g53620.1, LOC_Os04g53620.2, LOC_Os04g53620.4				GO:0005634 - nucleus, GO:0005737 - cytoplasm		
6415	RUBQ2	rubq2	RICE UBIQUITIN2	rice ubiquitin2, polyubiquitin	RICE UBIQUITIN2			AF184280.	 Biochemical character						GO:0005634 - nucleus, GO:0005737 - cytoplasm		
6416	RUBQ2	rubq2, rub1, Ubq1, Rubq1, UBQ10	RICE UBIQUITIN2	rice ubiquitin2, ubiquitin 2, ubiquitin2, Ubiquitin 10	RICE UBIQUITIN2		2	AF484682. AY661468. X76064. U37687. UBQ10 in Jain et al. 2006 and Auler et al. 2017.	 Biochemical character	Os02g0161900	LOC_Os02g06640.1, LOC_Os02g06640.3, LOC_Os02g06640.4				GO:0005737 - cytoplasm, GO:0005634 - nucleus		
6417	RWCA	RWCA	RELATIVE WATER CONTENT	relative water content					 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6418	RWCW	RWCW	RELATIVE WATER CONTENT	relative water content					 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6419	RYMV1	Rymv1, eIF(iso)4G, OsRYMV1, OseIF(iso)4G, eIFiso4G	RESISTANCE TO YELLOW MOTTLE VIRUS-1	Rice yellow mottle virus resistant 1, Resistance to yellow mottle virus-1, eukaryotic translation initiation factor 4G, large subunit eIFiso4G	EUKARYOTIC TRANSLATION INITIATION FACTOR 4G	Rymv1-1-Og1, Rymv1-1-Og2, rymv1-3, rymv1-4, rymv1-5	4	AM156957, AM156958, AM156959, AM156960, AM156961. PO:0000007; cultured leaf cell ; PO:0009025; leaf. GRO:0007139; A-vegetative stage. KC611153-KC611163 (O. sativa and wild rice species, partial cds). Oryza glaberrima ORGLA04G0147000.1 corresponds to this gene.	 Tolerance and resistance - Disease resistance	Os04g0499300	LOC_Os04g42140.1	GR:0061359			GO:0006417 - regulation of translation, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003743 - translation initiation factor activity, GO:0051607 - defense response to virus, GO:0046739 - spread of virus in host, GO:0016281 - eukaryotic translation initiation factor 4F complex, GO:0016070 - RNA metabolic process, GO:0009615 - response to virus	TO:0000088 - rice yellow mottle virus resistance, TO:0000164 - stress trait	PO:0000007 - leaf-derived cultured plant cell , PO:0009025 - vascular leaf 
6420	S29	S29(t)	HYBRID STERILITY 29				2	Oryza glaberrima pollen killer gene. S29(t) was mapped to the interval between markers RM423 (1.3 cM) and RM7033 (1.1 cM) on chromosome 2 (Hu et al. 2004). A new pollen killer locus, S29(t) in O. glaberrima, was identified and mapped to interval between SSR marker RM7033 (1.1 cM) and RM7562 (1.3 cM) on rice chromosome 2. S29(t) closely corresponded to S22 which is also a pollen killer gene in O. glumaepatula (Hu et al. 2006). pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion						GO:0007275 - multicellular organismal development	TO:0000036 - hybrid incompatibility, TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility	
6422	S32N	S32n(t)(=qSS5)	HYBRID STERILITY 32	hybrid sterility					 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
6423	S33	S33(t)	GAMETE ELIMINATOR33(T)	gamete eliminator33(t)				gamete eliminator.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000036 - hybrid incompatibility, TO:0000416 - embryosac abortion, TO:0000218 - pollen abortion type	
6425	S5	S5	WIDE COMPATIBILITY GENES	wide compatibility genes					 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009856 - pollination, GO:0009566 - fertilization		
6428	S5-N	S5-n	WIDE COMPATIBILITY GENES	wide compatibility genes			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009856 - pollination, GO:0009566 - fertilization		
6429	S5-N	S5-n	WIDE COMPATIBILITY GENES	wide compatibility genes			6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009856 - pollination, GO:0009566 - fertilization		
6431	SODCC1	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1, OsCu/ZnSOD1, OsCSD4, CDS4, CuZnSOD4, OsCuZnSOD1, OsCSD1, CSD1, OsSOD2	CYTOSOLIC SUPEROXIDASE DISMUTASE	"cytosolic superoxidase dismutase, Superoxide dismutase [Cu-Zn] 1, Cytosolic Cu/Zn-siperoxide dismutase, rice Cu/Zn-SOD, Cu/Zn-SOD, Cytosolic Copper/Zinc-Superoxide Dismutase 1, \"Superoxide dismutase (Cu-Zn) 4, cytosolic\", Cu-dependent SOD 1.2, cytosolic CuZn SOD 1"	CYTOSOLIC SUPEROXIDASE DISMUTASE		3	EC=1.15.1.1 L36320. L19435. D00999. D15875. MW091043. A2XGP6(indica). Q0DRV6(japonica).Superoxide dismutase (Cu-Zn) 4, cytosolic in Sasaki et al. 1994. SodCc2 in Zhang et al. 2014, Huang et al. 2018. OsSODA1 in Wang et al. 2014. OsCSD1 in Sanyal et al. 2022. ROS-scavenging enzyme. GO:0072593: reactive oxygen species metabolic process. OsCu/Zn-SOD2 in Lou et al. 2017. Cu/ZnSOD1 in Huang et al. 2018. OsCSD4 in Navarro et al. 2021. OsSOD2 in Lou et al. 2023. GO:0120126: response to copper ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0351500	LOC_Os03g22810.1	GR:0080033			GO:0005737 - cytoplasm, GO:0019430 - removal of superoxide radicals, GO:0046688 - response to copper ion, GO:0010039 - response to iron ion, GO:0042742 - defense response to bacterium, GO:0006801 - superoxide metabolic process, GO:0010193 - response to ozone, GO:0005829 - cytosol, GO:0006979 - response to oxidative stress, GO:0009416 - response to light stimulus, GO:0016209 - antioxidant activity, GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0055114 - oxidation reduction, GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0004784 - superoxide dismutase activity, GO:0000303 - response to superoxide, GO:0008270 - zinc ion binding	TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000075 - light sensitivity, TO:0000605 - hydrogen peroxide content	PO:0004506 - developing seed stage , PO:0005052 - plant callus , PO:0009066 - anther , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009010 - seed 
6439	qSH8	sh8	shattering(QTL)-8	shattering8			8		 Seed - Physiological traits - Shattering								
6440	SIP2A	Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1, OsIDI1	SUBMERGENCE-INDUCED PROTEIN 2A	submergence-induced protein 2A, 1, 2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2, Aci-reductone dioxygenase 2, Submergence-induced protein 2A, acireductone dioxygenase 2, submergence-induced protein2A, aci-reductone-dioxygenase-like protein, Fe-deficiency-induced protein 1	SUBMERGENCE-INDUCED PROTEIN 2A		3	EC=1.13.-.- A2XCT8(indica), Q10RE5(japonica). AF068332, D40831, D47064. AY955841.	 Tolerance and resistance - Stress tolerance	Os03g0161800	LOC_Os03g06620.1				GO:0005737 - cytoplasm, GO:0034224 - cellular response to zinc ion starvation, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0046872 - metal ion binding, GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity, GO:0005634 - nucleus, GO:0005506 - iron ion binding, GO:0055114 - oxidation reduction, GO:0010106 - cellular response to iron ion starvation, GO:0019509 - methionine salvage	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	
6442	ONAC2	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1, OsNAC9, OsNAC1	ORIZA NAC PROTEIN 2	SNAC1: stress-responsive NAC1, stress-responsive NAC 1, stress-induced transcription factor NAC1, NAC domain protein 9, NAC domain-containing protein 2, NAC domain-containing protein 33, NAC domain-containing protein 43, NAC domain-containing protein 44	ORIZA NAC PROTEIN 2		3	DQ394702. AY596808. KC610915-KC610927 (O. sativa and wild rice species, partial ads). OsNAC19 in Lin et al. 2007. SNAC1 and OsNAC19 in Nuruzzaman et al. 2013. NAC19 in Zhu et al. 2014, Phule et al. 2018, Gao et al. 2023. OsNAC9 in Wang et al. 2020. OsSNAC1 in Zhao et al. 2021, Teng et al. 2022. OsNAC9 in Tian et al. 2022. OsNAC1 in Jadoon  et al. 2022. TO:0006053: zinc concentration.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0815100	LOC_Os03g60080.1				GO:0034059 - response to anoxia, GO:0009408 - response to heat, GO:0009735 - response to cytokinin stimulus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0006355 - regulation of transcription, DNA-dependent, GO:0030912 - response to deep water, GO:0042538 - hyperosmotic salinity response, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000524 - submergence tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress	
6443	SNB	AP2/EREBP#073, AP2/EREBP73, AP2-3, OsAP2-3, SSH1, OsSSH1, OsSNB, DLN181, DLN181a, DLN181b, OsDLN181, OsDLN181a, OsDLN181b, SUI4, OsSUI4, SUI4/SNB	SUPERNUMERARY BRACT GENE	Supernumerary Bract gene, Supernumerary Bract, SUPERNUMERARY BRACT, supernumerary bract, transcription factor; SNB, APETALA2/ethylene-responsive element binding protein 73, APETALA2-3, suppression of shattering1, DLN repressor 181, DLN motif protein 181, shortened uppermost internode 4	TRANSCRIPTION FACTOR SNB	snb, ssh1, sui4	7	DQ374663. GRO:0007189; panicle stage PA1. TO:0000930: seed shattering. TO:0020109: vascular bundle development trait. a rice ortholog of SID1 (SISTER OF INDETERMINATE SPIKELET1) in maize. TO:0000975: grain width. The sequencing data of sui4 mutant: SRR7942370 and SRR7942369. TO:1000023: lemma morphology trait.	 Reproductive organ - panicle,  Seed - Physiological traits - Shattering,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Vegetative organ - Culm,  Seed - Morphological traits,  Seed - Morphological traits - Grain shape	Os07g0235800	LOC_Os07g13170.2, LOC_Os07g13170.1	GR:0080036			GO:0003700 - transcription factor activity, GO:0009908 - flower development, GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0048506 - regulation of timing of meristematic phase transition, GO:0009832 - plant-type cell wall biogenesis, GO:0010022 - meristem determinacy, GO:0001558 - regulation of cell growth, GO:0009736 - cytokinin mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0080006 - internode patterning, GO:0010092 - specification of organ identity, GO:0010077 - maintenance of inflorescence meristem identity	TO:0000391 - seed size, TO:0000382 - 1000-seed weight, TO:0000436 - spikelet sterility, TO:0000209 - palea number, TO:0000650 - lemma length, TO:0000145 - internode length, TO:0006030 - spikelet meristem identity, TO:0000622 - flower development trait, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000671 - pre-flowering flower abortion, TO:0000225 - stamen number, TO:0000208 - lemma number, TO:0000397 - grain size, TO:0006032 - panicle size, TO:0000396 - grain yield, TO:0000499 - flower anatomy and morphology trait	PO:0009034 - flower bract , PO:0009029 - stamen , PO:0009030 - carpel , PO:0007615 - flower development stage , PO:0006327 - spikelet meristem , PO:0009039 - glume , PO:0009036 - lodicule 
6444	SP2(T)	sp2(t), sp2	SHORT PANICLE2	short panicle2, short panicle 2, short panicle-2				PO:0009049; inflorescence.	 Reproductive organ - Inflorescence			GR:0061489			GO:0007275 - multicellular organismal development	TO:0000089 - panicle type, TO:0000040 - panicle length	PO:0009049 - inflorescence 
6445	SPA15	SPA15	SENESCENCE ASSOCIATED GENE	senescence associated gene					 Vegetative organ - Leaf						GO:0010150 - leaf senescence		
6450	SPS1	sps1, OsSPS1, SPS	SUCROSE PHOSPHATE SYNTHASE	sucrose phosphate synthase, Probable sucrose-phosphate synthase, UDP-glucose-fructose-phosphate glucosyltransferase, sucrose phosphate synthase 1	SUCROSE PHOSPHATE SYNTHASE		1	EC=2.4.1.14 A2WYE9(indica). Q0JGK4(japonica). BI810562, AU094286, C73370. D45890. U33175. AK121341.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0919400	LOC_Os01g69030.4, LOC_Os01g69030.3, LOC_Os01g69030.2, LOC_Os01g69030.1	GR:0061425			GO:0009414 - response to water deprivation, GO:0009725 - response to hormone stimulus, GO:0005985 - sucrose metabolic process, GO:0009058 - biosynthetic process, GO:0005986 - sucrose biosynthetic process, GO:0046524 - sucrose-phosphate synthase activity, GO:0009413 - response to flooding	TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance, TO:0000286 - submergence sensitivity, TO:0000328 - sucrose content	
6451	SRT5	srt5	SHORT ROOT 5	short root5					 Vegetative organ - Root						GO:0007275 - multicellular organismal development		
6452	SRT6	srt6	SHORT ROOT 6	short root6					 Vegetative organ - Root						GO:0007275 - multicellular organismal development		
6453	SS1	ss-1(t)	SEMI STERILITY	semi-sterility					 Reproductive organ - Pollination, fertilization, fertility - Other sterilities						GO:0007275 - multicellular organismal development		
6459	SUPS6	Su-PS-6(t)	SUPPRESSOR FOR PHOTOPERIOD-SENSITIVE GENE	Supressor of photoperiod-sensitive gene					 Reproductive organ - Heading date						GO:0009648 - photoperiodism		
6462	TDR1	tdr1	TILLERING DWARF RICE 1	tillering dwarf rice-1					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6463	TDR2	tdr2	TILLERING DWARF RICE 2	tillering dwarf rice 2					 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6464	TGW6	tgw6, OsSTRL7, STRL7, OsSSL4, SSL4	TOTAL GRAIN WEIGHT6	total grain weight6, THOUSAND-GRAIN WEIGHT 6, STR-like 7, Strictosidine Synthase-like 4	INDOLE-3-ACETIC ACID (IAA)-GLUCOSE HYDROLASE	TGW6(Kasalath), tgw6(Nipponbare), TGW6-Kasalath	6	TGW6 encodes a novel protein with indole-3-acetic acid (IAA)-glucose hydrolase activity. AB513135. The Kasalath allele contained six nucleotide substitutions and a 1-bp deletion at nucleotide 313 compared to the Nipponbare allele. Nipponbare TGW6 protein hydrolyzed IAA-glucose into IAA and glucose, but Kasalath TGW6 did not. (Ishimaru et al.)	 Biochemical character,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os06g0623700	LOC_Os06g41850.1				GO:0009683 - indoleacetic acid metabolic process, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016844 - strictosidine synthase activity, GO:0016020 - membrane, GO:0016788 - hydrolase activity, acting on ester bonds	TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000590 - grain weight	PO:0009049 - inflorescence 
6465	TMS6	tms6	THERMOSENSITIVE MALE STERILITY 6	thermosensitive male sterility6			5		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development		
6466	TNR1	Tnr1	TRANSPOSABLE DNA ELEMENT	transposable DNA element, Transposal element-1, transposon Tnr1				D21329, D21330, D21331, D21332, D21333, D21335, D21336. 	 Other			GR:0060959			GO:0032196 - transposition		
6471	TR1	tr1	TINY RICE 1	tiny rice			8	A tiny rice dwarf mutant (tr1) shows abnormal morphology such as narrow and short leaf blade, and dark green phenotypes. The recessive mutant gene, tr1, is located between E4443 and RM264 at the end of long arm of chromosome 8.	 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
6472	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, Trx23, RPP13-1	THIOREDOXIN H-TYPE	Thioredoxin H-type, Phloem sap 13 kDa protein 1, phloem protein13-1, h-type thioredoxin 1, thioredoxin h1	CYTOSOLIC THIOREDOXIN		7	cylosolic thioredoxin. D21836, D26547. D16043. A2YIW7(indica), Q0D840(japonica). OsTrx23 in Esfahani and Shahpiri 2014, Shahriari-Farfani  et al. 2018, Zhang et al. 2021, Nuruzzaman et al. 2008, Hong et al. 2022.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0186000	LOC_Os07g08840.1, LOC_Os07g08840.2, LOC_Os07g08840.3				GO:0006952 - defense response, GO:0022900 - electron transport chain, GO:0005737 - cytoplasm, GO:0006662 - glycerol ether metabolic process, GO:0006810 - transport, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0050832 - defense response to fungus, GO:0051775 - response to redox state, GO:0045454 - cell redox homeostasis	TO:0000112 - disease resistance, TO:0000074 - blast disease	
6473	TS		TEMPERATURE SENSITIVE GENE	temperature sensitive gene		ts	1	TS was located between S13528 and S10581 on the long arm of chromosome 1.	 Coloration - Chlorophyll						GO:0009658 - chloroplast organization, GO:0010027 - thylakoid membrane organization, GO:0009266 - response to temperature stimulus		
6474	UDT1	Udt1, bHLH164, OsUDT1, OsbHLH164	UNDEVELOPED TAPETUM 1	Undeveloped tapetum-1, undeveloped Tapetum1, undeveloped Tapetum 1, undeveloped tapetum 1, UDT1 protein, basic helix-loop-helix protein 164	UDT1 PROTEIN	udt1-1, udt1-2, udt1	7	AY953870, AAX55226. basic helix loop helix protein; major regulator of early tapetum development. GRO:0007212; stamen stage ST5 ; GRO:0007149; 5.1-early booting stage ; GRO:0007047; 02-seedling ; GRO:0007216; 1.1-dry seed.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0549600	LOC_Os07g36460.1	GR:0080007			GO:0005634 - nucleus, GO:0048658 - tapetal layer development, GO:0048656 - tapetal layer formation, GO:0045449 - regulation of transcription, GO:0030528 - transcription regulator activity, GO:0048443 - stamen development, GO:0009555 - pollen development, GO:0048653 - anther development	TO:0000245 - pollen free, TO:0000215 - stamen anatomy and morphology trait	PO:0009051 - spikelet , PO:0004700 - anther wall middle layer , PO:0009071 - anther wall tapetum , PO:0000032 - tetrad of microspores 
6475	W7LD	W7LD							 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6476	W7LR	W7LR							 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6477	W8RWC	W8RWC	W8RWC						 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation		
6478	WAF1	OsWAF1, waf1, waf1-1, waf1-2, HEN1, OsHEN1	WAVY LEAF 1	wavy leaf 1-1, wavy leaf 1-2, WAVY LEAF1, HUA ENHANCER 1		waf1, waf1-1, waf1-2	7	The locus was roughly mapped to the short arm of chromosome 7 between two markers S11633-2 and E12196. AB583903. an Ortholog of Arabidopsis HEN1. a predicted lethal-phenotype gene in Lloyd et al. 2015. GO:1902895: positive regulation of miRNA transcription.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0164000	LOC_Os07g06970.1				GO:0008171 - O-methyltransferase activity, GO:0007275 - multicellular organismal development, GO:0008173 - RNA methyltransferase activity, GO:0010076 - maintenance of floral meristem identity, GO:0009908 - flower development, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	PO:0007615 - flower development stage 
6489	XTH1	OsXTH1	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 1	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 1, xyloglucan endo-transglycosylase-like protein 1	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 1		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0529700	LOC_Os07g34580.2, LOC_Os07g34580.1				GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006073 - cellular glucan metabolic process, GO:0042545 - cell wall modification, GO:0005618 - cell wall, GO:0010238 - response to proline, GO:0005975 - carbohydrate metabolic process	TO:0000034 - chromium sensitivity	
6490	XTH10	OsXTH10	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 10	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 10	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 10		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0697000	LOC_Os06g48200.1				GO:0080022 - primary root development, GO:0005886 - plasma membrane, GO:0009739 - response to gibberellin stimulus, GO:0009408 - response to heat, GO:0007568 - aging, GO:0009612 - response to mechanical stimulus, GO:0009505 - plant-type cell wall, GO:0009733 - response to auxin stimulus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0010411 - xyloglucan metabolic process, GO:0010238 - response to proline, GO:0009741 - response to brassinosteroid stimulus, GO:0009409 - response to cold, GO:0042545 - cell wall modification, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0080039 - xyloglucan endotransglucosylase activity, GO:0016762 - xyloglucan:xyloglucosyl transferase activity	TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance	
6491	XTH11	OsXTH11, XTR2, OsXTR2, Meri-5	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 11	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 11, XET-related gene 2, xyloglucan endotransglucosylase/hydrolase 11	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 11		6	D16085.	 Biochemical character	Os06g0696400	LOC_Os06g48160.1				GO:0048046 - apoplast, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0010411 - xyloglucan metabolic process, GO:0009505 - plant-type cell wall, GO:0009409 - response to cold, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0007568 - aging, GO:0009733 - response to auxin stimulus, GO:0042545 - cell wall modification, GO:0080022 - primary root development, GO:0080039 - xyloglucan endotransglucosylase activity, GO:0009612 - response to mechanical stimulus, GO:0009408 - response to heat, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall		
6492	XTH12	OsXTH12	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 12	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 12	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 12		6		 Biochemical character	Os06g0696600	LOC_Os06g48180.1, LOC_Os06g48180.2				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast		
6493	XTH13	OsXTH13	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 13	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 13	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 13		2		 Biochemical character	Os02g0280200	LOC_Os02g17880.1				GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall		
6494	XTH14	OsXTH14	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 14	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 14	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 14		2		 Biochemical character	Os02g0280300	LOC_Os02g17900.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process		
6495	XTH15	OsXTH15, DEFL9, OsDEFL9	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 15	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 15, defensin-like 9	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 15		6	LOC_Os06g22919 (Os06g0335900/Os06g0335975). GO:0071555: cell wall organization. 	 Biochemical character	Os06g0335900	LOC_Os06g22919.1, LOC_Os06g22919.2, LOC_Os06g22919.3, LOC_Os06g22919.4				GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0010411 - xyloglucan metabolic process, GO:0042546 - cell wall biogenesis, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast		
6496	XTH16	OsXTH16	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 16	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 16	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 16		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0604900	LOC_Os04g51520.1				GO:0042545 - cell wall modification, GO:0009266 - response to temperature stimulus, GO:0010238 - response to proline, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process	TO:0000034 - chromium sensitivity, TO:0000432 - temperature response trait	
6497	XTH17	OsXTH17, OsXTH8, XTH8	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 17	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 17	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17		8	Q76BW5. AB110604. OsXTH8 in Song et al. 2023.	 Biochemical character	Os08g0237000	LOC_Os08g13920.1				GO:0006073 - cellular glucan metabolic process, GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0009739 - response to gibberellin stimulus, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000166 - gibberellic acid sensitivity	
6498	XTH18	OsXTH18	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 18	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 18	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18		6	LOC_Os06g48170.	 Biochemical character	Os06g0696500	LOC_Os06g48170.1				GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0005975 - carbohydrate metabolic process, GO:0006073 - cellular glucan metabolic process		
6499	XTH19	OsXTH19	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 19	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 19, xyloglucan endotransglucosylase/hydrolase 19	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0108300	LOC_Os03g01800.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0009266 - response to temperature stimulus, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0040007 - growth, GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process	TO:0000145 - internode length, TO:0000135 - leaf length, TO:0000346 - tiller number, TO:0006001 - salt tolerance, TO:0000432 - temperature response trait	
6500	XTH2	OsXTH2, XTR1, OsXTR1	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 2	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 2, XET-related gene 1	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2		11	D41305. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0539200	LOC_Os11g33270.1				GO:0006073 - cellular glucan metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009612 - response to mechanical stimulus, GO:0009645 - response to low light intensity stimulus, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0009505 - plant-type cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0009507 - chloroplast, GO:0009826 - unidimensional cell growth, GO:0048046 - apoplast, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	
6501	XTH20	OsXTH20, XET32	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 20	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 20, xyloglucan endotransglucosylase/hydrolase 20, xyloglucan endotransglucosylase/hydrolase protein 32	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20		10	XET32 in Aya et al. 2014.	 Biochemical character	Os10g0545500	LOC_Os10g39840.1				GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009832 - plant-type cell wall biogenesis, GO:0031122 - cytoplasmic microtubule organization		
6502	XTH21	OsXTH21	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 21	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 21	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21		7	LOC_Os07g29750.	 Biochemical character	Os07g0480800	LOC_Os07g29750.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall		
6503	XTH22	OsXTH22	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 22	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 22	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 22		2	LOC_Os02g57770.	 Biochemical character	Os02g0823700	LOC_Os02g57770.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0048046 - apoplast		
6504	XTH23	OsXTH23, XTR3, OsXTR3	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 23	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 23, XET-related gene 3	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 23		2	XTR3 (TXR3) in Hwang & Back 2021.	 Biochemical character	Os02g0696500	LOC_Os02g46910.1, LOC_Os02g46910.2				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process		
6505	XTH24	OsXTH24	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 24	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 24	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24		3		 Biochemical character	Os03g0854600	LOC_Os03g63760.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
6506	XTH25	OsXTH25	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 25	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 25	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 25		10		 Biochemical character	Os10g0577500	LOC_Os10g42670.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		
6507	XTH26	OsXTH26	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 26	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 26	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 26		2		 Biochemical character	Os02g0127800	LOC_Os02g03550.1				GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0006073 - cellular glucan metabolic process, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
6508	XTH27	OsXTH27, XTH	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 27	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 27	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27		10	LOC_Os10g02770.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os10g0117000	LOC_Os10g02770.1				GO:0048046 - apoplast, GO:0010154 - fruit development, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0080086 - stamen filament development, GO:0010087 - phloem or xylem histogenesis, GO:0006073 - cellular glucan metabolic process, GO:0009908 - flower development, GO:0005975 - carbohydrate metabolic process, GO:0005618 - cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		PO:0007615 - flower development stage 
6509	XTH28	OsXTH28	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 28	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 28	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 28		3		 Biochemical character	Os03g0239000	LOC_Os03g13570.1				GO:0080086 - stamen filament development, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0010087 - phloem or xylem histogenesis, GO:0005618 - cell wall, GO:0010154 - fruit development, GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0048046 - apoplast		
6510	XTH29	OsXTH29	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 29	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 29	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 29		9		 Biochemical character								
6511	XTH3	OsXTH3, XTR4, OsXTR4	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 3	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 3, XET-related gene 4	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3		4		 Biochemical character	Os04g0631200	LOC_Os04g53950.1, LOC_Os04g53950.2, LOC_Os04g53950.3				GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		
6512	XTH4	OsXTH4	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 4	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 4	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4		8		 Biochemical character	Os08g0240500	LOC_Os08g14200.1				GO:0048046 - apoplast, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		
6513	XTH5	OsXTH5	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 5	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 5	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5		8		 Biochemical character						GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0048046 - apoplast, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005618 - cell wall, GO:0006073 - cellular glucan metabolic process		
6514	XTH6	OsXTH6	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 6	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 6	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 6		4		 Biochemical character	Os04g0604200	LOC_Os04g51450.1				GO:0048046 - apoplast, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		
6515	XTH7	OsXTH7	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 7	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 7	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7		4		 Biochemical character	Os04g0604800	LOC_Os04g51510.1				GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006073 - cellular glucan metabolic process		
6516	XTH8	OsXTH8, OsSTA207	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 8	Xyloglucan endotransglycosylase/hydrolase, xyloglucan endotransglucosylase 8	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 8		8	a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0237800	LOC_Os08g13980.1				GO:0048046 - apoplast, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006073 - cellular glucan metabolic process, GO:0005618 - cell wall, GO:0016762 - xyloglucan:xyloglucosyl transferase activity		PO:0009066 - anther 
6517	XTH9	OsXTH9, OsXET9, XTH1, OsXTH1	XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 9	xyloglucan endotransglucosylase/hydrolase, xyloglucan endotransglucosylase 9, xyloglucan endotransglycosylase 1, XYLOGLUCAN ENDOTRANSGLUCOSYLASE-HYDROLASE 9	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9		4	AF443603. OsXTH1 in Duan et al. 2006, Gan et al. 2015, Jang and  Li 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0604300	LOC_Os04g51460.1				GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009826 - unidimensional cell growth, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0010238 - response to proline, GO:0016762 - xyloglucan:xyloglucosyl transferase activity, GO:0042545 - cell wall modification, GO:0006073 - cellular glucan metabolic process	TO:0002677 - brassinosteroid sensitivity, TO:0000034 - chromium sensitivity, TO:0000172 - jasmonic acid sensitivity	
6518	YK1	YK1	HC TOXIN REDUCTASE-LIKE GENE	HC toxin reductase-like gene	HC TOXIN REDUCTASE HOMOLOGUE				 Biochemical character						GO:0016491 - oxidoreductase activity		
6519	YK1	YK1	HC TOXIN REDUCTASE-LIKE GENE	HC toxin reductase-like gene	HC TOXIN REDUCTASE HOMOLOGUE				 Biochemical character						GO:0016491 - oxidoreductase activity		
6520	WRKY1	OsWRKY1, OsWRKY1v2	WRKY GENE1	Rice WRKY gene1	TRANSCRIPTION FACTOR WRKY1		1	BK005004. WRKY96 in Zhang and Wang (2005). and in Berri et al. (2009). WRKY4 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance	Os01g0246700	LOC_Os01g14440.1				GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009629 - response to gravity, GO:0009413 - response to flooding, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009845 - seed germination	TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002693 - gravity response trait	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
6521	WRKY10	OsWRKY10	WRKY GENE 10	Rice WRKY gene10	TRANSCRIPTION FACTOR WRKY10	oswrky10, wrky10, wrky10-1, wrky10-6, wrky10-28	1	BK005013. AY341854. WRKY27 in Zhang and Wang (2005) and in Berri et al. (2009), WRKY3 in Wu et al. (2005) and Sun et al. 2014. HQ858826. TO:0020102: phosphate content. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0186000	LOC_Os01g09100.1				GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0006794 - phosphorus utilization, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0010150 - leaf senescence, GO:0007568 - aging, GO:0006952 - defense response, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0001024 - phosphorus content, TO:0000102 - phosphorus sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000511 - phosphorus uptake, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	PO:0001054 - 4 leaf senescence stage 
6522	WRKY11	OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2	WRKY GENE11	Rice WRKY gene11, semidwarf and late flowering 1	TRANSCRIPTION FACTOR WRKY11	dlf1	1	LOC_Os01g43650. BK005014. AY341856. WRKY24 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY10 in Wu et al. (2005) and Sun et al. 2014. HQ858857. 	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os01g0626400	LOC_Os01g43650.1, LOC_Os01g43650.2				GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0009609 - response to symbiotic bacterium, GO:2000028 - regulation of photoperiodism, flowering, GO:0009409 - response to cold, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus	TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002616 - flowering time, TO:0000166 - gibberellic acid sensitivity, TO:0000188 - drought sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
6523	WRKY12	OsWRKY12	WRKY GENE 12	Rice WRKY gene12	TRANSCRIPTION FACTOR WRKY12		1	LOC_Os01g43550. BK005015. AY676924. WRKY23 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY9 in Wu et al. (2005).  OsWRKY03 in Liu et al. 2005.	 Tolerance and resistance - Disease resistance	Os01g0624700	LOC_Os01g43550.1, LOC_Os01g43550.2				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity	
6524	WRKY13	OsWRKY13	WRKY GENE 13	Rice WRKY gene13	TRANSCRIPTION FACTOR WRKY13	oswrky13	1	BK005016. AY870602. EF143611. WRKY84 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY16 in Wu et al. (2005). OsWRKY 45 in Lu et al. 2020. OsWRKY69 in Islam et al. 2023. GO:0071731: response to nitric oxide.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0750100	LOC_Os01g54600.1				GO:0030912 - response to deep water, GO:0051607 - defense response to virus, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009863 - salicylic acid mediated signaling pathway, GO:0043565 - sequence-specific DNA binding	TO:0000020 - black streak dwarf virus resistance, TO:0000175 - bacterial blight disease resistance, TO:0000205 - white-backed planthopper resistance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance	
6525	WRKY14	OsWRKY14	WRKY GENE 14	Rice WRKY gene14	TRANSCRIPTION FACTOR WRKY14		1	BK005017. AY870603. D24303. C26098. WRKY33 in Zhang and Wang (2005) and in Berri et al. (2009), Han et al. 2023.  GO:1905627: regulation of serotonin biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os01g0730700	LOC_Os01g53040.1				GO:0051607 - defense response to virus, GO:0009409 - response to cold, GO:0042427 - serotonin biosynthetic process, GO:0010150 - leaf senescence, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0007568 - aging, GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus	TO:0000148 - viral disease resistance, TO:0000249 - leaf senescence, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance	PO:0001054 - 4 leaf senescence stage 
6526	WRKY15	OsWRKY15	WRKY GENE 15	Rice WRKY gene15	TRANSCRIPTION FACTOR WRKY15		1	BK005018. WRKY97 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY11 in Wu et al. (2005) and Sun et al. 2014. WRKY53 in Li et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0656400	LOC_Os01g46800.1				GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
6527	WRKY16	OsWRKY16	WRKY GENE16	Rice WRKY gene16	TRANSCRIPTION FACTOR WRKY		1	BK005019. AU164995. AY341855. AY870604. WRKY35 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY12 in Wu et al. (2005) and Sun et al. 2014.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance	Os01g0665500/Os01g0665750	LOC_Os01g47560.1				GO:0009845 - seed germination, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009629 - response to gravity, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0009413 - response to flooding	TO:0000276 - drought tolerance, TO:0002693 - gravity response trait, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000524 - submergence tolerance	PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage 
6528	WRKY17	OsWRKY17	RICE WRKY GENE17	Rice WRKY gene17	TRANSCRIPTION FACTOR WRKY17		1	BK005020. AY341842. AY870605. WRKY28 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY24 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os01g0972800	LOC_Os01g74140.1				GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6529	WRKY18	OsWRKY18	RICE WRKY GENE18	Rice WRKY gene18	TRANSCRIPTION FACTOR WRKY18		10	LOC_Os10g18099. BK005021. WRKY65 in Zhang and Wang (2005) and Berri et al. (2009). Os10g0328400 (in Rap3 (build5)).	 Tolerance and resistance - Disease resistance		LOC_Os10g18099				GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
6530	WRKY19	OsWRKY19	WRKY GENE 19	Rice WRKY gene19	TRANSCRIPTION FACTOR WRKY19		5	BK005022. WRKY107 in Zhang and Wang (2005). WRKY60 in Wu et al. (2005) and Sun et al. 2014.  WRKY110 in Berri et al. (2009). HQ858860. up-regulated after fertilization (Abiko et al. 2013).	 Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os05g0571200	LOC_Os05g49620.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009790 - embryonic development, GO:0006952 - defense response	TO:0000346 - tiller number, TO:0000303 - cold tolerance, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0002759 - grain number, TO:0000259 - heat tolerance, TO:0000040 - panicle length, TO:0000207 - plant height	
6531	WRKY2	OsWRKY2	RICE WRKY GENE2	Rice WRKY gene2	TRANSCRIPTION FACTOR WRKY2		10	BK005005. WRKY1 in Zhang and Wang (2005) and Berri et al. (2009). WRKY4 in Wu et al. (2005). WRKY86 in Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os10g0579400	LOC_Os10g42850.1				GO:0010150 - leaf senescence, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0007568 - aging, GO:0003700 - transcription factor activity	TO:0000249 - leaf senescence, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000074 - blast disease	PO:0001054 - 4 leaf senescence stage 
6532	WRKY20	OsWRKY20	RICE WRKY GENE20	Rice WRKY gene20	TRANSCRIPTION FACTOR WRKY20		1	LOC_Os01g60540. BK005023. WRKY40 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY19 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0820900	LOC_Os01g60540.1				GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	
6533	WRKY21	OsWRKY21	RICE WRKY GENE21	Rice WRKY gene21	TRANSCRIPTION FACTOR WRKY21	oswrky21	1	BK005024. AY870606. WRKY68 in Zhang and Wang (2005) and Berri et al. (2009). TO:0020102: phosphate content. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0821600	LOC_Os01g60640.1				GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0001666 - response to hypoxia, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000015 - oxygen sensitivity, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	
6534	WRKY22	OsWRKY22	WRKY GENE 22	Rice WRKY gene22	TRANSCRIPTION FACTOR WRKY22		1	BK005025. WRKY38 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY17 in Wu et al. (2005) and Sun et al. 2014. OsWRKY116 in Khan et al. 2022.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os01g0820400	LOC_Os01g60490.1				GO:0002213 - defense response to insect, GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009409 - response to cold	TO:0000175 - bacterial blight disease resistance, TO:0000205 - white-backed planthopper resistance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
6535	WRKY23	OsWRKY23	WRKY GENE 23	Rice WRKY gene23	TRANSCRIPTION FACTOR WRKY23		1	BK005026. AY341845. AY870607. WRKY31 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY15 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0734000	LOC_Os01g53260.1				GO:0009408 - response to heat, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0043565 - sequence-specific DNA binding, GO:0009751 - response to salicylic acid stimulus	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
6536	WRKY24	OsWRKY24	WRKY GENE 24	Rice WRKY gene24	TRANSCRIPTION FACTOR WRKY24		1	BK005027. AY341849. AY870608. WRKY22 in Zhang and Wang (2005), in Wu et al. (2005), in Berri et al. (2009), in Sun et al. 2014. OsWRKY30 in Han et al. 2023. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf	Os01g0826400	LOC_Os01g61080.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0001666 - response to hypoxia, GO:0002213 - defense response to insect, GO:0009651 - response to salt stress, GO:0009646 - response to absence of light, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009413 - response to flooding, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0080027 - response to herbivore, GO:0009629 - response to gravity, GO:0009739 - response to gibberellin stimulus	TO:0000460 - light intensity sensitivity, TO:0000424 - brown planthopper resistance, TO:0000255 - sheath blight disease resistance, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0002693 - gravity response trait, TO:0000172 - jasmonic acid sensitivity, TO:0000454 - stem borer resistance, TO:0000074 - blast disease, TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000432 - temperature response trait, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0007045 - coleoptile emergence stage , PO:0020039 - leaf lamina 
6537	WRKY25	OsWRKY25, OsWRKY44, WRKY44	WRKY GENE 25	WRKY GENE 44.	TRANSCRIPTION FACTOR WRKY25		8	LOC_Os08g13840. BK005028. BK005047. OsWRKY56 in Zhang and Wang (2005) and Berri et al. (2009). WRKY73 in Wu et al. (2005)	 Tolerance and resistance - Disease resistance	Os08g0235800	LOC_Os08g13840.1, LOC_Os08g13840.2				GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6538	WRKY26	OsWRKY26, OsWRKY59, DLN19, OsDLN19	WRKY GENE 26	Rice WRKY gene 26, Rice WRKY gene 59, DLN repressor 19, DLN motif protein 19	TRANSCRIPTION FACTOR WRKY26		1	BK005029. BK005062. AY870609. D43156. HQ858873. WRKY36 in Zhang and Wang (2005) and Berri et al. (2009). WRKY13 in Wu et al. (2005) and Sun et al. 2014. OsWRKY62 in Li et al. 2023.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os01g0714800	LOC_Os01g51690.1				GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0007568 - aging, GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000249 - leaf senescence, TO:0000424 - brown planthopper resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0001054 - 4 leaf senescence stage 
6539	WRKY27	OsWRKY27	RICE WRKY GENE27	Rice WRKY gene27	TRANSCRIPTION FACTOR WRKY27		1	BK005030. WRKY32 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY8 in Wu et al. (2005) and Sun et al. 2014. WRKY5 in Xu et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0586800	LOC_Os01g40430.1				GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0010188 - response to microbial phytotoxin, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0009635 - response to herbicide	TO:0006001 - salt tolerance, TO:0000058 - herbicide sensitivity, TO:0000175 - bacterial blight disease resistance	
6540	WRKY28	OsWRKY28, DLN170, OsDLN170	WRKY GENE 28	Rice WRKY gene28, DLN repressor 170, DLN motif protein 170	TRANSCRIPTION FACTOR WRKY28		6	BK005031. WRKY4 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY66 in Wu et al.(2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os06g0649000	LOC_Os06g44010.1				GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0051607 - defense response to virus	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000148 - viral disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000205 - white-backed planthopper resistance	
6541	WRKY29	OsWRKY29	WRKY GENE 29	Rice WRKY gene29	TRANSCRIPTION FACTOR WRKY29		7	BK005032. AY341858. WRKY49 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY67 in Wu et al. (2005).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os07g0111400	LOC_Os07g02060.1				GO:0006952 - defense response, GO:0007568 - aging, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000401 - plant growth hormone sensitivity, TO:0000188 - drought sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity	PO:0001054 - 4 leaf senescence stage 
6542	WRKY3	OsWRKY3	WRKY GENE3	Rice WRKY gene3	TRANSCRIPTION FACTOR WRKY3		3	BK005006. AY341859. AK069091 in Qiu et al. 2004. WRKY37 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0758000	LOC_Os03g55080.1				GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress	TO:0000188 - drought sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
6543	WRKY30	OsWRKY30	WRKY GENE 30	Rice WRKY gene30	TRANSCRIPTION FACTOR WRKY30		8	BK005033, DQ298180. AY870610. WRKY47 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY76 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0499300	LOC_Os08g38990.1, LOC_Os08g38990.2, LOC_Os08g38990.3, LOC_Os08g38990.4				GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0050832 - defense response to fungus, GO:0080027 - response to herbivore, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect	TO:0000255 - sheath blight disease resistance, TO:0000454 - stem borer resistance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
6544	WRKY31	OsWRKY31	WRKY GENE 31	Rice WRKY gene31	TRANSCRIPTION FACTOR WRKY31		6	BK005034. WRKY6 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY65 in Wu et al. (2005). OsWRKY39 in Du et al. 2021. OsWKRYq6 in Du et al. 2022. 	 Tolerance and resistance - Disease resistance	Os06g0504900	LOC_Os06g30860.1				GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
6545	WRKY32	OsWRKY32	WRKY GENE 32	Rice WRKY gene32	TRANSCRIPTION FACTOR WRKY32		2	BK005035. WRKY17 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY30 in Wu et al. (2005).	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os02g0770500	LOC_Os02g53100.1				GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance, TO:0000175 - bacterial blight disease resistance	
6546	WRKY33	OsWRKY33	WRKY GENE 33	Rice WRKY gene33	TRANSCRIPTION FACTOR WRKY33		9	BK005036.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
6547	WRKY34	OsWRKY34	WRKY GENE 34	Rice WRKY gene34	TRANSCRIPTION FACTOR WRKY34		2	LOC_Os02g43560. BK005037. WRKY12 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY28 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os02g0652100	LOC_Os02g43560.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
6548	WRKY35	OsWRKY35	WRKY GENE 35	Rice WRKY gene35	TRANSCRIPTION FACTOR WRKY35		4	LOC_Os04g39570. BK005038. AY341843. AY341851. WRKY37 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY41 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0471700	LOC_Os04g39570.1, LOC_Os04g39570.2				GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance	
6549	SGSD3	OsWRKY36, WRKY36, OsSGSD3	SMALL GRAIN AND SEMI-DWARF 3	Rice WRKY gene36, small grain and semi-dwarf 3	TRANSCRIPTION FACTOR WRKY36	sgsd3	4	BK005039. HQ858855. WRKY42 in Wu et al. (2005) and Sun et al. 2014. WRKY111 in Berri et al. (2009). OsWRKY34 in Kim et al. 2021. GO:1901347: negative regulation of secondary cell wall biogenesis.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os04g0545000	LOC_Os04g46060.1				GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009827 - plant-type cell wall modification, GO:0003700 - transcription factor activity, GO:0009834 - secondary cell wall biogenesis, GO:0043565 - sequence-specific DNA binding	TO:0000397 - grain size, TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0000731 - lignin content, TO:0000361 - stem anatomy and morphology trait, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance	
6550	WRKY37	OsWRKY37	WRKY GENE 37	Rice WRKY gene37	TRANSCRIPTION FACTOR WRKY37		4	LOC_Os04g50920. BK005040. AJ575239. WRKY34 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY43 in Wu et al. (2005).	 Other,  Tolerance and resistance - Disease resistance,  Seed	Os04g0597300	LOC_Os04g50920.1				GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
6551	WRKY38	OsWRKY38	WRKY GENE 38	Rice WRKY gene38	TRANSCRIPTION FACTOR WRKY38				 Tolerance and resistance - Disease resistance						GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response		
6552	WRKY39	OsWRKY39	WRKY GENE 39	Rice WRKY gene39	TRANSCRIPTION FACTOR WRKY39		2	LOC_Os02g16540. BK005042. WRKY54 in Zhang and Wang (2005) and Berri et al. (2009). WRKY26 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os02g0265200	LOC_Os02g16540.1, LOC_Os02g16540.2				GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
6553	WRKY4	OsWRKY4, WRKY122, OsWRKY122	WRKY GENE 4	Rice WRKY gene4	TRANSCRIPTION FACTOR WRKY4	OsWRKY45-1, OsWRKY45-2	3	BK005007. AY341852. AY341848. WRKY2 in Zhang and Wang (2005) and Berri et al. (2009). WRKY36 in Wu et al. (2005) and Sun et al. 2014. WRKY120 in Berri et al. (2009). 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0758900	LOC_Os03g55164.1				GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0005634 - nucleus	TO:0000173 - ethylene sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	
6554	WRKY40	OsWRKY40	WRKY GENE 40	Rice WRKY gene40	TRANSCRIPTION FACTOR WRKY40		11	LOC_Os11g02530. BK005043. WRKY10 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY90 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0117500	LOC_Os11g02530.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
6555	WRKY41	OsWRKY41, WRKY63, OsWRKY63	WRKY GENE 41	Rice WRKY gene41	TRANSCRIPTION FACTOR WRKY41		11	WRKY41: LOC_Os11g45924, BK005044. WRKY63: LOC_Os11g45920. BK005066. WRKY67 (CA760141) in Zhang and Wang (2005) and in Berri et al. (2009). WRKY93 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance	Os11g0686250	LOC_Os11g45920.1, LOC_Os11g45924.1				GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
6556	WRKY42	OsWRKY42, WRKY-42	WRKY GENE 42	Rice WRKY gene42, WRKY transcription factor 42	TRANSCRIPTION FACTOR WRKY42		2	BK005045. WRKY50 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY27 in Wu et al. (2005) and Sun et al. 2014. up-regulated after fertilization (Abiko et al. 2013).	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0462800	LOC_Os02g26430.1				GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006952 - defense response, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0009790 - embryonic development, GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000188 - drought sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	PO:0001054 - 4 leaf senescence stage 
6557	WRKY43	OsWRKY43	WRKY GENE 43	Rice WRKY gene43	TRANSCRIPTION FACTOR WRKY43		5	LOC_Os05g49210. BK005046. WRKY86 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY59 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0567200	LOC_Os05g49210.1				GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000188 - drought sensitivity	
6559	WRKY45	OsWRKY45, OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2	WRKY GENE 45	Rice WRKY gene45	TRANSCRIPTION FACTOR WRKY45	OsWRKY45-1, OsWRKY45-2, WRKY45-1, WRKY45-2	5	BK005048. DQ298181. AY870611. WRKY71 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY50 in Wu et al. (2005) and Sun et al. 2014. GQ331930, GQ331931, GQ331932 (OsWRKY45-1), GQ331927, GQ331928, GQ331929 (OsWRKY45-2). japonica rice varieties exclusively carry OsWRKY45-1, indica rice varieties all carry OsWRKY45-2. GO:1902065: response to L-glutamate. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os05g0322900	LOC_Os05g25770.1				GO:0009741 - response to brassinosteroid stimulus, GO:0002213 - defense response to insect, GO:0010266 - response to vitamin B1, GO:0042742 - defense response to bacterium, GO:0010033 - response to organic substance, GO:0050832 - defense response to fungus, GO:0003700 - transcription factor activity, GO:0009626 - plant-type hypersensitive response, GO:0009751 - response to salicylic acid stimulus, GO:0080027 - response to herbivore, GO:0002215 - defense response to nematode, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009620 - response to fungus, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009809 - lignin biosynthetic process, GO:0009609 - response to symbiotic bacterium, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0052322 - positive regulation of phytoalexin biosynthetic process, GO:0002237 - response to molecule of bacterial origin, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000429 - salt sensitivity, TO:0000112 - disease resistance, TO:0000303 - cold tolerance, TO:0002668 - jasmonic acid content, TO:0000276 - drought tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000384 - nematode damage resistance, TO:0000424 - brown planthopper resistance, TO:0000454 - stem borer resistance, TO:0000615 - abscisic acid sensitivity, TO:0000397 - grain size, TO:0000175 - bacterial blight disease resistance	
6560	WRKY46	OsWRKY46, WRKY91, OsWRKY91	WRKY GENE 46	WRKY GENE 91	TRANSCRIPTION FACTOR WRKY46		11	LOC_Os11g02480. BK005049. CA755335. WRKY76 in Zhang and Wang (2005) and Berri et al. (2009). WRKY88 in Wu et al. (2005). WRKY46A in Ross et al. (2007). WRKY8 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0116900	LOC_Os11g02480.1, LOC_Os11g02480.2				GO:0043565 - sequence-specific DNA binding, GO:0009411 - response to UV, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0010039 - response to iron ion, GO:0002213 - defense response to insect	TO:0000224 - iron sensitivity, TO:0000261 - insect damage resistance, TO:0000175 - bacterial blight disease resistance, TO:0000160 - UV light sensitivity	
6561	WRKY47	OsWRKY47	WRKY GENE 47	Rice WRKY gene47	TRANSCRIPTION FACTOR WRKY47		7	BK005050. WRKY79 in Zhang and Wang (2005) and Berri et al. (2009). WRKY72 in Wu et al. (2005) and Sun et al. 2014. HQ858848. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf	Os07g0680400	LOC_Os07g48260.1				GO:0009609 - response to symbiotic bacterium, GO:0042742 - defense response to bacterium, GO:0010150 - leaf senescence, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0007568 - aging, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold	TO:0000249 - leaf senescence, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0001054 - 4 leaf senescence stage 
6562	WRKY48	OsWRKY48	WRKY GENE 48	Rice WRKY gene48	TRANSCRIPTION FACTOR WRKY48		5	BK005051. WRKY95 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY53 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os05g0478400	LOC_Os05g40060.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000205 - white-backed planthopper resistance	
6563	WRKY49	OsWRKY49	WRKY GENE 49	Rice WRKY gene49	TRANSCRIPTION FACTOR WRKY49		5	BK005052. WRKY85 in Zhang and Wang (200) and in Berri et al. (2009). WRKY58 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf	Os05g0565900	LOC_Os05g49100.1				GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0007568 - aging, GO:0010150 - leaf senescence, GO:0043565 - sequence-specific DNA binding	TO:0000249 - leaf senescence, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage 
6564	WRKY5	OsWRKY5	WRKY GENE 5	Rice WRKY gene5	TRANSCRIPTION FACTOR WRKY5	oswrky5-D, oswrky5	5	BK005008. WRKY43 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY46 in Wu et al. (2005). GO:1900057: positive regulation of leaf senescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os05g0137500	LOC_Os05g04640.1				GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0010271 - regulation of chlorophyll catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009646 - response to absence of light, GO:0042742 - defense response to bacterium, GO:0010150 - leaf senescence, GO:0009409 - response to cold	TO:0000326 - leaf color, TO:0000175 - bacterial blight disease resistance, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance, TO:0002667 - abscisic acid content	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
6565	WRKY50	OsWRKY50	WRKY GENE 50	Rice WRKY gene50	TRANSCRIPTION FACTOR WRKY50		11	BK005053. WRKY51 in Qiu et al. 2004. WRKY11 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY91 in Wu et al. (2005). WRKY50 and WRKY110 in Choi et al. 2017. GO:0090351: seedling development. TO:0000949: seedling growth and development trait.	 Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os11g0117600	LOC_Os11g02540.1				GO:0043565 - sequence-specific DNA binding, GO:0002213 - defense response to insect, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009845 - seed germination	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000205 - white-backed planthopper resistance, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
6566	WRKY52	OsWRKY52	WRKY GENE 52	Rice WRKY gene52	TRANSCRIPTION FACTOR WRKY52		11	BK005055. WRKY7 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY87 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os11g0116600	LOC_Os11g02470.1				GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000205 - white-backed planthopper resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	
6567	WRKY53	OsWRKY53, WRKY-53	WRKY GENE 53	Rice WRKY gene53	TRANSCRIPTION FACTOR WRKY53	oswrky53, wrky53, Cr-oswrky53	5	BK005056. WRKY61 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY51 in Wu et al. (2005) and Sun et al. 2014. XB21 interacting protein (XB21IP). the target of miRNA novel-0586-5p (Fang et al. 2017). GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1903276: regulation of sodium ion export across plasma membrane. GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Disease resistance,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Tolerance and resistance - Insect resistance	Os05g0343400	LOC_Os05g27730.1				GO:0055078 - sodium ion homeostasis, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0002213 - defense response to insect, GO:0006952 - defense response, GO:0009742 - brassinosteroid mediated signaling, GO:0009409 - response to cold, GO:0002237 - response to molecule of bacterial origin, GO:0009408 - response to heat, GO:0009609 - response to symbiotic bacterium, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0080027 - response to herbivore, GO:0031349 - positive regulation of defense response, GO:0009746 - response to hexose stimulus, GO:0055065 - metal ion homeostasis, GO:0050832 - defense response to fungus, GO:0010150 - leaf senescence, GO:0043565 - sequence-specific DNA binding, GO:0009646 - response to absence of light, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009826 - unidimensional cell growth, GO:0009414 - response to water deprivation, GO:0042127 - regulation of cell proliferation	TO:0006001 - salt tolerance, TO:0000391 - seed size, TO:0000495 - chlorophyll content, TO:0000307 - hexose content, TO:0000255 - sheath blight disease resistance, TO:0000357 - growth and development trait, TO:0000074 - blast disease, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000397 - grain size, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000424 - brown planthopper resistance, TO:0000734 - grain length, TO:0000460 - light intensity sensitivity, TO:0000206 - leaf angle, TO:0000249 - leaf senescence, TO:0000172 - jasmonic acid sensitivity, TO:0000333 - sugar content, TO:0000326 - leaf color, TO:0000454 - stem borer resistance, TO:0000166 - gibberellic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
6568	WRKY54	OsWRKY54	WRKY GENE 54	Rice WRKY gene54	TRANSCRIPTION FACTOR WRKY54		5	LOC_Os05g40080. BK005057. WRKY93 in Zhang and Wang (2005) and in Berri et al. (2005). WRKY56 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0478800	LOC_Os05g40080.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
6569	WRKY55	OsWRKY55	WRKY GENE 55	Rice WRKY gene55	TRANSCRIPTION FACTOR WRKY55	w31ko	3	BK005058. CF282152, CF330819, CF303772, CF282153, CF330818, CF305084, CF328161. WRKY72 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY31 in Wu et al. (2005), Phule et al. 2018, Wang et al. 2023, Laflamme 2023, Naithani et al. 2023. PO:0030123: panicle inflorescence. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.	 Character as QTL - Germination,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0321700	LOC_Os03g20550.3, LOC_Os03g20550.2, LOC_Os03g20550.1				GO:0034059 - response to anoxia, GO:0006952 - defense response, GO:0010200 - response to chitin, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009845 - seed germination, GO:0009413 - response to flooding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0016049 - cell growth, GO:0009629 - response to gravity, GO:0009737 - response to abscisic acid stimulus, GO:0002238 - response to molecule of fungal origin, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus	TO:0000145 - internode length, TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000074 - blast disease, TO:0002693 - gravity response trait	PO:0009049 - inflorescence , PO:0007045 - coleoptile emergence stage , PO:0020103 - flag leaf , PO:0020104 - leaf sheath , PO:0007057 - 0 seed germination stage , PO:0009005 - root 
6570	WRKY56	OsWRKY56	WRKY GENE 56	Rice WRKY gene56	TRANSCRIPTION FACTOR WRKY56		1	LOC_Os01g62514. BK005059. WRKY108 in Berri et al. (2009). Os01g0843800(build5)->Os01g0842801(IRGSP1).	 Tolerance and resistance - Disease resistance	Os01g0842801	LOC_Os01g62514.1				GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
6571	WRKY57	OsWRKY57	WRKY GENE 57	Rice WRKY gene57	TRANSCRIPTION FACTOR WRKY57		12	BK005060. AY341860. WRKY73 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY95 in Wu et al. (2005). WRKY92 (BX000496_51548~54565 bp) in Qiu et al. 2004, Rice WRKY Working Group 2012.	 Tolerance and resistance - Disease resistance	Os12g0102300	LOC_Os12g01180.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response		
6572	WRKY58	OsWRKY58	WRKY GENE 58	Rice WRKY gene58	TRANSCRIPTION FACTOR WRKY58		5	BK005061. WRKY108 in Zhang and Wang (2005). WRKY112 in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os05g0528500	LOC_Os05g45230.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009751 - response to salicylic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
6574	WRKY6	OsWRKY6, WRKY-6, DLN103, OsDLN103	WRKY GENE6	Rice WRKY gene6, DLN repressor 103, DLN motif protein 103	TRANSCRIPTION FACTOR WRKY6		3	BK005009. WRKY102 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY38 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0798500	LOC_Os03g58420.2, LOC_Os03g58420.1				GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009751 - response to salicylic acid stimulus, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
6575	WRKY60	OsWRKY60	WRKY GENE 60	Rice WRKY gene60	TRANSCRIPTION FACTOR WRKY60		3	BK005063. AU162739. WRKY25 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY34 in Wu et al.(2005).	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os03g0657400	LOC_Os03g45450.1				GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0002213 - defense response to insect, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000175 - bacterial blight disease resistance, TO:0000205 - white-backed planthopper resistance	
6577	WRKY62	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10, OsWRKY62-1, OsWRKY62-2	WRKY GENE 62	Rice WRKY gene62, XA21 binding protein 10, WRKY transcription factor 62	TRANSCRIPTION FACTOR WRKY62		9	BK005065. DQ298182. DAA05127. WRKY14 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY82 in Wu et al. (2005) and Sun et al. 2014. GO:1900150 regulation of defense response to fungus. GO:1900425 negative regulation of defense response to bacterium. GO:2000378: negative regulation of reactive oxygen species metabolic process. TO:0020076: phenolic compound content. GO:0080142: regulation of salicylic acid biosynthetic process. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0080141: regulation of jasmonic acid biosynthetic process. GO:0062207: regulation of pattern recognition receptor signaling pathway. 	 Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os09g0417800	LOC_Os09g25070.2, LOC_Os09g25070.1				GO:0009414 - response to water deprivation, GO:0002238 - response to molecule of fungal origin, GO:0009409 - response to cold, GO:0002237 - response to molecule of bacterial origin, GO:0001666 - response to hypoxia, GO:0009651 - response to salt stress, GO:0031349 - positive regulation of defense response, GO:0031348 - negative regulation of defense response, GO:0009751 - response to salicylic acid stimulus, GO:0009699 - phenylpropanoid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0043565 - sequence-specific DNA binding, GO:0050832 - defense response to fungus, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0052322 - positive regulation of phytoalexin biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0048364 - root development, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009620 - response to fungus, GO:0009624 - response to nematode, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009611 - response to wounding, GO:0009697 - salicylic acid biosynthetic process, GO:0009695 - jasmonic acid biosynthetic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000112 - disease resistance, TO:0000227 - root length, TO:0002668 - jasmonic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000656 - root development trait, TO:0000205 - white-backed planthopper resistance, TO:0000175 - bacterial blight disease resistance	PO:0001031 - 4 root elongation stage , PO:0009005 - root 
6579	WRKY64	OsWRKY64	WRKY GENE 64	Rice WRKY gene64	TRANSCRIPTION FACTOR WRKY64		12	BK005067. DQ298183. WRKY75 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY97 in Wu et al. (2005) and Sun et al. 2014. OsWRKY40 in Wang et al. 2023.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0116700	LOC_Os12g02450.1				GO:0009651 - response to salt stress, GO:0042594 - response to starvation, GO:0010039 - response to iron ion, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0031667 - response to nutrient levels, GO:0051607 - defense response to virus, GO:0016036 - cellular response to phosphate starvation, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat	TO:0000303 - cold tolerance, TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance, TO:0000224 - iron sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000148 - viral disease resistance	
6580	WRKY65	OsWRKY65	WRKY GENE65	Rice WRKY gene65	TRANSCRIPTION FACTOR WRKY65		12	BK005068. WRKY74 in Zhang and wang (2005) and in Berri et al. (2009). WRKY96 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0116800	LOC_Os12g02470.1				GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
6581	WRKY66	OsWRKY66	WRKY GENE 66	Rice WRKY gene66	TRANSCRIPTION FACTOR WRKY66		2	BK005069. WRKY57 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY29 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0698800	LOC_Os02g47060.1				GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	
6582	WRKY67	OsWRKY67	WRKY GENE 67	Rice WRKY gene67	TRANSCRIPTION FACTOR WRKY67		5	BK005070. BE230596, BM419201. WRKY63 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY47 in Wu et al. (2005) and Sun et al. 2014. HQ858875. GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0183100	LOC_Os05g09020.1, LOC_Os05g09020.2				GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0009409 - response to cold, GO:0005634 - nucleus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
6583	WRKY68	OsWRKY68	WRKY GENE 68	Rice WRKY gene68	TRANSCRIPTION FACTOR WRKY68		4	LOC_Os04g51560. BK005071. WRKY30 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY44 in Wu et al. (2005).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0605100	LOC_Os04g51560.1				GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000188 - drought sensitivity	
6584	WRKY69	OsWRKY69	WRKY GENE 69	Rice WRKY gene69	TRANSCRIPTION FACTOR WRKY69		8	BK005072. WRKY53 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY75 in Wu et al. (2005). HQ858835.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os08g0386200	LOC_Os08g29660.1				GO:0002213 - defense response to insect, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0007568 - aging, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000205 - white-backed planthopper resistance, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage 
6585	WRKY7	OsWRKY7	WRKY GENE 7	Rice WRKY gene7	TRANSCRIPTION FACTOR WRKY7	oswrky7-Cas9-a, oswrky7-Cas9-b, oswrky7-Cas9-c	5	BK005010. DQ298179. AU093050. WRKY46 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY57 in Wu et al (2007) and Sun et al. 2014. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0537100	LOC_Os05g46020.1				GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0043067 - regulation of programmed cell death, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0030912 - response to deep water, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0002237 - response to molecule of bacterial origin, GO:0009651 - response to salt stress	TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000357 - growth and development trait, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
6586	WRKY70	OsWRKY70	WRKY GENE 70	Rice WRKY gene70	TRANSCRIPTION FACTOR WRKY70	oswrky70-7, oswrky70-10	5	BK005073, DQ298184. WRKY60 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY52 in Wu et al. (2005) and Sun et al. 2014. OsWRKY24 in Islam et al. 2023. PO:0030123: panicle inflorescence. GO:1900150: regulation of defense response to fungus. GO:1903426: regulation of reactive oxygen species biosynthetic process. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os05g0474800	LOC_Os05g39720.1				GO:0006979 - response to oxidative stress, GO:0000165 - MAPKKK cascade, GO:0002679 - respiratory burst during defense response, GO:0009646 - response to absence of light, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009845 - seed germination, GO:0009629 - response to gravity, GO:0009413 - response to flooding, GO:0002221 - pattern recognition receptor signaling pathway, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0050832 - defense response to fungus, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000315 - bacterial disease resistance, TO:0000261 - insect damage resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000454 - stem borer resistance, TO:0000273 - armyworm resistance, TO:0002668 - jasmonic acid content, TO:0000424 - brown planthopper resistance, TO:0000255 - sheath blight disease resistance, TO:0000524 - submergence tolerance, TO:0002693 - gravity response trait, TO:0000460 - light intensity sensitivity, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0002657 - oxidative stress, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0002730 - grain shape	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
6587	WRKY72	OsWRKY72, WRKY-72	WRKY GENE 72	Rice WRKY gene72	TRANSCRIPTION FACTOR WRKY72		11	HQ858851. BK005075. WRKY78 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY92 in Wu et al. (2005) and Sun et al. 2014.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os11g0490900	LOC_Os11g29870.1				GO:0010150 - leaf senescence, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0007568 - aging, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000424 - brown planthopper resistance, TO:0000276 - drought tolerance, TO:0000249 - leaf senescence, TO:0000261 - insect damage resistance, TO:0000303 - cold tolerance	PO:0001054 - 4 leaf senescence stage 
6588	WRKY73	OsWRKY73	WRKY GENE 73	Rice WRKY gene73	TRANSCRIPTION FACTOR WRKY73		6	BK005076. WRKY5 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY63 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os06g0146250	LOC_Os06g05380.1				GO:0009408 - response to heat, GO:0010150 - leaf senescence, GO:0007568 - aging, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
6589	WRKY74	OsWRKY74	WRKY GENE 74	Rice WRKY gene74	TRANSCRIPTION FACTOR WRKY74		9	BK005077. WRKY100 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY80 in Wu et al. (2005) and Sun et al. 2014. TO:0006045: phosphorus concentration.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Character as QTL - Germination	Os09g0334500	LOC_Os09g16510.1				GO:0006952 - defense response, GO:0009413 - response to flooding, GO:0006995 - cellular response to nitrogen starvation, GO:0009409 - response to cold, GO:0010106 - cellular response to iron ion starvation, GO:0009845 - seed germination, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0009408 - response to heat, GO:0009629 - response to gravity	TO:0000224 - iron sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000011 - nitrogen sensitivity, TO:0000346 - tiller number, TO:0000524 - submergence tolerance, TO:0002693 - gravity response trait, TO:0000396 - grain yield, TO:0000043 - root anatomy and morphology trait	PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage , PO:0025034 - leaf , PO:0009005 - root 
6590	WRKY75	OsWRKY75	WRKY GENE 75	Rice WRKY gene75	TRANSCRIPTION FACTOR WRKY75		5	LOC_Os05g25700 (obsolete). BK005078. WRKY70 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY49 in Wu et al. (2005) and Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os05g0321900					GO:0009414 - response to water deprivation, GO:0002213 - defense response to insect, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity, TO:0000205 - white-backed planthopper resistance	
6591	WRKY76	OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3	WRKY GENE 76	Rice WRKY gene76	TRANSCRIPTION FACTOR WRKY76		9	BK005079. AY323479. AF467736. DQ298185. WRKY58 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY81 in Wu et al. (2005). GO:1900150: regulation of defense response to fungus. GO:1900425 negative regulation of defense response to bacterium. GO:2000378: negative regulation of reactive oxygen species metabolic process. TO:0020076: phenolic compound content. GO:0080142: regulation of salicylic acid biosynthetic process. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0080141: regulation of jasmonic acid biosynthetic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os09g0417600	LOC_Os09g25060.1				GO:0050832 - defense response to fungus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0031348 - negative regulation of defense response, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009695 - jasmonic acid biosynthetic process, GO:0009697 - salicylic acid biosynthetic process, GO:0009651 - response to salt stress, GO:0009699 - phenylpropanoid biosynthetic process, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009733 - response to auxin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0048364 - root development, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0001666 - response to hypoxia, GO:0009409 - response to cold	TO:0000175 - bacterial blight disease resistance, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0002668 - jasmonic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0000227 - root length, TO:0000656 - root development trait, TO:0000074 - blast disease, TO:0000015 - oxygen sensitivity	PO:0025034 - leaf , PO:0001031 - 4 root elongation stage 
6592	WRKY77	OsWRKY77, WRKY-77	WRKY GENE 77	Rice WRKY gene77	TRANSCRIPTION FACTOR WRKY77		1	BK005080. AY341846. WRKY20 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY7 in Wu et al. (2005) and Sun et al. 2014. a gene in rice zygotes with paternal allele-dependent expression. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0584900	LOC_Os01g40260.1				GO:0051607 - defense response to virus, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000148 - viral disease resistance	
6593	WRKY87	OsWRKY87, OsSUSIBA2-like	WRKY GENE 87	Rice WRKY gene87, SUSABA2 Ortholog, Sugar signalling in barley 2-like	TRANSCRIPTION FACTOR WRKY		7	BK005212. AY341850. OsWRKY78 in Xie et al. (2005), Ryu et al.(2006), Ross et al. (2007), Qiu et al. 2017. OsWRKY59 in Zhang & Wang (2005) and Berri et al. (2009). OsWRKY70 in Wu et al. (2005). AY324393. HQ858834.	 Tolerance and resistance - Disease resistance	Os07g0583700	LOC_Os07g39480.1				GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	
6594	WRKY102	OsWRKY102	WRKY GENE 102		TRANSCRIPTION FACTOR WRKY102		1	BK005213. AY341853. WRKY59 in Qiu et al. 2004. WRKY79 in Xie et al. (2005), in Ryu et al. (2006), and in Ross et al. (2007).  WRKY90 in Zhang and Wang (2005) and Berri et al. (2005). WRKY1 in Wu et al. (2005). WRKY12 in Pooja et al. (2015). WRKY100 in Rice WRKY Working Group (2012) and Choi et al. 2017. GO:1901347: negative regulation of secondary cell wall biogenesis.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os01g0182700	LOC_Os01g08710.1, LOC_Os01g08710.2				GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009827 - plant-type cell wall modification, GO:0009834 - secondary cell wall biogenesis, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000361 - stem anatomy and morphology trait, TO:0000172 - jasmonic acid sensitivity, TO:0000112 - disease resistance, TO:0000731 - lignin content, TO:0000397 - grain size, TO:0000401 - plant growth hormone sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity, TO:0000179 - biotic stress trait, TO:0000615 - abscisic acid sensitivity	
6595	WRKY8	OsWRKY8	WRKY GENE 8	Rice WRKY gene8	TRANSCRIPTION FACTOR WRKY8		5	BK005011. AY341857 in Qiu et al. 2014. AY870600. WRKY44 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY62 in Wu et al. (2005). OsWRKY061 in Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Character as QTL - Germination	Os05g0583000	LOC_Os05g50610.1, LOC_Os05g50610.2				GO:0003700 - transcription factor activity, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009629 - response to gravity, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009408 - response to heat	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0002693 - gravity response trait	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
6596	WRKY90	OsWRKY90	WRKY GENE 90	Rice WRKY gene90	TRANSCRIPTION FACTOR WRKY 90		9	BK005214. AF459793. WRKY13 in Zhang and Wang (2005) and Berri et al. (2009). WRKY83 in Wu et al. (2005). WRKY80 in Xie et al. (2005), Ryu et al. (2006), Ross et al. (2007), Ricachenevsky et al. (2010) and Mao et al. (2017). OsiWRKY in Guo et al. (2004).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0481700	LOC_Os09g30400.1, LOC_Os09g30400.2, LOC_Os09g30400.3				GO:0009409 - response to cold, GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0010039 - response to iron ion, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000249 - leaf senescence, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000224 - iron sensitivity, TO:0000074 - blast disease	PO:0001054 - 4 leaf senescence stage 
6597	WRKY61	OsWRKY61, OsWRKY103, WRKY103	WRKY GENE 61	Rice WRKY gene61	TRANSCRIPTION FACTOR WRKY		11	BK005064. BK005215. WRKY66 in Zhang and Wang (2005) and Berri et al. (2009). WRKY94 in Wu et al. (2005) and Sun et al. 2014. WRKY81 (Xie et al. 2005, Ryu et al. 2006) seems to be same as WRKY61.  OsWRKY53-L in  Wen et al. 2023. GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os11g0685700	LOC_Os11g45850.1				GO:0009414 - response to water deprivation, GO:0002758 - innate immune response-activating signal transduction, GO:0006952 - defense response, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000179 - biotic stress trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
6598	WRKY9	OsWRKY9	WRKY GENE 9	Rice WRKY gene9	TRANSCRIPTION FACTOR WRKY9		1	LOC_Os01g18584. BK005012. WRKY88 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY6 in Wu et al. (2005). Os01g0289600(IRGSP1). Os01g0289666 (in NCBI and UniProt). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0289600	LOC_Os01g18584.1				GO:0009725 - response to hormone stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009414 - response to water deprivation	TO:0000172 - jasmonic acid sensitivity, TO:0000188 - drought sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity	
6602	RCN1	Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 1	Cen-like protein FDR2, RICE CENTRORADIALIS 1	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 1		11	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. Putative phosphatidylethanolamine-binding protein, Putative TFL1/CEN ortholog. TFL1/CEN-like gene.  AF159882(Plant J.29 (6)743-750(2002)). PO:0006318; floret (sensu Poaceae) ; GRO:0007048; 04-stem elongation stage ; GRO:0007189; panicle stage PA1 ; GRO:0007044; 06-heading stage.	 Reproductive organ - Heading date	Os11g0152500	LOC_Os11g05470.1	GR:0100117			GO:0009737 - response to abscisic acid stimulus, GO:0009416 - response to light stimulus, GO:0010229 - inflorescence development, GO:0008429 - phosphatidylethanolamine binding, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000137 - days to heading, TO:0000075 - light sensitivity, TO:0000557 - secondary branch number, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0020039 - leaf lamina , PO:0006321 - primary inflorescence branch , PO:0020148 - shoot apical meristem , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0006322 - second order inflorescence branch , PO:0000230 - inflorescence meristem , PO:0009082 - spikelet floret , PO:0009005 - root 
6603	RCN2	Rcn2, OsRCN2	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 2	RICE CENTRORADIALIS 2	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 2		2	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. Putative phosphatidylethanolamine-binding protein, Putative TFL1/CEN ortholog. TFL1/CEN-like gene. GRO:0007048; 04-stem elongation stage ; GRO:0007189; panicle stage PA1 ; GRO:0007044; 06-heading stage. TO:0000784: inflorescence branch morphology trait.	 Reproductive organ - Heading date,  Reproductive organ - Panicle, Mode of branching	Os02g0531600	LOC_Os02g32950.1	GR:0100118			GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010229 - inflorescence development, GO:0008429 - phosphatidylethanolamine binding	TO:0000137 - days to heading, TO:0000630 - pedicel length, TO:0000557 - secondary branch number, TO:0000674 - phytochemical compound content, TO:0000675 - ferulic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000075 - light sensitivity	PO:0006321 - primary inflorescence branch , PO:0020039 - leaf lamina , PO:0009049 - inflorescence , PO:0020148 - shoot apical meristem , PO:0009025 - vascular leaf , PO:0009005 - root , PO:0006322 - second order inflorescence branch , PO:0000230 - inflorescence meristem , PO:0020104 - leaf sheath 
6610	PH4	Ph4	PLANT HEIGHT 4	Plant height 4			12	QTL	 Vegetative organ - Culm,  Character as QTL - Plant growth activity								
6611	PH3	Ph3	PLANT HEIGHT 3	Plant height 3			6	QTL	 Character as QTL - Plant growth activity,  Vegetative organ - Culm								
6612	PH2	Ph2	PLANT HEIGHT 2	Plant height 2			5	QTL	 Vegetative organ - Culm,  Character as QTL - Plant growth activity								
6613	PH1	Ph1	PLANT HEIGHT 1	Plant height 1			1	QTL	 Vegetative organ - Culm,  Character as QTL - Plant growth activity								
6620	AE	ae	AMYLOSE EXTENDER 						 Seed - Physiological traits - Storage substances						GO:0007275 - multicellular organismal development, GO:0000271 - polysaccharide biosynthetic process		
6622	SSI	OsSSI, SSS 1, SSS1, SS1, OsSS1, SSSI, OsSSSI	SOLUBLE STARCH SYNTHASE I	"Starch synthase-I, \"Soluble starch synthase 1, chloroplastic/amyloplastic\", Starch synthase I"	SOLUBLE STARCH SYNTHASE I	ss1, ss1L	6	EC=2.4.1.21 A2Y9M4(indica), Q0DEC8(japonica). AY299404, D38221, AF165890, D16202, E06904. HQ712142, HQ712143, HQ712144, HQ712145, HQ712146, HQ712147, HQ712148, HQ712149. BGIOSGA021860. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Physiological traits - Storage substances	Os06g0160700	LOC_Os06g06560.1	GR:0061111			GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast, GO:0009011 - starch synthase activity, GO:0009501 - amyloplast, GO:0009413 - response to flooding	TO:0000286 - submergence sensitivity, TO:0000488 - seed composition based quality trait, TO:0000011 - nitrogen sensitivity	PO:0007632 - seed maturation stage , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009010 - seed 
6623	FLO5	OsSSIIIa, SSIII-2, OsSSIII-2, OsSS3A, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5	FLOURY ENDOSPERM 5	SOLUBLE STARCH SYNTHASE III-2, SOLUBLE STARCH SYNTHASE IIIA, floury endosperm 5	SOLUBLE STARCH SYNTHASE IIIA	ss3a, b10, flo5-1, flo5-2	8	AY100469. an RS (resistant starch) locus. TO:0001069: cooking quality trait. 	 Seed - Physiological traits - Storage substances,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Grain quality	Os08g0191433	LOC_Os08g09230.2, LOC_Os08g09230.1	GR:0061114			GO:0005976 - polysaccharide metabolic process, GO:0009011 - starch synthase activity, GO:0009568 - amyloplast starch grain, GO:0009501 - amyloplast, GO:0009269 - response to desiccation, GO:0009507 - chloroplast, GO:0019252 - starch biosynthetic process	TO:0000667 - cooking or brewing quality, TO:0000488 - seed composition based quality trait, TO:0000394 - drought related trait, TO:0000462 - gelatinization temperature	PO:0009089 - endosperm , PO:0009010 - seed 
6707	CAO2	OsCAO2, OsCAO, CAO	CHLOROPHYLLIDE A OXYGENASE 2	chlorophyllide a oxygenase 2, Chlorophyllide a Oxygenase	CHLOROPHYLLIDE A OXYGENASE 2	cao-1, cao-2, cao-3, cao-4, cao-5	10	OsCAO in Morita et al. 2005.	 Biochemical character	Os10g0567100 	LOC_Os10g41760.1				GO:0010277 - chlorophyllide a oxygenase activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding		
6713	CIGR1	OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34	CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1	Chitin-inducible gibberellin-responsive protein 1, Chitin-inducible GA-responsive protein, GRAS protein 34	CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1		7	Q69VG1. AY062209.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os07g0545800	LOC_Os07g36170.1, LOC_Os07g36170.2				GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0006351 - transcription, DNA-dependent	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
6714	CIGR2	OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36	CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 2	Chitin-inducible gibberellin-responsive protein 2, GA response modulator protein, GRAS protein 36	CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 2 		7	Q8GVE1. AY062210.	 Tolerance and resistance - Disease resistance,  Other	Os07g0583600	LOC_Os07g39470.1				GO:0009814 - defense response, incompatible interaction, GO:0042742 - defense response to bacterium, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0009817 - defense response to fungus, incompatible interaction	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	PO:0025034 - leaf 
6715	CPD	CPD	CYCLOBUTAN PYRIMIDINE DIMER PHOTOLYASE	cyclobutane pyrimidine dimer photolyase gene	CYCLOBUTAN PYRIMIDINE DIMER PHOTOLYASE				 Biochemical character						GO:0000719 - photoreactive repair		
6722	EST14	EST14, Est14	ESTERASE 14	Esterase-14	ESTERASE 14		1		 Biochemical character			GR:0060318			GO:0016787 - hydrolase activity		
6724	EYE1	eye1	EARLY YELLOWING 1	early yellowing 1			3		 Vegetative organ - Leaf						GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence		
6725	FLO3	flo3	FLOURY ENDOSPERM 3	floury endosperm3			6		 Seed - Physiological traits - Storage substances					31.4	GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain		
6726	GLH8	glh8	GREEN LEAFHOPPER RESISTANCE 8	Green leafhopper resistance8, Green leafhopper resistance 8, green leafhopper resistance-8				PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060383			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
6732	LOG1	OsLOG1, LOG, Log, log, OsLOG	LONELY GUY 1	LONELY GUY, Lonely Guy, lonely guy, Protein LONELY GUY, Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG	log1-1, log1-2, log1-3, log1-4, log1-5, log1-6, log-1, log-2, log-3, log-4, log-5, log-6	1	phosphoribohydrolase, cytokinin-activating enzyme, cytokinin-specific phosphoribohydrolase, cytokinin nucleoside 5'-monophosphate phosphoribohydrolase, cytokinin nucleotide phosphoribohydrolase. Q5ZC82. miR5144-target. PO:0000230; inflorescence meristem ; PO:0000229; floral meristem ; PO:0009105; inflorescence lateral meristem. TO:0000847: panicle inflorescence morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Shoot apical meristem(SAM),  Character as QTL - Yield and productivity	Os01g0588900	LOC_Os01g40630.1, LOC_Os01g40630.2, LOC_Os01g40630.3	GR:0101253			GO:0009536 - plastid, GO:0009736 - cytokinin mediated signaling, GO:0048608 - reproductive structure development, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010074 - maintenance of meristem identity, GO:0048832 - specification of organ number, GO:0010083 - regulation of vegetative meristem growth, GO:0048509 - regulation of meristem development, GO:0009691 - cytokinin biosynthetic process, GO:0010073 - meristem maintenance, GO:0010076 - maintenance of floral meristem identity	TO:0000050 - inflorescence branching, TO:0006022 - floral organ development trait, TO:0002759 - grain number, TO:0002660 - cytokinin content, TO:0000017 - anatomy and morphology related trait, TO:0006032 - panicle size, TO:0000040 - panicle length, TO:0002659 - pistil number, TO:0000089 - panicle type	PO:0025530 - reproductive shoot system development stage , PO:0000230 - inflorescence meristem , PO:0009105 - inflorescence branch meristem , PO:0000229 - flower meristem 
6734	MIK	MIK	'KITAAKE MUTANT' MINUTE GRAIN				11		 Seed - Morphological traits						GO:0007275 - multicellular organismal development		
6735	NK1	NK1	NOTCHED KERNEL 1						 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
6738	ABA2	OsABA2	ZEAXANTHIN EPOXIDASE 2		ZEAXANTHIN EPOXIDASE 2				 Biochemical character						GO:0009540 - zeaxanthin epoxidase activity		
6742	ASA1	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 1	anthranilate synthase alpha subunit 1, feedback-insensitive a subunit of rice AS	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 1		3	AB022602. JX276472, JX276473, JX276474. TO:0001069: cooking quality trait.	 Seed - Physiological traits - Taste,  Seed - Physiological traits - Storage substances,  Biochemical character	Os03g0826500	LOC_Os03g61120.1				GO:0051955 - regulation of amino acid transport, GO:0004049 - anthranilate synthase activity, GO:0000162 - tryptophan biosynthetic process	TO:0000598 - protein content, TO:0000409 - peak viscosity, TO:0000266 - chalky endosperm, TO:0000196 - amylose content, TO:0000696 - starch content, TO:0000462 - gelatinization temperature, TO:0000134 - alkali digestion	
6743	ASA2	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2, OASA2	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 2	anthranilate synthase alpha subunit 2, Anthranilate synthase alpha 2 subunit	ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 2		3	AB022603. a predicted target of osa-miR5340.	 Tolerance and resistance - Insect resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0264400	LOC_Os03g15780.2, LOC_Os03g15780.5, LOC_Os03g15780.4, LOC_Os03g15780.1				GO:0009409 - response to cold, GO:0004049 - anthranilate synthase activity, GO:0000162 - tryptophan biosynthetic process, GO:0046685 - response to arsenic, GO:0002213 - defense response to insect	TO:0000303 - cold tolerance, TO:0000424 - brown planthopper resistance	
6744	CDPK11	OsCDPK11, OsCPK11, CPK11	CALCIUM-DEPENDENT PROTEIN KINASE 11		CALCIUM-DEPENDENT PROTEIN KINASE 11		3	AC084296, AC087096.	 Reproductive organ - Inflorescence,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os03g0789000	LOC_Os03g57510.1				GO:0005509 - calcium ion binding, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009029 - stamen 
6749	HSP26	OsHSP26, Oshsp26, OsHSP26.7, HSP26.7	26 KDA HEAT SHOCK PROTEIN	26kDa heat shock protein	26 KDA HEAT SHOCK PROTEIN 		3	AB020973. Q10P60. a candidate gene for salt tolerance germinability (STG).	 Tolerance and resistance - Stress tolerance	Os03g0245800	LOC_Os03g14180.1				GO:0009408 - response to heat, GO:0003773 - heat shock protein activity, GO:0009651 - response to salt stress, GO:0000302 - response to reactive oxygen species, GO:0042026 - protein refolding, GO:0009507 - chloroplast	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	PO:0009009 - plant embryo 
6750	HXK1	OsHXK1	HEXOKINASE-1	Hexokinase 1	HEXOKINASE-1	Cashxk1-1, Cashxk1-2	7	EC=2.7.1.1 Q8LH82. AP004668, DQ116383. GO:0140013: meiotic nuclear division. GO:1903428: positive regulation of reactive oxygen species biosynthetic process. GO:1900057: positive regulation of leaf senescence.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Biochemical character	Os07g0446800	LOC_Os07g26540.1	GR:0061107			GO:0010150 - leaf senescence, GO:0009555 - pollen development, GO:0051607 - defense response to virus, GO:0043068 - positive regulation of programmed cell death, GO:0050687 - negative regulation of defense response to virus, GO:0007623 - circadian rhythm, GO:0009749 - response to glucose stimulus, GO:0042593 - glucose homeostasis, GO:0009658 - chloroplast organization, GO:0009646 - response to absence of light, GO:0006096 - glycolysis, GO:0019318 - hexose metabolic process, GO:0004396 - hexokinase activity, GO:0005524 - ATP binding, GO:0051321 - meiotic cell cycle	TO:0000696 - starch content, TO:0000300 - glucose content, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0002667 - abscisic acid content, TO:0000357 - growth and development trait, TO:0000326 - leaf color, TO:0000020 - black streak dwarf virus resistance, TO:0000605 - hydrogen peroxide content	PO:0001007 - pollen development stage , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0007057 - 0 seed germination stage , PO:0009010 - seed , PO:0009047 - stem , PO:0009029 - stamen , PO:0009089 - endosperm 
6752	MADS58	OsMADS58	MADS BOX GENE 58	MADS box gene58, MADS box gene 58, MADS-box transcription factor 58	MADS-BOX TRANSCRIPTION FACTOR 58	mads58	5	AB232157. Q2V0P1. TO:1000024: palea morphology trait.	 Reproductive organ - panicle,  Other,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0203800	LOC_Os05g11414.1				GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009908 - flower development, GO:0043565 - sequence-specific DNA binding, GO:0010582 - floral meristem determinacy, GO:0048445 - carpel morphogenesis, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity	TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0000650 - lemma length, TO:0000622 - flower development trait	PO:0001083 - inflorescence development stage , PO:0007615 - flower development stage , PO:0000229 - flower meristem 
6754	MI	OsMI	SALT TOLERANCE (T)				3		 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress		
6755	NAS4	OsNAS4	NICOTIANAMINE SYNTHASE 4	rice nicotianamine synthase4	NICOTIANAMINE SYNTHASE 4				 Biochemical character						GO:0030410 - nicotianamine synthase activity, GO:0030418 - nicotianamine biosynthetic process		
6756	NAS5	OsNAS5	NICOTIANAMINE SYNTHASE 5	rice nicotianamine synthase5	NICOTIANAMINE SYNTHASE 5				 Biochemical character						GO:0030418 - nicotianamine biosynthetic process, GO:0030410 - nicotianamine synthase activity		
6757	NAS6	OsNAS6	NICOTIANAMINE SYNTHASE 6	rice nicotianamine synthase6	NICOTIANAMINE SYNTHASE 6				 Biochemical character						GO:0030418 - nicotianamine biosynthetic process, GO:0030410 - nicotianamine synthase activity		
6760	PIN6A	OsPIN6A, OsPIN6a	PIN PROTEIN 6A		PIN PROTEIN 6A		1										
6761	PIN6B	OsPIN6B, OsPIN6b	PIN PROTEIN 6B		PIN PROTEIN 6B		5										
6762	PIN1B	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1	PIN PROTEIN 1B	PIN PROTEIN 1A, the rice homolog of A. thaliana EIR1, PIN-FORMED 1b, PIN-formed 1, rice ethylene insensitive root 1	PIN PROTEIN 1B	ospin1b, ospin1b-1, ospin1b-2	2	BR000827. D25054. AF056027. Q5SMQ9. a rice EIR1 (Arabidopsis ethylene insensitive root 1)-like gene.  OsPIN1a in Zou et al. 2014, Xu et al. 2014, Liu et al. 2018, Guo et al. 2019, Chen et al. 2020. OsPIN1 in Xu et al. 2005, Deshpande et al. 2015, Zhang et al. 2019, Shin et al. 2019. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os02g0743400	LOC_Os02g50960.2, LOC_Os02g50960.1				GO:0009409 - response to cold, GO:0010051 - xylem and phloem pattern formation, GO:0010338 - leaf formation, GO:0048449 - floral organ formation, GO:0006970 - response to osmotic stress, GO:0010358 - leaf shaping, GO:0009733 - response to auxin stimulus, GO:0009505 - plant-type cell wall, GO:0048826 - cotyledon morphogenesis, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009921 - auxin efflux carrier complex, GO:0046686 - response to cadmium ion, GO:0009638 - phototropism, GO:0048830 - adventitious root development, GO:0009737 - response to abscisic acid stimulus, GO:0009506 - plasmodesma, GO:0055085 - transmembrane transport, GO:0048364 - root development, GO:0009734 - auxin mediated signaling pathway, GO:0009735 - response to cytokinin stimulus, GO:0009925 - basal plasma membrane, GO:0005737 - cytoplasm, GO:0016021 - integral to membrane, GO:0006897 - endocytosis, GO:0009926 - auxin polar transport, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0045177 - apical part of cell, GO:0051607 - defense response to virus, GO:0009725 - response to hormone stimulus, GO:0010600 - regulation of auxin biosynthetic process, GO:0005886 - plasma membrane, GO:0009630 - gravitropism, GO:0009738 - abscisic acid mediated signaling, GO:0006810 - transport, GO:0005215 - transporter activity	TO:0000276 - drought tolerance, TO:0000017 - anatomy and morphology related trait, TO:0000257 - root branching, TO:0000303 - cold tolerance, TO:0002639 - shoot branching, TO:0000011 - nitrogen sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000227 - root length, TO:0001034 - relative plant height, TO:0000329 - tillering ability, TO:0002652 - root phototropism, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000507 - osmotic adjustment capacity, TO:0000095 - osmotic response sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0006022 - floral organ development trait	PO:0007600 - floral organ differentiation stage , PO:0000019 - gynoecium primordium , PO:0008013 - anther vascular system , PO:0007520 - root development stage , PO:0009066 - anther , PO:0025488 - flower bract primordium , PO:0000016 - lateral root primordium , PO:0009049 - inflorescence , PO:0009037 - lemma 
6763	PIN1C	PIN1B, OsPIN1B, OsPIN1b, OsPIN1c	PIN PROTEIN 1C	PIN PROTEIN 1B	PIN PROTEIN 1C		11	BR000828. gi:32988390. OsPIN1b in Zou et al. 2014, Chen et al. 2020. GO:0060918: auxin transport. GO:1990110: callus formation.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0137000 	LOC_Os11g04190.1				GO:0048449 - floral organ formation, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0048364 - root development, GO:0009733 - response to auxin stimulus, GO:0046686 - response to cadmium ion, GO:0009926 - auxin polar transport, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance, TO:0006022 - floral organ development trait, TO:0000656 - root development trait, TO:0000163 - auxin sensitivity, TO:0000428 - callus induction, TO:0000167 - cytokinin sensitivity	PO:0009037 - lemma , PO:0000019 - gynoecium primordium , PO:0007600 - floral organ differentiation stage , PO:0009066 - anther , PO:0008013 - anther vascular system , PO:0025488 - flower bract primordium 
6764	PIN1A	PIN1C, OsPIN1C, OsPIN1c, OsPIN1a	PIN PROTEIN 1A	PIN PROTEIN 1C, pin-formed1a, pin-formed 1a	PIN PROTEIN 1A		6	BR000829. gi:51535183. OsPIN1c in Zou et al. 2014, Yuan et al. 2019. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport. TO:0001041: root yield. GO:1990110: callus formation.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0232300	LOC_Os06g12610.1				GO:0048449 - floral organ formation, GO:0046685 - response to arsenic, GO:0009735 - response to cytokinin stimulus, GO:0055085 - transmembrane transport, GO:0048830 - adventitious root development, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0009733 - response to auxin stimulus, GO:0009725 - response to hormone stimulus	TO:0000031 - silicon sensitivity, TO:0006022 - floral organ development trait, TO:0000163 - auxin sensitivity, TO:0001006 - adventitious root number, TO:0000578 - root fresh weight, TO:0000401 - plant growth hormone sensitivity, TO:0000428 - callus induction, TO:0000167 - cytokinin sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000084 - root number	PO:0000019 - gynoecium primordium , PO:0007600 - floral organ differentiation stage , PO:0009066 - anther , PO:0008013 - anther vascular system , PO:0025488 - flower bract primordium , PO:0009037 - lemma 
6765	PIN1D	OsPIN1D, OsPIN1d	PIN PROTEIN 1D	pin-formed1d, pin-formed 1d	PIN PROTEIN 1D		12	BR000830. GO:0060918: auxin transport. GO:1990110: callus formation.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0133800	LOC_Os12g04000.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0009735 - response to cytokinin stimulus, GO:0055085 - transmembrane transport, GO:0009733 - response to auxin stimulus, GO:0048449 - floral organ formation	TO:0000163 - auxin sensitivity, TO:0000428 - callus induction, TO:0000167 - cytokinin sensitivity, TO:0006022 - floral organ development trait, TO:0000303 - cold tolerance	PO:0007600 - floral organ differentiation stage , PO:0009037 - lemma , PO:0008013 - anther vascular system , PO:0009066 - anther , PO:0000019 - gynoecium primordium , PO:0025488 - flower bract primordium 
6766	RAC2	OsRAC2, OsRac2	RAC/ROP-TYPE GTPASE 2	Rac-like GTP-binding protein 2, Rac/Rop-type GTPase 2	RAC/ROP-TYPE GTPASE 2		5	AB029509. Q68Y52.	 Biochemical character	Os05g0513800	LOC_Os05g43820.1, LOC_Os05g43820.2, LOC_Os05g43820.3				GO:0005737 - cytoplasm, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0019898 - extrinsic to membrane, GO:0006952 - defense response	TO:0000112 - disease resistance	
6767	RAC4	OsRAC4, OsRac4, ROP4, OsRop4	RAC/ROP-TYPE GTPASE 4	Rac-like GTP-binding protein 4, GTPase protein ROP4, Rac/Rop-type GTPase 4	RAC/ROP-TYPE GTPASE 4		6	Q67VP4. AF380335. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0234200	LOC_Os06g12790.1, LOC_Os06g12790.3				GO:0050832 - defense response to fungus, GO:0007264 - small GTPase mediated signal transduction, GO:0005737 - cytoplasm, GO:0019898 - extrinsic to membrane, GO:0005525 - GTP binding	TO:0000074 - blast disease	
6769	ZIP3	OsZIP3	ZINC TRANSPORTER 3	zinc transporter 3, Zrt-Irt-like protein 3, Zinc-regulated transporter 3, zinc transporter OsZIP3, ZRT-IRT-related protein 3, ZIP transporter 3, Zinc- and iron-regulating transport-like protein 3, Zn- and Fe-regulating transport-like protein 3	ZINC TRANSPORTER 3		4	AY323915. Q7XLD4. GRO:0007139; A-vegetative stage. TO:0006059: cadmium content trait, GO: 0120127: response to zinc ion starvation.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0613000	LOC_Os04g52310.1	GR:0101279			GO:0046686 - response to cadmium ion, GO:0006829 - zinc ion transport, GO:0016020 - membrane, GO:0005739 - mitochondrion, GO:0015691 - cadmium ion transport, GO:0010042 - response to manganese ion, GO:0010269 - response to selenium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0010043 - response to zinc ion	TO:0000351 - zinc sensitivity, TO:0000032 - selenium sensitivity, TO:0000073 - manganese sensitivity	PO:0020104 - leaf sheath , PO:0006016 - leaf epidermis 
6771	PDA	PDS1, PDS, OsPDS, Pds, OsPDA	PHYTOENE DESATURASE	"\"Phytoene dehydrogenase, chloroplastic/chromoplastic\", Phytoene desaturase"	PHYTOENE DESATURASE		3	EC=1.14.99.- A2XDA1(indica). Q0DUI8(japonica). AF049356. The albino phenotype of PDS mutant is caused by a lack of carotenoids.	 Coloration - Others,  Biochemical character	Os03g0184000	LOC_Os03g08570.1				GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0009509 - chromoplast, GO:0009536 - plastid, GO:0016117 - carotenoid biosynthetic process, GO:0055114 - oxidation reduction, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000075 - light sensitivity	
6787	RAD21	OsRAD21	DNA REPAIR PROTEIN RAD21	DNA repair protein RAD21	DNA REPAIR PROTEIN RAD21				 Biochemical character						GO:0003684 - damaged DNA binding		
6788	RAD23	OsRAD23	DNA REPAIR PROTEIN RAD23	Probable DNA repair protein RAD23	DNA REPAIR PROTEIN RAD23		9	DNA REPAIR PROTEIN. Q40742. U63530.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0407200	LOC_Os09g24200.1, LOC_Os09g24200.2				GO:0003684 - damaged DNA binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0006289 - nucleotide-excision repair	TO:0020004 - shoot sodium content, TO:0006001 - salt tolerance	
6789	COLD11	OsRAD51A1, RAD51A1, OsCOLD11	CHILLING TOLERANCE DIVERGENCE 11 	DNA repair protein RAD51A1	DNA REPAIR PROTEIN RAD51A	rad51a1, Osrad51a1, Osrad51a2, Osrad51-1, Osrad51-2, cold11-1, cold11-2, cold11-3, cold11-4	11	AB08262, AB08261. the major gene underlying qCTS11-1. GO:1904975: response to bleomycin. GO:0035825: homologous recombination. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os11g0615800	LOC_Os11g40150.1				GO:0009555 - pollen development, GO:0009409 - response to cold, GO:0006302 - double-strand break repair, GO:0005524 - ATP binding, GO:0007130 - synaptonemal complex assembly, GO:0007131 - reciprocal meiotic recombination, GO:0005634 - nucleus, GO:0051321 - meiotic cell cycle, GO:0006281 - DNA repair, GO:0003684 - damaged DNA binding, GO:0007129 - synapsis, GO:0008094 - DNA-dependent ATPase activity	TO:0000303 - cold tolerance, TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
6790	RAD51B	OsRAD51B, OsRad51B	DNA REPAIR PROTEIN RAD51B	DNA repair protein RAD51B	DNA REPAIR PROTEIN RAD51B	rad51b	5	LOC_Os05g03050. homologous recombination (HR)-related gene. GO:1904975: response to bleomycin.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0121700 	LOC_Os05g03050.1				GO:0010332 - response to gamma radiation, GO:0045002 - double-strand break repair via single-strand annealing, GO:0006302 - double-strand break repair, GO:0008094 - DNA-dependent ATPase activity, GO:0006259 - DNA metabolic process, GO:0005524 - ATP binding, GO:0003677 - DNA binding	TO:0000161 - radiation response trait	
6791	RAD6	OsRAD6	DNA REPAIR PROTEIN RAD6	DNA repair protein RAD6	DNA REPAIR PROTEIN RAD6				 Biochemical character						GO:0003684 - damaged DNA binding		
6792	RADA	OsRADA, OsRadA, OsLonP2, LONP2	DNA REPAIR PROTEIN RADA	DNA repair protein RADA, RadA-like protein, Lon protease 2	DNA REPAIR PROTEIN RADA		6	AB111516. LOC_Os06g05820. Lon Protease Pamily (Peptidase_S16; PF05362). http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml	 Biochemical character	Os06g0151600	LOC_Os06g05820.1				GO:0005524 - ATP binding, GO:0003684 - damaged DNA binding, GO:0008094 - DNA-dependent ATPase activity, GO:0006281 - DNA repair		
6793	RBBI2	RBBI2	BOWMAN-BIRK INHIBITOR 2		BOWMAN-BIRK INHIBITOR 2				 Biochemical character						GO:0004867 - serine-type endopeptidase inhibitor activity		
6794	RBBI3	RBBI3	BOWMAN-BIRK INHIBITOR 3		BOWMAN-BIRK INHIBITOR 3				 Biochemical character						GO:0004867 - serine-type endopeptidase inhibitor activity		
6795	RBCL	rbcL, rbcA, OsrbcL	RUBISCO LARGE SUBUNIT	Ribulose bisphosphate carboxylase large chain precursor, Ribulose bisphosphate carboxylase large chain, RuBisCO large subunit, ribulose 1, 5-bisphosphate carboxylase/oxygenase large chain, RUBISCO large chain, ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit	RUBISCO LARGE SUBUNIT		Pt	EC=4.1.1.39 P0C510. P0C511(indica). P0C512(japonica). D00207. X04789. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46127: Nip064 (cultivar Nipponbare), AY522331 (isolate PA64S). HE573284 (Oryza meridionalis), HE577876 (Oryza coarctata). X15901:CAA34004 (Japonica Group chloroplast genome). GU592207:ADD62840 (Japonica chloroplast comlete genome). L24073 (a chimeric rbcL). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Tolerance and resistance - Stress tolerance,  Biochemical character		LOC_Osp1g00420	GR:0100360			GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0009507 - chloroplast, GO:0009853 - photorespiration, GO:0009573 - chloroplast ribulose bisphosphate carboxylase complex, GO:0019253 - reductive pentose-phosphate cycle, GO:0004497 - monooxygenase activity, GO:0000287 - magnesium ion binding, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0009536 - plastid, GO:0055114 - oxidation reduction, GO:0010332 - response to gamma radiation	TO:0006001 - salt tolerance	
6797	ASTOL1	RCS1, rcs1, OsOASTL-A2, OASTL-A2, OsASTOL1	ARSENITE TOLERANT 1 	rice cysteine synthase (sulfer, nitrogen and light response)-1, rice cysteine synthase-1, O-acetylserine(thiol) lyase A2, arsenite tolerant 1, CYSTEINE SYNTHASE 1	CYSTEINE SYNTHASE 1	astol1, Osastol1	12	EC=2.5.1.47 (Cysteine synthase, CSase, O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase, OAS-TL). Q9XEA6. TO:0006054: arsenic content trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0625000	LOC_Os12g42980.1, LOC_Os12g42980.2	GR:0061412			GO:0019344 - cysteine biosynthetic process, GO:0046938 - phytochelatin biosynthetic process, GO:0009970 - cellular response to sulfate starvation, GO:0042594 - response to starvation, GO:0046685 - response to arsenic, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0006750 - glutathione biosynthetic process, GO:0016740 - transferase activity, GO:0046688 - response to copper ion, GO:0004124 - cysteine synthase activity, GO:0000103 - sulfate assimilation, GO:0009507 - chloroplast, GO:0006535 - cysteine biosynthetic process from serine	TO:0000436 - spikelet sterility, TO:0000164 - stress trait, TO:0000485 - sterility related trait, TO:0000075 - light sensitivity, TO:0000007 - sulfur sensitivity, TO:0000021 - copper sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
6798	RCS2	rcs2	CYSTEINE SYNTHASE 2	rice cysteine synthase (sulfer, nitrogen and light response)-2, rice cysteine synthase-2	CYSTEINE SYNTHASE 2		6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0061413			GO:0030170 - pyridoxal phosphate binding, GO:0006535 - cysteine biosynthetic process from serine, GO:0004124 - cysteine synthase activity, GO:0016740 - transferase activity, GO:0005737 - cytoplasm	TO:0000075 - light sensitivity, TO:0000164 - stress trait	PO:0000003 - whole plant , PO:0009011 - plant structure 
6799	RCS3	rcs3, OsRCS3, OsOASTL-A1, OASTL-A1	CYSTEINE SYNTHASE 3	rice cysteine synthase (sulfer, nitrogen and light response)-3, rice cysteine synthase-3, O-acetylserine(thiol) lyase A1	CYSTEINE SYNTHASE 3	osoastl-a1	3	EC=2.5.1.47 (Cysteine synthase, CSase, O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase, OAS-TL). Q9XEA8. AU095385, AU095386, AU164935, AU164936. TO:1000026: root system arsenic content. TO:1000052: shoot system arsenic content. TO:0006054: arsenic content trait. GO:0071722: detoxification of arsenic-containing substance.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0747800	LOC_Os03g53650.4, LOC_Os03g53650.3, LOC_Os03g53650.1, LOC_Os03g53650.2	GR:0061414			GO:0004124 - cysteine synthase activity, GO:0006535 - cysteine biosynthetic process from serine, GO:0005737 - cytoplasm, GO:0016740 - transferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0005829 - cytosol, GO:0046685 - response to arsenic	TO:0000164 - stress trait, TO:0002673 - amino acid content, TO:0000432 - temperature response trait, TO:0000075 - light sensitivity	PO:0009011 - plant structure , PO:0000003 - whole plant , PO:0020141 - stem node , PO:0000258 - root cortex , PO:0003011 - root vascular system , PO:0009005 - root 
6800	RCS4	rcs4	CYSTEINE SYNTHASE 4	rice cysteine synthase (sulfer, nitrogen and light response)-4, rice cysteine synthase-4	CYSTEINE SYNTHASE 4		6	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Stress tolerance			GR:0061415			GO:0030170 - pyridoxal phosphate binding, GO:0006535 - cysteine biosynthetic process from serine, GO:0016740 - transferase activity, GO:0004124 - cysteine synthase activity, GO:0005737 - cytoplasm	TO:0000164 - stress trait, TO:0000075 - light sensitivity	PO:0000003 - whole plant , PO:0009011 - plant structure 
6816	SE1	SE1	HYBRID STERILITY E 1				3		 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
6818	SH5	OsSH5, RI, SH5/RI, OsRI, VPB1, OsVPB1	SHATTERING 5	Shattering-5, erticillate rachis, verticillate primary branch 1		ri, vpb1, vpb1-1, vpb1-2	5	PO:0009010; seed. BEL1-type homeobox. one of the two rice REPLUMLESS orthologs. TO:1000009: branch angle. GO:1902182: shoot apical meristem development. TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Reproductive organ - Inflorescence,  Reproductive organ - Panicle, Mode of branching,  Seed - Physiological traits - Shattering	Os05g0455200	LOC_Os05g38120.1				GO:0010492 - maintenance of shoot apical meristem identity, GO:0009809 - lignin biosynthetic process, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010081 - regulation of inflorescence meristem growth, GO:0010065 - primary meristem tissue development, GO:0003677 - DNA binding, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0080006 - internode patterning, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010073 - meristem maintenance, GO:0010014 - meristem initiation, GO:0010229 - inflorescence development, GO:0009755 - hormone-mediated signaling, GO:0048507 - meristem development, GO:0010432 - bract development	TO:0006014 - phyllotaxy, TO:0000396 - grain yield, TO:0000733 - lignin biosynthesis trait, TO:0000142 - secondary branching of inflorescence, TO:0002759 - grain number, TO:0000547 - primary branch number, TO:0000456 - spikelet number, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000473 - grain shattering, TO:0000557 - secondary branch number, TO:0006020 - shoot apical meristem development, TO:0000052 - primary branching of inflorescence, TO:0000621 - inflorescence development trait	PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0001083 - inflorescence development stage , PO:0025034 - leaf , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0000230 - inflorescence meristem , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0006327 - spikelet meristem 
6819	SH6	SH6	SHATTERING 6				5		 Seed - Physiological traits - Shattering								
6820	TR1	TR1	TINY RICE 1				8		 Seed - Morphological traits - Grain shape						GO:0007275 - multicellular organismal development		
6821	TS	TS	TEMPERATURE SENSITIVE				1		 Tolerance and resistance - Stress tolerance						GO:0009266 - response to temperature stimulus		
6823	TS1	TS1	TWISTED STEM 1				1		 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6824	TS2	TS2	TWISTED STEM 2				1		 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6825	GRH6	Grh6	GREEN RICE LEAFHOPPER RESISTANCE 6	Green rice leafhopper resistance-6			4	PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0061477			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
6826	MAPK2	OsMAPK2, MPK2, OsMPK2	MITOGEN-ACTIVATED PROTEIN KINASE 2	Mitogen-activated protein kinase 2, MAP kinase 2	MITOGEN-ACTIVATED PROTEIN KINASE 2		8	EC=2.7.11.24 Q5J4W4.	 Biochemical character	Os08g0157000	LOC_Os08g06060.1				GO:0004707 - MAP kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004713 - protein tyrosine kinase activity		
6827	MAPK4	OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7	MITOGEN-ACTIVATED PROTEIN KINASE 4	Mitogen-activated protein kinase 4, MAP kinase 4, Multiple stress-responsive MAP kinase 3	MITOGEN-ACTIVATED PROTEIN KINASE 4	mapk7, mpk7	6	EC=2.7.11.24 Q5Z859. AF216316. AJ512642. AJ251330. OsMPK7 in Zhao et al. 2014, Jalmi and Sinha 2016, Mao et al. 2024. MAPK7 in Mao et al. 2019. PO:0030123: panicle inflorescence. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0699400	LOC_Os06g48590.2, LOC_Os06g48590.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0042742 - defense response to bacterium, GO:2000033 - regulation of seed dormancy, GO:0002213 - defense response to insect, GO:0009814 - defense response, incompatible interaction, GO:0009611 - response to wounding, GO:0009737 - response to abscisic acid stimulus, GO:0006950 - response to stress, GO:0006468 - protein amino acid phosphorylation, GO:0009751 - response to salicylic acid stimulus, GO:0005524 - ATP binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009411 - response to UV, GO:0042542 - response to hydrogen peroxide, GO:0004707 - MAP kinase activity	TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0000424 - brown planthopper resistance, TO:0000253 - seed dormancy, TO:0000173 - ethylene sensitivity	PO:0009049 - inflorescence , PO:0009006 - shoot system 
6828	MAPK3	OsMAPK3	MITOGEN-ACTIVATED PROTEIN KINASE 3		MITOGEN-ACTIVATED PROTEIN KINASE 3				 Biochemical character						GO:0005524 - ATP binding, GO:0004707 - MAP kinase activity, GO:0006468 - protein amino acid phosphorylation		
6840	PITQ5	Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5	PYRICULARIA ORYZAE RESISTANCE TQ 5	Magnaporthe grisea resistance from Teqing, Blast resistance tq5			2	PO:0009025; leaf. Original line is Tequing (Indica). 150.5-157.9 cM.	 Tolerance and resistance - Disease resistance			GR:0060664			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
6841	PIX	Pi-x(t), Pi-x1	PYRICULARIA ORYZAE RESISTANCE X	Magnaporthe grisea resistance, Blast resistance			2		 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
6850	ACS2	OsACS2, Os-ACS2	ACC SYNTHASE 2	ACC synthase 2, 1-aminocyclopropane-1-carboxylic acid synthase 2	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2		4	U65701. TO:0020102: phosphate content. GO:1904585: response to putrescine.	 Tolerance and resistance - Insect resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os04g0578000	LOC_Os04g48850.1				GO:0009734 - auxin mediated signaling pathway, GO:0009611 - response to wounding, GO:0009733 - response to auxin stimulus, GO:0009620 - response to fungus, GO:0010446 - response to alkalinity, GO:0051607 - defense response to virus, GO:0009753 - response to jasmonic acid stimulus, GO:0042594 - response to starvation, GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0009814 - defense response, incompatible interaction, GO:0008631 - induction of apoptosis by oxidative stress, GO:0009612 - response to mechanical stimulus, GO:0009723 - response to ethylene stimulus, GO:0046687 - response to chromate, GO:0046689 - response to mercury ion, GO:0009693 - ethylene biosynthetic process, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0031349 - positive regulation of defense response	TO:0000576 - stem length, TO:0000481 - alkali sensitivity, TO:0000148 - viral disease resistance, TO:0000163 - auxin sensitivity, TO:0000424 - brown planthopper resistance, TO:0000034 - chromium sensitivity, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0001012 - lateral root length, TO:0000227 - root length	PO:0009005 - root , PO:0009006 - shoot system 
6851	ACS4	OsACS4, OS-ACS4	ACC SYNTHASE 4	ACC synthase 4, 1-aminocyclopropane-1-carboxylic acid synthase 4	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4		5	U65703.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0319200	LOC_Os05g25490.1				GO:0009058 - biosynthetic process, GO:0009693 - ethylene biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0003824 - catalytic activity, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity		PO:0009006 - shoot system , PO:0009005 - root 
6852	ACS5	OsACS5, OS-ACS5, OsBphi008a	ACC SYNTHASE 5	ACC synthase 5, 1-aminocyclopropane-1-carboxylic acid synthase 5	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 5		1	U65704.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0192900	LOC_Os01g09700.1				GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0003824 - catalytic activity, GO:0010446 - response to alkalinity, GO:0009058 - biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0009693 - ethylene biosynthetic process	TO:0000481 - alkali sensitivity	PO:0009006 - shoot system , PO:0009005 - root 
6853	ALDH1A	ALDH1A	ALDEHYDE DEHYDROGENASE	aldehyde dehydrogenase	ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6854	ALDH2B	OsALDH2B	ALDEHYDE DEHYDROGENASE 2B	aldehyde dehydrogenase 2B	ALDEHYDE DEHYDROGENASE 2B			Rice ALDH2a and ALDH2b genes are orthologues of maize mitochondrial ALDH genes, rf2b and rf2a, respectively (Tsuji et al. 2003).	 Tolerance and resistance - Stress tolerance,  Biochemical character						GO:0030912 - response to deep water, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors	TO:0000286 - submergence sensitivity	
6855	RF2D	RF2D	ALDEHYDE DEHYDROGENASE		ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6856	ALDH1	ALDH1	ALDEHYDE DEHYDROGENASE	aldehyde dehydrogenase	ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6857	ALDH	ALDH	ALDEHYDE DEHYDROGENASE	aldehyde dehydrogenase	ALDEHYDE DEHYDROGENASE				 Biochemical character						GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors		
6858	AMY3D	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3, OsRamy3D	ALPHA-AMYLASE 3D	Alpha-amylase3D, Alpha-amylase isozyme 3D precursor, Alpha-amylase isozyme 3D, Alpha-amylase-3D, Amylase-8	ALPHA-AMYLASE 3D		8	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. M59351. P27933. M24287. AU166291, AU166292, AU068387, AU166535.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Physiological traits - Dormancy,  Character as QTL - Yield and productivity	Os08g0473900	LOC_Os08g36910.3, LOC_Os08g36910.2, LOC_Os08g36910.1	GR:0060047			GO:0009723 - response to ethylene stimulus, GO:0001666 - response to hypoxia, GO:0009413 - response to flooding, GO:0009408 - response to heat, GO:0045927 - positive regulation of growth, GO:0033500 - carbohydrate homeostasis, GO:0009409 - response to cold, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005987 - sucrose catabolic process, GO:0005983 - starch catabolic process, GO:0005509 - calcium ion binding, GO:0004556 - alpha-amylase activity, GO:0009873 - ethylene mediated signaling pathway	TO:0000173 - ethylene sensitivity, TO:0000432 - temperature response trait, TO:0000168 - abiotic stress trait, TO:0000253 - seed dormancy, TO:0000449 - grain yield per plant, TO:0000303 - cold tolerance, TO:0000280 - seedling vigor, TO:0000259 - heat tolerance, TO:0000114 - flooding related trait, TO:0000015 - oxygen sensitivity	
6859	AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4, OsAmy3E, OsRamy3E	ALPHA-AMYLASE 3E	Alpha-amylase3E, Alpha-amylase isozyme 3E precursor, Alpha-amylase isozyme 3E, Alpha-amylase-3E, Amylase-9, Alpha-amylase-3D	ALPHA-AMYLASE 3E		8	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. M59352. P27934. AMY1.4 in Wang et al. 2021. OsAmy3C in Farooq et al. 2022. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Character as QTL - Germination,  Character as QTL - Grain quality,  Seed - Physiological traits - Longevity,  Vegetative organ - Culm,  Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os08g0473600	LOC_Os08g36900.1, LOC_Os08g36900.2	GR:0061336			GO:0009408 - response to heat, GO:0009845 - seed germination, GO:0005509 - calcium ion binding, GO:0010182 - sugar mediated signaling, GO:0005975 - carbohydrate metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0010212 - response to ionizing radiation, GO:0009651 - response to salt stress, GO:0005983 - starch catabolic process, GO:0005987 - sucrose catabolic process, GO:0051775 - response to redox state, GO:0009739 - response to gibberellin stimulus, GO:0001666 - response to hypoxia, GO:0080006 - internode patterning, GO:0009409 - response to cold, GO:0004556 - alpha-amylase activity, GO:0009270 - response to humidity	TO:0000015 - oxygen sensitivity, TO:0000441 - humidity related trait, TO:0000166 - gibberellic acid sensitivity, TO:0000345 - seed viability, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000544 - mesocotyl length, TO:0000250 - vigor related trait, TO:0010001 - percent germination, TO:0000435 - seed longevity, TO:0000161 - radiation response trait, TO:0000259 - heat tolerance	PO:0007057 - 0 seed germination stage 
6860	AMY3A	Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129	ALPHA-AMYLASE 3A	Alpha-amylase3A, Alpha-amylase isozyme 3A precursor, Alpha-amylase isozyme 3A, Alpha-amylase-3A, Amylase-5, endosperm-specific gene 129	ALPHA-AMYLASE 3A		9	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. P27932. X56336.	 Biochemical character	Os09g0457400	LOC_Os09g28400.1	GR:0060046			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005987 - sucrose catabolic process, GO:0005983 - starch catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0005509 - calcium ion binding, GO:0004556 - alpha-amylase activity		
6861	AMY3B	Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C, OsRamy3B, OsAmy3C	ALPHA-AMYLASE 3B	Alpha-amylase3B, Alpha-amylase isozyme 3B precursor, Alpha-amylase isozyme 3B, Alpha-amylase-3B, Amylase-6, Alpha-amylase-3A	ALPHA-AMYLASE 3B		9	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. P27937. X56337. OsAmy3C in Liu et al. 2018, Huang et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0457600	LOC_Os09g28420.1	GR:0061334			GO:0009651 - response to salt stress, GO:0010212 - response to ionizing radiation, GO:0005983 - starch catabolic process, GO:0005987 - sucrose catabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009409 - response to cold, GO:0009739 - response to gibberellin stimulus, GO:0032940 - secretion by cell, GO:0005509 - calcium ion binding, GO:0005975 - carbohydrate metabolic process, GO:0004556 - alpha-amylase activity	TO:0000161 - radiation response trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	
6866	DGL1	DGL1	DWARF AND GLADIUS LEAF 1						 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
6883	RAD21	OsRad21, OsRAD21-1, REC8	RAD21 PROTEIN	Rad21 protein	RAD21 PROTEIN		1	ORTHOLOGUE OF YEAST REC8, Rad21/Rec8-like protein. AY288943. AF140489. REC8 in Yang et al. 2022.	 Biochemical character	Os01g0897800 	LOC_Os01g67250.1, LOC_Os01g67250.2				GO:0000228 - nuclear chromosome		
6884	RAD21-2	OsRad21-2	RAD21-2 PROTEIN	Rad21-2 protein	RAD21-2 PROTEIN		4	ORTHOLOGUE OF YEAST REC8. Rad21/Rec8-like protein, similar to Rad21/Rec8 cohesin subunit. AY371047.	 Biochemical character	Os04g0488100	LOC_Os04g41110.1, LOC_Os04g41110.2				GO:0000228 - nuclear chromosome		
6885	RAD21-3	OsRad21-3	RAD21-3 PROTEIN	Rad21-3 protein	RAD21-3 PROTEIN		8	ORTHOLOGUE OF YEAST REC8. AY371048. Rad21/Rec8-like protein.	 Reproductive organ,  Biochemical character	Os08g0266700	LOC_Os08g16610.1				GO:0000228 - nuclear chromosome		PO:0000084 - plant sperm cell 
6886	RAD21-4	OsRad21-4, REC8, OsREC8, OsRAD21-4	RAD21-4 PROTEIN	Rad21-4 protein, RECombination 8	RAD21-4 PROTEIN	Osrec8, Osrec8-1, Osrec8-2	5	ORTHOLOGUE OF YEAST REC8. AY371049. Rad21/Rec8-like protein. MiMe (Mitosis instead of Meiosis) mutants was generated by editing the OsOSD1 (Os02g37850), PAIR1 (Os03g01590), and OsREC8 (Os05g50410) genes. 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0580500	LOC_Os05g50410.2, LOC_Os05g50410.1				GO:0000798 - nuclear cohesin complex, GO:0007062 - sister chromatid cohesion, GO:0006302 - double-strand break repair, GO:0003682 - chromatin binding, GO:0000228 - nuclear chromosome		
6887	SPL1	OsSPL1, DLN8, OsDLN8, DLN8a, DLN8b, OsDLN8a, OsDLN8b	RICE SQUAMOSA PROMOTER-BINDING-LIKE 1	Squamosa promoter-binding-like protein 1, DLN repressor 8, DLN motif protein 8	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 1		1	Q9LGU7.	 Other	Os01g0292900	LOC_Os01g18850.4, LOC_Os01g18850.3, LOC_Os01g18850.2, LOC_Os01g18850.1				GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription, GO:0005634 - nucleus, GO:0003677 - DNA binding		
6888	SPL2	OsSPL2	RICE SQUAMOSA PROMOTER-BINDING-LIKE 2	Squamosa promoter-binding-like protein 2	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2		1	Q0JGI1.	 Other	Os01g0922600	LOC_Os01g69830.1				GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0045449 - regulation of transcription		
6889	SPL4	OsSPL4	RICE SQUAMOSA PROMOTER-BINDING-LIKE 4	Squamosa promoter-binding-like protein 4	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	spl4-d3, spl4-d15, osspl4, osspl4-1, osspl4-2	2	Q6H509. HQ858810. PRJNA773224. SBP transcription factor. TO:0000975: grain width.	 Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Other	Os02g0174100	LOC_Os02g07780.2, LOC_Os02g07780.1				GO:0006350 - transcription, GO:0048316 - seed development, GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0051302 - regulation of cell division, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding	TO:0000605 - hydrogen peroxide content, TO:0000734 - grain length, TO:0000621 - inflorescence development trait, TO:0002759 - grain number, TO:0000653 - seed development trait, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0000455 - seed set percent, TO:0000456 - spikelet number, TO:0000590 - grain weight, TO:0000052 - primary branching of inflorescence, TO:0000447 - filled grain number, TO:0000142 - secondary branching of inflorescence, TO:0000050 - inflorescence branching, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000612 - seed density, TO:0000399 - grain thickness, TO:0000074 - blast disease	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
6890	SPL7	OsSPL7	RICE SQUAMOSA PROMOTER-BINDING-LIKE 7	Squamosa promoter-binding-like protein 7	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7	spl7, spl7-1	4	Q01JD1(indica), Q7XT42(japonica). OsSPL7 is a target of miR156f. TO: inflorescence axis length. TO:0001061: inflorescence axis thickness. TO:0001063: panicle inflorescence internode length. TO:0001062: number of panicle internodes.	 Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Other,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Reproductive organ - Panicle, Mode of branching	Os04g0551500	LOC_Os04g46580.1				GO:0009740 - gibberellic acid mediated signaling, GO:0008270 - zinc ion binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0045449 - regulation of transcription, GO:0005634 - nucleus	TO:0000329 - tillering ability, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0002637 - leaf size, TO:0000621 - inflorescence development trait, TO:0000050 - inflorescence branching, TO:0000175 - bacterial blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000371 - yield trait	PO:0001083 - inflorescence development stage , PO:0025487 - bract primordium , PO:0025034 - leaf 
6891	LG1	SPL8, OsSPL8, OsLG1	LIGULELESS 1	Squamosa promoter-binding-like protein 8, Protein LIGULELESS 1, OsLIGULELESS1	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8	lg1, oslg1, oslg1-1, oslg1-2	4	Q01KM7(indica), Q7XPY1(japonica). AB776991(O. sativa),  AB776992(O. rufipogon W630). TO:0000847: panicle anatomy and morphology trait.	 Vegetative organ - Leaf,  Other,  Reproductive organ - Inflorescence	Os04g0656500	LOC_Os04g56170.1				GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription	TO:0000206 - leaf angle, TO:0000655 - leaf development trait	PO:0006012 - leaf collar 
6892	SPL9	OsSPL9	RICE SQUAMOSA PROMOTER-BINDING-LIKE 9	Squamosa promoter-binding-like protein 9	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 9	osspl9	5	Q6I576.	 Other,  Tolerance and resistance - Stress tolerance	Os05g0408200	LOC_Os05g33810.1				GO:0005634 - nucleus, GO:0055070 - copper ion homeostasis, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0045449 - regulation of transcription, GO:0006350 - transcription	TO:0000276 - drought tolerance	
6893	SST	OsSPL10, SPL10, OsSST, SST/OsSPL10	SEEDLING SALT TOLERANT	Squamosa promoter-binding-like protein 10, seedling salt tolerant	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 10	sst	6	A2YFT9(indica), Q0DAE8(japonica). The SST activity affects rice rhizosphere microbiome assembly. (Lian et al. 2020)	 Other,  Tolerance and resistance - Stress tolerance	Os06g0659100	LOC_Os06g44860.1				GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0006350 - transcription	TO:0000513 - potassium concentration, TO:0000609 - potassium content, TO:0000526 - sodium concentration, TO:0000608 - sodium content, TO:0006001 - salt tolerance	
6894	SPL11	OsSPL11	RICE SQUAMOSA PROMOTER-BINDING-LIKE 11	Squamosa promoter-binding-like protein 11	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 11		6	Q653Z5.	 Other	Os06g0663500	LOC_Os06g45310.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0005634 - nucleus		
6895	SPL12	OsSPL12, DLN176, OsDLN176	RICE SQUAMOSA PROMOTER-BINDING-LIKE 12	Squamosa promoter-binding-like protein 12, SQUAMOSA Promoter-Binding Protein-Like 12a, DLN repressor 176, DLN motif protein 176	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 12		6	A2YGR5. GO:2000280: regulation of root development. OsmiR156 target gene.	 Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Root	Os06g0703500	LOC_Os06g49010.3, LOC_Os06g49010.2, LOC_Os06g49010.1, LOC_Os06g49010.4, LOC_Os06g49010.5, LOC_Os06g49010.6				GO:0008270 - zinc ion binding, GO:0006350 - transcription, GO:0048364 - root development, GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0007623 - circadian rhythm, GO:0009266 - response to temperature stimulus, GO:0010378 - temperature compensation of the circadian clock, GO:0003677 - DNA binding	TO:0000432 - temperature response trait, TO:0000656 - root development trait	PO:0007520 - root development stage 
6896	GLW7 	OsSPL13, SPL13, OsGLW7	GRAIN LENGTH AND WEIGHT ON CHROMOSOME 7 	Squamosa promoter-binding-like protein 13, RICE SQUAMOSA PROMOTER-BINDING-LIKE 13, GRAIN LENGTH AND WIEIGHT ON CHROMOSOME 7	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 13	glw7	7	Q6Z461. KT899581, KT899582, LT159866-LT159966.	 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Seed - Morphological traits - Grain shape,  Other	Os07g0505200	LOC_Os07g32170.2, LOC_Os07g32170.1				GO:0008270 - zinc ion binding, GO:0010050 - vegetative phase change, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0030307 - positive regulation of cell growth	TO:0000357 - growth and development trait, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000396 - grain yield	
6899	SPL15	OsSPL15, DLN215, OsDLN215	RICE SQUAMOSA PROMOTER-BINDING-LIKE 15	Squamosa promoter-binding-like protein 15, DLN repressor 215, DLN motif protein 215	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 15		8	A2YX04(indica), Q6Z8M8(japonica).	 Other	Os08g0513700	LOC_Os08g40260.1				GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
6900	GW8	SPL16, OsSPL16, SLP1, OsSLP1, qGW8, OsGW8	GRAIN-WIDTH 8	RICE SQUAMOSA PROMOTER-BINDING-LIKE 16, Squamosa promoter-binding-like protein 16, SQUAMOSA promoter-binding-like 16, stunted lemma palea 1, grain-width 8	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 16	slp1, gw8, GW8HJX74, gw8Basmati, GW8-A, GW8-B	8	Q6YZE8. an SBP-domain transcription factor.  TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Vegetative organ - Culm	Os08g0531600	LOC_Os08g41940.1				GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding, GO:0008284 - positive regulation of cell proliferation, GO:0008270 - zinc ion binding, GO:0006350 - transcription	TO:0000734 - grain length, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0002661 - seed maturation, TO:0000397 - grain size, TO:0000402 - grain width, TO:0002731 - grain length to width ratio, TO:0002730 - grain shape	
6901	WAK1	OsWAK1, WAK-1	WALL-ASSOCIATED KINASE GENE 1	Wall-Associated kinase 1	WALL-ASSOCIATED KINASE 1		1	AU030772.	 Biochemical character	Os01g0136400	LOC_Os01g04409.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane		
6902	WAK2	OsWAK2	WALL-ASSOCIATED KINASE GENE 2	Wall-Associated kinase 2	WALL-ASSOCIATED KINASE 2		1		 Biochemical character	Os01g0136800	LOC_Os01g04450.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005886 - plasma membrane		
6903	WAK3	OsWAK3	WALL-ASSOCIATED KINASE GENE 3		WALL-ASSOCIATED KINASE 3		1	pseudo gene.	 Biochemical character								
6904	WAK4	OsWAK4, OsRLCK32, RLCK32	WALL-ASSOCIATED KINASE GENE 4	Receptor-like Cytoplasmic Kinase 32	WALL-ASSOCIATED KINASE 4		1	LOC_Os01g20900.	 Tolerance and resistance - Disease resistance,  Seed,  Biochemical character	Os01g0310800	LOC_Os01g20900.1, LOC_Os01g20900.2, LOC_Os01g20900.3, LOC_Os01g20900.4, LOC_Os01g20900.5, LOC_Os01g20900.6, LOC_Os01g20900.7				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
6905	CRD1	CRD1/OsHST, OsCRD1, OsHST, HST	CROWN ROOT DEFECT 1	crown root defect 1, Exportin-5, HASTY, OsHASTY		crd1, crd1HJ2, crd1XS134, crd193-11	1	AU100894, C27886. an Xpo1 domain protein. the rice ortholog of Arabidopsis HASTY (HST) and human exportin-5 (XPO5). WAK5 in Butt et al. 2021.	 Biochemical character,  Vegetative organ - Root	Os01g0363900	LOC_Os01g26160.2, LOC_Os01g26160.1				GO:0048364 - root development, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0010015 - root morphogenesis, GO:0048830 - adventitious root development	TO:0000656 - root development trait	PO:0020121 - lateral root , PO:0007520 - root development stage , PO:0005029 - root primordium , PO:0025480 - shoot-borne root primordium , PO:0009005 - root , PO:0009047 - stem , PO:0008039 - stem base , PO:0025034 - leaf , PO:0009046 - flower , PO:0020127 - primary root , PO:0000043 - crown root , PO:0000025 - root tip 
6906	WAK6	OsWAK6	WALL-ASSOCIATED KINASE GENE 6		WALL-ASSOCIATED KINASE 6		1	pseudo gene.	 Biochemical character								
6908	WAK7/8	OsWAK7/8, OsWAK7, OsWAK8	WALL-ASSOCIATED KINASE GENE 7/8		WALL-ASSOCIATED KINASE 7/8		1	C24950. OsWAK7 was merged with OsWAK8.	 Biochemical character	Os01g0364800	LOC_Os01g26270.1, LOC_Os01g26280.1				GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6909	WAK9	OsWAK9	WALL-ASSOCIATED KINASE GENE 9		WALL-ASSOCIATED KINASE 9		1	pseudo gene.	 Biochemical character								
6910	WAK10	OsWAK10	WALL-ASSOCIATED KINASE GENE 10		WALL-ASSOCIATED KINASE 10		1	AU082462, C22642, AU174609, D48660, AU174608, AU181399.	 Biochemical character	Os01g0689900	LOC_Os01g49529.1, LOC_Os01g49529.2, LOC_Os01g49529.3, LOC_Os01g49529.4				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6911	WAK11	OsWAK11	WALL-ASSOCIATED KINASE GENE 11		WALL-ASSOCIATED KINASE 11		2	D22099.	 Biochemical character	Os02g0111600	LOC_Os02g02120.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6912	WAK14	OsWAK14	WALL-ASSOCIATED KINASE GENE 14		WALL-ASSOCIATED KINASE 14	wak14-1, wak14-2	2	GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0632800	LOC_Os02g42150.2, LOC_Os02g42150.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0010200 - response to chitin	TO:0000074 - blast disease	
6913	WAK15	OsWAK15, OsRLCK76, RLCK76	WALL-ASSOCIATED KINASE GENE 15	Receptor-like Cytoplasmic Kinase 76	WALL-ASSOCIATED KINASE 15		2	LOC_Os02g42160.	 Biochemical character	Os02g0632900	LOC_Os02g42160.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6914	WAK16	OsWAK16, OsRLCK77, RLCK77	WALL-ASSOCIATED KINASE GENE 16	Receptor-like Cytoplasmic Kinase 77	WALL-ASSOCIATED KINASE 16		2	LOC_Os02g42190.	 Biochemical character	Os02g0633066	LOC_Os02g42190.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
6915	WAK17	OsWAK17	WALL-ASSOCIATED KINASE GENE 17		WALL-ASSOCIATED KINASE 17		2	OJ1111_E07.2	 Biochemical character	Os02g0699824	LOC_Os02g47160.1				GO:0016021 - integral to membrane		
6916	WAK18	OsWAK18	WALL-ASSOCIATED KINASE GENE 18		WALL-ASSOCIATED KINASE 18		2		 Biochemical character	Os02g0807200 					GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
6920	WAK19	OsWAK19	WALL-ASSOCIATED KINASE GENE 19		WALL-ASSOCIATED KINASE 19		2	LOC_Os02g56350.	 Biochemical character		LOC_Os02g56350				GO:0016301 - kinase activity		
6921	WAK20	OsWAK20	WALL-ASSOCIATED KINASE GENE 20		WALL-ASSOCIATED KINASE 20		2		 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0807800	LOC_Os02g56370.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6922	WAK21	OsWAK21	WALL-ASSOCIATED KINASE GENE 21		WALL-ASSOCIATED KINASE 21		2		 Biochemical character	Os02g0807900	LOC_Os02g56380.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6923	WAK22	OsWAK22	WALL-ASSOCIATED KINASE GENE 22		WALL-ASSOCIATED KINASE 22		2		 Biochemical character	Os02g0808100	LOC_Os02g56400.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation		
6924	WAK23	OsWAK23	WALL-ASSOCIATED KINASE GENE 23		WALL-ASSOCIATED KINASE 23		2	CA760609.	 Biochemical character	Os02g0808300	LOC_Os02g56420.1				GO:0016301 - kinase activity, GO:0030247 - polysaccharide binding		
6925	WAK24	OsWAK24	WALL-ASSOCIATED KINASE GENE 24		WALL-ASSOCIATED KINASE 24		2		 Biochemical character	Os02g0811200	LOC_Os02g56630.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
6926	WAK25	OsWAK25	WALL-ASSOCIATED KINASE GENE 25	Wall-Associated Kinase 25	WALL-ASSOCIATED KINASE 25		3	CB640326.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Biochemical character	Os03g0225700	LOC_Os03g12470.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0000356 - brown spot disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0000401 - plant growth hormone sensitivity, TO:0000063 - mimic response	
6927	WAK27	OsWAK27, OsRLCK114, RLCK114	WALL-ASSOCIATED KINASE GENE 27	Receptor-like Cytoplasmic Kinase 114	WALL-ASSOCIATED KINASE 27		3		 Biochemical character	Os03g0642600	LOC_Os03g44050.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation		
6928	WAK28	OsWAK28	WALL-ASSOCIATED KINASE GENE 28		WALL-ASSOCIATED KINASE 28		3	CB631820.	 Biochemical character	Os03g0841100	LOC_Os03g62430.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6929	WAK29	OsWAK29	WALL-ASSOCIATED KINASE GENE 29		WALL-ASSOCIATED KINASE 29		4		 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0127500	LOC_Os04g03830.1				GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006952 - defense response, GO:0005524 - ATP binding	TO:0000112 - disease resistance	
6930	WAK30/31	OsWAK30, OsWAK30/OsWAK31, OsWAK31	WALL-ASSOCIATED KINASE GENE 30/31		WALL-ASSOCIATED KINASE 30/31		4	OsWAK30 was merged with OsWAK31. 	 Biochemical character	Os04g0220300	LOC_Os04g14304.1				GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6932	WAK32	OsWAK32	WALL-ASSOCIATED KINASE GENE 32		WALL-ASSOCIATED KINASE 32		4	LOC_Os04g24220.3 CB676084.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0307500	LOC_Os04g24220.1, LOC_Os04g24220.2, LOC_Os04g24220.3				GO:0051607 - defense response to virus, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	
6933	WAK34	OsWAK34	WALL-ASSOCIATED KINASE GENE 34		WALL-ASSOCIATED KINASE 34		4		 Biochemical character		LOC_Os04g21790.1				GO:0004672 - protein kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
6934	WAK33	OsWAK33	WALL-ASSOCIATED KINASE GENE 33		WALL-ASSOCIATED KINASE 33		4		 Biochemical character	Os04g0286300	LOC_Os04g21820.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6935	WAK35	OsWAK35	WALL-ASSOCIATED KINASE GENE 35		WALL-ASSOCIATED KINASE 35		4	CF322435.	 Biochemical character	Os04g0308000	LOC_Os04g24294.1, LOC_Os04g24294.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6936	WAK36	OsWAK36, OsRLCK140, RLCK140	WALL-ASSOCIATED KINASE GENE 36	Receptor-like Cytoplasmic Kinase 140	WALL-ASSOCIATED KINASE 36		4	LOC_Os04g24510.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0310400	LOC_Os04g24510.1				GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance	
6937	WAK38	OsWAK38	WALL-ASSOCIATED KINASE GENE 38		WALL-ASSOCIATED KINASE 38		4	CB632726. OSJNBa0081G05.15	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0366000	LOC_Os04g29680.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding	TO:0000276 - drought tolerance	
6938	WAK41	OsWAK41	WALL-ASSOCIATED KINASE GENE 41		WALL-ASSOCIATED KINASE 41		4	OSJNBa0016N04.2	 Biochemical character	Os04g0367201	LOC_Os04g29880.1				GO:0030247 - polysaccharide binding		
6939	WAK43	OsWAK43	WALL-ASSOCIATED KINASE GENE 43		WALL-ASSOCIATED KINASE 43		4	CA763211.	 Biochemical character	Os04g0368000 	LOC_Os04g29960.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding		
6940	WAK44	OsWAK44, OsRLCK142, RLCK142	WALL-ASSOCIATED KINASE GENE 44	Receptor-like Cytoplasmic Kinase 142	WALL-ASSOCIATED KINASE 44		4	OSJNBa0016N04.12	 Biochemical character	Os04g0368300	LOC_Os04g29990.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding		
6941	WAK45	OsWAK45, OsRLCK143, RLCK143	WALL-ASSOCIATED KINASE GENE 45	Receptor-like Cytoplasmic Kinase 143	WALL-ASSOCIATED KINASE 45		4	CB628328, CB668831. LOC_Os04g30010.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Seed,  Reproductive organ - panicle	Os04g0368800 	LOC_Os04g30010.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0009010 - seed 
6942	WAK46	OsWAK46, OsWAK2-L, WAK2-L, OsWAK2L, WAK2L	WALL-ASSOCIATED KINASE GENE 46	OsWAK2-like	WALL-ASSOCIATED KINASE 46		4	OsWAK2-L in Wen et al. 2023.  GO:0038187: pattern recognition receptor activity. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:0098542: defense response to other organism.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os04g0370100	LOC_Os04g30160.1				GO:0006952 - defense response, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding	TO:0000179 - biotic stress trait, TO:0000112 - disease resistance	
6943	WAK47	OsWAK47, OsRLCK147, RLCK147	WALL-ASSOCIATED KINASE GENE 47	Receptor-like Cytoplasmic Kinase 147	WALL-ASSOCIATED KINASE 47		4		 Biochemical character	Os04g0371100	LOC_Os04g30260.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6944	WAK48	OsWAK48	WALL-ASSOCIATED KINASE GENE 48		WALL-ASSOCIATED KINASE 48		4		 Biochemical character	Os04g0371275	LOC_Os04g30280.1				GO:0030247 - polysaccharide binding		
6945	WAK49	OsWAK49	WALL-ASSOCIATED KINASE GENE 49		WALL-ASSOCIATED KINASE 49		4		 Biochemical character	Os04g0372100	LOC_Os04g30370.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6946	WAK51	OsWAK51	WALL-ASSOCIATED KINASE GENE 51		WALL-ASSOCIATED KINASE 51		4		 Biochemical character	Os04g0517700	LOC_Os04g43730.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
6947	WAK52	OsWAK52	WALL-ASSOCIATED KINASE GENE 52		WALL-ASSOCIATED KINASE 52		4	OSJNba0093F12.18	 Biochemical character	Os04g0598500	LOC_Os04g51009.2, LOC_Os04g51009.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
6948	WAK53	OsWAK53, OsWAK53a	WALL-ASSOCIATED KINASE GENE 53		WALL-ASSOCIATED KINASE 53		4		 Biochemical character	Os04g0599000	LOC_Os04g51050.1, LOC_Os04g51050.2				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6949	WAK54	OsWAK54	WALL-ASSOCIATED KINASE GENE 54		WALL-ASSOCIATED KINASE 54		4	OSJNBb0059K02.18	 Biochemical character	Os04g0651200	LOC_Os04g55750.1				GO:0030247 - polysaccharide binding		
6950	WAK55	OsWAK55	WALL-ASSOCIATED KINASE GENE 55		WALL-ASSOCIATED KINASE 55		4	LOC_Os04g55760. targeted by OS_AGO1_sRNA87 (Qin et al. 2017).	 Biochemical character	Os04g0651500	LOC_Os04g55760.1				GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6951	WAK61	OsWAK61, OsRLCK195, RLCK195	WALL-ASSOCIATED KINASE GENE 61	Receptor-like Cytoplasmic Kinase 195	WALL-ASSOCIATED KINASE 61		6	CA755270. P0535G04.24	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0142500	LOC_Os06g05050.1				GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
6952	WAK62	OsWAK62, GOS9	WALL-ASSOCIATED KINASE GENE 62		WALL-ASSOCIATED KINASE 62		6	OSJNBa0033B09.26. a root-specific rice gene. X51909. A2WMH2, P0C5C6.	 Biochemical character	Os06g0169100	LOC_Os06g07260.1				GO:0030246 - carbohydrate binding, GO:0016301 - kinase activity		
6953	WAK63	OsWAK63	WALL-ASSOCIATED KINASE GENE 63		WALL-ASSOCIATED KINASE 63		6		 Biochemical character	Os06g0170100	LOC_Os06g07330.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6954	WAK64	OsWAK64	WALL-ASSOCIATED KINASE GENE 64		WALL-ASSOCIATED KINASE 64		6		 Biochemical character	Os06g0705200	LOC_Os06g49170.1				GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6955	WAK65	OsWAK65	WALL-ASSOCIATED KINASE GENE 65		WALL-ASSOCIATED KINASE 65		6		 Biochemical character	Os06g0706600	LOC_Os06g49260.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
6956	WAK66	OsWAK66, OsRLCK224, RLCK224	WALL-ASSOCIATED KINASE GENE 66	Receptor-like Cytoplasmic Kinase 224	WALL-ASSOCIATED KINASE 66		7	pseudo gene.	 Biochemical character	Os07g0169300	LOC_Os07g07390.1				GO:0016020 - membrane, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
6957	WAK67	OsWAK67	WALL-ASSOCIATED KINASE GENE 67		WALL-ASSOCIATED KINASE 67		7	pseudo gene.	 Biochemical character	Os07g0248500	LOC_Os07g14470.1				GO:0030247 - polysaccharide binding		
6958	WAK68	OsWAK68, OsRLCK225, RLCK225	WALL-ASSOCIATED KINASE GENE 68	Receptor-like Cytoplasmic Kinase 225	WALL-ASSOCIATED KINASE 68		7	pseudo gene.	 Biochemical character	Os07g0248600	LOC_Os07g14490.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
6959	WAK69	OsWAK69, OsRLCK231, RLCK231	WALL-ASSOCIATED KINASE GENE 69	Receptor-like Cytoplasmic Kinase 231	WALL-ASSOCIATED KINASE 69		7		 Biochemical character	Os07g0494800	LOC_Os07g31250.1				GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		
6960	WAK70	OsWAK70, OsRLCK230, RLCK230	WALL-ASSOCIATED KINASE GENE 70	Receptor-like Cytoplasmic Kinase 230	WALL-ASSOCIATED KINASE 70		7	LOC_Os07g31210.	 Biochemical character	Os07g0494300	LOC_Os07g31210.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6961	WAK71	OsWAK71, OsRLCK229, RLCK229	WALL-ASSOCIATED KINASE GENE 71	Receptor-like Cytoplasmic Kinase 229	WALL-ASSOCIATED KINASE 71		7	LOC_Os07g31190.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0493800 	LOC_Os07g31190.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0004713 - protein tyrosine kinase activity, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease	
6962	WAK72	OsWAK72, OsRLCK228, RLCK228	WALL-ASSOCIATED KINASE GENE 72	Receptor-like Cytoplasmic Kinase 228	WALL-ASSOCIATED KINASE 72		7	CA756443. LOC_Os07g31130.	 Biochemical character	Os07g0493200	LOC_Os07g31130.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
6963	WAK73	OsWAK73	WALL-ASSOCIATED KINASE GENE 73		WALL-ASSOCIATED KINASE 73		8		 Biochemical character	Os08g0501200	LOC_Os08g39174.1, LOC_Os08g39180.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
6964	WAK74	OsWAK74	WALL-ASSOCIATED KINASE GENE 74		WALL-ASSOCIATED KINASE 74		8	CA763126. OJ1345_D02.15	 Biochemical character	Os08g0501500	LOC_Os08g39210.1				GO:0006468 - protein amino acid phosphorylation, GO:0005509 - calcium ion binding, GO:0009609 - response to symbiotic bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0007166 - cell surface receptor linked signal transduction, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		PO:0009005 - root 
6965	WAK75	OsWAK75	WALL-ASSOCIATED KINASE GENE 75		WALL-ASSOCIATED KINASE 75		8	OJ1345_D02.17	 Biochemical character	Os08g0501600	LOC_Os08g39220.1				GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
6966	WAK76	OsWAK76	WALL-ASSOCIATED KINASE GENE 76		WALL-ASSOCIATED KINASE 76		8	CB677466, CB628072.	 Biochemical character	Os08g0501700	LOC_Os08g39240.1, LOC_Os08g39240.2				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6967	WAK77	OsWAK77, OsRLCK252, RLCK252	WALL-ASSOCIATED KINASE GENE 77	Receptor-like Cytoplasmic Kinase 252	WALL-ASSOCIATED KINASE 77		8	LOC_Os08g27780.	 Biochemical character,  Reproductive organ - panicle	Os08g0365500	LOC_Os08g27780.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
6968	WAK78	OsWAK78	WALL-ASSOCIATED KINASE GENE 78		WALL-ASSOCIATED KINASE 78		8	OJ1484_G09.127	 Biochemical character	Os08g0365800	LOC_Os08g27810.1				GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0016301 - kinase activity, GO:0030247 - polysaccharide binding		
6969	WAK79	OsWAK79	WALL-ASSOCIATED KINASE GENE 79		WALL-ASSOCIATED KINASE 79		9		 Biochemical character	Os09g0373800	LOC_Os09g20740.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
6970	WAK80	OsWAK80	WALL-ASSOCIATED KINASE GENE 80		WALL-ASSOCIATED KINASE 80		9	pseudo gene.	 Biochemical character	Os09g0471200	LOC_Os09g29510.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity		
6971	WAK81	OsWAK81, OsRLCK273, RLCK273	WALL-ASSOCIATED KINASE GENE 81	Receptor-like Cytoplasmic Kinase 273	WALL-ASSOCIATED KINASE 81		9	LOC_Os09g29520.	 Biochemical character	Os09g0471400	LOC_Os09g29520.1				GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
6972	WAK82	OsWAK82, OsRLCK274, RLCK274	WALL-ASSOCIATED KINASE GENE 82	Receptor-like Cytoplasmic Kinase 274	WALL-ASSOCIATED KINASE 82		9	AU055937, AU032343. LOC_Os09g29540.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0471500	LOC_Os09g29540.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0009607 - response to biotic stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000179 - biotic stress trait, TO:0000236 - crop damage resistance	
6973	WAK83	OsWAK83	WALL-ASSOCIATED KINASE GENE 83		WALL-ASSOCIATED KINASE 83		9	pseudo gene.	 Biochemical character	Os09g0471550	LOC_Os09g29560.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane		
6974	WAK84	OsWAK84	WALL-ASSOCIATED KINASE GENE 84		WALL-ASSOCIATED KINASE 84		9		 Biochemical character	Os09g0471600	LOC_Os09g29584.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
6975	WAK85	OsWAK85, YK10	WALL-ASSOCIATED KINASE GENE 85		WALL-ASSOCIATED KINASE 85		9	AF230499. target of Osa-miR396.	 Biochemical character	Os09g0471800	LOC_Os09g29600.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
6976	WAK86	OsWAK86	WALL-ASSOCIATED KINASE GENE 86		WALL-ASSOCIATED KINASE 86		9	pseudo gene.	 Biochemical character	Os09g0339300	LOC_Os09g16980.1				GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding		
6977	WAK88	OsWAK88	WALL-ASSOCIATED KINASE GENE 88		WALL-ASSOCIATED KINASE 88		9	pseudo gene.	 Biochemical character								
6979	WAK89A	OsWAK89a	WALL-ASSOCIATED KINASE GENE 89A		WALL-ASSOCIATED KINASE 89A		9		 Biochemical character	Os09g0561400	LOC_Os09g38830.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding		
6980	WAK89B	OsWAK89b	WALL-ASSOCIATED KINASE GENE 89B		WALL-ASSOCIATED KINASE 89B		9		 Biochemical character	Os09g0561450	LOC_Os09g38834.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
6981	WAK90	OsWAK90	WALL-ASSOCIATED KINASE GENE 90		WALL-ASSOCIATED KINASE 90		9		 Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0561500	LOC_Os09g38840.1				GO:0005524 - ATP binding, GO:0010200 - response to chitin, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
6982	DEES1	WAK91, OsWAK91, OsDEES1	DEFECT IN EARLY EMBRYO SAC1	WALL-ASSOCIATED KINASE GENE 91	WALL-ASSOCIATED KINASE 91		9	GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Embryo	Os09g0561600	LOC_Os09g38850.1				GO:0050832 - defense response to fungus, GO:0010200 - response to chitin, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process	TO:0000074 - blast disease	
6983	WAK92	OsWAK92, OsDEES1-L4	WALL-ASSOCIATED KINASE GENE 92		WALL-ASSOCIATED KINASE 92		9	OsDEES1 homolog. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0562600	LOC_Os09g38910.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010200 - response to chitin, GO:0005509 - calcium ion binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
6984	WAK105	OsWAK105, YK3	WALL-ASSOCIATED KINASE GENE 105		WALL-ASSOCIATED KINASE 105		10	AF230502.	 Biochemical character	Os10g0152000	LOC_Os10g06140.1				GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding		
6985	WAK122	OsWAK122	WALL-ASSOCIATED KINASE GENE 122		WALL-ASSOCIATED KINASE 122		11		 Biochemical character	Os11g0694200	LOC_Os11g47150.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
6986	WAK123	OsWAK123	WALL-ASSOCIATED KINASE GENE 123		WALL-ASSOCIATED KINASE 123		11		 Biochemical character	Os11g0694100	LOC_Os11g47140.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
7055	GAD3	OsGAD3	GLUTAMATE DECARBOXYLASE	glutamate decarboxylase 3	GLUTAMATE DECARBOXYLASE		3	AY187941.	 Seed - Physiological traits - Taste,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0236200	LOC_Os03g13300.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006536 - glutamate metabolic process, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0046686 - response to cadmium ion, GO:0030170 - pyridoxal phosphate binding, GO:0004351 - glutamate decarboxylase activity	TO:0000087 - aroma, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
7056	PHS8	ISA1, OsISA1, ISA, OsISA, PHS8/ISA1, OsPHS8, ISA I, OsISA I, ISAI, OsISAI	PRE-HARVEST SPROUTING 8	isoamylase 1, isoamylase1, sugary-1, pre-harvest sprouting 8	ISOAMYLASE 1	sugary1, isa1, sug-1, phs8, phs8-1	8	AB015615, AB093426. OsISA1 was strongly expressed in developing endosperm at the early milking stage, whereas it was present at lower expression levels in green leaves. HQ678910-HQ679078 (O. sativa and other wild rice species). GQ150881. The starch mutant sugary contains reduced activities of isoamylase1 (ISA1) (Kawagoe et al. 2005). The sugary-h (sug-h) mutant phenotype was controlled by a complementary interaction of two recessive genes, Isoamylase1 (OsISA1) and Starch branching enzyme IIa (OsBEIIa) (Lee et al. 2017). The sugary endosperm phenotype could be caused by a point mutation on OsISA1, which was shared by both sug-1 and sug-h mutants (Lee et al. 2017). TO:0000975: grain width. GO:1901698: response to nitrogen compound. 	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm,  Biochemical character	Os08g0520900	LOC_Os08g40930.1				GO:0019252 - starch biosynthetic process, GO:0010581 - regulation of starch biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0009960 - endosperm development, GO:0009738 - abscisic acid mediated signaling, GO:0010029 - regulation of seed germination, GO:0019156 - isoamylase activity, GO:0005980 - glycogen catabolic process, GO:0043169 - cation binding, GO:0009269 - response to desiccation, GO:0010231 - maintenance of seed dormancy, GO:0048623 - seed germination on parent plant	TO:0000399 - grain thickness, TO:0000394 - drought related trait, TO:0000734 - grain length, TO:0002658 - starch grain synthesis, TO:0000099 - sugary endosperm, TO:0000615 - abscisic acid sensitivity, TO:0000011 - nitrogen sensitivity	PO:0007632 - seed maturation stage , PO:0007633 - endosperm development stage 
7058	PGWC8	pgwc8	PERCENTAGE OF GRAINS WITH CHALKINESS				8	high PGWC was controlled by a single recessive gene, pgwc8. the pgwc8 gene was mapped between SSR markers RM477 and RM447.	 Seed - Physiological traits						GO:0007275 - multicellular organismal development		
7063	RIRE3	RIRE3	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB014738, AB014739.	 Other						GO:0032196 - transposition		
7064	RIRE3B	RIRE3B	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7065	RIRE2	RIRE2, Osr26, Rire2, Retrosat2	GYPSY TYPE RETROTRANSPOSON	gypsy-type retrotransposon, LTR retrotransposon Osr26, RIRE2 element			5	AB030283, AB032021. AP001111: 59274-70587. AF111709. RIRE2 is a gypsy-like long terminal repeat retrotransposon with significant sequence similarity to Dasheng.	 Other						GO:0032196 - transposition		
7066	RIRE4	RIRE4	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7067	RIRE5	RIRE5	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7068	RIRE6	RIRE6	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
7069	RIRE7	RIRE7, Osr31, Rire7	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr31			1	AP003054: 102778-110180.	 Other						GO:0032196 - transposition		
7070	RIRE8	RIRE8, Osr33, Rire8	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr33				AP002864: 35539-47557 (chromosome 6). AB014740, AB014742.	 Other						GO:0032196 - transposition		
7071	RIRE8A	RIRE8A	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB014740.	 Other						GO:0032196 - transposition		
7072	RIRE8B	RIRE8B	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB014741.	 Other						GO:0032196 - transposition		
7073	RMU2	RMU2	MUTATOR 2						 Other						GO:0006280 - mutagenesis, GO:0032196 - transposition		
7074	qSS5	qSS5															
7075	SALT1	SALT1	SALT TOLERANCE 1						 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress		
7076	SST1	SST1	SPIKELET SEMI-STERILE						 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
7100	CCR1	OsCCR1	CINNAMOYL-COA REDUCTASE 1	OsCINNAMOYL-COENZYME A REDUCTASE1, CINNAMOYL-COENZYME A REDUCTASE 1, CINNAMOYL-CoA REDUCTASE 1	CINNAMOYL-COA REDUCTASE 1		2	Q6K9A2.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0808800 	LOC_Os02g56460.1				GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0009809 - lignin biosynthetic process, GO:0003824 - catalytic activity, GO:0050832 - defense response to fungus, GO:0050662 - coenzyme binding, GO:0016621 - cinnamoyl-CoA reductase activity, GO:0009409 - response to cold	TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000303 - cold tolerance	
7102	18S  rRNA	rrn18	18S RIBOSOMAL RNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D38480. BA000029 (Nipponbare complete mitochondrial genome). AB763988, AB763990.	 Biochemical character			GR:0100180			GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
7103	25S rRNA	25S rRNA	25S RIBOSOMAL RNA	25S RIBOSOMAL RNA				AK119809.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
7105	UBC	UBC, OsUBC32, UBC32	UBIQUITIN CONJUGATING ENZYME E2	Ubiquitin conjugating enzyme E2, Ubiquitin-conjugating enzyme 32	UBIQUITIN CONJUGATING ENZYME E2		2	LOC_Os02g42314. OsUBC32 in Zhang et al. 2015.	 Biochemical character	Os02g0634800	LOC_Os02g42314.1, LOC_Os02g42314.2				GO:0016881 - acid-amino acid ligase activity, GO:0009737 - response to abscisic acid stimulus, GO:0031371 - ubiquitin conjugating enzyme complex, GO:0006635 - fatty acid beta-oxidation, GO:0005622 - intracellular, GO:0016558 - protein import into peroxisome matrix, GO:0004842 - ubiquitin-protein ligase activity	TO:0000615 - abscisic acid sensitivity	
7107	UBQ5	RUB2, OsRUB2, NEDD8	UBIQUITIN 5	Ubiquitin 5, Ubiquitin, NEDD8-like protein RUB2, Ubiquitin-related protein 2	UBIQUITIN 5		6	P69321(japonica), P0C031(japonica).	 Biochemical character	Os06g0650100	LOC_Os06g44080.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm		
7109	EEF1A	eEF-1alpha	EUKARYOTIC ELONGATION FACTOR 1-ALPHA		EUKARYOTIC ELONGATION FACTOR 1-ALPHA				 Biochemical character						GO:0005853 - eukaryotic translation elongation factor 1 complex		
7111	CATB	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2	CATALASE B	Catalase B, Catalase isozyme B	CATALASE B	CR-catb, catb, oscatb	6	A2YH64(indica), Q0D9C4(japonica). D26484. D64013. EC=1.11.1.6 GO:0072593: reactive oxygen species metabolic process.	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0727200	LOC_Os06g51150.2, LOC_Os06g51150.1				GO:0009409 - response to cold, GO:0009514 - glyoxysome, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0020037 - heme binding, GO:0048366 - leaf development, GO:0009735 - response to cytokinin stimulus, GO:0005829 - cytosol, GO:0042744 - hydrogen peroxide catabolic process, GO:0055114 - oxidation reduction, GO:0050777 - negative regulation of immune response, GO:0005777 - peroxisome, GO:0006979 - response to oxidative stress, GO:0031348 - negative regulation of defense response, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0004096 - catalase activity	TO:0006001 - salt tolerance, TO:0002681 - leaf curling, TO:0000085 - leaf rolling, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0000655 - leaf development trait, TO:0000112 - disease resistance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000167 - cytokinin sensitivity, TO:0000421 - pollen fertility	PO:0009066 - anther , PO:0025034 - leaf , PO:0001050 - leaf development stage 
7113	ADC1	OsADC1, ARGDC, ADC, OsAdc1	ARGININE DECARBODYLASE	Arginine decarboxylase, Arginine decarboxylase 1	ARGININE DECARBODYLASE		6	EU220429. AY604047.Q9SNN0.  EC=4.1.1.19 GO:0080167: response to karrikin. GO:0097501: stress response to metal ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0131300	LOC_Os06g04070.1				GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0000287 - magnesium ion binding, GO:0006527 - arginine catabolic process, GO:0006596 - polyamine biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0010038 - response to metal ion, GO:0006979 - response to oxidative stress, GO:0008792 - arginine decarboxylase activity, GO:0009409 - response to cold, GO:0009446 - putrescine biosynthetic process, GO:0009611 - response to wounding, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0002657 - oxidative stress, TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
7114	CEBIP	CEBiP, Os-LYP1, LYP1, OsCEBiP	CHITIN ELICITOR BINDING PROTEIN	Chitin elicitor-binding protein, chitin-elicitor binding protein, lysin motif-containing protein 1, chitin oligosaccharide elicitor-binding protein	CHITIN ELICITOR BINDING PROTEIN	Oscebip, oscebip, cebip, oscebip-1, oscerk1-2	3	Q8H8C7. a chitin receptor. a lysine motif (LysM) receptor-like protein (RLP). PDB: 5JCD, 5JCE. GO:0140426: PAMP-triggered immunity signalling pathway. GO:0038187: pattern recognition receptor activity. GO:0036377: arbuscular mycorrhizal association. GO:1900150: regulation of defense response to fungus. GO:2000023: regulation of lateral root development.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root	Os03g0133400	LOC_Os03g04110.2, LOC_Os03g04110.1				GO:0002237 - response to molecule of bacterial origin, GO:0006952 - defense response, GO:0048527 - lateral root development, GO:0050832 - defense response to fungus, GO:0009266 - response to temperature stimulus, GO:0008061 - chitin binding, GO:0016998 - cell wall macromolecule catabolic process, GO:0010200 - response to chitin, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0002238 - response to molecule of fungal origin, GO:0019722 - calcium-mediated signaling, GO:0016021 - integral to membrane, GO:0032491 - detection of molecule of fungal origin, GO:0009753 - response to jasmonic acid stimulus, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium	TO:0001013 - lateral root number, TO:0000432 - temperature response trait, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000439 - fungal disease resistance, TO:0000112 - disease resistance	
7115	SUB1A	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A	SUBMERGENCE 1A	submergence-1A		Sub1A-1, Sub1A-2, Sub1A-3, SUB1A1, SUB1A2, SUB1A-1, SUB1A-2	9	DQ011598b. Sub1A is absent from all japonica and some indica accessions, all of which are intolerant to submergence. FR720457-FR720461 (O. nivara and O. rufipogon). a group VII ethylene response factor (ERFVII). Sub1A was absent from Ob and Og accessions (Shang et al. 2022). GO:0036377: arbuscular mycorrhizal association.	 Tolerance and resistance - Stress tolerance						GO:0009610 - response to symbiotic fungus, GO:0003700 - transcription factor activity, GO:0009723 - response to ethylene stimulus, GO:0009413 - response to flooding, GO:0009873 - ethylene mediated signaling pathway, GO:0003677 - DNA binding, GO:0001666 - response to hypoxia, GO:0030912 - response to deep water, GO:0005634 - nucleus	TO:0000114 - flooding related trait, TO:0000173 - ethylene sensitivity, TO:0000286 - submergence sensitivity, TO:0000524 - submergence tolerance	
7118	SUB1B	Sub1B, OsSUB1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166	SUBMERGENCE 1B	submergence-1B, ethylene response factor 63, APETALA2/ethylene-responsive element binding protein 166		Sub1B-1, Sub1B-2	9	AP005705. EU429442: OnSub1B-1 (Oryza nivara Sub1B-1), EU429443: OnSub1B-2 (Oryza nivara Sub1B-2), EU429444: OrSub1B-1 (Oryza rufipogon Sub1B-1). a group VII ethylene response factor (ERFVII).	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os09g0287000	LOC_Os09g11480.1, LOC_Os09g11480.2				GO:0005634 - nucleus, GO:0009413 - response to flooding, GO:0001666 - response to hypoxia, GO:0003700 - transcription factor activity, GO:0009723 - response to ethylene stimulus, GO:0009266 - response to temperature stimulus, GO:0030912 - response to deep water, GO:0009845 - seed germination, GO:0009629 - response to gravity, GO:0003677 - DNA binding	TO:0000173 - ethylene sensitivity, TO:0000432 - temperature response trait, TO:0002693 - gravity response trait, TO:0000524 - submergence tolerance	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
7119	SUB1C	Sub1C, OsSUB1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122, SUB1B	SUBMERGENCE 1C	submergence-1C, ethylene response factor 73, APETALA2/ethylene-responsive element binding protein 122		Sub1C-1, Sub1C-2	9	AP006758. EU429445: OnSub1C-1 (Oryza nivara Sub1C-1), EU429446: OrSub1C-1 (Oryza rufipogon Sub1C-1). HM117839: OrhSub1C-1-L (O. rhizomatis SUB1C-1-Like), FR720463-FR720467: OeSub1C-1-L (alleles: OeSUB1C-1-L1, OeSUB1C-1-L2, OeSUB1C-1-L3, OeSUB1C-1-L4, OeSUB1C-1-L5) (O. eichingeri SUB1C-1-Like). a group VII ethylene response factor (ERFVII). SUB1B in Hao et al. 2024.	 Tolerance and resistance - Stress tolerance	Os09g0286600 	LOC_Os09g11460.1, LOC_Os09g11460.2				GO:0003700 - transcription factor activity, GO:0034059 - response to anoxia, GO:0009413 - response to flooding, GO:0005634 - nucleus, GO:0001666 - response to hypoxia, GO:0009723 - response to ethylene stimulus, GO:0030912 - response to deep water, GO:0003677 - DNA binding	TO:0000015 - oxygen sensitivity, TO:0000524 - submergence tolerance, TO:0000173 - ethylene sensitivity	
7121	ACX1	OsACX1	ACYL-COA OXIDASE 1	acyl-CoA oxidase 1	ACYL-COA OXIDASE 1		6	GO:0071949: FAD binding.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0103500	LOC_Os06g01390.1				GO:0003995 - acyl-CoA dehydrogenase activity, GO:0005777 - peroxisome, GO:0033539 - fatty acid beta-oxidation using acyl-CoA dehydrogenase, GO:0050660 - FAD binding, GO:0009611 - response to wounding, GO:0003997 - acyl-CoA oxidase activity		PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root 
7122	ACX2	OsACX2	ACYL-COA OXIDASE 2	acyl-CoA oxidase 2, acyl-coenzyme A oxidase 2	ACYL-COA OXIDASE 2		11	AU064119, AU101254. GO:0071949: FAD binding. ACX in Yang et al. 2018.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0605500	LOC_Os11g39220.2, LOC_Os11g39220.1				GO:0009414 - response to water deprivation, GO:0005777 - peroxisome, GO:0006635 - fatty acid beta-oxidation, GO:0009269 - response to desiccation, GO:0003997 - acyl-CoA oxidase activity, GO:0001676 - long-chain fatty acid metabolic process, GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors	TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance, TO:0000432 - temperature response trait	PO:0009010 - seed 
7123	ACX3	OsACX3, OsACOX3, ACOX3	ACYL-COA OXIDASE 3	acyl-CoA oxidase 3	ACYL-COA OXIDASE 3		6	GO:0071949: FAD binding.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os06g0354500	LOC_Os06g24704.1				GO:0033539 - fatty acid beta-oxidation using acyl-CoA dehydrogenase, GO:0005777 - peroxisome, GO:0003995 - acyl-CoA dehydrogenase activity, GO:0002213 - defense response to insect, GO:0009737 - response to abscisic acid stimulus, GO:0003997 - acyl-CoA oxidase activity, GO:0050660 - FAD binding	TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity	
7125	NBS1	OsNbs1	NIJIMEGEN BREAKAGE SYNDROME 1						 Tolerance and resistance - Stress tolerance						GO:0006310 - DNA recombination, GO:0006281 - DNA repair		
7130	ZFP182	ZFP182/ZOS3-21, ZOS3-21	ZINC FINGER PROTEIN 182		ZINC FINGER PROTEIN 182		3	AY286474. 	 Other,  Tolerance and resistance - Stress tolerance	Os03g0823000	LOC_Os03g60810.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
7133	SLRL2	OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30	SLENDER RICE LIKE 2	SLR1-like2, GRAS protein 30	GRAS PROTEIN 30	slrl2, slrl2-1, slrl2-2	5	TO:0001069: cooking quality trait. GO:1902040: positive regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Character as QTL - Germination,  Seed - Physiological traits - Taste,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Other	Os05g0574900	LOC_Os05g49930.1				GO:0009740 - gibberellic acid mediated signaling, GO:0048623 - seed germination on parent plant, GO:0009738 - abscisic acid mediated signaling, GO:0010162 - seed dormancy, GO:0009737 - response to abscisic acid stimulus, GO:0003677 - DNA binding, GO:0010029 - regulation of seed germination, GO:0010468 - regulation of gene expression, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0045449 - regulation of transcription	TO:0000207 - plant height, TO:0000412 - setback viscosity, TO:0000619 - vivipary, TO:0000211 - gel consistency, TO:0000615 - abscisic acid sensitivity, TO:0000196 - amylose content, TO:0002758 - flag leaf lamina width, TO:0000253 - seed dormancy, TO:0000162 - seed quality	
7135	SLRL1	OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1	SLENDER RICE LIKE 1	SLR1-like1, GRAS protein 1			1	DELLA subfamily gene OsGAI in Zhou et al. 2014. OsSLRL in Chen et al. 2015. AU094565. GO:2000022: regulation of jasmonic acid mediated signaling pathway. SLN1 (slender 1) in Wang et al. 2021. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Other	Os01g0646300	LOC_Os01g45860.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0045449 - regulation of transcription, GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0010468 - regulation of gene expression, GO:0009413 - response to flooding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009739 - response to gibberellin stimulus, GO:0009740 - gibberellic acid mediated signaling, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0080006 - internode patterning, GO:0006350 - transcription	TO:0000175 - bacterial blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000544 - mesocotyl length, TO:0000255 - sheath blight disease resistance, TO:0000286 - submergence sensitivity, TO:0000172 - jasmonic acid sensitivity	
7137	IPK	OsIpk	INOSITOL PHOSPHATE KINASE		INOSITOL PHOSPHATE KINASE				 Biochemical character						GO:0004428 - inositol or phosphatidylinositol kinase activity		
7139	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1	HEMOGLOBIN 1	Non-symbiotic hemoglobin 1, class 1 rice nonsymbiotic hemoglobin, class 1 nonsymbiotic hemoglobin, Non-legume hemoglobin, Phytogb1.1, phytoglobin 1.1	HEMOGLOBIN 1		3	O04986. D15507, D23324, U76029, U76030. AF335504. TO:0020098: nitrate sensitivity. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0233900	LOC_Os03g13140.2, LOC_Os03g13140.1				GO:0010167 - response to nitrate, GO:0080033 - response to nitrite, GO:0051592 - response to calcium ion, GO:0020037 - heme binding, GO:0019825 - oxygen binding, GO:0015671 - oxygen transport, GO:0006970 - response to osmotic stress, GO:0005886 - plasma membrane, GO:0005618 - cell wall, GO:0005829 - cytosol	TO:0000095 - osmotic response sensitivity, TO:0000008 - potassium sensitivity, TO:0000006 - calcium sensitivity	
7143	UGE1	OsUGE-1	UDP-GLUCOSE 4-EPIMERASE 1		UDP-GLUCOSE 4-EPIMERASE 1				 Biochemical character						GO:0003978 - UDP-glucose 4-epimerase activity		
7152	LFL1	OsLFL1, OsSTA29, STA29	LATE-FLOWERING 1	B3 domain-containing protein LFL1, LEC2 and FUSCA3-like protein 1, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 1, LEC2/FUS3-LIKE 1	LEC2 AND FUSCA3-LIKE PROTEIN 1		1	PUTATIVE B3 TRANSCRIPTION FACTOR. A4LBC0. EF521182. a mature anther-preferentially expressed gene. GO:1990110: callus formation.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date	Os01g0713600	LOC_Os01g51610.1				GO:0005634 - nucleus, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0003700 - transcription factor activity, GO:0009908 - flower development, GO:0048573 - photoperiodism, flowering, GO:0010843 - promoter binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000428 - callus induction, TO:0000622 - flower development trait	PO:0009066 - anther , PO:0007615 - flower development stage 
7153	CDKA1;1	CDKA1;1	CYCLIN-DEPENDENT KINASE A1;1		CYCLIN-DEPENDENT KINASE A1;1				 Biochemical character						GO:0004693 - cyclin-dependent protein kinase activity		
7154	CYCD5;3	CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3, OsCYCD5;3	D-TYPE CYCLIN 5;3	Cyclin-D5-3, G1/S-specific cyclin-D5-3	D-TYPE CYCLIN 5;3		3	Q10QA2.	 Biochemical character	Os03g0203800	LOC_Os03g10650.1				GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0045840 - positive regulation of mitosis, GO:0051301 - cell division		PO:0009010 - seed , PO:0009051 - spikelet , PO:0007631 - plant embryo stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root , PO:0007633 - endosperm development stage 
7155	EL2	Orysa; EL2	D-TYPE CYCLIN-INTERACTING PROTEIN		D-TYPE CYCLIN-INTERACTING PROTEIN	Orysa;el2	3	Os03g01740. D-type cyclin-interacting protein. plant CDK inhibitor. A potent biotic elicitor for phytoalexin biosysthesis. D64038.	 Biochemical character	Os03g0107700	LOC_Os03g01740.1				GO:0051726 - regulation of cell cycle		
7156	LSI2	Lsi2, SIET1, OsLsi2, OsSIET1	LOW SILICON RICE 2	low silicon 2, silicon efflux transporter 1, Si efflux transporter 1, Si/arsenite efflux transporter Lsi2	SILICON EFFLUX TRANSPORTER 1	lsi2, OsLsi2-1, OsLsi2-2, OsLsi2-3, cr-OsLsi2, cr-OsLsi2-1	3	AB222273. PO:0005772; exodermis ; PO:0009006; shoot ; PO:0000252; endodermis. GRO:0007045; 09-mature grain stage TO:0006054: arsenic concentration. ArsB/NhaD permease (arsenite efflux). TO:0001048: silicon content trait. TO:1000026: root system arsenic content. TO:0020089: iron content trait. TO:0020090: zinc content trait. TO:0006059: cadmium content trait. TO:0001044: cobalt content trait. TO:0006051: nickel content. TO:0001045: chromium content trait. TO:0006054: arsenic content trait.	 Tolerance and resistance - Insect resistance,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0107300	LOC_Os03g01700.1	GR:0080037			GO:0048830 - adventitious root development, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0006810 - transport, GO:0046688 - response to copper ion, GO:0032523 - silicon efflux transmembrane transporter activity, GO:0048226 - Casparian strip, GO:0048831 - regulation of shoot development, GO:0009609 - response to symbiotic bacterium, GO:0009408 - response to heat, GO:0034021 - response to silicon dioxide, GO:0010035 - response to inorganic substance, GO:0042594 - response to starvation, GO:0046685 - response to arsenic	TO:0000396 - grain yield, TO:0000007 - sulfur sensitivity, TO:0000333 - sugar content, TO:0000021 - copper sensitivity, TO:0000163 - auxin sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0020091 - manganese content, TO:0000031 - silicon sensitivity	PO:0009006 - shoot system , PO:0005772 - exodermis , PO:0000252 - endodermis , PO:0009005 - root 
7159	MUTM1	MutM1, Fpg	MUTM PROTEIN 1	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	MUTM PROTEIN 1		6		 Biochemical character						GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity		
7160	BZR1	OsBZR1, Os BZR1, OsBES1-6, BES1-6	BRASSINAZOLE RESISTANT 1	BRASSINAZOLE-RESISTANT1, BRI1-EMSSUPPRESSOR1-6, BRI1-EMSSUPPRESSOR 1-6		Osbzr1, cr-osbzr1, Osbzr1-D, bzr1-D, Osbzr1-T	7	the closest ortholog of BZR1 and BES1. OsMIR396d Is a Direct Target of OsBZR1 (Tang et al. 2018). GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1902347: response to strigolactone. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. GO:1900150: regulation of defense response to fungus. 	 Reproductive organ - panicle,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Germination,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os07g0580500	LOC_Os07g39220.1				GO:0009755 - hormone-mediated signaling, GO:0050832 - defense response to fungus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005773 - vacuole, GO:0009742 - brassinosteroid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0031349 - positive regulation of defense response, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009741 - response to brassinosteroid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0016020 - membrane, GO:0052315 - phytoalexin biosynthetic process, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0080006 - internode patterning, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0051607 - defense response to virus, GO:0005737 - cytoplasm, GO:0031347 - regulation of defense response, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0009716 - flavonoid phytoalexin biosynthetic process, GO:0009409 - response to cold, GO:0040008 - regulation of growth, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000544 - mesocotyl length, TO:0000102 - phosphorus sensitivity, TO:0006001 - salt tolerance, TO:0000040 - panicle length, TO:0000074 - blast disease, TO:0000020 - black streak dwarf virus resistance, TO:0000615 - abscisic acid sensitivity, TO:0000357 - growth and development trait, TO:0000346 - tiller number, TO:0000734 - grain length, TO:0000397 - grain size, TO:0002688 - leaf lamina joint bending, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000329 - tillering ability, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000303 - cold tolerance, TO:0000206 - leaf angle	PO:0025034 - leaf , PO:0000034 - vascular system , PO:0000055 - bud , PO:0007616 - flowering stage , PO:0007073 - 2 formation of axillary shoot stage , PO:0007089 - stem elongation stage , PO:0007014 - booting stage , PO:0007010 - whole plant fruit ripening stage , PO:0007042 - whole plant fruit formation stage , PO:0007041 - inflorescence emergence stage 
7163	CHL	OsCHL	CHLOROPHYLL A DEGRADING ENZYME	Chlorophyllase, Chlase	CHLOROPHYLLASE		10		 Biochemical character	Os10g0419600	LOC_Os10g28370.1	GR:0101292			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009536 - plastid, GO:0047746 - chlorophyllase activity, GO:0003824 - catalytic activity		
7166	APX1	OsAPX1, APXa, OsAPXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX, APX2, cAPXa, OscAPXa	ASCORBATE PEROXIDASE 1	"\"L-ascorbate peroxidase 1, cytosolic\", Ascorbate peroxidase, cytosolic Ascorbate Peroxidase, ascorbate peroxidase 1, ascorbate peroxidase a"	ASCORBATE PEROXIDASE 1		3	EC=1.11.1.11 A2XFC7(indica). Q10N21(japonica). B7E6Z4. D45423. C28227. AY254495. BAA08264. C25998, AU092225. PMDBID: PM0078091. BGIOSGA012374. GO:0072593: reactive oxygen species metabolic process. GO:0071588: hydrogen peroxide mediated signaling pathway. APX2 in Zhou et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0285700	LOC_Os03g17690.1, LOC_Os03g17690.2	GR:0061471			GO:0005509 - calcium ion binding, GO:0046688 - response to copper ion, GO:0042744 - hydrogen peroxide catabolic process, GO:0009751 - response to salicylic acid stimulus, GO:0046685 - response to arsenic, GO:0055114 - oxidation reduction, GO:0030955 - potassium ion binding, GO:0016688 - L-ascorbate peroxidase activity, GO:0006001 - fructose catabolic process, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009742 - brassinosteroid mediated signaling, GO:0005737 - cytoplasm, GO:0010332 - response to gamma radiation, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0051775 - response to redox state, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0070482 - response to oxygen levels, GO:0009735 - response to cytokinin stimulus, GO:0005829 - cytosol, GO:0009609 - response to symbiotic bacterium, GO:0050832 - defense response to fungus	TO:0000015 - oxygen sensitivity, TO:0000432 - temperature response trait, TO:0000167 - cytokinin sensitivity, TO:0000168 - abiotic stress trait, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0002677 - brassinosteroid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	PO:0000003 - whole plant , PO:0009006 - shoot system 
7167	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1	L-ASCORBATE PEROXIDASE 2	"\"L-ascorbate peroxidase 2, cytosolic\", ascorbate peroxidase 2, ascorbate peroxidase b"	L-ASCORBATE PEROXIDASE 2	Osapx2	7	KC626128-KC626136 (O. sativa and wild rice species, partial cds). D25238. Q9FE01. AB053297. BAA20889. AB050724. EC=1.11.1.11 Cytosolic Ascorbate Peroxidase. cAPX in Zhang et al. 2014. OsAPX1 in Huang et al. 2018, Gu et al. 2022. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0694700	LOC_Os07g49400.1, LOC_Os07g49400.4, LOC_Os07g49400.3, LOC_Os07g49400.2				GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding, GO:0016688 - L-ascorbate peroxidase activity, GO:0009725 - response to hormone stimulus, GO:0042742 - defense response to bacterium, GO:0009742 - brassinosteroid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0010446 - response to alkalinity, GO:0030955 - potassium ion binding, GO:0070482 - response to oxygen levels, GO:0005829 - cytosol, GO:0020037 - heme binding, GO:0055114 - oxidation reduction, GO:0009408 - response to heat, GO:0010332 - response to gamma radiation, GO:0005737 - cytoplasm, GO:0046688 - response to copper ion, GO:0009414 - response to water deprivation, GO:0009845 - seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0006979 - response to oxidative stress, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0009409 - response to cold, GO:0046685 - response to arsenic, GO:0006801 - superoxide metabolic process, GO:0042744 - hydrogen peroxide catabolic process, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000015 - oxygen sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000276 - drought tolerance, TO:0000481 - alkali sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000021 - copper sensitivity	PO:0009006 - shoot system , PO:0007057 - 0 seed germination stage 
7170	MAS	OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1, OsSDR110C-MS1, OsMS1, MS1	MOMILACTONE A SYNTHASE	Momilactone A synthase 1, Momilactone A synthase	MOMILACTONE A SYNTHASE		4	Q7FAE1. EC=1.1.1.295 momilactone biosynthetic pathway. GO:0140426: PAMP-triggered immunity signalling pathway. GO:0102960: momilactone-A synthase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0179200	LOC_Os04g10010.1	GR:0101313			GO:0016491 - oxidoreductase activity, GO:0050832 - defense response to fungus, GO:0052315 - phytoalexin biosynthetic process, GO:0016102 - diterpenoid biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0055114 - oxidation reduction, GO:0009536 - plastid, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0051504 - diterpene phytoalexin precursor biosynthetic process pathway, GO:0009628 - response to abiotic stimulus, GO:0008152 - metabolic process, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0005488 - binding, GO:0006952 - defense response	TO:0000160 - UV light sensitivity, TO:0002670 - momilactone A content, TO:0000439 - fungal disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0002669 - diterpenoid phytoalexin content, TO:0000172 - jasmonic acid sensitivity	
7171	CYP99A2	OsCYP99A2	P-450 99A2	Cytochrome P450 99A2	CYTOCHROME P450 99A2		4	EC=1.14.-.-, 1.14.14.1 cytochrome P450 monooxygenase, Cyt P450, Cytochrome P450. Q7X7X4. momilactone biosynthetic pathway.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0180400	LOC_Os04g10160.1	GR:0101315			GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0055114 - oxidation reduction, GO:0020037 - heme binding, GO:0009411 - response to UV, GO:0009055 - electron carrier activity, GO:0006952 - defense response, GO:0009628 - response to abiotic stimulus, GO:0004497 - monooxygenase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane, GO:0009536 - plastid	TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000160 - UV light sensitivity	
7172	CYP99A3	OsCYP99A3	P-450 99A3	Cytochrome P450 99A3	CYTOCHROME P450 99A3		4	EC=1.14.-.-, 1.14.14.1 cytochrome P450 monooxygenase, Cyt P450, Cytochrome P450. Q0JF01. momilactone biosynthetic pathway.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os04g0178400	LOC_Os04g09920.1	GR:0101314			GO:0009753 - response to jasmonic acid stimulus, GO:0016020 - membrane, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009411 - response to UV, GO:0006952 - defense response, GO:0042594 - response to starvation, GO:0031667 - response to nutrient levels, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0009409 - response to cold, GO:0022900 - electron transport chain, GO:0055114 - oxidation reduction, GO:0006995 - cellular response to nitrogen starvation, GO:0009536 - plastid, GO:0004497 - monooxygenase activity, GO:0016021 - integral to membrane, GO:0009628 - response to abiotic stimulus, GO:0009725 - response to hormone stimulus	TO:0002675 - gibberellic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000160 - UV light sensitivity, TO:0000207 - plant height, TO:0000112 - disease resistance, TO:0002669 - diterpenoid phytoalexin content, TO:0000011 - nitrogen sensitivity, TO:0000303 - cold tolerance	
7173	CRSH1	OsCRSH1	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 1	calcium activating hyperphosphorylated guanine synthetase 1, Calcium-activated (p)ppGpp Synthetase 1, chloroplastic (p)ppGpp synthetase 1, Ca2+-activated RelA-SpoT homolog 1	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 1		5	D48993, AB042936. Q6ATB4.	 Biochemical character	Os05g0161200	LOC_Os05g06890.1				GO:0008728 - GTP diphosphokinase activity, GO:0016301 - kinase activity, GO:0015969 - guanosine tetraphosphate metabolic process, GO:0009507 - chloroplast, GO:0005509 - calcium ion binding, GO:0005525 - GTP binding, GO:0005524 - ATP binding		
7174	CRSH2	OsCRSH2	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 2	calcium activating hyperphosphorylated guanine synthetase 2, Calcium-activated (p)ppGpp Synthetase 2, chloroplastic (p)ppGpp synthetase 2, Ca2+-activated RelA-SpoT homolog 2	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 2		5	Q6ATB2.	 Biochemical character	Os05g0161500	LOC_Os05g06920.1				GO:0005525 - GTP binding, GO:0016301 - kinase activity, GO:0015969 - guanosine tetraphosphate metabolic process, GO:0005509 - calcium ion binding, GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0008728 - GTP diphosphokinase activity		
7175	CRSH3	OsCRSH3	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 3	calcium activating hyperphosphorylated guanine synthetase 3, Calcium-activated (p)ppGpp Synthetase 3, chloroplastic (p)ppGpp synthetase 3, Ca2+-activated RelA-SpoT homolog 3	Ca2+-ACTIVATED RELA-SPOT HOMOLOG 3		5	AB298325. Q75IS2.	 Biochemical character	Os05g0161800	LOC_Os05g06940.1				GO:0015969 - guanosine tetraphosphate metabolic process, GO:0005509 - calcium ion binding, GO:0016301 - kinase activity, GO:0009507 - chloroplast, GO:0008728 - GTP diphosphokinase activity, GO:0005524 - ATP binding, GO:0005525 - GTP binding		
7177	ABI3	OsLFL2, LFL2, OsIDEF1, IDEF1, OsABI3	ABA INSENSITIVE 3	B3 domain-containing protein IDEF1, Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1, Transcription factor IDEF1, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2, IDE-binding factor 1, Iron Deficiency-responsive Element-binding Factor 1, iron deficiency-responsive cis-acting element binding factor 1	IDE-BINDING FACTOR 1		8	BR000654. Q6Z1Z3. PO:0009005; root ; PO:0009025; leaf. Positive transcriptional regulator. GO:1990641: response to iron ion starvation. TO:0020090: zinc content trait.	 Other,  Tolerance and resistance - Stress tolerance	Os08g0101000	LOC_Os08g01090.1, LOC_Os08g01090.2	GR:0080043			GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0045449 - regulation of transcription, GO:0009738 - abscisic acid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0010106 - cellular response to iron ion starvation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010843 - promoter binding	TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000495 - chlorophyll content, TO:0000224 - iron sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009025 - vascular leaf 
7181	CUTA1	OsCutA1	CU TOLERANCE A1	"\"Protein CutA 1, chloroplastic\""	CUTA1 PROTEIN		10	Q109R6.	 Tolerance and resistance - Stress tolerance	Os10g0378300	LOC_Os10g23204.1				GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0010038 - response to metal ion, GO:0070207 - protein homotrimerization		
7182	PEX11-1	OsPEX11-1, OsPEX11	PEROXIN 11-1	Peroxisomal membrane protein 11-1, Peroxin-11-1, peroxisomal biogenesis factor 11, peroxisomal biogenesis factor 11-1	PEROXIN 11-1		3	peroxisomal protein. Q10SM7. GO:1900425: negative regulation of defense response to bacterium. GO:0044375: regulation of peroxisome size.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0117100	LOC_Os03g02590.2, LOC_Os03g02590.3, LOC_Os03g02590.4				GO:0009651 - response to salt stress, GO:0005778 - peroxisomal membrane, GO:0016559 - peroxisome fission, GO:0016021 - integral to membrane	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	
7183	PEX11-2	OsPEX11-2, OsPEX11-5	PEROXIN 11-2	Peroxisomal membrane protein 11-2, Peroxin-11-2	PEROXIN 11-2		3	peroxisomal protein. Q10MN3.	 Biochemical character	Os03g0301950	LOC_Os03g18990.1, LOC_Os03g19000.1				GO:0005778 - peroxisomal membrane, GO:0016559 - peroxisome fission, GO:0016021 - integral to membrane		
7184	PEX11-3	OsPEX11-3, OsPEX11	PEROXIN 11-3	Peroxisomal membrane protein 11-3, Peroxin-11-3, peroxisomal biogenesis factor 11	PEROXIN 11-3		3	peroxisomal protein. A2XFQ8. Q10MN2. GO:0044375: regulation of peroxisome size. GO:1901002: positive regulation of response to salt stress. OsPEX11 in Cui et al. 2016.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0302000	LOC_Os03g19010.1				GO:0005778 - peroxisomal membrane, GO:0009651 - response to salt stress, GO:0005779 - integral to peroxisomal membrane, GO:0016559 - peroxisome fission, GO:0016021 - integral to membrane	TO:0000525 - sodium to potassium content ratio, TO:0006002 - proline content, TO:0006001 - salt tolerance	
7185	PEX11-4	OsPEX11-4	PEROXIN 11-4	Peroxisomal membrane protein 11-4, Peroxin-11-4	PEROXIN 11-4		4	peroxisomal protein. Q01IH3(indica), Q7XU74(japonica).	 Biochemical character	Os04g0534600	LOC_Os04g45210.1				GO:0016021 - integral to membrane, GO:0016559 - peroxisome fission, GO:0005778 - peroxisomal membrane		
7186	PEX11-5	OsPEX11-5	PEROXIN 11-5	Peroxisomal membrane protein 11-5, Peroxin-11-5	PEROXIN 11-5		6	peroxisomal protein. Q5VRJ8.	 Biochemical character	Os06g0127000	LOC_Os06g03660.1, LOC_Os06g03660.2				GO:0005778 - peroxisomal membrane, GO:0016559 - peroxisome fission, GO:0016021 - integral to membrane		
7188	DCL1	Dcl1, OsDCL1, osDCL1, Os-DCL1, OsDCL1a, DCL1a	DICER-LIKE 1	Dicer like 1, Dicer-like 1, Endoribonuclease Dicer homolog 1, Dicer-like protein 1	DICER-LIKE PROTEIN 1	osdcl1, Osdcl1a, Osdcl1a-Ac	3	EC=3.1.26.- Q8LMR2. KC610856-KC610864 (O. sativa and wild rice species, partial cds). targeted by miR162 (Qin et al. 2017). dcl1a-Ac mutants (M0066754, M0040827) from the Taiwan Rice Insertional Mutant collection (TRIM; http:/trim.sinica.edu.tw). Gene Expression Omnibus (GEO) repository accession: GSE109307. GO:0072593: reactive oxygen species metabolic process. GO:1902895: positive regulation of miRNA transcription.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0121800	LOC_Os03g02970.1	GR:0101251			GO:0004521 - endoribonuclease activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0003725 - double-stranded RNA binding, GO:0035197 - siRNA binding, GO:0007275 - multicellular organismal development, GO:0016442 - RNA-induced silencing complex, GO:0000287 - magnesium ion binding, GO:0030145 - manganese ion binding, GO:0050832 - defense response to fungus, GO:0004386 - helicase activity, GO:0031053 - primary microRNA processing, GO:0035195 - gene silencing by miRNA, GO:0035198 - miRNA binding, GO:0048830 - adventitious root development, GO:0048367 - shoot development, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0052315 - phytoalexin biosynthetic process, GO:0004525 - ribonuclease III activity	TO:0002670 - momilactone A content, TO:0000357 - growth and development trait, TO:0000326 - leaf color, TO:0000084 - root number, TO:0000085 - leaf rolling, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0002671 - momilactone B content, TO:0000207 - plant height	PO:0009049 - inflorescence 
7190	MIR169g	MIR-169g, osa-MIR169g	MICRORNA169G	micro RNA 169g			4	miRBase: MI0001122.LM379331	 Tolerance and resistance - Stress tolerance,  Other			GR:0100766			GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
7192	PING	Ping	PING ELEMENT	MITE Ping, MITE:Ping, Ping element				Transposable element (Mite), MINIATURE INVERTED REPEAT TRANSPOSABLE ELEMENT. EF441275. BK000587. AB087616.	 Other			GR:0061487			GO:0032196 - transposition		
7193	PONG	Pong	PONG ELEMENT	Pong element				MINIATURE INVERTED REPEAT TRANSPOSABLE ELEMENT, Transposable element (Mite). BK000586.	 Other			GR:0061488			GO:0032196 - transposition		
7194	MPING	mPing	MPING ELEMENT	Tourist mPing element, mPing element, miniature Ping				miniature inverted repeat transposable element, MITE, Transposable element (Mite). A sequence classified as a Tourist-like MITE of 430 base pairs, called miniature Ping (mPing), was present in about 70 copies in Nipponbare and in about 14 copies in 93-11 (Jiang et al. 2003). BK000588 (mPingA). AB087615. a MITE transposon.	 Other			GR:0061480			GO:0032196 - transposition		
7195	miR166	miR166	MICRORNA166						 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
7197	NDK3	Ndk3	NUCLEOSIDE DIPHOSPHATE KINASE 3		NUCLEOSIDE DIPHOSPHATE KINASE 3		5		 Biochemical character						GO:0004550 - nucleoside diphosphate kinase activity		
7199	PIGM	Pigm(t), Pi-gm(t), Pigm	PYRICULARIA ORYZAE RESISTANCE GM	Magnaporthe grisea resistance-gm, Blast resistance gm			6	Original line is Gumei4 (Indica). The allelism test showed that Pigm was allelic to Pi-2 and Pi-9, two known blast resistance genes (Deng el a. 2009).  The Pigm(t) locus between the markers C5843 and C0428 contains 6 candidate genes Os06g0286500, Os06g0286700, Os06g0287000, Os06g0287200, Os06g0287500 and LOC_Os06g17910(a pseudogene) (Deng et al. 2009). Pigm(t) is one of the NBS-LRR genes in the Pi2/Pi9 cluster on chromosome 6 (Zhu et al. 2012). The rice Pigm locus contains a cluster of genes encoding nucleotide-binding leucine-rich repeat (NLR) receptors that confer durable resistance to the fungus Magnaporthe oryzae without yield penalty. (Dang et al.2017)	 Tolerance and resistance - Disease resistance					65.8	GO:0009620 - response to fungus		
7200	PI35	Pi35(t)	PYRICULARIA ORYZAE RESISTANCE 35	Pyricularia grisea resistance 35, Magnaporthe grisea resistance 35, Blast resistance 35			1	Original line is Hokkai 188 (Japonica), Map position (132.0-136.0 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
7204	PGIP1	Ospgip1, pgip1, OsPGIP1	POLYGALACTURONASE-INHIBITING PROTEIN 1	Polygalacturonase-inhibiting protein 1, polygalacturonase inhibiting protein 1	POLYGALACTURONASE-INHIBITING PROTEIN 1		5	leucine-rich repeat (LRR) proteins, inhibitor of fungal polygalacturonase. AM180652. CAJ55691.  Os05g0104300 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0104200	LOC_Os05g01380.1				GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000203 - bacterial leaf streak disease resistance, TO:0000439 - fungal disease resistance, TO:0002668 - jasmonic acid content, TO:0000255 - sheath blight disease resistance	PO:0020104 - leaf sheath 
7205	PGIP2	Ospgip2, pgip2, OsPGIP2	POLYGALACTURONASE-INHIBITING PROTEIN 2	Polygalacturonase-inhibiting protein 2, polygalacturonase inhibiting protein 2	POLYGALACTURONASE-INHIBITING PROTEIN 2		5	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AM180653. CAJ55692.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0104150	LOC_Os05g01370.1				GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0002238 - response to molecule of fungal origin	TO:0000255 - sheath blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000439 - fungal disease resistance	
7206	PGIP3	Ospgip3, pgip3, OsPGIP3	POLYGALACTURONASE-INHIBITING PROTEIN 3	Polygalacturonase-inhibiting protein 3, polygalacturonase inhibiting protein 3	POLYGALACTURONASE-INHIBITING PROTEIN 3		5	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AM180654. CAJ55693.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0104600	LOC_Os05g01430.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000203 - bacterial leaf streak disease resistance, TO:0000439 - fungal disease resistance	
7207	PGIP4	Ospgip4, pgip4, OsPGIP4	POLYGALACTURONASE-INHIBITING PROTEIN 4	Polygalacturonase-inhibiting protein 4, polygalacturonase inhibiting protein 4	POLYGALACTURONASE-INHIBITING PROTEIN 4		5	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AM180655. CAJ55694.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0104700	LOC_Os05g01444.1				GO:0006952 - defense response, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000439 - fungal disease resistance, TO:0002668 - jasmonic acid content, TO:0000203 - bacterial leaf streak disease resistance	
7215	qHD13	Hd13	HEADING DATE (QTL)-13	heading date(QTL)-13			12		 Reproductive organ - Heading date,  Reproductive organ								
7216	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a	HEADING DATE 3A	heading date 3A, Heading date-3a, Heading date (QTL)-3(t), Flowering locus T, FT-like gene 2	HD3A PROTEIN	hd3a, hd3a-1, hd3a-2, hd3a-3	6	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. PO:0006318; floret (sense Poaceae. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. ortholog of Arabidopsis FT. Q93WI9. AB052941, AB052942, AB052943, AB052944. JN594212-JN594326 (O.sativa and other wild rice species). AB062675. AB426880-AB426888 (O. sativa and other wild rice species). GU727015-GU727061 (wild rice species). KM043287-KM043383  (O.sativa and other wild rice species). GO:1901698: response to nitrogen compound. 	 Reproductive organ - Heading date,  Reproductive organ,  Character as QTL - Yield and productivity	Os06g0157700	LOC_Os06g06320.1	GR:0060442			GO:0003700 - transcription factor activity, GO:0008429 - phosphatidylethanolamine binding, GO:0005634 - nucleus, GO:0009909 - regulation of flower development, GO:0048575 - short-day photoperiodism, flowering, GO:0003006 - reproductive developmental process, GO:0009416 - response to light stimulus, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0030154 - cell differentiation, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0009737 - response to abscisic acid stimulus, GO:0010229 - inflorescence development, GO:0009908 - flower development, GO:0009648 - photoperiodism, GO:0005737 - cytoplasm, GO:0005543 - phospholipid binding, GO:0048572 - short-day photoperiodism, GO:0031210 - phosphatidylcholine binding	TO:0002616 - flowering time, TO:0000152 - panicle number, TO:0000011 - nitrogen sensitivity, TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000396 - grain yield, TO:0000137 - days to heading, TO:0000469 - days to maturity, TO:0000229 - photoperiod sensitivity, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent, TO:0000447 - filled grain number	PO:0009082 - spikelet floret , PO:0009003 - sporophyte , PO:0009010 - seed , PO:0009013 - portion of meristem tissue , PO:0009049 - inflorescence , PO:0000230 - inflorescence meristem 
7217	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3, OsLEA3A, LEA3A	LATE EMBRYOGENESIS ABUNDANT 3-1	Late embryogenesis abundant protein 3, late embryogenesis abundant protein 19, Group 3 LEA (type I) protein	LATE EMBRYOGENESIS ABUNDANT PROTEIN 3		5	DQ837728. DQ789359. A2Y720. EF444535. U57641. P0C5A4. Z68090. A2Y720. GO:1901001: negative regulation of response to salt stress. OsLEA19 in Liu et al. 2022.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0542500 	LOC_Os05g46480.4, LOC_Os05g46480.3, LOC_Os05g46480.1, LOC_Os05g46480.2				GO:0009411 - response to UV, GO:0009753 - response to jasmonic acid stimulus, GO:0031667 - response to nutrient levels, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0006995 - cellular response to nitrogen starvation, GO:0009735 - response to cytokinin stimulus, GO:0042594 - response to starvation, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000507 - osmotic adjustment capacity, TO:0000011 - nitrogen sensitivity, TO:0000259 - heat tolerance	
7221	HBD3	hbd3	HYBRID BREAKDOWN 3	hybrid breakdown 3			11	The gene on chromosome 11, hbd3, was mapped between RM5824 and RM1341. hbd3 was mapped to the NBS-LRR gene cluster region.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0007275 - multicellular organismal development		
7226	MRKa	MRKa, RKa, TRKa	MINGHUI RECEPTOR KINASE A	LRR receptor kinase-like (RK) protein a, RK protein a, receptor-kinase gene a in Minghui 63, receptor-kinase gene a in Teqing	MINGHUI RECEPTOR KINASE A		11	AY364476 (replaced by DQ355952). DQ355952, DQ355953. wild rice orthologs: OoRKa (O. officinalis), OmRKa (O. minuta).	 Biochemical character						GO:0004872 - receptor activity, GO:0016301 - kinase activity, GO:0016021 - integral to membrane, GO:0006952 - defense response, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
7227	MRKc	MRKc, RKc, TRKc	MINGHUI RECEPTOR KINASE C	LRR receptor kinase-like protein c, RK protein c, receptor-kinase gene c in Minghui 63, receptor-kinase gene a in Teqing	MINGHUI RECEPTOR KINASE C		11	AY364476 (replaced by DQ355952). DQ355952, DQ355955. wild rice ortholog: OmRKc (O. minuta).	 Biochemical character	Os11g0695800	LOC_Os11g47310.1				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0016301 - kinase activity, GO:0004872 - receptor activity		
7228	MRKd	MRKd, RKd, TRKd	MINGHUI RECEPTOR KINASE D	LRR receptor kinase-like protein d, RK protein d, receptor-kinase gene d in Minghui 63, receptor-kinase gene d in Teqing	MINGHUI RECEPTOR KINASE D		11	pseudogene. AY364476 (replaced by DQ355952). DQ355952, DQ355953.									
7229	EIF4E	eIF(iso)4E	EUKARYOTIC INITIATION FACTOR 4E		EUKARYOTIC INITIATION FACTOR 4E				 Biochemical character						GO:0006413 - translational initiation		
7230	PI40	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40	PYRICULARIA ORYZAE RESISTANCE 40	Pyricularia grisea resistance 40, Magnaporthe grisea resistance 40, Blast resistance 40			6	Original line is IR65482-4-136-2-2 (O. australiensis). Map position (54.1-61.6 cM). Pi40(t) is one of the NBS-LRR genes in the Pi2/Pi9 cluster on chromosome 6 (Zhu et al. 2012).	 Tolerance and resistance - Disease resistance,  Character as QTL - Grain quality						GO:0009620 - response to fungus	TO:0000510 - penetrated to total root ratio, TO:0000477 - panicle blast disease resistance	
7231	PIZ5	Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2	PYRICULARIA ORYZAE RESISTANCE Z5	Magnaporthe grisea resistance z5, Blast resistance z5			6	Original line is Tadukan (Indica). Pi2(t) was renamed Pi-z5. Because Pi-2(t) was allelic to Pi-z, Pi-z is used for showing the locus and the first letter of the donor variety 5173 is given as a superscript as Pi-z5 (Kinoshita et al. 1994).	 Tolerance and resistance - Disease resistance					58.7	GO:0009620 - response to fungus		
7233	ClpP5	OsClpP5	CHLOROPLAST PROTEASE 5	pale-yellow-leaf	CHLOROPLAST PROTEASE 5	pyl-v	3		 Biochemical character						GO:0008233 - peptidase activity		
7236	DX	Dx	DWARF 986083D						 Vegetative organ - Culm						GO:0007275 - multicellular organismal development		
7238	qGL-3a	qGL-3a															
7240	qCTB8	qCTB8															
7243	qPE9-2	qPE9-2															
7245	qSPP7	qSPP7															
7248	qPBN6	qPBN6															
7249	qSBN1	qSBN1															
7251	ABA8OX1	OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1, OsABA8'OH1, ABA8'OH1	ABA-8'-HYDROXYLASE 1	Abscisic acid 8'-hydroxylase 1, ABA 8'-hydroxylase 1 ; Cytochrome P450 707A5, ABA 8'-hydroxylase1	ABA-8'-HYDROXYLASE 1	osaba8ox1, aba8ox1	2	EC=1.14.13.9. Q09J79(indica). Q05JG2(japonica). TO:0020098: nitrate sensitivity. GO:0071731: response to nitric oxide.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Seed - Physiological traits - Dormancy,  Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0703600	LOC_Os02g47470.3, LOC_Os02g47470.2, LOC_Os02g47470.1	GR:0101185			GO:0055114 - oxidation reduction, GO:0005783 - endoplasmic reticulum, GO:0010029 - regulation of seed germination, GO:0009055 - electron carrier activity, GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity, GO:0016021 - integral to membrane, GO:0032940 - secretion by cell, GO:0009414 - response to water deprivation, GO:0020037 - heme binding, GO:0046345 - abscisic acid catabolic process, GO:0009651 - response to salt stress, GO:0010167 - response to nitrate, GO:0007263 - nitric oxide mediated signal transduction, GO:0030912 - response to deep water, GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0009845 - seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0016491 - oxidoreductase activity, GO:0009413 - response to flooding, GO:0022900 - electron transport chain, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium	TO:0000103 - deepwater stress, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0000478 - abscisic acid concentration, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance, TO:0000430 - germination rate, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000286 - submergence sensitivity	PO:0009006 - shoot system , PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
7252	ABA8OX2	OsABA8OX2, OsABA8ox2, CYP707A6, OsCYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2, OsABA8'ox2, ABA8'ox2, OsABAX2, ABAX2, OsABA8'OH2, ABA8'OH2	ABA-8'-HYDROXYLASE 2	Abscisic acid 8'-hydroxylase 2, ABA 8'-hydroxylase 2, Cytochrome P450 707A6	ABA-8'-HYDROXYLASE 2		8	EC=1.14.13.93 Q6ZDE3(japonica). Q09J78(indica).	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os08g0472800	LOC_Os08g36860.1				GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity, GO:0009408 - response to heat, GO:0009055 - electron carrier activity, GO:0046345 - abscisic acid catabolic process, GO:0009415 - response to water, GO:0009845 - seed germination, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0055114 - oxidation reduction, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000237 - water stress trait, TO:0000276 - drought tolerance	PO:0007057 - 0 seed germination stage 
7253	ABA8OX3	OsABA8OX3, OsABA8ox3, CYP707A7, OsCYP707A7, OsAba-ox3, OsABA8ox3, OsABA8'ox3, ABA8'ox3, OsABAX3, ABAX3, OsABA8'OH3, ABA8'OH3	ABA-8'-HYDROXYLASE 3	Abscisic acid 8'-hydroxylase 3, ABA 8'-hydroxylase 3, Cytochrome P450 707A7	ABA-8'-HYDROXYLASE 3	aba8ox3	9	EC=1.14.13.93 Q0J185(japonica). A2Z212(indica). GO:2000280: regulation of root development. GO:2000033: regulation of seed dormancy process. 	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy,  Character as QTL - Germination	Os09g0457100	LOC_Os09g28390.1				GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0010295 - (+)-abscisic acid 8'-hydroxylase activity, GO:0009055 - electron carrier activity, GO:0009408 - response to heat, GO:0051607 - defense response to virus, GO:0055114 - oxidation reduction, GO:0046345 - abscisic acid catabolic process, GO:0020037 - heme binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0048364 - root development, GO:0060359 - response to ammonium ion, GO:0016021 - integral to membrane, GO:0010162 - seed dormancy, GO:0010231 - maintenance of seed dormancy, GO:0009414 - response to water deprivation, GO:0010353 - response to trehalose stimulus	TO:0000656 - root development trait, TO:0000516 - relative root length, TO:0000148 - viral disease resistance, TO:0002667 - abscisic acid content, TO:0000259 - heat tolerance, TO:0000020 - black streak dwarf virus resistance, TO:0000253 - seed dormancy, TO:0000276 - drought tolerance, TO:0000578 - root fresh weight, TO:0000524 - submergence tolerance	PO:0007520 - root development stage , PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage 
7254	ACR1	OsACR1	ACT DOMAIN REPEAT PROTEIN 1	ACT-domain repeat protein 1	ACT DOMAIN REPEAT PROTEIN 1				 Biochemical character						GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7255	ACR5	OsACR5	ACT DOMAIN REPEAT PROTEIN 5	ACT-domain repeat protein 5	ACT DOMAIN REPEAT PROTEIN 5		3	AB117751.	 Biochemical character	Os03g0598100	LOC_Os03g40100.1				GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7256	ACR6	OsACR6	ACT DOMAIN REPEAT PROTEIN 6	ACT-domain repeat protein 6	ACT DOMAIN REPEAT PROTEIN 6		4	AB162116.	 Biochemical character	Os04g0391500	LOC_Os04g32110.1				GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7257	ACR7	OsACR7	ACT DOMAIN REPEAT PROTEIN 7	ACT-domain repeat protein 7	ACT DOMAIN REPEAT PROTEIN 7		3	AB117750.	 Biochemical character	Os03g0413100	LOC_Os03g29980.2				GO:0008152 - metabolic process, GO:0031072 - heat shock protein binding, GO:0016597 - amino acid binding, GO:0005634 - nucleus		
7258	ACR8	OsACR8	ACT DOMAIN REPEAT PROTEIN 8	ACT-domain repeat protein 8	ACT DOMAIN REPEAT PROTEIN 8		8	AB117935.	 Biochemical character	Os08g0533600	LOC_Os08g42100.1				GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7259	ACR9	OsACR9	ACT DOMAIN REPEAT PROTEIN 9	ACT-domain repeat protein 9	ACT DOMAIN REPEAT PROTEIN 9		3	AB117936.	 Biochemical character	Os03g0247900	LOC_Os03g14370.1, LOC_Os03g14370.2				GO:0016597 - amino acid binding, GO:0008152 - metabolic process		
7261	DSH1	OsDSH1	DIHYDROSPHINGOSINE C4 HYDROXYLASE 1	dihydrosphingosine C4 hydroxylase 1	DIHYDROSPHINGOSINE C4 HYDROXYLASE 1		6	BAD37310, BAD37461. PO:0009073; stigma ; PO:0020121; lateral root ; PO:0005020; vascular bundle ; PO:0020144; apical meristem ; PO:0009013; meristem. GRO:0007142; 1-4 leaf stage.	 Reproductive organ - Pollination, fertilization, fertility	Os06g0226950	LOC_Os06g12250.1	GR:0080040			GO:0016020 - membrane, GO:0006665 - sphingolipid metabolic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030148 - sphingolipid biosynthetic process, GO:0000170 - sphingosine hydroxylase activity, GO:0003824 - catalytic activity, GO:0008152 - metabolic process	TO:0000420 - fertility related trait	PO:0009013 - portion of meristem tissue , PO:0005020 - vascular bundle , PO:0020121 - lateral root , PO:0009073 - stigma , PO:0020144 - apical meristem 
7262	DSH2	DSH2	DIHYDROSPHINGOSINE C4 HYDROXYLASE 2	dihydrosphingosine C4 hydroxylase 2	DIHYDROSPHINGOSINE C4 HYDROXYLASE 2				 Biochemical character						GO:0003824 - catalytic activity, GO:0006665 - sphingolipid metabolic process, GO:0000170 - sphingosine hydroxylase activity, GO:0008152 - metabolic process, GO:0030148 - sphingolipid biosynthetic process, GO:0016020 - membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle		
7263	DSH3	DSH3	DIHYDROSPHINGOSINE C4 HYDROXYLASE 3	dihydrosphingosine C4 hydroxylase 3	DIHYDROSPHINGOSINE C4 HYDROXYLASE 3				 Biochemical character						GO:0000170 - sphingosine hydroxylase activity, GO:0003824 - catalytic activity, GO:0030148 - sphingolipid biosynthetic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0008152 - metabolic process, GO:0016020 - membrane, GO:0006665 - sphingolipid metabolic process		
7264	DSH4	DSH4	DIHYDROSPHINGOSINE C4 HYDROXYLASE 4	dihydrosphingosine C4 hydroxylase 4	DIHYDROSPHINGOSINE C4 HYDROXYLASE 4				 Biochemical character						GO:0008152 - metabolic process, GO:0006665 - sphingolipid metabolic process, GO:0016020 - membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0003824 - catalytic activity, GO:0030148 - sphingolipid biosynthetic process, GO:0000170 - sphingosine hydroxylase activity		
7265	DSH5	DSH5	DIHYDROSPHINGOSINE C4 HYDROXYLASE 5	dihydrosphingosine C4 hydroxylase 5	DIHYDROSPHINGOSINE C4 HYDROXYLASE 5				 Biochemical character						GO:0006665 - sphingolipid metabolic process, GO:0030148 - sphingolipid biosynthetic process, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0003824 - catalytic activity, GO:0016020 - membrane, GO:0008152 - metabolic process, GO:0000170 - sphingosine hydroxylase activity		
7266	FON3	FON3	FLORAL ORGAN NUMBER 3	floral organ number3					 Reproductive organ - Inflorescence,  Reproductive organ						GO:0009887 - organ morphogenesis, GO:0009888 - tissue development		
7267	GME	GME	GDP-D-MANNOSE 3',5'-EPIMERASE	"GDP-d-mannose 3\"\", 5\"\"-epimerase"	GDP-D-MANNOSE 3,5-EPIMERASE				 Biochemical character						GO:0047918 - GDP-mannose 3,5-epimerase activity		
7268	GSTU17	OsGSTU17, OsGST23, GST23	TAU GLUTATHIONE S-TRANSFERASE 17	glutathione S-transferase 17, Glutathione S-transferase 23	TAU GLUTATHIONE S-TRANSFERASE 17	osgstu17, osgstu17-1, osgstu17-2	9	AF402804. OsGST23 in Wang et al. 2015. a predicted target of osa-miR1850.2.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0467200	LOC_Os09g29200.1				GO:0009409 - response to cold, GO:0004364 - glutathione transferase activity, GO:0009414 - response to water deprivation	TO:0000636 - relative shoot dry weight, TO:0000303 - cold tolerance, TO:0000644 - relative root dry weight, TO:0000276 - drought tolerance, TO:0000143 - relative biomass, TO:0000605 - hydrogen peroxide content	
7270	LA1	OsLa1	LAZY 1	OsLazy1, LAZY1		lazy1, lazy1-1, lazy1-2, lazy1-3, la1-Shiokari, la1-ZF802, la, la-2, la1	11	DQ855268. a gravitropism-related gene. GO:2000012: regulation of auxin polar transport.	 Character as QTL - Germination,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os11g0490600	LOC_Os11g29840.1				GO:0009734 - auxin mediated signaling pathway, GO:0009629 - response to gravity, GO:0009926 - auxin polar transport, GO:0010031 - circumnutation, GO:0009413 - response to flooding, GO:0009590 - detection of gravity, GO:0009845 - seed germination, GO:0009630 - gravitropism	TO:0000567 - tiller angle, TO:0002693 - gravity response trait, TO:0000524 - submergence tolerance, TO:0000207 - plant height	PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage 
7273	BLE3	OsBLE3	BRASSINOLIDE ENHANCED GENE 3	brassinolide-enhanced 3, BL-enhanced 3, UPF0497 membrane protein BLE3, Protein brassinolide-enhanced 3, Protein BL-enhanced 3	UPF0497 MEMBRANE PROTEIN BLE3		5	Os05g0245300. LOC_Os05g15630. A2Y2B7(indica). Q84UT5(japonica). PO:0020148; shoot apical meristem ; PO:0020104; leaf sheath ; PO:0009015; vascular tissue ; PO:0020142; stem internode ; PO:0009005; root. GRO:0007048; 04-stem elongation stage.	 Other	Os05g0245300	LOC_Os05g15630.1	GR:0080018			GO:0007275 - multicellular organismal development, GO:0009826 - unidimensional cell growth, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016020 - membrane, GO:0035264 - multicellular organism growth, GO:0003824 - catalytic activity	TO:0000207 - plant height, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000084 - root number, TO:0000227 - root length	PO:0009015 - portion of vascular tissue , PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0020142 - stem internode , PO:0020104 - leaf sheath 
7274	CAX1A	OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a	Ca(2+)/H(+) EXCHANGER 1A	Vacuolar cation/proton exchanger 1a, Ca(2+)/H(+) exchanger 1a, cation/H+ exchanger 1a, cation/proton exchanger 1a, cation/H exchanger 1a, Na+/Ca2+ Exchanger 2, Sodium/Calcium exchanger 2, cation exchanger 1a	Ca(2+)/H(+) EXCHANGER 1A		1	AB112656. Q769E5. Oryza barthii: ObarCAX1a: OBART01G19480, Oryza brachyantha: ObraCAX1a: OB01G29140, Oryza glaberrima: OglaCAX1a: ORGLA01G0159500, Oryza glumipatula: OgluCAX1a: OGLUM01G23110, Oryza longistaminata: OlCAX1a: OLONG_003101, Oryza meridionalis: OmCAX1a: OMERI03G17940, Oryza nivara: OnCAX1a: ONIVA01G22100, Oryza punctata: OpCAX1a: OPUNC01G19850, Oryza rufipogon: OrCAX1a: ORUFI01G21940. TO:0006059: cadmium content trait. PO:0030123: panicle inflorescence. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0557500	LOC_Os01g37690.1, LOC_Os01g37690.2				GO:0015691 - cadmium ion transport, GO:0030912 - response to deep water, GO:0006816 - calcium ion transport, GO:0010044 - response to aluminum ion, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016036 - cellular response to phosphate starvation, GO:0005774 - vacuolar membrane, GO:0015297 - antiporter activity, GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0008324 - cation transmembrane transporter activity, GO:0009411 - response to UV, GO:0005773 - vacuole, GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0055073 - cadmium ion homeostasis, GO:0051592 - response to calcium ion, GO:0009414 - response to water deprivation	TO:0000011 - nitrogen sensitivity, TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000102 - phosphorus sensitivity, TO:0000354 - aluminum sensitivity	PO:0000003 - whole plant , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0009005 - root , PO:0007033 - whole plant development stage 
7275	CCA1	OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1, DLN203, OsDLN203, LEM1, OsLEM1, Nhd1, OsNhd1	CIRCADIAN CLOCK ASSOCIATED 1	LATE ELONGATED HYPOCOTYL, DLN repressor 203, DLN motif protein 203, lvp1 enhancer mutant 1, N-mediated heading date1		oslhy, lem1, oscca1, oscca1-1, oscca1-2, nhd1, nhd1-1, nhd1-2, nhd1-3	8	a rice ortholog of Arabidopsis gene for circadian clock component. the single ortholog of Arabidopsis LHY/CCA1. BF889434. AY885916-AY885946 and DQ374829-DQ374856 (O. sativa and other wild rice species, partial ads). a CCA1 ortholog in rice. GO:1902347: response to strigolactone. TO:0000739: shoot axis morphology trait. TO:0000847: panicle inflorescence morphology trait. GO:2000028: regulation of photoperiodism, flowering. GO:1902347: response to strigolactone. GO:1901698: response to nitrogen compound. GO:1904844: response to L-glutamine. GO:0060359: response to ammonium ion. TO:0020093: nitrogen content. GO:0071705: nitrogen compound transport.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Heterochrony,  Seed,  Tolerance and resistance - Disease resistance	Os08g0157600	LOC_Os08g06110.2, LOC_Os08g06110.5, LOC_Os08g06110.4, LOC_Os08g06110.3				GO:0048316 - seed development, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0010228 - vegetative to reproductive phase transition, GO:0048573 - photoperiodism, flowering, GO:0042752 - regulation of circadian rhythm, GO:0007623 - circadian rhythm, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009743 - response to carbohydrate stimulus, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0050832 - defense response to fungus, GO:0019740 - nitrogen utilization, GO:0010229 - inflorescence development, GO:0009730 - detection of carbohydrate stimulus	TO:0002639 - shoot branching, TO:0000137 - days to heading, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0002616 - flowering time, TO:0000329 - tillering ability, TO:0000371 - yield trait, TO:0000011 - nitrogen sensitivity, TO:0000621 - inflorescence development trait	PO:0009006 - shoot system , PO:0020148 - shoot apical meristem , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0000055 - bud , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0025034 - leaf , PO:0009010 - seed , PO:0009049 - inflorescence 
7276	CEL9A	OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A	CELLULASE 9A	glycoside hydrolase OsGH9C3, glycoside hydrolase 9C3, endoglucanase 5	CELLULASE 9A		1	LOC_Os01g12070. Q5NAT0. AB038510. a 68 kDa EGase. an ortholog of TomCel8, a tomato EGase. auxin-induced 51 kDa endo-1,4-beta-glucanase. 	 Biochemical character	Os01g0220100	LOC_Os01g12070.1				GO:0030245 - cellulose catabolic process, GO:0007047 - cell wall organization, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0008810 - cellulase activity	TO:0000163 - auxin sensitivity	
7277	CEL9D	OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1	CELLULASE 9D	Endoglucanase 9, Endo-1, 4-beta glucanase 9, glycoside hydrolase OsGH9A1, glycoside hydrolase 9A1	CELLULASE 9D		3	EC=3.2.1.4 P0C1U4. AB040817. a KORRIGAN (KOR) homolog.	 Biochemical character	Os03g0329500	LOC_Os03g21210.1				GO:0008810 - cellulase activity, GO:0007047 - cell wall organization, GO:0030245 - cellulose catabolic process, GO:0016021 - integral to membrane, GO:0043622 - cortical microtubule organization, GO:0009504 - cell plate, GO:0009826 - unidimensional cell growth, GO:0005886 - plasma membrane, GO:0042538 - hyperosmotic salinity response, GO:0009735 - response to cytokinin stimulus, GO:0048367 - shoot development, GO:0009624 - response to nematode, GO:0005769 - early endosome, GO:0005794 - Golgi apparatus		
7278	CLC-1	OsCLC-1	CHLORIDE CHANNEL 1		CHLORIDE CHANNEL 1		4	AB069966.	 Biochemical character						GO:0005254 - chloride channel activity		
7281	FAD7	OsFAD7	OMEGA-3 FATTY ACID DESATURASE 7	w-3 fatty acid desaturase-7	OMEGA-3 FATTY ACID DESATURASE 7			AB232382. GO:0080167 response to karrikin.	 Biochemical character						GO:0004768 - stearoyl-CoA 9-desaturase activity, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0042389 - omega-3 fatty acid desaturase activity, GO:0005783 - endoplasmic reticulum, GO:0009941 - chloroplast envelope, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0009409 - response to cold		
7282	FAD8	OsFAD8, Osfad8	OMEGA-3 FATTY ACID DESATURASE 8	w-3 fatty acid desaturase-8, chloroplast omega-3 fatty acid desaturase 8	OMEGA-3 FATTY ACID DESATURASE 8	osfad8	7	AB232383. AY848920. GO:0080167 response to karrikin. qPL7 (QTL for panicle length on chromosome 7) might be an allele of OsFAD8 (Wang et al. 2021).	 Biochemical character,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os07g0693800 	LOC_Os07g49310.1, LOC_Os07g49310.2				GO:0004768 - stearoyl-CoA 9-desaturase activity, GO:0042389 - omega-3 fatty acid desaturase activity, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0009409 - response to cold, GO:0005783 - endoplasmic reticulum, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0009941 - chloroplast envelope	TO:0000040 - panicle length, TO:0000303 - cold tolerance	
7283	KSL10	OsKSL10, KS10, OsKS10, OsTPS33, TPS33, TPS21, OsTPS21	KAURENE SYNTHASE-LIKE 10	"Ent-kaurene synthase 10, \"Ent-sandaracopimara-8(14), 15-diene synthase\", Ent-sandaracopimaradiene synthase, Ent-kaurene synthase-like 10, ent-sandaracopimaradiene synthase, ent-pimaradiene synthase, terpene synthase 33"	KAURENE SYNTHASE-LIKE 10		12	EC=4.2.3.29 Q2QQJ5. DQ823355. AB126937. TPS21 in Sun et al. 2022.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0491800	LOC_Os12g30824.1, LOC_Os12g30824.2	GR:0101309			GO:0009899 - ent-kaurene synthase activity, GO:0000287 - magnesium ion binding, GO:0016829 - lyase activity, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0008152 - metabolic process, GO:0006952 - defense response, GO:0051501 - diterpene phytoalexin metabolic process, GO:0002238 - response to molecule of fungal origin, GO:0034280 - ent-sandaracopimaradiene synthase activity, GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
7284	KSL11	OsKSL11, KS11, OsKS11	KAURENE SYNTHASE-LIKE 11	Ent-kaurene synthase 11, Stemod-13(17)-ene synthase, Stemodene synthase, Ent-kaurene synthase-like 11, syn-stemod-13(17)-ene synthase, exo-stemodene synthase, syn-stemodene synthase	KAURENE SYNTHASE-LIKE 11			EC=4.2.3.34 DQ100373. Q1AHB2.	 Biochemical character			GR:0101316			GO:0016829 - lyase activity, GO:0034283 - syn-stemod-13(17)-ene synthase activity, GO:0006952 - defense response, GO:0000287 - magnesium ion binding, GO:0051501 - diterpene phytoalexin metabolic process, GO:0008152 - metabolic process, GO:0009536 - plastid, GO:0009899 - ent-kaurene synthase activity		
7293	LOL2	OsLOL2, OsLSD5, OsLOL5, LOL5	LSD1-LIKE ZINC FINGER PROTEIN	LSD1-like 2, lsd one like 2, LSD1-like-5	LSD1-LIKE ZINC FINGER PROTEIN		1	Q704V3. AU031595. similar to Arabidopsis LOL2 (lsd one like 2). an LSD1 ortholog. AJ620677. OsLOL5 in Guan et al. 2016.	 Other,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os01g0612700	LOC_Os01g42710.1				GO:0045927 - positive regulation of growth, GO:0009686 - gibberellin biosynthetic process, GO:0031349 - positive regulation of defense response, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0033194 - response to hydroperoxide, GO:0010446 - response to alkalinity, GO:0031341 - regulation of cell killing, GO:0006979 - response to oxidative stress, GO:0005634 - nucleus	TO:0000652 - leaf necrosis, TO:0000175 - bacterial blight disease resistance, TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
7294	GSN1	MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1	GRAIN SIZE AND NUMBER1	Oryza sativa Mitogen-Activated Protein Kinase Phosphatase 1, Mitogen-Activated Protein Kinase Phosphatase 1, MAPK phosphatase 1, large grain8, LARGE GRAIN 8, grain size and number1, grain size and number 1, grain length and awn 1	MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1	large8-1, large8-2, large8-3, gsn1, gla1	5	AB284130. TO:0000970: panicle density.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Biochemical character	Os05g0115800	LOC_Os05g02500.3, LOC_Os05g02500.2, LOC_Os05g02500.1				GO:0005737 - cytoplasm, GO:0016301 - kinase activity, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0010225 - response to UV-C, GO:0009651 - response to salt stress, GO:0004725 - protein tyrosine phosphatase activity, GO:0042127 - regulation of cell proliferation, GO:0045595 - regulation of cell differentiation, GO:0008285 - negative regulation of cell proliferation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0048316 - seed development, GO:0033549 - MAP kinase phosphatase activity	TO:0006032 - panicle size, TO:0002660 - cytokinin content, TO:0002759 - grain number, TO:0000456 - spikelet number, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0000391 - seed size, TO:0000072 - awn length, TO:0000397 - grain size, TO:0000181 - seed weight, TO:0000590 - grain weight, TO:0000653 - seed development trait	PO:0009066 - anther , PO:0025349 - awn , PO:0001170 - seed development stage , PO:0009039 - glume , PO:0009051 - spikelet , PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf 
7296	MPK3	OsMPK3	MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 3		MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 3				 Biochemical character						GO:0033549 - MAP kinase phosphatase activity		
7297	MPK6	OsMPK6	MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 6		MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 6				 Biochemical character						GO:0033549 - MAP kinase phosphatase activity		
7298	MSBP1	OsMSBP1, OsCYB5-12, CYB5-12	MEMBRANE STEROID BINDING PROTEIN 1	cytochrome b5-12	MEMBRANE STEROID BINDING PROTEIN 1		10		 Biochemical character	Os10g0502500 	LOC_Os10g35850.1				GO:0005496 - steroid binding, GO:0005886 - plasma membrane		
7299	MSBP2	OsMSBP2, OsMSBP1, OsCYB5-13, CYB5-13	MEMBRANE STEROID BINDING PROTEIN 2	membrane steroid-binding protein 1 homologue, cytochrome b5-13	MEMBRANE STEROID BINDING PROTEIN 2		10	OsMSBP1 in Xu et al. 2015.	 Biochemical character	Os10g0502600 	LOC_Os10g35870.1				GO:0005496 - steroid binding, GO:0020037 - heme binding		
7300	NCED2	OSNCED2, OsNCED2, OsNCED5, NCED5	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2	9-cis-epoxycarotenoid dioxygenase 2	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2		12	AL731885. AY838901. OsNCED5 in Welsch et al. 2008, Teng et al. 2014, Xiong et al. 2014, Du et al. 2015, Zhao et al. 2016, Hong et al. 2016, Zhang et al. 2018, Liu et al. 2018, Liu et al. 2019, Kim et al. 2019, Liang et al. 2019, Cao et al. 2020, Suriyasak et al. 2020, Yuan et al. 2021, Verma et al. 2019, Huang et al. 2021, Santosh et al. 2021, Yang et al. 2021, Wang et al. 2021, He et al. 2022, Long et al. 2023, Dai et al. 2024. an ABA biosynthesis gene.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Biochemical character,  Seed - Physiological traits - Dormancy	Os12g0617400	LOC_Os12g42280.1				GO:0009845 - seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009688 - abscisic acid biosynthetic process, GO:0009409 - response to cold, GO:0001666 - response to hypoxia, GO:0009507 - chloroplast, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity	TO:0000015 - oxygen sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000114 - flooding related trait	PO:0007616 - flowering stage , PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
7301	NCED3	OSNCED3, OsNCED-3, OsNCED3, OsNCED3a, NCED3a, OsNCED4, NCED4, OsNECD2, OsNCED2b, NCED2b	9-CIS-EPOXYCAROTENOID DIOXYGENASE 3	9-cis-epoxycarotenoid dioxygenase 3	9-CIS-EPOXYCAROTENOID DIOXYGENASE 3	osnced4	7	AP005632. AY838900. OsNCED4 in Welsch et al. 2008, Xu et al. 2013, Liang et al. 2014, Teng et al. 2014, Xiong et al. 2014, Du et al. 2015, Liu et al. 2016, Zhao et al. 2016, Hong et al. 2016, Zong et al. 2016, He et al. 2018, Fu et al. 2018, Zhang et al. 2018, Hwang et al., 2018, Gong et al. 2019, Kim et al. 2019, Liang et al. 2019, Liu et al. 2019, Cao et al. 2020, Suriyasak et al. 2020, Santosh et al. 2021, Li et al. 2021, Wang et al. 2021, Zhou et al. 2022, Li et al. 2022, Wen et al. 2022, Shi et al. 2020, Li et al. 2023, Long et al. 2023, Liu et al. 2023,, Xie et al. 2024, Wang et al. 2024. an ABA biosynthesis gene. OsNECD2 in Du et al. 2015, Dong et al. 2021. OsNCED2b in Dai et al. 2024. GO:1902584: positive regulation of response to water deprivation. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. 	 Biochemical character,  Vegetative organ - Leaf,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed - Physiological traits - Dormancy	Os07g0154100	LOC_Os07g05940.1				GO:0009749 - response to glucose stimulus, GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0001666 - response to hypoxia, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0051707 - response to other organism, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0009414 - response to water deprivation, GO:0010029 - regulation of seed germination, GO:0009507 - chloroplast, GO:0009688 - abscisic acid biosynthetic process	TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000015 - oxygen sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000492 - leaf shape, TO:0000207 - plant height, TO:0000114 - flooding related trait, TO:0000259 - heat tolerance, TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage , PO:0007632 - seed maturation stage , PO:0008037 - seedling , PO:0009006 - shoot system , PO:0007616 - flowering stage 
7302	NPSN11	OsNPSN11, OryzaNPSN11	NOVEL PLANT SNARE 11	SNARE 11	NOVEL PLANT SNARE 11		6	AY740014. AAU94635. t-SNARE.	 Biochemical character	Os06g0715100	LOC_Os06g50120.1, LOC_Os06g50120.2				GO:0016192 - vesicle-mediated transport, GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0016021 - integral to membrane, GO:0009504 - cell plate		
7303	NPSN12	OsNPSN12, OryzaNPSN12	NOVEL PLANT SNARE 12	SNARE 12	NOVEL PLANT SNARE 12		3	AY740015. AAU94636. t-SNARE.	 Biochemical character	Os03g0369800	LOC_Os03g25390.1, LOC_Os03g25390.2, LOC_Os03g25390.3				GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0016192 - vesicle-mediated transport		
7304	NPSN13	OsNPSN13, OryzaNPSN13	NOVEL PLANT SNARE 13	SNARE 13	NOVEL PLANT SNARE 13		7	AY740016. AAU94637. t-SNARE.	 Biochemical character	Os07g0637400	LOC_Os07g44350.1				GO:0005886 - plasma membrane, GO:0016192 - vesicle-mediated transport, GO:0016021 - integral to membrane, GO:0015031 - protein transport		
7305	PCL1	OsPCL1, OsLUX, LUX, OsLVP2, LVP2	PHYTOCLOCK 1	PCL1 homolog, LUX ARRHYTHMO, long vegetative phase2		lvp2-1, lvp2-2, lvp2-3, lvp2-4, lvp2-5, lvp2-6, lvp2-7, lux, oslux	1	AY581256. AB206578. Q94DH3. Circadian clock-associated gene. GO:2000028: regulation of photoperiodism, flowering. TO:0000934: photoperiod-sensitive flowering time trait.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Heterochrony,  Reproductive organ - Heading date	Os01g0971800	LOC_Os01g74020.1				GO:0003682 - chromatin binding, GO:0009409 - response to cold, GO:0010228 - vegetative to reproductive phase transition, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009648 - photoperiodism, GO:0007623 - circadian rhythm, GO:0048511 - rhythmic process, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus	TO:0002662 - leaf rolling tolerance, TO:0002616 - flowering time, TO:0000396 - grain yield, TO:0000137 - days to heading, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000229 - photoperiod sensitivity	PO:0025034 - leaf 
7306	PDK1	OsPDK1	PYRUVATE DEHYDROGENASE KINASE 1	pyruvate dehydrogenase kinase 1	PYRUVATE DEHYDROGENASE KINASE 1				 Biochemical character						GO:0004740 - pyruvate dehydrogenase (acetyl-transferring) kinase activity		
7307	PDK2	OsPDK2	PYRUVATE DEHYDROGENASE KINASE 2	pyruvate dehydrogenase kinase 2	PYRUVATE DEHYDROGENASE KINASE 2				 Biochemical character						GO:0004740 - pyruvate dehydrogenase (acetyl-transferring) kinase activity		
7309	PIP2;3	OsPIP2;3, PIP2-3, OsPIP2-2	PLASMA MEMBRANE INTRINSIC PROTEIN 2;3	Probable aquaporin PIP2-3, Plasma membrane intrinsic protein 2-3, aquaporin 2;3	PLASMA MEMBRANE INTRINSIC PROTEIN 2;3		4	AL662958. Q7XUA6. BE530955. Water channel protein (WCP-III). OsPIP2-2 in Guo et al. 2006. GO:0080170: hydrogen peroxide transmembrane transport.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0521100	LOC_Os04g44060.1				GO:0042542 - response to hydrogen peroxide, GO:0005215 - transporter activity, GO:0042742 - defense response to bacterium, GO:0055085 - transmembrane transport, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009005 - root 
7310	PIP2;5	OsPIP2;5, PIP2-5	PLASMA MEMBRANE INTRINSIC PROTEIN 2;5	Aquaporin PIP2-5, Plasma membrane intrinsic protein 2-5	PLASMA MEMBRANE INTRINSIC PROTEIN 2;5		7	AP004668. Q8GRI8. LOC_Os07g26660.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0448400	LOC_Os07g26660.1				GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0005215 - transporter activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	
7312	SBP	OsSBP, OsCYB5-9, CYB5-9	STEROID BINDING PROTEIN	cytochrome b5-9	STEROID BINDING PROTEIN		2		 Biochemical character	Os02g0793700 	LOC_Os02g55060.1, LOC_Os02g55060.2				GO:0005829 - cytosol, GO:0005496 - steroid binding, GO:0035264 - multicellular organism growth		
7313	TIP1;1	OsTIP1;1, TIP1-1, rTIP1	TONOPLAST INTRINSIC PROTEIN 1;1	tonoplast intrinsic protein 1;1, Probable aquaporin TIP1-1, Tonoplast intrinsic protein 1-1, rice Tip 1, tonoplast intrinsic protein 1	TONOPLAST INTRINSIC PROTEIN 1;1		3	Aquaporin-TIP. Gamma TIP. AC090485. P50156. D25534. GO:0080170: hydrogen peroxide transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0146100	LOC_Os03g05290.1				GO:0006810 - transport, GO:0005774 - vacuolar membrane, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0055085 - transmembrane transport, GO:0030104 - water homeostasis, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0006950 - response to stress, GO:0005794 - Golgi apparatus, GO:0042742 - defense response to bacterium, GO:0005783 - endoplasmic reticulum, GO:0005773 - vacuole, GO:0043674 - columella, GO:0005215 - transporter activity, GO:0009507 - chloroplast, GO:0005886 - plasma membrane	TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
7314	TIP2;1	OsTIP2;1, TIP2-1, TIP2	TONOPLAST INTRINSIC PROTEIN 2;1	tonoplast intrinsic protein 2;1, Probable aquaporin TIP2-1, Tonoplast intrinsic protein 2-1	TONOPLAST INTRINSIC PROTEIN 2;1		2	AP005289. Q7XA61.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0658100	LOC_Os02g44080.1				GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0055085 - transmembrane transport, GO:0005215 - transporter activity	TO:0006001 - salt tolerance	
7315	TIP2;2	OsTIP2;2, TIP2-2	TONOPLAST INTRINSIC PROTEIN 2;2	tonoplast intrinsic protein 2;2, Probable aquaporin TIP2-2, Tonoplast intrinsic protein 2-2	TONOPLAST INTRINSIC PROTEIN 2;2		6	AP004784. Q5Z6F0. LOC_Os06g22960.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0336200	LOC_Os06g22960.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0006970 - response to osmotic stress, GO:0005773 - vacuole, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0055085 - transmembrane transport, GO:0005215 - transporter activity	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
7316	TOC1	OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07	TIMING OF CAB EXPRESSION 1	Two-component response regulator-like PRR1, Pseudo-response regulator 1, A-type RR 21, CCT domain-containing gene 7, CCT (CO, CO-LIKE and TOC1) domain protein 7, CCT domain protein 7	PSEUDO-RESPONSE REGULATOR 1	osprr1, Ostoc1, Ostoc1-1, Ostoc1-2	2	Q689G9, AB189038. circadian clock-related gene. a rice ortholog of Arabidopsis gene for circadian clock component. a rice ortholog of the Arabidopsis TOC1/PRR1 gene. GO:2000028: regulation of photoperiodism, flowering.	 Vegetative organ - Culm,  Heterochrony,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date	Os02g0618200	LOC_Os02g40510.1				GO:0048511 - rhythmic process, GO:0048573 - photoperiodism, flowering, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0031349 - positive regulation of defense response, GO:0007623 - circadian rhythm, GO:0000156 - two-component response regulator activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0042752 - regulation of circadian rhythm	TO:0002616 - flowering time, TO:0000329 - tillering ability, TO:0000207 - plant height, TO:0000112 - disease resistance, TO:0000346 - tiller number, TO:0000137 - days to heading	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0025034 - leaf , PO:0000055 - bud , PO:0009006 - shoot system , PO:0009089 - endosperm , PO:0009009 - plant embryo 
7317	TPS13	OsTPS13	TERPENE SYNTHASE 13	(E)-beta-caryophyllene synthase	TERPENE SYNTHASE 13				 Biochemical character						GO:0010333 - terpene synthase activity		
7318	TPS3	OsTPS3	TERPENE SYNTHASE 3		TERPENE SYNTHASE 3			(E)-beta-caryophyllene synthase. OsTPS3, an enzyme catalyzing the formation of volatile sesquiterpenes, plays a role in indirect defense of rice plants by attracting more parasitoid wasps of Anagrus nilaparvatae.	 Biochemical character,  Tolerance and resistance - Insect resistance						GO:0010333 - terpene synthase activity, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000401 - plant growth hormone sensitivity	
7321	PI39	Pi39(t), Pi39	PYRICULARIA ORYZAE RESISTANCE 39	Pyricularia grisea resistance 39, Magnaporthe grisea resistance 39, Blast resistance 39			12	Original line is Q15.	 Tolerance and resistance - Disease resistance,  Character as QTL - Grain quality					50.4	GO:0009620 - response to fungus	TO:0000510 - penetrated to total root ratio, TO:0000477 - panicle blast disease resistance	
7324	ROMT9	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT, OsCOMT15, COMT15	O-METHYLTRANSFERASE 9	Quercetin 3-O-methyltransferase 1, Flavonol 3-O-methyltransferase 1, caffeic acid 3-O-methyltransferase, Flavonol 3-O-methyltransferase 1, caffeic acid O-methyltransferase 1, 5-hydroxyconiferaldehyde O-methyltransferase 1, 5-hydroxyconiferaldehyde OMT1, 5-HCAld OMT1, Caffeic Acid O-Methyltransferase 15	O-METHYLTRANSFERASE 9	oscomt1	8	EC=2.1.1.76 Q6ZD89. DQ288259. AB122056, XM_480185. ROMT9 is a major OMT required for  biosynthesis (Lam et al. 2015). SCC (sulfur-containing compound) biosynthetic gene. OsCOMT15 in Liang  et al. 2022. GO:1901698: response to nitrogen compound. GO:1900056: negative regulation of leaf senescence. TO:0020109: vascular bundle development trait. GO:1903647: negative regulation of chlorophyll catabolic process. GO:1904821: chloroplast disassembly. PO:0030123: panicle inflorescence. TO:0000975: grain width. TO:0020083: stem diameter.	 Reproductive organ - panicle,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0157500	LOC_Os08g06100.1				GO:0005737 - cytoplasm, GO:0009809 - lignin biosynthetic process, GO:0009411 - response to UV, GO:0009698 - phenylpropanoid metabolic process, GO:0009834 - secondary cell wall biogenesis, GO:0060548 - negative regulation of cell death, GO:0009736 - cytokinin mediated signaling, GO:0009658 - chloroplast organization, GO:0015996 - chlorophyll catabolic process, GO:0046983 - protein dimerization activity, GO:0030755 - quercetin 3-O-methyltransferase activity, GO:0008171 - O-methyltransferase activity, GO:0009741 - response to brassinosteroid stimulus, GO:0010150 - leaf senescence, GO:0009408 - response to heat, GO:0009807 - lignan biosynthetic process, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity, GO:0009507 - chloroplast, GO:0044272 - sulfur compound biosynthetic process, GO:0030187 - melatonin biosynthetic process, GO:0017096 - acetylserotonin O-methyltransferase activity	TO:0000558 - small vascular bundle number, TO:0000733 - lignin biosynthesis trait, TO:0000539 - large vascular bundle number, TO:0002759 - grain number, TO:0000447 - filled grain number, TO:0000152 - panicle number, TO:0000259 - heat tolerance, TO:0000382 - 1000-seed weight, TO:0000399 - grain thickness, TO:0002677 - brassinosteroid sensitivity, TO:0000734 - grain length, TO:0000731 - lignin content, TO:0002758 - flag leaf lamina width, TO:0006001 - salt tolerance, TO:0000472 - vascular bundle number, TO:0000449 - grain yield per plant, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000370 - leaf width, TO:0000051 - stem strength, TO:0000011 - nitrogen sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0002660 - cytokinin content, TO:0000460 - light intensity sensitivity, TO:0000339 - stem thickness, TO:0000160 - UV light sensitivity, TO:0000470 - vascular tissue related trait, TO:0000316 - photosynthetic ability, TO:0000396 - grain yield, TO:0000249 - leaf senescence	PO:0009005 - root , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0009049 - inflorescence , PO:0000039 - shoot axis vascular system , PO:0020104 - leaf sheath , PO:0020141 - stem node , PO:0009047 - stem , PO:0000048 - leaf lamina vascular system 
7326	DTOK0	dTok0	ACTIVE TRANSPOSABLE ELEMENT						 Other						GO:0032196 - transposition		
7327	ADH3	Adh3, adh2(t)*	ALCOHOL DEHYDROGENASE 3	Alcohol dehydrogenase 3, alcohol dehydrogenase-3, Alcohol dehydrogenase 2, alcohol dehydrogenase-2(cDNA)	ALCOHOL DEHYDROGENASE 3				 Biochemical character			GR:0060013			GO:0018468 - alcohol dehydrogenase (acceptor) activity, GO:0004022 - alcohol dehydrogenase (NAD) activity		
7332	BIF2	bif2, Osbif2, OsBIF2, OsPID, PID, OsAGC25, AGC25	BARREN INFLORESCENCE 2	barren inflorescence2, barren inflorescence2-like serine/threonine protein kinase, rice ortholog of PINOID, OsPINOID, PINOID, AGC protein kinase 25	BARREN INFLORESCENCE2-LIKE SERINE/THREONINE PROTEIN KINASE	ospid, ospid-1, ospid-2, ospid-3, ospidb-c1, ospidb-c2, pid, pid-c1, pid-c2, pid cr-25, pid cr-31	12	Q2QM77. GO:2000012 regulation of auxin polar transport, GO:0080167 response to karrikin. TO:0000754: cardinal organ part morphology trait.	 Vegetative organ - Culm,  Biochemical character,  Reproductive organ - Inflorescence,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility	Os12g0614600	LOC_Os12g42020.1				GO:0009908 - flower development, GO:0048480 - stigma development, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0048766 - root hair initiation, GO:0048367 - shoot development, GO:0048364 - root development, GO:0010076 - maintenance of floral meristem identity, GO:0048767 - root hair elongation, GO:0009986 - cell surface, GO:0004674 - protein serine/threonine kinase activity, GO:0048479 - style development, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0048481 - ovule development, GO:0010622 - specification of ovule identity, GO:0048825 - cotyledon development, GO:0009734 - auxin mediated signaling pathway, GO:0035266 - meristem growth, GO:0009707 - chloroplast outer membrane, GO:0009555 - pollen development, GO:0005524 - ATP binding, GO:0009958 - positive gravitropism, GO:0009926 - auxin polar transport	TO:0006038 - floral organ number, TO:0000225 - stamen number, TO:0006010 - lodicule number, TO:0000163 - auxin sensitivity, TO:0000214 - anther shape, TO:0006001 - salt tolerance, TO:0000485 - sterility related trait, TO:0000630 - pedicel length, TO:0000456 - spikelet number, TO:0006022 - floral organ development trait, TO:0000621 - inflorescence development trait, TO:0000346 - tiller number	PO:0007619 - ovule development stage , PO:0001083 - inflorescence development stage 
7333	CAB1R	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b, CAB2R	CHLOROPHYLL A/B BINDING PROTEIN 1R	"\"Chlorophyll a-b binding protein 1, chloroplast precursor\", \"Chlorophyll a-b binding protein 1, chloroplast\", LHCII type I CAB-1, LHCII type I CAB, chlorophyll a/b-binding protein 1, light-harvesting chlorophyll a/b binding protein 1, PSII Cab1"	CHLOROPHYLL A/B BINDING PROTEIN 1R		9	P12330. X13908. D00641. a clock-controlled gene. Lhcb1b in Yamatani et al. 2018. CAB2R in Fang et al. 2020.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os09g0346500	LOC_Os09g17740.1				GO:0016168 - chlorophyll binding, GO:0009523 - photosystem II, GO:0009765 - photosynthesis, light harvesting, GO:0015979 - photosynthesis, GO:0007623 - circadian rhythm, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0018298 - protein-chromophore linkage, GO:0000287 - magnesium ion binding, GO:0009507 - chloroplast, GO:0009522 - photosystem I, GO:0009658 - chloroplast organization, GO:0009637 - response to blue light, GO:0010114 - response to red light	TO:0000159 - blue light sensitivity, TO:0000158 - red light sensitivity, TO:0002715 - chloroplast development trait	
7334	CDSP32	CDSP32	CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN	chloroplastic drought-induced stress protein of 32 kD	CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN				 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation	TO:0002657 - oxidative stress	
7335	CENH3	OsCENH3, CenH3	CENTROMERIC HISTONE 3C	centromeric histone H3, centromere-specific histone H3, centromere-specific H3 histone, centromere-specific histone H3	CENTROMERIC HISTONE 3C		5	Q6T367. AY438639. GQ849328-GQ849334 (wild rice species). HQ123577-HQ123579 (wild rice species). Oryza alta (D0EKP8, D0EKP9), Oryza australiensis (D0EKQ2), Oryza barthii (A0A0D3G978), Oryza glumipatula (A0A0E0A0Z6), Oryza latifolia (E2GIB7, E2GIB8), Oryza meridonalis (A0A0E0DTC0), Oryza meyeriana vra. Granulata (A0A6G1EGA2), Oryza minuta (DOEKQ0, D0EKQ1), Oryza nivara (A0A0E0HG58), Oryza officianalis (E2GIB6), Oryza punctata (D0EKQ3, A0A0E0L436), Oryza rhizomatis (D0EKQ4), Oryza rufipogon (A0A0E0PP98), Oryza sativa ssp indica (B8AZH6).	 Biochemical character	Os05g0489800 	LOC_Os05g41080.1, LOC_Os05g41080.2				GO:0030527 - structural constituent of chromatin, GO:0046982 - protein heterodimerization activity, GO:0000776 - kinetochore, GO:0051382 - kinetochore assembly, GO:0009567 - double fertilization forming a zygote and endosperm, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0006334 - nucleosome assembly, GO:0005515 - protein binding, GO:0003677 - DNA binding, GO:0051983 - regulation of chromosome segregation, GO:0000775 - chromosome, centromeric region		
7336	CPN60	chaperonin 60	CHAPERONIN 60		CHAPERONIN 60				 Biochemical character						GO:0006457 - protein folding, GO:0016465 - chaperonin ATPase complex		
7338	CSLD1	csld1, OsCSLD1, OsCslD1	CELLULOSE SYNTHASE LIKE D1	Cellulose Synthase-Like D1, Cellulose synthase-like protein D1	CELLULOSE SYNTHASE LIKE D1	oscsld1	10	EC=2.4.1.- A2ZAK8(indica). Q8W3F9(japonica). DAA01752. BK000089. GO:0035618: root hair.	 Biochemical character	Os10g0578200	LOC_Os10g42750.1				GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0005794 - Golgi apparatus, GO:0007047 - cell wall organization, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process		
7339	CYCD3	CYCD3	D-TYPE CYCLIN 3		D-TYPE CYCLIN 3				 Biochemical character						GO:0051301 - cell division, GO:0005634 - nucleus, GO:0007049 - cell cycle		
7340	CYCD7	CYCD7	D-TYPE CYCLIN 7		D-TYPE CYCLIN 7				 Biochemical character						GO:0005634 - nucleus, GO:0051301 - cell division, GO:0007049 - cell cycle		
7342	EXPA7	OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26	ALPHA-EXPANSIN 7	Expansin-A7, Alpha-expansin-7	ALPHA-EXPANSIN 7		3	Q852A1. AF247164(cDNA), AF394547(Genomic)	 Biochemical character	Os03g0822000	LOC_Os03g60720.1				GO:0019898 - extrinsic to membrane, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005576 - extracellular region		
7343	EXPB12	OsEXPB12, OsaEXPb1.17	BETA-EXPANSIN 12	Expansin-B12, Beta-expansin-12	BETA-EXPANSIN 12		3	Q10G40.	 Biochemical character	Os03g0645000	LOC_Os03g44290.1, LOC_Os03g44290.2, LOC_Os03g44290.3				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0019953 - sexual reproduction, GO:0005618 - cell wall, GO:0019898 - extrinsic to membrane, GO:0007047 - cell wall organization, GO:0005576 - extracellular region		
7349	GH3-8	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2	GH3-8				7	EF103572. Q0D4Z6, A3BLS0. BGIOSGA023979. a flower-specific Nt-gh3 type gene. OsGH3-2 in Du et al. 2015. GO:1902347: response to strigolactone.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Biochemical character	Os07g0592600	LOC_Os07g40290.1				GO:0051607 - defense response to virus, GO:0009852 - auxin catabolic process, GO:0009908 - flower development, GO:0009863 - salicylic acid mediated signaling pathway, GO:0006955 - immune response, GO:0009651 - response to salt stress, GO:0016874 - ligase activity, GO:0010279 - indole-3-acetic acid amido synthetase activity, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000346 - tiller number, TO:0006001 - salt tolerance, TO:0002672 - auxin content, TO:0000207 - plant height, TO:0000622 - flower development trait, TO:0000172 - jasmonic acid sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0000401 - plant growth hormone sensitivity	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009010 - seed , PO:0007615 - flower development stage 
7353	GID1	gid1, OsGID1, Thl, Os GID1	GIBBERELLIN INSENSITIVE DWARF1	GIBBERELLIN-INSENSITIVE DWARF1, Gibberellin receptor GID1, Gibberellin-insensitive dwarf protein 1, Protein GIBBERELLIN INSENSITIVE DWARF1, Thumbelina, GA-insensitive dwarf 1	GIBBERELLIN-INSENSITIVE DWARF PROTEIN 1	gid1, gid1-1, gid1-2, gid1-3, gid1-4, gid1-7, gid1-8, thl-m	5	SOLUBLE GA RECEPTOR. Gibberellin receptor protein. EC=3.-.-.-  Q6L545. GRO:0007001; rice plant growth stage. GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000033: regulation of seed dormancy process.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os05g0407500	LOC_Os05g33730.1	GR:0020050			GO:0008152 - metabolic process, GO:0010162 - seed dormancy, GO:0004872 - receptor activity, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0016787 - hydrolase activity, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:2000038 - regulation of stomatal complex development, GO:2000037 - regulation of stomatal complex patterning, GO:0010271 - regulation of chlorophyll catabolic process, GO:0009609 - response to symbiotic bacterium, GO:0006109 - regulation of carbohydrate metabolic process, GO:0014001 - sclerenchyma cell differentiation, GO:0005634 - nucleus	TO:0000286 - submergence sensitivity, TO:0000207 - plant height, TO:0000253 - seed dormancy, TO:0000166 - gibberellic acid sensitivity, TO:0000291 - carbohydrate content, TO:0000074 - blast disease, TO:0000495 - chlorophyll content, TO:0000276 - drought tolerance, TO:0000470 - vascular tissue related trait, TO:0000303 - cold tolerance, TO:0000135 - leaf length, TO:0000175 - bacterial blight disease resistance, TO:0000566 - stomatal frequency, TO:0000615 - abscisic acid sensitivity	
7355	HSA32	Hsa32, OsPPS1	HEAT-STRESS-ASSOCIATED 32KD PROTEIN	heat-stress-associated 32-kD protein, rice ortholog of Hsa32, Hsa32 homolog, phosphosulfolactate synthase 1	HEAT-STRESS-ASSOCIATED 32KD PROTEIN		6	AY623907. LOC_Os06g46900. an OsHIR1-interacting protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0682900 	LOC_Os06g46900.1, LOC_Os06g46900.2, LOC_Os06g46900.3, LOC_Os06g46900.4				GO:0006950 - response to stress, GO:0019295 - coenzyme M biosynthetic process, GO:0010608 - posttranscriptional regulation of gene expression, GO:0010286 - heat acclimation, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
7356	HSP70	OsHSP70, OsEnS-45, EnS-45	HEAT SHOCK PROTEIN 70KD	endosperm-specific gene 45	HEAT SHOCK PROTEIN 70KD		3		 Tolerance and resistance - Stress tolerance	Os03g0277300	LOC_Os03g16920.1				GO:0009408 - response to heat, GO:0042026 - protein refolding, GO:0003773 - heat shock protein activity	TO:0000259 - heat tolerance	
7360	MCM10	OsMCM10	MINI-CHROMOSOME MAINTENANCE PROTEIN 10	mini-chromosome maintenance protein 10	MINI-CHROMOSOME MAINTENANCE PROTEIN 10		9	putative MCM10 homologs in rice.LOC_Os09g36820	 Biochemical character	Os09g0539400	LOC_Os09g36820.1				GO:0005524 - ATP binding, GO:0006260 - DNA replication, GO:0003677 - DNA binding		
7361	MCM8	OsMCM8	MINI-CHROMOSOME MAINTENANCE PROTEIN 8	mini-chromosome maintenance protein 8	MINI-CHROMOSOME MAINTENANCE PROTEIN 8		5		 Biochemical character	Os05g0464100	LOC_Os05g38850.1				GO:0006260 - DNA replication, GO:0005524 - ATP binding, GO:0003677 - DNA binding		
7362	MCM9	OsMCM9	MINI-CHROMOSOME MAINTENANCE PROTEIN 9	mini-chromosome maintenance protein 9	MINI-CHROMOSOME MAINTENANCE PROTEIN 9		6	LOC_Os06g11500	 Biochemical character	Os06g0218500	LOC_Os06g11500.1				GO:0005524 - ATP binding, GO:0006260 - DNA replication, GO:0003677 - DNA binding		
7363	MEL1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c	MEIOSIS ARRESTED AT LEPTOTENE 1	MEIOSIS ARRESTED AT LEPTOTENE1, Protein argonaute MEL1, Protein MEIOSIS ARRESTED AT LEPTOTENE 1	PROTEIN ARGONAUTE MEL1	mel1	3	Argonaute (AGO) family protein. Q851R2. PO:0020047; microsporocyte ; PO:0006015; female archesporial cell ; PO:0009049; inflorescence ; PO:0006442; anther (sensu Poaceae) ; PO:0006014; male archesporial cell ; PO:0006444; microsporangium (sensu Poaceae) ; PO:0006463; megasporocyte (sensu Poaceae) ; PO:0000018; ovule primordium. GRO:0007157; panicle development. a germline-specific Argonaute protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0800200	LOC_Os03g58600.1	GR:0080042			GO:0045836 - positive regulation of meiosis, GO:0003676 - nucleic acid binding, GO:0009561 - megagametogenesis, GO:0033169 - histone H3-K9 demethylation, GO:0035197 - siRNA binding, GO:0005739 - mitochondrion, GO:0007140 - male meiosis, GO:0007143 - female meiosis, GO:0055046 - microgametogenesis, GO:0007281 - germ cell development, GO:0006396 - RNA processing, GO:0048236 - plant-type spore development, GO:0009555 - pollen development, GO:0010152 - pollen maturation, GO:0031047 - gene silencing by RNA, GO:0005737 - cytoplasm, GO:0005731 - nucleolus organizer region, GO:0005730 - nucleolus	TO:0000358 - female sterility, TO:0000053 - pollen sterility, TO:0000436 - spikelet sterility, TO:0000727 - sporogenesis, TO:0000353 - aborted at pollen maturity stage, TO:0000729 - meiotic cell cycle trait, TO:0000437 - male sterility	PO:0007600 - floral organ differentiation stage , PO:0006014 - male archesporial cell , PO:0006015 - female archesporial cell , PO:0025277 - pollen sac , PO:0000018 - ovule primordium , PO:0020047 - microsporocyte , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0000431 - megasporocyte , PO:0001016 - L mature pollen stage , PO:0001007 - pollen development stage 
7370	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2, DLN5, OsDLN5, OsBTBA1, BTBA1	NPR1 HOMOLOG 1	NPR1-like 1, NPR1 homologue 1, nonexpresser of PR genes 1, Arabidopsis NPR1 homolog 1, non-expressor of pathogenesis-related gene 1, Arabidopsis NPR1 homologue 1, pathogenesis-related gene 2, nonexpressor of PR genes 1, Nonexpressor of Pathogenesis-Related Genes1, NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1, NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1, non-expressor pathogenesis-related 1, NONEXPRESSOR OF PR1, DLN repressor 5, DLN motif protein 5, BTB-type E3 ubiquitin ligase A1	NPR1 HOMOLOG 1	osnpr1, osnpr1-1, osnpr1-2, Osnpr1	1	a rice ortholog of Arabidopsis thaliana NPR1 (NON-EXPRESSOR OF PR 1). AY923983. DQ450948. GU722159, GU722160. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway. XP_015622114.1	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Character as QTL - Yield and productivity,  Tolerance and resistance - Insect resistance	Os01g0194300	LOC_Os01g09800.1				GO:0002215 - defense response to nematode, GO:0009627 - systemic acquired resistance, GO:0002237 - response to molecule of bacterial origin, GO:0009863 - salicylic acid mediated signaling pathway, GO:0006952 - defense response, GO:0005829 - cytosol, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009609 - response to symbiotic bacterium, GO:0016563 - transcription activator activity, GO:0009625 - response to insect, GO:0009408 - response to heat, GO:0009734 - auxin mediated signaling pathway, GO:0051607 - defense response to virus, GO:0009611 - response to wounding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0002213 - defense response to insect, GO:0031348 - negative regulation of defense response, GO:0006950 - response to stress, GO:0050832 - defense response to fungus, GO:0009682 - induced systemic resistance, GO:0010942 - positive regulation of cell death, GO:0010200 - response to chitin, GO:0042742 - defense response to bacterium, GO:0048364 - root development, GO:0009814 - defense response, incompatible interaction, GO:0008219 - cell death, GO:0010112 - regulation of systemic acquired resistance	TO:0000401 - plant growth hormone sensitivity, TO:0000346 - tiller number, TO:0000384 - nematode damage resistance, TO:0000063 - mimic response, TO:0000207 - plant height, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000181 - seed weight, TO:0000445 - seed number, TO:0000656 - root development trait, TO:0000163 - auxin sensitivity, TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity	PO:0007520 - root development stage , PO:0007089 - stem elongation stage 
7371	NOC3	NOC3	NUCLEOLAR COMPLEX-ASSOCIATED PROTEIN 3	Nucleolar complex-associated protein 3	NUCLEOLAR COMPLEX-ASSOCIATED PROTEIN 3		6		 Biochemical character	Os06g0498500	LOC_Os06g30320.1				GO:0006260 - DNA replication		
7373	NPP1	OsNPP1, OsPAP27b, PAP27B	NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1	Nucleotide Pyrophosphatase/Phosphodiesterase 1, Purple acid phosphatase 27b	NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1	nnp1	8	A nucleotide pyrophosphatase/phosphodiesterase enzyme. NPP1 exhibits a hydrolyzing activity toward ADP-glucose linked to the starch biosynthesis. AB100451.	 Seed - Physiological traits - Storage substances,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0531000	LOC_Os08g41880.1				GO:0005618 - cell wall, GO:0004528 - phosphodiesterase I activity, GO:0004551 - nucleotide diphosphatase activity, GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding, GO:0001666 - response to hypoxia	TO:0000207 - plant height, TO:0000696 - starch content, TO:0000233 - root volume, TO:0000015 - oxygen sensitivity	
7374	NTRC	OsNTRC, NtrC, OsGRL15	CHLOROPLAST NADPH THIOREDOXIN REDUCTASE	NADPH thioredoxin reductase, GRX-like protein 15, glutaredoxin-like protein 15, chloroplastic type NTR, chloroplastic type NADPH-dependent thioredoxin reductase	CHLOROPLAST NADPH THIOREDOXIN REDUCTASE		7	AJ582621. Q70G58.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0657900	LOC_Os07g46410.1				GO:0008047 - enzyme activator activity, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0050660 - FAD binding, GO:0016117 - carotenoid biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009570 - chloroplast stroma, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0042744 - hydrogen peroxide catabolic process, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0010581 - regulation of starch biosynthetic process, GO:0019430 - removal of superoxide radicals, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0009507 - chloroplast, GO:0010027 - thylakoid membrane organization	TO:0002657 - oxidative stress	
7375	NYC1	nyc1, OsNYC1	NON-YELLOW COLORING 1	Chlorophyl b degrading enzyme, Chlase, Non-Yellow Coloring 1, non-yellow coloring1, Probable chlorophyll(ide) b reductase NYC1, chloroplastic, Protein NON-YELLOW COLORING 1, short-chain dehydrogenase/reductase NYC1	SHORT-CHAIN DEHYDROGENASE/REDUCTASE NYC1	nyc1-1, nyc1-2	1	AB255025. Q5N800. nyc1 mutant shows the stay-green phenotype.  MEMBRANE-LOCALIZED SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR). GRO:0007047; 02-seedling.	 Vegetative organ - Leaf,  Biochemical character,  Coloration - Chlorophyll	Os01g0227100	LOC_Os01g12710.2, LOC_Os01g12710.1	GR:0101290			GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0016491 - oxidoreductase activity, GO:0042170 - plastid membrane, GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence, GO:0055114 - oxidation reduction, GO:0034256 - chlorophyll(ide) b reductase activity, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0009535 - chloroplast thylakoid membrane, GO:0005488 - binding	TO:0002712 - stay green trait, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0000599 - enzyme activity	PO:0020104 - leaf sheath , PO:0020122 - inflorescence axis , PO:0009038 - palea , PO:0009025 - vascular leaf , PO:0001054 - 4 leaf senescence stage , PO:0009037 - lemma 
7379	KRP1	OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1, OsKRP1	KIP-RELATED PROTEIN 1	Cyclin-dependent kinase inhibitor 1, KIP-related protein 1, inhibitor of cyclin-dependent kinase 1	KIP-RELATED PROTEIN 1		2	A2X9W8(indica), Q6Z6G5(japonica). DQ229362. AU075786.	 Biochemical character	Os02g0762400	LOC_Os02g52480.1				GO:0005634 - nucleus, GO:0051301 - cell division, GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0007067 - mitosis, GO:0007050 - cell cycle arrest		
7380	BOR1	OsBOR1	EFFLUX BORON TRANSPORTER 1	Boron transporter 1	EFFLUX BORON TRANSPORTER 1	osbor1-1, osbor1-2	12		 Biochemical character	Os12g0566000	LOC_Os12g37840.1, LOC_Os12g37840.2	GR:0101271			GO:0046715 - boron transporter activity, GO:0046713 - boron transport, GO:0016021 - integral to membrane, GO:0005452 - inorganic anion exchanger activity		
7385	ACO7	OsACO7	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7	ACC oxidase 7	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7		1	GO:1904585: response to putrescine.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0580500	LOC_Os01g39860.1				GO:0009617 - response to bacterium, GO:0009266 - response to temperature stimulus, GO:0042742 - defense response to bacterium, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009693 - ethylene biosynthetic process	TO:0000175 - bacterial blight disease resistance, TO:0000432 - temperature response trait	
7386	BRL1	OsBRL1	BRI1 LIKE  1	BRI1-like receptor kinase 1	BRI1-LIKE RECEPTOR KINASE 1 		9	BAD34326. putative systemin receptor SR160 precursor, Brassinosteroid LRR receptor kinase. a plasma membrane-located BR receptor. a rice ortholog of Arabidopsis BRL3.	 Other	Os09g0293500	LOC_Os09g12240.1				GO:0005524 - ATP binding, GO:0009729 - detection of brassinosteroid stimulus, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0004872 - receptor activity, GO:0009742 - brassinosteroid mediated signaling		
7387	BRL3	OsBRL3	BRI1 LIKE 3	BRI1-like receptor kinase 3	BRI1-LIKE RECEPTOR KINASE 3 		8	BAD01717. putative brassinosteroid receptor, leucine-rich repeat receptor-like protein kinase. a plasma membrane-located BR receptor.	 Other	Os08g0342300	LOC_Os08g25380.1				GO:0009729 - detection of brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0004872 - receptor activity, GO:0004672 - protein kinase activity		
7388	CIPK01	OsCIPK01, CIPK1, OsCIPK1, OsSnRK3.3, SnRK3.3	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1	CBL-interacting protein kinase 1, Sucrose nonfermenting-1-related protein kinase 3.3	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1	cipk1, cr-cipk1	1	EC=2.7.11.1 Q9LGV5. AU056086, AU056087.	 Biochemical character,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os01g0292200	LOC_Os01g18800.5, LOC_Os01g18800.4, LOC_Os01g18800.3, LOC_Os01g18800.1, LOC_Os01g18800.2				GO:0006468 - protein amino acid phosphorylation, GO:0004713 - protein tyrosine kinase activity, GO:0009413 - response to flooding, GO:0030307 - positive regulation of cell growth, GO:0009409 - response to cold, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009740 - gibberellic acid mediated signaling	TO:0020033 - glume length, TO:0000590 - grain weight, TO:0000303 - cold tolerance, TO:0020034 - glume width, TO:0000432 - temperature response trait, TO:0000734 - grain length, TO:0000391 - seed size, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000114 - flooding related trait, TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0000382 - 1000-seed weight	
7389	CIPK02	OsCIPK02, CIPK2, OsCIPK2, OsSnRK3.26, SnRK3.26	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2	CBL-interacting protein kinase 2, Sucrose nonfermenting-1-related protein kinase 3.26	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2		7	EC=2.7.11.1 Q7X996. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation. TO:0020100: nitrate uptake. TO:0020103: adventitious root length.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0678600	LOC_Os07g48100.1				GO:0006995 - cellular response to nitrogen starvation, GO:0044136 - development of symbiont on or near host rhizosphere, GO:0042594 - response to starvation, GO:0019740 - nitrogen utilization, GO:0005524 - ATP binding, GO:0031667 - response to nutrient levels, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0042128 - nitrate assimilation	TO:0001027 - net photosynthetic rate, TO:0000495 - chlorophyll content, TO:0000152 - panicle number, TO:0000455 - seed set percent, TO:0000011 - nitrogen sensitivity, TO:0000371 - yield trait, TO:0000644 - relative root dry weight, TO:0000636 - relative shoot dry weight	
7390	CIPK03	OsCIPK03, CIPK3, OsCIPK3, OsSnRK3.27, SnRK3.27	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 3	CBL-interacting protein kinase 3, Sucrose nonfermenting-1-related protein kinase 3.27	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 3		7	EC=2.7.11.1 Q8LIG4.	 Biochemical character	Os07g0687000	LOC_Os07g48760.1				GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0005739 - mitochondrion, GO:0005524 - ATP binding		
7391	CIPK04	OsCIPK04, CIPK4, OsCIPK4, OsSnRK3.35, SnRK3.35	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 4	CBL-interacting protein kinase 4, Sucrose nonfermenting-1-related protein kinase 3.35	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 4		12	EC=2.7.11.1 Q2QMI0.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0603700	LOC_Os12g41090.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding, GO:0009409 - response to cold, GO:0006468 - protein amino acid phosphorylation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
7392	CIPK05	OsCIPK05, CIPK5, OsCIPK5, OsSTA7, OsSnRK3.2, SnRK3.2	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5	CBL-interacting protein kinase 5, Sucrose nonfermenting-1-related protein kinase 3.2	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5		1	EC=2.7.11.1 Q9LWM4. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0206700	LOC_Os01g10890.1				GO:0009413 - response to flooding, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0031348 - negative regulation of defense response, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding	TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000203 - bacterial leaf streak disease resistance	PO:0009066 - anther 
7393	CIPK06	OsCIPK06, CIPK6, OsCIPK6, OsSnRK3.28, SnRK3.28	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 6	CBL-interacting protein kinase 6, Sucrose nonfermenting-1-related protein kinase 3.28	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 6		8	EC=2.7.11.1 Q6Z9F4.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0441100	LOC_Os08g34240.1				GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
7394	CIPK07	OsCIPK07, CIPK7, OsCIPK7, OsSnRK3.13, SnRK3.13	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 7	CBL-interacting protein kinase 7, Sucrose nonfermenting-1-related protein kinase 3.13	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 7		3	EC=2.7.11.1 Q75GK4. GO:0035584: calcium-mediated signaling using intracellular calcium source.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0634400	LOC_Os03g43440.1				GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0016048 - detection of temperature stimulus, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0019722 - calcium-mediated signaling, GO:0007165 - signal transduction, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
7395	CIPK08	OsCIPK08, CIPK8, OsCIPK8, OsSnRK3.4, SnRK3.4	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 8	CBL-interacting protein kinase 8, Sucrose nonfermenting-1-related protein kinase 3.4	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 8	cipk8	1	EC=2.7.11.1 Q5JLD8.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0536000	LOC_Os01g35184.2, LOC_Os01g35184.1				GO:0009413 - response to flooding, GO:0060359 - response to ammonium ion, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030145 - manganese ion binding	TO:0000114 - flooding related trait	
7396	CIPK09	OsCIPK09, CIPK9, OsCIPK9, OsSnRK3.10, SnRK3.10	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 9	CBL-interacting protein kinase 9, Sucrose nonfermenting-1-related protein kinase 3.10	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 9	cipk9	3	EC=2.7.11.1 Q10SC8.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0126800	LOC_Os03g03510.2, LOC_Os03g03510.1				GO:0004674 - protein serine/threonine kinase activity, GO:0060359 - response to ammonium ion, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000227 - root length	
7397	CIPK10	OsCIPK10, OsSnRK3.12, SnRK3.12	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10	CBL-interacting protein kinase 10, Sucrose nonfermenting-1-related protein kinase 3.12	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10		3	EC=2.7.11.1 Q10LQ2.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0339900	LOC_Os03g22050.4, LOC_Os03g22050.1, LOC_Os03g22050.2, LOC_Os03g22050.3				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	
7398	CIPK11	OsCIPK11, OsMSURPK2, MSURPK2, OsSnRK3.7, SnRK3.7	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11	CBL-interacting protein kinase 11, Sucrose nonfermenting-1-related protein kinase 3.7	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11		1	EC=2.7.11.1 Q0JI49.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0824600	LOC_Os01g60910.1, LOC_Os01g60910.2				GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity		
7400	CIPK13	OsCIPK13, OsSnRK3.1, SnRK3.1	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 13	Putative CBL-interacting protein kinase 13, Sucrose nonfermenting-1-related protein kinase 3.1	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 13		1	EC=2.7.11.1 Q5QNM6.	 Biochemical character	Os01g0206300	LOC_Os01g10870.1				GO:0007165 - signal transduction, GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		
7401	CIPK14	OsCIPK14, OsSnRK3.33, SnRK3.33	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14	CBL-interacting protein kinase 14, Sucrose nonfermenting-1-related protein kinase 3.33	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14	cipk14	12	EC=2.7.11.1 Q2QYM3. AB264036.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0113500	LOC_Os12g02200.2, LOC_Os12g02200.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0009413 - response to flooding, GO:0060359 - response to ammonium ion, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity	TO:0000255 - sheath blight disease resistance, TO:0000114 - flooding related trait	
7402	CIPK15	OsCIPK15, OsSnRK3.31, SnRK3.31	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15	CBL-interacting protein kinase 15, Sucrose nonfermenting-1-related protein kinase 3.31, Calcineurin B-like protein-interacting protein kinase 15	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15		11	EC=2.7.11.1 Q2RBF0. AB264037. GO:1900426: positive regulation of defense response to bacterium. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0113700	LOC_Os11g02240.1				GO:0019722 - calcium-mediated signaling, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0009610 - response to symbiotic fungus, GO:0030145 - manganese ion binding, GO:0042742 - defense response to bacterium, GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000114 - flooding related trait	
7403	CIPK16	OsCIPK16, OsSnRK3.29, SnRK3.29	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16	CBL-interacting protein kinase 16, Sucrose nonfermenting-1-related protein kinase 3.29	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16		9	EC=2.7.11.1 Q6ERS4.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0418000	LOC_Os09g25090.1				GO:0006468 - protein amino acid phosphorylation, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
7404	CIPK17	OsCIPK17, OsSnRK3.14, SnRK3.14	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17	CBL-interacting protein kinase 17, Sucrose nonfermenting-1-related protein kinase 3.14	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17		5	EC=2.7.11.1 Q75L42. GO:1900140: regulation of seedling development. GO:0098542: defense response to other organism.	 Character as QTL - Plant growth activity,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os05g0136200	LOC_Os05g04550.1				GO:0006468 - protein amino acid phosphorylation, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0010187 - negative regulation of seed germination, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0046686 - response to cadmium ion, GO:0007165 - signal transduction, GO:0009651 - response to salt stress, GO:0030145 - manganese ion binding, GO:0005524 - ATP binding	TO:0000112 - disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000227 - root length, TO:0000578 - root fresh weight, TO:0000352 - plant dry weight	
7405	CIPK18	OsCIPK18, OsSnRK3.16, SnRK3.16	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18	CBL-interacting protein kinase 18, Sucrose nonfermenting-1-related protein kinase 3.16	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18		5	EC=2.7.11.1 Q5W736.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0332300	LOC_Os05g26820.1				GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0030145 - manganese ion binding, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
7406	PK4	OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20	PROTEIN KINASE 4	protein kinase 4, CBL-interacting protein kinase 19, CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 19, Sucrose nonfermenting-1-related protein kinase 3.20	PROTEIN KINASE 4		5	EC=2.7.11.1 Q68Y49. AB011967.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0514200	LOC_Os05g43840.1				GO:0007165 - signal transduction, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000114 - flooding related trait	
7407	CIPK20	OsCIPK20, OsSnRK3.15, SnRK3.15	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 20	CBL-interacting protein kinase 20, Sucrose nonfermenting-1-related protein kinase 3.15	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 20		5	EC=2.7.11.1 Q60EY8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0208100	LOC_Os05g11790.1				GO:0030145 - manganese ion binding, GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction	TO:0000114 - flooding related trait	
7408	CIPK21	OsCIPK21, OsSnRK3.24, SnRK3.24	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 21	CBL-interacting protein kinase 21, Sucrose nonfermenting-1-related protein kinase 3.24	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 21		7	EC=2.7.11.1 Q0D4B2.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0637000	LOC_Os07g44290.1				GO:0007165 - signal transduction, GO:0009536 - plastid, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
7409	CIPK22	OsCIPK22, OsSnRK3.17, SnRK3.17	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 22	CBL-interacting protein kinase 22, Sucrose nonfermenting-1-related protein kinase 3.17	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 22		5	EC=2.7.11.1 Q5KQF5.	 Biochemical character	Os05g0334750	LOC_Os05g26940.1				GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding		
7410	CIPK23	OsCIPK23, Os-CIPK23, OsSnRK3.23, SnRK3.23	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23	CBL-interacting protein kinase 23, CBL-Interacting Protein Kinase23, Sucrose nonfermenting-1-related protein kinase 3.23	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23	cipk23, oscipk23, oscipk23-18, oscipk23-23	7	EC=2.7.11.1 Q6ZLP5.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0150700	LOC_Os07g05620.2, LOC_Os07g05620.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0050687 - negative regulation of defense response to virus, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0060359 - response to ammonium ion, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding, GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus	TO:0000207 - plant height, TO:0000514 - potassium uptake, TO:0000276 - drought tolerance, TO:0001034 - relative plant height, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
7412	SOS2	CIPK24, OsCIPK24, OsSOS2, OsSnRK3.22, SnRK3.22	SALT OVERLY SENSITIVE 2	CBL-interacting protein kinase 24, salt overly sensitive 2, low-cesium rice mutant 1, Sucrose nonfermenting-1-related protein kinase 3.22	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 24	lcs1	6	EC=2.7.11.1 Q69Q47. DQ248963 (indica).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0606000	LOC_Os06g40370.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009705 - plant-type vacuole membrane, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding	TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009005 - root , PO:0000025 - root tip 
7413	CIPK25	OsCIPK25, OsSnRK3.21, SnRK3.21	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 25	CBL-interacting protein kinase 25, Sucrose nonfermenting-1-related protein kinase 3.21	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 25		6	EC=2.7.11.1 Q5Z6X0.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0543400	LOC_Os06g35160.1				GO:0030145 - manganese ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
7414	CIPK26	OsCIPK26, OsSnRK3.8, SnRK3.8	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 26	CBL-interacting protein kinase 26, Sucrose nonfermenting-1-related protein kinase 3.8	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 26		2	EC=2.7.11.1 Q6H7U5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0161000	LOC_Os02g06570.1, LOC_Os02g06570.2				GO:0009409 - response to cold, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0030145 - manganese ion binding	TO:0000303 - cold tolerance	
7415	CIPK27	OsCIPK27, OsSnRK3.30, SnRK3.30	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 27	Putative CBL-interacting protein kinase 27, Sucrose nonfermenting-1-related protein kinase 3.30	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 27		9	EC=2.7.11.1 Q6ERS0.	 Biochemical character	Os09g0418500	LOC_Os09g25100.1, LOC_Os09g25110.1				GO:0030145 - manganese ion binding, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		
7416	CIPK28	OsCIPK28, OsSnRK3.18, SnRK3.18	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 28	CBL-interacting protein kinase 28, Sucrose nonfermenting-1-related protein kinase 3.18	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 28		5	EC=2.7.11.1 A3B529.	 Biochemical character	Os05g0476350	LOC_Os05g39870.1				GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding		
7417	CIPK29	OsCIPK29, OsSnRK3.25, SnRK3.25	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 29	CBL-interacting protein kinase 29, Sucrose nonfermenting-1-related protein kinase 3.25	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 29		7	EC=2.7.11.1 Q7XIW5.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0678300	LOC_Os07g48090.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0030145 - manganese ion binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
7418	CIPK30	OsCIPK30, OsSnRK3.5, SnRK3.5	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30	CBL-interacting protein kinase 30, Sucrose nonfermenting-1-related protein kinase 3.5	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30		1	EC=2.7.11.1 Q5JLQ9.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0759200	LOC_Os01g55440.1				GO:0006468 - protein amino acid phosphorylation, GO:0030145 - manganese ion binding, GO:0005524 - ATP binding, GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction	TO:0000114 - flooding related trait	
7420	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK	DOESN'T MAKE INFECTIONS 3	DOESN'T MAKE INFECTIONS3, calcium and calmodulin-dependent protein kinase 1, Ca2+/calmodulin (CaM)-dependent protein kinase, CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE		dmi3, osdmi3, osccamk	5	Ca2+/calmodulin-dependent protein kinase. AC097175. Q6AVM3. GO:2000280: regulation of root development. 	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0489900	LOC_Os05g41090.1				GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004683 - calmodulin-dependent protein kinase activity, GO:0009610 - response to symbiotic fungus, GO:0009414 - response to water deprivation, GO:0009845 - seed germination, GO:0019722 - calcium-mediated signaling, GO:0016021 - integral to membrane, GO:0010726 - positive regulation of hydrogen peroxide metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009734 - auxin mediated signaling pathway, GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0043408 - regulation of MAPKKK cascade, GO:0009738 - abscisic acid mediated signaling	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000516 - relative root length, TO:0000656 - root development trait, TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0002672 - auxin content	PO:0007057 - 0 seed germination stage , PO:0007520 - root development stage 
7422	HIPM	OsHIPM	HRPN-INTERACTING PROTEIN FROM MALUS	Oryza sativa HrpN-interacting protein from Malus, HIPM ortholog											GO:0045926 - negative regulation of growth		
7423	HKT7	OsHKT7, OsHKT1;4, HKT1;4	HIGH-AFFINITY K+ TRANSPORTER 7	Oryza sativa High-affinity K+ Transporter 7, Probable cation transporter HKT7	HIGH-AFFINITY K+ TRANSPORTER 7		4	Q7XPF7, AJ491853. JF920143, JF920144, JF920145, JF920146, JF920142. OsHKT1;4 in Wei et al. 2024.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0607600	LOC_Os04g51830.1				GO:0015079 - potassium ion transmembrane transporter activity, GO:0031402 - sodium ion binding, GO:0034059 - response to anoxia, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport, GO:0009741 - response to brassinosteroid stimulus, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity	PO:0009006 - shoot system , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009047 - stem 
7424	HMA9	OsHMA9, oshma9-1, oshma9-2, HMA9, OsHMP33, HMP33	HEAVY METAL ATPASE 9	Oryza sativa heavy metal ATPase 9, HEAVY METAL ATPASE 9, heavy metal P-Type ATPase 9, Heavy metal-associated protein 33	HEAVY METAL ATPASE 9		6	GO:0035434:copper ion transmembrane transport. TO:0020096: mineral and ion transport trait. TO:0006059: cadmium content trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0665800	LOC_Os06g45500.1				GO:0016021 - integral to membrane, GO:0046873 - metal ion transmembrane transporter activity, GO:0046688 - response to copper ion, GO:0070574 - cadmium ion transmembrane transport, GO:0015691 - cadmium ion transport, GO:0010119 - regulation of stomatal movement, GO:0016020 - membrane, GO:0046686 - response to cadmium ion, GO:0009873 - ethylene mediated signaling pathway, GO:0010288 - response to lead ion, GO:0005794 - Golgi apparatus, GO:0043682 - copper-transporting ATPase activity, GO:0010043 - response to zinc ion	TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	
7428	HPL3	OsHPL3, CYP74B2, OsCYP74B2	HYDROPEROXIDE LYASE 3		HYDROPEROXIDE LYASE 3	hpl3-1	2	AY340220.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Biochemical character,  Tolerance and resistance - Insect resistance	Os02g0110200	LOC_Os02g02000.1				GO:0031407 - oxylipin metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0016829 - lyase activity, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009695 - jasmonic acid biosynthetic process, GO:0009055 - electron carrier activity, GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0020037 - heme binding, GO:0009941 - chloroplast envelope, GO:0010597 - green leaf volatile biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0051607 - defense response to virus	TO:0000175 - bacterial blight disease resistance, TO:0000424 - brown planthopper resistance, TO:0000454 - stem borer resistance, TO:0002668 - jasmonic acid content, TO:0000396 - grain yield, TO:0000148 - viral disease resistance, TO:0000063 - mimic response, TO:0000172 - jasmonic acid sensitivity, TO:0000020 - black streak dwarf virus resistance	
7429	IAMT1	OsIAMT1, OsSABATH4	INDOL-3-ACETIC ACID METHYTRANSFERASE 1	Oryza sativa indole-3-acetic acid methyltransferase 1	INDOL-3-ACETIC ACID METHYLTRANSFERASE 1		4	EU375746. Q0J998. SABATH methyltransferase Group D.	 Biochemical character	Os04g0665200	LOC_Os04g56950.1				GO:0051749 - indole acetic acid carboxyl methyltransferase activity, GO:0046872 - metal ion binding, GO:0032259 - methylation, GO:0008168 - methyltransferase activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0010252 - auxin homeostasis		
7431	MADS51	OsMADS51, OsMADS65, MADS65, qHd1, DLN36, OsDLN36	MADS BOX GENE 51	MADS box gene51, DLN repressor 36, DLN motif protein 36	MADS-BOX TRANSCRIPTION FACTOR 51		1	OsMADS65 in Aora et al. 2007. day-length independent flowering QTL, qHd1.	 Character as QTL - Yield and productivity,  Seed - Morphological traits,  Other,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0922800	LOC_Os01g69850.1				GO:0009409 - response to cold, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat	TO:0000303 - cold tolerance, TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0000432 - temperature response trait, TO:0000259 - heat tolerance, TO:0002616 - flowering time, TO:0000137 - days to heading	
7432	MIR156B	miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p	MICRORNA156B	micro RNA 156b, microRNA156b, osa-miRNA156b			1	OsmiR156b and OsmiR156c are mapped to the same transcription unit (accession no. AK110797). miRBase accession: MI0000654. PO:0000009; cultured callus ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007192; callus promotion ; GRO:0007193; plantlet regeneration. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. EU004233-EU004275 (Japonica, Indica and O. rufipogon)LM383043 LM379142	 Other,  Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity			GR:0100702			GO:0016442 - RNA-induced silencing complex, GO:0032350 - regulation of hormone metabolic process, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0010050 - vegetative phase change, GO:0050832 - defense response to fungus	TO:0000476 - growth hormone content, TO:0000357 - growth and development trait, TO:0000074 - blast disease	PO:0000009 - cultured plant callus , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009005 - root 
7433	SDT	miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p	SEMIDWARF AND HIGH-TILLERING	micro RNA 156h, microRNA156h, osa-miRNA156h, semidwarf and high-tillering		sdt	6	Precursors of OsmiR156h and OsmiR156j are from the same transcription unit AK103769(Os06g0649600). miRBase accession: MI0000660. PO:0000009; cultured callus ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007192; callus promotion ; GRO:0007193; plantlet regeneration. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM383293, LM383292. OsmiR156h is the sequence responsible for the sdt QTL (Zhao et al. 2015).	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Other,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance			GR:0100709			GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0007623 - circadian rhythm	TO:0000329 - tillering ability, TO:0000068 - lodging incidence, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000050 - inflorescence branching, TO:0000207 - plant height	PO:0009005 - root , PO:0009049 - inflorescence , PO:0000009 - cultured plant callus , PO:0009025 - vascular leaf 
7436	SOS1	OsSOS1, OsNHA1, NHA1, SOS1/NHX7, NHX7, OsNHX7	SALT OVERLY SENSITIVE 1	Oryza sativa salt overly sensitive 1, Na+/H+ antiporter 1, Sodium/hydrogen antiporter 7			12	AY785147. Oryza sativa subsp. Indica: BGIOSGA035749, Oryza rufipogon: ORUFI12G22630, Oryza nivara: ONIVA12G18960, Oryza glaberrima: ORGLA12G0176700, Oryza barthii: OBART12G20310, Oryza glumipatula: OGLUM12G22080, Oryza punctata: OPUNC12G18600, Oryza brachyantha: OB12G27070. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0641100	LOC_Os12g44360.1, LOC_Os12g44360.2, LOC_Os12g44360.4, LOC_Os12g44360.3				GO:0010348 - lithium:hydrogen antiporter activity, GO:0010163 - high-affinity potassium ion import, GO:0010352 - lithium ion export, GO:0055075 - potassium ion homeostasis, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0055085 - transmembrane transport, GO:0055078 - sodium ion homeostasis, GO:0042542 - response to hydrogen peroxide, GO:0016021 - integral to membrane, GO:0015385 - sodium:hydrogen antiporter activity, GO:0009414 - response to water deprivation, GO:0006814 - sodium ion transport, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0025034 - leaf , PO:0000025 - root tip , PO:0020104 - leaf sheath , PO:0009006 - shoot system 
7437	SPT16	Osspt16	SUPPRESSOR OF TY16	Oryza sativa suppressor of Ty 16 (homolog of the yeast. spt16 gene), FACT complex subunit SPT16, Facilitates chromatin transcription complex subunit SPT16	FACT COMPLEX SUBUNIT SPT16		4	Q7X923.	 Other	Os04g0321600	LOC_Os04g25550.1				GO:0006260 - DNA replication, GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0006350 - transcription, GO:0045449 - regulation of transcription, GO:0006281 - DNA repair		
7438	YUCCA1	OsYUCCA1, OsYUC1, YUC1	YUCCA-LIKE GENE 1	(YUCCA-like gene)			1	an orthologue of AtYUCCA. TO:0001041: root yield. GO:1990110: callus formation.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os01g0645400	LOC_Os01g45760.1, LOC_Os01g45760.2				GO:0048830 - adventitious root development, GO:0051607 - defense response to virus, GO:0009609 - response to symbiotic bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0004499 - flavin-containing monooxygenase activity, GO:0046686 - response to cadmium ion, GO:0034059 - response to anoxia, GO:0009851 - auxin biosynthetic process, GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0009408 - response to heat	TO:0000084 - root number, TO:0000031 - silicon sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0002672 - auxin content, TO:0000259 - heat tolerance, TO:0001006 - adventitious root number, TO:0000276 - drought tolerance, TO:0000578 - root fresh weight, TO:0000615 - abscisic acid sensitivity, TO:0000428 - callus induction	PO:0009105 - inflorescence branch meristem , PO:0020103 - flag leaf 
7439	YUCCA2	OsYUCCA2, OsYUC2, YUC2	YUCCA-LIKE GENE 2	(YUCCA-like gene)			5	an orthologue of AtYUCCA.	 Biochemical character	Os05g0528600	LOC_Os05g45240.1				GO:0004499 - flavin-containing monooxygenase activity, GO:0009851 - auxin biosynthetic process		
7440	YUCCA3	OsYUCCA3, OsYUC3, YUC3	YUCCA-LIKE GENE 3	(YUCCA-like gene)			1	Os01g0732600 (in Ncbi and UniProt). an orthologue of AtYUCCA.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0732700	LOC_Os01g53200.1				GO:0016491 - oxidoreductase activity, GO:0004499 - flavin-containing monooxygenase activity, GO:0009851 - auxin biosynthetic process, GO:0009609 - response to symbiotic bacterium, GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
7441	YUCCA4	OsYUCCA4, OsYUC4, YUC4, YUCCA6, OsYUCCA6	YUCCA-LIKE GENE 4	(YUCCA-like gene)			1	an orthologue of AtYUCCA. YUCCA6 in Qin et al. 2020. TO:1000022: anther morphology trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0224700	LOC_Os01g12490.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity, GO:0051707 - response to other organism, GO:0009901 - anther dehiscence, GO:0009737 - response to abscisic acid stimulus, GO:0051607 - defense response to virus, GO:0048653 - anther development, GO:0042594 - response to starvation	TO:0002672 - auxin content, TO:0000148 - viral disease resistance, TO:0000657 - spikelet anatomy and morphology trait, TO:0000615 - abscisic acid sensitivity	PO:0001004 - anther development stage , PO:0001035 - G anther dehiscence stage , PO:0009066 - anther 
7442	YUCCA5	OsYUCCA5, OsYUC5, YUC5	YUCCA-LIKE GENE 5	(YUCCA-like gene)			12	an orthologue of AtYUCCA.	 Biochemical character	Os12g0512000	LOC_Os12g32750.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity		
7443	YUCCA6	OsYUCCA6, OsYUC6, YUC6	YUCCA-LIKE GENE 6	(YUCCA-like gene)			7	an orthologue of AtYUCCA. TO:0020106: Indole-3-acetic acid content.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0437000	LOC_Os07g25540.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity, GO:0051607 - defense response to virus, GO:0009266 - response to temperature stimulus, GO:0009629 - response to gravity	TO:0000432 - temperature response trait, TO:0002672 - auxin content, TO:0000020 - black streak dwarf virus resistance, TO:0002693 - gravity response trait	PO:0025275 - procambium , PO:0020148 - shoot apical meristem , PO:0005020 - vascular bundle , PO:0025127 - primordium 
7444	YUCCA7	OsYUCCA7, OsYUC7, OsYUC5, YUC5, YUC7	YUCCA-LIKE GENE 7	(YUCCA-like gene)			4	an orthologue of AtYUCCA. YUC5 in Yuan et al. 2019.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0128900	LOC_Os04g03980.1				GO:0046686 - response to cadmium ion, GO:0004499 - flavin-containing monooxygenase activity, GO:0009851 - auxin biosynthetic process, GO:0009629 - response to gravity	TO:0002693 - gravity response trait	PO:0009005 - root 
7446	POLA2	POLA2	POLYMERASE (DNA DIRECTED), ALPHA 2	Polymerase (DNA directed), alpha 2	POLYMERASE (DNA DIRECTED), ALPHA 2				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7447	POLA3	POLA3	POLYMERASE (DNA DIRECTED), ALPHA 3	Polymerase (DNA directed), alpha 3	POLYMERASE (DNA DIRECTED), ALPHA 3				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7448	POLA4	POLA4	POLYMERASE (DNA DIRECTED), ALPHA 4	Polymerase (DNA directed), alpha 4	POLYMERASE (DNA DIRECTED), ALPHA 4				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7449	POLD3	POLD3	POLYMERASE (DNA DIRECTED), DELTA 3	polymerase (DNA-directed), delta 3	POLYMERASE (DNA DIRECTED), DELTA 3				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7450	POLD4	POLD4	POLYMERASE (DNA DIRECTED), DELTA 4	polymerase (DNA-directed), delta 4	POLYMERASE (DNA DIRECTED), DELTA 4				 Biochemical character						GO:0003887 - DNA-directed DNA polymerase activity		
7451	PHB	prohibitin	PROHIBITIN	prohibitin	PROHIBITIN				 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0005739 - mitochondrion		
7452	PSF1	PSF1	PARTNER OF SLD FIVE 1	partner of Sld five 1	PARTNER OF SLD FIVE 1		5	LOC_Os05g37980, GINS comples.	 Biochemical character	Os05g0453900	LOC_Os05g37980.1				GO:0006260 - DNA replication		
7453	PSF2	OsPSF2, OsGINS, GINS	PARTNER OF SLD FIVE 2	"partner of Sld five 2, \"Go, Ichi, Nii, and San protein\""	PARTNER OF SLD FIVE 2		1	GINS complex. CMG helicase component.	 Biochemical character	Os01g0248600	LOC_Os01g14610.1, LOC_Os01g14610.2				GO:0000811 - GINS complex, GO:0006260 - DNA replication, GO:0000727 - double-strand break repair via break-induced replication, GO:0005634 - nucleus		
7454	PSF3	OsPSF3	PARTNER OF SLD FIVE 3	partner of Sld five 3	PARTNER OF SLD FIVE 3		8	GO:1902975: mitotic DNA replication initiation.	 Biochemical character	Os08g0274700	LOC_Os08g17294.1, LOC_Os08g17294.2				GO:0000811 - GINS complex, GO:0005634 - nucleus, GO:0006260 - DNA replication		
7457	RA2	ra2, Osra2, OsCrll4, CRL1L4, CRLL4, OsRA2	RAMOSA 2	ramosa2, ra2 ortholog, Crl1-like 4, OsRAMOSA2, OsRAMOSA 2			1	rice ortholog of maize ramosa2. AB200238. TO:0000847: panicle morphology trait. TO:0000784: inflorescence branch morphology trait.	 Other,  Reproductive organ - Inflorescence	Os01g0169400 	LOC_Os01g07480.2, LOC_Os01g07480.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0010199 - organ boundary specification between lateral organs and the meristem, GO:0010229 - inflorescence development, GO:0001709 - cell fate determination, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait, TO:0000630 - pedicel length, TO:0000184 - seed anatomy and morphology trait	PO:0006327 - spikelet meristem , PO:0009105 - inflorescence branch meristem , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
7460	RBOHB	rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB, OsRboh1, Rboh1	RESPIRATORY BURST OXIDASE HOMOLOG B	Respiratory Burst Oxidase Homolog B, Respiratory Burst Oxidase Homologue B, NADPH oxidase 1	RESPIRATORY BURST OXIDASE HOMOLOG B	osrbohB, CR-rbohb, CR-rbohb-3, CR-rbohb-4	1	Q5ZAJ0, Q6J2K5. AY603975. down-regulated after fertilization (Abiko et al. 2013). OsRboh1 in Xu et al. 2020. GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000379: positive regulation of reactive oxygen species metabolic process. GO:1903409: reactive oxygen species biosynthetic process. GO:0090333: regulation of stomatal closure. GO:0160020: positive regulation of ferroptosis. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Character as QTL - Germination,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os01g0360200	LOC_Os01g25820.2, LOC_Os01g25820.1				GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0016174 - NAD(P)H oxidase activity, GO:0043621 - protein self-association, GO:0016021 - integral to membrane, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0009734 - auxin mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009845 - seed germination, GO:0006952 - defense response, GO:0010266 - response to vitamin B1, GO:0005886 - plasma membrane, GO:0002238 - response to molecule of fungal origin, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0002679 - respiratory burst during defense response, GO:0043020 - NADPH oxidase complex, GO:0009687 - abscisic acid metabolic process, GO:0009733 - response to auxin stimulus, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010118 - stomatal movement, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009626 - plant-type hypersensitive response, GO:0004601 - peroxidase activity, GO:0009413 - response to flooding, GO:0009566 - fertilization, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000136 - relative water content, TO:0000382 - 1000-seed weight, TO:0000605 - hydrogen peroxide content, TO:0006002 - proline content, TO:0000172 - jasmonic acid sensitivity, TO:0000129 - false smut disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000430 - germination rate, TO:0002667 - abscisic acid content, TO:0000520 - stomatal closure rate, TO:0000095 - osmotic response sensitivity, TO:0000112 - disease resistance, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	PO:0025034 - leaf 
7464	RF1B	RF1b, Rf-1B, PPR7	RESTORATION OF FERTILITY 1B	pentatricopeptide repeat motif containing gene 7, PPR motif-containing gene 7			10	LOC_Os10g35640. DQ311054. AB470407, AB470409.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os10g0499500	LOC_Os10g35640.1				GO:0007275 - multicellular organismal development, GO:0005739 - mitochondrion	TO:0000497 - fertility restoration trait	
7467	RISBZ1	OsbZIP58, bZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1, RISBZ1/bZIP58	BZIP ACTIVATOR 1	bZIP transcription factor 58, rice seed b-Zipper 1, endosperm-specific gene 92, seed maturation factor 1, rice seed basic leucine zipper 1	BZIP ACTIVATOR 1	osbzip58, osbzip58-1, osbzip58-2	7	bZIP Activator. endosperm-specific basic Leu zipper (bZIP) trans-activator. AB053472, AB053475, Q9AR01. AB574188. GO:2000034: regulation of seed maturation.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Other	Os07g0182000	LOC_Os07g08420.1				GO:0010431 - seed maturation, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0012501 - programmed cell death, GO:0043565 - sequence-specific DNA binding, GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0009845 - seed germination	TO:0000490 - protein composition related trait, TO:0002661 - seed maturation, TO:0000432 - temperature response trait, TO:0000259 - heat tolerance, TO:0002653 - endosperm storage protein content, TO:0002673 - amino acid content	PO:0007632 - seed maturation stage , PO:0009089 - endosperm , PO:0005360 - aleurone layer , PO:0007057 - 0 seed germination stage 
7468	RNASEH2	RNASEH2	RIBONUCLEASE H2		RIBONUCLEASE H2				 Biochemical character						GO:0032299 - ribonuclease H2 complex, GO:0004523 - ribonuclease H activity		
7469	RPBF	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF, OsDOF7	PROLAMIN BOX BINDING FACTOR	rice (Oryza sativa) prolamin box binding factor, pyrimidine box-binding protein, endosperm-specific gene 34, Dof zinc factor 10, Dof transcription factor 10, DNA BINDING WITH ONE FINGER 10	PROLAMIN BOX BINDING FACTOR		2	AB028131, AP005510. OsDof10 in Lijavetzky et al. 2003 and Zhang et al. 2015. OsDOF1 in Wang et al. 2015. OsDOF7 in Ku et al. 2021, Liu et al. 2021. OsDOF3 in Shi et al. 2020.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Other,  Seed - Physiological traits - Storage substances	Os02g0252400	LOC_Os02g15350.1				GO:0006952 - defense response, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding	TO:0002673 - amino acid content, TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance	
7470	RSp29	RSp29	SR PROTEIN RSp29	SR protein	SR PROTEIN RSp29				 Biochemical character						GO:0000398 - nuclear mRNA splicing, via spliceosome		
7473	RTBP1	rtbp1, TBP1, OsTBP1	TELOMERE BINDING PROTEIN 1	RICE TELOMERE BINDING PROTEIN 1, Telomere Binding Protein 1, Telomere-binding protein 1, Protein RTBP1, rice telomere-binding protein 1, telomere binding protein-1	TELOMERE BINDING PROTEIN 1		2	Os02g0817800. LOC_Os02g57270. Q9LL45. PO:0009051; spikelet ; PO:0020047; microsporocyte ; PO:0020123; root cap ; PO:0009029; stamen. GRO:0007047; 02-seedling ; GRO:0007222; stamen stage ST5-6 ; GRO:0007043; 01-germination.	 Biochemical character	Os02g0817800	LOC_Os02g57270.2, LOC_Os02g57270.1	GR:0101270			GO:0042162 - telomeric DNA binding, GO:0003677 - DNA binding, GO:0003691 - double-stranded telomeric DNA binding, GO:0005634 - nucleus, GO:0042803 - protein homodimerization activity, GO:0007133 - meiotic anaphase I, GO:0005694 - chromosome, GO:0000781 - chromosome, telomeric region, GO:0005739 - mitochondrion, GO:0032204 - regulation of telomere maintenance, GO:0045449 - regulation of transcription	TO:0000730 - mitotic cell cycle trait, TO:0000430 - germination rate, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000207 - plant height	PO:0020047 - microsporocyte , PO:0020123 - root cap , PO:0009029 - stamen , PO:0009051 - spikelet 
7475	SCAMP1	Scamp1, OsSCAMP1	SECRETORY CARRIER MEMBRANE PROTEIN 1	rice (Oryza sativa) homolog of animal SCAMP1, secretory carrier-associated membrane protein 1	SECRETORY CARRIER MEMBRANE PROTEIN 1		7	LOC_Os07g37740. A2YMP7(indica). Q8H5X5(japonica).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0564600	LOC_Os07g37740.1	GR:0101184			GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0006897 - endocytosis, GO:0031410 - cytoplasmic vesicle, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0006898 - receptor-mediated endocytosis, GO:0005769 - early endosome	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	
7476	SCL26	SCL26	SR PROTEIN SCL26	SR protein, homolog of human SC35	SR PROTEIN SCL26				 Biochemical character						GO:0000398 - nuclear mRNA splicing, via spliceosome		
7477	SDG714	OsSDG714, OsSET5, OsSUVH4	SET DOMAIN GROUP PROTEIN 714	SET Domain Group Protein714, SET protein 5, SUVH Histone Methyltransferase 4	SET DOMAIN GROUP PROTEIN 714	ossdg714	1	a rice homolog of Su(var)3-9.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0927000	LOC_Os01g70220.1				GO:0005694 - chromosome, GO:0008270 - zinc ion binding, GO:0042393 - histone binding, GO:0046974 - histone methyltransferase activity (H3-K9 specific), GO:0046686 - response to cadmium ion, GO:0005634 - nucleus		
7485	SRP33B	SRp33b	SR PROTEIN SRP33B	SR protein, homolog of human ASF/SF2	SR PROTEIN SRP33B				 Biochemical character						GO:0000398 - nuclear mRNA splicing, via spliceosome		
7486	TAS3	TAS3	TRANS-ACTING siRNA3	TRANS-ACTING siRNA3					 Other						GO:0016246 - RNA interference		
7487	TDR	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1, OsMYC5, MYC5	TAPETUM DEGENERATION RETARDATION	tapetum degeneration retardation, basic helix loop helix 5, basic/helix-loop-helix 5, Myelocytomatosis oncogene transcription factor 5	BASIC HELIX LOOP HELIX 5	tdr	2	Q6YUS3.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0120500	LOC_Os02g02820.1	GR:0020145			GO:0048653 - anther development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0045449 - regulation of transcription, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0010208 - pollen wall assembly, GO:0010584 - pollen exine formation, GO:0046983 - protein dimerization activity, GO:0048658 - tapetal layer development, GO:0010234 - tapetal cell fate specification, GO:0003677 - DNA binding, GO:0009266 - response to temperature stimulus, GO:0048657 - tapetal cell differentiation, GO:0005634 - nucleus, GO:0030528 - transcription regulator activity, GO:0009555 - pollen development, GO:0048654 - anther morphogenesis, GO:0003682 - chromatin binding	TO:0000432 - temperature response trait	PO:0001004 - anther development stage , PO:0009071 - anther wall tapetum , PO:0009066 - anther , PO:0009049 - inflorescence 
7490	UGP1	Ugp1, OsUgp1, UGP2, UGP3	UDP-GLUCOSE PYROPHOSPHORYLASE 1	UDP-Glucose Pyrophosphorylase1, UDP-Glucose Pyrophosphorylase 1, UGPase 1, UGPase, UTP:glucose phosphate uridylyltransferase	UDP-GLUCOSE PYROPHOSPHORYLASE 1		9	DQ395328, DQ978224, AB062606. D15437. EU267965. UGP2 and UGP3 in Li et al. 2011. UGPase in Abe et al. 2002.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os09g0553200	LOC_Os09g38030.1, LOC_Os09g38030.2	GR:0061332			GO:0052543 - callose deposition in cell wall, GO:0070592 - cell wall polysaccharide biosynthetic process, GO:0046686 - response to cadmium ion, GO:0016036 - cellular response to phosphate starvation, GO:0010238 - response to proline, GO:0048653 - anther development, GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity, GO:0042545 - cell wall modification, GO:0005886 - plasma membrane, GO:0009555 - pollen development, GO:0009651 - response to salt stress	TO:0000034 - chromium sensitivity	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
7491	UGP2	Ugp2, OsUgp2	UDP-GLUCOSE PYROPHOSPHORYLASE 2	UDP-Glucose Pyrophosphorylase2, UDP-Glucose Pyrophosphorylase 2, UDPGase 2	UDP-GLUCOSE PYROPHOSPHORYLASE 2		2	AF249880.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0117700	LOC_Os02g02560.1				GO:0016779 - nucleotidyltransferase activity, GO:0019252 - starch biosynthetic process, GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity, GO:0009555 - pollen development	TO:0000421 - pollen fertility, TO:0000696 - starch content	PO:0025281 - pollen , PO:0009066 - anther , PO:0025395 - floral organ , PO:0001007 - pollen development stage 
7492	WDA1	OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5	WAX-DEFICIENT ANTHER 1	Wax-deficient anther1, Wax-deficient anther 1, WDA1 protein, Glossy1-homologous gene 5	WDA1 PROTEIN	wda1	10	AC026815. AF143746. lipid metabolic enzyme. Similar to Arabidopsis CER1. GRO:0007224; stamen stage ST5-8.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os10g0471100	LOC_Os10g33250.3, LOC_Os10g33250.2, LOC_Os10g33250.1	GR:0080022			GO:0010143 - cutin biosynthetic process, GO:0010025 - wax biosynthetic process, GO:0043668 - exine, GO:0005783 - endoplasmic reticulum, GO:0048653 - anther development	TO:0000723 - microsporocyte development trait, TO:0000276 - drought tolerance, TO:0000214 - anther shape, TO:0000245 - pollen free, TO:0000709 - leaf gloss, TO:0000187 - anther color, TO:0000531 - anther length	PO:0000032 - tetrad of microspores , PO:0000022 - plant cuticle , PO:0000282 - trichome , PO:0009066 - anther , PO:0009073 - stigma , PO:0020091 - obsolete microgametophyte , PO:0009071 - anther wall tapetum , PO:0000002 - anther wall , PO:0009036 - lodicule 
7495	XB3	Xb3, OsRING223, RING223	XA21 BINDING PROTEIN 3	Xa21-binding protein 3, receptor-like kinase Xa21-binding protein 3, RING-type E3 ubiquitin ligase 223	XA21 BINDING PROTEIN 3		5	E3 Ubiquitin ligase. AF272860. Q65XV2. PO:0009025; leaf.	 Tolerance and resistance - Disease resistance	Os05g0112000	LOC_Os05g02130.1	GR:0101175			GO:0005515 - protein binding, GO:0008270 - zinc ion binding, GO:0004872 - receptor activity, GO:0051865 - protein autoubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0016301 - kinase activity, GO:0016567 - protein ubiquitination	TO:0000175 - bacterial blight disease resistance	PO:0009025 - vascular leaf 
7497	YAB5	OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1, OsTPB1	YABBY 5	Protein YABBY 5, TONGARI-BOUSHI1, TONGARI-BOUSHI 1	PROTEIN YABBY 5	tob1, osyab5	4	BAF15337. Q0JBF0. OsYAB3 in Dai et al. 2007.	 Other,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0536300	LOC_Os04g45330.1				GO:0048366 - leaf development, GO:0046872 - metal ion binding, GO:0010073 - meristem maintenance, GO:0010229 - inflorescence development, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0009908 - flower development, GO:0048437 - floral organ development	TO:0000622 - flower development trait, TO:0000621 - inflorescence development trait, TO:0000655 - leaf development trait	PO:0025477 - floral organ primordium , PO:0000017 - vascular leaf primordium , PO:0001050 - leaf development stage , PO:0025487 - bract primordium , PO:0009051 - spikelet , PO:0001083 - inflorescence development stage , PO:0007615 - flower development stage 
7498	YGL1	OsYGL1, CHLG, Ygl1, CS, OsCHLG	YELLOW-GREEN LEAF 1	chlorina, Chl synthetase, Chlorophyll synthase, yellow green leaf 1	CHLOROPHYLL SYNTHASE	ygl1	5	EF432576. Q5W6H5.	 Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0349700	LOC_Os05g28200.2, LOC_Os05g28200.1				GO:0009073 - aromatic amino acid family biosynthetic process, GO:0051707 - response to other organism, GO:0015994 - chlorophyll metabolic process, GO:0009416 - response to light stimulus, GO:0006098 - pentose-phosphate shunt, GO:0006364 - rRNA processing, GO:0009965 - leaf morphogenesis, GO:0010027 - thylakoid membrane organization, GO:0031969 - chloroplast membrane, GO:0009534 - chloroplast thylakoid, GO:0042793 - transcription from plastid promoter, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0016021 - integral to membrane, GO:0016117 - carotenoid biosynthetic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019344 - cysteine biosynthetic process, GO:0030154 - cell differentiation, GO:0015995 - chlorophyll biosynthetic process, GO:0009902 - chloroplast relocation, GO:0046408 - chlorophyll synthetase activity, GO:0046686 - response to cadmium ion, GO:0051607 - defense response to virus	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0000075 - light sensitivity	
7502	MAR5	Osmar5	TC1/MARINER TRANSPOSABLE ELEMENT 5	Tc1/mariner element 5, Mariner 5, mariner-like element 5, Tc1/Mariner-like element 5			6	AP002864: 9230-9480.	 Other						GO:0032196 - transposition		
8000	WAK12	OsWAK12, OsRLCK75, RLCK75	WALL-ASSOCIATED KINASE GENE 12	Receptor-like Cytoplasmic Kinase 75	WALL-ASSOCIATED KINASE 12		2	LOC_Os02g41480.	 Biochemical character	Os02g0623600	LOC_Os02g41480.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8001	WAK13	OsWAK13	WALL-ASSOCIATED KINASE GENE 13		WALL-ASSOCIATED KINASE 13		2		 Biochemical character	Os02g0623932/Os02g0624100	LOC_Os02g41500.1				GO:0006468 - protein amino acid phosphorylation, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
8002	WAK26	OsWAK26	WALL-ASSOCIATED KINASE GENE 26		WALL-ASSOCIATED KINASE 26		3		 Biochemical character								
8003	WAK37	OsWAK37	WALL-ASSOCIATED KINASE GENE 37		WALL-ASSOCIATED KINASE 37		4	CB633483, CB674990.	 Biochemical character	Os04g0365100	LOC_Os04g29580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8004	WAK39	OsWAK39	WALL-ASSOCIATED KINASE GENE 39		WALL-ASSOCIATED KINASE 39		4		 Biochemical character								
8005	WAK40	OsWAK40	WALL-ASSOCIATED KINASE GENE 40		WALL-ASSOCIATED KINASE 40		4		 Biochemical character		LOC_Os04g29790.1						
8006	WAK42	OsWAK42	WALL-ASSOCIATED KINASE GENE 42		WALL-ASSOCIATED KINASE 42		4		 Biochemical character								
8007	WAK50	OsWAK50	WALL-ASSOCIATED KINASE GENE 50		WALL-ASSOCIATED KINASE 50		4		 Biochemical character	Os04g0598900	LOC_Os04g51040.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
8008	WAK56	OsWAK56	WALL-ASSOCIATED KINASE GENE 56		WALL-ASSOCIATED KINASE 56		5		 Biochemical character								
8009	WAK57/58	OsWAK57/58, OsWAK57, OsWAK58	WALL-ASSOCIATED KINASE GENE 57/58		WALL-ASSOCIATED KINASE 57/58		5	OsWAK58 was merged with OsWAK57. AC118287:  27676(23550)-18839.	 Biochemical character								
8010	WAK59	OsWAK59	WALL-ASSOCIATED KINASE GENE 59		WALL-ASSOCIATED KINASE 59		5	BM421232.	 Biochemical character		LOC_Os04g30330.1						
8011	WAK60	OsWAK60	WALL-ASSOCIATED KINASE GENE 60		WALL-ASSOCIATED KINASE 60		4	BQ909228, BM038524.	 Biochemical character	Os04g0370900	LOC_Os04g30240.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0030247 - polysaccharide binding		
8012	WAK87	OsWAK87	WALL-ASSOCIATED KINASE GENE 87		WALL-ASSOCIATED KINASE 87		9		 Biochemical character	Os09g0482640	LOC_Os09g30454.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity		
8013	WAK93	OsWAK93, OsRLCK286, RLCK286	WALL-ASSOCIATED KINASE GENE 93	Receptor-like Cytoplasmic Kinase 286	WALL-ASSOCIATED KINASE 93		10	LOC_Os10g01390.	 Biochemical character	Os10g0103140	LOC_Os10g01390.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8014	WAK94	OsWAK94	WALL-ASSOCIATED KINASE GENE 94		WALL-ASSOCIATED KINASE 94		10	OSJNBa0096E22.11	 Biochemical character						GO:0016301 - kinase activity, GO:0030247 - polysaccharide binding		
8015	WAK95	OsWAK95	WALL-ASSOCIATED KINASE GENE 95		WALL-ASSOCIATED KINASE 95		10		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0111400	LOC_Os10g02250.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	
8016	WAK96/97	OsWAK96/97, OsWAK96, OsWAK97	WALL-ASSOCIATED KINASE GENE 96/97		WALL-ASSOCIATED KINASE 96/97		10	OsWAK96 was merged with OsWAK97.	 Biochemical character	Os10g0111900	LOC_Os10g02276.1, LOC_Os10g02284.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
8017	WAK98	OsWAK98, OsRLCK287, RLCK287	WALL-ASSOCIATED KINASE GENE 98	Receptor-like Cytoplasmic Kinase 287	WALL-ASSOCIATED KINASE 98		10	BQ908901. LOC_Os10g02360.	 Biochemical character,  Tolerance and resistance,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Seed	Os10g0112700	LOC_Os10g02360.1				GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
8018	WAK99	OsWAK99	WALL-ASSOCIATED KINASE GENE 99		WALL-ASSOCIATED KINASE 99		10		 Biochemical character						GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding		
8019	WAK100	OsWAK100, OsRLCK291, RLCK291	WALL-ASSOCIATED KINASE GENE 100	Receptor-like Cytoplasmic Kinase 291	WALL-ASSOCIATED KINASE 100		10	LOC_Os10g05170.	 Biochemical character	Os10g0141300	LOC_Os10g05170.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
8020	WAK101	OsWAK101, OsRLCK292, RLCK292	WALL-ASSOCIATED KINASE GENE 101	Receptor-like Cytoplasmic Kinase 292	WALL-ASSOCIATED KINASE 101		10	BQ908738. LOC_Os10g05250.	 Biochemical character	Os10g0142600 	LOC_Os10g05250.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8021	WAK102	OsWAK102, OsRLCK293, RLCK293	WALL-ASSOCIATED KINASE GENE 102	Receptor-like Cytoplasmic Kinase 293	WALL-ASSOCIATED KINASE 102		10	LOC_Os10g05400.	 Biochemical character	Os10g0143866	LOC_Os10g05400.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8022	WAK103	OsWAK103	WALL-ASSOCIATED KINASE GENE 103		WALL-ASSOCIATED KINASE 103		10		 Biochemical character	Os10g0151100	LOC_Os10g06030.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
8023	WAK104	OsWAK104	WALL-ASSOCIATED KINASE GENE 104		WALL-ASSOCIATED KINASE 104		10		 Biochemical character	Os10g0151500 	LOC_Os10g06090.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
8025	WAK107	OsWAK107, OsWAK106, WAK106	WALL-ASSOCIATED KINASE GENE 107	WALL-ASSOCIATED KINASE 106	WALL-ASSOCIATED KINASE 107		10	OsWAK106 (OSJNBa0011A24.19, LOC_Os10g09550.1), OsWAK107 (OSJNBa0011A24.20, LOC_Os10g09570.1).	 Biochemical character	Os10g0174548	LOC_Os10g09550.1, LOC_Os10g09570.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0016301 - kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
8026	WAK108	OsWAK108	WALL-ASSOCIATED KINASE GENE 108		WALL-ASSOCIATED KINASE 108		10		 Biochemical character	Os10g0174800 	LOC_Os10g09620.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0016301 - kinase activity		
8027	WAK109/110	OsWAK109/110, OsWAK109, OsWAK110	WALL-ASSOCIATED KINASE GENE 109/110		WALL-ASSOCIATED KINASE 109/110		10	OsWAK109 was merged with OsWAK110.	 Biochemical character	Os10g0175600	LOC_Os10g09690.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding		
8028	WAK111	OsWAK111	WALL-ASSOCIATED KINASE GENE 111		WALL-ASSOCIATED KINASE 111		10		 Biochemical character	Os10g0178800	LOC_Os10g10030.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
8029	WAK112	OsWAK112, OsWAK112d	WALL-ASSOCIATED KINASE GENE 112	cell wall associated receptor kinase 112, cell wall associated receptor kinase 112d	WALL-ASSOCIATED KINASE 112		10	BI118649, CA759266. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0180800	LOC_Os10g10130.5, LOC_Os10g10130.4, LOC_Os10g10130.3, LOC_Os10g10130.2, LOC_Os10g10130.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0009651 - response to salt stress, GO:0030247 - polysaccharide binding, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0010200 - response to chitin, GO:0005509 - calcium ion binding, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content	PO:0009029 - stamen , PO:0009073 - stigma , PO:0020031 - radicle , PO:0009005 - root , PO:0025034 - leaf , PO:0020105 - ligule , PO:0020033 - coleoptile , PO:0009047 - stem , PO:0009038 - palea 
8030	WAK113	OsWAK113	WALL-ASSOCIATED KINASE GENE 113		WALL-ASSOCIATED KINASE 113		10		 Biochemical character	Os10g0326100	LOC_Os10g17890.1				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding		
8031	WAK114	OsWAK114	WALL-ASSOCIATED KINASE GENE 114		WALL-ASSOCIATED KINASE 114		10		 Biochemical character	Os10g0326200	LOC_Os10g17910.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8032	WAK115	OsWAK115	WALL-ASSOCIATED KINASE GENE 115		WALL-ASSOCIATED KINASE 115		10	AC105745: 11963-14153.	 Biochemical character						GO:0004674 - protein serine/threonine kinase activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0007166 - cell surface receptor linked signal transduction, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding		
8033	WAK116	OsWAK116, OsRLCK332, RLCK332	WALL-ASSOCIATED KINASE GENE 116	Receptor-like Cytoplasmic Kinase 332	WALL-ASSOCIATED KINASE 116		11		 Biochemical character	Os11g0553500	LOC_Os11g35120.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8034	WAK117	OsWAK117	WALL-ASSOCIATED KINASE GENE 117		WALL-ASSOCIATED KINASE 117		11		 Biochemical character	Os11g0555600	LOC_Os11g35220.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
8035	WAK118	OsWAK118, OsRLCK333, RLCK333	WALL-ASSOCIATED KINASE GENE 118	Receptor-like Cytoplasmic Kinase 333	WALL-ASSOCIATED KINASE 118		11		 Biochemical character		LOC_Os11g35260.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8036	WAK119	OsWAK119, OsRLCK335, RLCK335	WALL-ASSOCIATED KINASE GENE 119	Receptor-like Cytoplasmic Kinase 335	WALL-ASSOCIATED KINASE 119		11		 Biochemical character	Os11g0556600	LOC_Os11g35290.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0007166 - cell surface receptor linked signal transduction		
8037	WAK120	OsWAK120	WALL-ASSOCIATED KINASE GENE 120		WALL-ASSOCIATED KINASE 120		11	CB680735.	 Biochemical character	Os11g0565300 	LOC_Os11g35860.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding		
8038	WAK121	OsWAK121	WALL-ASSOCIATED KINASE GENE 121		WALL-ASSOCIATED KINASE 121		11		 Biochemical character	Os11g0693700	LOC_Os11g47110.1				GO:0030247 - polysaccharide binding		
8039	WAK124	OsWAK124	WALL-ASSOCIATED KINASE GENE 124		WALL-ASSOCIATED KINASE 124		12		 Biochemical character	Os12g0266200	LOC_Os12g16540.1				GO:0005509 - calcium ion binding, GO:0016301 - kinase activity, GO:0030247 - polysaccharide binding		
8040	WAK125	OsWAK125, OsRLCK368, RLCK368, OsWAK-RLP	WALL-ASSOCIATED KINASE GENE 125	Receptor-like Cytoplasmic Kinase 368, OsWAK receptor-like protein OsWAK-RLP, wall-associated receptor kinase 2	WALL-ASSOCIATED KINASE 125		12	wall-associated receptor kinase 2 in Dash et al. 2021. BGIOSGA037385 (indica). GO:0080181: lateral root branching.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance	Os12g0478400	LOC_Os12g29434.1, LOC_Os12g29430.1				GO:0016020 - membrane, GO:0030247 - polysaccharide binding, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance, TO:0000276 - drought tolerance, TO:0000043 - root anatomy and morphology trait	
8041	WAK126	OsWAK126, OsRLCK374, RLCK374	WALL-ASSOCIATED KINASE GENE 126	Receptor-like Cytoplasmic Kinase 374	WALL-ASSOCIATED KINASE 126		12		 Biochemical character	Os12g0614800/Os12g0614851	LOC_Os12g42040.1				GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004672 - protein kinase activity		
8042	WAK127	OsWAK127	WALL-ASSOCIATED KINASE GENE 127		WALL-ASSOCIATED KINASE 127		12		 Biochemical character	Os12g0614900	LOC_Os12g42044.5, LOC_Os12g42044.4, LOC_Os12g42044.3, LOC_Os12g42044.2, LOC_Os12g42044.1						
8043	WAK128	OsWAK128	WALL-ASSOCIATED KINASE GENE 128	Wall-associated kinase gene 128	WALL-ASSOCIATED KINASE 128		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0615100	LOC_Os12g42060.1, LOC_Os12g42060.2, LOC_Os12g42060.3				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
8044	WAK129	OsWAK129, OsRLCK375, RLCK375, OsWAK129b	WALL-ASSOCIATED KINASE GENE 129	Receptor-like Cytoplasmic Kinase 375	WALL-ASSOCIATED KINASE 129		12	miR815c target gene.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0615300	LOC_Os12g42070.1				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005509 - calcium ion binding	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
8050	RIRE1	RIRE1, Osr11, Rire1	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr11			1	AP003853: 96975-98088. TY1/Copia type LTR-retrotransposon. 	 Other						GO:0032196 - transposition		
8051	RIRE9	RIRE9, Osr27, Rire9	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon, LTR retrotransposon Osr27			6	AP000399: 75139-88038.	 Other						GO:0032196 - transposition		
8052	RIRE10	RIRE10	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon					 Other						GO:0032196 - transposition		
8053	AMY1A	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A, AmyI-1, OsAmyI-1, OsRamy1A	ALPHA-AMYLASE 1A	Alpha-amylase1A, Alpha-amylase-1A, Alpha-amylase isozyme 1B, Amylase-1, alpha-amylase I-1	ALPHA-AMYLASE 1A		2	EC=3.2.1.1 Alpha-amylase, 1,4-alpha-D-glucan glucanohydrolase. M24286. P17654. Innate immunity	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0765600	LOC_Os02g52710.1	GR:0060043			GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0005983 - starch catabolic process, GO:0009409 - response to cold, GO:0005509 - calcium ion binding, GO:0004556 - alpha-amylase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009408 - response to heat, GO:0010212 - response to ionizing radiation, GO:0005987 - sucrose catabolic process	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000161 - radiation response trait, TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity	
8054	AMY1C	Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C, alphaAmy10-C	ALPHA-AMYLASE 1C	Alpha-amylase1C, Alpha-amylase 1C, Amylase-3, Alpha-amylase-1A, alpha-amylase 10-C	ALPHA-AMYLASE 1C		2	EU267975. M81143. GO:0103025: alpha-amylase activity (releasing maltohexaose).	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0765400	LOC_Os02g52700.1	GR:0061333			GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009845 - seed germination, GO:0005975 - carbohydrate metabolic process, GO:0005509 - calcium ion binding, GO:0004556 - alpha-amylase activity	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0007057 - 0 seed germination stage 
8055	CDPK1	OsCDPK1, OsCPK1, CPK1	CALCIUM-DEPENDENT PROTEIN KINASE 1	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 1		1	AP002819.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0622600	LOC_Os01g43410.1				GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0010857 - calcium-dependent protein kinase activity, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding	TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
8056	CDPK2	OsCDPK2, OsCPK2, CPK2	CALCIUM-DEPENDENT PROTEIN KINASE 2	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 2		1	AP003073, AP003260.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Inflorescence	Os01g0808400	LOC_Os01g59360.1				GO:0005509 - calcium ion binding, GO:0010857 - calcium-dependent protein kinase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0080092 - regulation of pollen tube growth, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	PO:0009029 - stamen , PO:0009049 - inflorescence 
8057	CDPK3	OsCDPK3, OsCPK3, CPK3	CALCIUM-DEPENDENT PROTEIN KINASE 3	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 3		1	AP004366. AK058494.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0832300	LOC_Os01g61590.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
8058	CDPK4	OsCDPK4, OsCPK4, CPK4, CDPK1	CALCIUM-DEPENDENT PROTEIN KINASE 4	calcium-dependent protein kinase 4, Ca2 +-dependent protein kinase 4	CALCIUM-DEPENDENT PROTEIN KINASE 4	oscpk4, oscpk4-1, oscpk4-2	2	AP005311, AF194413. AtCPK28 ortholog. GO:1903427: negative regulation of reactive oxygen species biosynthetic process. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0126400	LOC_Os02g03410.1, LOC_Os02g03410.2				GO:0050832 - defense response to fungus, GO:0002238 - response to molecule of fungal origin, GO:0005886 - plasma membrane, GO:0031348 - negative regulation of defense response, GO:0009414 - response to water deprivation, GO:0010857 - calcium-dependent protein kinase activity, GO:0009735 - response to cytokinin stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000167 - cytokinin sensitivity	
8059	CDPK5	OsCDPK5, OsCPK5, CPK5	CALCIUM-DEPENDENT PROTEIN KINASE 5	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 5		2	AP004071. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0685900	LOC_Os02g46090.1				GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010618 - aerenchyma formation	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity	PO:0000258 - root cortex 
8060	CDPK6	OsCDPK6, OsCPK6, CPK6	CALCIUM-DEPENDENT PROTEIN KINASE 6	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 6		2	AP004082.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0832000	LOC_Os02g58520.1				GO:0009414 - response to water deprivation, GO:0010857 - calcium-dependent protein kinase activity, GO:0010359 - regulation of anion channel activity, GO:0005509 - calcium ion binding, GO:0010119 - regulation of stomatal movement, GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005829 - cytosol	TO:0000276 - drought tolerance	PO:0007633 - endosperm development stage 
8061	CDPK8	OsCDPK8, OsCPK8	CALCIUM-DEPENDENT PROTEIN KINASE 8	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 8		3	AC135595, AC145384. a calcium signaling component. LOC_Os03g59390.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0808600	LOC_Os03g59390.1				GO:0010857 - calcium-dependent protein kinase activity, GO:0005737 - cytoplasm, GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009411 - response to UV, GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0004698 - calcium-dependent protein kinase C activity	TO:0000160 - UV light sensitivity	
8062	CDPK9	OsCDPK9, OsCPK9, CPK9	CALCIUM-DEPENDENT PROTEIN KINASE 9	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 9		3	AC097277.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os03g0688300	LOC_Os03g48270.1				GO:0010857 - calcium-dependent protein kinase activity, GO:0002237 - response to molecule of bacterial origin, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000180 - spikelet fertility, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
8063	CDPK10	OsCDPK10, OsCPK10, CPK10	CALCIUM-DEPENDENT PROTEIN KINASE 10	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 10		3	AC084296. GO:1901033: positive regulation of response to reactive oxygen species. GO:0061691: detoxification of hydrogen peroxide.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0788500	LOC_Os03g57450.1				GO:0005886 - plasma membrane, GO:0009735 - response to cytokinin stimulus, GO:0005509 - calcium ion binding, GO:0000302 - response to reactive oxygen species, GO:0042542 - response to hydrogen peroxide, GO:0010857 - calcium-dependent protein kinase activity, GO:0031000 - response to caffeine, GO:0046466 - membrane lipid catabolic process, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus	TO:0000167 - cytokinin sensitivity, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content	
8064	ESL4	CDPK12, OsCDPK12, OsCPK12, CPK12, OsESL4	EARLY SENESCENCE LEAF 4	calcium-dependent protein kinase, Calcium-dependent protein kinase 12, Early senescence leaf 4	CALCIUM-DEPENDENT PROTEIN KINASE 12	oscpk12, esl4, oscpk12-cr, oscpk12-cr1, oscpk12-cr2, oscpk12-cr3	4	AL606687. TO:0020093: nitrogen content.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Biochemical character	Os04g0560600	LOC_Os04g47300.1				GO:0004674 - protein serine/threonine kinase activity, GO:0006807 - nitrogen compound metabolic process, GO:0010150 - leaf senescence, GO:0031000 - response to caffeine, GO:0009414 - response to water deprivation, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0006979 - response to oxidative stress, GO:0018105 - peptidyl-serine phosphorylation, GO:0016020 - membrane, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0009627 - systemic acquired resistance, GO:0009697 - salicylic acid biosynthetic process	TO:0002657 - oxidative stress, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0000371 - yield trait, TO:0000455 - seed set percent, TO:0000440 - grain number per plant, TO:0000271 - inflorescence length, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content	PO:0020104 - leaf sheath , PO:0007633 - endosperm development stage , PO:0025034 - leaf , PO:0009047 - stem 
8065	CDPK14	OsCDPK14, OsCPK14, CPK14	CALCIUM-DEPENDENT PROTEIN KINASE 14	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 14		5	AC129718.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Inflorescence	Os05g0491900	LOC_Os05g41270.1				GO:0009414 - response to water deprivation, GO:0010857 - calcium-dependent protein kinase activity	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009029 - stamen 
8066	CDPK15	OsCDPK15, OsCPK15	CALCIUM-DEPENDENT PROTEIN KINASE 15	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 15		5	AC098836, AC137608. LOC_Os05g50810.	 Biochemical character	Os05g0585500	LOC_Os05g50810.1, LOC_Os05g50810.2				GO:0010857 - calcium-dependent protein kinase activity, GO:0005509 - calcium ion binding, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0010119 - regulation of stomatal movement, GO:0010359 - regulation of anion channel activity, GO:0005773 - vacuole, GO:0004674 - protein serine/threonine kinase activity		
8067	CDPK16	OsCDPK16, OsCPK16, CPK16	CALCIUM-DEPENDENT PROTEIN KINASE 16	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 16		5	AC108503, AC121361.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0467000	LOC_Os05g39090.1				GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0010857 - calcium-dependent protein kinase activity, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance	
8068	CDPK17	OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5	CALCIUM-DEPENDENT PROTEIN KINASE 17	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 17	oscpk17	7	AP003847.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0161600	LOC_Os07g06740.1, LOC_Os07g06740.2, LOC_Os07g06740.3				GO:0009409 - response to cold, GO:0009733 - response to auxin stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0006109 - regulation of carbohydrate metabolic process, GO:0010857 - calcium-dependent protein kinase activity	TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity	
8069	CDPK18	OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18	CALCIUM-DEPENDENT PROTEIN KINASE 18	calcium-dependent protein kinase 18	CALCIUM-DEPENDENT PROTEIN KINASE 18		7	AF194414, AP005325, AP004305.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0409900	LOC_Os07g22710.1, LOC_Os07g22710.2, LOC_Os07g22710.3, LOC_Os07g22710.4				GO:0005509 - calcium ion binding, GO:0010857 - calcium-dependent protein kinase activity, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance	
8070	CDPK19	OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2	CALCIUM-DEPENDENT PROTEIN KINASE 19	calcium-dependent protein kinase, calcium-dependent protein kinase 2	CALCIUM-DEPENDENT PROTEIN KINASE 19		7	P53683. AP005325, AP004305, X81394.Y13658 (promoter and 5'UTR). LOC_Os07g33110.	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0515100	LOC_Os07g33110.1, LOC_Os07g33110.2, LOC_Os07g33110.3, LOC_Os07g33110.4, LOC_Os07g33110.5				GO:0009733 - response to auxin stimulus, GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0010857 - calcium-dependent protein kinase activity, GO:0051607 - defense response to virus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009739 - response to gibberellin stimulus	TO:0000148 - viral disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000020 - black streak dwarf virus resistance	
8071	CDPK20	OsCDPK20, OsCPK20, CPK20	CALCIUM-DEPENDENT PROTEIN KINASE 20	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 20		7	AP003866.	 Biochemical character	Os07g0568600	LOC_Os07g38120.1				GO:0010857 - calcium-dependent protein kinase activity, GO:0004698 - calcium-dependent protein kinase C activity, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding		
8072	CDPK21	OsCDPK21, OsCPK21, CPK21, CPK-21	CALCIUM-DEPENDENT PROTEIN KINASE 21	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 21		8	AP003948. EU709762. BGIOSGA026567 (indica).	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance	Os08g0540400	LOC_Os08g42750.1				GO:0005509 - calcium ion binding, GO:0009651 - response to salt stress, GO:0002215 - defense response to nematode, GO:0009737 - response to abscisic acid stimulus, GO:0010857 - calcium-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009624 - response to nematode, GO:0031000 - response to caffeine	TO:0000384 - nematode damage resistance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0004506 - developing seed stage 
8073	CDPK22	OsCDPK22, OsCPK22, CPK22	CALCIUM-DEPENDENT PROTEIN KINASE 22	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 22		9	AC108755, AP004138, AC108760.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Reproductive organ - Inflorescence	Os09g0514200	LOC_Os09g33910.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010857 - calcium-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009029 - stamen 
8075	CDPK24	OsCDPK24, OsCPK24, OsCDPK14, CPK24	CALCIUM-DEPENDENT PROTEIN KINASE 24	calcium-dependent protein kinase, calcium-dependent protein kinase 14	CALCIUM-DEPENDENT PROTEIN KINASE 24		11	AC128643. AY144497. OsCDPK14 in Zhang et al. 2005 and Wang et al. 2016. a calcium/calmodulin-dependent protein kinase. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0171500	LOC_Os11g07040.1				GO:0009409 - response to cold, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0010857 - calcium-dependent protein kinase activity, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009739 - response to gibberellin stimulus, GO:0005509 - calcium ion binding, GO:0009411 - response to UV, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance, TO:0000160 - UV light sensitivity, TO:0006002 - proline content, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0025034 - leaf , PO:0009047 - stem 
8076	CDPK25	OsCDPK25, OsCPK25, CPK25	CALCIUM-DEPENDENT PROTEIN KINASE 25	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 25		11	AC123528. AF319480.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0136600	LOC_Os11g04170.1				GO:0004674 - protein serine/threonine kinase activity, GO:0031000 - response to caffeine, GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0080092 - regulation of pollen tube growth, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0010857 - calcium-dependent protein kinase activity	TO:0000276 - drought tolerance	PO:0009029 - stamen , PO:0009049 - inflorescence 
8077	CDPK26	OsCDPK26, OsCPK26, CPK26	CALCIUM-DEPENDENT PROTEIN KINASE 26	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 26		12	BX000508.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Inflorescence	Os12g0133500	LOC_Os12g03970.1				GO:0031000 - response to caffeine, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0010857 - calcium-dependent protein kinase activity		PO:0009029 - stamen , PO:0009049 - inflorescence 
8078	CDPK27	OsCDPK27, OsCPK27, CPK27	CALCIUM-DEPENDENT PROTEIN KINASE 27	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 27		12	AL845343.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Reproductive organ - Inflorescence	Os12g0486600	LOC_Os12g30150.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009029 - stamen , PO:0009049 - inflorescence 
8079	CDPK28	OsCDPK28, OsCPK28, CPK28	CALCIUM-DEPENDENT PROTEIN KINASE 28	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 28		12	AL954825.	 Biochemical character	Os12g0169800	LOC_Os12g07230.1				GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
8080	CDPK29	OsCDPK29, OsCPK29	CALCIUM-DEPENDENT PROTEIN KINASE 29	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 29		12	BX842241. LOC_Os12g12860.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Inflorescence	Os12g0230200	LOC_Os12g12860.1				GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0010857 - calcium-dependent protein kinase activity, GO:0004674 - protein serine/threonine kinase activity		PO:0009029 - stamen , PO:0009049 - inflorescence 
8081	CDPK30	OsCDPK30, OsCPK30, CPK30	CALCIUM-DEPENDENT PROTEIN KINASE 30	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 30		7	CPK30	 Biochemical character	Os07g0641200	LOC_Os07g44710.1				GO:0005509 - calcium ion binding, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding, GO:0031000 - response to caffeine, GO:0009739 - response to gibberellin stimulus, GO:0004674 - protein serine/threonine kinase activity	TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity	
8082	CDPK31	OsCDPK31, OsCPK31, CPK31	CALCIUM-DEPENDENT PROTEIN KINASE 31	calcium-dependent protein kinase	CALCIUM-DEPENDENT PROTEIN KINASE 31			AK110341. GO:2000034: regulation of seed maturation.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed						GO:0031000 - response to caffeine, GO:0043036 - starch grain, GO:0010857 - calcium-dependent protein kinase activity, GO:0010431 - seed maturation	TO:0002661 - seed maturation	PO:0007633 - endosperm development stage , PO:0009001 - fruit 
8085	EHD2/RID1	Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2	EARLY HEADING DATE 2	early heading date 2, Indeterminate 1, Indeterminate, Rice Indeterminate 1		ehd2, rid1	10	rice ortholog of the maize ID1gene, Rice homologue of maize INDETERMINATE 1. AB359195(Tohoku IL9 genomic DNA), AB359196(Tohoku IL9 mRNA), AB359197(R0364 genomic DNA), AB359198(R0364 mRNA), FJ009578(Zhonghua 11 mRNA), FJ009579(Zhonghua 11 genomic DNA).	 Reproductive organ - Heading date	Os10g0419200	LOC_Os10g28330.1				GO:0008270 - zinc ion binding, GO:0009648 - photoperiodism, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time, TO:0000137 - days to heading	
8086	PSY1	OsPSY1	PHYTOENE SYNTHASE 1	phytoene synthase 1, PSY1-like gene	PHYTOENE SYNTHASE 1		6	AY445521, AY024350, AP005750, AU082986. AJ715786. FJ971173-FJ971176.	 Coloration,  Coloration - Others,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0729000	LOC_Os06g51290.4, LOC_Os06g51290.3, LOC_Os06g51290.1, LOC_Os06g51290.2				GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity, GO:0046905 - phytoene synthase activity, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups, GO:0009416 - response to light stimulus, GO:0016117 - carotenoid biosynthetic process	TO:0000075 - light sensitivity	
8087	PSY2	OsPSY2	PHYTOENE SYNTHASE 2	phytoene synthase 2	PHYTOENE SYNTHASE 2		12	AY452768, AY024351, AL831803.	 Coloration - Others,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0626400	LOC_Os12g43130.1				GO:0046905 - phytoene synthase activity, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups, GO:0016117 - carotenoid biosynthetic process, GO:0010287 - plastoglobule, GO:0009058 - biosynthetic process, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0009416 - response to light stimulus, GO:0009408 - response to heat	TO:0000432 - temperature response trait, TO:0000075 - light sensitivity	
8088	PSY3	PSY3	PHYTOENE SYNTHASE 3		PHYTOENE SYNTHASE 3		3		 Biochemical character						GO:0046905 - phytoene synthase activity		
8089	AATP6	A-atp6	A-ATPASE SUBUNIT 6	ATPase subunit 6	A-ATPASE SUBUNIT 6		Mt		 Biochemical character						GO:0016887 - ATPase activity		
8090	AMY3C	Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C, OsAmy3B	ALPHA-AMYLASE 3C	Alpha-amylase3C, Alpha-amylase isozyme 3C precursor, Alpha-amylase isozyme 3C, Amylase-7, Alpha-amylase-3A	ALPHA-AMYLASE 3C		9	EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. P27939. X56338. OsAmy3B in Suriyasak et al. 2020.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0457800	LOC_Os09g28420.1	GR:0061335			GO:0005509 - calcium ion binding, GO:0009408 - response to heat, GO:0005987 - sucrose catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0005983 - starch catabolic process, GO:0009739 - response to gibberellin stimulus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009845 - seed germination, GO:0004556 - alpha-amylase activity	TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance	PO:0007057 - 0 seed germination stage 
8093	CAB2R	Oscab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a	CHLOROPHYLL A/B BINDING PROTEIN 2R	"\"Chlorophyll a-b binding protein 2, chloroplastic\", LHCII type I CAB-2, light harvesting chlorophyll a/b binding protein 2"	CHLOROPHYLL A/B BINDING PROTEIN 2R		1	LHCP. P12331. X13909. Lhcb1a in Yamatani et al. 2018.	 Vegetative organ - Leaf	Os01g0600900	LOC_Os01g41710.1				GO:0009658 - chloroplast organization, GO:0009522 - photosystem I, GO:0009765 - photosynthesis, light harvesting, GO:0009507 - chloroplast, GO:0016168 - chlorophyll binding, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis, GO:0000287 - magnesium ion binding, GO:0009523 - photosystem II, GO:0009535 - chloroplast thylakoid membrane, GO:0018298 - protein-chromophore linkage, GO:0009536 - plastid	TO:0002715 - chloroplast development trait	
8094	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1, OsCAT1, OsCATC, OsCAT2	CATALASE A	CATALASE A, Catalase-2*, Catalase-Al (cDNA clone), Catalase isozyme A	CATALASE A	oscata-cr, oscata-cr15, oscata-cr19, oscata-cr22	2	cDNA clone. (Kishimoto et al. 1994b) D29966. EC=1.11.1.6 P0C549(indica), Q0E4K1(japonica). AB004768-AB004775 (Oryza longistaminata catA). AB014441-AB014453 (Oryza sativa and other wild rice species). X61626. EF069505-EF069572 (Oryza sativa and wild rice species). ROS-scavenging enzyme. EF371902. GO:0072593: reactive oxygen species metabolic process. OsCATC in Wang et al. 2021. OsCAT2 in Li et al. 2021, Wu et al. 2023. OsCAT1 in Jiang et al. 2023.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Character as QTL - Plant growth activity,  Biochemical character	Os02g0115700	LOC_Os02g02400.2, LOC_Os02g02400.1, LOC_Os02g02400.3	GR:0060109			GO:0010332 - response to gamma radiation, GO:0043067 - regulation of programmed cell death, GO:0006979 - response to oxidative stress, GO:0005777 - peroxisome, GO:0009408 - response to heat, GO:0009725 - response to hormone stimulus, GO:0004096 - catalase activity, GO:0005829 - cytosol, GO:0009414 - response to water deprivation, GO:0006801 - superoxide metabolic process, GO:0010029 - regulation of seed germination, GO:0055114 - oxidation reduction, GO:0009737 - response to abscisic acid stimulus, GO:0020037 - heme binding, GO:0042742 - defense response to bacterium, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0042744 - hydrogen peroxide catabolic process, GO:0009609 - response to symbiotic bacterium, GO:0009409 - response to cold, GO:0009514 - glyoxysome, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress	TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000401 - plant growth hormone sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000303 - cold tolerance, TO:0000382 - 1000-seed weight, TO:0000326 - leaf color, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000455 - seed set percent, TO:0000152 - panicle number, TO:0000031 - silicon sensitivity	PO:0025034 - leaf , PO:0009066 - anther , PO:0009047 - stem , PO:0009010 - seed 
8095	ACR2.1	CDC25.1, OsACR2.1, OsStr20, STR20	ARSENATE REDUCTASE 1	Sulfurtransferase 20	ARSENATE REDUCTASE 1		10	Q336V5. AY860059. TO:0006054: arsenic content trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0545700	LOC_Os10g39860.1, LOC_Os10g39860.2				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0046685 - response to arsenic, GO:0016791 - phosphatase activity, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0006468 - protein amino acid phosphorylation, GO:0004725 - protein tyrosine phosphatase activity, GO:0009507 - chloroplast		
8096	ACR2.2	CDC25.2, OsACR2.2, OsStr21, STR21	ARSENATE REDUCTASE 2	Sulfurtransferase 21	ARSENATE REDUCTASE 2		3	Q10SX6. AY860058.	 Biochemical character	Os03g0108000	LOC_Os03g01770.1				GO:0016791 - phosphatase activity, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0046685 - response to arsenic, GO:0004725 - protein tyrosine phosphatase activity, GO:0006468 - protein amino acid phosphorylation, GO:0009507 - chloroplast		
8101	HD9	Hd9, qHd9	HEADING DATE 9	heading date  (QTL)-9			3		 Reproductive organ - Heading date,  Reproductive organ						GO:0009648 - photoperiodism		
8102	MUTM2	MutM2, Fpg	MUTM PROTEIN 2	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	MUTM PROTEIN 2		8		 Biochemical character						GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity		
8103	SSIIB	OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b	SOLUBLE STARCH SYNTHASE IIB	"Starch synthase-IIb, starch synthase IIb, \"Soluble starch synthase 2-2, chloroplastic/amyloplastic\", Soluble starch synthase II-2, Starch synthase isoform zSTSII-2"	SOLUBLE STARCH SYNTHASE IIB		2	EC=2.4.1.21 Q6Z2T8. AF395537, AJ308110.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os02g0744700	LOC_Os02g51070.1	GR:0061113			GO:0009507 - chloroplast, GO:0009501 - amyloplast, GO:0009651 - response to salt stress, GO:0019252 - starch biosynthetic process, GO:0009011 - starch synthase activity	TO:0006001 - salt tolerance, TO:0000488 - seed composition based quality trait	PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0009010 - seed , PO:0025034 - leaf 
8104	SSIIC	OsSSIIc, SSII-1, SSII1	SOLUBLE STARCH SYNTHASE IIC	"\"Soluble starch synthase 2-1, chloroplastic/amyloplastic\", Soluble starch synthase II-1"	SOLUBLE STARCH SYNTHASE IIC		10	EC=2.4.1.21 Q7XE48. AF383878. GU727155-GU727212 (wild rice species). FJ811330-FJ811370 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901744-DQ901773 (wild rice species). EF069782-EF069842 (O. sativa and wild rice species).	 Seed - Physiological traits - Storage substances	Os10g0437600	LOC_Os10g30156.1				GO:0019252 - starch biosynthetic process, GO:0009011 - starch synthase activity, GO:0009501 - amyloplast, GO:0009507 - chloroplast		PO:0009089 - endosperm , PO:0025034 - leaf 
8105	SSIIIB	OsSSIIIb. SSIII-1, SSIIIa	SOLUBLE STARCH SYNTHASE IIIB		SOLUBLE STARCH SYNTHASE IIIB		4	AF432915. SSIIIa in Park et al. 2021. GO:2001070:starch binding.  TO:0001069: cooking quality trait. 	 Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Biochemical character	Os04g0624600	LOC_Os04g53310.1	GR:0061114			GO:0009501 - amyloplast, GO:0010229 - inflorescence development, GO:0009011 - starch synthase activity, GO:0009507 - chloroplast, GO:0019252 - starch biosynthetic process, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000621 - inflorescence development trait	PO:0009089 - endosperm , PO:0001083 - inflorescence development stage , PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009010 - seed 
8106	SSIVA	OsSSIVa, SSIV-1, OsSSIV-1	SOLUBLE STARCH SYNTHASE IVA	SOLUBLE STARCH SYNTHASE IV-1	SOLUBLE STARCH SYNTHASE IVA		1	AY373257. AY100470.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os01g0720600 	LOC_Os01g52250.1, LOC_Os01g52250.2, LOC_Os01g52250.6, LOC_Os01g52250.5, LOC_Os01g52250.4, LOC_Os01g52250.3				GO:0009501 - amyloplast, GO:0009011 - starch synthase activity, GO:0009250 - glucan biosynthetic process, GO:0009507 - chloroplast, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009269 - response to desiccation, GO:0019252 - starch biosynthetic process	TO:0000621 - inflorescence development trait, TO:0000394 - drought related trait, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0001083 - inflorescence development stage 
8107	SSIVB	OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2, SSIV2, OsSSIV2	SOLUBLE STARCH SYNTHASE IVB	SOLUBLE STARCH SYNTHASE IV-2	SOLUBLE STARCH SYNTHASE IVB		5	AY373258, AY100471. AY224560.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os05g0533600	LOC_Os05g45720.4, LOC_Os05g45720.3, LOC_Os05g45720.2, LOC_Os05g45720.1				GO:0019252 - starch biosynthetic process, GO:0009011 - starch synthase activity, GO:0009269 - response to desiccation, GO:0005978 - glycogen biosynthetic process, GO:0009507 - chloroplast, GO:0009960 - endosperm development, GO:0009501 - amyloplast	TO:0000394 - drought related trait	PO:0025034 - leaf , PO:0009089 - endosperm , PO:0007633 - endosperm development stage 
8109	NOE1	CATC, OsCat, OsCatC, OsCATC, OsNOE1, noe1, catC, OsCATC, CAT3, OsCAT3, LLM9428, OsLLM9428	NITRIC OXIDE EXCESS 1	catalase C, catalase isozyme C, nitric oxide excess1, large lesion mimic mutant 9428	CATALASE C	noe1, noe1-2, llm9428, OsCAT3crispr, oscatc, oscatc-cr, oscatc-cr7, oscatc-cr19	3	AY339372. D86611. OsCAT3 in Jiang et al. 2023. GO:2000904: regulation of starch metabolic process. TO:0000930: seed shattering.	 Biochemical character,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Lesion mimic,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Physiological traits - Shattering,  Tolerance and resistance - Disease resistance	Os03g0131200	LOC_Os03g03910.1				GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0043067 - regulation of programmed cell death, GO:0005634 - nucleus, GO:0004096 - catalase activity, GO:0010939 - regulation of necrotic cell death, GO:0042744 - hydrogen peroxide catabolic process, GO:0010229 - inflorescence development, GO:0042548 - regulation of photosynthesis, light reaction, GO:0009404 - toxin metabolic process, GO:0006801 - superoxide metabolic process, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0033484 - nitric oxide homeostasis, GO:0031348 - negative regulation of defense response, GO:0009642 - response to light intensity, GO:0009725 - response to hormone stimulus, GO:0005739 - mitochondrion, GO:0005982 - starch metabolic process, GO:0045454 - cell redox homeostasis, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium	TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000447 - filled grain number, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000346 - tiller number, TO:0000019 - seedling height, TO:0000175 - bacterial blight disease resistance, TO:0000455 - seed set percent, TO:0000326 - leaf color, TO:0000460 - light intensity sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000382 - 1000-seed weight, TO:0000401 - plant growth hormone sensitivity, TO:0002657 - oxidative stress, TO:0000074 - blast disease, TO:0000152 - panicle number, TO:0000276 - drought tolerance, TO:0000473 - grain shattering, TO:0000621 - inflorescence development trait, TO:0000063 - mimic response, TO:0002637 - leaf size	PO:0001083 - inflorescence development stage , PO:0009047 - stem , PO:0025034 - leaf , PO:0020104 - leaf sheath 
8110	EIF4G		EUKARYOTIC INITIATION FACTOR 4G		EUKARYOTIC INITIATION FACTOR 4G				 Biochemical character						GO:0006413 - translational initiation		
8111	SBE4	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa	STARCH BRANCHING ENZYME 4	Q-enzyme IIb, starch branching enzyme IIb, Starch branching enzyme IIa	STARCH BRANCHING ENZYME 4	osbe2a	4	AB023498, E14723. KJ008712. The sugary-h (sug-h) mutant phenotype was controlled by a complementary interaction of two recessive genes, Isoamylase1 (OsISA1) and Starch branching enzyme IIa (OsBEIIa) (Lee et al. 2017). TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances	Os04g0409200	LOC_Os04g33460.1				GO:0019252 - starch biosynthetic process, GO:0005982 - starch metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005976 - polysaccharide metabolic process, GO:0009568 - amyloplast starch grain, GO:0009501 - amyloplast, GO:0003844 - 1,4-alpha-glucan branching enzyme activity	TO:0000099 - sugary endosperm, TO:0000399 - grain thickness, TO:0000734 - grain length, TO:0000162 - seed quality, TO:0000489 - carbohydrate composition related trait, TO:0000097 - amylopectin content	PO:0025034 - leaf 
8113	qBPH11	Qbph11	brown planthopper resistance (QTL) 11	brown planthopper resistance QTL			11	This QTL found in indica variety DV85 controls the resistance to brown planthopper biotype 2, being located on chromosome 11 between markers X202 and C1172.	 Tolerance and resistance - Insect resistance								
8114	HWG2	hwg2(t)	HYBRID WEAKNESS G2	hybrid weakness g2			11		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness						GO:0007275 - multicellular organismal development, GO:0048544 - recognition of pollen		
8115	XA28	xa28	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 28	Xanthomonas oryzae pv. oryzae resistance 28					 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8116	XA29	Xa29	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 29	Xanthomonas oryzae pv. oryzae resistance 29					 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8117	XA30	Xa30(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 30	Xanthomonas oryzae pv. oryzae resistance 30			11	Xa30(t) was mapped on the long arm of chromosome 11. Linkage analysis revealed that RM1341, V88, C189 and 03STS located on the same side of Xa30(t), with genetic distances of 11.4 cM, 11.4 cM, 4.4 cM and 2.0 cM respectively.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8118	XA31	Xa31	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 31	Xanthomonas oryzae pv. oryzae resistance 31			4	Five BB R-genes, Xa1, Xa2, Xa12, Xa14 and Xa31(t) are mapped on rice chromosome 4, of which Xa1, Xa2 and Xa31(t) have been localized within the same region between G235 and C600. (Wang et al. 2009)	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8119	XA32	Xa32	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 32	Xanthomonas oryzae pv. oryzae resistance 32			11		 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium		
8120	XA22	Xa22, Xa22*, RXa20, Xa(t), Xa22(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 22	Xanthomonas oryzae pv. oryzae resistance 22, Xanthomonas campestris pv. oryzae resistance-22, Xanthomonas oryzae pv. oryzae resistance-22, Xa22 candidate			11	The new gene Xa22(t) is mapped at a distance >7.0 cM from R543 near the telomeric region of chromosome 11 (Lin et al. 1996). The Xa22(t) locus was mapped to a 100kb interval delimited by the R1506 and a subclone from the M3H8 BAC clone (Wang et al. 2003). These results suggest that LOC_Os11g46250 encoding an expressed protein of un- known function is the most likely candidate for Xa22 (Zhang et al. 2021).	 Tolerance and resistance - Disease resistance	Os11g0689500/Os11g0689650	LOC_Os11g46250.1	GR:0061030			GO:0040029 - regulation of gene expression, epigenetic, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
8121	ADART	aDart	AUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON	autonomous DNA-based active rice transposon					 Other						GO:0032196 - transposition		
8122	ALT9	Alt-9, qPRE-9	ALUMINIUM TOLERANCE 9	alminium tolerance 9		Alt-9	9		 Tolerance and resistance - Stress tolerance						GO:0010038 - response to metal ion		
8123	CRL4	CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP	CHASE DOMAIN RECEPTOR-LIKE SERINE/THREONINE KINASE	CHASE domain receptor-like serine/threonine kinase, CHASE domain protein	CHASE DOMAIN RECEPTOR-LIKE SERINE/THREONINE KINASE		12	AB246779. cytokinin receptor.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0454800	LOC_Os12g26940.1				GO:0009736 - cytokinin mediated signaling, GO:0004872 - receptor activity, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
8124	CHT10	Cht10	CHITINASE 10	Chitinase10, Chitinase 10, Pathogenesis related (PR)-3 chitinase 10, Pathogenesis related-3 chitinase 10, PR-3 chitinase 10	CHITINASE 10		1	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q5NB11.	 Biochemical character	Os01g0287600	LOC_Os01g18400.1				GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process		
8125	CHT11	Cht11, PR3, OsCHT11	CHITINASE 11	Chitinase11, Chitinase 11, Pathogenesis related (PR)-3 chitinase 11, Pathogenesis related-3 chitinase 11, PR-3 chitinase 11	CHITINASE 11		3	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q10S66.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0132900	LOC_Os03g04060.1				GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0004568 - chitinase activity		
8127	CHT5	Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3	CHITINASE 5	Chitinase5, Chitinase 5, Pathogenesis related (PR)-3 chitinase 5, Pathogenesis related-3 chitinase 5, PR-3 chitinase 5, Class IV chitinase a, Chitinase IVa, Endochitinase A	CHITINASE 5		4	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q7Y1Z0. EU850802 (Oryza grandiglumis PR-3 (OgChitIVa)). BAC76691. Endochitinase A in Sudo et al. 2008. LOC_Os04g41680. CHIT3 in Liu et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0494100	LOC_Os04g41680.1	GR:0060137			GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0006952 - defense response, GO:0008061 - chitin binding, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
8128	CHT6	Cht6	CHITINASE 6	Chitinase6, Chitinase 6, Pathogenesis related (PR)-3 chitinase 6, Chitinase-6	CHITINASE 6		2	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q6K8R2.	 Biochemical character	Os02g0605900	LOC_Os02g39330.1				GO:0006952 - defense response, GO:0008061 - chitin binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process		
8130	CHT8	Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14, OsPR3	CHITINASE 8	Chitinase8, Chitinase 8, Pathogenesis related (PR)-3 chitinase 8, Pathogenesis related-3 chitinase 8, PR-3 chitinase 8, Class II chitinase a	CHITINASE 8		10	PR-3 chitinase, pathogenesis related 3 chitinase. EC=3.2.1.14 Q7XCK6. L40338. AB016497. CHIT14 in Liu et al. 2018, Wu et al. 2019.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0542900	LOC_Os10g39680.1				GO:0004568 - chitinase activity, GO:0006032 - chitin catabolic process, GO:0016998 - cell wall macromolecule catabolic process, GO:0042742 - defense response to bacterium	TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance	
8131	CHT9	Cht9, OsCht9, Cht1, OsChi19A, Chi19A	CHITINASE 9	Chitinase9, Chitinase 9, Pathogenesis related (PR)-3 chitinase 9, Chitinase-9	CHITINASE 9		5	PR-3 chitinase, pathogenesis related 3 chitinase. Q688M5. BGIOSGA019833 (indica). EC=3.2.1.14. GH19 chitinase family. OsChi19A in Shobade et al. 2024.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os05g0399400	LOC_Os05g33140.1				GO:0006952 - defense response, GO:0004568 - chitinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0006032 - chitin catabolic process, GO:0008061 - chitin binding, GO:0002215 - defense response to nematode, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009624 - response to nematode	TO:0000384 - nematode damage resistance	
8132	COW1	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsNAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7	CONSTITUTIVELY WILTED 1	CONSTITUTIVELY WILTED1, Constitutively wilted 1, NARROW LEAF7, NARROW LEAF 7, YUCCA-LIKE GENE 8, flavin monooxygenase, rice ethylene-insensitive 7		cow1, cow1-1, cow1-2, nal7, rein7, rein7-1, rein7-2, osyuc8-2, Osyuc8	3	AB354302, AB354301. HQ443270, HQ443271. a member of the rice YUCCA gene family. GO:2000024: regulation of leaf development. TO:0020106: Indole-3-acetic acid content. an orthologue of AtYUCCA. GO:0090351: seedling development. TO:0006064: rolled leaf.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf	Os03g0162000	LOC_Os03g06654.2, LOC_Os03g06654.1				GO:0009851 - auxin biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity, GO:0005654 - nucleoplasm, GO:0005829 - cytosol, GO:0048366 - leaf development, GO:0047434 - indolepyruvate decarboxylase activity, GO:0051607 - defense response to virus, GO:0007275 - multicellular organismal development, GO:0009734 - auxin mediated signaling pathway, GO:0050661 - NADP or NADPH binding, GO:0009873 - ethylene mediated signaling pathway, GO:0050660 - FAD binding, GO:0000139 - Golgi membrane, GO:0048364 - root development, GO:0022603 - regulation of anatomical structure morphogenesis, GO:0048825 - cotyledon development, GO:0010229 - inflorescence development, GO:0030104 - water homeostasis, GO:0009911 - positive regulation of flower development	TO:0000227 - root length, TO:0000656 - root development trait, TO:0000492 - leaf shape, TO:0000148 - viral disease resistance, TO:0000655 - leaf development trait	PO:0007520 - root development stage , PO:0009047 - stem , PO:0000025 - root tip , PO:0020141 - stem node , PO:0025034 - leaf 
8133	COX-1	COX-1	CYCLOOXYGENASE 1		CYCLOOXYGENASE 1				 Biochemical character						GO:0004666 - prostaglandin-endoperoxide synthase activity		
8134	COX-2	COX-2	CYCLOOXYGENASE 2		CYCLOOXYGENASE 2				 Biochemical character						GO:0004666 - prostaglandin-endoperoxide synthase activity		
8135	DART	Dart	DNA-BASED ACTIVE RICE TRANSPOSON	DNA-based active rice transposon				AB206820.	 Other						GO:0032196 - transposition		
8136	GHD7	Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7, GLW7.1, OsGLW7.1	HEADING DATE 7	"heading date 7, \"Grain number, plant height, and heading date7\", \"GRAIN NUMBER, PLANT HEIGHT AND HEADING DATE 7\", CCT domain-containing gene 26, CCT (CO, CO-LIKE and TOC1) domain protein 26, CCT domain protein 26, CCT MOTIF FAMILY (CMF) gene 8, Early heading 7, \"Grain Length, Width and Weight 7.1\", Grain height date 7"	CCT DOMAIN PROTEIN	Ghd7-0, Ghd7-0a, Ghd7-1, Ghd7-2, Ghd7-3, Ghd7-4, Ghd7-5, Ghd7-6, Ghd7-7, ghd7, eh7, ghd7-2, oscct26, oscct26-1, oscct26-2, oscct26-3	7	EU286800(Minghui 63 genomic), EU286801(Minghui 63 mRNA). OsI_25572. CCT domain protein. JF926532-JF926543 (Indica and Japonica). MT453138 - MT453268. flowering time gene. TO:0020093: nitrogen content. TO:0001069: cooking quality trait. TO:0000975: grain width.	 Seed - Physiological traits,  Reproductive organ - Heading date,  Heterochrony,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits - Taste	Os07g0261200	LOC_Os07g15770.1				GO:0009648 - photoperiodism, GO:0010229 - inflorescence development, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009416 - response to light stimulus, GO:0007623 - circadian rhythm, GO:0009740 - gibberellic acid mediated signaling, GO:0030307 - positive regulation of cell growth, GO:0051781 - positive regulation of cell division, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0048573 - photoperiodism, flowering	TO:0002759 - grain number, TO:0000229 - photoperiod sensitivity, TO:0000447 - filled grain number, TO:0000050 - inflorescence branching, TO:0000590 - grain weight, TO:0002675 - gibberellic acid content, TO:0000456 - spikelet number, TO:0000266 - chalky endosperm, TO:0000137 - days to heading, TO:0000196 - amylose content, TO:0000207 - plant height, TO:0000211 - gel consistency, TO:0000557 - secondary branch number, TO:0000449 - grain yield per plant, TO:0000152 - panicle number, TO:0000397 - grain size, TO:0000621 - inflorescence development trait, TO:0000382 - 1000-seed weight, TO:0002616 - flowering time, TO:0000734 - grain length, TO:0000469 - days to maturity	PO:0001083 - inflorescence development stage 
8137	GIF1	gif1, CIN2, OsCIN2, OsGIF1, WB1, OsWB1, GIF1/OsCIN2	GRAIN  INCOMPLETE FILLING 1	"grain incomplete filling 1, \"Beta-fructofuranosidase, insoluble isoenzyme 2\", Sucrose hydrolase 2, Invertase 2, Cell wall beta-fructosidase 2, cell-wall invertase 2, White Belly 1"	CELL WALL BETA-FRUCTOSIDASE 2	gif1, wb1	4	EC=3.2.1.26 AY578159. AY340072. Q01IS7(indica). Q0JDC5(japonica). GRO:0007141; C-embryo stage. GU797900-GU797949 (O. sativa and other wild rice species). AY575549. EU095553-EU095596 (O. sativa and O. rufipogon). GO:2000014: regulation of endosperm development. TO:0001068: processing quality trait.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Taste,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os04g0413500	LOC_Os04g33740.1	GR:0080062			GO:0005618 - cell wall, GO:0016787 - hydrolase activity, GO:0004564 - beta-fructofuranosidase activity, GO:0051707 - response to other organism, GO:0048046 - apoplast, GO:0005986 - sucrose biosynthetic process, GO:0009960 - endosperm development, GO:0004575 - sucrose alpha-glucosidase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005987 - sucrose catabolic process, GO:0005975 - carbohydrate metabolic process	TO:0000590 - grain weight, TO:0000311 - invertase activity, TO:0000097 - amylopectin content, TO:0000592 - 1000-dehulled grain weight, TO:0002656 - starch grain shape, TO:0000146 - seed length, TO:0000456 - spikelet number, TO:0000149 - seed width, TO:0006005 - fructose content, TO:0000304 - seed thickness, TO:0002661 - seed maturation, TO:0000300 - glucose content, TO:0000575 - endosperm related trait, TO:0000221 - glume color, TO:0000696 - starch content, TO:0000162 - seed quality, TO:0000396 - grain yield, TO:0000196 - amylose content, TO:0000487 - endosperm color, TO:0000266 - chalky endosperm, TO:0000328 - sucrose content, TO:0000455 - seed set percent, TO:0000397 - grain size, TO:0000391 - seed size, TO:0000447 - filled grain number	PO:0007633 - endosperm development stage , PO:0005019 - carpel vascular system , PO:0000025 - root tip , PO:0009084 - pericarp , PO:0006326 - inflorescence internode , PO:0009089 - endosperm 
8139	NDART1	nDart, nDART1, nDART	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1	nonautonomous DNA-based active rice transposon, Nonautonomous Ds-related active rice transposon					 Other			GR:0061481			GO:0032196 - transposition		
8141	HK2	OHK1, HK, OsHK2, Ohk1	HISTIDINE KINASE 1	histidine kinase 1	HISTIDINE KINASE 1		6	BR000243, His-Kinase domain, Receiver domain. LOC_Os06g08450.	 Biochemical character	Os06g0183200	LOC_Os06g08450.1				GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0000156 - two-component response regulator activity, GO:0004673 - protein histidine kinase activity, GO:0018106 - peptidyl-histidine phosphorylation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000155 - two-component sensor activity		
8142	HK3	OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b, OsHK03	HISTIDINE KINASE 3	histidine kinase 3, His kinase 3	HISTIDINE KINASE 3		1	BR000244. cytokinin receptor. CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). two-component element. the ortholog of AtHK1.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0923700 	LOC_Os01g69920.1, LOC_Os01g69920.2, LOC_Os01g69920.3				GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0004673 - protein histidine kinase activity, GO:0000155 - two-component sensor activity, GO:0009735 - response to cytokinin stimulus, GO:0009736 - cytokinin mediated signaling, GO:0000156 - two-component response regulator activity, GO:0009737 - response to abscisic acid stimulus	TO:0002657 - oxidative stress, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	
8143	HK5	OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2	HISTIDINE KINASE 5	histidine kinase 5, His kinase 5	HISTIDINE KINASE 5		10	AB246778, BR000245. cytokinin receptor.CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). LOC_Os10g21810. two-component element. 	 Biochemical character	Os10g0362300	LOC_Os10g21810.1, LOC_Os10g21810.2				GO:0018106 - peptidyl-histidine phosphorylation, GO:0004673 - protein histidine kinase activity, GO:0016020 - membrane, GO:0000156 - two-component response regulator activity, GO:0005524 - ATP binding, GO:0000155 - two-component sensor activity, GO:0006355 - regulation of transcription, DNA-dependent		
8144	HK4	OHK4, HK, OsHK4, Crl1b, Ohk4	HISTIDINE KINASE 4	histidine kinase 4, His kinase 4	HISTIDINE KINASE 4		3	BR000246. cytokinin receptor. CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). two-component element. 	 Biochemical character	Os03g0717700	LOC_Os03g50860.1				GO:0005524 - ATP binding, GO:0000155 - two-component sensor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0018106 - peptidyl-histidine phosphorylation, GO:0016020 - membrane, GO:0004673 - protein histidine kinase activity, GO:0000156 - two-component response regulator activity		
8145	CKT1	OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1	CYTOKININ TOLERANT 1 	histidine kinase 6, His kinase 6, cytokinin tolerant 1	HISTIDINE KINASE 6	Osckt1	2	BR000247. cytokinin receptor. CHASE domain for cytokinin binding, His-kinase domain (HK), Receiver domain (Rec). LOC_Os02g50480. two-component element. GO:2000280: regulation of root development. GO:2000904: regulation of starch metabolic process.	 Vegetative organ - Root,  Biochemical character	Os02g0738400	LOC_Os02g50480.1				GO:0016020 - membrane, GO:0048364 - root development, GO:0043455 - regulation of secondary metabolic process, GO:0018106 - peptidyl-histidine phosphorylation, GO:0015995 - chlorophyll biosynthetic process, GO:0010109 - regulation of photosynthesis, GO:0009884 - cytokinin receptor activity, GO:0009736 - cytokinin mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0005985 - sucrose metabolic process, GO:0005982 - starch metabolic process, GO:0005783 - endoplasmic reticulum, GO:0000155 - two-component sensor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005524 - ATP binding, GO:0000156 - two-component response regulator activity, GO:0004673 - protein histidine kinase activity	TO:0000167 - cytokinin sensitivity, TO:0000656 - root development trait	PO:0000025 - root tip , PO:0020121 - lateral root , PO:0000027 - lateral root tip , PO:0007520 - root development stage , PO:0005029 - root primordium 
8146	AHP1	OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, HP2, OsHpt2, OsHPt2, OsHP02	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1	histidine containing phosphotransmitter, authentic His-containing phosphotransfer protein 1, Authentic Histidine Phosphotransfer protein 1	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1	histidine containing phosphotransmitter, Osahp1	8	BR000248. Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Root,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os08g0557700	LOC_Os08g44350.1				GO:0009735 - response to cytokinin stimulus, GO:0004871 - signal transducer activity, GO:0009736 - cytokinin mediated signaling, GO:0009723 - response to ethylene stimulus, GO:0000160 - two-component signal transduction system (phosphorelay)	TO:0000173 - ethylene sensitivity, TO:0000207 - plant height, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000227 - root length, TO:0000346 - tiller number, TO:0000167 - cytokinin sensitivity, TO:0000420 - fertility related trait, TO:0000249 - leaf senescence	PO:0000230 - inflorescence meristem , PO:0020148 - shoot apical meristem 
8147	AHP2	OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, HP1, OsHpt3, OsHP01	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2	histidine containing phosphotransmitter, authentic His-containing phosphotransfer protein 2, histidine phosphotransfer protein 2	HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2	histidine containing phosphotransmitter, Osahp2	9	BR000249. Q6VAK4. Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.	 Vegetative organ - Leaf,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os09g0567400	LOC_Os09g39400.2, LOC_Os09g39400.1				GO:0004871 - signal transducer activity, GO:0009723 - response to ethylene stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009735 - response to cytokinin stimulus, GO:0009736 - cytokinin mediated signaling	TO:0000173 - ethylene sensitivity, TO:0000207 - plant height, TO:0000420 - fertility related trait, TO:0000249 - leaf senescence, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000167 - cytokinin sensitivity, TO:0000227 - root length, TO:0000346 - tiller number, TO:0000656 - root development trait	PO:0000230 - inflorescence meristem , PO:0020148 - shoot apical meristem 
8148	RR21	OsRR21, Rrb1, Orr1, OsRR19, RR19, OsRRB1, ORR1	B-TYPE RESPONSE REGULATOR 1	B-type response regulator 1, B-type RR 1, ORYZA SATIVA RESPONSE REGULATOR 1	B-TYPE RESPONSE REGULATOR 1		3	BR000250, AB246780. B-type RR. OsRR19 in Ga et al. 2021, Hu et al. 2023.	 Heterochrony,  Vegetative organ - Root	Os03g0224200	LOC_Os03g12350.1, LOC_Os03g12350.2, LOC_Os03g12350.4				GO:0005634 - nucleus, GO:0009736 - cytokinin mediated signaling, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity, GO:0000160 - two-component signal transduction system (phosphorelay)	TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity	
8149	HST1	RR22, OsRR22, Rrb4, Orr2, OsRR20, OsRRB4, OsHST1	HITOMEBORE SALT TOLERANT 1	B-type response regulator 2, B-type RR 4, hitomebore salt tolerant 1	B-TYPE RESPONSE REGULATOR 2		6	BR000251. B-type RR. OsRR22 in Saha et al. 2024.	 Tolerance and resistance - Stress tolerance,  Heterochrony	Os06g0183100	LOC_Os06g08440.1				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0045449 - regulation of transcription, GO:0006970 - response to osmotic stress, GO:0000156 - two-component response regulator activity, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009735 - response to cytokinin stimulus, GO:0010446 - response to alkalinity	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000481 - alkali sensitivity	
8150	RR23	OsRR23, Rrb5, Orr3, OsRR18, RR18, OsRRB5	B-TYPE RESPONSE REGULATOR 3	B-type response regulator 3, B-type RR 5	B-TYPE RESPONSE REGULATOR 3		2	BR000252, B-type RR. OsRR18 in Ga et al. 2021.	 Heterochrony	Os02g0796500	LOC_Os02g55320.1				GO:0009735 - response to cytokinin stimulus, GO:0009736 - cytokinin mediated signaling, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0005634 - nucleus, GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription	TO:0000167 - cytokinin sensitivity	
8151	DLC1	RR24, OsRR24, Rrb2, Orr4, OsRR17, RR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1, OsDLC1	DEFECTIVE LEPTOTENE CHROMOSOME 1	B-type response regulator 4, B-type RR 2, LEPTOTENE1, LEPTOTENE 1, Defective Leptotene Chromosome 1	B-TYPE RESPONSE REGULATOR 4	lepto1, dlc1	2	BR000253. B-type RR. OsRR17 in Ga et al. 2021.	 Heterochrony,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os02g0182100	LOC_Os02g08500.1				GO:0042138 - meiotic DNA double-strand break formation, GO:0045449 - regulation of transcription, GO:0052543 - callose deposition in cell wall, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009736 - cytokinin mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0009554 - megasporogenesis, GO:0000156 - two-component response regulator activity, GO:0048653 - anther development, GO:0012501 - programmed cell death, GO:0009555 - pollen development, GO:0051276 - chromosome organization, GO:0000237 - leptotene	TO:0000485 - sterility related trait, TO:0000167 - cytokinin sensitivity	PO:0025313 - tapetum 
8152	RR25	OsRR25, Rrb3, Orr5, OsORR5, OsRR21, OsRRB3	B-TYPE RESPONSE REGULATOR 5	B-type response regulator 5, B-type RR 3	B-TYPE RESPONSE REGULATOR 5		6	BR000254. B-type RR.	 Heterochrony	Os06g0647200	LOC_Os06g43910.1, LOC_Os06g43920.1				GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay)		
8153	RR26	OsRR26, Rrb6, Orr6, OsRR16, RR16, OsRRB6	B-TYPE RESPONSE REGULATOR 6	B-TYPE response regulator 6, B-type RR 6	B-TYPE RESPONSE REGULATOR 6		1	BR000255. B-type RR. mesocotyl length candidate gene. OsRR16 in Ga et al. 2021, Hu et al. 2023.	 Heterochrony	Os01g0904700 	LOC_Os01g67770.1				GO:0000156 - two-component response regulator activity, GO:0009736 - cytokinin mediated signaling, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009735 - response to cytokinin stimulus, GO:0045449 - regulation of transcription, GO:0005634 - nucleus	TO:0000167 - cytokinin sensitivity	
8154	RR1	rr1, OsRR1, Rra9, OsRRA9	A-TYPE RESPONSE REGULATOR 1	A-TYPE response regulator 1, Type A response regulator 1, A-type RR 9	A-TYPE RESPONSE REGULATOR 1		4	A-type RR. BR000311. AB249661. 	 Reproductive organ - Heading date	Os04g0442300	LOC_Os04g36070.1	GR:0020055			GO:0000160 - two-component signal transduction system (phosphorelay), GO:2000028 - regulation of photoperiodism, flowering, GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000137 - days to heading	
8155	RR10	OsRR10, Rra2, OsRRA2, RR2	A-TYPE RESPONSE REGULATOR 10	A-TYPE response regulator 10, A-type RR 2	A-TYPE RESPONSE REGULATOR 10		12	BR000257. AB249660. A-type RR.	 Tolerance and resistance - Stress tolerance	Os12g0139400	LOC_Os12g04500.1				GO:0009611 - response to wounding, GO:0006970 - response to osmotic stress, GO:0045449 - regulation of transcription, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	
8156	RR11	OsRR11, Rra8, OsRRA8, RR8	A-TYPE RESPONSE REGULATOR 11	A-TYPE response regulator 11, A-type RR 8	A-TYPE RESPONSE REGULATOR 11		2	BR000318. AB249656. A-type RR.		Os02g0631700 	LOC_Os02g42060.1				GO:0000156 - two-component response regulator activity, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009733 - response to auxin stimulus, GO:0045449 - regulation of transcription, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
8157	RR12	OsRR12, Rra11, OsRR8, RR8, OsRRA11	A-TYPE RESPONSE REGULATOR 12	A-TYPE response regulator 12, A-type RR 11	A-TYPE RESPONSE REGULATOR 12		8	LOC_Os08g28950. BR000319, AB249664. A-type RR. 		Os08g0377200 	LOC_Os08g28950.1				GO:0009735 - response to cytokinin stimulus, GO:0007593 - chitin-based cuticle tanning, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription	TO:0000167 - cytokinin sensitivity	
8158	RR13	OsRR13, Rra12, OsRR12, OsRRA12, RR12	A-TYPE RESPONSE REGULATOR 13	A-TYPE response regulator 13, A-type RR 12	A-TYPE RESPONSE REGULATOR 13		8	LOC_Os08g26990. BR000320. AB249665. A-type RR.		Os08g0358800 	LOC_Os08g26990.1				GO:0045449 - regulation of transcription, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009735 - response to cytokinin stimulus, GO:0000156 - two-component response regulator activity	TO:0000167 - cytokinin sensitivity	
8159	RR2	rr2, Osrr2, OsRR2, Rra10, OsRRA10	A-TYPE RESPONSE REGULATOR 2	A-TYPE response regulator 2, Type A response regulator 2, A-type RR 10	A-TYPE RESPONSE REGULATOR 2		2	A-type RR. BR000312. AB249662. 	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0557800	LOC_Os02g35180.1	GR:0020056			GO:0009736 - cytokinin mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0048364 - root development, GO:0045449 - regulation of transcription, GO:0070482 - response to oxygen levels, GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0000259 - heat tolerance, TO:0000015 - oxygen sensitivity	PO:0007504 - crown root primordium formation stage 
8160	RR3	OSRR3, OsRR3, rr3, Rra7, OsRRA7	A-TYPE RESPONSE REGULATOR 3	A-TYPE response regulator 3, Type A response regulator 3, A-type RR 7	A-TYPE RESPONSE REGULATOR 3		2	BR000313. AJ938072, AP004043. AB249655. A-type RR.		Os02g0830200	LOC_Os02g58350.1	GR:0020057			GO:0009536 - plastid, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009733 - response to auxin stimulus, GO:0045449 - regulation of transcription, GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
8161	RR4	rr4, OsRR4, Rra3, OsRRA3	A-TYPE RESPONSE REGULATOR 4	A-TYPE response regulator 4, Type A response regulator 4, A-type RR 3	A-TYPE RESPONSE REGULATOR 4		1	A-type RR. BR000258. AB249658. an osa-miR1439 target gene.	 Tolerance and resistance - Stress tolerance	Os01g0952500	LOC_Os01g72330.1	GR:0020058			GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0045449 - regulation of transcription, GO:0009733 - response to auxin stimulus, GO:0010446 - response to alkalinity, GO:0009651 - response to salt stress, GO:0009736 - cytokinin mediated signaling	TO:0000167 - cytokinin sensitivity, TO:0000481 - alkali sensitivity, TO:0000163 - auxin sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
8162	RR5	rr5, OsRR5, Rra4, OsRRA4	A-TYPE RESPONSE REGULATOR 5	A-TYPE response regulator 5, Type A response regulator 5, A-type RR 4	A-TYPE RESPONSE REGULATOR 5		4	A-type RR. BR000314. AB249654. GO:1902347: response to strigolactone.		Os04g0524300	LOC_Os04g44280.1	GR:0020059			GO:0009735 - response to cytokinin stimulus, GO:0005739 - mitochondrion, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription	TO:0000167 - cytokinin sensitivity	
8163	RR6	OsRR6, rr6, Rra6, OsRRA6	A-TYPE RESPONSE REGULATOR 6	A-TYPE response regulator 6, Type A response regulator 6, A-type RR 6	A-TYPE RESPONSE REGULATOR 6		4	BR000315. AB249653.	 Tolerance and resistance - Stress tolerance	Os04g0673300	LOC_Os04g57720.1	GR:0020060			GO:0009735 - response to cytokinin stimulus, GO:0006970 - response to osmotic stress, GO:0009611 - response to wounding, GO:0005739 - mitochondrion, GO:0009733 - response to auxin stimulus, GO:0010446 - response to alkalinity, GO:0045449 - regulation of transcription, GO:0009536 - plastid, GO:0009408 - response to heat, GO:0000156 - two-component response regulator activity, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009736 - cytokinin mediated signaling, GO:0000160 - two-component signal transduction system (phosphorelay)	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000259 - heat tolerance, TO:0000481 - alkali sensitivity	
8164	RR7	rr7, OsRR7, Rra5, OsRRA5	A-TYPE RESPONSE REGULATOR 7	A-TYPE response regulator 7, Type A response regulator 7, A-type RR 5, ARABIDOPSIS- RESPONSE-REGULATOR5	A-TYPE RESPONSE REGULATOR 7		7	A-type RR. BR000316. AB249657. Q0PVB3.		Os07g0449700	LOC_Os07g26720.1, LOC_Os07g26720.2	GR:0020061			GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009723 - response to ethylene stimulus, GO:0045449 - regulation of transcription, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0000156 - two-component response regulator activity	TO:0000173 - ethylene sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009005 - root 
8165	RR8	rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13	A-TYPE RESPONSE REGULATOR 8	A-TYPE response regulator 8, Type A response regulator 8, A-type RR 13	A-TYPE RESPONSE REGULATOR 8		8	A-type RR. BR000317. AB249663. OsRR8 and OsRR15 in Tao et al. 2017.		Os08g0376700	LOC_Os08g28900.1	GR:0020062			GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0000156 - two-component response regulator activity, GO:0045449 - regulation of transcription	TO:0000167 - cytokinin sensitivity	
8166	RR9	OsRR9, Rra1, OsRRA1, OsRR10, RR10	A-TYPE RESPONSE REGULATOR 9	A-TYPE response regulator 9, A-type RR 1	A-TYPE RESPONSE REGULATOR 9		11	BR000256. A-type RR. OsRR10 in Li et al. 2016. 	 Tolerance and resistance - Stress tolerance	Os11g0143300	LOC_Os11g04720.1, LOC_Os11g04720.2				GO:0009611 - response to wounding, GO:0009733 - response to auxin stimulus, GO:0009609 - response to symbiotic bacterium, GO:0000156 - two-component response regulator activity, GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0000160 - two-component signal transduction system (phosphorelay), GO:0009753 - response to jasmonic acid stimulus, GO:0045449 - regulation of transcription	TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009005 - root 
8167	SPL17	spl17	SPOTTED LEAF 17	spotted leaf 17					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8168	SPL18	Spl18, OsAT1, AT1	SPOTTED LEAF 18	spotted leaf 18	ACYLTRANSFERASE 1		10	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os10g0195600	LOC_Os10g11980.1				GO:0009626 - plant-type hypersensitive response, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0000063 - mimic response, TO:0002670 - momilactone A content, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
8169	SPL19	spl19	SPOTTED LEAF 19	spotted leaf 19					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8170	SPL20	spl20	SPOTTED LEAF 20	spotted leaf 20					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8171	SPL21	spl21	SPOTTED LEAF 21	spotted leaf 21					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8172	SPL22	spl22	SPOTTED LEAF 22	spotted leaf 22					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8173	SPL23	spl23	SPOTTED LEAF 23	spotted leaf 23					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8174	SPL24	Spl24	SPOTTED LEAF 24	spotted leaf 24					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8175	SPL25	spl25	SPOTTED LEAF 25	spotted leaf 25					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8176	SPL26	Spl26	SPOTTED LEAF 26	spotted leaf 26					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8177	SPL27	Spl27	SPOTTED LEAF 27	spotted leaf 27					 Tolerance and resistance - Lesion mimic						GO:0006952 - defense response		
8179	YUCCA9	OsYUCCA9, OsYUC9, YUC9	YUCCA-LIKE GENE 9	(YUCCA-like gene)		osyuc9, osyuc9-1, osyuc9-2, osyuc9-3	1	an orthologue of AtYUCCA. PO:0030104: caryopsis fruit. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Biochemical character	Os01g0273800	LOC_Os01g16714.1				GO:0009851 - auxin biosynthetic process, GO:0048316 - seed development, GO:0004499 - flavin-containing monooxygenase activity	TO:0000266 - chalky endosperm, TO:0002672 - auxin content, TO:0000653 - seed development trait	PO:0009047 - stem , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009006 - shoot system , PO:0009005 - root , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
8180	AM1	OsAM1, prx53, OsPRX53	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 1	class III peroxidase 53	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 1		4	BN000595. GO:0036377: arbuscular mycorrhizal association.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Root	Os04g0134800	LOC_Os04g04750.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		
8181	AM2	OsAM2, OsPI8-1a, PI8-1a	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 2	proteinase inhibitor 8-1a	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 2		8	GO:0036377: arbuscular mycorrhizal association. In the reference genome sequence of O. sativa spp. japonica cv. Nipponbare, we found that another locus, Loc_Os08g34249, is identical in DNA sequence to OsMTD1, a gene previously reported responsible for tillering in rice. (Liu et al. 2021)	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os08g0441200	LOC_Os08g34249.1				GO:0009611 - response to wounding, GO:0048658 - tapetal layer development, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009845 - seed germination, GO:0009610 - response to symbiotic fungus, GO:0012501 - programmed cell death	TO:0000357 - growth and development trait	PO:0009047 - stem , PO:0001004 - anther development stage , PO:0007057 - 0 seed germination stage , PO:0020148 - shoot apical meristem , PO:0020002 - anther wall endothecium 
8182	AM3	OsAM3, OsLysMe2, LysMe2	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 3	LysM extracellular 2, lysin motif extracellular 2	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 3		1	GO:0036377: arbuscular mycorrhizal association. common symbiotic pathway.	 Vegetative organ - Root	Os01g0783000	LOC_Os01g57400.1				GO:0009610 - response to symbiotic fungus, GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8183	AM10	AM10	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 10		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 10		5		 Vegetative organ - Root	Os05g0289700	LOC_Os05g22300.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8184	AM11	AM11	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 11		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 11		6	LOC_Os06g20120. GO:0036377: arbuscular mycorrhizal association. common symbiotic pathway.	 Vegetative organ - Root	Os06g0305400	LOC_Os06g20120.1, LOC_Os06g20110.1				GO:0009610 - response to symbiotic fungus, GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8185	AM14	OsAM14, OsARK1, ARK1	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 14	ARBUSCULAR RECEPTOR-LIKE KINASE 1	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 14	ark1	11		 Vegetative organ - Root	Os11g0448200	LOC_Os11g26140.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus, GO:0075328 - formation by symbiont of arbuscule for nutrient acquisition from host		
8186	AM15	OsAM15	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 15		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 15		1		 Vegetative organ - Root	Os01g0782901	LOC_Os01g57390.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8187	GRAS16	AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16, PsiOsGRAS4, PsiGRAS4	GRAS PROTEIN 16	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 18, GRAS protein 16	GRAS PROTEIN 16		3	PsiOsGRAS4 Dutta et al. 2021. Os03g0597900 (in Rap3 (build5)).	 Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance		LOC_Os03g40080				GO:0050832 - defense response to fungus, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium	TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
8188	AM20	AM20	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 20		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 20		4	Os04g21160	 Vegetative organ - Root	Os04g0280600	LOC_Os04g21160.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8189	AM24	AM24	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 24		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 24		2	Os02g03190	 Vegetative organ - Root	Os02g0124300	LOC_Os02g03190.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8190	AM25	AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 25	Aquaporin NIP1-4, NOD26-like intrinsic protein 1-4	AQUAPORIN NIP1-4		6	AP003682, Q5Z9E2. LOC_Os06g35930.	 Vegetative organ - Root,  Biochemical character	Os06g0552700	LOC_Os06g35930.1				GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0055085 - transmembrane transport		
8191	AM26	AM26	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 26		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 26		12	Os12g30300	 Vegetative organ - Root	Os12g0487250					GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8192	AM29	AM29, OsRING405, RING405	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 29	RING-type E3 ubiquitin ligase 405	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 29		6	Os06g34470	 Vegetative organ - Root	Os06g0535900	LOC_Os06g34470.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8193	AM31	AM31	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 31		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 31		2	Os02g03150	 Vegetative organ - Root	Os02g0124000	LOC_Os02g03150.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8194	AM34	AM34	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 34		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 34		10	LOC_Os10g18510. Os10g0331700 (in Rap2 (build4)).	 Vegetative organ - Root	Os10g0332000	LOC_Os10g18510.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8195	AM39	AM39	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 39		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 39		4	Os04g13090	 Vegetative organ - Root	Os04g0207600	LOC_Os04g13090.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8196	AM42	AM42	ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 42		ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 42		3	Os03g38600	 Vegetative organ - Root	Os03g0582300	LOC_Os03g38600.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8197	BAD1	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5	BETAINE ALDEHYDE DEHYDROGENASE 1	betaine aldehyde dehydrogenase 1, Aldehyde dehydrogenase 10A5	BETAINE ALDEHYDE DEHYDROGENASE 1		4	O24174. DQ234303. KC609097-KC609109 (O. sativa and wild rice species, partial cds).	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Taste,  Biochemical character	Os04g0464200	LOC_Os04g39020.1				GO:0009408 - response to heat, GO:0019285 - glycine betaine biosynthetic process from choline, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005777 - peroxisome, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0010037 - response to carbon dioxide, GO:0009416 - response to light stimulus, GO:0008802 - betaine-aldehyde dehydrogenase activity, GO:0005618 - cell wall	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000087 - aroma, TO:0000075 - light sensitivity, TO:0000286 - submergence sensitivity	
8199	CASTOR	Os-CASTOR	CASTOR	Probable ion channel DMI1-like, chloroplastic	CATION CHANNEL PROTEIN		3	Os03g62650. CATION CHANNEL PROTEIN. Q75LD5.	 Biochemical character	Os03g0843600	LOC_Os03g62650.1, LOC_Os03g62650.2, LOC_Os03g62650.3				GO:0005216 - ion channel activity, GO:0006811 - ion transport, GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0005488 - binding, GO:0016021 - integral to membrane, GO:0009507 - chloroplast		
8202	HWH1	hwh1	HYBRID WEAKNESS H1	hybrid weakness h1	GMC OXIDOREDUCTASE	hwh1, Hwh1	2	LOC_Os02g40840	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os02g0621800	LOC_Os02g40840.1				GO:0048544 - recognition of pollen, GO:0007275 - multicellular organismal development		
8203	HWH2	OsHWH2, AZT5, OsAZT5	HYBRID WEAKNESS H2	hybrid weakness h2, PUTATIVE HEXOSE TRANSPORTER PROTEIN, AZT protein 5, AZT-type monosaccharide transporter 5, monosaccharide transporter AZT5	AZT PROTEIN 5	hwh2, Hwh2	11		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Biochemical character	Os11g0475600	LOC_Os11g28610.1				GO:0007275 - multicellular organismal development, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0048544 - recognition of pollen		
8204	NUP85	NUP85	NUCLEAR PORIN 85		NUCLEAR PORIN 85		1	Os01g54240	 Biochemical character	Os01g0746200	LOC_Os01g54240.1, LOC_Os01g54240.2				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0017056 - structural constituent of nuclear pore		
8205	NUP133	NUP133	NUCLEAR PORIN 133		NUCLEAR PORIN 133		3	Os03g12450	 Biochemical character	Os03g0225500	LOC_Os03g12450.1				GO:0017056 - structural constituent of nuclear pore, GO:0044403 - symbiosis, encompassing mutualism through parasitism		
8206	POLLUX	OsPOLLUX, Os-POLLUX, DMI1, OsDMI1	POLLUX	"\"Probable ion channel DMI1, chloroplastic\", ion channel DMI1"	CATION CHANNEL PROTEIN		1	CATION CHANNEL PROTEIN. Q5N941.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0870100	LOC_Os01g64980.1, LOC_Os01g64980.2				GO:0009414 - response to water deprivation, GO:0003824 - catalytic activity, GO:0005488 - binding, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0009269 - response to desiccation, GO:0008152 - metabolic process, GO:0006810 - transport	TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity	
8207	SAF	SaF, OsFbox019, OsFbox19, Os_F0070, OsFBD1, FBD1	HYBRID STERILITY	Hybrid male sterility, F-box protein 19, F-box-type E3 ubiquitin ligase D1	F-BOX PROTEIN	SaF+, SaF-, SaFX	1	EU337975, EU337974. LOC_Os01g39670. PO:0020091; male gametophyte. Os_F0070 in Hua et al. 2011. KF893060-KF893148.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os01g0578500	LOC_Os01g39670.1	GR:0080064			GO:0009556 - microsporogenesis, GO:0016829 - lyase activity	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0020091 - obsolete microgametophyte 
8208	SAM	SaM	HYBRID STERILITY	Hybrid male sterility	SMALL UBIQUITIN-LIKE MODIFIER E3 LIGASE-LIKE PROTEIN	SaM+, SaM-, SaM+X, SaM-X	1	EU337977, EU337976. LOC_Os01g39680. small ubiquitin-like modifier E3 ligase-like protein. PO:0020091; male gametophyte. KF893149-KF893259. Os01g0578600 (in Ncbi and UniProt).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os01g0578700	LOC_Os01g39680.1, LOC_Os01g39680.2, LOC_Os01g39680.3	GR:0080063			GO:0019789 - SUMO ligase activity, GO:0009556 - microsporogenesis	TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	PO:0020091 - obsolete microgametophyte 
8209	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1	S-ADENOSYLMETHIONINE DECARBOXYLASE	S-adenosylmethionine decarboxylase, S-adenosylmethionine decarboxylase proenzyme, S-adenosylmethionine decarboxylase alpha chain, S-adenosylmethionine decarboxylase beta chain, S-adenosylmethionine decarboxylase 1	S-ADENOSYLMETHIONINE DECARBOXYLASE		4	LOC_Os04g42095. AF067194. AJ251899, Y07766. EC=4.1.1.50 A2XV58(indica), Q0JC10(japonica). C26568, AU108589. OsSAMDC1 in Chen et al. 2014.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm	Os04g0498600	LOC_Os04g42090.1, LOC_Os04g42090.2, LOC_Os04g42090.3, LOC_Os04g42090.4, LOC_Os04g42090.5, LOC_Os04g42095.1				GO:0009845 - seed germination, GO:0016209 - antioxidant activity, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0006597 - spermine biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0009846 - pollen germination, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0009555 - pollen development	TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000449 - grain yield per plant, TO:0006001 - salt tolerance, TO:0000430 - germination rate, TO:0000303 - cold tolerance, TO:0000421 - pollen fertility, TO:0000432 - temperature response trait	
8210	SRWD1	SRWD1, OsWD40-162, OsDWD57, DWD57	SALT RESPONSIVE WD40 PROTEIN 1	salt responsive WD40 protein 1, DWD motif- containing protein 57	SALT RESPONSIVE WD40 PROTEIN 1		8	AK112033, LOC_Os08g38880. CT830086.	 Tolerance and resistance - Stress tolerance	Os08g0497600	LOC_Os08g38880.1, LOC_Os08g38880.2, LOC_Os08g38880.3, LOC_Os08g38880.4, LOC_Os08g38880.5, LOC_Os08g38880.6				GO:0009651 - response to salt stress		
8211	SRWD2	SRWD2, OsWD40-52	SALT RESPONSIVE WD40 PROTEIN 2	salt responsive WD40 protein 2	SALT RESPONSIVE WD40 PROTEIN 2		2	AK111506, LOC_Os02g48964	 Tolerance and resistance - Stress tolerance	Os02g0721600	LOC_Os02g48964.1				GO:0009651 - response to salt stress		
8212	SRWD3	SRWD3, OsWD40-126, OsDWD54, DWD54	SALT RESPONSIVE WD40 PROTEIN 3	salt responsive WD40 protein 3, DWD motif- containing protein 54	SALT RESPONSIVE WD40 PROTEIN 3		6	AK100886, LOC_Os06g07540. EU837247, CT831118.	 Tolerance and resistance - Stress tolerance	Os06g0171900	LOC_Os06g07540.1, LOC_Os06g07540.2, LOC_Os06g07540.3				GO:0009651 - response to salt stress		
8213	SRWD4	SRWD4, OsWD40-160, OsDWD56, DWD56	SALT RESPONSIVE WD40 PROTEIN 4	salt responsive WD40 protein 4, DWD motif- containing protein 56	SALT RESPONSIVE WD40 PROTEIN 4		8	AK111715, LOC_Os08g31560	 Tolerance and resistance - Stress tolerance	Os08g0408200	LOC_Os08g31560.1				GO:0009651 - response to salt stress		
8214	SRWD5	OsSRWD5, OsWD40-73, OsDWD55, DWD55	SALT RESPONSIVE WD40 PROTEIN 5	salt responsive WD40 protein 5, DWD motif- containing protein 55	SALT RESPONSIVE WD40 PROTEIN 5		3	AK072984. EU718734.	 Tolerance and resistance - Stress tolerance	Os03g0386000	LOC_Os03g26870.1, LOC_Os03g26870.2				GO:0009651 - response to salt stress		
8215	SYMRK	OsSYMRK	SYMBIOSIS LEU-RICH REPEAT RECEPTOR KINASE	Symbiosis receptor kinase, SYMBIOSIS RECEPTOR-LIKE KINASE	SYMBIOSIS LEU-RICH REPEAT RECEPTOR KINASE	Ossymrk, Ossymrk-1, Ossymrk-2, Ossymrk-3	7	a rice ortholog of Medicago trunculata NORK/SYMRK. GO:0036377: arbuscular mycorrhizal association.	 Tolerance and resistance,  Biochemical character	Os07g0568100	LOC_Os07g38070.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0009610 - response to symbiotic fungus, GO:0044111 - development during symbiotic interaction, GO:0009877 - nodulation, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0052031 - modulation by symbiont of host defense response, GO:0010200 - response to chitin, GO:0009620 - response to fungus		
8216	PT1	OsPT1, PHT1-1, OsPht1;1, Pht1;1, OsPHT1;1, PHT1;1	PHOSPHATE TRANSPORTER 1	Inorganic phosphate transporter 1-1, phosphate transporter 1, Plant Phosphate Transporter 1.1	PHOSPHATE TRANSPORTER 1	ospt1, ospht1;1	3	AF536961. H(+)/Pi cotransporter. Q8H6H4. TO:0020102: phosphate content. GO:1904383: response to sodium phosphate. TO:0006054: arsenic content trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0150600	LOC_Os03g05620.1				GO:0006817 - phosphate transport, GO:0042594 - response to starvation, GO:0046685 - response to arsenic, GO:0046688 - response to copper ion, GO:0055085 - transmembrane transport, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0015293 - symporter activity	TO:0000102 - phosphorus sensitivity, TO:0000021 - copper sensitivity	PO:0020103 - flag leaf 
8217	PT2	OsPT2, PTH1-2, OsPht1;2, PHT1;2, OsPHT1;2	PHOSPHATE TRANSPORTER 2	High affinity phosphate transporter 2, Inorganic phosphate transporter 1-2, Plant Phosphate Transporter 1;2	PHOSPHATE TRANSPORTER 2	ospht1;2, pht1;2-1, pht1;2-2, pht1;2-3, pht1;2-5	3	AF536962. H(+)/Pi cotransporter, OsPT1. Q8GSD9. TO:0020102: phosphate content. TO:0006055: selenium concentration. TO:0020098: nitrate sensitivity. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0150800	LOC_Os03g05640.1				GO:0006817 - phosphate transport, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010269 - response to selenium ion, GO:0010167 - response to nitrate, GO:0009735 - response to cytokinin stimulus, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0009751 - response to salicylic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0009610 - response to symbiotic fungus, GO:0016021 - integral to membrane	TO:0000167 - cytokinin sensitivity, TO:0001024 - phosphorus content, TO:0000511 - phosphorus uptake, TO:0000163 - auxin sensitivity, TO:0000032 - selenium sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000102 - phosphorus sensitivity	PO:0009005 - root 
8218	PT3	OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3	PHOSPHATE TRANSPORTER 3	Probable inorganic phosphate transporter 1-3	PHOSPHATE TRANSPORTER 3	ospht1;3	10	AF536963. AF239619. H(+)/Pi cotransporter, PT1. Q7XDZ7. OjPT1 (from O. stiva L. ssp. Japonica Jingxi18) in Yu et al. 2001. TO:0020102: phosphate content. GO:1904383: response to sodium phosphate.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0444600	LOC_Os10g30770.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0042594 - response to starvation, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0016020 - membrane, GO:0006817 - phosphate transport, GO:0015293 - symporter activity	TO:0000102 - phosphorus sensitivity	PO:0005020 - vascular bundle , PO:0005417 - phloem 
8219	PT4	OsPT4, PHT1-4, OsPht1;4, PHT1-2, PHT1;4, OsPHT1;4	PHOSPHATE TRANSPORTER 4	Probable inorganic phosphate transporter 1-4, Plant Phosphate Transporter 1;4	PHOSPHATE TRANSPORTER 4	ospt4-1, ospt4-2	4	AF536964. H(+)/Pi cotransporter, PT1, OsPT1. Q01MW8(indica). Q8H6H2(japonica). TO:0020102: phosphate content. GO:1904383: response to sodium phosphate. TO:0006054: arsenic content trait.	 Seed - Physiological traits - Dormancy,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Embryo	Os04g0186400	LOC_Os04g10750.1, LOC_Os04g10750.2, LOC_Os04g10750.3, LOC_Os04g10750.4				GO:0046685 - response to arsenic, GO:0009790 - embryonic development, GO:0016036 - cellular response to phosphate starvation, GO:0009845 - seed germination, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0009739 - response to gibberellin stimulus, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0055085 - transmembrane transport, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0046688 - response to copper ion, GO:0009733 - response to auxin stimulus, GO:0006817 - phosphate transport	TO:0000615 - abscisic acid sensitivity, TO:0000021 - copper sensitivity, TO:0000163 - auxin sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0009009 - plant embryo , PO:0007057 - 0 seed germination stage , PO:0007631 - plant embryo stage , PO:0020103 - flag leaf 
8220	PT5	OsPT5, OsPht1;5, Pht1;5, PHT1-5	PHOSPHATE TRANSPORTER 5	Probable inorganic phosphate transporter 1-5	PHOSPHATE TRANSPORTER 5	ospt5	4	Q7X7V2. AF536965. H(+)/Pi cotransporter. TO:0020102: phosphate content. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0185600	LOC_Os04g10690.1				GO:0016036 - cellular response to phosphate starvation, GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0006817 - phosphate transport, GO:0005886 - plasma membrane	TO:0000102 - phosphorus sensitivity	
8221	PT6	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1	PHOSPHATE TRANSPORTER 6	Inorganic phosphate transporter 1-6	PHOSPHATE TRANSPORTER 6		8	AF536966. AF335588. H(+)/Pi cotransporter. Q8H6H0. a target gene of miR399. TO:0020098: nitrate sensitivity. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0564000	LOC_Os08g45000.1				GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0042594 - response to starvation, GO:0010167 - response to nitrate, GO:0006817 - phosphate transport, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0009751 - response to salicylic acid stimulus, GO:0009610 - response to symbiotic fungus, GO:0009735 - response to cytokinin stimulus	TO:0001024 - phosphorus content, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000102 - phosphorus sensitivity	PO:0005052 - plant callus 
8222	PT7	OsPT7, PHT1-7, OsPht1;7	PHOSPHATE TRANSPORTER 7	Probable inorganic phosphate transporter 1-7	PHOSPHATE TRANSPORTER 7		3	AF536967. H(+)/Pi cotransporter. Q8H6G9. 	 Biochemical character	Os03g0136400	LOC_Os03g04360.1				GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0006817 - phosphate transport, GO:0009737 - response to abscisic acid stimulus, GO:0015293 - symporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009739 - response to gibberellin stimulus, GO:0055085 - transmembrane transport, GO:0009733 - response to auxin stimulus, GO:0016020 - membrane	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	
8223	PT8	OsPT8, PHT1-8, OsPht1;8, Pht1;8, PHT1;8, OsPHT1;8	PHOSPHATE TRANSPORTER 8	Probable inorganic phosphate transporter 1-8, Plant Phosphate Transporter 1;8	PHOSPHATE TRANSPORTER 8		10	AF536968. H(+)/Pi cotransporter. Q8H6G8. TO:0020102: phosphate content. TO:0006054: arsenic concentration. arsenate uptake transporter. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus. GO:2000280: regulation of root development. TO:0000739: shoot axis morphology trait. TO:0020102: phosphate content. GO:1904383: response to sodium phosphate.  TO:0006054: arsenic content trait.	 Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os10g0444700	LOC_Os10g30790.1, LOC_Os10g30790.2				GO:0055085 - transmembrane transport, GO:0042594 - response to starvation, GO:0005886 - plasma membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0048831 - regulation of shoot development, GO:0015293 - symporter activity, GO:0046685 - response to arsenic, GO:0009737 - response to abscisic acid stimulus, GO:0005783 - endoplasmic reticulum, GO:0002237 - response to molecule of bacterial origin, GO:0002221 - pattern recognition receptor signaling pathway, GO:0016020 - membrane, GO:0006817 - phosphate transport, GO:0046688 - response to copper ion, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0016036 - cellular response to phosphate starvation, GO:0009733 - response to auxin stimulus, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0002238 - response to molecule of fungal origin	TO:0000043 - root anatomy and morphology trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000102 - phosphorus sensitivity, TO:0000021 - copper sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0025164 - root epidermal cell 
8224	PT9	OsPT9, PHT1-9, OsPht1;9	PHOSPHATE TRANSPORTER 9	Probable inorganic phosphate transporter 1-9	PHOSPHATE TRANSPORTER 9		6	AF536969. H(+)/Pi cotransporter. Q8H6G7.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0324800	LOC_Os06g21920.1				GO:0016020 - membrane, GO:0006817 - phosphate transport, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0016036 - cellular response to phosphate starvation, GO:0015293 - symporter activity, GO:0005739 - mitochondrion, GO:0005886 - plasma membrane		
8225	PT10	OsPT10, PHT1-10, OsPht1;10	PHOSPHATE TRANSPORTER 10	Probable inorganic phosphate transporter 1-10	PHOSPHATE TRANSPORTER 10		6	AF536970. H(+)/Pi cotransporter. Q69T94. OsPT9 in Pandey et al. 2017. TO:0020102: phosphate content. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0325200	LOC_Os06g21950.1				GO:0042594 - response to starvation, GO:0055085 - transmembrane transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0006817 - phosphate transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0000102 - phosphorus sensitivity	
8226	PT11	OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11	PHOSPHATE TRANSPORTER 11	Inorganic phosphate transporter 1-11, PHOSPHATE TRANSPORTER1;11	PHOSPHATE TRANSPORTER 11		1	H(+)/Pi cotransporter. Q94DB8. GO:1904383: response to sodium phosphate. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0657100	LOC_Os01g46860.1				GO:0009610 - response to symbiotic fungus, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0009739 - response to gibberellin stimulus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0055085 - transmembrane transport, GO:0007623 - circadian rhythm, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009642 - response to light intensity, GO:0006810 - transport, GO:0005215 - transporter activity, GO:0006817 - phosphate transport	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000102 - phosphorus sensitivity	PO:0007057 - 0 seed germination stage , PO:0009089 - endosperm , PO:0009029 - stamen , PO:0020104 - leaf sheath , PO:0020031 - radicle , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0000025 - root tip , PO:0009005 - root , PO:0009010 - seed 
8227	PT12	OsPT12, PHT1-12, OsPht1;12	PHOSPHATE TRANSPORTER 12	Probable inorganic phosphate transporter 1-12	PHOSPHATE TRANSPORTER 12		3	AF536972. H(+)/Pi cotransporter. Q8H074. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0150500	LOC_Os03g05610.1				GO:0055085 - transmembrane transport, GO:0006817 - phosphate transport, GO:0009739 - response to gibberellin stimulus, GO:0009845 - seed germination, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0042594 - response to starvation, GO:0015293 - symporter activity	TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000163 - auxin sensitivity	
8228	PT13	OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13	PHOSPHATE TRANSPORTER 13	Putative inorganic phosphate transporter 1-13, PHOSPHATE TRANSPORTER1;13	PHOSPHATE TRANSPORTER 13	pt13-1	4	AF536973. H(+)/Pi cotransporter. Q7XRH8. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Insect resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0186800	LOC_Os04g10800.1				GO:0009735 - response to cytokinin stimulus, GO:0015293 - symporter activity, GO:0006817 - phosphate transport, GO:0055085 - transmembrane transport, GO:0042594 - response to starvation, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0002213 - defense response to insect	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000424 - brown planthopper resistance	PO:0020103 - flag leaf 
8229	AOX1A	Ao1-1, AOX1a, OsAOX1a, AOX 1a	ALTERNATIVE OXIDASE 1A	alternative oxidase-1a, ubiquinol oxidase 1a	ALTERNATIVE OXIDASE 1A		4	D38902, AB004864, AB004813, AB007452. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0600200	LOC_Os04g51150.1	GR:0061073			GO:0016491 - oxidoreductase activity, GO:0007585 - respiratory gaseous exchange, GO:0009916 - alternative oxidase activity, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0022900 - electron transport chain, GO:0070469 - respiratory chain, GO:0005740 - mitochondrial envelope, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000432 - temperature response trait	PO:0000003 - whole plant 
8230	AOX1B	AOX1b, OsAOX1b	ALTERNATIVE OXIDASE 1B	alternative oxidase-1b	ALTERNATIVE OXIDASE 1B		4	D22433, AB004865, AB004813. a predicted target of osa-miR159a.2.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0600300	LOC_Os04g51160.1	GR:0061074			GO:0005740 - mitochondrial envelope, GO:0022900 - electron transport chain, GO:0007585 - respiratory gaseous exchange, GO:0046872 - metal ion binding, GO:0009916 - alternative oxidase activity, GO:0016491 - oxidoreductase activity, GO:0009408 - response to heat, GO:0070469 - respiratory chain, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000432 - temperature response trait, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0000003 - whole plant 
8231	AOX1C	OsAOX1c	ALTERNATIVE OXIDASE 1C	alternative oxidase-1c, Os-ubiquinol oxidase 1, ubiquinol oxidase 1, ubiquinol oxidase 1c	ALTERNATIVE OXIDASE 1C		2	AB074005. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0700400	LOC_Os02g47200.1	GR:0061075			GO:0007585 - respiratory gaseous exchange, GO:0046872 - metal ion binding, GO:0022900 - electron transport chain, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0005740 - mitochondrial envelope, GO:0009916 - alternative oxidase activity, GO:0070469 - respiratory chain, GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8232	DCW11	DCW11, OsPP2C13, PP2C13, OsPP22	DOWN-REGULATED GENE 11	Probable protein phosphatase 2C 13, protein phosphatase 2C 13, protein phosphatase 2C13, protein phosphatase 22	MITOCHONDRIAL PROTEIN PHOSPHATASE 2C		2	LOC_Os02g15594. AK069289. EC=3.1.3.16 Q6EN45.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0255100	LOC_Os02g15594.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0000287 - magnesium ion binding, GO:0008287 - protein serine/threonine phosphatase complex, GO:0030145 - manganese ion binding		
8233	GER5	OsGLP1, GLP1, GER1, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14, OsCDP8.14, CDP8.14	GERMIN-LIKE PROTEIN 5	Germin-like protein 8-14, Germin-like protein 5, Germin-like protein 1, Germin protein type 1, germin-like protein1, cupin domain protein 8.14	GERMIN-LIKE PROTEIN 5	glp1, glp1-3, glp1-4, glp1-8	8	AB010876, AB015593. AF032975. Q6ZBZ2. OsGLP8-14 in Li et al. 2016, Das et al. 2019. GO:0071704: organic substance metabolic process. GO:1900384: regulation of flavonol biosynthetic process.	 Vegetative organ - Leaf,  Seed - Physiological traits - Storage substances,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os08g0460000	LOC_Os08g35760.1				GO:0010224 - response to UV-B, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0010109 - regulation of photosynthesis, GO:0048046 - apoplast, GO:0005829 - cytosol, GO:0010941 - regulation of cell death, GO:0009812 - flavonoid metabolic process, GO:0051553 - flavone biosynthetic process, GO:0010229 - inflorescence development, GO:0051555 - flavonol biosynthetic process, GO:0009409 - response to cold, GO:0045735 - nutrient reservoir activity, GO:0030145 - manganese ion binding	TO:0000303 - cold tolerance, TO:0000601 - UV-B light sensitivity, TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0000063 - mimic response, TO:0000206 - leaf angle, TO:0000227 - root length, TO:0001027 - net photosynthetic rate, TO:0000605 - hydrogen peroxide content	PO:0020104 - leaf sheath , PO:0001083 - inflorescence development stage 
8234	GLP12-1	OsGLP12-1, OsCDP12.1, CDP12.1	GERMIN-LIKE PROTEIN 12-1	Germin-like protein 12-1, cupin domain protein 12.1	GERMIN-LIKE PROTEIN 12-1		12	Q2QXJ4.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os12g0154700	LOC_Os12g05840.1				GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity, GO:0050832 - defense response to fungus, GO:0030145 - manganese ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000074 - blast disease	
8235	GLP12-2	OsGLP12-2, OsCDP12.2, CDP12.2	GERMIN-LIKE PROTEIN 12-2	Germin-like protein 12-2, cupin domain protein 12.2	GERMIN-LIKE PROTEIN 12-2		12	Q2QXJ2. cupin domain containing protein.	 Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Storage substances	Os12g0154800	LOC_Os12g05860.1				GO:0030145 - manganese ion binding, GO:0050832 - defense response to fungus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast	TO:0000477 - panicle blast disease resistance	
8236	GLP12-3	OsGLP12-3, OsCDP12.3, CDP12.3	GERMIN-LIKE PROTEIN 12-3	cupin domain protein 12.3	GERMIN-LIKE PROTEIN 12-3		12	MK946667 (indica, promoter region). GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os12g0154900	LOC_Os12g05870.1				GO:0009269 - response to desiccation, GO:0006970 - response to osmotic stress, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity, GO:0046686 - response to cadmium ion, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0030145 - manganese ion binding	TO:0000114 - flooding related trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity	
8237	GLP8-11	OsGLP8-11, RGLP1, OsRGLP1, OsCDP8.11, CDP8.11	GERMIN-LIKE PROTEIN 8-11	Germin-like protein 8-11, cupin domain protein 8.11	GERMIN-LIKE PROTEIN 8-11	glp8-11	8	Q6YZY5. RGLP1 in Ma et al. 2013. GO:1990170: stress response to cadmium ion. GO:1990169: stress response to copper ion.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os08g0190100	LOC_Os08g09080.2, LOC_Os08g09080.1				GO:0002242 - defense response to parasitic plant, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009723 - response to ethylene stimulus, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0030912 - response to deep water, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0005618 - cell wall	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000173 - ethylene sensitivity, TO:0000021 - copper sensitivity, TO:0000286 - submergence sensitivity, TO:0000444 - parasitic weed	PO:0009010 - seed 
8238	GLP8-12	OsGLP8-12, OsCDP8.12, CDP8.12	GERMIN-LIKE PROTEIN 8-12	Germin-like protein 8-12, cupin domain protein 8.12	GERMIN-LIKE PROTEIN 8-12		8	Q6ZCR3.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0231400	LOC_Os08g13440.3, LOC_Os08g13440.2, LOC_Os08g13440.1				GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0045735 - nutrient reservoir activity, GO:0009723 - response to ethylene stimulus, GO:0030145 - manganese ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
8239	GER3	OsGLP8-2, GLP8-2, OsGER3, GLP16, OsEnS-117, OsCDP8.2, CDP8.2	GERMIN-LIKE PROTEIN 3	Germin-like protein 8-2, Germin-like protein 3, Germin-like protein 16, endosperm-specific gene 117, cupin domain protein 8.2	GERMIN-LIKE PROTEIN 3	glp8-2	8	Q6YZA9. EF444528. AF032973. GO:1990170: stress response to cadmium ion. GO:1990169: stress response to copper ion. TO:0006059: cadmium content trait. TO:0006052: copper concentration.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Seed	Os08g0189100	LOC_Os08g08960.1				GO:0045735 - nutrient reservoir activity, GO:0048316 - seed development, GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0046686 - response to cadmium ion, GO:0006979 - response to oxidative stress, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0046688 - response to copper ion	TO:0000731 - lignin content, TO:0001034 - relative plant height, TO:0000143 - relative biomass, TO:0000605 - hydrogen peroxide content, TO:0001016 - relative chlorophyll content, TO:0002657 - oxidative stress, TO:0000516 - relative root length, TO:0000653 - seed development trait, TO:0000021 - copper sensitivity	PO:0009010 - seed , PO:0001170 - seed development stage 
8240	GLP8-5	OsGLP8-5, OsCDP8.5, CDP8.5	GERMIN-LIKE PROTEIN 8-5	Germin-like protein 8-5, cupin domain protein 8.5	GERMIN-LIKE PROTEIN 8-5	glp8-5	8	Q6YZA6. GO:1990170: stress response to cadmium ion. GO:1990169: stress response to copper ion. 	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189400	LOC_Os08g08990.1				GO:0045735 - nutrient reservoir activity, GO:0046688 - response to copper ion, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0048046 - apoplast, GO:0046686 - response to cadmium ion, GO:0030145 - manganese ion binding	TO:0000021 - copper sensitivity	
8241	GLP8-6	OsGLP8-6, OsCDP8.6, CDP8.6	GERMIN-LIKE PROTEIN 8-6	Germin-like protein 8-6, cupin domain protein 8.6	GERMIN-LIKE PROTEIN 8-6	glp8-6	8	Q6YZA4. GO:1990169: stress response to copper ion.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189500	LOC_Os08g09000.1				GO:0046688 - response to copper ion, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030145 - manganese ion binding	TO:0000021 - copper sensitivity	
8242	GER6	OsGLP8-7, GLP8-7, OsGER6, OsRGLP2, RGLP2, OsCDP8.7, CDP8.7	GERMIN-LIKE PROTEIN 6	Germin-like protein 8-7, Germin-like protein 6, germin-like protein gene 2, Root GLP 2, root GLP2, root Germin-like protein 2, cupin domain protein 8.7	GERMIN-LIKE PROTEIN 6	glp8-7	8	AF032976. Q6YZZ2. DQ414400 (promoter sequence). GO:0071588: hydrogen peroxide mediated signaling pathway. GO:1990170: stress response to cadmium ion. GO:1990169: stress response to copper ion. 	 Tolerance and resistance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0189600	LOC_Os08g09010.1				GO:0002242 - defense response to parasitic plant, GO:0048046 - apoplast, GO:0009409 - response to cold, GO:0034059 - response to anoxia, GO:0030145 - manganese ion binding, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0050832 - defense response to fungus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0046688 - response to copper ion, GO:0009414 - response to water deprivation, GO:0002213 - defense response to insect, GO:0045735 - nutrient reservoir activity, GO:0005618 - cell wall, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0046686 - response to cadmium ion	TO:0000401 - plant growth hormone sensitivity, TO:0000015 - oxygen sensitivity, TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait, TO:0000315 - bacterial disease resistance, TO:0000112 - disease resistance, TO:0000021 - copper sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000444 - parasitic weed, TO:0000303 - cold tolerance, TO:0000249 - leaf senescence, TO:0000188 - drought sensitivity, TO:0000439 - fungal disease resistance, TO:0000167 - cytokinin sensitivity, TO:0000075 - light sensitivity	PO:0009010 - seed 
8243	GLP8-8	OsGLP8-8, OsCDP8.8, CDP8.8	GERMIN-LIKE PROTEIN 8-8	Germin-like protein 8-8, cupin domain protein 8.8	GERMIN-LIKE PROTEIN 8-8		8	Q6YZA1.	 Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Storage substances	Os08g0189700	LOC_Os08g09020.1				GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle		
8244	GLP8-9	OsGLP8-9, OsCDP8.9, CDP8.9	GERMIN-LIKE PROTEIN 8-9	Germin-like protein 8-9, cupin domain protein 8.9	GERMIN-LIKE PROTEIN 8-9	glp8-9	8	Q6YZ99. GO:1990169: stress response to copper ion.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0189850	LOC_Os08g09040.1				GO:0030145 - manganese ion binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0046688 - response to copper ion, GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity	TO:0000021 - copper sensitivity	
8245	RF2A	RF2a, OsbZIP75	bZIP TRANSCRIPTION FACTOR RF2A	Transcription factor RF2a, bZIP transcription factor 75	bZIP TRANSCRIPTION FACTOR RF2A		9	AF005492. Q69IL4.	 Other	Os09g0516200	LOC_Os09g34060.1				GO:0003700 - transcription factor activity, GO:0046983 - protein dimerization activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding		
8246	RF2B	RF2b, OsbZIP30	bZIP TRANSCRIPTION FACTOR RF2B	Transcription factor RF2b, bZIP transcription factor 30	bZIP TRANSCRIPTION FACTOR RF2B		3	AY466471. Q6S4P4.	 Other	Os03g0336200	LOC_Os03g21800.1, LOC_Os03g21800.2				GO:0046983 - protein dimerization activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
8247	RF7	RF7	RESTORATION OF FERTILITY ７				12		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration						GO:0007275 - multicellular organismal development		
8248	RL10	rl10	ROLLED LEAF 10				9		 Vegetative organ - Leaf						GO:0030154 - cell differentiation		
8249	RL7	rl7	ROLLED LEAF 7				5		 Vegetative organ - Leaf						GO:0030154 - cell differentiation		
8250	RL8	rl8	ROLLED LEAF 8				5		 Vegetative organ - Leaf						GO:0030154 - cell differentiation		
8251	RL9	rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, KANADI1, AH2, OsAH2, CL1, OsCL1	ROLLED LEAF 9	SHALLOT-LIKE1, SHALLOT-LIKE 1, ROLLED LEAF9, anther dehiscence defected 1, abnormal hull 2, curling leaf 1	GARP PROTEIN	rl9-1, rl9-2, sll1, sll1/rl9, sll1-1, sll1-2, Osadd1, ah2, cl1	9	FJ268748, FJ268747. Q0J235. a MYB transcription factor of the KANADI family. a SHAQKYF class MYB family transcription factor. TO:0000869: glume anatomy and morphology trait. GO:0120194: regulation of anther dehiscence. PO:0030123: panicle inflorescence. GO:0090558: plant epidermis development. TO:0001069: cooking quality trait. GO:0090628: plant epidermal cell fate specification. TO:0000975: grain width.	 Other,  Vegetative organ - Root,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Character as QTL - Grain quality,  Seed - Morphological traits - Grain shape,  Reproductive organ - Inflorescence	Os09g0395300	LOC_Os09g23200.1				GO:0042127 - regulation of cell proliferation, GO:0010229 - inflorescence development, GO:0012501 - programmed cell death, GO:0048316 - seed development, GO:0009957 - epidermal cell fate specification, GO:0001558 - regulation of cell growth, GO:0048437 - floral organ development, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010158 - abaxial cell fate specification, GO:0010088 - phloem development, GO:0009555 - pollen development, GO:0048366 - leaf development, GO:0048364 - root development, GO:0048653 - anther development	TO:0000085 - leaf rolling, TO:0000196 - amylose content, TO:0000397 - grain size, TO:0000598 - protein content, TO:0006022 - floral organ development trait, TO:0000587 - endosperm quality, TO:0000734 - grain length, TO:0002681 - leaf curling, TO:0000382 - 1000-seed weight, TO:0000211 - gel consistency, TO:0000462 - gelatinization temperature, TO:0000396 - grain yield, TO:0000326 - leaf color, TO:0000421 - pollen fertility, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0002757 - flag leaf length, TO:0000295 - chlorophyll-b content, TO:0001027 - net photosynthetic rate, TO:0000495 - chlorophyll content, TO:0000152 - panicle number, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000449 - grain yield per plant, TO:0000162 - seed quality, TO:0000316 - photosynthetic ability, TO:0000653 - seed development trait, TO:0000656 - root development trait, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000391 - seed size, TO:0000053 - pollen sterility, TO:0000474 - glume opening, TO:0001006 - adventitious root number, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000655 - leaf development trait	PO:0009051 - spikelet , PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0009047 - stem , PO:0001007 - pollen development stage , PO:0025426 - phloem development stage , PO:0001050 - leaf development stage , PO:0006019 - leaf abaxial epidermis , PO:0020104 - leaf sheath , PO:0000293 - guard cell , PO:0001004 - anther development stage , PO:0009005 - root , PO:0007520 - root development stage , PO:0025585 - floral organ formation stage 
8252	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2	sativa ADP-glucose pyrophosphorylase large subunit 2, ADP-glucose Pyrophosphorylase large subunit 2, AGPase large subunit 2, AGPase large unit 2, ADP-glucose pyrophosphorylase subunit SH2, GRAIN INCOMPLETE FILLING 2	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2	osagpl2, osagpl2-3, osagpl2-1, gif2	1	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AP004317. PO:0009089; endosperm. U66041. AY028314. U87450. HQ679247-HQ679415 (O. sativa and other wild rice species). U70541 (AAB58473).  a homolog of maize sh2 gene. GO:2000034: regulation of seed maturation. 	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm	Os01g0633100	LOC_Os01g44220.3, LOC_Os01g44220.4, LOC_Os01g44220.7, LOC_Os01g44220.6, LOC_Os01g44220.5, LOC_Os01g44220.1, LOC_Os01g44220.2	GR:0101320			GO:0010431 - seed maturation, GO:0005829 - cytosol, GO:0009536 - plastid, GO:0010581 - regulation of starch biosynthetic process, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0009269 - response to desiccation, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0009058 - biosynthetic process, GO:0010035 - response to inorganic substance, GO:0019252 - starch biosynthetic process, GO:0016779 - nucleotidyltransferase activity, GO:0005978 - glycogen biosynthetic process	TO:0000396 - grain yield, TO:0000394 - drought related trait, TO:0000104 - floury endosperm, TO:0002661 - seed maturation, TO:0000696 - starch content, TO:0000480 - nutrient sensitivity, TO:0000162 - seed quality, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000382 - 1000-seed weight, TO:0000100 - shrunken endosperm, TO:0000590 - grain weight	PO:0001170 - seed development stage , PO:0009001 - fruit , PO:0009010 - seed , PO:0007022 - seed imbibition stage , PO:0007632 - seed maturation stage , PO:0009089 - endosperm 
8253	AGPL3	OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1, AGPL1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3	sativa ADP-glucose pyrophosphorylase large subunit 3, ADP-glucose Pyrophosphorylase large subunit 3, AGPase large subunit 3, AGPase large unit 1, AGPase L1	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3		5	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AC007858, AP120988. D50317. BGIOSGA017490. OsAGPL1 in Lee et al. 2007, Lu et al. 2012, Yang et al. 2015, Morita et al. 2015, Long et al. 2018, Zhu et al. 2018, Lee et al. 2019, Baysal et al. 2020, Fukayama et ak. 2021, Liao et al. 2022, Liu et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0580000	LOC_Os05g50380.2, LOC_Os05g50380.1	GR:0101321			GO:0019252 - starch biosynthetic process, GO:0009058 - biosynthetic process, GO:0009413 - response to flooding, GO:0009536 - plastid, GO:0016779 - nucleotidyltransferase activity, GO:0008878 - glucose-1-phosphate adenylyltransferase activity	TO:0000286 - submergence sensitivity	PO:0009047 - stem , PO:0009089 - endosperm , PO:0005020 - vascular bundle , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0004006 - mesophyll cell , PO:0009066 - anther , PO:0000074 - parenchyma cell 
8254	AGPL4	OsAGPL4, APL4, OsAPL4, OsSTA193	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4	sativa ADP-glucose pyrophosphorylase large subunit 4, ADP-glucose Pyrophosphorylase large subunit 4, AGPase large subunit 4, AGPase large unit 4	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4	osagpl4-1, osagpl4-2, osagpl4-3	7	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AP003574, AP004382. PO:0009089; endosperm. LOC_Os07g13980. a mature anther-preferentially expressed gene.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Physiological traits - Storage substances	Os07g0243200	LOC_Os07g13980.1	GR:0101322			GO:0009058 - biosynthetic process, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0016779 - nucleotidyltransferase activity, GO:0019252 - starch biosynthetic process, GO:0009536 - plastid	TO:0000106 - male sterility type, TO:0000696 - starch content	PO:0009066 - anther , PO:0009089 - endosperm 
8255	AGPS1	OsAGPS1, APS1, OsAPS1, AGPsma	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1	sativa ADP-glucose pyrophosphorylase small subunit 1, ADP-glucose Pyrophosphorylase small subunit 1, AGPase small subunit 1, Adenosine diphosphate glucose pyrophosphorylase, adenosine diphosphoglucose pyrophosphorylase, ADP-glucose pyrophosphorylase small unit 1, AGPase S1	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1		9	AP004011, AP004756. AY028315. GRO:0007141; C-embryo stage ; GRO:0007137; embryo development. a novel candidate gene for fine-mapped qACE9.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Taste,  Biochemical character	Os09g0298200	LOC_Os09g12660.1, LOC_Os09g12660.2	GR:0101317			GO:0009536 - plastid, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0016779 - nucleotidyltransferase activity, GO:0009058 - biosynthetic process, GO:0009408 - response to heat, GO:0009413 - response to flooding, GO:0019252 - starch biosynthetic process, GO:0009501 - amyloplast	TO:0000266 - chalky endosperm, TO:0000286 - submergence sensitivity, TO:0000259 - heat tolerance	PO:0025034 - leaf , PO:0009089 - endosperm , PO:0020104 - leaf sheath , PO:0007632 - seed maturation stage , PO:0009047 - stem , PO:0009066 - anther , PO:0004006 - mesophyll cell 
8257	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2	"sativa ADP-glucose pyrophosphorylase small subunit 2a, sativa ADP-glucose pyrophosphorylase small subunit 2, ADP-glucose Pyrophosphorylase small subunit 2, AGPase small subunit 2, ADP-glucose
pyrophosphorylase small subunit 2a, ADP-glucose pyrophosphorylase 51kD subunit, ADP-glucose pyrophosphorylase small unit 2, ADP-glucose pyrophosphorylase small subunit 2b"	ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2	AGPS2-2, osagps2, osagps2-1	8	"OsAGPS2a: leaf-preferential transcript, OsAGPS2b: seed-specific transcript. \"Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic\", Alpha-D-glucose-1-phosphate adenyl transferase, ADP-glucose pyrophosphorylase, AGPase B, ADP-glucose synthase, Adenosine diphosphate glucose pyrophosphorylase, adenosine diphosphoglucose pyrophosphorylase, AGPS, AGPASE B, \"Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor\". EC=2.7.7.27 P15280. AB550912(AGPS2-2, Milayng23). J04960. M31616. AY427566 (promoter). HQ678741-HQ678909 (O. sativa and other wild rice species). a considerable candidate gene responsible for phenotype of sugary mutant. GO:1901698: response to nitrogen compound."	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm	Os08g0345800	LOC_Os08g25734.2, LOC_Os08g25734.1	GR:0101318			GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0009269 - response to desiccation, GO:0005982 - starch metabolic process, GO:0005978 - glycogen biosynthetic process, GO:0010035 - response to inorganic substance, GO:0009501 - amyloplast, GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0009791 - post-embryonic development, GO:0009415 - response to water, GO:0009651 - response to salt stress, GO:0000003 - reproduction, GO:0009536 - plastid	TO:0000382 - 1000-seed weight, TO:0000333 - sugar content, TO:0006001 - salt tolerance, TO:0000100 - shrunken endosperm, TO:0000011 - nitrogen sensitivity, TO:0000394 - drought related trait, TO:0000696 - starch content, TO:0000259 - heat tolerance, TO:0002661 - seed maturation, TO:0000237 - water stress trait, TO:0000480 - nutrient sensitivity	PO:0007632 - seed maturation stage , PO:0009010 - seed , PO:0007022 - seed imbibition stage , PO:0009089 - endosperm 
8259	ABI5	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1	ABA INSENSITIVE 5	ABA Insensitive 5, bZIP-type transcription factor ABI5, bZIP transcription factors OsABI5, bZIP transcription factor 10, Abscisic acid insensitive 5	BZIP-TYPE TRANSCRIPTION FACTOR ABI5	abi5, abi5-1, abi5-2, Osabi5, osabi5-1, osabi5-2	1	EF199630, EF199631. BGIOSGA004837 (indica). PO:0020091; male gametophyte ; PO:0009049; inflorescence. GRO:0007047; 02-seedling. AU063505, AU093081. GO:1903285: positive regulation of hydrogen peroxide catabolic process. GO:1901698: response to nitrogen compound. GO:0141067: intracellular nitrogen homeostasis. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903314: regulation of nitrogen cycle metabolic process. GO:1902040: positive regulation of seed dormancy process.	 Character as QTL - Germination,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os01g0859300	LOC_Os01g64000.1, LOC_Os01g64000.2, LOC_Os01g64000.3				GO:0009414 - response to water deprivation, GO:0042744 - hydrogen peroxide catabolic process, GO:0045449 - regulation of transcription, GO:0010162 - seed dormancy, GO:0043565 - sequence-specific DNA binding, GO:0009738 - abscisic acid mediated signaling, GO:0003700 - transcription factor activity, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0009725 - response to hormone stimulus, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0009409 - response to cold, GO:0010029 - regulation of seed germination, GO:0019740 - nitrogen utilization, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0030187 - melatonin biosynthetic process, GO:0031667 - response to nutrient levels, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0010152 - pollen maturation, GO:0009651 - response to salt stress, GO:0010187 - negative regulation of seed germination, GO:0046345 - abscisic acid catabolic process, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000483 - germinability at low temperature, TO:0000011 - nitrogen sensitivity, TO:0000429 - salt sensitivity, TO:0000430 - germination rate, TO:0000253 - seed dormancy, TO:0000053 - pollen sterility, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000250 - vigor related trait, TO:0000420 - fertility related trait, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content	PO:0020091 - obsolete microgametophyte , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
8260	AGO11	OsAGO11	ARGONAUTE 11	Protein argonaute 11	PROTEIN ARGONAUTE 11		3	Q10F39.	 Other	Os03g0682600	LOC_Os03g47830.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8261	AGO12	OsAGO12	ARGONAUTE 12	Protein argonaute 12	PROTEIN ARGONAUTE 12		3	Q7Y001.	 Other	Os03g0682200	LOC_Os03g47820.1				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding		
8262	AGO13	OsAGO13	ARGONAUTE 13	Protein argonaute 13	PROTEIN ARGONAUTE 13		3	Q852N2.	 Other	Os03g0789500	LOC_Os03g57560.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8263	AGO14	OsAGO14	ARGONAUTE 14	Protein argonaute 14	PROTEIN ARGONAUTE 14		7	Q6Z4F1.	 Other	Os07g0188000	LOC_Os07g09020.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8264	AGO15	OsAGO15	ARGONAUTE 15	Protein argonaute 15	PROTEIN ARGONAUTE 15		1	Q5NBN9.	 Other	Os01g0275200	LOC_Os01g16850.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8265	AGO16	OsAGO16, OsAGO6, ZP1	ARGONAUTE 16	Protein argonaute 16, Protein ZWILLE/PINHEAD-like 1	PROTEIN ARGONAUTE 16		7	Q6YSJ5.	 Other	Os07g0265600	LOC_Os07g16224.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA		
8266	AGO17	OsAGO17	ARGONAUTE 17	Protein argonaute 17	PROTEIN ARGONAUTE 17	ago17, ago17-1, ago17-2	2	Q6H6C3. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Other,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits	Os02g0169400	LOC_Os02g07310.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0005739 - mitochondrion, GO:0051512 - positive regulation of unidimensional cell growth, GO:0031047 - gene silencing by RNA	TO:0000266 - chalky endosperm, TO:0000455 - seed set percent, TO:0000576 - stem length, TO:0000051 - stem strength, TO:0000592 - 1000-dehulled grain weight, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000145 - internode length, TO:0000456 - spikelet number, TO:0000339 - stem thickness, TO:0000657 - spikelet anatomy and morphology trait, TO:0000391 - seed size, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000449 - grain yield per plant	PO:0020141 - stem node 
8267	AGO18	OsAGO18	ARGONAUTE 18	Protein argonaute 18, Argonaute18	PROTEIN ARGONAUTE 18	ago18	7	Q69UP6. GSE107903 (Oryza sativa Argonaute 18 is a regulator of male sterility (RNA-Seq)). a target of OsMIR168a.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance,  Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0471300	LOC_Os07g28850.1				GO:0051607 - defense response to virus, GO:0009555 - pollen development, GO:0003676 - nucleic acid binding, GO:0048229 - gametophyte development, GO:0007126 - meiosis, GO:0048232 - male gamete generation, GO:0031047 - gene silencing by RNA, GO:0005739 - mitochondrion	TO:0000437 - male sterility, TO:0000148 - viral disease resistance	PO:0009066 - anther 
8268	AGO1A	OsAGO1a, AGO1a, AGO10, AGO1-1	ARGONAUTE 1A	Protein argonaute 1A, Argonaute 10	PROTEIN ARGONAUTE 1A	ago10	2	Q6EU14. AGO10 in Ma et al. 2017. GO:1902185: positive regulation of shoot apical meristem development. AGO1-1 in Li et al. 2017. a target gene of miR168.	 Vegetative organ - Shoot apical meristem(SAM),  Other	Os02g0672200	LOC_Os02g45070.2, LOC_Os02g45070.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA	TO:0006020 - shoot apical meristem development	
8269	AGO1B	OsAGO1b, AGO1b, AGO1-2	ARGONAUTE 1B	Protein argonaute 1B	PROTEIN ARGONAUTE 1B		4	Q7XSA2. AGO1-2 in Li et al. 2017. TO:0006064: rolled leaf. TO:1000022: anther morphology trait. osa-miR168 target gene.	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os04g0566500	LOC_Os04g47870.2, LOC_Os04g47870.1				GO:0048366 - leaf development, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0005737 - cytoplasm, GO:0031047 - gene silencing by RNA	TO:0000421 - pollen fertility, TO:0000655 - leaf development trait, TO:0000346 - tiller number, TO:0000455 - seed set percent, TO:0000207 - plant height	PO:0025034 - leaf , PO:0001050 - leaf development stage , PO:0000002 - anther wall 
8270	AGO1C	OsAGO1c, OsAGO1, AGO1, AGO1c	ARGONAUTE 1C	Protein argonaute 1C, Protein argonaute 1, argonaute1	PROTEIN ARGONAUTE 1C		2	AB081951. Q6K972. targeted by miR168 (Qin et al. 2017). osa-miR168a target gene.	 Other,  Seed - Physiological traits	Os02g0831600	LOC_Os02g58490.1				GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA	TO:0000345 - seed viability	
8271	AGO1D	OsAGO1d, AGO1d	ARGONAUTE 1D	Protein argonaute 1D	PROTEIN ARGONAUTE 1D	osago1d- 1, osago1d-2, osago1d-3	6	Q5Z5B2. an OsMIR168a's target gene.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os06g0729300	LOC_Os06g51310.1, LOC_Os06g51310.2				GO:0005739 - mitochondrion, GO:0009409 - response to cold, GO:0048653 - anther development, GO:0031047 - gene silencing by RNA, GO:0043067 - regulation of programmed cell death, GO:0003723 - RNA binding, GO:0003676 - nucleic acid binding	TO:0002609 - stamen length, TO:0000214 - anther shape, TO:0000303 - cold tolerance, TO:0000067 - genic male sterility-thermo sensitive, TO:0000421 - pollen fertility, TO:0002601 - stamen size, TO:0000437 - male sterility, TO:0000215 - stamen anatomy and morphology trait	PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0000002 - anther wall , PO:0001004 - anther development stage , PO:0009066 - anther 
8272	AGO2	OsAGO2	ARGONAUTE 2	sativa Argonaute 2, Protein argonaute 2, ARGONAUTE2	PROTEIN ARGONAUTE 2	ago2, Osago2	4	Q7XTS4. The RNA-seq and ChIP-seq data (BioProject PRJCA001920) can be found in the Beijing Institute of Genomics Data Center (http://bigd.big.ac.cn) under accession numbers CRA002105, CRA002106, CRA002107, and CRA002109. GO:1903428: positive regulation of reactive oxygen species biosynthetic process. GO:1905643: positive regulation of DNA methylation.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Other,  Tolerance and resistance - Disease resistance	Os04g0615700	LOC_Os04g52540.1				GO:0009690 - cytokinin metabolic process, GO:0009651 - response to salt stress, GO:0046466 - membrane lipid catabolic process, GO:0006306 - DNA methylation, GO:0050687 - negative regulation of defense response to virus, GO:0003676 - nucleic acid binding, GO:0031047 - gene silencing by RNA, GO:0009409 - response to cold, GO:0051607 - defense response to virus, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development	TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0002660 - cytokinin content, TO:0000020 - black streak dwarf virus resistance, TO:0000734 - grain length	
8273	AGO3	OsAGO3	ARGONAUTE 3	Protein argonaute 3	PROTEIN ARGONAUTE 3	ago3	4	Q7XTS3.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0615800	LOC_Os04g52550.1				GO:0003676 - nucleic acid binding, GO:0009651 - response to salt stress, GO:0031047 - gene silencing by RNA	TO:0006001 - salt tolerance	
8274	AGO4A	OsAGO4a, AGO4-2	ARGONAUTE 4A	Protein argonaute 4A	PROTEIN ARGONAUTE 4A		1	Q9SDG8. AGO4-2 in Li et al. 2017.	 Other	Os01g0275600	LOC_Os01g16870.1, LOC_Os01g16870.2, LOC_Os01g16870.3, LOC_Os01g16870.4				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding	TO:0002676 - brassinosteroid content, TO:0002675 - gibberellic acid content	PO:0008016 - vegetative shoot apical meristem 
8275	AGO4B	OsAGO4b, AGO4-1	ARGONAUTE 4B	Protein argonaute 4B	PROTEIN ARGONAUTE 4B		4	Q0JF58. AGO4-1 in Li et al. 2017.	 Other	Os04g0151800	LOC_Os04g06770.1, LOC_Os04g06770.2				GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0044030 - regulation of DNA methylation	TO:0002675 - gibberellic acid content, TO:0002676 - brassinosteroid content	PO:0008028 - reproductive shoot apical meristem , PO:0008016 - vegetative shoot apical meristem 
8277	AGPL1	OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3, OsAGPSL3, AGPSL3	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1	sativa ADP-glucose pyrophosphorylase large subunit 1, ADP-glucose Pyrophosphorylase large subunit 1, AGPase large subunit 1, ADP-glucose pyrophosphorylase large subunit 3, AGPase large unit 3	ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1		3	EC=2.7.7.27 Adenosine diphosphate glucose pyrophosphorylase. AC096689, AP004382. Q6AVT2. OsAGPL3 in Lee et al. 2007, Lu et al. 2012 and Wang et al. 2013, Baysal et al. 2020,  Liu et al. 2021, Liao et al. 2022, Jin et al. 2021. OsAGPSL3 in Niu et al. 2021.	 Seed - Physiological traits - Storage substances,  Biochemical character,  Seed - Morphological traits - Endosperm	Os03g0735000	LOC_Os03g52460.1	GR:0101319			GO:0008878 - glucose-1-phosphate adenylyltransferase activity, GO:0005978 - glycogen biosynthetic process, GO:0019252 - starch biosynthetic process, GO:0016779 - nucleotidyltransferase activity, GO:0009058 - biosynthetic process, GO:0009536 - plastid		PO:0025034 - leaf 
8278	ALDH7	OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6, OsAnt1, Ant1	ALDEHYDE DEHYDROGENASE 7	Oryza sativa Aldehyde Dehydrogenase 7, Family 7 ALDH, lactic acid dehydrogenase, Aldehyde Dehydrogenase 7B6, antiquitin 1	ALDEHYDE DEHYDROGENASE 7		9	AF323586. lactic acid dehydrogenase (LDH) in Zhang et al. 2013. OsALDH7B6 in Simeon et al. 2010. Antiquitin. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0440300	LOC_Os09g26880.4, LOC_Os09g26880.3, LOC_Os09g26880.1				GO:0009635 - response to herbicide, GO:0050832 - defense response to fungus, GO:0009629 - response to gravity, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0009611 - response to wounding, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat	TO:0002693 - gravity response trait, TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000058 - herbicide sensitivity	PO:0006036 - root epidermis 
8279	ALYL1	OsALYL1	ALWAYS EARLYLIKE 1	ALWAYS EARLYLIKE1			1	R2R3-MYB.	 Other	Os01g0193900	LOC_Os01g09760.1				GO:0003677 - DNA binding		
8280	ANS	ANS, OsANS1, ANS1, LDOX, LDOX1, OsLDOX, OsLDOX1	ANTHOCYANIDIN SYNTHASE	anthocyanidin synthase, leucoanthocyanidin dioxygenase	ANTHOCYANIDIN SYNTHASE		1	Y07955. TO:0001109: grain color trait.	 Seed,  Coloration - Anthocyanin,  Coloration - Others,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0372500	LOC_Os01g27490.1				GO:0007033 - vacuole organization, GO:0005506 - iron ion binding, GO:0009813 - flavonoid biosynthetic process, GO:0009416 - response to light stimulus, GO:0009408 - response to heat, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0050589 - leucocyanidin oxygenase activity, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0010023 - proanthocyanidin biosynthetic process, GO:0009718 - anthocyanin biosynthetic process, GO:0009735 - response to cytokinin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0048316 - seed development, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000707 - pericarp color, TO:0000259 - heat tolerance, TO:0000653 - seed development trait, TO:0000075 - light sensitivity, TO:0000290 - flavonoid content, TO:0000071 - anthocyanin content, TO:0000168 - abiotic stress trait	PO:0007010 - whole plant fruit ripening stage , PO:0009066 - anther , PO:0001170 - seed development stage 
8281	BC10	BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116	BRITTLE CULM 10	brittle culm 10, fragile culm 116	DUF266-CONTAINING GOLGI-LOCALIZED GLYCOSYLTRANSFERASE	bc10, fc116	5	EF140884. LOC_Os05g07790. a Putative Beta-1,6-N-Acetylglucosaminyltransferase Protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os05g0170000	LOC_Os05g07790.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009809 - lignin biosynthetic process, GO:0009531 - secondary cell wall, GO:0008375 - acetylglucosaminyltransferase activity, GO:0016020 - membrane, GO:0031225 - anchored to membrane, GO:0005886 - plasma membrane, GO:0009808 - lignin metabolic process, GO:0009834 - secondary cell wall biogenesis, GO:0045492 - xylan biosynthetic process	TO:0000307 - hexose content, TO:0006006 - monosaccharide content, TO:0000731 - lignin content, TO:0000300 - glucose content, TO:0000051 - stem strength	
8282	BC1L1	OsBC1L1, OsPCS13, PCS13	BRITTLE CULM-LIKE 1	(sativa BRITTLE CULM1-like 1), Phytochelatin synthase 13	PHYTOCHELATIN SYNTHASE 13		3	PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os03g0301200	LOC_Os03g18910.1				GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0031225 - anchored to membrane, GO:0010215 - cellulose microfibril organization, GO:0009531 - secondary cell wall, GO:0009834 - secondary cell wall biogenesis, GO:0009808 - lignin metabolic process, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		PO:0025034 - leaf 
8283	BGAL1	OsBgal1, beta-gal, OsBGal1	BETA-GALACTOSIDASE 1	Beta-galactosidase 5, Lactase 5	BETA-GALACTOSIDASE 1		3	AF499737. AF508799. EC=3.2.1.23 Q10RB4.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0165400	LOC_Os03g06940.1, LOC_Os03g06940.2				GO:0048046 - apoplast, GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0005529 - sugar binding		
8284	BGAL10	OsBgal10, OsBGal10	BETA-GALACTOSIDASE 10		BETA-GALACTOSIDASE 10		8	Q6ZJJ0.	 Biochemical character	Os08g0549200	LOC_Os08g43570.1				GO:0048046 - apoplast, GO:0030246 - carbohydrate binding, GO:0004565 - beta-galactosidase activity, GO:0005529 - sugar binding, GO:0043169 - cation binding, GO:0005975 - carbohydrate metabolic process		
8285	BGAL11	OsBgal11, OsBGal11	BETA-GALACTOSIDASE 11	Beta-galactosidase 12, Lactase 12	BETA-GALACTOSIDASE 11		9	EU603286. EC=3.2.1.23 Q0IZZ8.	 Biochemical character	Os09g0539200	LOC_Os09g36810.1				GO:0005529 - sugar binding, GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0048046 - apoplast, GO:0043169 - cation binding		
8286	BGAL12	OsBgal12, OsBGal12	BETA-GALACTOSIDASE 12	Beta-galactosidase 13, Lactase 13	BETA-GALACTOSIDASE 12		10	EC=3.2.1.23 Q7G3T8.	 Biochemical character	Os10g0330600	LOC_Os10g18400.1				GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0005529 - sugar binding, GO:0048046 - apoplast		
8287	BGAL13	OsBgal13, OsBGal13	BETA-GALACTOSIDASE 13	Beta-galactosidase 15, Lactase 15	BETA-GALACTOSIDASE 13		12	EC=3.2.1.23 Q0INM3.	 Biochemical character	Os12g0429200	LOC_Os12g24170.1				GO:0004565 - beta-galactosidase activity, GO:0048046 - apoplast, GO:0005529 - sugar binding, GO:0043169 - cation binding, GO:0005975 - carbohydrate metabolic process		
8288	BGAL14	OsBgal14, OsBGal14, OsEnS-135, OsMEG2, MEG2	BETA-GALACTOSIDASE 14	Beta-galactosidase 14, Lactase 14, endosperm-specific gene 135, maternally expressed gene 2	BETA-GALACTOSIDASE 14	meg2-1, meg2-2	10	EC=3.2.1.23 Q7XFK2.	 Biochemical character,  Character as QTL - Yield and productivity	Os10g0340600	LOC_Os10g19960.1				GO:0005975 - carbohydrate metabolic process, GO:0005529 - sugar binding, GO:0048046 - apoplast, GO:0004565 - beta-galactosidase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0043169 - cation binding	TO:0000382 - 1000-seed weight	
8289	BGAL15	OsBgal15, OsBGal15	BETA-GALACTOSIDASE 15	Beta-galactosidase 13, Lactase 13	BETA-GALACTOSIDASE 15		6	EU051629. EC=3.2.1.23 Q7G3T8.	 Biochemical character	Os06g0628500	LOC_Os06g42310.1				GO:0005975 - carbohydrate metabolic process, GO:0043169 - cation binding, GO:0005529 - sugar binding, GO:0004565 - beta-galactosidase activity, GO:0048046 - apoplast		
8290	BGAL2	OsBgal2, OsBGal2	BETA-GALACTOSIDASE 2	Beta-galactosidase 9, Lactase 9	BETA-GALACTOSIDASE 2		6	AK102756. EC=3.2.1.23 Q5Z7L0.	 Biochemical character	Os06g0573600	LOC_Os06g37560.1				GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast, GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity		
8291	BGAL3	OsBgal3, OsBGal3	BETA-GALACTOSIDASE 3	Beta-galactosidase 2, Lactase 2	BETA-GALACTOSIDASE 3		1	EC=3.2.1.23 Q8W0A1.	 Biochemical character	Os01g0580200	LOC_Os01g39830.1				GO:0005529 - sugar binding, GO:0005975 - carbohydrate metabolic process, GO:0004565 - beta-galactosidase activity, GO:0048046 - apoplast, GO:0043169 - cation binding		
8292	BGAL4	OsBgal4, OsBGal4	BETA-GALACTOSIDASE 4	Beta-galactosidase 3, Lactase 3	BETA-GALACTOSIDASE 4		1	EC=3.2.1.23 Q5N8X6.	 Biochemical character	Os01g0875500	LOC_Os01g65460.1, LOC_Os01g65460.2				GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005529 - sugar binding, GO:0048046 - apoplast, GO:0005975 - carbohydrate metabolic process		
8293	BGAL5	OsBgal5, OsBGal5, RMP1	BETA-GALACTOSIDASE 5	Beta-galactosidase 1, Lactase 1, rice microspore-preferred 1	BETA-GALACTOSIDASE 5		1	EC=3.2.1.23 Q8RUV9. LOC_Os01g34920.	 Biochemical character	Os01g0533400	LOC_Os01g34920.1				GO:0009556 - microsporogenesis, GO:0048046 - apoplast, GO:0005975 - carbohydrate metabolic process, GO:0043169 - cation binding, GO:0005529 - sugar binding, GO:0004565 - beta-galactosidase activity		PO:0001007 - pollen development stage 
8294	BGAL6	OsBgal6, OsBGal6	BETA-GALACTOSIDASE 6	Beta-galactosidase 7, Lactase 7	BETA-GALACTOSIDASE 6		5	EU603285, EU602310. EC=3.2.1.23 Q75HQ3.	 Biochemical character	Os05g0428100	LOC_Os05g35360.1				GO:0005529 - sugar binding, GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast, GO:0004565 - beta-galactosidase activity, GO:0043169 - cation binding		
8295	BGAL7	OsBgal7, OsBGal7, CARSR12	BETA-GALACTOSIDASE 7	Beta-galactosidase 4, Lactase 4	BETA-GALACTOSIDASE 7		2	EC=3.2.1.23 Q6Z6K4(japonica), A2X2H7(indica). D29695.	 Biochemical character	Os02g0219200	LOC_Os02g12730.1, LOC_Os02g12730.2, LOC_Os02g12730.3				GO:0004565 - beta-galactosidase activity, GO:0043169 - cation binding, GO:0005975 - carbohydrate metabolic process, GO:0048046 - apoplast		
8296	BGAL8	OsBgal8, OsBGal8	BETA-GALACTOSIDASE 8	Beta-galactosidase 6, Lactase 6	BETA-GALACTOSIDASE 8		3	EC=3.2.1.23 Q10NX8.	 Biochemical character	Os03g0255100	LOC_Os03g15020.1, LOC_Os03g15020.2, LOC_Os03g15020.3				GO:0048046 - apoplast, GO:0043169 - cation binding, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0005529 - sugar binding		
8297	BGAL9	OsBgal9, OsBGal9	BETA-GALACTOSIDASE 9	Beta-galactosidase 8, Lactase 8	BETA-GALACTOSIDASE 9		5	EC=3.2.1.23 Q0DGD7.	 Biochemical character	Os05g0539400	LOC_Os05g46200.1, LOC_Os05g46200.2, LOC_Os05g46200.3				GO:0043169 - cation binding, GO:0048046 - apoplast, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process		
8298	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8	CADMIUM TOLERANT 1	sativa DcCDT1 homologue 1, cation/Ca2+ exchanger 2, cadmium tolerance 1, Na+/Ca2+ Exchanger 8, Sodium/calcium exchanger 8	CATION/CA2+ EXCHANGER 2	ccx2, ccx2-1, ccx2-2	3	onoplastic calcium exchanger. Oryza barthii: ObarCCX2: OBART03G28130, Oryza brachyantha: ObraCCX2: OB03G35770/OB03G35780, Oryza glaberrima: OglaCCX2: ORGLA03G0260000, Oryza glumipatula: OgluCCX2: OGLUM03G28760, Oryza longistaminata: OlCCX2: OLONG_012097 (only partial length sequence available), Oryza meridionalis: OmCCX2: OMERI03G24770, Oryza nivara: OnCCX2: ONIVA03G29160, Oryza punctata: OpCCX2: OPUNC03G25630, Oryza rufipogon: OrCCX2: ORUFI03G29260. TO:0006059: cadmium content trait. TO:0020096: mineral and ion transport trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0656500	LOC_Os03g45370.1				GO:0051592 - response to calcium ion, GO:0070574 - cadmium ion transmembrane transport, GO:0010039 - response to iron ion, GO:0010038 - response to metal ion, GO:0010043 - response to zinc ion, GO:0010226 - response to lithium ion, GO:0032025 - response to cobalt ion, GO:0009737 - response to abscisic acid stimulus, GO:0010233 - phloem transport, GO:0015691 - cadmium ion transport, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009411 - response to UV, GO:0005886 - plasma membrane, GO:0015086 - cadmium ion transmembrane transporter activity	TO:0006001 - salt tolerance, TO:0000224 - iron sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000006 - calcium sensitivity, TO:0000160 - UV light sensitivity, TO:0000351 - zinc sensitivity	PO:0000074 - parenchyma cell , PO:0005352 - xylem , PO:0020141 - stem node , PO:0009015 - portion of vascular tissue , PO:0005020 - vascular bundle 
8299	CDT2	OsCDT2	CADMIUM TOLERANT 2	sativa DcCDT1 homologue 2, cadmium tolerance 2	CDT2		6		 Tolerance and resistance - Stress tolerance	Os06g0143100	LOC_Os06g05120.1, LOC_Os06g05120.2				GO:0046686 - response to cadmium ion		
8300	CDT3	OsCDT3	CADMIUM TOLERANT 3	sativa DcCDT1 homologue 3, cadmium tolerance 3	CDT3		1	GO:0071585:detoxification of cadmium ion. AB787528.	 Tolerance and resistance - Stress tolerance	Os01g0178300	LOC_Os01g08300.1				GO:0005886 - plasma membrane, GO:0010044 - response to aluminum ion, GO:0046686 - response to cadmium ion	TO:0000354 - aluminum sensitivity	PO:0009005 - root 
8301	CDT4	OsCDT4	CADMIUM TOLERANT 4	sativa DcCDT1 homologue 4, cadmium tolerance 4	CDT4		2		 Tolerance and resistance - Stress tolerance	Os02g0208500	LOC_Os02g11770.1				GO:0046686 - response to cadmium ion, GO:0010044 - response to aluminum ion	TO:0000354 - aluminum sensitivity	
8302	CDT5	OsCDT5	CADMIUM TOLERANT 5	sativa DcCDT1 homologue 5, cadmium tolerance 5	CDT5		5		 Tolerance and resistance - Stress tolerance	Os05g0178300	LOC_Os05g08554.1				GO:0046686 - response to cadmium ion		
8304	DCL1A	OsDCL1a	DICER-LIKE 1A		DICER-LIKE PROTEIN 1A		3		 Biochemical character						GO:0000287 - magnesium ion binding, GO:0005634 - nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0006396 - RNA processing, GO:0030145 - manganese ion binding, GO:0004525 - ribonuclease III activity, GO:0031047 - gene silencing by RNA, GO:0003725 - double-stranded RNA binding		
8305	DCL1B	OsDCL1b	DICER-LIKE 1B		DICER-LIKE PROTEIN 1B		6		 Biochemical character						GO:0000287 - magnesium ion binding, GO:0004525 - ribonuclease III activity, GO:0005524 - ATP binding, GO:0003725 - double-stranded RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0005634 - nucleus, GO:0006396 - RNA processing, GO:0031047 - gene silencing by RNA, GO:0030145 - manganese ion binding		
8306	DCL1C	OsDCL1c	DICER-LIKE 1C		DICER-LIKE PROTEIN 1C		5		 Biochemical character						GO:0008026 - ATP-dependent helicase activity, GO:0000287 - magnesium ion binding, GO:0004525 - ribonuclease III activity, GO:0030145 - manganese ion binding, GO:0031047 - gene silencing by RNA, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0003725 - double-stranded RNA binding, GO:0006396 - RNA processing		
8307	DCL2A	OsDCL2a, OsDCL2, DCL2	DICER-LIKE 2A	Endoribonuclease Dicer homolog 2a, Dicer-like protein 2a	DICER-LIKE PROTEIN 2A		3	EC=3.1.26.- Q10HL3.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0583900	LOC_Os03g38740.1				GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0030145 - manganese ion binding, GO:0003725 - double-stranded RNA binding, GO:0006396 - RNA processing, GO:0050832 - defense response to fungus, GO:0004525 - ribonuclease III activity, GO:0005634 - nucleus, GO:0031047 - gene silencing by RNA, GO:0000287 - magnesium ion binding	TO:0000355 - heterosis, TO:0000074 - blast disease	
8308	DCL2B	OsDCL2b	DICER-LIKE 2B	Endoribonuclease Dicer homolog 2b, Dicer-like protein 2b	DICER-LIKE PROTEIN 2B		9	EC=3.1.26.- Q69LX2.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0315100	LOC_Os09g14610.1, LOC_Os09g14610.2, LOC_Os09g14610.3				GO:0005524 - ATP binding, GO:0003725 - double-stranded RNA binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0000287 - magnesium ion binding, GO:0030145 - manganese ion binding, GO:0031047 - gene silencing by RNA, GO:0004525 - ribonuclease III activity, GO:0006396 - RNA processing, GO:0008026 - ATP-dependent helicase activity	TO:0000074 - blast disease	
8309	DCL3A	OsDCL3a	DICER-LIKE 3A	Endoribonuclease Dicer homolog 3a, Dicer-like protein 3a	DICER-LIKE PROTEIN 3A		1	EC=3.1.26.- Q5N870. LOC_Os01g68120.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Reproductive organ - Inflorescence,  Vegetative organ - Culm,  Biochemical character	Os01g0909200	LOC_Os01g68120.1				GO:0005634 - nucleus, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0006396 - RNA processing, GO:0030145 - manganese ion binding, GO:0050832 - defense response to fungus, GO:0031047 - gene silencing by RNA, GO:0004525 - ribonuclease III activity, GO:0004386 - helicase activity, GO:0003723 - RNA binding, GO:0003677 - DNA binding	TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000124 - flag leaf angle, TO:0000557 - secondary branch number	
8310	DCL3B	OsDCL3b	DICER-LIKE 3B	Endoribonuclease Dicer homolog 3b, Dicer-like protein 3b	DICER-LIKE PROTEIN 3B		10	Q7XD96. GO:1902893: regulation of pri-miRNA transcription by RNA polymerase II.	 Character as QTL - Yield and productivity,  Biochemical character,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits	Os10g0485600	LOC_Os10g34430.1				GO:0000287 - magnesium ion binding, GO:0003725 - double-stranded RNA binding, GO:0005634 - nucleus, GO:0006396 - RNA processing, GO:0009536 - plastid, GO:0030145 - manganese ion binding, GO:0000380 - alternative nuclear mRNA splicing, via spliceosome, GO:0031047 - gene silencing by RNA, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0004525 - ribonuclease III activity	TO:0000598 - protein content, TO:0000421 - pollen fertility, TO:0000455 - seed set percent, TO:0002673 - amino acid content, TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0000180 - spikelet fertility	
8312	DMAS1	OsDMAS1, OsAKR5, AKR5	DEOXYMUGINEIC ACID SYNTHASE 1	sativa deoxymugineic acid synthase1, Deoxymugineic acid synthase1, Deoxymugineic acid synthase 1, deoxymugineic acid synthase1, Group 5 Aldo-Keto Reductase	DEOXYMUGINEIC ACID SYNTHASE 1		3	AB269906. AU173810. one of eight members of Group 5 Aldo-Keto Reductase. TO:0006049: iron concentration. TO:0006053: zinc concentration.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0237100	LOC_Os03g13390.2	GR:0080053			GO:0010040 - response to iron(II) ion, GO:0010106 - cellular response to iron ion starvation, GO:0016491 - oxidoreductase activity, GO:0006826 - iron ion transport	TO:0000224 - iron sensitivity	PO:0006036 - root epidermis , PO:0005772 - exodermis , PO:0000071 - companion cell , PO:0000258 - root cortex , PO:0005020 - vascular bundle , PO:0005417 - phloem , PO:0005421 - parenchyma , PO:0020124 - root stele , PO:0009005 - root , PO:0006203 - pericycle 
8314	F3'H	OsF3'H, OsCYP75B3, CYP75B3, OsF3'H10, F3'H10, OsCYP71P3, CYP71P3	FLAVONOID 3'-HYDROXYLASE	sativa flavonoid 3'-hydroxylase, Flavanone 3'-hydroxylase, P-450 75B3, Cytochrome P450 75B3, flavonoid 3'-monooxygenase, flavonoid 3'-hydroxylase 10	FLAVONOID 3'-HYDROXYLASE	cyp75b3, cyp75b3-a, cyp75b3-b	10	HQ876708. BGIOSGA032683. OsF3H in Um et al. 2022. OsF3'H10 in Wang et al. 2022. OsCYP71P3 in Sahoo et al. 2023. TO:0001109: grain color trait. 	 Coloration - Anthocyanin,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits,  Seed	Os10g0320100	LOC_Os10g17260.1				GO:0045486 - naringenin 3-dioxygenase activity, GO:0020037 - heme binding, GO:0009813 - flavonoid biosynthetic process, GO:0016021 - integral to membrane, GO:0009408 - response to heat, GO:0009718 - anthocyanin biosynthetic process, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0048316 - seed development, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000071 - anthocyanin content	PO:0001170 - seed development stage 
8315	FDH	OsFDH, FDH 1, FDH1, OsFDH1	FORMATE DEHYDROGENASE	Formate dehydrogenase 1, mitochondrial, NAD-dependent formate dehydrogenase 1, Nad-dependent formate dehydrogenase	FORMATE DEHYDROGENASE		6	AB019533. D23770. EC=1.2.1.2 Q9SXP2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0486800	LOC_Os06g29180.1				GO:0008863 - formate dehydrogenase activity, GO:0019509 - methionine salvage, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0051287 - NAD or NADH binding, GO:0005739 - mitochondrion, GO:0055114 - oxidation reduction	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
8316	FER1	OsFER1, OsFer1	FERRITIN 1	Ferritin 1, Ferritin	FERRITIN 1		11	AF519570.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0106700	LOC_Os11g01530.1, LOC_Os11g01530.2				GO:0009617 - response to bacterium, GO:0009741 - response to brassinosteroid stimulus, GO:0009409 - response to cold, GO:0006879 - cellular iron ion homeostasis, GO:0005739 - mitochondrion, GO:0042542 - response to hydrogen peroxide, GO:0009941 - chloroplast envelope, GO:0010039 - response to iron ion, GO:0006826 - iron ion transport, GO:0009570 - chloroplast stroma, GO:0008199 - ferric iron binding, GO:0010040 - response to iron(II) ion, GO:0070288 - ferritin complex, GO:0010043 - response to zinc ion, GO:0009535 - chloroplast thylakoid membrane, GO:0016491 - oxidoreductase activity, GO:0009908 - flower development, GO:0048366 - leaf development, GO:0015979 - photosynthesis, GO:0009737 - response to abscisic acid stimulus	TO:0002677 - brassinosteroid sensitivity, TO:0000224 - iron sensitivity, TO:0000303 - cold tolerance	
8317	FER2	OsFER2, OsFer2	FERRITIN 2		FERRITIN 2	deltaOsfer2#3, deltaOsfer2#4	12	AF519571. D49189, AU082276. GO:0097707: ferroptosis. GO:1903428: positive regulation of reactive oxygen species biosynthetic process. TO:0020089: iron content trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0106000	LOC_Os12g01530.1, LOC_Os12g01530.2, LOC_Os12g01530.3				GO:0055072 - iron ion homeostasis, GO:0010039 - response to iron ion, GO:0009570 - chloroplast stroma, GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0009617 - response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009626 - plant-type hypersensitive response, GO:0009535 - chloroplast thylakoid membrane, GO:0009507 - chloroplast, GO:0050832 - defense response to fungus, GO:0043067 - regulation of programmed cell death, GO:0031667 - response to nutrient levels, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0005739 - mitochondrion, GO:0008199 - ferric iron binding, GO:0016491 - oxidoreductase activity, GO:0009941 - chloroplast envelope, GO:0010043 - response to zinc ion, GO:0070288 - ferritin complex, GO:0006879 - cellular iron ion homeostasis, GO:0009908 - flower development, GO:0006826 - iron ion transport, GO:0048366 - leaf development, GO:0046688 - response to copper ion, GO:0015979 - photosynthesis	TO:0000432 - temperature response trait, TO:0000605 - hydrogen peroxide content, TO:0000021 - copper sensitivity, TO:0000074 - blast disease, TO:0000102 - phosphorus sensitivity	
8318	IPD3	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS	INTERACTING PROTEIN OF DMI 3	sativa DMI3 interacting protein, sativa interacting protein of DMI3, DMI3 interacting protein IPD3	INTERACTING PROTEIN OF DMI 3	cyclops	6	EF569223.	 Biochemical character,  Other	Os06g0115600	LOC_Os06g02520.1				GO:0005634 - nucleus, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0004683 - calmodulin-dependent protein kinase activity, GO:0009620 - response to fungus, GO:0009609 - response to symbiotic bacterium		PO:0009005 - root 
8319	LOX1	OsLOX1, OsLOX5	LIPOXYGENASE 1	lipoxygenase 1, Probable lipoxygenase 4, lipoxygenase 5	LIPOXYGENASE 1		3	dual positional specificity lipoxygenase.  DQ389164. EC=1.13.11.12 Q53RB0. FJ660625, FJ660626, AP008209 (27906867-27913264). OsLOX5 in Marla and Singh 201, Hu et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0700700	LOC_Os03g49380.3, LOC_Os03g49380.2, LOC_Os03g49380.1				GO:0031408 - oxylipin biosynthetic process, GO:0005506 - iron ion binding, GO:0009651 - response to salt stress, GO:0009266 - response to temperature stimulus, GO:0009414 - response to water deprivation, GO:0055114 - oxidation reduction, GO:0009611 - response to wounding, GO:0016165 - lipoxygenase activity	TO:0000432 - temperature response trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
8320	LSI6	Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2	LOW SILICON RICE 6	Low silicon rice 6, Aquaporin NIP2-2, NOD26-like intrinsic protein 2-2	NOD26-LIKE MEMBRANE INTEGRAL PROTEIN		6	AB253627, AC003569, Q67WJ8. a passive Si channel (Lsi1-like) gene. GO:1901684: arsenate ion transmembrane transport. TO:0006054: arsenic content trait.	 Tolerance and resistance - Insect resistance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os06g0228200	LOC_Os06g12310.1				GO:0016020 - membrane, GO:0046685 - response to arsenic, GO:0010035 - response to inorganic substance, GO:0005215 - transporter activity, GO:0015104 - antimonite transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0032523 - silicon efflux transmembrane transporter activity, GO:0051207 - silicic acid transport, GO:0042594 - response to starvation	TO:0000007 - sulfur sensitivity, TO:0000031 - silicon sensitivity	PO:0020141 - stem node 
8321	NAAT	OsNAAT	NICOTINAMINE AMINOTRANSFERASE	Nicotianamine aminotransferase	NICOTINAMINE AMINOTRANSFERASE				 Biochemical character						GO:0006826 - iron ion transport, GO:0055065 - metal ion homeostasis, GO:0033855 - nicotianamine aminotransferase activity		
8322	NAAT1	OsNAAT1	NICOTINAMINE AMINOTRANSFERASE 1	sativa nicotianamine aminotransferase 1, nicotianamine aminotransferase	NICOTINAMINE AMINOTRANSFERASE 1		2	AB206814. D25143, AU173091. TAT (tyrosine aminotransferase) in Jardim-Messeder et al. 2023. GO:1990641: response to iron ion starvation.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0306401	LOC_Os02g20360.2, LOC_Os02g20360.1	GR:0080046			GO:0033855 - nicotianamine aminotransferase activity, GO:0008652 - cellular amino acid biosynthetic process, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0046394 - carboxylic acid biosynthetic process, GO:0042594 - response to starvation, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0006519 - cellular amino acid and derivative metabolic process, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0046688 - response to copper ion, GO:0009536 - plastid, GO:0009058 - biosynthetic process, GO:0008483 - transaminase activity, GO:0006826 - iron ion transport	TO:0000021 - copper sensitivity, TO:0000351 - zinc sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000224 - iron sensitivity	PO:0020124 - root stele , PO:0009006 - shoot system , PO:0009005 - root , PO:0000258 - root cortex , PO:0000272 - protoxylem , PO:0006036 - root epidermis , PO:0000071 - companion cell , PO:0006203 - pericycle , PO:0009010 - seed , PO:0005772 - exodermis 
8323	NAAT2	OsNAAT2	NICOTINAMINE AMINOTRANSFERASE 2	sativa nicotianamine aminotransferase 2	NICOTINAMINE AMINOTRANSFERASE 2		2	AK060537	 Biochemical character	Os02g0302700	LOC_Os02g19970.1, LOC_Os02g19970.2				GO:0033855 - nicotianamine aminotransferase activity, GO:0006826 - iron ion transport, GO:0055065 - metal ion homeostasis		
8324	NAAT3	OsNAAT3	NICOTINAMINE AMINOTRANSFERASE 3	sativa nicotianamine aminotransferase 3	NICOTINAMINE AMINOTRANSFERASE 3		2	Os02g0302400 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character						GO:0033855 - nicotianamine aminotransferase activity, GO:0055065 - metal ion homeostasis, GO:0006826 - iron ion transport		
8325	NAAT4	OsNAAT4, OsNAAT1	NICOTINAMINE AMINOTRANSFERASE 4	sativa nicotianamine aminotransferase 4	NICOTINAMINE AMINOTRANSFERASE 4		6	OsNAAT1 in Suzuki et al. 2012.	 Biochemical character	Os06g0345200	LOC_Os06g23684.1, LOC_Os06g23684.2				GO:0055065 - metal ion homeostasis, GO:0006826 - iron ion transport, GO:0033855 - nicotianamine aminotransferase activity		
8326	NAAT5	OsNAAT5	NICOTINAMINE AMINOTRANSFERASE 5	sativa nicotianamine aminotransferase 5	NICOTINAMINE AMINOTRANSFERASE 5		11	Os11g0552000	 Biochemical character	Os11g0552000	LOC_Os11g35040.1				GO:0055065 - metal ion homeostasis, GO:0006826 - iron ion transport, GO:0033855 - nicotianamine aminotransferase activity		
8327	NAAT6	OsNAAT6	NICOTINAMINE AMINOTRANSFERASE 6	sativa nicotianamine aminotransferase 6	NICOTINAMINE AMINOTRANSFERASE 6			AK060557	 Biochemical character						GO:0055065 - metal ion homeostasis, GO:0033855 - nicotianamine aminotransferase activity, GO:0006826 - iron ion transport		
8328	NRAMP4	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, NRAT1, FCO5	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 4	BACTERIOCIDE EFFECT 4, Nramp aluminum transporter 1, Functioning in Cesium Over-transport 5	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 4	NRAT1.1, NRAT1.2, NRAT1.3	2	Q6ZG85. OsNRAT1 in Li et al. 2014, Zhu et al. 2019. GO:1904880: response to hydrogen sulfide. GO:1904585: response to putrescine. TO:0000995: aluminum content trait. GO:1902602: aluminum ion transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0131800	LOC_Os02g03900.1				GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0005886 - plasma membrane, GO:0015083 - aluminum ion transmembrane transporter activity, GO:0010044 - response to aluminum ion	TO:0000354 - aluminum sensitivity	PO:0025034 - leaf 
8329	LCD1	NRAMP5, OsNRAMP5, OsNramp5, OsLCD1	LOW CADMIUM ACCUMULATION 1	BACTERIOCIDE EFFECT 5, NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5, low cadmium accumulation 1	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5	osnramp5, osnramp5-1, lcd-kmt1, osnramp5-2, lcd-kmt2, osnramp5-3, lcdkmt3, nramp5, OsNramp5-1, OsNramp5-2, OsNramp5-3, cr-OsNramp5, cr-OsNramp5-1	7	Q8H4H5. AB690551, AB690552, AB690553. AB698459. MH07t0175300. TO:0006059: cadmium concentration. TO:0006059: cadmium content trait. TO:1000056: shoot system cadmium content. TO:1000030: root system cadmium content. TO:1000039: root system manganese content. TO:1000064: shoot system manganese content. TO:0006048: manganese concentration. one of the two candidate genes for qSER-7 (QTL for stigma exsertion rate on chromosome 7). TO:0006059: cadmium content trait. GO:0097054: L-glutamate biosynthetic process. TO:0020096: mineral and ion transport trait. TO:0020090: zinc content trait. GO:1900425: negative regulation of defense response to bacterium. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0020089: iron content trait. TO:0001048: silicon content trait. TO:0001044: cobalt content trait. TO:0006051: nickel content. TO:0001045: chromium content trait. TO:0006054: arsenic content trait.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Seed - Physiological traits - Storage substances,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os07g0257200	LOC_Os07g15370.1, LOC_Os07g15370.2				GO:0002679 - respiratory burst during defense response, GO:0006828 - manganese ion transport, GO:0006537 - glutamate biosynthetic process, GO:0006811 - ion transport, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0055072 - iron ion homeostasis, GO:0005886 - plasma membrane, GO:0010233 - phloem transport, GO:0007623 - circadian rhythm, GO:0010378 - temperature compensation of the circadian clock, GO:0042742 - defense response to bacterium, GO:0009266 - response to temperature stimulus, GO:0015691 - cadmium ion transport, GO:0002237 - response to molecule of bacterial origin, GO:0006523 - alanine biosynthetic process, GO:0006826 - iron ion transport, GO:0010033 - response to organic substance, GO:0009094 - L-phenylalanine biosynthetic process, GO:0046686 - response to cadmium ion, GO:0070574 - cadmium ion transmembrane transport, GO:0009088 - threonine biosynthetic process	TO:0000388 - forage yield, TO:0000495 - chlorophyll content, TO:0000432 - temperature response trait, TO:0000605 - hydrogen peroxide content, TO:0000333 - sugar content, TO:0002673 - amino acid content, TO:0000397 - grain size, TO:0000044 - stigma exsertion, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0020091 - manganese content, TO:0000203 - bacterial leaf streak disease resistance, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content	PO:0005772 - exodermis , PO:0005059 - root endodermis 
8330	NRAMP6	OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6, OsNramp6.8, OsNramp1	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6	BACTERIOCIDE EFFECT 6, Natural resistance-associated macrophage protein 6	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6	nramp6	1	Q5QN13. l-Nramp6 (full-length, LOC_Os01g31870.1), s-Nramp6 (shortest, LOC_Os01g31870.8). GO:1900150: regulation of defense response to fungus. OsNramp1 in Ma et al. 2021. TO:0020090: zinc content trait.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0503400	LOC_Os01g31870.8, LOC_Os01g31870.7, LOC_Os01g31870.6, LOC_Os01g31870.1, LOC_Os01g31870.2, LOC_Os01g31870.3, LOC_Os01g31870.4, LOC_Os01g31870.5				GO:0031348 - negative regulation of defense response, GO:0016021 - integral to membrane, GO:0055072 - iron ion homeostasis, GO:0006811 - ion transport, GO:0005215 - transporter activity, GO:0009814 - defense response, incompatible interaction, GO:0051707 - response to other organism, GO:0030001 - metal ion transport, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0006826 - iron ion transport, GO:0006828 - manganese ion transport, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000276 - drought tolerance	
8331	NRAMP7	OsNRAMP7	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 7	BACTERIOCIDE EFFECT 7	NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 7		12	Q2QN30. TO:0006053: zinc concentration.	 Biochemical character	Os12g0581600	LOC_Os12g39180.1				GO:0006811 - ion transport, GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0030001 - metal ion transport		
8335	HB4	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3, OsHDZ13, OsHDZIP13, HDZ13, HDZIP13	HOMEODOMAIN CONTAINING PROTEIN 4	Homeobox-leucine zipper protein HOX32, Homeodomain transcription factor HOX32, HD-ZIP protein HOX32, rice homeobox gene 32, homeodomain-leucine zipper transcription factor 13, OsHDZIP transcription factor 13	HOMEODOMAIN CONTAINING PROTEIN 4		3	A2XK30(indica), Q6AST1(japonica). EF555551. closely related to Arabidopsis PHB. orthologous to both Arabidopsis PHB and PHV. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:2000024: regulation of leaf development. TO:0006064: rolled leaf. TO:0006059: cadmium content trait. a major target of miR166. HB3 in Liu et al. 2019. GO:1904583: response to polyamine macromolecule.	 Vegetative organ - Culm,  Coloration - Chlorophyll,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Leaf	Os03g0640800	LOC_Os03g43930.2, LOC_Os03g43930.1				GO:0003700 - transcription factor activity, GO:0042546 - cell wall biogenesis, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0048366 - leaf development, GO:0005886 - plasma membrane, GO:0009416 - response to light stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0046686 - response to cadmium ion	TO:0000163 - auxin sensitivity, TO:0001015 - photosynthetic rate, TO:0000172 - jasmonic acid sensitivity, TO:0000655 - leaf development trait, TO:0001017 - water use efficiency, TO:0000075 - light sensitivity, TO:0000370 - leaf width, TO:0000085 - leaf rolling, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000051 - stem strength, TO:0000206 - leaf angle, TO:0000495 - chlorophyll content, TO:0000207 - plant height	PO:0009089 - endosperm , PO:0009005 - root , PO:0025034 - leaf , PO:0001050 - leaf development stage , PO:0009049 - inflorescence 
8337	PDR20	OsPDR20	PLEIOTROPIC DRUG RESISTANCE 20	sativa pleiotropic drug resistance 20	PLEIOTROPIC DRUG RESISTANCE 20				 Biochemical character						GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006810 - transport, GO:0016021 - integral to membrane		
8339	PDR6	OsPDR6, OsABCG31, OsABCG31_1	PLEIOTROPIC DRUG RESISTANCE 6	sativa pleiotropic drug resistance 6, Pleiotropic drug resistance protein 6, ABC transporter superfamily ABCG subgroup member 31, ATP-binding Cassette Transporter G31	PLEIOTROPIC DRUG RESISTANCE PROTEIN 6	osabcg31.b, osabcg31.c, osabcg31	1	Q8GU87. AJ535049. The rice ortholog of the barley Eibi1.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os01g0177900	LOC_Os01g08260.1, LOC_Os01g08260.2				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0010143 - cutin biosynthetic process, GO:0050832 - defense response to fungus, GO:0016887 - ATPase activity, GO:0042335 - cuticle development, GO:0005524 - ATP binding, GO:0006810 - transport	TO:0000207 - plant height, TO:0000074 - blast disease	
8340	PDR8	OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4	PLEIOTROPIC DRUG RESISTANCE 8	sativa pleiotropic drug resistance 8, Pleiotropic drug resistance protein 4, ABC transporter superfamily ABCG subgroup member 37, pleiotropic drug resistance 4	PLEIOTROPIC DRUG RESISTANCE PROTEIN 8		1	Q8GU89. AJ535047. BK001018. BI810084, AU065437, AU065360, AU101680, BM418923, AU167015, BM420554, BI810496.	 Biochemical character	Os01g0609900	LOC_Os01g42410.1				GO:0016021 - integral to membrane, GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0006810 - transport		
8341	PDR9	OsPDR9, ospdr9, OsPDR3, PDR3, OsABCG36/OsPDR9, OsABCG36	PLEIOTROPIC DRUG RESISTANCE 9	pleiotropic drug resistance 9, PDR-type ABC transporter 9, sativa pleiotropic drug resistance 3, pleiotropic drug resistance 3, Pleiotropic drug resistance protein 3	PLEIOTROPIC DRUG RESISTANCE 9		1	AY271618, AJ535046. BK001017. D22472, BM421151, AF093586. BF889480. A2WSH0(indica). Q0JLC5(japonica).	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0609300	LOC_Os01g42380.1				GO:0005524 - ATP binding, GO:0006810 - transport, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016887 - ATPase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
8342	RDR1	OsRDR1	RNA-DEPENDENT RNA POLYMERASE 1	RNA-dependent RNA polymerase 1, Probable RNA-dependent RNA polymerase 1	RNA-DEPENDENT RNA POLYMERASE 1		2	EC=2.7.7.48 Q0DXS3. LOC_Os02g50330.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0736200	LOC_Os02g50330.1				GO:0003723 - RNA binding, GO:0051607 - defense response to virus, GO:0003968 - RNA-directed RNA polymerase activity, GO:0031047 - gene silencing by RNA	TO:0000148 - viral disease resistance	
8343	RDR2	OsRDR2	RNA-DEPENDENT RNA POLYMERASE 2	RNA-dependent RNA polymerase 2, Probable RNA-dependent RNA polymerase 2	RNA-DEPENDENT RNA POLYMERASE 2	rdr2-2	4	LOC_Os04g39160. EC=2.7.7.48 Q7XM31. targeted by osa-miR818 (Qin et al. 2017).	 Biochemical character	Os04g0465700	LOC_Os04g39160.1				GO:0031047 - gene silencing by RNA, GO:0003968 - RNA-directed RNA polymerase activity, GO:0003723 - RNA binding	TO:0002675 - gibberellic acid content, TO:0002676 - brassinosteroid content	
8344	RDR3	OsRDR3, OsRDR3a	RNA-DEPENDENT RNA POLYMERASE 3	RNA-dependent RNA polymerase 3, Probable RNA-dependent RNA polymerase 3	RNA-DEPENDENT RNA POLYMERASE 3		1	EC=2.7.7.48 Q5QMN5. OsRDR3a in Yang et al 2007, Zong et al. 2009 and Jiang et al. 2011. 	 Biochemical character	Os01g0197900	LOC_Os01g10130.1				GO:0003723 - RNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0031047 - gene silencing by RNA, GO:0003968 - RNA-directed RNA polymerase activity	TO:0000615 - abscisic acid sensitivity	
8345	RDR4	OsRDR4, OsRDR3b	RNA-DEPENDENT RNA POLYMERASE 4	RNA-dependent RNA polymerase 4, Probable RNA-dependent RNA polymerase 4	RNA-DEPENDENT RNA POLYMERASE 4		1	EC=2.7.7.48 Q5QMN4. OsRDR3b in Zong et al. 2009 and Jiang et al. 2011.	 Biochemical character	Os01g0198000	LOC_Os01g10140.2, LOC_Os01g10140.3				GO:0003723 - RNA binding, GO:0031047 - gene silencing by RNA, GO:0003968 - RNA-directed RNA polymerase activity		
8347	TRBF1	OsTRBF1	TELOMERE REPEAT-BINDING FACTOR 1	sativa telomere repeat-binding factor 1	TELOMERE REPEAT-BINDING FACTOR 1		1			Os01g0589300	LOC_Os01g40670.2, LOC_Os01g40670.1				GO:0042162 - telomeric DNA binding, GO:0000781 - chromosome, telomeric region, GO:0003677 - DNA binding, GO:0005730 - nucleolus, GO:0006334 - nucleosome assembly		
8349	TRBF3	OsTRBF3	TELOMERE REPEAT-BINDING FACTOR 3	sativa telomere repeat-binding factor 3	TELOMERE REPEAT-BINDING FACTOR 3		1	AJ495797.		Os01g0708000	LOC_Os01g51154.3, LOC_Os01g51154.2, LOC_Os01g51154.1				GO:0045910 - negative regulation of DNA recombination, GO:0042162 - telomeric DNA binding, GO:0003690 - double-stranded DNA binding, GO:0016584 - nucleosome positioning, GO:0005730 - nucleolus, GO:0005634 - nucleus, GO:0000781 - chromosome, telomeric region, GO:0006334 - nucleosome assembly, GO:0031492 - nucleosomal DNA binding, GO:0030261 - chromosome condensation, GO:0031936 - negative regulation of chromatin silencing, GO:0003677 - DNA binding		
8350	YSL1	OsYSL1, OsYs1	YELLOW STRIP-LIKE GENE 1	rice YSL (yellow stripe-like) gene 1, Probable metal-nicotianamine transporter YSL1, Protein YELLOW STRIPE LIKE 1, yellow stripe 1-like transporter 1	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL1		1	Q9FTU1. AB190912. AU108928. TO:0006049: iron concentration. TO:0006053: zinc concentration.	 Biochemical character	Os01g0238700	LOC_Os01g13710.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane		
8351	YSL10	OsYSL10	YELLOW STRIP-LIKE GENE 10	rice YSL (yellow stripe-like) gene 10, Probable metal-nicotianamine transporter YSL10, Protein YELLOW STRIPE LIKE 10, yellow stripe 1-like transporter 10	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL10		4	Q0J932. AB190920.	 Biochemical character	Os04g0674600	LOC_Os04g57840.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8352	YSL11	OsYSL11	YELLOW STRIP-LIKE GENE 11	rice YSL (yellow stripe-like) gene 11, Probable metal-nicotianamine transporter YSL11, Protein YELLOW STRIPE LIKE 11, yellow stripe 1-like transporter 11	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL11		4	Q7X660. AB190921.	 Biochemical character	Os04g0524900	LOC_Os04g44330.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8353	YSL12	OsYSL12, OsYs11	YELLOW STRIP-LIKE GENE 12	rice YSL (yellow stripe-like) gene 12, Probable metal-nicotianamine transporter YSL12, Protein YELLOW STRIPE LIKE 12, yellow stripe 1-like transporter 12	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL12		4	AB190922. Q5JQD7. AU068199, AU068198, AU068880.	 Biochemical character	Os04g0524600	LOC_Os04g44320.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8354	YSL13	OsYSL13, OsYs12	YELLOW STRIP-LIKE GENE 13	rice YSL (yellow stripe-like) gene 13, Probable metal-nicotianamine transporter YSL13, Protein YELLOW STRIPE LIKE 13, yellow stripe 1-like transporter 13	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL13		4	AB164644. Q7XKF4. AU181651, BM421051, BI812310.	 Biochemical character	Os04g0524500	LOC_Os04g44300.2, LOC_Os04g44300.1				GO:0009751 - response to salicylic acid stimulus, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0016020 - membrane		
8355	YSL14	OsYSL14, OsYs5	YELLOW STRIP-LIKE GENE 14	rice YSL (yellow stripe-like) gene 14, Probable metal-nicotianamine transporter YSL14, Protein YELLOW STRIPE LIKE 14, yellow stripe 1-like transporter 14	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL14		2	Q6H7J6. AB164645. C91598, D24925, AU064354, AU165061, AU064343, AU064290, AU031949, D21962.	 Biochemical character	Os02g0633300	LOC_Os02g42220.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8356	YSL15	OsYSL15, OsYs7	YELLOW STRIP-LIKE GENE 15	rice YSL (yellow stripe-like) gene 15, Iron-phytosiderophore transporter YSL15, Protein YELLOW STRIPE LIKE 15, ferric Fe-DMA transporter OsYSL15, yellow stripe 1-like transporter 15	IRON-PHYTOSIDEROPHORE TRANSPORTER YSL15		2	IRON-REGULATED IRON(III)-DEOXYMUGINEIC ACID TRANSPORTER. Q6H3Z3. AB190923. D24682. AU031880, AU082716, AU184448, AU032408, D24664. TO:0006049: iron concentration. TO:0006053: zinc concentration. TO:0020090: zinc content trait. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0650300	LOC_Os02g43410.1, LOC_Os02g43410.2				GO:0009739 - response to gibberellin stimulus, GO:0006865 - amino acid transport, GO:0046942 - carboxylic acid transport, GO:0006826 - iron ion transport, GO:0009609 - response to symbiotic bacterium, GO:0034224 - cellular response to zinc ion starvation, GO:0010039 - response to iron ion, GO:0010040 - response to iron(II) ion, GO:0055085 - transmembrane transport, GO:0005506 - iron ion binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0042594 - response to starvation, GO:0010106 - cellular response to iron ion starvation	TO:0000166 - gibberellic acid sensitivity, TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	PO:0009005 - root 
8357	YSL16	OsYSL16, Os-YSL16, OsYs14	YELLOW STRIP-LIKE GENE 16	rice YSL (yellow stripe-like) gene 16, Probable metal-nicotianamine transporter YSL16, Protein YELLOW STRIPE LIKE 16, yellow stripe 1-like transporter 16, Yellow stripe-like16, Yellow Stripe1-Like 16	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL16	osysl16-1, osysl16	4	AB190924. Q7XN54. AB673450. AU082725, AU082724. TO:0020092: copper content trait. GO:1904583: response to polyamine macromolecule. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os04g0542800	LOC_Os04g45900.1				GO:0009846 - pollen germination, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0010167 - response to nitrate, GO:0055085 - transmembrane transport, GO:0060359 - response to ammonium ion, GO:0051982 - copper-nicotianamine transmembrane transporter activity	TO:0000421 - pollen fertility	PO:0009037 - lemma , PO:0009038 - palea , PO:0009080 - spikelet rachilla , PO:0005020 - vascular bundle 
8358	YSL17	OsYSL17, OsYs18	YELLOW STRIP-LIKE GENE 17	rice YSL (yellow stripe-like) gene 17, Probable metal-nicotianamine transporter YSL17, Protein YELLOW STRIPE LIKE 17, yellow stripe 1-like transporter 17	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL17		8	AB190925. Q6ZCX1.	 Biochemical character	Os08g0280300	LOC_Os08g17830.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8359	YSL18	OsYSL18, OsYs2	YELLOW STRIP-LIKE GENE 18	rice YSL (yellow stripe-like) gene 18, Probable metal-nicotianamine transporter YSL18, Protein YELLOW STRIPE LIKE 18, yellow stripe 1-like transporter 18	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL18		1	AB190926. Q941V3.	 Biochemical character	Os01g0829900	LOC_Os01g61390.1				GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8360	YSL19	OsYSL19	YELLOW STRIP-LIKE GENE 19	rice YSL (yellow stripe-like) gene 19	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL19			AK110665	 Biochemical character						GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
8361	YSL3	OsYSL3, OsYs16	YELLOW STRIP-LIKE GENE 3	rice YSL (yellow stripe-like) gene 3, Probable metal-nicotianamine transporter YSL3, Protein YELLOW STRIPE LIKE 3, yellow stripe 1-like transporter 3	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL3		5	Q6AVD0. AB190913.	 Biochemical character	Os05g0251900	LOC_Os05g16280.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8362	YSL4	OsYSL4, OsYs17	YELLOW STRIP-LIKE GENE 4	rice YSL (yellow stripe-like) gene 4, Probable metal-nicotianamine transporter YSL4, Protein YELLOW STRIPE LIKE 4, yellow stripe 1-like transporter 4	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL4		5	Q688S6. AB190914.	 Biochemical character	Os05g0252000	LOC_Os05g16290.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0016020 - membrane		
8363	YSL5	OsYSL5, OsYs9	YELLOW STRIP-LIKE GENE 5	rice YSL (yellow stripe-like) gene 5, Probable metal-nicotianamine transporter YSL5, Protein YELLOW STRIPE LIKE 5, yellow stripe 1-like transporter 5	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL5		4	AB190915. Q7XRV1.	 Biochemical character	Os04g0390600	LOC_Os04g32060.1, LOC_Os04g32060.2				GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8364	YSL6	OsYSL6, OsYs8	YELLOW STRIP-LIKE GENE 6	rice YSL (yellow stripe-like) gene 6, Probable metal-nicotianamine transporter YSL6, Protein YELLOW STRIPE LIKE 6, yellow stripe 1-like transporter 6	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL6		4	AB190916. AB673449. Q7XRV2. AU032502, BI118727, BI809647, BM419938, BI810349.	 Biochemical character	Os04g0390500	LOC_Os04g32050.1, LOC_Os04g32050.2				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8365	YSL7	OsYSL7, OsYs4	YELLOW STRIP-LIKE GENE 7	rice YSL (yellow stripe-like) gene 7, Probable metal-nicotianamine transporter YSL7, Protein YELLOW STRIPE LIKE 7, yellow stripe 1-like transporter 7	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL7		2	AB190917. Q6ZGM7. AU182396, AU183814, C98607, C98536, BE230224, C98608, AU183815, C72032, C72649, C98535, AU165407, C98740, AU182428, C98741, BE230485. TO:0020090: zinc content trait.	 Biochemical character	Os02g0116300	LOC_Os02g02450.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8366	YSL8	OsYSL8, OsYs3	YELLOW STRIP-LIKE GENE 8	rice YSL (yellow stripe-like) gene 8, Probable metal-nicotianamine transporter YSL8, Protein YELLOW STRIPE LIKE 8, yellow stripe 1-like transporter 8	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL8		2	AB190918. Q0E4J6.	 Biochemical character	Os02g0116400	LOC_Os02g02460.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0016021 - integral to membrane		
8367	YSL9	OsYSL9, OsYs13	YELLOW STRIP-LIKE GENE 9	rice YSL (yellow stripe-like) gene 9, Probable metal-nicotianamine transporter YSL9, Protein YELLOW STRIPE LIKE 9, yellow stripe 1-like transporter 9	PROBABLE METAL-NICOTIANAMINE TRANSPORTER YSL9		4	Q7XUJ2. AB190919. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0542200	LOC_Os04g45860.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0051980 - iron-nicotianamine transmembrane transporter activity, GO:0034755 - iron ion transmembrane transport, GO:0005886 - plasma membrane, GO:0042594 - response to starvation, GO:0016021 - integral to membrane	TO:0000224 - iron sensitivity	
8368	ZFP157		ZINC FINGER PROTEIN 157		ZINC FINGER PROTEIN 157				 Other						GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8369	ZFP173		ZINC FINGER PROTEIN 173		ZINC FINGER PROTEIN 173				 Other						GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8370	ZFP176		ZINC FINGER PROTEIN 176		ZINC FINGER PROTEIN 176				 Other						GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8371	ZFP177	OsSAP9, SAP9, ZFP33	ZINC FINGER PROTEIN 177	Zinc finger A20 and AN1 domain-containing stress-associated protein 9, stress associated protein 9	ZINC FINGER PROTEIN 177		7	AY282740. Q7Y1W9. likely ortholog of AlSAP (Aeluropus littorals SAP) in rice. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0168800	LOC_Os07g07350.1, LOC_Os07g07350.2, LOC_Os07g07350.3				GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0003677 - DNA binding, GO:0009408 - response to heat, GO:0010446 - response to alkalinity, GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000481 - alkali sensitivity, TO:0000259 - heat tolerance, TO:0000164 - stress trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0001170 - seed development stage 
8372	ZFP181		ZINC FINGER PROTEIN 181		ZINC FINGER PROTEIN 181				 Other						GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8375	ZIP4	OsZIP4	ZINC TRANSPORTER 4	zinc transporter 4, Zrt-Irt-like protein 4, Zinc-regulated transporter 4, ZRT-IRT-related protein 4, ZIP transporter 4, Zinc- and iron-regulating transport-like protein 4, Zn- and Fe-regulating transport-like protein 4	ZINC TRANSPORTER 4		8	AB126089. Q6ZJ91. TO:0020090: zinc content trait. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os08g0207500	LOC_Os08g10630.1	GR:0101275			GO:0010269 - response to selenium ion, GO:0010043 - response to zinc ion, GO:0016021 - integral to membrane, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0030001 - metal ion transport, GO:0010042 - response to manganese ion, GO:0006829 - zinc ion transport, GO:0016020 - membrane, GO:0046686 - response to cadmium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0046873 - metal ion transmembrane transporter activity, GO:0008270 - zinc ion binding	TO:0000351 - zinc sensitivity, TO:0000032 - selenium sensitivity, TO:0000073 - manganese sensitivity	PO:0005417 - phloem , PO:0009005 - root , PO:0004013 - epidermal cell , PO:0009006 - shoot system 
8376	ZIP5	OsZIP5, OsZIP8, ZIP8, OsZIP9	ZINC TRANSPORTER 5	zinc transporter 5, Zrt-Irt-like protein 5, Zinc-regulated transporter 5, zinc transporter 8, Zrt-Irt-like protein 8, zinc transporter 9, Zrt-Irt-like protein 9, Zinc-regulated transporter 9, ZRT-IRT-related protein 5, ZIP transporter 5, Zinc- and iron-regulating transport-like protein 5, Zn- and Fe-regulating transport-like protein 5	ZINC TRANSPORTER 5		5	AB126087, AY281300. Q6L8G0. OsZIP8 in Yang et al. 2009. OsZIP5 (AB126087), OsZIP8 (AK070864) , OsZIP9 (AY281300) in Narayanan et al. 2007, Shao et al. 2018. GO: 0120127: response to zinc ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0472700	LOC_Os05g39560.1	GR:0101277,GR:0101284			GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0008270 - zinc ion binding, GO:0006829 - zinc ion transport, GO:0005385 - zinc ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0046873 - metal ion transmembrane transporter activity, GO:0030001 - metal ion transport, GO:0010042 - response to manganese ion, GO:0010269 - response to selenium ion	TO:0000073 - manganese sensitivity, TO:0000351 - zinc sensitivity, TO:0000032 - selenium sensitivity	
8377	ZIP6	OsZIP6	ZINC TRANSPORTER 6	zinc transporter 6, Zrt-Irt-like protein 6, Zinc-regulated transporter 6, ZRT-IRT-related protein 6, ZIP transporter 6, Zinc- and iron-regulating transport-like protein 6, Zn- and Fe-regulating transport-like protein 6	ZINC TRANSPORTER 6		5	AB126088. Q6L8F9. a potential target gene of osa-miR1432. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0164800	LOC_Os05g07210.1	GR:0101276			GO:0006829 - zinc ion transport, GO:0015691 - cadmium ion transport, GO:0046873 - metal ion transmembrane transporter activity, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0030001 - metal ion transport, GO:0005385 - zinc ion transmembrane transporter activity, GO:0042742 - defense response to bacterium, GO:0010042 - response to manganese ion, GO:0010269 - response to selenium ion, GO:0046686 - response to cadmium ion, GO:0010233 - phloem transport	TO:0000351 - zinc sensitivity, TO:0000073 - manganese sensitivity, TO:0000032 - selenium sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root , PO:0009006 - shoot system 
8378	ZIP7	OsZIP7	ZINC TRANSPORTER 7	zinc transporter 7, Zrt-Irt-like protein 7, Zinc-regulated transporter 7, ZRT-IRT-related protein 7, ZIP transporter 7, Zinc- and iron-regulating transport-like protein 7, Zn- and Fe-regulating transport-like protein 7	ZINC TRANSPORTER 7		5	AB126090. Q6L8F7. TO:0006053: zinc concentration. TO:0020090: zinc content trait. TO:0006059: cadmium content trait. GO:0120127: response to zinc ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0198400	LOC_Os05g10940.1	GR:0101278			GO:0006829 - zinc ion transport, GO:0005886 - plasma membrane, GO:0015691 - cadmium ion transport, GO:0010233 - phloem transport, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0010042 - response to manganese ion, GO:0010269 - response to selenium ion, GO:0016020 - membrane, GO:0005385 - zinc ion transmembrane transporter activity	TO:0000032 - selenium sensitivity, TO:0000351 - zinc sensitivity, TO:0000073 - manganese sensitivity	PO:0020141 - stem node , PO:0005417 - phloem , PO:0005020 - vascular bundle , PO:0005421 - parenchyma , PO:0005352 - xylem 
8381	TIP1;2	OsTIP1;2, TIP1-2, TIP1.2, TIP1	TONOPLAST INTRINSIC PROTEIN 1;2	Probable aquaporin TIP1.2, Probable aquaporin TIP1-2, Tonoplast intrinsic protein 1-2	TONOPLAST INTRINSIC PROTEIN 1;2		1	AP003627. Q94CS9.	 Biochemical character	Os01g0975900	LOC_Os01g74450.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0006810 - transport, GO:0005773 - vacuole, GO:0005215 - transporter activity		
8382	TIP3;1	OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139	TONOPLAST INTRINSIC PROTEIN 3;1	Probable aquaporin TIP3.1, Probable aquaporin TIP3-1, Tonoplast intrinsic protein 3-1, endosperm-specific gene 139	TONOPLAST INTRINSIC PROTEIN 3;1		10	AC023240. Q9FWV6. LOC_Os10g35050.	 Biochemical character	Os10g0492600	LOC_Os10g35050.1				GO:0005773 - vacuole, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0006810 - transport, GO:0005215 - transporter activity		
8383	TIP3;2	OsTIP3;2, TIP3-2, OsEnS-70	TONOPLAST INTRINSIC PROTEIN 3;2	Probable aquaporin TIP3-2, Tonoplast intrinsic protein 3-2, endosperm-specific gene 70	TONOPLAST INTRINSIC PROTEIN 3;2		4	AL663019. Q7XKI5. LOC_Os04g44570.	 Biochemical character	Os04g0527900	LOC_Os04g44570.1				GO:0005215 - transporter activity, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0005773 - vacuole		
8384	TIP4;1	OsTIP4;1, TIP4-1	TONOPLAST INTRINSIC PROTEIN 4;1	Probable aquaporin TIP4-1, Tonoplast intrinsic protein 4-1	TONOPLAST INTRINSIC PROTEIN 4;1		5	AC145396. Q75GA5. TO:0006054: arsenic concentration. TO:0006059: cadmium concentration. LOC_Os05g14240. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os05g0231700	LOC_Os05g14240.1, LOC_Os05g14240.2				GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0009566 - fertilization, GO:0005215 - transporter activity, GO:0005773 - vacuole		
8385	TIP4;2	OsTIP4;2, TIP4.2, TIP4-2	TONOPLAST INTRINSIC PROTEIN 4;2	Probable aquaporin TIP4.2, Probable aquaporin TIP4-2, Tonoplast intrinsic protein 4-2	TONOPLAST INTRINSIC PROTEIN 4;2		1	AP001550. Q9LWR0. LOC_Os01g13130. Tonoplast membrane integral protein.	 Biochemical character	Os01g0232100	LOC_Os01g13130.1				GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0005215 - transporter activity		
8386	TIP4;3	OsTIP4;3, TIP4.3, TIP4-3	TONOPLAST INTRINSIC PROTEIN 4;3	Probable aquaporin TIP4.3, Probable aquaporin TIP4-3, Tonoplast intrinsic protein 4-3	TONOPLAST INTRINSIC PROTEIN 4;3		1	AP001550. Q9LWR2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0232000	LOC_Os01g13120.1				GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0006810 - transport, GO:0005773 - vacuole, GO:0005215 - transporter activity	TO:0000259 - heat tolerance	PO:0009066 - anther 
8387	TIP5;1	OsTIP5;1	TONOPLAST INTRINSIC PROTEIN 5;1	Probable aquaporin TIP5-1, Tonoplast intrinsic protein 5-1	TONOPLAST INTRINSIC PROTEIN 5;1		4	AL663000. Q7XU31. LOC_Os04g46490.	 Biochemical character	Os04g0550800	LOC_Os04g46490.1				GO:0005773 - vacuole, GO:0005215 - transporter activity, GO:0006810 - transport, GO:0016021 - integral to membrane		
8388	TOP6A1	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1	TOPOISOMERASE 6 SUBUNIT A1	topoisomerase 6 subunit A1, sporulation protein11-1, SPORULATION11-1	TOPOISOMERASE 6 SUBUNIT A1	Osspo11-1	3	GU170363(Japonica), AJ549926(Indica). AB219537. the likely ortholog of AtSPO11-1.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0752200	LOC_Os03g54091.1				GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination, GO:0051026 - chiasma formation, GO:0000706 - meiotic DNA double-strand break processing, GO:0016853 - isomerase activity, GO:0034090 - maintenance of meiotic sister chromatid cohesion, GO:0005524 - ATP binding, GO:0045143 - homologous chromosome segregation, GO:0042138 - meiotic DNA double-strand break formation, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0051321 - meiotic cell cycle, GO:0003916 - DNA topoisomerase activity, GO:0003677 - DNA binding	TO:0000485 - sterility related trait	
8389	TOP6A2	OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B, SPO11-2	TOPOISOMERASE 6 SUBUNIT A2	topoisomerase 6 subunit A2	TOPOISOMERASE 6 SUBUNIT A2	Osspo11-2	8	AJ605583(Indica), AB219538(Japonica). the likely ortholog of AtSPO11-2.	 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os08g0156900	LOC_Os08g06050.1				GO:0003916 - DNA topoisomerase activity, GO:0045143 - homologous chromosome segregation, GO:0009414 - response to water deprivation, GO:0051321 - meiotic cell cycle, GO:0007132 - meiotic metaphase I, GO:0007129 - synapsis, GO:0009651 - response to salt stress	TO:0000485 - sterility related trait	
8390	TOP6A3	OsTOP6A3, OsSPO11-3, OsSPO11C	TOPOISOMERASE 6 SUBUNIT A3	topoisomerase 6 subunit A3	TOPOISOMERASE 6 SUBUNIT A3		3	AJ550618(Indica), AB219539(Japonica)	 Biochemical character	Os03g0284800	LOC_Os03g17610.1				GO:0003916 - DNA topoisomerase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation		
8391	TOP6B	OsTOP6B, OsSPO11-6B	TOPOISOMERASE 6 SUBUNIT B	topoisomerase 6 subunit B	TOPOISOMERASE 6 SUBUNIT B		9	AJ582989(Indica), AY371050(Japonica). HG793980. Topo6 (topoisomerase 6) in Blanera et al. 2014.	 Biochemical character	Os09g0279600	LOC_Os09g10770.1				GO:0003916 - DNA topoisomerase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation		
8392	CKX1	OsCKX1	CYTOKININ  OXIDASE/DEHYDROGENASE 1	cytokinin oxidase 1	CYTOKININ  OXIDASE/DEHYDROGENASE 1		1	Q0JQ12. BGIOSGA002233. GO:1901698: response to nitrogen compound. GO:1902347: response to strigolactone.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0187600	LOC_Os01g09260.1				GO:0005615 - extracellular space, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0009735 - response to cytokinin stimulus, GO:0009725 - response to hormone stimulus, GO:0019139 - cytokinin dehydrogenase activity, GO:0009733 - response to auxin stimulus, GO:0009690 - cytokinin metabolic process, GO:0050660 - FAD binding, GO:0042594 - response to starvation	TO:0002660 - cytokinin content, TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000401 - plant growth hormone sensitivity	
8393	CKX3	OsCKX3, ckx3	CYTOKININ OXIDASE/DEHYDROGENASE 3	Putative cytokinin oxidase 3, cytokinin oxidase 3	CYTOKININ OXIDASE/DEHYDROGENASE 3		10	Q8LNV6.	 Biochemical character	Os10g0483500	LOC_Os10g34230.1	GR:0020052			GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0009690 - cytokinin metabolic process, GO:0050660 - FAD binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0016491 - oxidoreductase activity, GO:0019139 - cytokinin dehydrogenase activity, GO:0032940 - secretion by cell, GO:0022900 - electron transport chain, GO:0009735 - response to cytokinin stimulus, GO:0005615 - extracellular space	TO:0000167 - cytokinin sensitivity	
8394	CKX4	OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2	CYTOKININ OXIDASE/DEHYDROGENASE 4	Putative cytokinin dehydrogenase 4, cytokinin oxidase 4	CYTOKININ OXIDASE/DEHYDROGENASE 4		1	BF889461. Q5JLP4. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity. GO:1902347: response to strigolactone.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0940000	LOC_Os01g71310.1	GR:0020053			GO:0032940 - secretion by cell, GO:0048364 - root development, GO:0051607 - defense response to virus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0009753 - response to jasmonic acid stimulus, GO:0016491 - oxidoreductase activity, GO:0022900 - electron transport chain, GO:0042594 - response to starvation, GO:0009725 - response to hormone stimulus, GO:0009736 - cytokinin mediated signaling, GO:0005615 - extracellular space, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0019139 - cytokinin dehydrogenase activity, GO:0050660 - FAD binding, GO:0009690 - cytokinin metabolic process, GO:0009734 - auxin mediated signaling pathway	TO:0000401 - plant growth hormone sensitivity, TO:0002685 - crown root number, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0025034 - leaf , PO:0009005 - root , PO:0007520 - root development stage 
8395	CKX5	OsCKX5, ckx5	CYTOKININ OXIDASE/DEHYDROGENASE 5	Putative cytokinin oxidase 5, cytokinin oxidase 5	CYTOKININ OXIDASE/DEHYDROGENASE 5		1	Q5ZAY9. GO:1901698: response to nitrogen compound. GO:1902347: response to strigolactone.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0775400	LOC_Os01g56810.2, LOC_Os01g56810.1	GR:0020054			GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0009735 - response to cytokinin stimulus, GO:0019139 - cytokinin dehydrogenase activity, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0032940 - secretion by cell, GO:0009694 - jasmonic acid metabolic process, GO:0009823 - cytokinin catabolic process, GO:0042594 - response to starvation, GO:0009725 - response to hormone stimulus, GO:0022900 - electron transport chain, GO:0016491 - oxidoreductase activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0050660 - FAD binding, GO:0009536 - plastid	TO:0000167 - cytokinin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0002660 - cytokinin content, TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity	
8396	CKX6	OsCKX6	CYTOKININ  OXIDASE/DEHYDROGENASE 6	cytokinin oxidase 6	CYTOKININ  OXIDASE/DEHYDROGENASE 6		2	LOC_Os02g12770. Q6YW51.	 Biochemical character	Os02g0220000					GO:0050660 - FAD binding, GO:0009690 - cytokinin metabolic process, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0019139 - cytokinin dehydrogenase activity		
8397	CKX7	OsCKX7	CYTOKININ  OXIDASE/DEHYDROGENASE 7	cytokinin oxidase 7	CYTOKININ  OXIDASE/DEHYDROGENASE 7		2	LOC_Os02g12780. Q6YW50.	 Biochemical character	Os02g0220100	LOC_Os02g12780.1				GO:0009690 - cytokinin metabolic process, GO:0019139 - cytokinin dehydrogenase activity, GO:0050660 - FAD binding, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space		
8398	CKX8	OsCKX8	CYTOKININ  OXIDASE/DEHYDROGENASE 8	cytokinin oxidase 8	CYTOKININ  OXIDASE/DEHYDROGENASE 8		4	A3AVP1.	 Biochemical character	Os04g0523500	LOC_Os04g44230.1				GO:0009690 - cytokinin metabolic process, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0009735 - response to cytokinin stimulus, GO:0019139 - cytokinin dehydrogenase activity, GO:0050660 - FAD binding	TO:0000167 - cytokinin sensitivity	
8399	CKX9	OsCKX9	CYTOKININ  OXIDASE/DEHYDROGENASE 9	cytokinin oxidase 9	CYTOKININ  OXIDASE/DEHYDROGENASE 9	osckx9	5	Q75K78. GO:1901698: response to nitrogen compound. GO:1902347: response to strigolactone. GO:0090548: response to nitrate starvation. TO:0020098: nitrate sensitivity.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0374200	LOC_Os05g31040.1				GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0005615 - extracellular space, GO:0050660 - FAD binding, GO:0009725 - response to hormone stimulus, GO:0009690 - cytokinin metabolic process, GO:0019139 - cytokinin dehydrogenase activity, GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0005829 - cytosol, GO:0009733 - response to auxin stimulus, GO:0009823 - cytokinin catabolic process, GO:0009735 - response to cytokinin stimulus	TO:0000547 - primary branch number, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000447 - filled grain number, TO:0000011 - nitrogen sensitivity, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000582 - inflorescence number, TO:0000040 - panicle length	
8400	CKX10	OsCKX10	CYTOKININ  OXIDASE/DEHYDROGENASE 10	cytokinin oxidase 10	CYTOKININ  OXIDASE/DEHYDROGENASE 10		6	Q5Z620.	 Biochemical character	Os06g0572300	LOC_Os06g37500.1				GO:0005615 - extracellular space, GO:0050660 - FAD binding, GO:0009690 - cytokinin metabolic process, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0019139 - cytokinin dehydrogenase activity		
8401	CKX11	OsCKX11	CYTOKININ  OXIDASE/DEHYDROGENASE 11	cytokinin oxidase 11	CYTOKININ  OXIDASE/DEHYDROGENASE 11		8	Q6Z955.	 Biochemical character	Os08g0460600	LOC_Os08g35860.1				GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0009690 - cytokinin metabolic process, GO:0050660 - FAD binding, GO:0005615 - extracellular space, GO:0009735 - response to cytokinin stimulus, GO:0019139 - cytokinin dehydrogenase activity	TO:0000167 - cytokinin sensitivity	
8402	OSC4	Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1, C4	ANTHER SPECIFIC PROTEIN 4	type C non-specific lipid transfer protein 1, non-specific lipid transfer protein c1, lipid transfer protein c1	ANTHER SPECIFIC PROTEIN 4		8	D10982, D21159. BAD09233.	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0546300	LOC_Os08g43290.1				GO:0048653 - anther development, GO:0009555 - pollen development		PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
8403	C6	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6	ANTHER SPECIFIC PROTEIN 6	GPI-anchored non-specific lipid transfer protein 25, type G nsLTP 25, type G non-specific lipid transfer protein 25	ANTHER SPECIFIC PROTEIN 6		11	D10983, D21160. D29739. OsC6 function appears toextend to anther cuticle formation (Zhang et al., 2010).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os11g0582500	LOC_Os11g37280.1				GO:0010584 - pollen exine formation, GO:0009266 - response to temperature stimulus, GO:0009555 - pollen development, GO:0009408 - response to heat, GO:0008233 - peptidase activity, GO:0006869 - lipid transport	TO:0000432 - temperature response trait, TO:0000259 - heat tolerance	PO:0009066 - anther 
8404	RBLS2	ASR1, OsAsr1, OsASR3, ASR3, Asr3, OsRBLS2	RESISTANCE TO BACTERIAL LEAF STREAK 2	"Abiotic Stress Responsive 3, \"ABA-, stress and ripening-induced protein 3\", \"abscisic acid-, stress- and ripening (ASR) gene 3\", resistance to bacterial leaf streak 2"	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN		2	OsASR3 in Philippe et al. 2010, Joo et al. 2013, Perez-Diaz et al. 2013, Li et al. 2016, Jiang et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0543000	LOC_Os02g33820.1				GO:0006950 - response to stress, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000255 - sheath blight disease resistance, TO:0000153 - relative yield, TO:0000203 - bacterial leaf streak disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
8405	ASR2	OsAsr2, OsASR4, ASR4, OsASR6, ASR6	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 2 PROTEIN	"Abiotic Stress Responsive 4, \"ABA-, stress and ripening-induced protein 6\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 2 PROTEIN		1	OsASR4 in Joo et al. 2013. OsASR6 in Philippe et al. 2010 and Perez-Diaz et al. 2013, Guo et al. 2022. ASR transcription factor. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0963600	LOC_Os01g73250.1, LOC_Os01g73250.2				GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0009863 - salicylic acid mediated signaling pathway, GO:0045454 - cell redox homeostasis, GO:0050849 - negative regulation of calcium-mediated signaling, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance	
8406	ASR3	Asr3, OsASR5, OsASR1, Asr1	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 3 PROTEIN	"Abiotic Stress Responsive 5, \"ABA-, stress and ripening-induced protein 1\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 3 PROTEIN		1	OsASR5 in Joo et al. 2013. OsASR1 in Perez-Diaz et al. 2013 and Philippe et al. 2010.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0959100	LOC_Os01g72900.1				GO:0010288 - response to lead ion, GO:0046689 - response to mercury ion, GO:0006950 - response to stress, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion	TO:0000034 - chromium sensitivity, TO:0000477 - panicle blast disease resistance	
8407	ASR4	Asr4, OsASR6, OsASR2, Asr2, OsASR1, ASR1	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN	"Abiotic Stress Responsive 6, \"ABA-, stress and ripening-induced protein 2\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN		1	OsASR6 in Joo et al. 2013. OsASR2 in Philippe et al. 2010 and Perez-Diaz et al. 2013. OsASR1 in Jiang et al. 2022. GO:1902584: positive regulation of response to water deprivation. GO:1901002: positive regulation of response to salt stress. GO:2000377: regulation of reactive oxygen species metabolic process.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0959200	LOC_Os01g72910.1				GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009635 - response to herbicide, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0010188 - response to microbial phytotoxin	TO:0000085 - leaf rolling, TO:0000276 - drought tolerance, TO:0000058 - herbicide sensitivity, TO:0000477 - panicle blast disease resistance, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance	
8408	ASR5	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 5 PROTEIN	"Abiotic Stress Responsive 1, \"ABA-, stress and ripening-induced protein 5\", \"abscisic acid-, stress- and ripening (ASR) gene 5\", \"abscisic acid, stress and ripening 2\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 5 PROTEIN	osasr5	11	LOC_Os11g06720. AF039573. EF576160. OsASR1 in Joo et al. 2013. OsASR2 in Li et al. 2017. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os11g0167800	LOC_Os11g06720.1				GO:0010119 - regulation of stomatal movement, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0006950 - response to stress, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010044 - response to aluminum ion, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000522 - stomatal conductance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000173 - ethylene sensitivity, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0000354 - aluminum sensitivity	
8409	ASR6	Asr6	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 6 PROTEIN		ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 6 PROTEIN		4	Os04g0423700	 Tolerance and resistance - Stress tolerance	Os04g0423700	LOC_Os04g34620.1				GO:0006950 - response to stress		
8410	ATP6	atp6, OsPOX1, prx3, POX1	ATPASE SUBUNIT 6	peroxidase 1, class III peroxidase 3	ATPASE SUBUNIT 6		1	dicistronic gene atp6-orf79, Rf1 promotes processing of atp6-orf79 transcript. BN000532.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0263300	LOC_Os01g15830.1				GO:0004601 - peroxidase activity, GO:0010238 - response to proline, GO:0051707 - response to other organism, GO:0042545 - cell wall modification, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0009414 - response to water deprivation, GO:0016887 - ATPase activity, GO:0009725 - response to hormone stimulus, GO:0009409 - response to cold, GO:0046872 - metal ion binding, GO:0005618 - cell wall	TO:0000034 - chromium sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content	
8411	OSBZ8	OsBZ8, OsbZIP05, OsGBF1, GBF1, OsGBF1a, OsGBF1b	BZIP PROTEIN 8	bZIP transcription factor 05, G-box-binding factor 1	BZIP PROTEIN 8		1	U42208. AY606941. JZ903929. a salt-stress inducible bZIP protein.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0658900	LOC_Os01g46970.2, LOC_Os01g46970.1				GO:0005634 - nucleus, GO:0046983 - protein dimerization activity, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription	TO:0006001 - salt tolerance	
8412	RAB16B	rab21, OsLEA28, OsRAB16D, OsRab16d, Rab16d, OsRAB16b, XERO1, OsXERO1, OsRD22, RD22	RESPONSIVE TO ABA GENE 16B	Dehydrin Rab16B, RAB(RESPONSIVE TO ABA) GENE 16B, late embryogenesis abundant protein 28	DEHYDRIN RAB16B	rab16Bj	11	Y00842. Q2R4Z5(japonica), A2ZDX8(indica). AF333275 (promoter sequence). EF444533. OsRAB16D in Nakashima et al. 2013, Huang et al. 2018, Yoo et al. 2023. One of three hub genes in DEGs identified among AG (Anaerobic germination) stress, cold stress and conbined AG and cold stresses (Thapa et al. 2023).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0454200	LOC_Os11g26780.1				GO:0009738 - abscisic acid mediated signaling, GO:0009413 - response to flooding, GO:0006950 - response to stress, GO:0001666 - response to hypoxia, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0034059 - response to anoxia, GO:0009415 - response to water, GO:0042742 - defense response to bacterium	TO:0000114 - flooding related trait, TO:0000237 - water stress trait, TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000315 - bacterial disease resistance	
8413	RAB16C	rab21, OsLEA27, rab16C, OsRAB16C, DHD	RESPONSIVE TO ABA GENE 16C	RAB(RESPONSIVE TO ABA) GENE 16C, Dehydrin Rab16C, late embryogenesis abundant protein 27	DEHYDRIN RAB16C 		11	Q2R4Z7(japonica), A2ZDX6(indica). RAB16A in Hu et al. 2017. DHD (dehydrin) in Pandey et al. 2021.	 Tolerance and resistance - Stress tolerance	Os11g0454000	LOC_Os11g26760.1				GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0009415 - response to water, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000237 - water stress trait, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000507 - osmotic adjustment capacity, TO:0000615 - abscisic acid sensitivity	
8414	RAB16D	rab21, OsLEA26, Rab16D, OsRab16	RESPONSIVE TO ABA GENE 16D	RAB(RESPONSIVE TO ABA) GENE 16D, Dehydrin Rab16D, late embryogenesis abundant protein 26	DEHYDRIN RAB16D 		11	Q2R4Z8(japonica), A2ZDX4(indica).	 Tolerance and resistance - Stress tolerance	Os11g0453900	LOC_Os11g26750.1				GO:0019722 - calcium-mediated signaling, GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009415 - response to water, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000237 - water stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
8416	GPS1	gps1	GAMETOPHYTIC POLLEN STERILITY 1						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8417	GPS10	gps10	GAMETOPHYTIC POLLEN STERILITY 10						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8418	GPS11	gps11	GAMETOPHYTIC POLLEN STERILITY 11						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8419	GPS12	gps12	GAMETOPHYTIC POLLEN STERILITY 12						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8420	GPS2	gps2	GAMETOPHYTIC POLLEN STERILITY 2						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8421	GPS3	gps3	GAMETOPHYTIC POLLEN STERILITY 3						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8422	GPS4	gps4	GAMETOPHYTIC POLLEN STERILITY 4						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8423	GPS5	gps5	GAMETOPHYTIC POLLEN STERILITY 5						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8424	GPS6	gps6	GAMETOPHYTIC POLLEN STERILITY 6						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8425	GPS7	gps7	GAMETOPHYTIC POLLEN STERILITY 7						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8426	GPS8	gps8	GAMETOPHYTIC POLLEN STERILITY 8						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8427	GPS9	gps9	GAMETOPHYTIC POLLEN STERILITY 9						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8428	PAIR2	Pair2, OsPAIR2, OsASY1	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2	Homologous pairing aberration in rice meiosis 2	HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2	pair2	9	ortholog of Arabidopsis ASY1. AB109238. PO:0020047; microsporocyte ; PO:0000431; megasporocyte. GRO:0007147; 4.1-panicle initiation stage.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os09g0506800	LOC_Os09g32930.3, LOC_Os09g32930.1	GR:0100120			GO:0007129 - synapsis, GO:0000228 - nuclear chromosome, GO:0000238 - zygotene, GO:0005634 - nucleus, GO:0000237 - leptotene, GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis	TO:0000729 - meiotic cell cycle trait	PO:0000431 - megasporocyte , PO:0020047 - microsporocyte 
8429	RAG	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1, rf3	RICE AGAMOUS	MADS box gene3, MADS-box transcription factor 3, Protein AGAMOUS-like, fertility restoration 3	PROTEIN AGAMOUS-LIKE	mads3-1, mads3-2, mads3-3, mads3-4, osmads3, osmads3-2, osmads3-3	1	Lodicules are homeotically transformed into stamens. Q40704. floral homeotic C-class gene. L37528. a rice homolog of AGAMOUS. KC611053-KC611064 (O. sativa and wild rice species, partial cds).	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle	Os01g0201700	LOC_Os01g10504.3, LOC_Os01g10504.2, LOC_Os01g10504.1				GO:0009908 - flower development, GO:0003677 - DNA binding, GO:0048653 - anther development, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0030154 - cell differentiation, GO:0043565 - sequence-specific DNA binding, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity	TO:0006009 - lodicule anatomy and morphology trait, TO:0000622 - flower development trait, TO:0006023 - lodicule development trait, TO:0000215 - stamen anatomy and morphology trait, TO:0000621 - inflorescence development trait	PO:0009036 - lodicule , PO:0001049 - lodicule development stage , PO:0007615 - flower development stage , PO:0001004 - anther development stage , PO:0001083 - inflorescence development stage , PO:0009029 - stamen 
8430	RAP1A	OsMADS15, FDRMADS3, RMADS215, MADS15, DEP	RICE APETALA 1A	MADS-box transcription factor 15, Protein APETALA1-like A, degenerative palea, MADS box gene15	PROTEIN APETALA1-LIKE A	dep, Osmads15	7	AP1-like MADS box protein. Q6Q9I2. AB003325, AF058698. a rice APETALA1 ortholog (an ortholog of Arabidopsis AP1).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Reproductive organ,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0108900	LOC_Os07g01820.6, LOC_Os07g01820.5, LOC_Os07g01820.4, LOC_Os07g01820.1, LOC_Os07g01820.2, LOC_Os07g01820.3				GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0003006 - reproductive developmental process, GO:0005515 - protein binding		PO:0020094 - plant egg cell 
8432	REG1		RICE EMBRYO GLOBULIN-1 PROTEIN		RICE EMBRYO GLOBULIN-1 PROTEIN				 Seed - Morphological traits - Embryo						GO:0009790 - embryonic development, GO:0020037 - heme binding, GO:0015671 - oxygen transport, GO:0019825 - oxygen binding		
8433	REG2	REG-2	RICE EMBRYO GLOBULIN-2 PROTEIN		RICE EMBRYO GLOBULIN-2 PROTEIN			rice homolog of maize GLB2 globulin. AY427562 (promoter).	 Seed - Morphological traits - Embryo,  Seed - Physiological traits - Storage substances						GO:0019825 - oxygen binding, GO:0015671 - oxygen transport, GO:0009790 - embryonic development, GO:0020037 - heme binding	TO:0002653 - endosperm storage protein content	
8434	SPS1	sps1	SPOROPHYTIC POLLEN STERILITY 1						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8435	SPS10	sps10	SPOROPHYTIC POLLEN STERILITY 10						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8436	SPS11	sps11	SPOROPHYTIC POLLEN STERILITY 11						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8437	SPS12	sps12	SPOROPHYTIC POLLEN STERILITY 12				7		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8438	SPS2	sps2	SPOROPHYTIC POLLEN STERILITY 2						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8439	SPS3	sps3	SPOROPHYTIC POLLEN STERILITY 3						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8440	SPS4	sps4	SPOROPHYTIC POLLEN STERILITY 4						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8441	SPS5	sps5	SPOROPHYTIC POLLEN STERILITY 5						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8442	SPS6	sps6	SPOROPHYTIC POLLEN STERILITY 6				3		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8443	SPS7	sps7	SPOROPHYTIC POLLEN STERILITY 7						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8444	SPS8	sps8	SPOROPHYTIC POLLEN STERILITY 8						 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8445	SPS9	sps9	SPOROPHYTIC POLLEN STERILITY 9				9		 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0007275 - multicellular organismal development		
8446	LF1	HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1, OsLF1, OsHDZ9, OsHDZIP9, HDZ9, HDZIP9	LATERAL FLORET 1	rice homeobox gene 10, Homeobox-leucine zipper protein HOX10, Homeodomain transcription factor HOX10, HD-ZIP protein HOX10, HOMEODOMAIN CONTAINING PROTEIN 1, Homeodomain transcription factor HOX10, lateral florets 1, homeodomain-leucine zipper transcription factor 9, transcription factor 9	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX10	lf1	3	EF555531. A2XBL9 (indica), Q6TAQ6 (japonica).  leucin zipper gene family. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:0090708: specification of plant organ axis polarity. PO:0099402: plant organ development. TO:0020106: Indole-3-acetic acid content. PO:0030123: panicle inflorescence. TO:0006064: rolled leaf. TO:1000023: lemma morphology trait.	 Vegetative organ - Leaf,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0109400	LOC_Os03g01890.2, LOC_Os03g01890.1				GO:0001708 - cell fate specification, GO:0043565 - sequence-specific DNA binding, GO:0048366 - leaf development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010582 - floral meristem determinacy, GO:0006350 - transcription, GO:0009955 - adaxial/abaxial pattern formation, GO:0009908 - flower development, GO:0009753 - response to jasmonic acid stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000614 - lemma shape, TO:0000655 - leaf development trait, TO:0000370 - leaf width, TO:0002672 - auxin content, TO:0000657 - spikelet anatomy and morphology trait, TO:0000172 - jasmonic acid sensitivity	PO:0000017 - vascular leaf primordium , PO:0020148 - shoot apical meristem , PO:0006022 - bundle sheath extension , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009037 - lemma , PO:0001050 - leaf development stage , PO:0025034 - leaf , PO:0009047 - stem , PO:0005352 - xylem , PO:0009005 - root 
8447	HOX11	Oshox11, OsHox11, OsHDZ30, OsHDZIP30, HDZ30, HDZIP30	HOMEOBOX GENE 11	rice homeobox gene 11, Homeobox-leucine zipper protein HOX11, Homeodomain transcription factor HOX11, HD-ZIP protein HOX11, homeodomain-leucine zipper transcription factor 30, OsHDZIP transcription factor 30	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX11		9	EF555532, AY559046, CI309350, CI258099. A2Z1U1(indica), Q67UE2(japonica).	 Other,  Tolerance and resistance - Stress tolerance	Os09g0447000	LOC_Os09g27450.1				GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance	
8448	HOX12	Oshox12, OsHox12	HOMEOBOX GENE 12	rice homeobox gene 12, Homeobox-leucine zipper protein HOX12, Homeodomain transcription factor HOX12, HD-ZIP protein HOX12	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX12		3	EF555533. A2XDK5(indica), Q10QF2(japonica). GO:0099402: plant organ development.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Other,  Reproductive organ - panicle	Os03g0198600	LOC_Os03g10210.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009685 - gibberellin metabolic process, GO:0010336 - gibberellic acid homeostasis, GO:0006350 - transcription, GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0006355 - regulation of transcription, DNA-dependent, GO:0030912 - response to deep water	TO:0002675 - gibberellic acid content, TO:0000524 - submergence tolerance, TO:0001002 - inflorescence exsertion	PO:0007057 - 0 seed germination stage , PO:0009049 - inflorescence , PO:0007045 - coleoptile emergence stage 
8449	HOX13	Oshox13, OsHox13, OsHDZ11, OsHDZIP11, HDZ11, HDZIP11	HOMEOBOX GENE 13	rice homeobox gene 13, Homeobox-leucine zipper protein HOX13, Homeodomain transcription factor HOX13, HD-ZIP protein HOX13, homeodomain-leucine zipper transcription factor 11, OsHDZIP transcription factor 11	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX13		3	EF555534. A2XDD6(indica), Q10QP3(japonica). PO:0030123: panicle inflorescence. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0188900	LOC_Os03g08960.1				GO:0009536 - plastid, GO:0019740 - nitrogen utilization, GO:0009753 - response to jasmonic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0006350 - transcription, GO:0009651 - response to salt stress	TO:0000011 - nitrogen sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000153 - relative yield, TO:0000524 - submergence tolerance	PO:0009030 - carpel , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009047 - stem , PO:0009005 - root 
8450	HOX14	Oshox14, OsHox14	HOMEOBOX GENE 14	rice homeobox gene 14, Homeobox-leucine zipper protein HOX14, Homeodomain transcription factor HOX14, HD-ZIP protein HOX14	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX14	oshox14	7	EF555535, AY559047. A2YN17(indica), Q7XI85(japonica).  TO:0000847: panicle inflorescence morphology trait. 	 Reproductive organ - Panicle, Mode of branching,  Other,  Reproductive organ - panicle	Os07g0581700	LOC_Os07g39320.1				GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000456 - spikelet number, TO:0000050 - inflorescence branching, TO:0000547 - primary branch number	PO:0006327 - spikelet meristem , PO:0009105 - inflorescence branch meristem , PO:0000230 - inflorescence meristem , PO:0000229 - flower meristem 
8451	HOX15	Oshox15, OsHox15, OsHDZ34, OsHDZIP34, HDZ34, HDZIP34	HOMEOBOX GENE 15	rice homeobox gene 15, Homeobox-leucine zipper protein HOX15, Homeodomain transcription factor HOX15, HD-ZIP protein HOX15, homeodomain-leucine zipper transcription factor 34, OsHDZIP transcription factor 34	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX15		10	EF555536, AK060176, CK069199, BF430484. A2Z4C4(indica), Q7G737(japonica).	 Other	Os10g0103700	LOC_Os10g01470.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003700 - transcription factor activity		PO:0009089 - endosperm , PO:0009049 - inflorescence , PO:0009005 - root , PO:0025034 - leaf 
8452	HOX16	Oshox16, OsHox16, OsHDZ8, OsHDZIP8, HDZ8, HDZIP8	HOMEOBOX GENE 16	rice homeobox gene 16, Homeobox-leucine zipper protein HOX16, Homeodomain transcription factor HOX16, HD-ZIP protein HOX16, homeodomain-leucine zipper transcription factor 8, OsHDZIP transcription factor 8	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX16		2	EF555537, AY559045. A2X980(indica), Q6YWR4(jponiac).	 Tolerance and resistance - Stress tolerance,  Other	Os02g0729700	LOC_Os02g49700.3, LOC_Os02g49700.1, LOC_Os02g49700.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009408 - response to heat, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000259 - heat tolerance	
8453	HOX17	Oshox17, OsHox17, OsHDZ15, OsHDZIP15, HDZ15, HDZIP15	HOMEOBOX GENE 17	rice homeobox gene 17, Homeobox-leucine zipper protein HOX17, Homeodomain transcription factor HOX17, HD-ZIP protein HOX17, homeodomain-leucine zipper transcription factor 15, OsHDZIP transcription factor 15	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX17		4	EF555538, AK122006. Q01I23(indica), Q0JB92(japonica). GO:0060992: response to fungicide.	 Other,  Tolerance and resistance - Insect resistance	Os04g0548700	LOC_Os04g46350.1				GO:0002213 - defense response to insect, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance	
8454	HOX18	Oshox18, OsHox18, OsHDZ21, OsHDZIP21, HDZ21, HDZIP21	HOMEOBOX GENE 18	rice homeobox gene 18, Homeobox-leucine zipper protein HOX18, Homeodomain transcription factor HOX18, HD-ZIP protein HOX18, homeodomain-leucine zipper transcription factor 21, OsHDZIP transcription factor 21	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX18		6	EF555539. A2YGL9(indica), Q5Z6F6(japonica).	 Other	Os06g0698200	LOC_Os06g48290.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003700 - transcription factor activity	TO:0002677 - brassinosteroid sensitivity	
8455	HOX19	Oshox19, OsHox19, OsHDZ12, OsHDZIP12, HDZ12, HDZIP12	HOMEOBOX GENE 19	rice homeobox gene 19, Homeobox-leucine zipper protein HOX19, Homeodomain transcription factor HOX19, HD-ZIP protein HOX19, homeodomain-leucine zipper transcription factor 12, OsHDZIP transcription factor 12	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX19		3	EF555540, AY554031, CK069199. A2XE76(indica), Q8GRL4(japonica).	 Tolerance and resistance - Stress tolerance,  Other	Os03g0231000	LOC_Os03g12860.1				GO:0009741 - response to brassinosteroid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0006350 - transcription	TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance	
8456	HOX2	Oshox2, OsHox2, OsHDZ19, OsHDZIP19, HDZ19, HDZIP19	HOMEOBOX GENE 2	rice homeobox gene 2, Homeobox-leucine zipper protein HOX2, Homeodomain transcription factor HOX2, HD-ZIP protein HOX2, homeodomain-leucine zipper transcription factor 19, OsHDZIP transcription factor 19	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX2		6	EF555522, AF145726. Q5VPE3(japonica), Q84U86(indica).	 Tolerance and resistance - Stress tolerance,  Other	Os06g0140700	LOC_Os06g04870.1				GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009753 - response to jasmonic acid stimulus, GO:0030912 - response to deep water, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000524 - submergence tolerance	
8457	HOX20	Oshox20, OsHox20, OsHDZ28, OsHDZIP28, HDZ28, HDZIP28	HOMEOBOX GENE 20	rice homeobox gene 20, Homeobox-leucine zipper protein HOX20, Homeodomain transcription factor HOX20, HD-ZIP protein HOX20, homeodomain-leucine zipper transcription factor 28, OsHDZIP transcription factor 28	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX20		8	EF555543, AK068244. A2YWC0(indica), Q6Z248(japonica). PO:0030123: panicle inflorescence. GO:0060992: response to fungicide.	 Tolerance and resistance - Insect resistance,  Other,  Tolerance and resistance - Stress tolerance	Os08g0481400	LOC_Os08g37580.1				GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009009 - plant embryo 
8458	HOX21	Oshox21, OsHox21, OsHDZ10, OsHDZIP10, HDZ10, HDZIP10	HOMEOBOX GENE 21	rice homeobox gene 21, Homeobox-leucine zipper protein HOX21, Homeodomain transcription factor HOX21, HD-ZIP protein HOX21, homeodomain-leucine zipper transcription factor 10, OsHDZIP transcription factor 10	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX21		3	EF555544, AY554028, BP184690. A2XD08(indica), Q8S7W9(japonica). GO:0060992: response to fungicide.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Insect resistance	Os03g0170600	LOC_Os03g07450.1				GO:0005634 - nucleus, GO:0002213 - defense response to insect, GO:0009651 - response to salt stress, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0043565 - sequence-specific DNA binding	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000261 - insect damage resistance, TO:0000403 - leaf-folder resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000454 - stem borer resistance	
8459	HOX22	Oshox22, OsHox22, OsHDZ14, OsHDZIP14, HDZ14, HDZIP14	HOMEOBOX GENE 22	rice homeobox gene 22, Homeobox-leucine zipper protein HOX22, Homeodomain transcription factor HOX22, HD-ZIP protein HOX22, homeodomain-leucine zipper transcription factor 14, OsHDZIP transcription factor 14	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX22		4	EF555545, AY224440. Q01IK0(indica), Q7XUJ5(japonica). GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0541700	LOC_Os04g45810.1				GO:0006970 - response to osmotic stress, GO:0006350 - transcription, GO:0009628 - response to abiotic stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0019740 - nitrogen utilization, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000166 - gibberellic acid sensitivity, TO:0000153 - relative yield, TO:0000011 - nitrogen sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
8460	HOX23	Oshox23, OsHox23, OsHDZ36, OsHDZIP36, HDZ36, HDZIP36	HOMEOBOX GENE 23	rice homeobox gene 23, Homeobox-leucine zipper protein HOX23, Homeodomain transcription factor HOX23, HD-ZIP protein HOX23, homeodomain-leucine zipper transcription factor 36, OsHDZIP transcription factor 36	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX23		10	EU085431, CT837749, CT851849. Q94GL5(japonica), A2Z734(indica).	 Tolerance and resistance - Stress tolerance,  Other	Os10g0404900	LOC_Os10g26500.1				GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance	
8461	HOX24	Oshox24, OsHox24, OsSLI1, OsHDZ6, OsHDZIP6, HDZ6, HDZIP6	HOMEOBOX GENE 24	rice homeobox gene 24, Homeobox-leucine zipper protein HOX24, Homeodomain transcription factor HOX24, HD-ZIP protein HOX24, stress largely induced 1, homeodomain-leucine zipper transcription factor 6, OsHDZIP transcription factor 6	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX24		2	EF555546, AK063685. A2X7U1(indica), Q6H6S3(japonica). GEO accession: GSE144419 (Genome-wide mapping of OsHOX24-binding sites in rice). TO:0000996: flag leaf area.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os02g0649300	LOC_Os02g43330.1				GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0009628 - response to abiotic stimulus, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010118 - stomatal movement, GO:0006950 - response to stress	TO:0000152 - panicle number, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000346 - tiller number, TO:0000516 - relative root length, TO:0000095 - osmotic response sensitivity, TO:0000168 - abiotic stress trait, TO:0000507 - osmotic adjustment capacity, TO:0000259 - heat tolerance, TO:0001016 - relative chlorophyll content, TO:0000615 - abscisic acid sensitivity	
8462	HOX25	Oshox25, OsHox25, OsHDZ29, OsHDZIP29, HDZ29, HDZIP29	HOMEOBOX GENE 25	rice homeobox gene 25, Homeobox-leucine zipper protein HOX25, Homeodomain transcription factor HOX25, HD-ZIP protein HOX25, homeodomain-leucine zipper transcription factor 29, OsHDZIP transcription factor 29	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX25		9	EF555547, CB678360, CT862400. A2Z0Q0(indica), A3BYC1(japonica).	 Other	Os09g0379600	LOC_Os09g21180.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent		
8463	HOX26	Oshox26, OsHDZ4, OsHDZIP4, HDZ4, HDZIP4	HOMEOBOX GENE 26	rice homeobox gene 26, Putative homeobox-leucine zipper protein HOX26, Homeodomain transcription factor HOX26, HD-ZIP protein HOX26, homeodomain-leucine zipper transcription factor 4, OsHDZIP transcription factor 4	PUTATIVE HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX26		2	Q67UX6. GO:0060992: response to fungicide.	 Other,  Tolerance and resistance - Insect resistance	Os02g0149900	LOC_Os02g05640.1				GO:0009536 - plastid, GO:0043565 - sequence-specific DNA binding, GO:0002213 - defense response to insect, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000454 - stem borer resistance, TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance, TO:0000403 - leaf-folder resistance	
8464	HOX27	Oshox27, OsHox27, OsHDZ27, OsHDZIP27, HDZ27, HDZIP27	HOMEOBOX GENE 27	rice homeobox gene 27, Homeobox-leucine zipper protein HOX27, Homeodomain transcription factor HOX27, HD-ZIP protein HOX27, homeodomain-leucine zipper transcription factor 27, OsHDZIP transcription factor 27	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX27		8	EF555548, AK241196. A2YW03(indica), Q6YPD0(japonica). PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0465000	LOC_Os08g36220.1				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity	PO:0009005 - root , PO:0009047 - stem , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009030 - carpel , PO:0025034 - leaf 
8465	HOX28	Oshox28, OsHox28, OsHDZ18, OsHDZIP18, HDZ18, HDZIP18	HOMEOBOX GENE 28	rice homeobox gene 28, Homeobox-leucine zipper protein HOX28, Homeodomain transcription factor HOX28, HD-ZIP protein HOX28, homeodomain-leucine zipper transcription factor 18, OsHDZIP transcription factor 18	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX28		6	EF555549, AK059116. A2Y931(indica), Q5VPE5(japonica). PO:0030123: panicle inflorescence.	 Other,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os06g0140400	LOC_Os06g04850.1				GO:0010252 - auxin homeostasis, GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0043565 - sequence-specific DNA binding, GO:0009741 - response to brassinosteroid stimulus, GO:0003700 - transcription factor activity, GO:0010600 - regulation of auxin biosynthetic process, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009959 - negative gravitropism, GO:0009651 - response to salt stress	TO:0000567 - tiller angle, TO:0002672 - auxin content, TO:0002693 - gravity response trait, TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000524 - submergence tolerance	PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009009 - plant embryo , PO:0009005 - root , PO:0025034 - leaf , PO:0009047 - stem 
8466	HOX29	Oshox29, OsHox29, OSHB5, HB5	HOMEOBOX GENE 29	rice homeobox gene 29, Homeobox-leucine zipper protein HOX29, Homeodomain transcription factor HOX29, HD-ZIP protein HOX29, HOMEODOMAIN CONTAINING PROTEIN 5	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX29		1	EF555550, CT845867, CB654749. AB374207. A2WLR5(indica), Q5QMZ9(japonica). START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:1904583: response to polyamine macromolecule.	 Character as QTL - Yield and productivity,  Other,  Seed - Morphological traits - Grain shape	Os01g0200300	LOC_Os01g10320.1				GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000397 - grain size	
8467	HOX30	Oshox30	HOMEOBOX GENE 30	rice homeobox gene 30	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX30				 Other						GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding		
8468	HOX31	Oshox31	HOMEOBOX GENE 31	rice homeobox gene 31	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX31				 Other						GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
8470	HOX33	Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22, OsHDZ40, OsHDZIP40, HDZ40, HDZIP40	HOMEOBOX GENE 33	rice homeobox gene 33, Homeobox-leucine zipper protein HOX33, Homeodomain transcription factor HOX33, HD-ZIP protein HOX33, HOMEODOMAIN CONTAINING PROTEIN 3, SKIP interacting protein 22, SKIPa-interacting protein 22, SKIPa-interacting protein 22, homeodomain-leucine zipper transcription factor 40, OsHDZIP transcription factor 40	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX33		12	EF555552. EU368712. A2ZMN9 (indica), Q2QM96 (japonica).  leucin zipper gene family. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:0060992: response to fungicide.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other	Os12g0612700	LOC_Os12g41860.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0002213 - defense response to insect, GO:0005886 - plasma membrane, GO:0043565 - sequence-specific DNA binding	TO:0006001 - salt tolerance, TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009089 - endosperm 
8471	HOX8	Oshox8, OsHDZ35, OsHDZIP35, HDZ35, HDZIP35	HOMEOBOX GENE 8	rice homeobox gene 8, Homeobox-leucine zipper protein HOX8, Homeodomain transcription factor HOX8, HD-ZIP protein HOX8, homeodomain-leucine zipper transcription factor 35, OsHDZIP transcription factor 35	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX8		10	EF555528, AY346329. Q338Z7(indica), Q6V9S9(japonica).	 Other,  Tolerance and resistance - Stress tolerance	Os10g0377300	LOC_Os10g23090.1, LOC_Os10g23090.2				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009089 - endosperm , PO:0025034 - leaf , PO:0009005 - root , PO:0009049 - inflorescence 
8472	HOX9	Oshox9, OsHox9, OsHB2, HB2, OSHB2, OsHDZ37, OsHDZIP37, HDZ37, HDZIP37	HOMEOBOX GENE 9	rice homeobox gene 9, Homeobox-leucine zipper protein HOX9, Homeodomain transcription factor HOX9, HD-ZIP protein HOX9, HOMEODOMAIN CONTAINING PROTEIN 2, homeodomain-leucine zipper transcription factor 37, OsHDZIP transcription factor 37	HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX9		10	EF555530. Q9AV49(japonica), A2Z8L4(indica). leucin zipper gene family. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). PO:0030123: panicle inflorescence. GO:0060992: response to fungicide.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other	Os10g0480200	LOC_Os10g33960.4, LOC_Os10g33960.3, LOC_Os10g33960.2, LOC_Os10g33960.1				GO:0006350 - transcription, GO:0002213 - defense response to insect, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm	TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0006001 - salt tolerance, TO:0000261 - insect damage resistance	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009005 - root , PO:0009030 - carpel 
8473	HAP2A	OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A7, NUCLEAR FACTOR-Y subunit NF-YA7, NF-YA transcription factor 7, NF-YA subunit 7, NF-YA family 7	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		8	AB288027. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os08g0196700	LOC_Os08g09690.2, LOC_Os08g09690.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
8474	HAP2B	OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A9, NUCLEAR FACTOR-Y subunit NF-YA9, NF-YA transcription factor 9, NF-YA subunit 9, NF-YA family 9	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		12	AB288028. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Other	Os12g0613000	LOC_Os12g41880.2, LOC_Os12g41880.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0051607 - defense response to virus, GO:0016602 - CCAAT-binding factor complex, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity	
8475	HAP2C	OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A1, NUCLEAR FACTOR-Y subunit NF-YA1, NF-YA transcription factor 1, NF-YA subunit 1, NF-YA family 1	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2c	3	AB288029, AK069348. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Other	Os03g0174900	LOC_Os03g07880.1, LOC_Os03g07880.2, LOC_Os03g07880.3				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0051607 - defense response to virus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding	TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance	
8476	HAP2D	OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A4, NUCLEAR FACTOR-Y subunit NF-YA4, NF-YA transcription factor 4, NF-YA subunit 4, NF-YA family 4	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2d	3	AB288030. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Other,  Tolerance and resistance - Disease resistance	Os03g0696300	LOC_Os03g48970.1, LOC_Os03g48970.2, LOC_Os03g48970.3, LOC_Os03g48970.4				GO:0016602 - CCAAT-binding factor complex, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0051607 - defense response to virus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
8477	HAP2E	OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A2, NUCLEAR FACTOR-Y subunit NF-YA2, NF-YA transcription factor 2, NF-YA subunit 2, NF-YA family 2	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2e	3	AB288031. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Other	Os03g0411100	LOC_Os03g29760.1, LOC_Os03g29760.2, LOC_Os03g29760.3				GO:0016602 - CCAAT-binding factor complex, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity	
8478	HAP2F	OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A10, NUCLEAR FACTOR-Y subunit NF-YA10, NF-YA transcription factor 10, NF-YA subunit 10, NF-YA family 10	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		12	AB288032. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os12g0618600	LOC_Os12g42400.4, LOC_Os12g42400.3, LOC_Os12g42400.2, LOC_Os12g42400.1				GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0051607 - defense response to virus, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0006350 - transcription	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance	
8479	HAP2G	OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A6, NUCLEAR FACTOR-Y subunit NF-YA6, NF-YA transcription factor 6, NF-YA subunit 6, NF-YA family 6	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		7	AB288033. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Other,  Tolerance and resistance - Disease resistance	Os07g0608200	LOC_Os07g41720.2, LOC_Os07g41720.1				GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0016602 - CCAAT-binding factor complex, GO:0051607 - defense response to virus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0006350 - transcription	TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance	
8480	HAP2H	OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A3, NUCLEAR FACTOR-Y subunit NF-YA3, NF-YA transcription factor 3, NF-YA subunit 3, NF-YA family 3	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2h	3	AB288034. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Other,  Tolerance and resistance - Disease resistance	Os03g0647600	LOC_Os03g44540.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0051607 - defense response to virus, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity	
8481	HAP2I	OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A8, NUCLEAR FACTOR-Y subunit NF-YA8, NF-YA transcription factor 8, endosperm-specific gene 136, NF-YA subunit 8, NF-YA family 8	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	nf-ya8, nf-ya8-1, nf-ya8-2	10	BR000373. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Seed - Morphological traits - Endosperm,  Tolerance and resistance - Disease resistance,  Other,  Seed - Morphological traits - Grain shape,  Character as QTL - Grain quality,  Character as QTL - Yield and productivity	Os10g0397900	LOC_Os10g25850.1				GO:0005737 - cytoplasm, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010167 - response to nitrate, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding	TO:0000598 - protein content, TO:0000696 - starch content, TO:0000266 - chalky endosperm, TO:0000011 - nitrogen sensitivity, TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity	PO:0009089 - endosperm 
8482	HAP2J	OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A5, NUCLEAR FACTOR-Y subunit NF-YA5, NF-YA transcription factor 5, NF-YA subunit 5, NF-YA family 5, NUCLEAR FACTOR-YA5	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap2j, osnfya5	7	BR000374. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1903314: regulation of nitrogen cycle metabolic process. GO:1900056: egative regulation of leaf senescence.	 Other,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os07g0158500	LOC_Os07g06470.2, LOC_Os07g06470.1				GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0010150 - leaf senescence, GO:0042594 - response to starvation, GO:0045848 - positive regulation of nitrogen utilization, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0016602 - CCAAT-binding factor complex, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006995 - cellular response to nitrogen starvation	TO:0001016 - relative chlorophyll content, TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000011 - nitrogen sensitivity, TO:0000153 - relative yield, TO:0002673 - amino acid content, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0000181 - seed weight, TO:0000590 - grain weight, TO:0002759 - grain number, TO:0001034 - relative plant height	PO:0009005 - root , PO:0009047 - stem 
8483	HAP3D	OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9, OsLEC1A, LEC1A	HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	HAP3 subunit D, LEC1-type 3 subunit protein-D, endosperm-specific gene 83, NUCLEAR FACTOR-Y subunit B9, NUCLEAR FACTOR-Y subunit NF-YB9, HAP3 SUBUNIT D, NF-YB subunit 9, NF-YB family 9	HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	osnf-yb9, osnf-yb9-1, osnf-yb9-2	6	AB288035, AB288038. HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX, HAP3, HAP3 subunit of HAP complex, NF-YB, CBF-A. an endosperm-specific LEC1 (LEAFY COTYLEDON1) ortholog. GO:1905613: regulation of developmental vegetative growth.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Other,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Physiological traits - Storage substances,  Reproductive organ - Heading date	Os06g0285200	LOC_Os06g17480.1	GR:0061483			GO:0009845 - seed germination, GO:0010581 - regulation of starch biosynthetic process, GO:0048316 - seed development, GO:0043565 - sequence-specific DNA binding, GO:0009790 - embryonic development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0042127 - regulation of cell proliferation	TO:0000137 - days to heading, TO:0000149 - seed width, TO:0000146 - seed length, TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0000211 - gel consistency, TO:0000487 - endosperm color, TO:0000382 - 1000-seed weight, TO:0020033 - glume length, TO:0000399 - grain thickness, TO:0000575 - endosperm related trait, TO:0000639 - seed fertility, TO:0000064 - embryo related trait, TO:0000485 - sterility related trait, TO:0000346 - tiller number, TO:0000734 - grain length, TO:0000276 - drought tolerance, TO:0000421 - pollen fertility, TO:0000266 - chalky endosperm, TO:0000304 - seed thickness, TO:0000391 - seed size, TO:0000196 - amylose content, TO:0000696 - starch content	PO:0000003 - whole plant , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009010 - seed , PO:0001170 - seed development stage 
8484	LEC1	OsHAP3E, HAP3E, OsLEC1/OsHAP3E, OsLEC1, LEC1, OsNF-YB7, NF-YB7, NFYB7, L1L	LEAFY COTYLEDON 1	HAP3 subunit E, LEC1-type 3 subunit protein-E, leafy cotyledon 1, NUCLEAR FACTOR-Y subunit B7, NUCLEAR FACTOR-Y subunit NF-YB7, LEC1-LIKE, LEAFY COTYLEDON1-LIKE, HAP3 SUBUNIT E, NF-YB subunit 7, NF-YB family 7, LEAFY COTYLEDON1	HAP3E SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	osnf-yb7, Oslec1, Oslec1-1, Oslec1-2	2	AB288036. HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX, NF-YB, CBF-A. PO:0030104: caryopsis fruit. GO:2000034: regulation of seed maturation. GO:0080186: developmental vegetative growth. GO:1990110: callus formation.	 Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Seed - Physiological traits - Dormancy,  Seed - Morphological traits - Embryo,  Character as QTL - Germination,  Other,  Tolerance and resistance - Stress tolerance	Os02g0725700	LOC_Os02g49370.1, LOC_Os02g49370.2	GR:0061484			GO:0010099 - regulation of photomorphogenesis, GO:0009845 - seed germination, GO:0009269 - response to desiccation, GO:0048700 - acquisition of desiccation tolerance, GO:0010187 - negative regulation of seed germination, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010109 - regulation of photosynthesis, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0005634 - nucleus, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048316 - seed development, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0010431 - seed maturation, GO:0009740 - gibberellic acid mediated signaling, GO:0009790 - embryonic development, GO:0008284 - positive regulation of cell proliferation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009738 - abscisic acid mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription	TO:0000485 - sterility related trait, TO:0000391 - seed size, TO:0000137 - days to heading, TO:0000620 - embryo development trait, TO:0000495 - chlorophyll content, TO:0000064 - embryo related trait, TO:0000430 - germination rate, TO:0000397 - grain size, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000653 - seed development trait, TO:0000488 - seed composition based quality trait, TO:0000428 - callus induction, TO:0000163 - auxin sensitivity, TO:0002661 - seed maturation	PO:0005052 - plant callus , PO:0020110 - scutellum , PO:0005421 - parenchyma , PO:0009010 - seed , PO:0007057 - 0 seed germination stage , PO:0007631 - plant embryo stage , PO:0007632 - seed maturation stage , PO:0001170 - seed development stage , PO:0009009 - plant embryo 
8485	HAP3F	OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10	HAP3F SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B10, NUCLEAR FACTOR-Y subunit NF-YB10, NF-YB subunit 10, NF-YB family 10	HAP3F SUBUNIT OF CCAAT-BOX BINDING COMPLEX		7	AB288037.	 Reproductive organ - Heading date,  Other	Os07g0606600	LOC_Os07g41580.1				GO:2000028 - regulation of photoperiodism, flowering, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000137 - days to heading, TO:0002616 - flowering time	
8486	HAP3G	OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6	HAP3G SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B6, NUCLEAR FACTOR-Y subunit NF-YB6, NF-YB subunit 6, NF-YB family 6	HAP3G SUBUNIT OF CCAAT-BOX BINDING COMPLEX		1	AB288038. LOC_Os01g70890.	 Other	Os01g0935200	LOC_Os01g70890.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription		
8488	HAP3I	OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8	HAP3I SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B8, NUCLEAR FACTOR-Y subunit NF-YB8, NF-YB subunit 8, NF-YB family 8	HAP3I SUBUNIT OF CCAAT-BOX BINDING COMPLEX		3	LOC_Os03g29970. AB288040.	 Reproductive organ - Heading date,  Other	Os03g0413000	LOC_Os03g29970.1				GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:2000028 - regulation of photoperiodism, flowering	TO:0002616 - flowering time	
8489	HAP3J	OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5	HAP3J SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit B5, NUCLEAR FACTOR-Y subunit NF-YB5, NF-YB subunit 5, NF-YB family 5	HAP3J SUBUNIT OF CCAAT-BOX BINDING COMPLEX		1	BR000375. LOC_Os01g70880.	 Other	Os01g0935100	LOC_Os01g70880.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding		
8490	HAP3K	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, NF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41	HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear transcription factor Y subunit B-1, CCAAT-binding transcription factor subunit NF-YB1, leafy cotyledon 1, endosperm-specific gene 41, Nuclear Factor YB1, NUCLEAR FACTOR-Y subunit B1, NUCLEAR FACTOR-Y subunit NF-YB1, NF-YB subunit 1, NF-YB family 1	HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	osnf-yb1, osnf-yb1-1, osnf-yb1-2, crnf-yb1, crnf-yb1-4, crnf-yb1-7, crnf-yb1-9, nf-yb1	2	AJ300218. NF-YB, CBF-A. Q6Z348. GO:2000014: regulation of endosperm development. GO:2000034: regulation of seed maturation. GO:2000033: regulation of seed dormancy process. TO:0000975: grain width.TO:0001069: cooking quality trait.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Character as QTL - Grain quality,  Character as QTL - Germination,  Seed - Morphological traits - Endosperm,  Other,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances	Os02g0725900	LOC_Os02g49410.1				GO:0005829 - cytosol, GO:0010431 - seed maturation, GO:0048316 - seed development, GO:0010600 - regulation of auxin biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0045449 - regulation of transcription, GO:0006350 - transcription, GO:0010162 - seed dormancy, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0010581 - regulation of starch biosynthetic process, GO:0008283 - cell proliferation, GO:0048623 - seed germination on parent plant, GO:0005737 - cytoplasm, GO:0009960 - endosperm development, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0002672 - auxin content, TO:0000184 - seed anatomy and morphology trait, TO:0000696 - starch content, TO:0000211 - gel consistency, TO:0000382 - 1000-seed weight, TO:0000619 - vivipary, TO:0000379 - cool paste viscosity, TO:0000734 - grain length, TO:0000253 - seed dormancy, TO:0000615 - abscisic acid sensitivity, TO:0000462 - gelatinization temperature, TO:0000409 - peak viscosity, TO:0000408 - hot paste viscosity, TO:0000196 - amylose content, TO:0000397 - grain size, TO:0000266 - chalky endosperm, TO:0000162 - seed quality, TO:0006001 - salt tolerance, TO:0002661 - seed maturation, TO:0000653 - seed development trait, TO:0000604 - fat and essential oil content, TO:0000391 - seed size	PO:0007632 - seed maturation stage , PO:0001170 - seed development stage , PO:0005360 - aleurone layer , PO:0009089 - endosperm , PO:0006220 - central endosperm , PO:0007633 - endosperm development stage 
8491	HAP5A	OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1, OsNF-YC4-2, NF-YC4-2	HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C1 subunit, Nuclear factor Y C subunit 1, NUCLEAR FACTOR-Y subunit C1, NUCLEAR FACTOR-Y subunit NF-YC1, NF-YC subunit 1, NF-YC family 1	HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEX		2	AB288041. LOC_Os02g07450. an AtNF-YC4 homolog. OsNF-YC4-2 in Li et al. 2015.	 Reproductive organ - Heading date,  Other,  Tolerance and resistance - Stress tolerance	Os02g0170500	LOC_Os02g07450.1, LOC_Os02g07450.2				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
8492	HAP5B	OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3	HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C4 subunit, Nuclear factor Y C subunit 4, NUCLEAR FACTOR-Y subunit C4, NUCLEAR FACTOR-Y subunit NF-YC4, NF-YC subunit 4, NF-YC family 4	HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap5b	6	AB288042. LOC_Os06g45640. an AtNF-YC4 homolog. OsNF-YC4-3 in Li et al. 2015.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Other	Os06g0667100	LOC_Os06g45640.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009414 - response to water deprivation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0016602 - CCAAT-binding factor complex, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0006350 - transcription, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0002616 - flowering time	
8493	HAP5C	OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1	HAP5C SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C2 subunit, Nuclear factor Y C subunit 2, NUCLEAR FACTOR-Y subunit C2, NUCLEAR FACTOR-Y subunit NF-YC2, NF-YC subunit 2, NF-YC family 2	HAP5C SUBUNIT OF CCAAT-BOX BINDING COMPLEX		3	AB288043. an AtNF-YC4 homolog. OsNF-YC4-1 in Li et al. 2015. Protein Data Bank under PDB:7C9O (DNA-bound HD1CCT/GHD8/OsNF-YC2) and PDB:7C9P (GHD8/OsNF-YC2).	 Other,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os03g0251350	LOC_Os03g14669.1, LOC_Os03g14669.2				GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000696 - starch content, TO:0002616 - flowering time	
8494	HAP5D	OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6	HAP5D SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C6 subunit, Nuclear factor Y C subunit 6, NUCLEAR FACTOR-Y subunit C6, NUCLEAR FACTOR-Y subunit NF-YC6, NF-YC subunit 6, NF-YC family 6	HAP5D SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap5d	8	AB288044. LOC_Os08g38780.	 Other,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os08g0496500	LOC_Os08g38780.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016602 - CCAAT-binding factor complex, GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0002616 - flowering time, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
8495	HAP5E	OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7	HAP5E SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C7 subunit, Nuclear factor Y C subunit 7, NUCLEAR FACTOR-Y subunit C7, NUCLEAR FACTOR-Y subunit NF-YC7, NF-YC subunit 7, NF-YC family 7	HAP5E SUBUNIT OF CCAAT-BOX BINDING COMPLEX		9	AB288045. LOC_Os09g30310.	 Other,  Tolerance and resistance - Stress tolerance	Os09g0480700	LOC_Os09g30310.1				GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0016602 - CCAAT-binding factor complex, GO:0006350 - transcription, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
8496	HAP5F	OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5	HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C5 subunit, Nuclear factor Y C subunit 5, NUCLEAR FACTOR-Y subunit C5, NUCLEAR FACTOR-Y subunit NF-YC5, NF-YC subunit 5, NF-YC family 5	HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX		8	AB288046. LOC_Os08g10560. 	 Tolerance and resistance - Stress tolerance,  Other	Os08g0206500					GO:0016602 - CCAAT-binding factor complex, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
8497	HAP5G	OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3	HAP5G SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear factor Y C3 subunit, Nuclear factor Y C subunit 3, NUCLEAR FACTOR-Y subunit C3, NUCLEAR FACTOR-Y subunit NF-YC3, NF-YC subunit 3, NF-YC family 3	HAP5G SUBUNIT OF CCAAT-BOX BINDING COMPLEX		4	AB288047. LOC_Os04g58680. 	 Other	Os04g0683400	LOC_Os04g58680.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0016602 - CCAAT-binding factor complex, GO:0006350 - transcription, GO:0005634 - nucleus		
8498	DRAP1	OsDrAp1, DrAp1	DR1 ASSOCIATED PROTEIN 1	Dr1-associated protein1, eukaryotic general repressor DrAp1	DR1 ASSOCIATED PROTEIN 1		11	AF464904. subunit of Dr1/DrAp1 repressor. HQ858816. CCAAT transcription factor.	 Other	Os11g0544700 	LOC_Os11g34200.1				GO:0043565 - sequence-specific DNA binding, GO:0005515 - protein binding, GO:0016564 - transcription repressor activity, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009005 - root , PO:0000005 - cultured plant cell , PO:0009047 - stem , PO:0020104 - leaf sheath 
8499	DRAP2	OsDrAp2, DrAp2, OsHAPL1, HAPL1, DLN150, OsDLN150	DR1 ASSOCIATED PROTEIN 2	Dr1-associated protein2, eukaryotic general repressor DrAp2, Heme Activator Protein like 1, DLN repressor 150, DLN motif protein 150	DR1 ASSOCIATED PROTEIN 2	oshapl1	5	AB288048. subunit of Dr1/DrAp1 repressor.	 Other,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os05g0494100	LOC_Os05g41450.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0016564 - transcription repressor activity, GO:0005634 - nucleus, GO:0005515 - protein binding, GO:0043565 - sequence-specific DNA binding, GO:0009648 - photoperiodism, GO:0048573 - photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering	TO:0000557 - secondary branch number, TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0000040 - panicle length, TO:0000137 - days to heading, TO:0000382 - 1000-seed weight, TO:0000447 - filled grain number, TO:0002616 - flowering time, TO:0000346 - tiller number	PO:0025034 - leaf 
8500	CSL1	csl1	COMPACT SHOOT AND LEAFY HEAD 1	compact shoot and leafy head 1					 Heterochrony				0		GO:0010228 - vegetative to reproductive phase transition		
8501	CYP703A3	OsCYP703A3	CYTOCHROME P450 HYDROXYLASE 703A3		CYTOCHROME P450 HYDROXYLASE 703A3	cyp703a3-3	8		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0131100	LOC_Os08g03682.1		0		GO:0010584 - pollen exine formation, GO:0048653 - anther development, GO:0004497 - monooxygenase activity	TO:0000245 - pollen free, TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0009066 - anther 
8502	KAR		BETA KETOACYL REDUCTASE	Beta-ketoacyl reductase, 3-oxoacyl-reductase	BETA KETOACYL REDUCTASE		12	GO:0102131: 3-oxo-glutaryl-[acp] methyl ester reductase activity. GO:0102132: 3-oxo-pimeloyl-[acp] methyl ester reductase activity.	 Biochemical character	Os12g0242700	LOC_Os12g13930.1		0		GO:0051287 - NAD or NADH binding, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0030497 - fatty acid elongation, GO:0055114 - oxidation reduction, GO:0009507 - chloroplast, GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase activity		
8503	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3	DENSE AND ERECT PANICLE 1	dense and erect panicle 1, erect-pose panicle, DENSE PANICLE 1, DENSE AND ERECT PANICLE1, DENSE AND ERECT PANICLES 1, G gamma subunit DEP1, Heterotrimeric G Protein gamma4 Subunit		dep1, Osdep1, Dn1-1, Dn1-2, Dn1-3, dep1-1, dep1-2, dep1-32, DEP1-A, DEP1-B	9	FJ039905, FJ039904. AB475006, AB475007. Putative keratin associated protein. phosphatidylethanolamine-binding protein-like domain protein. Reduce length of the inflorescence internodes. TO:0000800: inflorescence density (panicle density), TO:0000847: panicle anatomy and morphology trait. a major rice nitrogen-use efficiency quantitative trait locus qNGR9. TO:0000975: grain width.	 Vegetative organ - Root,  Vegetative organ - Culm,  Reproductive organ - Panicle, Mode of branching,  Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os09g0441900	LOC_Os09g26999.3, LOC_Os09g26999.2, LOC_Os09g26999.1		0		GO:0005886 - plasma membrane, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0048573 - photoperiodism, flowering, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0009651 - response to salt stress, GO:0005882 - intermediate filament	TO:0006001 - salt tolerance, TO:0000456 - spikelet number, TO:0000043 - root anatomy and morphology trait, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000455 - seed set percent, TO:0000137 - days to heading, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000734 - grain length, TO:0000050 - inflorescence branching, TO:0002731 - grain length to width ratio, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0002759 - grain number, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
8504	DLT	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2, OsGS6, GS6	DWARF AND LOW-TILLERING	GRAS protein 32, SMALL ORGAN SIZE 2	GRAS PROTEIN 32	dlt, dlt-2, smos2, smos2-1, smos2-2	6	regulate rice tillering. GAI-PGA-SCR(GRAS) FAMILY PROTEIN. GO:1900457: regulation of brassinosteroid mediated signaling pathway. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1902347: response to strigolactone. TO:0000975: grain width. GO:1901698: response to nitrogen compound.	 Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Vegetative organ - Root,  Character as QTL - Plant growth activity	Os06g0127800	LOC_Os06g03710.1		0		GO:0006351 - transcription, DNA-dependent, GO:0000226 - microtubule cytoskeleton organization, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0009755 - hormone-mediated signaling, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009734 - auxin mediated signaling pathway, GO:0008283 - cell proliferation, GO:0010229 - inflorescence development, GO:0016131 - brassinosteroid metabolic process, GO:0080006 - internode patterning, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0007275 - multicellular organismal development, GO:0051302 - regulation of cell division	TO:0000346 - tiller number, TO:0000357 - growth and development trait, TO:0000576 - stem length, TO:0000019 - seedling height, TO:0000145 - internode length, TO:0002676 - brassinosteroid content, TO:0000621 - inflorescence development trait, TO:0000397 - grain size, TO:0000227 - root length, TO:0000326 - leaf color, TO:0002616 - flowering time, TO:0002677 - brassinosteroid sensitivity, TO:0000040 - panicle length, TO:0000011 - nitrogen sensitivity, TO:0002684 - plant cell size, TO:0002601 - stamen size, TO:0002602 - pistil size, TO:0000391 - seed size, TO:0002637 - leaf size, TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0001035 - stem width, TO:0000152 - panicle number, TO:0002688 - leaf lamina joint bending, TO:0000329 - tillering ability	PO:0001083 - inflorescence development stage 
8506	DWL1		DWARFISM AND WITHERED LEAF TIP 1				3		 Vegetative organ - Culm				0		GO:0007275 - multicellular organismal development		
8507	DMC1A	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51	MEIOTIC PROTEIN DMC1A	MEIOTIC PROTEIN Dmc1A, DNA repair protein Rad51	MEIOTIC PROTEIN DMC1A	Osdmc1a	12	AB046620, AY123340, AB079873. AB065111. AF265548. Disrupted meiotic cDNA 1, OsDmc1, Dmc1. PO:0009004; gametophyte. RICE LIM15 (MEIOSIS SPECIFIC), DMC1 homologue.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0143800	LOC_Os12g04980.1	GR:0100601	0		GO:0008094 - DNA-dependent ATPase activity, GO:0007129 - synapsis, GO:0003684 - damaged DNA binding, GO:0043069 - negative regulation of programmed cell death, GO:0051321 - meiotic cell cycle, GO:0005634 - nucleus, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0005524 - ATP binding, GO:0005515 - protein binding, GO:0007126 - meiosis, GO:0003677 - DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0000707 - meiotic DNA recombinase assembly, GO:0007131 - reciprocal meiotic recombination, GO:0000733 - DNA strand renaturation, GO:0006281 - DNA repair, GO:0006310 - DNA recombination, GO:0051026 - chiasma formation	TO:0000389 - nuclear mediated male sterility, TO:0000437 - male sterility, TO:0000599 - enzyme activity	PO:0009049 - inflorescence , PO:0009004 - gametophyte 
8508	DMC1B	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B	MEIOTIC PROTEIN DMC1B	MEIOTIC PROTEIN Dmc1B	MEIOTIC PROTEIN DMC1B	Osdmc1b	11	AY13339, AB079874. AF265549. Disrupted meiotic cDNA 1. Dmc1, OsDmc. RICE LIM15 (MEIOSIS SPECIFIC), DMC1 homologue. AB065112, AB064544. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os11g0146800	LOC_Os11g04954.1		0		GO:0005634 - nucleus, GO:0006310 - DNA recombination, GO:0007126 - meiosis, GO:0003684 - damaged DNA binding, GO:0005524 - ATP binding, GO:0007131 - reciprocal meiotic recombination, GO:0000707 - meiotic DNA recombinase assembly, GO:0003677 - DNA binding, GO:0051026 - chiasma formation, GO:0006281 - DNA repair, GO:0000724 - double-strand break repair via homologous recombination, GO:0008094 - DNA-dependent ATPase activity, GO:0005515 - protein binding, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0000733 - DNA strand renaturation, GO:0007129 - synapsis	TO:0000485 - sterility related trait, TO:0000437 - male sterility	PO:0009049 - inflorescence 
8510	PIP1;2	OsPIP1;2, PIP1-2, OsPIP1-2	PLASMA MEMBRANE INTRINSIC PROTEIN 1;2	Probable aquaporin PIP1-2, Plasma membrane intrinsic protein 1-2	PLASMA MEMBRANE INTRINSIC PROTEIN 1;2	Ospip1;2	4	AL606687. Q7XSQ9. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0559700	LOC_Os04g47220.1				GO:0009737 - response to abscisic acid stimulus, GO:0046686 - response to cadmium ion, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0010037 - response to carbon dioxide, GO:0015770 - sucrose transport, GO:0009915 - phloem loading, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0034021 - response to silicon dioxide	TO:0000615 - abscisic acid sensitivity, TO:0001015 - photosynthetic rate, TO:0000522 - stomatal conductance, TO:0000394 - drought related trait, TO:0000396 - grain yield, TO:0006001 - salt tolerance, TO:0000291 - carbohydrate content, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity	PO:0009005 - root , PO:0000003 - whole plant , PO:0025034 - leaf , PO:0004006 - mesophyll cell 
8511	PIP1;3	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3	PLASMA MEMBRANE INTRINSIC PROTEIN 1;3	Aquaporin PIP 1.3, Aquaporin PIP 1-3, Plasma membrane intrinsic protein 1-3, Water channel protein RWC3, Aquaporin RWC3	PLASMA MEMBRANE INTRINSIC PROTEIN 1;3		2	AP004026. Q9SXF8. AB029325. BE607372. Water channel protein (WCP-I). GO:0035445: borate transmembrane transport. TO:0006043: boron concentration. TO:0020100: nitrate uptake. GO:0035378: carbon dioxide transmembrane transport. GO:1905710: positive regulation of membrane permeability. GO:0080170: hydrogen peroxide transmembrane transport.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os02g0823100	LOC_Os02g57720.1				GO:0006810 - transport, GO:0005886 - plasma membrane, GO:0042542 - response to hydrogen peroxide, GO:0010036 - response to boron, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0055085 - transmembrane transport, GO:0015250 - water channel activity, GO:0006950 - response to stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0005215 - transporter activity, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0016020 - membrane, GO:0006833 - water transport, GO:0042128 - nitrate assimilation, GO:0042742 - defense response to bacterium, GO:0046713 - boron transport	TO:0000018 - boron sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000241 - leaf number, TO:0000442 - plant fresh weight, TO:0000352 - plant dry weight, TO:0000457 - total biomass yield, TO:0001017 - water use efficiency, TO:0001027 - net photosynthetic rate, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0005059 - root endodermis , PO:0009005 - root 
8512	PIP2;2	OsPIP2;2, PIP2-2, OsPIP2-3	PLASMA MEMBRANE INTRINSIC PROTEIN 2;2	Probable aquaporin PIP2-2, Plasma membrane intrinsic protein 2-2	PLASMA MEMBRANE INTRINSIC PROTEIN 2;2	Ospip2;2	2	AP006168, Q6K215. BE607365. Water channel protein (WCP-I). OsPIP2-3 in Guo et al. 2006. GO:1905710: positive regulation of membrane permeability. GO:0071588: hydrogen peroxide mediated signaling pathway. GO:0140426: PAMP-triggered immunity signalling pathway. GO:0080170: hydrogen peroxide transmembrane transport.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os02g0629200	LOC_Os02g41860.3, LOC_Os02g41860.2, LOC_Os02g41860.1, LOC_Os02g41860.4				GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0055085 - transmembrane transport, GO:0042542 - response to hydrogen peroxide, GO:0005215 - transporter activity, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0006970 - response to osmotic stress, GO:0043410 - positive regulation of MAPKKK cascade, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006833 - water transport, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0034021 - response to silicon dioxide, GO:0050832 - defense response to fungus, GO:0045089 - positive regulation of innate immune response, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000095 - osmotic response sensitivity, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
8513	PIP2;4	OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4	PLASMA MEMBRANE INTRINSIC PROTEIN 2;4	Aquaporin PIP2.4, Aquaporin PIP2-4, Plasma membrane intrinsic protein 2-4	PLASMA MEMBRANE INTRINSIC PROTEIN 2;4		7	AP004668. Q8GRT8. GO:1901684: arsenate ion transmembrane transport. GO:1905710: positive regulation of membrane permeability.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0448100	LOC_Os07g26630.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0005215 - transporter activity, GO:0034021 - response to silicon dioxide, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0006833 - water transport, GO:0055085 - transmembrane transport, GO:0006970 - response to osmotic stress	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
8514	PIP2;6	OsPIP2;6, PIP2-6, OsPIP2-6, PIP2-5, OsPIP2-5	PLASMA MEMBRANE INTRINSIC PROTEIN 2;6	Probable aquaporin PIP2-6, Plasma membrane intrinsic protein 2-6	PLASMA MEMBRANE INTRINSIC PROTEIN 2;6		4	AL731636. Q7XLR1. OsPIP2-5 in Guo et al. 2006. GO:0035445: borate transmembrane transport. TO:0006043: boron concentration. GO:1901684: arsenate ion transmembrane transport.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0233400	LOC_Os04g16450.1				GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0034021 - response to silicon dioxide, GO:0010036 - response to boron, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0046686 - response to cadmium ion, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0046713 - boron transport, GO:0046685 - response to arsenic	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000018 - boron sensitivity	PO:0009005 - root 
8515	PIP2;7	OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6, OsPIP-3A, PIP-3A	PLASMA MEMBRANE INTRINSIC PROTEIN 2;7	Probable aquaporin PIP2.7, Probable aquaporin PIP2-7, Plasma membrane intrinsic protein 2-7	PLASMA MEMBRANE INTRINSIC PROTEIN 2;7		9	AP006149. Q651D5. OsPIP2-6 in Guo et al . 2006. OsPIP-3A in Chen et al. 2022. GO:1901684: arsenate ion transmembrane transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0541000	LOC_Os09g36930.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005215 - transporter activity, GO:0046685 - response to arsenic, GO:0006970 - response to osmotic stress, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0016020 - membrane, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
8516	PIP2;8	OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7	PLASMA MEMBRANE INTRINSIC PROTEIN 2;8	Probable aquaporin PIP2.8, Probable aquaporin PIP2-8, Plasma membrane intrinsic protein 2-8	PLASMA MEMBRANE INTRINSIC PROTEIN 2;8		3	AC092263. Q7Y1E6. OsPIP2-7 in Guo et al. 2006.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0861300	LOC_Os03g64330.1				GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0055085 - transmembrane transport, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	
8517	NIP1;1	OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1	NOD26 LIKE INTRINSIC PROTEIN 1;1	Aquaporin NIP1-1, NOD26-like intrinsic protein 1-1, rice Mip 1, major intrinsic protein 1, Nodulin 26	NOD26 LIKE INTRINSIC PROTEIN 1;1		2	AP004070. Q40746. D17443. D17443. GO:1901684: arsenate ion transmembrane transport. TO:0006054: arsenic content trait. TO:1000026: root system arsenic content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0232900	LOC_Os02g13870.1				GO:0046688 - response to copper ion, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0046685 - response to arsenic	TO:0000021 - copper sensitivity	PO:0020141 - stem node , PO:0008039 - stem base , PO:0009051 - spikelet , PO:0009005 - root 
8518	NIP1;2	OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2	NOD26 LIKE INTRINSIC PROTEIN 1;2	Aquaporin NIP1-2, NOD26-like intrinsic protein 1-2	NOD26 LIKE INTRINSIC PROTEIN 1;2	Osnip1;2, Osnip1;2-1, Osnip1;2-2	1	AP003105. Q0JPT5. TO:1000051: shoot system aluminum content. TO:1000025: root system aluminum content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0202800	LOC_Os01g10600.1				GO:0016021 - integral to membrane, GO:0010044 - response to aluminum ion, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0055085 - transmembrane transport, GO:0015690 - aluminum ion transport, GO:0010232 - vascular transport	TO:0000354 - aluminum sensitivity, TO:0000465 - mineral and ion content related trait	
8519	NIP1;3	OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3	NOD26 LIKE INTRINSIC PROTEIN 1;3	Aquaporin NIP1-3, NOD26-like intrinsic protein 1-3	NOD26 LIKE INTRINSIC PROTEIN 1;3		5	AC135918. Q0DK16. LOC_Os05g11560 (Os05g0205000/Os05g0205050).	 Biochemical character	Os05g0205000	LOC_Os05g11560.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0055085 - transmembrane transport		
8523	ASA	OsNIP3;1, NIP3;1, NIP3-1, OsNIP3.1, NIP3.1, OsASA	APICAL SPIKELET ABORTION	Aquaporin NIP3-1, NOD26-like intrinsic protein 3-1, nodulin 26-like intrinsic protein 3-1, apical spikelet abortion	NOD26 LIKE INTRINSIC PROTEIN 3;1	nip3;1-1, nip3;1-2, asa	10	AB856420. AC068924. Q0IWF3. GO:1901684: arsenate ion transmembrane transport. GO:0035445: borate transmembrane transport. TO:1000053: shoot system boron content. TO:0006043: boron content. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process. TO:1000023: lemma morphology trait. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait.	 Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os10g0513200	LOC_Os10g36924.1				GO:0009536 - plastid, GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0009556 - microsporogenesis, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0010337 - regulation of salicylic acid metabolic process, GO:0005215 - transporter activity, GO:0048656 - tapetal layer formation, GO:0009555 - pollen development, GO:0010036 - response to boron, GO:0010229 - inflorescence development, GO:0016021 - integral to membrane	TO:0000621 - inflorescence development trait, TO:0006011 - lodicule shape, TO:0000346 - tiller number, TO:0000210 - anther number, TO:0000207 - plant height, TO:0000614 - lemma shape, TO:0000657 - spikelet anatomy and morphology trait, TO:0000214 - anther shape, TO:0000187 - anther color, TO:0000421 - pollen fertility, TO:0000605 - hydrogen peroxide content	PO:0009049 - inflorescence , PO:0009053 - peduncle , PO:0005004 - shoot node , PO:0005352 - xylem , PO:0001007 - pollen development stage , PO:0000074 - parenchyma cell , PO:0001083 - inflorescence development stage , PO:0009066 - anther 
8524	NIP3;2	OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2	NOD26 LIKE INTRINSIC PROTEIN 3;2	Aquaporin NIP3-2, NOD26-like intrinsic protein 3-2	NOD26 LIKE INTRINSIC PROTEIN 3;2	nip3;2-1, nip3;2-2	8	AP005467. Q7EYH7. LOC_Os08g05590. GO:1901684: arsenate ion transmembrane transport. TO:1000026: root system arsenic content. TO:0006054: arsenic content trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0152000	LOC_Os08g05590.1				GO:0046685 - response to arsenic, GO:0005215 - transporter activity, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0015104 - antimonite transmembrane transporter activity		
8525	NIP3;3	OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3	NOD26 LIKE INTRINSIC PROTEIN 3;3	Aquaporin NIP3-3, NOD26-like intrinsic protein 3-3	NOD26 LIKE INTRINSIC PROTEIN 3;3		8	AP005467. Q84S07. LOC_Os08g05600. GO:1901684: arsenate ion transmembrane transport. TO:0006054: arsenic content trait.	 Biochemical character	Os08g0152100	LOC_Os08g05600.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005215 - transporter activity, GO:0006810 - transport		
8526	NIP4;1	OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1	NOD26 LIKE INTRINSIC PROTEIN 4;1	Aquaporin NIP4-1, NOD26-like intrinsic protein 4-1	NOD26 LIKE INTRINSIC PROTEIN 4;1		1	AP003219. Q9ASI1.	 Biochemical character	Os01g0112400	LOC_Os01g02190.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0016020 - membrane, GO:0006810 - transport		
8527	SIP1;1	OsSIP1;1, SIP1-1, OsSIP1, SIP1	SMALL AND BASIC INTRINSIC PROTEIN 1;1	Aquaporin SIP1-1, Small basic intrinsic protein 1-1	SMALL AND BASIC INTRINSIC PROTEIN 1;1		1	AP003047. Q5VR89.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0182200	LOC_Os01g08660.1				GO:0005215 - transporter activity, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009651 - response to salt stress, GO:0034976 - response to endoplasmic reticulum stress, GO:0006970 - response to osmotic stress, GO:0050832 - defense response to fungus, GO:0051775 - response to redox state, GO:0005789 - endoplasmic reticulum membrane, GO:0006810 - transport, GO:0016020 - membrane, GO:0030104 - water homeostasis, GO:0042542 - response to hydrogen peroxide, GO:0016021 - integral to membrane, GO:0006979 - response to oxidative stress, GO:0016023 - cytoplasmic membrane-bounded vesicle	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	PO:0025034 - leaf 
8528	SIP1;2	OsSIP1;2, OsSTA98, OsSIP2, SIP2	SMALL AND BASIC INTRINSIC PROTEIN 1;2		SMALL AND BASIC INTRINSIC PROTEIN 1;2		3	AC119748. a mature anther-preferentially expressed gene. OsSIP2 in Miao et al. 2024.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0320000	LOC_Os03g20410.1				GO:0009269 - response to desiccation, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0006810 - transport, GO:0030104 - water homeostasis, GO:0016021 - integral to membrane, GO:0051775 - response to redox state, GO:0005789 - endoplasmic reticulum membrane, GO:0050832 - defense response to fungus, GO:0016020 - membrane, GO:0034976 - response to endoplasmic reticulum stress, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0005215 - transporter activity, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0009066 - anther 
8529	MIR1425	OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p	MICRORNA1425	microRNA1425, osa-miRNA1425			5	miRBase accession: MI0006965. LM382873 LM380728. predicted targets: PPR proteins, confirmed target: Os10g0495200. target gene(s): RF-1. targets: Os10g0495200, Os10g0497300, Os03g0191100 (Kansal et al. 2021).	 Tolerance and resistance - Stress tolerance,  Other	Os05g0245700			0		GO:0019722 - calcium-mediated signaling, GO:0009414 - response to water deprivation, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0009737 - response to abscisic acid stimulus, GO:0006379 - mRNA cleavage	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
8530	MIR1428E	OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p	MICRORNA1428E	microRNA1428e, osa-miRNA1428e			3	miRBase accession: MI0008239. Stem-loop predicted structures for osa-miR1428e and osa-miR1428d found in AK102950 (Os03g0611100). miR1428e_3p targets Os08g37800 and Os03g17980 mRNAs, both encoding kinases of the sucrose nonfermenting-related kinase 1 (SnRK1) family (Zhu et al. 2008). EU563913-EU563916. Predicted target(s): Os03g0289100, Os12g0479300, Os08g0484600. LM381019.	 Other	Os03g0611100					GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
8531	miR1428.1	OsmiR1428.1, osa-miR1428.1	MICRORNA1428.1	microRNA1428.1, osa-miRNA1428.1			3	osa-miR1428.1 maps to an intron of gene Os03g0791800 which gives an mRNA (AK067703) coding for a conserved ubiquitin-carrier protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
8532	MIR2055	miR2055, OsmiR2055, osa-miR2055, osa-MIR2055	MICRORNA2055	microRNA1425, osa-miRNA1425			9	miRBASE accession: MI0010489. predicted targets: Os01g0871200, Os06g0484800, Os04g0629300, Os05g0560400, Os01g0323600.LM381193	 Other	Os09g0103400	LOC_Os09g01610.1				GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
8533	MIR159A	miR159a, osa-miR159a, osa-MIR159a, OsmiR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2	MICRORNA159A				1	miRBASE accession: MI0001092. predicted targets: Os03g0113500(a GT-2 like transcription factor), Os10g0516500 , confirmed target: Os10g0495200. AY551215. LM379305, LM381143. 	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits,  Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance	Os01g0507000	LOC_Os01g32259.1				GO:0002213 - defense response to insect, GO:0048443 - stamen development, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0048316 - seed development, GO:0009555 - pollen development, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000653 - seed development trait, TO:0000734 - grain length, TO:0000074 - blast disease, TO:0000371 - yield trait, TO:0006032 - panicle size, TO:0000696 - starch content, TO:0000207 - plant height, TO:0000424 - brown planthopper resistance, TO:0000053 - pollen sterility, TO:0000187 - anther color, TO:0000342 - panicle axis angle, TO:0000485 - sterility related trait, TO:0000447 - filled grain number, TO:0000303 - cold tolerance	PO:0001170 - seed development stage , PO:0001007 - pollen development stage 
8534	miR827	miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b	MICRORNA827	MICRORNA827a, MICRORNA827b, osa-miRNA827b			2	OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance. miRBASE accession: MI0010490. miR827 was upregulated by phosphate starvation and strongly induced by the combined stress of salt stress under conditions of potassium starvation (Jeong et al. 2011). predicted target: Os03g0289100,  confirmed target: Os04g0573000 (Lacombe et al. 2008). TO:0020102: phosphate content. Osa-miR827a is encoded by a single locus mapping to an intergenic region on chromosome 2 (Lacombe et al. 2008).LM381194	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0016036 - cellular response to phosphate starvation, GO:0035195 - gene silencing by miRNA, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	
8535	miR1874	OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p	MICRORNA1874				8	miRBASE accession: MI0008277. predicted to target Os04g0311100, Os10g0337400. LM381052. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000011 - nitrogen sensitivity, TO:0000303 - cold tolerance	
8536	GSL1	OsGSL1, CalS10, OsCalS10	BETA-1,3-GLUCANASE ACTIVITY 1	Oryza sativa callose synthase 1, callose synthase 1			6	CalS10 in Ge et al. 2024.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0112800/Os06g0113150	LOC_Os06g02260.2, LOC_Os06g02260.1				GO:0016021 - integral to membrane, GO:0052542 - callose deposition during defense response, GO:0033903 - endo-1,3(4)-beta-glucanase activity, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0051607 - defense response to virus, GO:0010266 - response to vitamin B1, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity	TO:0000148 - viral disease resistance	PO:0009005 - root , PO:0009066 - anther , PO:0025034 - leaf 
8537	GSL2	OsGSL2, CalS12-2, OsCalS12-2	BETA-1,3-GLUCANASE ACTIVITY 2	Oryza sativa callose synthase 2, callose synthase 2	CALLOSE SYNTHASE 2		1	CalS12-2 in Ge et al. 2024.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0672500	LOC_Os01g48200.1				GO:0016021 - integral to membrane, GO:0002215 - defense response to nematode, GO:0052543 - callose deposition in cell wall, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity	TO:0000384 - nematode damage resistance, TO:0000328 - sucrose content	PO:0009066 - anther , PO:0009005 - root , PO:0025034 - leaf 
8538	GSL3	OsGSL3, CalS12, OsCalS12	BETA-1,3-GLUCANASE ACTIVITY 3	Oryza sativa callose synthase 3, callose synthase 3			1	CalS12 in Ge et al. 2024.	 Biochemical character	Os01g0754200	LOC_Os01g55040.1				GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0016021 - integral to membrane, GO:0000148 - 1,3-beta-glucan synthase complex		
8539	GSL4	OsGSL4, CalS7, OsCalS7	BETA-1,3-GLUCANASE ACTIVITY 4	Oryza sativa callose synthase 4, callose synthase 4			1	AP003445 (OJ1029_F04.6). CalS7 in Ge et al. 2024.	 Biochemical character	Os01g0533500	LOC_Os01g34930.1				GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0016021 - integral to membrane, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0000148 - 1,3-beta-glucan synthase complex		PO:0009066 - anther , PO:0025034 - leaf , PO:0009005 - root 
8540	GSL5	OsGSL5, OsSTA170, CalS5, OsCalS5	BETA-1,3-GLUCANASE ACTIVITY 5	Oryza sativa callose synthase 5, callose synthase 5, Glucan Synthase-Like 5		Osgsl5, Osgsl5-2, Osgsl5-3	6	a mature anther-preferentially expressed gene. GO:0110044: regulation of cell cycle switching, mitotic to meiotic cell cycle.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0182300	LOC_Os06g08380.1				GO:0051728 - cell cycle switching, mitotic to meiotic cell cycle, GO:0010383 - cell wall polysaccharide metabolic process, GO:0070592 - cell wall polysaccharide biosynthetic process, GO:0005886 - plasma membrane, GO:0009556 - microsporogenesis, GO:0009555 - pollen development, GO:0007140 - male meiosis, GO:0007129 - synapsis, GO:0009409 - response to cold, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0052543 - callose deposition in cell wall, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0016021 - integral to membrane, GO:0051445 - regulation of meiotic cell cycle	TO:0000729 - meiotic cell cycle trait, TO:0000455 - seed set percent, TO:0000303 - cold tolerance, TO:0000421 - pollen fertility, TO:0000639 - seed fertility	PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0025264 - anther locule , PO:0001008 - C callose wall formation in pollen mother cells stage 
8541	GSL6	OsGSL6, CalS3, OsCalS3	BETA-1,3-GLUCANASE ACTIVITY 6	Oryza sativa callose synthase 6, callose synthase 6			6	CalS3 in Ge et al. 2024.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0728800/Os06g0728902	LOC_Os06g51270.1				GO:0003843 - 1,3-beta-glucan synthase activity, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0051607 - defense response to virus, GO:0016021 - integral to membrane, GO:0006075 - 1,3-beta-glucan biosynthetic process	TO:0000148 - viral disease resistance	PO:0009066 - anther , PO:0009005 - root , PO:0025034 - leaf 
8542	GSL7	OsGSL7	BETA-1,3-GLUCANASE ACTIVITY 7	Oryza sativa callose synthase 7, callose synthase 7			2	AP004082 (OJ1149_C12.24).	 Biochemical character	Os02g0832400/Os02g0832500	LOC_Os02g58554.1, LOC_Os02g58560.3, LOC_Os02g58560.1				GO:0000148 - 1,3-beta-glucan synthase complex, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0016021 - integral to membrane, GO:0003843 - 1,3-beta-glucan synthase activity		PO:0025034 - leaf , PO:0009005 - root , PO:0009066 - anther 
8543	GSL8	OsGSL8, OsGSC, GSC, CRR1, OsCRR1, CalS9, OsCalS9	BETA-1,3-GLUCANASE ACTIVITY 8	"Oryza sativa callose synthase 8, callose synthase 8, \"1, 3-beta-glucan synthase component\", cannot reach the roof 1"		crr1	3	a protein homologous to the Arabidopsis callose synthases AtGSL8 and AtGSL10. CalS9 in Ge et al. 2024. GO:0035670: plant-type ovary development.	 Tolerance and resistance,  Biochemical character	Os03g0119500					GO:0009832 - plant-type cell wall biogenesis, GO:0016021 - integral to membrane, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0052543 - callose deposition in cell wall	TO:0000291 - carbohydrate content, TO:0000696 - starch content	PO:0009015 - portion of vascular tissue , PO:0005020 - vascular bundle , PO:0009005 - root , PO:0009066 - anther , PO:0025034 - leaf 
8544	GSL9	OsGSL9, CalS7-2, OsCalS7-2	BETA-1,3-GLUCANASE ACTIVITY 9	Oryza sativa callose synthase 9, callose synthase 9	CALLOSE SYNTHASE 9		1	CalS7-2 in Ge et al. 2024.	 Biochemical character	Os01g0533000/Os01g0533100	LOC_Os01g34880.1, LOC_Os01g34890.1, LOC_Os01g34900.1				GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0016021 - integral to membrane		PO:0009005 - root , PO:0025034 - leaf , PO:0009066 - anther 
8545	GSL10	OsGSL10, CalS3-2, OsCalS3-2	BETA-1,3-GLUCANASE ACTIVITY 10	Oryza sativa callose synthase 10, callose synthase 10			3	CalS3-2 in Ge et al. 2024.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0128100/Os03g0128200	LOC_Os03g03610.3, LOC_Os03g03610.2, LOC_Os03g03610.1				GO:0003843 - 1,3-beta-glucan synthase activity, GO:0016021 - integral to membrane, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance	PO:0025034 - leaf , PO:0009005 - root , PO:0009066 - anther 
8547	HSFA1	OsHsfA1, HsfA1, OsHSF13, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a	HEAT STRESS TRANSCRIPTION FACTOR A1	Heat stress transcription factor A1, Heat stress transcription factor A-1, Heat stress transcription factor 13, Heat stress transcription factor 3	HEAT STRESS TRANSCRIPTION FACTOR A1		3	AC120506. Q84T61. OsHSF13 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os03g0854500	LOC_Os03g63750.1				GO:0006950 - response to stress, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity		PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009047 - stem , PO:0009066 - anther , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009038 - palea , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0009089 - endosperm 
8548	HSFA2A	HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, OsHSF11, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e	HEAT STRESS TRANSCRIPTION FACTOR A2A	Heat stress transcription factor A2a, Heat stress transcription factor A-2a, Heat stress transcription factor 11, Heat stress transcription factor 4, Heat shock protein 41, Heat shock transcription factorA2	HEAT STRESS TRANSCRIPTION FACTOR A2a		3	AC092558. Q84MN7. OsHsfA2e in Lavinia et al. 2018. OsHSF11 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os03g0745000	LOC_Os03g53340.6, LOC_Os03g53340.5, LOC_Os03g53340.4, LOC_Os03g53340.3, LOC_Os03g53340.2, LOC_Os03g53340.1				GO:0006950 - response to stress, GO:0005829 - cytosol, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009408 - response to heat, GO:0006350 - transcription, GO:0005739 - mitochondrion, GO:0043565 - sequence-specific DNA binding	TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000429 - salt sensitivity	
8549	HSFA2B	HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, OsHSF18, HSF5, OsHSF5	HEAT STRESS TRANSCRIPTION FACTOR A2B	Heat stress transcription factor A2b, Heat stress transcription factor A-2b, Heat stress transcription factor 18, Heat stress transcription factor 5	HEAT STRESS TRANSCRIPTION FACTOR A2b		7	AP003826. Q6VBB2. AY344487. OsHSF18 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os07g0178600	LOC_Os07g08140.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0009628 - response to abiotic stimulus, GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0006350 - transcription	TO:0000168 - abiotic stress trait	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009066 - anther , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009038 - palea , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0009005 - root 
8550	HSFA2C	HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, OsHSF25, HSF6, OsHsfA6a, HsfA6a	HEAT STRESS TRANSCRIPTION FACTOR A2C	Heat stress transcription factor A2c, Heat stress transcription factor A-2c, Heat stress transcription factor 25, Heat stress transcription factor 6	HEAT STRESS TRANSCRIPTION FACTOR A2c		10	AC027658. Q338B0. AY344488. OsHSF6 in Liu et al. 2005. OsHsfA6a in Lavinia et al. 2018. OsHSF25 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os10g0419300	LOC_Os10g28340.5, LOC_Os10g28340.3, LOC_Os10g28340.2, LOC_Os10g28340.1				GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress	TO:0000168 - abiotic stress trait	PO:0009038 - palea , PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0020104 - leaf sheath , PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0009047 - stem , PO:0009066 - anther , PO:0009030 - carpel , PO:0009037 - lemma 
8551	HSFA2D	HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, OsHSF8, HSF8, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b, OsHsf2d, Hsf2d	HEAT STRESS TRANSCRIPTION FACTOR A2D	Heat stress transcription factor A2d, Heat stress transcription factor A-2d, Heat stress transcription factor 8, Heat stress transcription factor 7	HEAT STRESS TRANSCRIPTION FACTOR A2d	hsfa2d	3	AC105729. Q8H7Y6. AY344489. OsHsfA6b in Lavinia et al. 2018. OsHSF8 in Muthuramalingam et al. 2019. OsHSF7 in Qiu et al. 2023. GO:2000012: regulation of auxin polar transport.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os03g0161900	LOC_Os03g06630.1, LOC_Os03g06630.2				GO:0043565 - sequence-specific DNA binding, GO:0009926 - auxin polar transport, GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0009629 - response to gravity, GO:0005739 - mitochondrion, GO:0009734 - auxin mediated signaling pathway, GO:0006350 - transcription, GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0048571 - long-day photoperiodism, GO:0006986 - response to unfolded protein, GO:0009735 - response to cytokinin stimulus, GO:0005829 - cytosol, GO:0006950 - response to stress	TO:0000259 - heat tolerance, TO:0000075 - light sensitivity, TO:0000167 - cytokinin sensitivity, TO:0002693 - gravity response trait, TO:0000567 - tiller angle, TO:0000207 - plant height	
8552	HSFA2E	HSfA2e, OsHsfA2e, OsHsf-12, OsHSF12, HSF12, OsHsfA2a, HsfA2a	HEAT STRESS TRANSCRIPTION FACTOR A2E	Heat stress transcription factor A2e, Heat stress transcription factor A-2e, Heat stress transcription factor 12	HEAT STRESS TRANSCRIPTION FACTOR A2e		3	AC092076. Q6F388. OsHsfA2a in Lavania et al. 2018. OsHSF12 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os03g0795900	LOC_Os03g58160.2, LOC_Os03g58160.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0005829 - cytosol		
8553	HSFA3	HSfA3, OsHsfA3, OsHsf-07, HSF07, OsHSF7, HSF7, DLN57, OsDLN57	HEAT STRESS TRANSCRIPTION FACTOR A3	Heat stress transcription factor A3, Heat stress transcription factor A-3, Heat stress transcription factor 7, DLN repressor 57, DLN motif protein 57	HEAT STRESS TRANSCRIPTION FACTOR A3		2	AP004777. Q6H6Q7. OsHSF7 in Muthuramalingam et al. 2019. : GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os02g0527300	LOC_Os02g32590.2, LOC_Os02g32590.1				GO:0003700 - transcription factor activity, GO:0005829 - cytosol, GO:0009738 - abscisic acid mediated signaling, GO:0046466 - membrane lipid catabolic process, GO:0009628 - response to abiotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0010967 - regulation of polyamine biosynthetic process, GO:0009409 - response to cold, GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0030104 - water homeostasis, GO:0006950 - response to stress	TO:0000605 - hydrogen peroxide content, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0002667 - abscisic acid content	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0025034 - leaf 
8554	HSFA4A	OsHsfA4a, OsHsf-04, HSFA4B, HSF04, OsHSF4, HSF4, HSF9, OsHsfA4b, OsHSF9	HEAT STRESS TRANSCRIPTION FACTOR A4a	Heat stress transcription factor A4a, Heat stress transcription factor A-4b, Heat stress transcription factor 4, heat shock transcription factor 9	HEAT STRESS TRANSCRIPTION FACTOR A4a		1	AP003076. Q94J16. AY344491. OsHSF4 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os01g0749300	LOC_Os01g54550.1				GO:0005829 - cytosol, GO:0043565 - sequence-specific DNA binding, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription		
8556	HSFA5	HSfA5, OsHsfA5, OsHsf-06, HSF06, OsHSF6, HSF6	HEAT STRESS TRANSCRIPTION FACTOR A5	Heat stress transcription factor A5, Heat stress transcription factor A-5, Heat stress transcription factor 6	HEAT STRESS TRANSCRIPTION FACTOR A5		2	AP004999. Q6K6S5. OsHSF6 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os02g0496100	LOC_Os02g29340.1				GO:0005737 - cytoplasm, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0005829 - cytosol, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding		
8557	HSFA6	HSfA6, OsHsfA6, OsHsf-17, HSF17, OsHSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b	HEAT STRESS TRANSCRIPTION FACTOR A6	Heat stress transcription factor A6, Putative heat stress transcription factor A-6a, Heat stress transcription factor 17	HEAT STRESS TRANSCRIPTION FACTOR A6		6	AP005456. Q5Z6A4. OsHsfA7b in Lavinia et al. 2018. OsHSF17 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os06g0565200	LOC_Os06g36930.1				GO:0009628 - response to abiotic stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0005829 - cytosol	TO:0000168 - abiotic stress trait	PO:0025034 - leaf , PO:0009089 - endosperm , PO:0020104 - leaf sheath , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0009005 - root 
8558	HSFA7	OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsHSF1, HSF1, OsEnS-9, OsHsfA7a, HsfA7a	HEAT STRESS TRANSCRIPTION FACTOR A7	Heat stress transcription factor A7, Heat stress transcription factor A-6a, Heat stress transcription factor 1, endosperm-specific gene 9	HEAT STRESS TRANSCRIPTION FACTOR A7		1	Q657C0. AP003308. Heat shock transcription factor HSF8-like. OsHsfA7a in Lavinia et al. 2018. OsHSF1 in Muthuramalingam et al. 2019. TO:0001051: root hair density. TO:0020103: adventitious root length.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0571300	LOC_Os01g39020.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0005739 - mitochondrion	TO:0000227 - root length, TO:0000168 - abiotic stress trait, TO:0000306 - root thickness, TO:0002665 - root hair length, TO:0001012 - lateral root length, TO:0001013 - lateral root number, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0009089 - endosperm 
8559	HSFA9	HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, OsHSF9, HSF9, HSF8, OsHsfA8, HsfA8	HEAT STRESS TRANSCRIPTION FACTOR A9	Heat stress transcription factor A9, Heat stress transcription factor A-9, Heat stress transcription factor 9, Heat stress transcription factor 8	HEAT STRESS TRANSCRIPTION FACTOR A9		3	AC107226. Q10PR4. AJ575240. OsHsfA8 in Lavinia et al. 2018. OsHSF9 in Muthuramalingam et al. 2019.	 Seed,  Other,  Tolerance and resistance - Stress tolerance	Os03g0224700	LOC_Os03g12370.4, LOC_Os03g12370.3, LOC_Os03g12370.2, LOC_Os03g12370.1				GO:0005829 - cytosol, GO:0006350 - transcription, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
8560	HSFB1	HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, OsHSF23, TBF1	HEAT STRESS TRANSCRIPTION FACTOR B1	Heat stress transcription factor B1, Heat stress transcription factor B-1, Heat stress transcription factor 23	HEAT STRESS TRANSCRIPTION FACTOR B1		9	AP006057. Q67TP9. HQ858829. HSF-BDB transcription factor. OsHSF23 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os09g0456800	LOC_Os09g28354.1				GO:0005829 - cytosol, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009725 - response to hormone stimulus, GO:0009814 - defense response, incompatible interaction, GO:0009628 - response to abiotic stimulus, GO:0034052 - positive regulation of plant-type hypersensitive response, GO:0003700 - transcription factor activity, GO:0030912 - response to deep water, GO:0006350 - transcription, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000401 - plant growth hormone sensitivity, TO:0000168 - abiotic stress trait, TO:0000524 - submergence tolerance	PO:0009009 - plant embryo , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root , PO:0009072 - plant ovary , PO:0009089 - endosperm , PO:0009049 - inflorescence 
8561	HSFB2A	HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14, OsHSF14	HEAT STRESS TRANSCRIPTION FACTOR B2A	Heat stress transcription factor B2a, Heat stress transcription factor B-2a, Heat stress transcription factor 14, Heat stress transcription factor 1	HEAT STRESS TRANSCRIPTION FACTOR B2a		4	AL663003. Q7XRX3. AY344483. OsHSF14 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os04g0568700	LOC_Os04g48030.1				GO:0003700 - transcription factor activity, GO:0009628 - response to abiotic stimulus, GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent		PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009072 - plant ovary 
8562	HSFB2B	HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21, OsHSF21, OsHSF7	HEAT STRESS TRANSCRIPTION FACTOR B2B	Heat stress transcription factor B2b, Heat stress transcription factor B-2b, Heat stress transcription factor 21, Heat stress transcription factor 2, rice HSF7 homolog	HEAT STRESS TRANSCRIPTION FACTOR B2b		8	AP004163. Q6Z9C8. OsHSF21 in Muthuramalingam et al. 2019. OsHSF7 in Teramura et al. 2021.	 Tolerance and resistance - Stress tolerance	Os08g0546800	LOC_Os08g43334.2, LOC_Os08g43334.1				GO:0043565 - sequence-specific DNA binding, GO:0006350 - transcription, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009411 - response to UV	TO:0000168 - abiotic stress trait, TO:0000160 - UV light sensitivity	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009072 - plant ovary , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009009 - plant embryo 
8563	HSFB2C	HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24	HEAT STRESS TRANSCRIPTION FACTOR B2C	Heat stress transcription factor B2c, Heat stress transcription factor B-2c, Heat stress transcription factor 24	HEAT STRESS TRANSCRIPTION FACTOR B2c		9	AP005681. Q652B0. OsHSF24 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os09g0526600	LOC_Os09g35790.3, LOC_Os09g35790.1, LOC_Os09g35790.2				GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus, GO:0003700 - transcription factor activity, GO:0030912 - response to deep water, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0006950 - response to stress, GO:0043565 - sequence-specific DNA binding, GO:0046686 - response to cadmium ion	TO:0000259 - heat tolerance, TO:0000168 - abiotic stress trait, TO:0000524 - submergence tolerance	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009009 - plant embryo , PO:0009072 - plant ovary 
8564	HSFB4A	HSfB4a, OsHsfB4a, OsHsf-20, HSF20, OsHSF20	HEAT STRESS TRANSCRIPTION FACTOR B4A	Heat stress transcription factor B4a, Putative heat stress transcription factor B-4a, Heat stress transcription factor 20	HEAT STRESS TRANSCRIPTION FACTOR B4a		8	AP004693. Q6Z9R8. OsHSF20 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os08g0471000	LOC_Os08g36700.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0030912 - response to deep water, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding	TO:0000524 - submergence tolerance	
8565	HSFB4B	HSFB4b, OsHSFB4b, OsHsf-19, OsHSF19, rHsf12, OsHSF12, HSF12, HSF19	HEAT STRESS TRANSCRIPTION FACTOR B4B	Heat stress transcription factor B4b, Heat stress transcription factor B-4b, Heat stress transcription factor 19, Heat stress transcription factor 12	HEAT STRESS TRANSCRIPTION FACTOR B4b		7	AP005292. Q7XHZ0. AY344494. OsHSF12 in Liu et al. 2005. OsHSF19 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os07g0640900	LOC_Os07g44690.1				GO:0009409 - response to cold, GO:0005737 - cytoplasm, GO:0005739 - mitochondrion, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress	TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009089 - endosperm , PO:0009030 - carpel , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009072 - plant ovary , PO:0009009 - plant embryo 
8566	HSFB4C	HSfB4c, OsHsfB4c, OsHsf-22, HSF22, OsHSF22	HEAT STRESS TRANSCRIPTION FACTOR B4C	Heat stress transcription factor B4c, Heat stress transcription factor B-4c, Heat stress transcription factor 22	HEAT STRESS TRANSCRIPTION FACTOR B4c		9	AP005655. Q67U94. OsHSF22 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os09g0455200	LOC_Os09g28200.1				GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus, GO:0005829 - cytosol, GO:0006350 - transcription	TO:0000168 - abiotic stress trait	PO:0025034 - leaf , PO:0009005 - root , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009030 - carpel 
8567	HSFB4D	OsHsfB4d, HSfB4d, OsHsf-10, HSF10, OsHSF10	HEAT STRESS TRANSCRIPTION FACTOR B4D	Heat stress transcription factor B4d, HEAT STRESS TRANSCRIPTION FACTOR B4d, Heat stress transcription factor 10	HEAT STRESS TRANSCRIPTION FACTOR B4d		3	AC125784. Q10KX8. OsHSF10 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0366800	LOC_Os03g25120.1				GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009628 - response to abiotic stimulus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000168 - abiotic stress trait, TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance	PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root 
8568	HSFC1A	HSfC1a, OsHsfC1a, OsHsf-02, OsHSF2, HSF2, rHsf13, HSF02, HSF13	HEAT STRESS TRANSCRIPTION FACTOR C1A	Heat stress transcription factor C1a, Heat stress transcription factor C-1a, Heat stress transcription factor 2, Heat stress transcription factor 13	HEAT STRESS TRANSCRIPTION FACTOR C1a		1	AP002744. Q6VBA4. OsHSF2 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os01g0625300	LOC_Os01g43590.2, LOC_Os01g43590.1				GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0005739 - mitochondrion, GO:0006355 - regulation of transcription, DNA-dependent		
8569	HSFC1B	OsHsfC1b, HsfC1b, HSF03, OsHsf-03, OsHSF3, HSF3, HSF11, rHsf11	HEAT STRESS TRANSCRIPTION FACTOR C1b	Heat stress transcription factor C1b, Heat stress transcription factor C-1b, Heat stress transcription factor 3	HEAT STRESS TRANSCRIPTION FACTOR C1b	hsfc1b	1	AP003309. Q942D6. OsHSF3 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os01g0733200	LOC_Os01g53220.1				GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005739 - mitochondrion, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0006350 - transcription	TO:0000168 - abiotic stress trait	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009072 - plant ovary , PO:0009089 - endosperm , PO:0009009 - plant embryo 
8570	HSFC2A	HSfC2a, OsHsfC2a, OsHsf-05, HSF05, OsHSF5, HSF5	HEAT STRESS TRANSCRIPTION FACTOR C2A	Heat stress transcription factor C2a, Heat stress transcription factor C-2a, Heat stress transcription factor 5	HEAT STRESS TRANSCRIPTION FACTOR C2a		2	AP004070. Q6EUG4. OsHSF5 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os02g0232000	LOC_Os02g13800.1				GO:0006950 - response to stress, GO:0003700 - transcription factor activity, GO:0009628 - response to abiotic stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0030912 - response to deep water	TO:0000168 - abiotic stress trait, TO:0000524 - submergence tolerance	PO:0009089 - endosperm , PO:0009049 - inflorescence , PO:0009005 - root , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009009 - plant embryo , PO:0009072 - plant ovary 
8571	HSFC2B	HSfC2b, OsHsfC2b, OsHsf-16, HSF16, OsHSF16	HEAT STRESS TRANSCRIPTION FACTOR C2B	Heat stress transcription factor C2b, Heat stress transcription factor C-2b, Heat stress transcription factor 16	HEAT STRESS TRANSCRIPTION FACTOR C2b		6	AP003682. Q0DBL6.  OsHSF16 in Muthuramalingam et al. 2019.	 Tolerance and resistance - Stress tolerance	Os06g0553100	LOC_Os06g35960.1				GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0031667 - response to nutrient levels, GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0006350 - transcription, GO:0005739 - mitochondrion	TO:0000168 - abiotic stress trait, TO:0000102 - phosphorus sensitivity	PO:0009072 - plant ovary , PO:0009089 - endosperm , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009049 - inflorescence 
8572	C3H1	OsC3H1, OsEnS-1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1	Zinc finger CCCH domain-containing protein 1, endosperm-specific gene 1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1		1	LOC_Os01g07930. Q5VR07.	 Other	Os01g0174600	LOC_Os01g07930.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8573	C3H10	OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 10	Zinc finger CCCH domain-containing protein 10, Tandem zinc finger protein 8, endosperm-specific gene 12	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 10		1	LOC_Os01g53650. Q94JI5.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0738400	LOC_Os01g53650.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0003677 - DNA binding		
8574	C3H11	OsC3H11, DLN25, OsDLN25	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 11	Zinc finger CCCH domain-containing protein 11, DLN repressor 25, DLN motif protein 25	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 11		1	Q0JHZ2.	 Other	Os01g0834700	LOC_Os01g61830.1				GO:0005739 - mitochondrion, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8575	C3H12	OsC3H12, OsZFP12, ZFP12	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12	Zinc finger CCCH domain-containing protein 12, Zinc finger CCCH domain-containing protein ZFN-like 2	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12		1	Q5JLB5. JF799943.	 Tolerance and resistance - Disease resistance,  Other	Os01g0917400	LOC_Os01g68860.1, LOC_Os01g68860.2, LOC_Os01g68860.3				GO:0051607 - defense response to virus, GO:0008270 - zinc ion binding, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0003677 - DNA binding	TO:0000615 - abscisic acid sensitivity, TO:0000148 - viral disease resistance	
8576	C3H13 	OsC3H13, BIP105, DLN42, DLN42a, DLN42b, OsDLN42, OsDLN42a, OsDLN42b	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13	Zinc finger CCCH domain-containing protein 13, BRI1-kinase domain-interacting protein 105, brassinosteroid receptor kinase (BRI1)-interacting protein 105, BRI1-interacting protein 105, brassinosteroid receptor kinase-interacting protein 105, DLN repressor 42, DLN motif protein 42	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13		2	Q6H7U2. AB117992.	 Other	Os02g0161200	LOC_Os02g06584.4, LOC_Os02g06584.3, LOC_Os02g06584.2				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8577	C3H14	OsC3H14, OsKH9, KH9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14	Zinc finger CCCH domain-containing protein 14, K-homologous family protein 9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14		2	Q7F8R0.	 Other	Os02g0194200	LOC_Os02g10080.1, LOC_Os02g10080.2				GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009030 - carpel , PO:0009066 - anther , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0009047 - stem , PO:0009005 - root , PO:0009037 - lemma , PO:0009038 - palea , PO:0009072 - plant ovary 
8578	C3H15	OsC3H15, OsRFPHC-3, OsRING268, RING268	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15	Zinc finger CCCH domain-containing protein 15, RING finger protein OsRFPHC-3, RING-HC protein 3, RING-type E3 ubiquitin ligase 268	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15		2	Os02g0301000. Q6K4V3.	 Other,  Tolerance and resistance - Stress tolerance	Os02g0301000	LOC_Os02g19804.1				GO:0008270 - zinc ion binding, GO:0005515 - protein binding, GO:0003677 - DNA binding	TO:0000168 - abiotic stress trait	
8579	C3H16	OsC3H16	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16	Zinc finger CCCH domain-containing protein 16	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16		2	Os02g0557500. Q6YVX9.	 Other	Os02g0557500	LOC_Os02g35150.1				GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003723 - RNA binding		
8580	C3H17	OsC3H17, OsWD40-49	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 17	Zinc finger CCCH domain-containing protein 17	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 17		2	Q0DYP5.	 Other	Os02g0677700	LOC_Os02g45480.1, LOC_Os02g45480.2, LOC_Os02g45480.3, LOC_Os02g45480.4				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8581	C3H18	OsC3H18	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18	Zinc finger CCCH domain-containing protein 18	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18		2	Os02g0793000, Q6K687.	 Other	Os02g0793000	LOC_Os02g55000.1				GO:0005622 - intracellular, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8582	C3H19	OsC3H19	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19	Zinc finger CCCH domain-containing protein 19	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19		2	Os02g0831100. Q6K977.	 Other	Os02g0831100	LOC_Os02g58440.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8584	EHD4	OsC3H20, C3H20, Ehd4, DLN73, DLN73a, DLN73b, OsDLN73, OsDLN73a, OsDLN73b	EARLY HEADING DATE 4	Zinc finger CCCH domain-containing protein 20, Early heading date 4, DLN repressor 73, DLN motif protein 73	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	ehd4	3	Q0DVU4. JQ828863. 	 Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os03g0112700	LOC_Os03g02160.3, LOC_Os03g02160.2, LOC_Os03g02160.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:2000028 - regulation of photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0009266 - response to temperature stimulus, GO:0010378 - temperature compensation of the circadian clock	TO:0000432 - temperature response trait, TO:0002616 - flowering time	
8585	C3H21	OsC3H21	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21	zinc finger CCCH domain-containing protein 21	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21		3	Q10MN8. GO:0061158: 3'-UTR-mediated mRNA destabilization.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0301500	LOC_Os03g18950.1				GO:0003730 - mRNA 3'-UTR binding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0046872 - metal ion binding, GO:0046688 - response to copper ion, GO:0005829 - cytosol	TO:0000021 - copper sensitivity	
8586	C3H22	OsC3H22	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22	Zinc finger CCCH domain-containing protein 22	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22		3	Os03g0328900. Q10M00.	 Other	Os03g0328900	LOC_Os03g21140.1, LOC_Os03g21140.2				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding		
8587	C3H23	OsC3H23	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 23	Zinc finger CCCH domain-containing protein 23	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 23		3	Q10LZ9.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0329200	LOC_Os03g21160.1, LOC_Os03g21160.2				GO:0003723 - RNA binding, GO:0003677 - DNA binding, GO:0030912 - response to deep water, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding	TO:0000524 - submergence tolerance	
8588	C3H24	OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 24	Zinc finger CCCH domain-containing protein 24, Tandem zinc finger protein 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 24		3	LOC_Os03g49170.1 Q10EL1.	 Tolerance and resistance - Disease resistance,  Other	Os03g0698800	LOC_Os03g49170.1, LOC_Os03g49170.3				GO:0051607 - defense response to virus, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	
8589	C3H25	OsC3H25	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 25	Zinc finger CCCH domain-containing protein 25	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 25		3	Os03g0826400. Q10B98.	 Other	Os03g0826400	LOC_Os03g61110.1				GO:0008270 - zinc ion binding, GO:0003723 - RNA binding, GO:0000166 - nucleotide binding, GO:0003677 - DNA binding		
8590	C3H26	OsC3H26	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26	tRNA-dihydrouridine synthase 3-like, Zinc finger CCCH domain-containing protein 26	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26		4	Zinc finger CCCH domain-containing protein 26. Os04g0117600. EC=1.-.-.- Q7XT07.	 Other	Os04g0117600	LOC_Os04g02730.1				GO:0017150 - tRNA dihydrouridine synthase activity, GO:0050660 - FAD binding, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0008033 - tRNA processing, GO:0055114 - oxidation reduction, GO:0009536 - plastid		
8591	C3H27	OsC3H27	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27	Zinc finger CCCH domain-containing protein 27	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27		4	Os04g0394300. Q0JDM0.	 Other	Os04g0394300	LOC_Os04g32340.1				GO:0003677 - DNA binding, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding		
8592	C3H28	OsC3H28, DLN112, DLN112a, DLN112b, OsDLN112, OsDLN112a, OsDLN112b	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 28	Zinc finger CCCH domain-containing protein 28, DLN repressor 112, DLN motif protein 112	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 28		4	Q0JD07.	 Other	Os04g0438700	LOC_Os04g35800.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8593	C3H29	OsC3H29, OsCCCH-Zn-9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29	Putative zinc finger CCCH domain-containing protein 29	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29		4	LOC_Os04g41060. Q7XSB2.	 Other	Os04g0487550	LOC_Os04g41060.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8594	C3H3	OsC3H3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3	Zinc finger CCCH domain-containing protein 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3		1	Q0JP11.	 Other	Os01g0252200	LOC_Os01g14870.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8595	C3H30	OsC3H30	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 30	Zinc finger CCCH domain-containing protein 30	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 30		4	Os04g0663200. Q7XM16.	 Other	Os04g0663200	LOC_Os04g56750.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8596	C3H31	OsC3H31, OsKH17, KH17	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 31	Zinc finger CCCH domain-containing protein 31, K-homologous family protein 17	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 31		4	Q7XPK1.	 Other	Os04g0665700	LOC_Os04g57010.1, LOC_Os04g57010.2				GO:0005737 - cytoplasm, GO:0003677 - DNA binding, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding		
8597	C3H32	OsC3H32	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32	Zinc finger CCCH domain-containing protein 32	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32		4	Q0J952. HQ858841. C3H-related transcription factor.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0671800	LOC_Os04g57600.1				GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0008270 - zinc ion binding, GO:0009628 - response to abiotic stimulus, GO:0003677 - DNA binding	TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait	
8598	C3H33	OsC3H33, OsTZF5, TZF5, OsCCCH-Zn-5, CCCH-Zn-5	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33	Zinc finger CCCH domain-containing protein 33, Tandem zinc finger protein 5	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33		5	Q688R3. GO:0099568: cytoplasmic region. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0128200	LOC_Os05g03760.1				GO:0030912 - response to deep water, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0001016 - relative chlorophyll content, TO:0000136 - relative water content, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000396 - grain yield	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root 
8599	C3H34	OsC3H34, DLN132, OsDLN132	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 34	Zinc finger CCCH domain-containing protein 34, DLN repressor 132, DLN motif protein 132	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 34		5	Q6AT25.	 Other	Os05g0176400	LOC_Os05g08400.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8600	C3H35	OsC3H35, OsTZF1, OsCCCH-Zn-3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 35	Zinc finger CCCH domain-containing protein 35, Protein DELAY OF THE ONSET OF SENESCENCE-like, Tandem zinc finger protein 1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 35		5	Q6L4N4.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0195200	LOC_Os05g10670.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8601	C3H36	OsC3H36	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 36	Zinc finger CCCH domain-containing protein 36	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 36		5	Os05g0497500. Q75K81.	 Other	Os05g0497500	LOC_Os05g41790.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8602	C3H37	OsC3H37, OsTZF7, OsCCCH-Zn-1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37	Zinc finger CCCH domain-containing protein 37, Tandem zinc finger protein 7	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37		5	Os05g0525900. Q65X92.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0525900	LOC_Os05g45020.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8603	C3H38  	OsC3H38, U2AF35B, OsU2AF35b	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38	Splicing factor U2af small subunit B, U2 small nuclear ribonucleoprotein auxiliary factor small subunit B, U2 snRNP auxiliary factor small subunit B, U2 auxiliary factor 35 kDa subunit B, Zinc finger CCCH domain-containing protein 38, U2 snRNP auxiliary factor small subunit B, U2 auxiliary factor 35 kDa subunit B, U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35b	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38		5	Q6AUG0. Y18348.	 Other	Os05g0564200	LOC_Os05g48960.1, LOC_Os05g48960.2, LOC_Os05g48960.3, LOC_Os05g48960.4				GO:0003677 - DNA binding, GO:0003723 - RNA binding, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0005634 - nucleus		
8604	C3H39	OsC3H39	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	Zinc finger CCCH domain-containing protein 39	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39		5	Os05g0576300. Q6L5G1.	 Other	Os05g0576300	LOC_Os05g50080.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8605	C3H4	OsC3H4, OsCPSF30-L1, CPSF30-L1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4	Zinc finger CCCH domain-containing protein 4, 30 kDa subunit of cleavage and polyadenylation specificity factor longer isoform 1, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 longer isoform 1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4		1	EC=3.6.1.- Q1EHT7. N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0256800	LOC_Os01g15300.1, LOC_Os01g15300.2				GO:0003729 - mRNA binding, GO:0003723 - RNA binding, GO:0016887 - ATPase activity, GO:0004386 - helicase activity, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0046872 - metal ion binding, GO:0009611 - response to wounding, GO:0009269 - response to desiccation, GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0008026 - ATP-dependent helicase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005730 - nucleolus	TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance	
8606	C3H40	OsC3H40, UCIP14, OsUCIP14	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40	Zinc finger CCCH domain-containing protein 40, OsUBC26 Interact Protein 14	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40		6	Q5SNN4. RNA-binding motif protein.	 Other	Os06g0170500	LOC_Os06g07350.1				GO:0000166 - nucleotide binding, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8607	C3H41	OsC3H41, MKRN, OsRING387, RING387, OsCPSF30-L3, CPSF30-L3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41	E3 ubiquitin-protein ligase makorin, Zinc finger CCCH domain-containing protein 41, RING-type E3 ubiquitin ligase 387, 30 kDa subunit of cleavage and polyadenylation specificity factor longer isoform 3, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 longer isoform 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41		6	EC=6.3.2.- Q5ZA07. OsRFP (RING finger protein). N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os06g0318700	LOC_Os06g21390.1, LOC_Os06g21390.2, LOC_Os06g21390.3, LOC_Os06g21390.4				GO:0019941 - modification-dependent protein catabolic process, GO:0003677 - DNA binding, GO:0005515 - protein binding, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity, GO:0046685 - response to arsenic, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0046872 - metal ion binding, GO:0000209 - protein polyubiquitination, GO:0016567 - protein ubiquitination	TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease	
8608	C3H42	OsC3H42	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 42	Zinc finger CCCH domain-containing protein 42	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 42		6	Os06g0519400. Q0DBW8.	 Other	Os06g0519400	LOC_Os06g32720.1				GO:0008270 - zinc ion binding, GO:0009536 - plastid, GO:0003677 - DNA binding		
8609	C3H43	OsC3H43	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43	Zinc finger CCCH domain-containing protein 43	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43		6	Os06g0520600. Q5Z5Q3.	 Other	Os06g0520600	LOC_Os06g32860.1, LOC_Os06g32860.2				GO:0003677 - DNA binding, GO:0016070 - RNA metabolic process, GO:0008270 - zinc ion binding, GO:0005515 - protein binding		
8610	C3H44	OsC3H44, OsKH21, KH21	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44	Zinc finger CCCH domain-containing protein 44, K-homologous family protein 21	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44		6	Q69XQ3.	 Other	Os06g0618100	LOC_Os06g41384.1, LOC_Os06g41384.2				GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8611	C3H45	OsC3H45, OsCPSF30-L4, CPSF30-L4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45	Zinc finger CCCH domain-containing protein 45, 30 kDa subunit of cleavage and polyadenylation specificity factor longer isoform 4, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 longer isoform 4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45		6	Q0DA50. N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. 	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0677700	LOC_Os06g46400.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0009611 - response to wounding, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005654 - nucleoplasm, GO:0046872 - metal ion binding, GO:0003729 - mRNA binding, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome	TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000315 - bacterial disease resistance, TO:0000074 - blast disease	
8612	 LIC	OsC3H46, C3H46, OsLIC, OsFLA6, FLA6	LEAF AND TILLER ANGLE INCREASED CONTROLLER	Zinc finger CCCH domain-containing protein 46, LEAF and TILLER ANGLE INCREASED CONTROLLER, Flag leaf angle 6	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 46	lic-1, lic-2, OsFLA6GG, OsFLA6AA	6	Q5Z807. OsLIC is a negative regulator of the BR response. OsLIC is epistatic to d2-1, while d61-1 is epistatic to OsLIC. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Other,  Vegetative organ - Culm	Os06g0704300	LOC_Os06g49080.1				GO:0009742 - brassinosteroid mediated signaling, GO:0005739 - mitochondrion, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding	TO:0000207 - plant height, TO:0000124 - flag leaf angle, TO:0000206 - leaf angle, TO:0000567 - tiller angle, TO:0002677 - brassinosteroid sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000445 - seed number	
8613	C3H47	OsC3H47, OsCCCH-Zn-10	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 47	Zinc finger CCCH domain-containing protein 47	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 47		7	Q8GW05.	 Other	Os07g0138400	LOC_Os07g04580.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8614	C3H48	OsC3H48	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48	Putative zinc finger CCCH domain-containing protein 48	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48		7	Os07g0139000. Q8GVZ8.	 Other	Os07g0139000	LOC_Os07g04650.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8615	C3H49	OsC3H49	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49	Zinc finger CCCH domain-containing protein 49	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49		7	Os07g0281000. Q6Z358.	 Other	Os07g0281000	LOC_Os07g18050.1				GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0003723 - RNA binding, GO:0003677 - DNA binding		
8616	C3H5	OsC3H5	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 5	Zinc finger CCCH domain-containing protein 5, Zinc finger CCCH domain-containing protein ZFN-like 3	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 5		1	Os01g0257400. Q5NAV3.	 Other	Os01g0257400	LOC_Os01g15350.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005634 - nucleus		
8617	C3H50	OsC3H50, OsTZF6, OsCCCH-Zn-6, DLN188, OsDLN188	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 50	Zinc finger CCCH domain-containing protein 50, Protein ZF, Tandem zinc finger protein 6, DLN repressor 188, DLN motif protein 188	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 50		7	AJ575241. Q84SL2.	 Tolerance and resistance - Stress tolerance,  Other,  Seed	Os07g0568300	LOC_Os07g38090.2, LOC_Os07g38090.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
8618	C3H51	OsC3H51	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 51	Putative zinc finger CCCH domain-containing protein 51	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 51		7	Os07g0583300. Q84ZT0.	 Other	Os07g0583300	LOC_Os07g39440.1				GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003677 - DNA binding, GO:0003723 - RNA binding		
8619	C3H53	OsC3H53	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53	Zinc finger CCCH domain-containing protein 53	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53		7	Os07g0682400. Q0D3J9.	 Other	Os07g0682400	LOC_Os07g48410.1, LOC_Os07g48410.2				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding		
8620	C3H54	OsC3H54	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54	Zinc finger CCCH domain-containing protein 54	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54		8	Q6ZK57.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0126700	LOC_Os08g03310.6, LOC_Os08g03310.5, LOC_Os08g03310.4, LOC_Os08g03310.1, LOC_Os08g03310.2, LOC_Os08g03310.3				GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0010378 - temperature compensation of the circadian clock, GO:0009266 - response to temperature stimulus, GO:0007623 - circadian rhythm, GO:0003677 - DNA binding	TO:0000432 - temperature response trait	
8621	C3H55	OsC3H55	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55	Zinc finger CCCH domain-containing protein 55	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55		8	Os08g0135800. Q6YYC0.	 Other	Os08g0135800	LOC_Os08g04170.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8622	C3H56	OsC3H56	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56	Zinc finger CCCH domain-containing protein 56	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56		8	Os08g0159800. Q84UQ3.	 Other	Os08g0159800	LOC_Os08g06330.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8623	C3H57	OsC3H57	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 57	Putative zinc finger CCCH domain-containing protein 57	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 57		8	Os08g0491700. A3BUD2.	 Other	Os08g0491700	LOC_Os08g38370.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8624	C3H58	OsC3H58	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58	Putative zinc finger CCCH domain-containing protein 58	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58		9	Os09g0305900. Q69KP0.	 Other	Os09g0305900	LOC_Os09g13530.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8625	C3H59	OsC3H59	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 59	Zinc finger CCCH domain-containing protein 59	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 59		9	Os09g0364000. Q69NK8.	 Other	Os09g0364000	LOC_Os09g19940.1, LOC_Os09g19940.2				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0003824 - catalytic activity		
8626	C3H6	OsC3H6	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6	Zinc finger CCCH domain-containing protein 6, Zinc finger CCCH domain-containing protein ZFN-like 1	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6		1	Os01g0258700. Q5NAW2.	 Other	Os01g0258700	LOC_Os01g15460.1, LOC_Os01g15460.2, LOC_Os01g15460.3				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus		
8627	C3H60 	OsC3H60, U2AF35a, U2AF35A, OsU2AF35a	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 60	"Splicing factor U2af small subunit A, U2 snRNP auxiliary factor small subunit A, U2 auxiliary factor 35 kDa subunit A, Zinc finger CCCH domain-containing protein 60, \"U2 snRNP auxiliary factor, small subunit\", U2 small nuclear ribonucleoprotein auxiliary factor small subunit A, U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35a"	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 60		9	U2 small nuclear ribonucleoprotein auxiliary factor small subunit A.  Y18349. Q9ZQW8.	 Other	Os09g0491756	LOC_Os09g31482.1, LOC_Os09g31482.3				GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
8628	C3H62	OsC3H62	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62	Zinc finger CCCH domain-containing protein 62	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62		10	Os10g0391300. Q338N2.	 Other	Os10g0391300	LOC_Os10g25220.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8629	C3H63	OsC3H63	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 63	Zinc finger CCCH domain-containing protein 63	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 63		11	Os11g0472000. Q2R4J4.	 Other	Os11g0472000	LOC_Os11g28270.1, LOC_Os11g28270.2, LOC_Os11g28270.3				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8630	C3H65	OsC3H65, DLN256, OsDLN256	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 65	Zinc finger CCCH domain-containing protein 65, DLN repressor 256, DLN motif protein 256	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 65		12	Q2QTY2.	 Other	Os12g0278800	LOC_Os12g18120.4, LOC_Os12g18120.2, LOC_Os12g18120.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
8631	C3H66	OsC3H66	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66	Zinc finger CCCH domain-containing protein 66	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66		12	Os12g0405100. Q2QT65.	 Other	Os12g0405100	LOC_Os12g21700.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8632	C3H67	OsC3H67, OsTZF4, OsCCCH-Zn-7	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 67	Zinc finger CCCH domain-containing protein 67, Tandem zinc finger protein 4	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 67		12	Os12g0515500. Q2QPW2.	 Other	Os12g0515500	LOC_Os12g33090.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8633	C3H7	OsC3H7, DLN12, OsDLN12, OsCPSF30-L2, CPSF30-L2	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7	Zinc finger CCCH domain-containing protein 7, DLN repressor 12, DLN motif protein 12, 30 kDa subunit of cleavage and polyadenylation specificity factor longer isoform 2, CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30 longer isoform 2	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7		1	Q657B3. N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0572100	LOC_Os01g39100.1				GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0009611 - response to wounding	TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
8634	C3H8	OsC3H8	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8	Zinc finger CCCH domain-containing protein 8	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8		1	Os01g0616400. Q5ZDJ6.	 Other	Os01g0616400	LOC_Os01g42970.1, LOC_Os01g42970.2				GO:0008270 - zinc ion binding, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0003677 - DNA binding		
8635	C3H9	OsC3H9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 9	Zinc finger CCCH domain-containing protein 9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 9		1	Os01g0645000. A2ZVY5.	 Other	Os01g0645000	LOC_Os01g45730.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
8638	S30 	S30(t)	HYBRID SPIKELET STERILITY 30			S30-i, S30-j, S30-n, S30(t)-i, S30(t)-j, S30(t)-n	7	Data on F1 fertility, segregation distortion in BC1F1 derived from IR36/Ludao//IR36 and linkage analysis are reported.  Semi-sterility expressed as an allelic interaction such as S30-i / S30-j. Segregation distortion in BC1F1 due to the abortion of female gametes having S30-j . O. sativa cv. IR36(S30-i), Ludao(S30-j) and N22(S30-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000436 - spikelet sterility, TO:0000358 - female sterility, TO:0000416 - embryosac abortion, TO:0000042 - f1-hybrid incompatibility	
8639	S31	S31-gi, S31-un, S31-n, S31(t)	HYBRID SPIKELET STERILITY 31				5	Data on F1 fertility, segregation distortion in BC1F1 derived from USSR5/Guangjie9//USSR5 and linkage analysis are reported.Semi-sterility expressed as an allelic interaction such as S31-un / S31-gi. Segregation distortion in BC1F1 due to the abortion of female gametes having S31-un .O. sativa cv. Guangjie 9 (S31-gi), USSR5 (S31-un) and Dular(S31-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
8640	S32	S32-kn, S32-ti, S32-n, S32(t)(=qSS2)	HYBRID SPIKELET STERILITY 32	hybrid sterility			2	Data on F1 fertility, segregation distortion in BC1F1 derived from Tuanguzao/ Ketan Nangka //Ketan Nangka and linkage analysis are reported. Semi-sterility expressed as an allelic interaction such as S32-kn / S32-ti . Segregation distortion in BC1F1 due to the abortion of female gametes having S32-n  O. sativa cv. Ketan Nangka(S32-kn), Tuanguzao(S32-ti) and Dular(S32-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development		
8641	S33		HYBRID SPIKELET STERILITY 33			S33-id, S33-j., S33-n	3	Data on F1 fertility, segregation distortion in BC1F1 derived from Akihikari//Ludao/Akihikari and linkage analysis are reported. Pollen semi-sterility expressed as an allelic interaction such as S33-id / S33-j. Segregation distortion in BC1F1 due to the abortion of male gametes having S33-id .O. sativa weedy strain Ludao (S33-id), cv. Akihikari (S33-j) and 02428 (S33-n) 	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion						GO:0007275 - multicellular organismal development	TO:0000436 - spikelet sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	
8642	S34	S34(t)	HYBRID SPIKELET STERILITY 34			S34-id, S34-j, S34-n	11	Data on F1 fertility, segregation distortion in BC1F1 derived from Akihikari//Ludao/Akihikari and linkage analysis are reported. Pollen semi-sterility expressed as an allelic interaction such as S34-id / S34-j. Segregationdistortion in BC1F1 due to the abortion of male gametes having S34-id O. sativa weedy strain Ludao (S34-id), cv. Akihikari (S34-j) and 02428 (S34-n). pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000218 - pollen abortion type, TO:0000436 - spikelet sterility, TO:0000036 - hybrid incompatibility	
8643	PSS1	pss1, OsPSS1	POLLEN SEMI-STERILITY 1 	pollen semi-sterility 1, pollen semi-sterile 1, Pollen semi-sterility1, Pollen semisterility1, Pollen semisterility 1		pss1	8	Data on genetic analysis and fine mapping of pss1 are reported.The female gamete of mutant W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence. O. sativa cv. Nipponbare. AP004562. PSS1 encodes a kinesin-1-like protein. BK007977. F9W301.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os08g0117000	LOC_Os08g02380.1, LOC_Os08g02380.2	GR:0101187			GO:0005871 - kinesin complex, GO:0009901 - anther dehiscence, GO:0005737 - cytoplasm, GO:0003777 - microtubule motor activity, GO:0005874 - microtubule, GO:0007126 - meiosis, GO:0007018 - microtubule-based movement, GO:0005524 - ATP binding	TO:0000053 - pollen sterility	
8644	LGC2		LOW GLUTELIN CONTENT 2				2	Data on genetic analysis, linkage analysis and the marker-assisted selection accuracy are reported. With a low glutelin content and a high prolamine content in rice seeds.O. sativa cv. W3660 	 Seed - Physiological traits - Storage substances						GO:0045735 - nutrient reservoir activity		
8645	ZFP245	OsZFP245, DLN192, OsDLN192, ZOS7-08, OsZOS7-08	ZINC FINGER PROTEIN 245	zinc finger protein ZFP245, DLN repressor 192, DLN motif protein 192, zinc-finger protein TFIIIA class of Oryza sativa 7-08, ZPT of Oryza sativa 7-08	ZINC FINGER PROTEIN 245		7	AY395294.	 Other,  Tolerance and resistance - Stress tolerance	Os07g0588700	LOC_Os07g39970.1		0		GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0009409 - response to cold, GO:0009738 - abscisic acid mediated signaling, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress	
8646	ZFP252	RZF71, DLN263, OsDLN263	ZINC FINGER PROTEIN 252	DLN repressor 263, DLN motif protein 263	ZINC FINGER PROTEIN 252		12	AY219847	 Other,  Tolerance and resistance - Stress tolerance	Os12g0583700	LOC_Os12g39400.1		0		GO:0008270 - zinc ion binding, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
8647	ONG1	ong1-3, ong1-4, OsGH, GH	ALPHA-GLUCOSIDASE 1	Alpha-D-glucoside glucohydrolase 1, glycosyl hydrolase	ALPHA-GLUCOSIDASE 1		6	AP004989, AP003728.	 Biochemical character	Os06g0676700	LOC_Os06g46340.1		0		GO:0004558 - alpha-glucosidase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0030246 - carbohydrate binding, GO:0005975 - carbohydrate metabolic process		
8648	ONG2	ONG3, ONG2-I, ONG2-II	ALPHA-GLUCOSIDASE 2	Alpha-D-glucoside glucohydrolase 2, Alpha-D-glucoside glucohydrolase 3	ALPHA-GLUCOSIDASE 2		6	Q653V7. AP003728, Two isoforms (ONG2-I and ONG2-II) are produced by post-translational proteolysis. The transcripts encoding ONG2 and ONG3 were generated by alternative splicing. ONG2: Os06g0675700-01, ONG3: Os06g0675700-02.	 Biochemical character	Os06g0675700	LOC_Os06g46284.2, LOC_Os06g46284.1		0		GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0032450 - maltase activity, GO:0030246 - carbohydrate binding, GO:0004558 - alpha-glucosidase activity		PO:0009010 - seed 
8649	ONG4		ALPHA-GLUCOSIDASE 4	Alpha-D-glucoside glucohydrolase 4	ALPHA-GLUCOSIDASE 4		1	AP002526.	 Biochemical character	Os01g0130400	LOC_Os01g03950.1		0		GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0004558 - alpha-glucosidase activity, GO:0044275 - cellular carbohydrate catabolic process, GO:0030246 - carbohydrate binding		
8651	ERF3	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2, DLN23, OsDLN23	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3	Apetela2 transcription factor 37, ethylene response factor 3, Ethylene responsive factor 3, ethylene response factor 75, APETALA2/ethylene-responsive element binding protein 4, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 2, benzothiadiazole-induced ethylene responsive transcriptional factor 2, BTH-induced ethylene responsive transcriptional factor 2, ethylene-responsive element binding factor 3, APETALA37, DLN repressor 23, DLN motif protein 23	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3		1	AB036883. AAV98701. AY831393 (indica).	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Yield and productivity	Os01g0797600	LOC_Os01g58420.1		0		GO:0003677 - DNA binding, GO:0048364 - root development, GO:0009736 - cytokinin mediated signaling, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0009873 - ethylene mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000164 - stress trait, TO:0000371 - yield trait, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity	PO:0000043 - crown root , PO:0007518 - crown root emergence stage 
8652	ERF91	OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3	ETHYLENE RESPONSE FACTOR 91	Apetela2 transcription factor 59, ethylene response factor 91, ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 91, APETALA2/ethylene-responsive element binding protein 147, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 3, benzothiadiazole-induced ethylene responsive transcriptional factor 3, BTH-induced ethylene responsive transcriptional factor 3, BTH-induced ERF transcriptional factor 3	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 91	ETHYLENE RESPONSE FACTOR 91	2	CAC39058. AY831394. GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium. GO:0071555: cell wall organization.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os02g0654700	LOC_Os02g43790.1		0		GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0009753 - response to jasmonic acid stimulus, GO:0009609 - response to symbiotic bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009620 - response to fungus, GO:0042546 - cell wall biogenesis	TO:0000173 - ethylene sensitivity, TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0006002 - proline content, TO:0000175 - bacterial blight disease resistance, TO:0000148 - viral disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000164 - stress trait	
8653	SNK1	SK1, OsSK1, OsSNK1, SK1C9285	SNORKEL 1	SNORKEL1	ETHYLENE RESPONSE FACTOR		12	Major QTL regulates deepwater response. AB510478 (O. sativa Indica, C9285), AB510480 (O. sativa Indica, Bhadua), AB510482 (O. rufipogon, W0120), AB510484 (O. nivara, W0106). SK1C9285 (deepwater rice [O. sativa admixture C9285 (Dowai38/9)] SK1). absent in normal cultivars [O. sativa ssp. japonica Taichung 65 (T65) and Nipponbare (O. sativa ssp. japonica)]. SNORKEL1 was present in both Ob and Og (Shang et al. 2022). a group VII ethylene response factor (ERFVII).	 Vegetative organ - Culm,  Character as QTL,  Tolerance and resistance - Stress tolerance				0		GO:0080006 - internode patterning, GO:0009413 - response to flooding, GO:0003677 - DNA binding, GO:0001666 - response to hypoxia, GO:0006351 - transcription, DNA-dependent, GO:0030912 - response to deep water, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000145 - internode length, TO:0000103 - deepwater stress, TO:0000524 - submergence tolerance	
8654	SNK2	SK2, OsSK2, OsSNK2	SNORKEL 2	SNORKEL2	ETHYLENE RESPONSE FACTOR		12	Major QTL regulates deepwater response. AB510479 (O. sativa Indica, C9285), AB510481 (O. sativa Indica, Bhadua), AB510483 (O. rufipogon, W0120), AB510485 (O. nivara, W0106), AB510486 ( O. glumipatula, IRGC105668), AB510487 (O. glumipatula, IRGC105668). absent in normal cultivars [O. sativa ssp. japonica Taichung 65 (T65) and Nipponbare (O. sativa ssp. japonica)]. SNORKEL2 was present in both Ob and Og (Shang et al. 2022). a group VII ethylene response factor (ERFVII).	 Vegetative organ - Culm,  Character as QTL,  Tolerance and resistance - Stress tolerance				0		GO:0003700 - transcription factor activity, GO:0030912 - response to deep water, GO:0080006 - internode patterning, GO:0009413 - response to flooding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0001666 - response to hypoxia	TO:0000524 - submergence tolerance, TO:0000145 - internode length, TO:0000103 - deepwater stress	
8655	LCS	OsHAK1, HAK1	LOW CS ACCUMULATION	High-affinity Potassium(K+) Transporter 1, Potassium transporter 1, low Cs accumulation	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 1 	lcs, lcs-1, lcs-2, lcs-3	4	AJ427970, AY324878. KT-HAK-KUP family of transporters. Q6VVA6.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os04g0401700	LOC_Os04g32920.1, LOC_Os04g32920.2, LOC_Os04g32920.3, LOC_Os04g32920.4, LOC_Os04g32920.5				GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0009651 - response to salt stress, GO:0030955 - potassium ion binding, GO:0055075 - potassium ion homeostasis, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0051365 - cellular response to potassium ion starvation, GO:0051607 - defense response to virus, GO:0009674 - potassium:sodium symporter activity	TO:0000207 - plant height, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0006001 - salt tolerance	
8656	HAK2	OsHAK2	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 2	High-affinity Potassium(K+) Transporter 2, Probable potassium transporter 2	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 2		1	AK070575, AK071411. KT-HAK-KUP family of transporters. Q942X8.	 Biochemical character	Os01g0935500	LOC_Os01g70940.1, LOC_Os01g70940.2, LOC_Os01g70940.3				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport		
8657	HAK3	OsHAK3	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3	High-affinity Potassium(K+) Transporter 3, Probable potassium transporter 3	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3		1	AJ427974. KT-HAK-KUP family of transporters. Q5ZC87.	 Biochemical character	Os01g0369300	LOC_Os01g27170.1				GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport		
8658	HAK4	OsHAK4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 4	High-affinity Potassium(K+) Transporter 4, Probable potassium transporter 4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 4		8	AK071698, AF129485. KT-HAK-KUP family of transporters. Q6YSA9.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0466200	LOC_Os08g36340.1				GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0051607 - defense response to virus, GO:0055075 - potassium ion homeostasis, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane	TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
8659	HAK5	OsHAK5, FCO13, OsFCO13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 5	High-affinity Potassium(K+) Transporter 5, Potassium transporter 5, high affinity K transporter 5, Functioning in Cesium Over-transport 13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 5	oshak5	1	AK241580. KT-HAK-KUP family of transporters. Q5JK32. The O. glaberrima ortholog of OsHAK5 is significantly upregulated under salt stress. (Meyer et al. 2016) GO:0071588: hydrogen peroxide mediated signaling pathway.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0930400	LOC_Os01g70490.1				GO:0055075 - potassium ion homeostasis, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0051607 - defense response to virus, GO:0006813 - potassium ion transport, GO:0048364 - root development, GO:0030001 - metal ion transport, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0000605 - hydrogen peroxide content, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0006001 - salt tolerance, TO:0000656 - root development trait	PO:0025034 - leaf , PO:0007520 - root development stage , PO:0009005 - root 
8660	HAK6	OsHAK6, OsSTA42	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 6	High-affinity Potassium(K+) Transporter 6, Potassium transporter 6.	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 6		1	KT-HAK-KUP family of transporters. Q5JMH0. LOC_Os01g70660. a mature anther-preferentially expressed gene. The OsHAK6 ortholog in O. glaberrima did not show evidence of upregulation under salt stress. (Meyer et al. 2016)	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os01g0932500	LOC_Os01g70660.1				GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane		PO:0009066 - anther 
8661	HAK7	OsHAK7	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 7	High-affinity Potassium(K+) Transporter 7, Potassium transporter 7	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 7		7	AJ427971, AJ427976. KT-HAK-KUP family of transporters. Q8H3P9.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0669700	LOC_Os07g47350.1, LOC_Os07g47350.2				GO:0055075 - potassium ion homeostasis, GO:0051607 - defense response to virus, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0051365 - cellular response to potassium ion starvation	TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
8662	HAK8	OsHAK8	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 8	High-affinity Potassium(K+) Transporter 8, Putative potassium transporter 8	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 8		3	AJ427977. KT-HAK-KUP family of transporters. Q8VXB5.	 Biochemical character	Os03g0337500	LOC_Os03g21890.1				GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport		
8663	HAK9	OsHAK9	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 9	High-affinity Potassium(K+) Transporter 9, Probable potassium transporter 9	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 9		7	AK070738. KT-HAK-KUP family of transporters. Q7XIV8.	 Biochemical character	Os07g0679000	LOC_Os07g48130.1, LOC_Os07g48130.2, LOC_Os07g48130.3, LOC_Os07g48130.4				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity		
8664	HAK10	OsHAK10	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 10	High-affinity Potassium(K+) Transporter 10, Potassium transporter 10	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 10		6	AJ427972, AJ427979. KT-HAK-KUP family of transporters. Q67VS5.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0625900	LOC_Os06g42030.1				GO:0030955 - potassium ion binding, GO:0005773 - vacuole, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport		
8665	HAK11	OsHAK11	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 11	High-affinity Potassium(K+) Transporter 11, Probable potassium transporter 11	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 11		4	KT-HAK-KUP family of transporters. Q7XLC6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0613900	LOC_Os04g52390.1				GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0055085 - transmembrane transport, GO:0015079 - potassium ion transmembrane transporter activity	TO:0006001 - salt tolerance	
8666	HAK12	OsHAK12	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 12	High-affinity Potassium(K+) Transporter 12, Putative potassium transporter 12	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 12		8	AJ427981. KT-HAK-KUP family of transporters. Q8VXB1.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0206400	LOC_Os08g10550.1				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0051365 - cellular response to potassium ion starvation, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity		
8667	HAK13	OsHAK13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 13	High-affinity Potassium(K+) Transporter 13, Probable potassium transporter 13	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 13		6	AJ427982. KT-HAK-KUP family of transporters. Q652J4.	 Biochemical character	Os06g0671000	LOC_Os06g45940.1, LOC_Os06g45940.2				GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport		
8668	HAK14	OsHAK14	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 14	High-affinity Potassium(K+) Transporter 14, Probable potassium transporter 14	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 14		7	AJ427983. KT-HAK-KUP family of transporters. Q69RI8.	 Biochemical character	Os07g0509200	LOC_Os07g32530.1				GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding		
8669	HAK15	OsHAK15	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 15	High-affinity Potassium(K+) Transporter 15, Probable potassium transporter 15	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 15		4	AJ427984. KT-HAK-KUP family of transporters. Q7XPL3. 	 Biochemical character	Os04g0610700	LOC_Os04g52120.1				GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding		
8670	HAK16	OsHAK16	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 16	High-affinity Potassium(K+) Transporter 16, Probable potassium transporter 16	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 16		3	AJ427973. KT-HAK-KUP family of transporters. Q84MS3. GO:0071705: nitrogen compound transport. GO:1990573: potassium ion import across plasma membrane.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0575200	LOC_Os03g37840.1				GO:0051365 - cellular response to potassium ion starvation, GO:0016021 - integral to membrane, GO:0009620 - response to fungus, GO:0042594 - response to starvation, GO:0055078 - sodium ion homeostasis, GO:0005886 - plasma membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0055075 - potassium ion homeostasis, GO:0030955 - potassium ion binding, GO:0009651 - response to salt stress, GO:0006813 - potassium ion transport	TO:0000609 - potassium content, TO:0006001 - salt tolerance, TO:0000514 - potassium uptake, TO:0000008 - potassium sensitivity	PO:0004006 - mesophyll cell , PO:0005020 - vascular bundle , PO:0009047 - stem , PO:0025034 - leaf 
8671	HAK17	OsHAK17, FCO3, FCO4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 17	High-affinity Potassium(K+) Transporter 17, Probable potassium transporter 17, Functioning in Cesium Over-transport 3, Functioning in Cesium Over-transport 4	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 17		9	KT-HAK-KUP family of transporters. Q67UC7.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0448200	LOC_Os09g27580.1, LOC_Os09g27580.2, LOC_Os09g27580.3				GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0030955 - potassium ion binding, GO:0055075 - potassium ion homeostasis, GO:0006813 - potassium ion transport, GO:0051607 - defense response to virus, GO:0015079 - potassium ion transmembrane transporter activity	TO:0000213 - rice grassy stunt 1 and 2 virus resistance	PO:0025034 - leaf 
8672	HAK18	OsHAK18	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18	High-affinity Potassium(K+) Transporter 18, Potassium transporter 18	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18		9	AK065464. KT-HAK-KUP family of transporters. Q653B6.	 Biochemical character	Os09g0563200	LOC_Os09g38960.2, LOC_Os09g38960.3, LOC_Os09g38960.4				GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane, GO:0030955 - potassium ion binding		
8673	HAK19	OsHAK19	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 19	High-affinity Potassium(K+) Transporter 19, Potassium transporter 19	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 19		2	AK106353. KT-HAK-KUP family of transporters. Q6H4M2.	 Biochemical character	Os02g0518600	LOC_Os02g31910.1, LOC_Os02g31910.2				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity		
8674	HAK20	OsHAK20	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 20	High-affinity Potassium(K+) Transporter 20, Potassium transporter 20	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 20		2	AK119325. KT-HAK-KUP family of transporters. Q6H4L9.	 Biochemical character	Os02g0519100	LOC_Os02g31940.1				GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity		
8675	HAK21	OsHAK21	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 21	High-affinity Potassium(K+) Transporter 21, Potassium transporter 21	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 21	oshak21	3	KT-HAK-KUP family of transporters. Q75G84.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0576200	LOC_Os03g37930.1				GO:0030007 - cellular potassium ion homeostasis, GO:0009753 - response to jasmonic acid stimulus, GO:0030955 - potassium ion binding, GO:0042542 - response to hydrogen peroxide, GO:0006813 - potassium ion transport, GO:0005886 - plasma membrane, GO:0006883 - cellular sodium ion homeostasis, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0010107 - potassium ion import, GO:0015079 - potassium ion transmembrane transporter activity	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000514 - potassium uptake, TO:0000609 - potassium content, TO:0000525 - sodium to potassium content ratio	PO:0005352 - xylem , PO:0005421 - parenchyma 
8676	HAK22	OsHAK22	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 22	High-affinity Potassium(K+) Transporter 22, Potassium transporter 22	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 22		7	AK099800. KT-HAK-KUP family of transporters. Q69L87.	 Biochemical character	Os07g0102100	LOC_Os07g01214.1				GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane		
8677	HAK23	OsHAK23	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 23	High-affinity Potassium(K+) Transporter 23, Potassium transporter 23	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 23		9	AK070831. KT-HAK-KUP family of transporters. Q6H4R6.	 Biochemical character	Os09g0376900	LOC_Os09g21000.1				GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0030955 - potassium ion binding		
8678	HAK24	OsHAK24	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 24	High-affinity Potassium(K+) Transporter 24, Potassium transporter 24	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 24		6	KT-HAK-KUP family of transporters. Q5Z6K9.	 Biochemical character	Os06g0270200	LOC_Os06g15910.1				GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity		
8679	HAK25	OsHAK25	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 25	High-affinity Potassium(K+) Transporter 25, Potassium transporter 25	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 25		2	KT-HAK-KUP family of transporters. Q6YWQ4. Potassium transporter (KT) in Hu et al. 2015. LOC_Os02g49760.	 Biochemical character	Os02g0730300	LOC_Os02g49760.1, LOC_Os02g49760.2, LOC_Os02g49760.3, LOC_Os02g49760.4				GO:0030955 - potassium ion binding, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport		
8680	HAK26	OsHAK26	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 26	High-affinity Potassium(K+) Transporter 26, Potassium transporter 26	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 26		8	AK072472. KT-HAK-KUP family of transporters. Q84YJ9.	 Biochemical character	Os08g0510300	LOC_Os08g39950.1				GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport		
8681	HAK27	OsHAK27	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 27	High-affinity Potassium(K+) Transporter 27, Potassium transporter 27	HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 27		3	AK068853. KT-HAK-KUP family of transporters. Q84MS4.	 Biochemical character	Os03g0574900	LOC_Os03g37830.1				GO:0009753 - response to jasmonic acid stimulus, GO:0006813 - potassium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030955 - potassium ion binding, GO:0016021 - integral to membrane	TO:0000172 - jasmonic acid sensitivity	
8682	NYC3	nyc3, OsNYC3, PPH	NON-YELLOW COLORING 3	pheophytinase	PLASTID-LOCALIZING ALPHA/BETA HYDROLASE-FOLD FAMILY PROTEIN	nyc3-1, nyc3-2, nyc3-3	6	AB476298. stay green. 	 Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Biochemical character,  Character as QTL - Yield and productivity	Os06g0354700	LOC_Os06g24730.3, LOC_Os06g24730.2, LOC_Os06g24730.1		0		GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus, GO:0009536 - plastid, GO:0009645 - response to low light intensity stimulus, GO:0016787 - hydrolase activity, GO:0080124 - pheophytinase activity, GO:0010941 - regulation of cell death, GO:0015996 - chlorophyll catabolic process	TO:0000340 - total soluble sugar content, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000590 - grain weight, TO:0000249 - leaf senescence, TO:0000255 - sheath blight disease resistance, TO:0000396 - grain yield, TO:0000460 - light intensity sensitivity, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000291 - carbohydrate content, TO:0000696 - starch content, TO:0000605 - hydrogen peroxide content, TO:0000382 - 1000-seed weight, TO:0000333 - sugar content, TO:0000447 - filled grain number	PO:0001054 - 4 leaf senescence stage 
8683	NOL	nol, NOL1, OsNOL, OsNOL1	NYC1-LIKE	"Non-Yellow Coloring 1 like, NYC1-like, \"Chlorophyll(ide) b reductase NOL, chloroplastic\", Protein NON-YELLOW COLORING 1-LIKE, Protein NYC1-LIKE, Short-chain dehydrogenase/reductase NOL"	NYC1-LIKE, NOL-1, NOL-2, NOL-3, NOL-4, NOL-5, NOL-6		3	chlorophyll b reductase, Chl b reductase, chlorophyll(ide) b reductase. Q84ST4. AB255026. EC=1.1.1.294	 Vegetative organ - Leaf,  Biochemical character,  Coloration - Chlorophyll	Os03g0654600	LOC_Os03g45194.1	GR:0101293	0		GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0055114 - oxidation reduction, GO:0034256 - chlorophyll(ide) b reductase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0015996 - chlorophyll catabolic process, GO:0005488 - binding, GO:0016491 - oxidoreductase activity, GO:0008152 - metabolic process, GO:0009536 - plastid	TO:0000326 - leaf color, TO:0000495 - chlorophyll content	
8684	NHL1		NYC3-LIKE 1		NYC3-LIKE 1		2	Os02g0705100	 Biochemical character	Os02g0705100	LOC_Os02g47620.1, LOC_Os02g47620.2, LOC_Os02g47620.3		0		GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence, GO:0016787 - hydrolase activity		
8685	NHL2		NYC3-LIKE 2		NYC3-LIKE 2		7	Os07g38830	 Biochemical character	Os07g0575800	LOC_Os07g38830.1, LOC_Os07g38830.2		0		GO:0016787 - hydrolase activity, GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence		
8686	NHL3		NYC3-LIKE 3		NYC3-LIKE 3		5	Os05g0419000	 Biochemical character	Os05g0419000	LOC_Os05g34630.1		0		GO:0010150 - leaf senescence, GO:0015996 - chlorophyll catabolic process, GO:0016787 - hydrolase activity		
8688	PLDalpha2	OsPLDalpha2, OsC2DP43, C2DP43	PHOSPHOLIPASE D alpha 2	phospholipase Dalpha2, C2 Domain-Containing Protein 43	PHOSPHOLIPASE D alpha 2		5	PO:0030123: panicle inflorescence.	 Biochemical character	Os05g0171000	LOC_Os05g07880.1, LOC_Os05g07880.2		0		GO:0005509 - calcium ion binding, GO:0004630 - phospholipase D activity, GO:0016042 - lipid catabolic process, GO:0046470 - phosphatidylcholine metabolic process, GO:0016020 - membrane, GO:0070290 - NAPE-specific phospholipase D activity		PO:0009049 - inflorescence 
8692	PLDalpha6	OsPLDalpha6, OsPLDeta1, OsPLDmu, OsC2DP31, C2DP31	PHOSPHOLIPASE D alpha 6	phospholipase D mu, C2 Domain-Containing Protein 31	PHOSPHOLIPASE D alpha 6		3	OsPLDeta1 in Qi et al. 2011. AC099323. OsPLDmu in Elias et al. 2002.	 Biochemical character	Os03g0391400	LOC_Os03g27370.1		0		GO:0070290 - NAPE-specific phospholipase D activity, GO:0004630 - phospholipase D activity, GO:0009414 - response to water deprivation, GO:0046470 - phosphatidylcholine metabolic process, GO:0005509 - calcium ion binding, GO:0016020 - membrane, GO:0046466 - membrane lipid catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress		
8693	PLDalpha7	OsPLDalpha7, OsPLDtheta	PHOSPHOLIPASE D alpha 7	phospholipase D theta	PHOSPHOLIPASE D alpha 7		8	OsPLDtheta in Elias et al. 2002.	 Biochemical character	Os08g0401800	LOC_Os08g31060.1		0		GO:0004630 - phospholipase D activity		
8694	PLDalpha8	OsPLDalpha8, OsPLDlambda, OsC2DP74, C2DP74	PHOSPHOLIPASE D alpha 8	phospholipase D lambda, C2 Domain-Containing Protein 74	PHOSPHOLIPASE D alpha 8		9	AF411223. AU094063, C72750, C93652. OsPLDlambda in Elias et al. 2002. PO:0030123: panicle inflorescence.	 Biochemical character	Os09g0421300	LOC_Os09g25390.1		0		GO:0005509 - calcium ion binding, GO:0070290 - NAPE-specific phospholipase D activity, GO:0051365 - cellular response to potassium ion starvation, GO:0051301 - cell division, GO:0016049 - cell growth, GO:0009791 - post-embryonic development, GO:0045848 - positive regulation of nitrogen utilization, GO:0046470 - phosphatidylcholine metabolic process, GO:0048364 - root development, GO:0004630 - phospholipase D activity, GO:0009395 - phospholipid catabolic process, GO:0006995 - cellular response to nitrogen starvation, GO:0006970 - response to osmotic stress, GO:0005886 - plasma membrane, GO:0016036 - cellular response to phosphate starvation		PO:0009049 - inflorescence 
8695	PLDbeta1	OsPLDbeta1, OsC2DP79, C2DP79	PHOSPHOLIPASE D beta 1	phospholipase Dbeta1, C2 Domain-Containing Protein 79	PHOSPHOLIPASE D beta 1		10	AJ419630. AU091872, BE530951, C72286. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0524400	LOC_Os10g38060.1, LOC_Os10g38060.2		0		GO:0046686 - response to cadmium ion, GO:0003824 - catalytic activity, GO:0009416 - response to light stimulus, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0004630 - phospholipase D activity, GO:0050832 - defense response to fungus, GO:0007623 - circadian rhythm, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000075 - light sensitivity, TO:0000074 - blast disease	
8696	PLDbeta2	OsPLDbeta2, OsSTA86, OsC2DP27, C2DP27	PHOSPHOLIPASE D beta 2	C2 Domain-Containing Protein 27	PHOSPHOLIPASE D beta 2		3	AF411221. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0119100	LOC_Os03g02740.1		0		GO:0016020 - membrane, GO:0004630 - phospholipase D activity, GO:0005509 - calcium ion binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0070290 - NAPE-specific phospholipase D activity, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0016042 - lipid catabolic process, GO:0046470 - phosphatidylcholine metabolic process, GO:0046686 - response to cadmium ion		PO:0009066 - anther 
8697	PLDdelta1	OsPLDdelta1, OsPLDdelta, OsSTA233, OsC2DP77, C2DP77	PHOSPHOLIPASE D delta 1	phospholipase D delta, C2 Domain-Containing Protein 77	PHOSPHOLIPASE D delta 1		9	AU058024, BE040461. GO:0090333: regulation of stomatal closure. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0543100	LOC_Os09g37100.1		0		GO:0009409 - response to cold, GO:0009506 - plasmodesma, GO:0016042 - lipid catabolic process, GO:0012501 - programmed cell death, GO:0046470 - phosphatidylcholine metabolic process, GO:0046473 - phosphatidic acid metabolic process, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0005509 - calcium ion binding, GO:0070290 - NAPE-specific phospholipase D activity, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0004630 - phospholipase D activity		PO:0009066 - anther 
8699	PLDdelta3	OsPLDdelta3, OsPLDnu2, OsC2DP61, C2DP61	PHOSPHOLIPASE D delta 3	phospholipase D nu 2, C2 Domain-Containing Protein 61	PHOSPHOLIPASE D delta 3		7	AF414565, AF414566. OsPLDnu2 in Elias et al. 2002.	 Biochemical character	Os07g0260400	LOC_Os07g15680.1		0		GO:0016020 - membrane, GO:0004630 - phospholipase D activity, GO:0003824 - catalytic activity, GO:0070290 - NAPE-specific phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process, GO:0016042 - lipid catabolic process, GO:0005509 - calcium ion binding		
8700	PLDkappa	OsPLDkappa, OsC2DP12, C2DP12	PHOSPHOLIPASE D kappa	C2 Domain-Containing Protein 12	PHOSPHOLIPASE D kappa		2		 Biochemical character	Os02g0120200	LOC_Os02g02790.1		0		GO:0009395 - phospholipid catabolic process, GO:0004630 - phospholipase D activity, GO:0005886 - plasma membrane		
8701	PLDzeta1	OsPLDzeta1, OsPLDrho1	PHOSPHOLIPASE D zeta 1	phospholipase D rho 1	PHOSPHOLIPASE D zeta 1		5	BF430634. OsPLDrho1 in Elias et al. 2002, Jeong et al. 2016. LOC_Os05g29050.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0358700	LOC_Os05g29050.1, LOC_Os05g29050.2		0		GO:0004630 - phospholipase D activity, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
8702	PLDzeta2	OsPLDzeta2, OsPLDrho2	PHOSPHOLIPASE D zeta 2	phospholipase D rho 2	PHOSPHOLIPASE D zeta 2		1	C19214, AU091665, AU173474, AU173473. OsPLDrho2 in Elias et al. 2002. LOC_Os01g20860.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0310100	LOC_Os01g20860.1		0		GO:0005543 - phospholipid binding, GO:0016036 - cellular response to phosphate starvation, GO:0004630 - phospholipase D activity	TO:0002661 - seed maturation, TO:0000102 - phosphorus sensitivity	
8703	PLDvarphi	OsPLDvarphi, spPLD, OsspPLD	PHOSPHOLIPASE D varphi		PHOSPHOLIPASE D varphi		6	a secretory PLD. GO:2000028: regulation of photoperiodism, flowering. PO:0030123: panicle inflorescence.	 Reproductive organ - Heading date,  Biochemical character	Os06g0649900	LOC_Os06g44060.1, LOC_Os06g44060.2		0		GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048573 - photoperiodism, flowering, GO:0005615 - extracellular space, GO:0034638 - phosphatidylcholine catabolic process, GO:0004630 - phospholipase D activity	TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0009005 - root , PO:0009049 - inflorescence 
8704	HD16	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1	HEADING DATE 16	EARLY FLOWERING 1, Early flowering1, Casein Kinase I	CASEIN KINASE I		3	Under long day (14.5hr) treatment, this QTL introduced from Koshihikari to Nipponbare decreased the days to heading. Hd16 is involved in the photoperiodic flowering pathway by means of its phosphorylaion of Ghd7. The genome sequence of Hd16 in Nipponbare is the same as that of the wild-type allele of EL1. EL1 encodes the casein kinase I that phosphorylates SLR1. The genome sequence of Hd16 in Nipponbare is the same as that of the wild-type allele of EL1. LOC_Os03g57940.	 Biochemical character,  Reproductive organ - Heading date	Os03g0793500	LOC_Os03g57940.1, LOC_Os03g57940.2, LOC_Os03g57940.3, LOC_Os03g57940.4		0		GO:0009648 - photoperiodism, GO:2000028 - regulation of photoperiodism, flowering, GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time, TO:0000137 - days to heading	
8705	HD3B	Hd17, EF7, Ef7, OsELF3-1, ELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1, OsELF3a, ELF3a	HEADING DATE 3B	HEADING DATE 17, EARLINESS 7, EARLY FLOWERING 3-1, EARLY FLOWERING3.1, EARLY FLOWERING 3.1, ELF3 homolog 1, Heading date from Qingluzhan 11, EARLY FLOWERING3		oself3, Ef7-1, Hd-q, oself3.1, OsELF3(L), OsELF3(S), elf3-1	6	KC204687. Under long day (14.5hr) treatment, this QTL introduced from Koshihikari to Nipponbare increased the days to heading. AB683966(Nipponbare), AB683967(Koshihikari), AB683968(Kasalath). This gene encodes a homolog of Arabidopsis EARLY FLOWERING 3 (ELF3). AB686539(Gimbozu), AB686540(HS276), EF7 encodes an ELF3-like protein. EF7 functions as a floral promoter by repressing Ghd7 expression under both SD and LD conditions. an Ortholog of Arabidopsis EARLY FLOWERING 3. a rice ortholog of Arabidopsis gene for circadian clock component. GO:1900057: positive regulation of leaf senescence.	 Vegetative organ - Leaf,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os06g0142600	LOC_Os06g05060.1		0		GO:0048573 - photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0009648 - photoperiodism	TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000229 - photoperiod sensitivity, TO:0000249 - leaf senescence, TO:0000396 - grain yield, TO:0000137 - days to heading, TO:0000590 - grain weight	PO:0001054 - 4 leaf senescence stage 
8706	HOS58		HOMEOBOX ORYZA SATIVA 58	Homeobox protein knotted-1-like 2, Homeobox protein HOS58	HOMEOBOX PROTEIN HOS58		2	Q0E3C3.	 Other	Os02g0182800	LOC_Os02g08544.1, LOC_Os02g08544.2, LOC_Os02g08544.3		0		GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
8707	HOS59		HOMEOBOX ORYZA SATIVA59	Homeobox protein knotted-1-like 11, Homeobox protein HOS59	HOMEOBOX PROTEIN HOS59		6	Q94LW4. Knox homeodomain protein.	 Other	Os06g0646600	LOC_Os06g43860.1, LOC_Os06g43860.2, LOC_Os06g43860.4		0		GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
8708	KNAT7	HOS66, HB365, OsKNAT7	KNOTTED ARABIDOPSIS THALIANA 7	HOMEOBOX ORYZA SATIVA 66, Homeobox protein knotted-1-like 3, Homeobox protein HOS66, KNOTTED ARABIDOPSIS THALIANA7, KNOX ARABIDOPSIS THALIANA7	HOMEOBOX PROTEIN HOS66	knat7, Osknat7	3	AF003602. Q94LW3. a rice homolog of Arabidopsis KNAT7. GO:1901141: regulation of lignin biosynthetic process. GO:1901347: negative regulation of secondary cell wall biogenesis.	 Other,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Reproductive organ - Inflorescence,  Vegetative organ - Culm	Os03g0123500	LOC_Os03g03164.3, LOC_Os03g03164.2, LOC_Os03g03164.1		0		GO:0009809 - lignin biosynthetic process, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009664 - plant-type cell wall organization, GO:0001558 - regulation of cell growth, GO:0009834 - secondary cell wall biogenesis, GO:0080006 - internode patterning, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000051 - stem strength, TO:0000397 - grain size, TO:0000731 - lignin content, TO:0000068 - lodging incidence, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
8709	OSH45	OSH42, OSH44, H45	HOMEOBOX45	Oryza sativa homeobox45, Homeobox protein knotted-1-like 13, Homeobox protein OSH45	HOMEODOMAIN CONTAINING PROTEIN 45		8	Q0J6N4. D49704. OSH42 and OSH44 are alternative spliced products.	 Other	Os08g0292900	LOC_Os08g19650.1, LOC_Os08g19650.2		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription		
8710	GAMYBL1	OsGAMYBL1, OsMYB80, MYB80, Os2R_MYB66, 2R_MYB66	GAMYB-LIKE 1	GAMYB-like1, MYB transcription factor 80, R2R3-MYB Transcription Factor 66	GAMYB-LIKE 1	gamybl-1, gamybl-2	6	AB212075.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os06g0605600	LOC_Os06g40330.1		0		GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0010476 - gibberellin-mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0001666 - response to hypoxia, GO:0009908 - flower development	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance	PO:0009072 - plant ovary , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009030 - carpel , PO:0009066 - anther 
8711	GAMYBL2	OsGAMYBL2, Os2R_MYB40, 2R_MYB40	GAMYB-LIKE 2	R2R3-MYB Transcription Factor 40	GAMYB-LIKE 2		3	AC147962, AAT76349. the direct target of miR159 ( Zhao et al. 2023). GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:1900367: positive regulation of defense response to insect.	 Character as QTL - Plant growth activity,  Seed - Morphological traits - Grain shape,  Other,  Tolerance and resistance - Insect resistance,  Character as QTL - Yield and productivity	Os03g0578900	LOC_Os03g38210.1		0		GO:0010476 - gibberellin-mediated signaling, GO:0009742 - brassinosteroid mediated signaling, GO:0002213 - defense response to insect, GO:0009908 - flower development	TO:0000424 - brown planthopper resistance, TO:0000357 - growth and development trait, TO:0000397 - grain size	
8712	BT1-1	OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2	BRITTLE 1-1	Brittle-1-1, endosperm-specific gene 29, BRITTLE1, shrunken3	BRITTLE 1-1 PROTEIN	shr3, osbt1	2	plastidic translocator, putative ADP-glucose translocator, Brittle-1 protein, BT1.  a target of miR5493. OsBT1 in Cakir et al. 2016 and Li et al. 2017. ADP-glucose transporter. OsBT1-2 in Yamaguchi 2007, Zhao et al. 2019. GO:2000033: regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm	Os02g0202400	LOC_Os02g10800.1, LOC_Os02g10800.3, LOC_Os02g10800.2		0		GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0010162 - seed dormancy, GO:0010431 - seed maturation, GO:0003735 - structural constituent of ribosome, GO:0005975 - carbohydrate metabolic process, GO:0019252 - starch biosynthetic process, GO:0010021 - amylopectin biosynthetic process, GO:0033097 - amyloplast membrane, GO:0009660 - amyloplast organization, GO:0055085 - transmembrane transport, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0005982 - starch metabolic process, GO:0010581 - regulation of starch biosynthetic process, GO:0006412 - translation, GO:0015711 - organic anion transport	TO:0000100 - shrunken endosperm, TO:0000696 - starch content, TO:0000259 - heat tolerance, TO:0002661 - seed maturation, TO:0000253 - seed dormancy, TO:0000487 - endosperm color, TO:0000382 - 1000-seed weight, TO:0002658 - starch grain synthesis, TO:0000196 - amylose content	PO:0007632 - seed maturation stage , PO:0009089 - endosperm 
8713	BT1-2	OsBT1-2	BRITTLE 1-2	Brittle-1-2	BRITTLE 1-2 PROTEIN		5	Os05g0171300. plastidic translocator, putative ADP-glucose translocator, Brittle-1 protein, BT1.	 Biochemical character	Os05g0171300	LOC_Os05g07900.1, LOC_Os05g07900.2		0		GO:0005982 - starch metabolic process, GO:0022891 - substrate-specific transmembrane transporter activity		
8714	BT1-3	OsBT1-3, SLA	BRITTLE 1-3	Brittle-1-3, seedling leaf albino	BRITTLE 1-3 PROTEIN	sla	6	LOC_Os06g40050. plastidic translocator, putative ADP-glucose translocator, Brittle-1 protein, BT1.	 Vegetative organ - Leaf,  Biochemical character,  Coloration - Chlorophyll	Os06g0602700	LOC_Os06g40050.1, LOC_Os06g40050.2		0		GO:0006839 - mitochondrial transport, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0015853 - adenine transport, GO:0015292 - uniporter activity, GO:0009941 - chloroplast envelope, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0005743 - mitochondrial inner membrane, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0005982 - starch metabolic process	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	
8715	PPT1	OsPPT1	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 1				9	Os09g0297400	 Biochemical character	Os09g0297400	LOC_Os09g12600.1, LOC_Os09g12600.2		0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
8716	PPT2	OsPPT2	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2				8	LOC_Os08g25630 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character				0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
8717	PPT3	OsPPT3	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 3				1	Os01g0172100	 Biochemical character	Os01g0172100	LOC_Os01g07730.1		0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
8718	PPT4	OsPPT4	PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 4				5	LOC_Os05g07870	 Biochemical character	Os05g0170950	LOC_Os05g07870.1		0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
8719	TPT1	OsTPT1, TPT, tpt	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 1	triose phosphate/phosphate translocator, triose phosphate/phosphate translocator 1	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 1		1	AY028422. Q9FTT3.	 Biochemical character	Os01g0239200	LOC_Os01g13770.1, LOC_Os01g13770.2, LOC_Os01g13770.3		0		GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0008643 - carbohydrate transport, GO:0005215 - transporter activity		
8720	TPT2	OsTPT2	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 2	triose phosphate/phosphate translocator 2	TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 2		5	Os05g0241200	 Biochemical character	Os05g0241200	LOC_Os05g15160.1		0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane, GO:0006810 - transport		
8721	GPT1	OsGPT1, OsGPT2, GPT2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1	GLUCOSE-6-PHOSPHATE TRANSPORTER 2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1		8	GPT2 in Gong et al. 2018. GO:0071917: triose-phosphate transmembrane transporter activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0187800	LOC_Os08g08840.1, LOC_Os08g08840.2		0		GO:0005794 - Golgi apparatus, GO:0015120 - phosphoglycerate transmembrane transporter activity, GO:0008514 - organic anion transmembrane transporter activity, GO:0031969 - chloroplast membrane, GO:0009408 - response to heat, GO:0015718 - monocarboxylic acid transport, GO:0015297 - antiporter activity, GO:0016021 - integral to membrane, GO:0015605 - organophosphate ester transmembrane transporter activity	TO:0000259 - heat tolerance	PO:0007632 - seed maturation stage 
8722	GPT2-1	OsGPT2-1	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-1		GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-1		7	LOC_Os07g34010 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character				0		GO:0005215 - transporter activity		
8723	GPT2-2	OsGPT2-2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-2		GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-2		7	LOC_Os07g33960 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character				0		GO:0005215 - transporter activity		
8724	GPT2-3	OsGPT2-3	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-3		GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-3		7	LOC_Os07g33910	 Biochemical character	Os07g0523400	LOC_Os07g33910.2		0		GO:0016020 - membrane, GO:0005215 - transporter activity		
8725	NTT1	OsNTT1	PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 1		PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 1		1	Os01g0647100	 Biochemical character	Os01g0647100	LOC_Os01g45910.1		0		GO:0005471 - ATP:ADP antiporter activity		
8726	NTT2	OsNTT2	PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 2		PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 2		2	Os02g0208100	 Biochemical character	Os02g0208100	LOC_Os02g11740.1, LOC_Os02g11740.2		0		GO:0005471 - ATP:ADP antiporter activity		
8727	PGLCT	OsPGLCT, OspGlcT1, pGlcT1	PLASTIDIC GLUCOSE TRANSLOCATOR	PLASTIDIC GLUCOSE TRANSLOCATOR 1, pGlcT protein 1, monosaccharide transporter pGlcT1	PLASTIDIC GLUCOSE TRANSLOCATOR		1		 Biochemical character	Os01g0133400	LOC_Os01g04190.4, LOC_Os01g04190.3, LOC_Os01g04190.2, LOC_Os01g04190.1		0		GO:0016020 - membrane, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0015293 - symporter activity, GO:0005351 - sugar:hydrogen symporter activity, GO:0008643 - carbohydrate transport		
8728	MT	OsMT, OsMEX1, MEX1	MALTOSE TRANSLOCATOR	maltose excess1, maltose excess 1	MALTOSE TRANSLOCATOR		4	a plastidic maltose transporter. KC865045. BGIOSGA014411.	 Biochemical character	Os04g0602400	LOC_Os04g51330.1		0		GO:0009941 - chloroplast envelope, GO:0005363 - maltose transmembrane transporter activity		PO:0009029 - stamen , PO:0025281 - pollen 
8730	PROG1	OsPROG1, ZOS7-02, OsZOS7-02	PROSTRATE GROWTH 1	zinc-finger nuclear transcription factor PROG1, zinc-finger protein TFIIIA class of Oryza sativa 7-02, ZPT of Oryza sativa 7-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-02	prog1	7	EU554631(Oryza rufipogon), EU556720(Oryza rufipogon), EU556721(Oryza rufipogon), EU556722(Oryza nivara), EU556723(Oryza sativa), EU556719(Oryza rufipogon), EU556718(Oryza rufipogon), FJ155665(Oryza rufipogon). HM149562-HM237792 (O. sativa, O. rufipogon and O. nivara gene, promoter region). ZnF1 in O. rufipogon. MF503970, MF503971, MF503972 (O. rufipogon). ASR75314 (O. rufipogon). OsPROG1 and OgPROG7 are syntenic and orthologs (Shang et al. 2022).	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Other	Os07g0153600	LOC_Os07g05900.1	GR:0080061	0		GO:0048873 - homeostasis of number of cells within a tissue, GO:0009536 - plastid, GO:0005634 - nucleus, GO:0016563 - transcription activator activity	TO:0000449 - grain yield per plant, TO:0000207 - plant height, TO:0000567 - tiller angle, TO:0002759 - grain number, TO:0000547 - primary branch number, TO:0000440 - grain number per plant, TO:0000557 - secondary branch number, TO:0000152 - panicle number	PO:0009081 - inflorescence branch , PO:0008019 - leaf lamina base , PO:0005001 - basal axillary shoot system , PO:0008017 - leaf sheath pulvinus 
8731	FC1	OsCAD7, fc1, CAD7	FLEXIBLE CULM 1	flexible culm1, FLEXIBLE CULM1, Protein FLEXIBLE CULM 1, Cinnamyl alcohol dehydrogenase 7	CINNAMYL-ALCOHOL DEHYDROGENASE 7	fc	4	fc1 plants exhibited a reduction in mechanical strength and a slight delay in growth. Q0JA75. GO:0052747:sinapyl alcohol dehydrogenase activity. GO:1901698: response to nitrogen compound. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm	Os04g0612700	LOC_Os04g52280.1		0		GO:0009834 - secondary cell wall biogenesis, GO:0044036 - cell wall macromolecule metabolic process, GO:0009808 - lignin metabolic process, GO:0055114 - oxidation reduction, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0008270 - zinc ion binding, GO:0009809 - lignin biosynthetic process, GO:0048046 - apoplast, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0009626 - plant-type hypersensitive response, GO:0009617 - response to bacterium, GO:0000166 - nucleotide binding	TO:0000051 - stem strength, TO:0000733 - lignin biosynthesis trait, TO:0000011 - nitrogen sensitivity	PO:0009047 - stem , PO:0020104 - leaf sheath 
8732	CIF2		CROSS-INCOMPATIBILITY IN THE FEMALE REACTION 2				6		 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness				0		GO:0009856 - pollination, GO:0009566 - fertilization		
8733	SH-H	sh-h, OsSH-H, OsCPL1, CPL1	SHATTERING-H	carboxy-terminal domain phosphatase-like 1	CARBOXY-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 PROTEIN.	sh-h	7	sh-h is very close to the Rc gene. between RM7161 and RM8262 on chromosome 7. SH-H encodes a carboxy-terminal domain (CTD) phosphatase-like 1 (OsCPL1) protein that is similar to the metazoan CTD phosphatases, which are involved in cell differentiation. GQ328745. TO:0000930: seed shattering.	 Seed - Physiological traits - Shattering	Os07g0207700	LOC_Os07g10690.8, LOC_Os07g10690.7, LOC_Os07g10690.6, LOC_Os07g10690.1, LOC_Os07g10690.2, LOC_Os07g10690.3, LOC_Os07g10690.4		0		GO:0016020 - membrane, GO:0004721 - phosphoprotein phosphatase activity, GO:0005634 - nucleus	TO:0000473 - grain shattering	
8734	NADP-ME1	NADP-ME, ME6, OschlME, chlME, XcrMal1	NADP-MALIC ENZYME 1	"\"NADP-dependent malic enzyme, chloroplastic\", chloroplastic NADP malic enzyme, plastidic NADP-ME"	NADP-MALIC ENZYME 1		1	D16499. P43279. EC=1.1.1.40 miR169-p-target. XcrMal1 in Kishimoto et al. 1997.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0188400	LOC_Os01g09320.1	GR:0061037	0		GO:0006108 - malate metabolic process, GO:0004473 - malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, GO:0055114 - oxidation reduction, GO:0009507 - chloroplast, GO:0051287 - NAD or NADH binding, GO:0046872 - metal ion binding		
8735	NADP-ME2	OscytME1, OsNADP-ME2-3, NADP-ME2-3	NADP-MALIC ENZYME 2	cytosolic NADP malic enzyme 1	NADP-MALIC ENZYME 2	osnadp-me2	1	AB053295, Experimental results suggest that NADP-ME2 has a role in enhancing tolerance of plants to salt and osmotic stress. OsNADP-ME2-3 in Dangol et al. 2021. TO:0000975: grain width.  GO:0160020: positive regulation of ferroptosis. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os01g0723400	LOC_Os01g52500.5, LOC_Os01g52500.1, LOC_Os01g52500.2, LOC_Os01g52500.3, LOC_Os01g52500.4		0		GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0050832 - defense response to fungus, GO:0006108 - malate metabolic process, GO:0009739 - response to gibberellin stimulus, GO:0051287 - NAD or NADH binding, GO:0009740 - gibberellic acid mediated signaling, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0004473 - malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0042866 - pyruvate biosynthetic process, GO:0009626 - plant-type hypersensitive response, GO:0009507 - chloroplast, GO:0055114 - oxidation reduction	TO:0000397 - grain size, TO:0000455 - seed set percent, TO:0000447 - filled grain number, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000145 - internode length, TO:0000382 - 1000-seed weight, TO:0000074 - blast disease, TO:0002675 - gibberellic acid content, TO:0000734 - grain length	
8736	qSH3		Shattering (QTL)-3			qSH3-W	3		 Seed - Physiological traits - Shattering				0			TO:0000473 - grain shattering	
8737	SH4	sh4, SH4, SHAT2, SHA1, qSH4, QSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23	SHATTERING 4	grain shattering quantitative trait locus on chromosome 4, SHATTERING ABORTION2, shattering abortion 2, shattering 4, Shattering1, Myb/SANT-LIKE 23		sh4-1, sh4-2, shat2, qSH4-W, sh4	4	EF203243. DQ383398-DQ421814 (Oryza sativa and other wild rice species). GU220907-GU221049 (Oryza sativa and other wild rice species). EU999862-EU999948 (Oryza sativa and other wild rice species). EF203243 (O. rufipogon), EF203244 (indica). trihelix family of transcription factors. SHA1 in Lin et al. 2007. Myb3 family TF gene. OgSh4 in O. glaberrima. a Myb3 transcription factor.  AB330247, AB330272-AB330290. (Oryza sativa and other wild rice species). TO:0000930: seed shattering.	 Seed - Physiological traits - Shattering,  Tolerance and resistance - Stress tolerance	Os04g0670900	LOC_Os04g57530.1		0		GO:0005634 - nucleus, GO:0051409 - response to nitrosative stress, GO:0003677 - DNA binding	TO:0000473 - grain shattering	PO:0009047 - stem , PO:0025034 - leaf 
8738	DH1	OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16	DEGENERATED HULL 1	degenerated hull1, lateral organ boundaries domain 2-1	LOB DOMAIN-LIKE PROTEIN	dh1, DH1	2	In the dh1 mutant, all floral organs of the spikelets had absolutely degenerated and formed tumor-like organs. TO:0000816: inflorescence bract anatomy and morphology trait. a downstream gene of OsJMJ706.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0820500	LOC_Os02g57490.1		0		GO:0048437 - floral organ development, GO:0010311 - lateral root formation, GO:0005634 - nucleus	TO:0006022 - floral organ development trait, TO:0000240 - sterile lemma length	PO:0000016 - lateral root primordium 
8739	EL5	EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6, OsRING64, RING64	ELICITOR 5	E3 ubiquitin-protein ligase EL5, RING-type E3 ubiquitin ligase 64	E3 UBIQUITIN-PROTEIN LIGASE EL5		2	AB045120. Q9LRB7. ATL family, RING-H2 TYPE UBIQUITIN LIASE. EC=6.3.2.- GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Biochemical character	Os02g0559800	LOC_Os02g35329.1		0		GO:0008270 - zinc ion binding, GO:0004842 - ubiquitin-protein ligase activity, GO:0051301 - cell division, GO:0080033 - response to nitrite, GO:0019941 - modification-dependent protein catabolic process, GO:0016567 - protein ubiquitination, GO:0048364 - root development, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016874 - ligase activity, GO:0016021 - integral to membrane, GO:0009736 - cytokinin mediated signaling, GO:0009609 - response to symbiotic bacterium, GO:0008219 - cell death, GO:0005515 - protein binding, GO:0046872 - metal ion binding, GO:0009620 - response to fungus, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0009617 - response to bacterium		
8740	RRF1		RING FINGER 1	ATL family proteins.	RING FINGER 1		9		 Biochemical character				0		GO:0005515 - protein binding, GO:0008270 - zinc ion binding		
8741	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, OsSRS1, CL7(t), OsRELA, RELA	ERECT PANICLE 2	erect panical 2, Erect panicle2, erect panicle2-1, erect panicle2-2, dense and erect panicle 2, small and round seed 1, cleistogamy 7, cleistogamy gene on chromosome 7, regulator of leaf angle		ep2-1, ep2-2, dep2, dep2-1, dep2-2, srs1, srs1-1, srs1-2, srs1-3, srs1-4, srs1-5, cl7(t), rela	7	GQ449684. TO:0000800: inflorescence density (panicle density), TO:0000847: panicle anatomy and morphology trait. TO:0000756: stem internode anatomy and morphology trait. TO:0000882: cleistogamous flower. TO:0000975: grain width.	 Vegetative organ - Leaf,  Reproductive organ - Panicle, Mode of branching,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0616000	LOC_Os07g42410.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000472 - vascular bundle number, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending, TO:0000339 - stem thickness, TO:0000040 - panicle length, TO:0000557 - secondary branch number, TO:0000180 - spikelet fertility, TO:0000402 - grain width, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000397 - grain size, TO:0000051 - stem strength, TO:0002637 - leaf size, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000050 - inflorescence branching, TO:0000207 - plant height, TO:0002759 - grain number	PO:0009082 - spikelet floret , PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0005020 - vascular bundle 
8742	_	GW5, OsGW5, qSW5	_	seed width (QTL)-5			5	DQ991205, CL971152.	 Character as QTL - Grain quality				0			TO:0000402 - grain width, TO:0000590 - grain weight, TO:0000391 - seed size	
8743	RF1C	Rf-1C	RESTORATION OF FERTILITY 1C				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8744	RF1D	Rf-1D	RESTORATION OF FERTILITY 1D				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8745	RF1E	Rf-1E	RESTORATION OF FERTILITY 1E				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8746	RF1F	Rf-1F	RESTORATION OF FERTILITY 1F				10		 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration				0		GO:0007275 - multicellular organismal development		
8747	SDH1	sdh1, FP, sdh1-1	SUCCINATE DEHYDROGENASE SUBUNIT 1	"SUCCINATE:UBIQUINONE OXIDOREDUCTASE, Succinate dehydrogenase (ubiquinone) flavoprotein subunit, Succinate dehydrogenase subunit 1, Succinate dehydrogenase (ubiquinone) flavoprotein, \"Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial\", Flavoprotein subunit of complex II"	SUCCINATE DEHYDROGENASE SUBUNIT 1		7	LOC_Os07g04240. Q6ZDY8. EC=1.3.5.1	 Biochemical character	Os07g0134800	LOC_Os07g04240.1	GR:0100183	0		GO:0006099 - tricarboxylic acid cycle, GO:0000104 - succinate dehydrogenase activity, GO:0005739 - mitochondrion, GO:0005749 - mitochondrial respiratory chain complex II, GO:0015036 - disulfide oxidoreductase activity, GO:0050660 - FAD binding, GO:0006810 - transport, GO:0022900 - electron transport chain, GO:0005743 - mitochondrial inner membrane, GO:0008177 - succinate dehydrogenase (ubiquinone) activity, GO:0016491 - oxidoreductase activity, GO:0009055 - electron carrier activity		
8748	LPS1	SDH2, SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14, OsLPS1, OsSDH2-1	LATE PREMATURE SENESCENCE 1	SUCCINATE:UBIQUINONE OXIDOREDUCTASE, mitochondrial succinate dehydrogenase subunit B, ribosomal protein S14, succinate dehydrogenase (iron-sulphur protein subunit), chimeric SDH2-RPS14	SUCCINATE DEHYDROGENASE SUBUNIT 2	lps1	8	Q9S827. AB017427, AB017428, AB017429. D10414. The gene transcripts of sdhB and rps14 result from a single mRNA precursor by alternative splicing (Kubo et al. 1999).	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility,  Coloration - Others,  Character as QTL - Yield and productivity	Os08g0120000	LOC_Os08g02640.1, LOC_Os08g02640.2, LOC_Os08g02640.3, LOC_Os08g02640.4, LOC_Os08g02640.5		0		GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization, GO:0007005 - mitochondrion organization, GO:0005739 - mitochondrion, GO:0010229 - inflorescence development, GO:0000104 - succinate dehydrogenase activity, GO:0016491 - oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0006099 - tricarboxylic acid cycle	TO:0000621 - inflorescence development trait, TO:0000605 - hydrogen peroxide content, TO:0000455 - seed set percent, TO:0006032 - panicle size, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content, TO:0000396 - grain yield, TO:0001015 - photosynthetic rate, TO:0000295 - chlorophyll-b content, TO:0000249 - leaf senescence, TO:0000316 - photosynthetic ability, TO:0000639 - seed fertility, TO:0000522 - stomatal conductance, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000293 - chlorophyll-a content, TO:0000040 - panicle length, TO:0000447 - filled grain number	PO:0001054 - 4 leaf senescence stage , PO:0000025 - root tip , PO:0009072 - plant ovary , PO:0009066 - anther , PO:0001083 - inflorescence development stage , PO:0025034 - leaf 
8749	SDH3		SUCCINATE DEHYDROGENASE SUBUNIT 3	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 3		2	LOC_Os02g02940. Q6ZH92.	 Biochemical character	Os02g0121800	LOC_Os02g02940.1, LOC_Os02g02940.2		0		GO:0006121 - mitochondrial electron transport, succinate to ubiquinone, GO:0006099 - tricarboxylic acid cycle, GO:0046872 - metal ion binding, GO:0005749 - mitochondrial respiratory chain complex II, GO:0045273 - respiratory chain complex II, GO:0016021 - integral to membrane, GO:0000104 - succinate dehydrogenase activity		
8750	SDH4		SUCCINATE DEHYDROGENASE SUBUNIT 4	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 4		1	LOC_Os01g70980. Q942X4.	 Biochemical character	Os01g0935900	LOC_Os01g70980.1		0		GO:0045273 - respiratory chain complex II, GO:0016021 - integral to membrane, GO:0006099 - tricarboxylic acid cycle, GO:0046872 - metal ion binding, GO:0000104 - succinate dehydrogenase activity, GO:0005743 - mitochondrial inner membrane		
8751	SDH5		SUCCINATE DEHYDROGENASE SUBUNIT 5	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 5		4	LOC_Os04g34100. Q0JDA2.	 Biochemical character	Os04g0418000	LOC_Os04g34100.1		0		GO:0006099 - tricarboxylic acid cycle, GO:0080129 - proteasome core complex assembly, GO:0009853 - photorespiration, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005749 - mitochondrial respiratory chain complex II, GO:0051788 - response to misfolded protein, GO:0000104 - succinate dehydrogenase activity, GO:0045273 - respiratory chain complex II, GO:0005634 - nucleus		
8752	SDH6		SUCCINATE DEHYDROGENASE SUBUNIT 6	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 6		8	LOC_Os08g02080. Q6ZCC4.	 Biochemical character	Os08g0112800	LOC_Os08g02080.1, LOC_Os08g02080.2		0		GO:0005774 - vacuolar membrane, GO:0009853 - photorespiration, GO:0006099 - tricarboxylic acid cycle, GO:0005749 - mitochondrial respiratory chain complex II, GO:0019867 - outer membrane, GO:0009536 - plastid, GO:0045273 - respiratory chain complex II, GO:0000104 - succinate dehydrogenase activity		
8753	SDH7		SUCCINATE DEHYDROGENASE SUBUNIT 7	SUCCINATE:UBIQUINONE OXIDOREDUCTASE	SUCCINATE DEHYDROGENASE SUBUNIT 7		9	Q6H611.	 Biochemical character	Os09g0382500	LOC_Os09g21470.1		0		GO:0006099 - tricarboxylic acid cycle, GO:0000104 - succinate dehydrogenase activity, GO:0005743 - mitochondrial inner membrane, GO:0045273 - respiratory chain complex II		PO:0020103 - flag leaf , PO:0009029 - stamen , PO:0009037 - lemma , PO:0009038 - palea , PO:0009030 - carpel 
8754	RIM1	ONAC054, ONAC54, NAC54, ONAC054alpha, ONAC054beta	RICE DWARF VIRUS MULTIPLICATION 1	NAC domain-containing protein 054, NAC domain-containing protein 54	NAC DOMAIN-CONTAINING PROTEIN 54	rim1, rim1-1, rim1-2, rim1-3, rim1-4, rim1-5, rim1-6, rim1-7, rim1-8, onac054, onac054-1, onac054-2	3	Regulator of jasmonate signaling. rim1-1 mutant shows reduced susceptibility to RDV(rice dwarf virus) and also exhibits a semi-dwarf phenotype with shorter roots. AB265821. GO:0071485: cellular response to absence of light.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0119966	LOC_Os03g02800.1		0		GO:0009738 - abscisic acid mediated signaling, GO:0003700 - transcription factor activity, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane	TO:0000152 - panicle number, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000173 - ethylene sensitivity, TO:0000460 - light intensity sensitivity, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000249 - leaf senescence, TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000180 - spikelet fertility, TO:0000207 - plant height, TO:0000447 - filled grain number, TO:0000227 - root length, TO:0000316 - photosynthetic ability	PO:0001054 - 4 leaf senescence stage 
8755	OPR1	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR	12-OXOPHYTODIENOATE REDUCTASE 1	12-oxo-phytodienoic acid reductase 1, OPDA reductase	12-OXOPHYTODIENOATE REDUCTASE 1		6	Q84QK0. AB122088. AB040743. C96685, C96686, C26019, AU092237, C26097, AU093231.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os06g0216300	LOC_Os06g11290.1		0		GO:0010181 - FMN binding, GO:0002215 - defense response to nematode, GO:0009266 - response to temperature stimulus, GO:0009408 - response to heat, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000432 - temperature response trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002668 - jasmonic acid content, TO:0000384 - nematode damage resistance, TO:0000259 - heat tolerance	PO:0009051 - spikelet 
8756	OPR2	OsOPR2, OsOPR06-5	12-OXOPHYTODIENOATE REDUCTASE 2	12-oxo-phytodienoic acid reductase 2	12-OXOPHYTODIENOATE REDUCTASE 2		6	OPDA reductase. Q69TH4.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os06g0216200	LOC_Os06g11280.1		0		GO:0010181 - FMN binding, GO:0031408 - oxylipin biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0002215 - defense response to nematode, GO:0016629 - 12-oxophytodienoate reductase activity	TO:0000384 - nematode damage resistance	
8757	OPR3	OsOPR3, OsOPR06-4	12-OXOPHYTODIENOATE REDUCTASE 3	12-oxo-phytodienoic acid reductase 3	12-OXOPHYTODIENOATE REDUCTASE 3		6	OPDA reductase. Q69TH6.	 Biochemical character	Os06g0216000	LOC_Os06g11260.1		0		GO:0010181 - FMN binding, GO:0031408 - oxylipin biosynthetic process, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0016491 - oxidoreductase activity		
8758	OPR4	OsOPR4, OsOPR10, OsOPR06-3, OsOPR7	12-OXOPHYTODIENOATE REDUCTASE 4	12-oxo-phytodienoic acid reductase 4	12-OXOPHYTODIENOATE REDUCTASE 4		6	OPDA reductase. OPDAR. Q69TH8. AU057040, AU057041. OsOPR7 in Qiu et al. 2022.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0215900	LOC_Os06g11240.1		0		GO:0050832 - defense response to fungus, GO:0010181 - FMN binding, GO:0016491 - oxidoreductase activity, GO:0009266 - response to temperature stimulus, GO:0031408 - oxylipin biosynthetic process, GO:0016629 - 12-oxophytodienoate reductase activity	TO:0000074 - blast disease, TO:0000432 - temperature response trait	
8759	OPR5	OsOPR5, OsOPR6, OsOPR06-2, OPR4	12-OXOPHYTODIENOATE REDUCTASE 5	12-oxo-phytodienoic acid reductase 5	12-OXOPHYTODIENOATE REDUCTASE 5		6	OPDA reductase. Q69TI0. a gene in rice zygotes with paternal allele-dependent expression. OPR4 in Kachewar et al. 2019, Qiu et al. 2022.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0215600	LOC_Os06g11210.1		0		GO:0002215 - defense response to nematode, GO:0016491 - oxidoreductase activity, GO:0010181 - FMN binding, GO:0009695 - jasmonic acid biosynthetic process, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0031408 - oxylipin biosynthetic process, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009266 - response to temperature stimulus	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000432 - temperature response trait, TO:0000384 - nematode damage resistance	
8760	OPR6	OsOPR6, OsOPR4, OsOPR06-1	12-OXOPHYTODIENOATE REDUCTASE 6	12-oxo-phytodienoic acid reductase 6	12-OXOPHYTODIENOATE REDUCTASE 6		6	OPDA reductase. Q69TI2. LOC_Os06g11200.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0215500	LOC_Os06g11200.1		0		GO:0016629 - 12-oxophytodienoate reductase activity, GO:0010181 - FMN binding, GO:0016491 - oxidoreductase activity, GO:0050832 - defense response to fungus, GO:0031408 - oxylipin biosynthetic process	TO:0000074 - blast disease	
8761	OG1	OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1, OPR13, OPR3, OPR5, OPR9, OPR08-1, OsOPR8, OPR8	OPEN GLUME1	12-oxo-phytodienoic acid reductase 7, 12-oxophytodienoate reductase7, OPDA reductase 7, open glume 1	12-OXOPHYTODIENOATE REDUCTASE 7	og1	8	Q6Z965. OsOPR3 in Ye et al. 2019, Cheng et al. 2019. OsOPR7 in Zhang et al. 2019, Yu et al. 2020, Hu et al. 2021, Ma et al. 2022. OsOPR8 in Wang et al. 2023. TO:0000993: cellulose content.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance	Os08g0459600	LOC_Os08g35740.2, LOC_Os08g35740.1		0		GO:0007623 - circadian rhythm, GO:0052541 - plant-type cell wall cellulose metabolic process, GO:0010181 - FMN binding, GO:0002215 - defense response to nematode, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0051607 - defense response to virus, GO:0002213 - defense response to insect, GO:0009737 - response to abscisic acid stimulus, GO:0005777 - peroxisome, GO:0009828 - plant-type cell wall loosening, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0008643 - carbohydrate transport, GO:0009695 - jasmonic acid biosynthetic process, GO:0050832 - defense response to fungus	TO:0000384 - nematode damage resistance, TO:0000447 - filled grain number, TO:0000184 - seed anatomy and morphology trait, TO:0000696 - starch content, TO:0000424 - brown planthopper resistance, TO:0000396 - grain yield, TO:0002616 - flowering time, TO:0002668 - jasmonic acid content, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000269 - 100-seed weight, TO:0000020 - black streak dwarf virus resistance, TO:0006009 - lodicule anatomy and morphology trait	PO:0009047 - stem , PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009036 - lodicule , PO:0009039 - glume 
8762	OPR8	OsOPR8, OsOPR7, OsOPR02-1	12-OXOPHYTODIENOATE REDUCTASE 8	12-oxo-phytodienoic acid reductase 8	12-OXOPHYTODIENOATE REDUCTASE 8		2	OPDA reductase. Q0E0C6.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0559400	LOC_Os02g35310.1		0		GO:0010181 - FMN binding, GO:0031408 - oxylipin biosynthetic process, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0016491 - oxidoreductase activity		
8763	OPR9	OsOPR9, OsOPR01-2, OPR2	12-OXOPHYTODIENOATE REDUCTASE 9	12-oxo-phytodienoic acid reductase 9	12-OXOPHYTODIENOATE REDUCTASE 9		1	OPDA reductase. Q5ZC83. OPR2 in Kachewar et al. 2019.	 Biochemical character	Os01g0370000	LOC_Os01g27240.1		0		GO:0016491 - oxidoreductase activity, GO:0010181 - FMN binding, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0031408 - oxylipin biosynthetic process		
8764	OPR10	OsOPR10, OsOPR12, OsOPR01-1	12-OXOPHYTODIENOATE REDUCTASE 10	12-oxo-phytodienoic acid reductase 10	12-OXOPHYTODIENOATE REDUCTASE 10		1	OPDA reductase. Q0JMR0.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0369900	LOC_Os01g27230.1		0		GO:0010181 - FMN binding, GO:0016491 - oxidoreductase activity, GO:0031408 - oxylipin biosynthetic process, GO:0016629 - 12-oxophytodienoate reductase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
8765	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1	ALLENE OXIDE SYNTHASE 2	Allene oxide synthase 2, Cytochrome P450 74A2, Hydroperoxide dehydrase 2, allene oxide synthase-1	ALLENE OXIDE SYNTHASE 2	osaos, osaos2-1	3	AY310358. AY062258. AY055775. Q7XYS3. EC=4.2.1.92 OsAOS1 in Kobayashi et al. 2016, Yoeun et al. 2018, Lim et al. 2020. GO:0035864: response to potassium ion. TO:0006054: arsenic content trait. GO:1903840: response to arsenite(3-). GO:1903426: regulation of reactive oxygen species biosynthetic process. TO:0020090: zinc content trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance	Os03g0225900	LOC_Os03g12500.1		0		GO:0042594 - response to starvation, GO:0042742 - defense response to bacterium, GO:0010106 - cellular response to iron ion starvation, GO:0002221 - pattern recognition receptor signaling pathway, GO:0020037 - heme binding, GO:0002213 - defense response to insect, GO:0047987 - hydroperoxide dehydratase activity, GO:0050832 - defense response to fungus, GO:0002215 - defense response to nematode, GO:0031408 - oxylipin biosynthetic process, GO:0009055 - electron carrier activity, GO:0002237 - response to molecule of bacterial origin, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0004497 - monooxygenase activity, GO:0051365 - cellular response to potassium ion starvation, GO:0051607 - defense response to virus, GO:0080027 - response to herbivore, GO:0046685 - response to arsenic, GO:0016036 - cellular response to phosphate starvation, GO:0009695 - jasmonic acid biosynthetic process	TO:0000102 - phosphorus sensitivity, TO:0002668 - jasmonic acid content, TO:0000384 - nematode damage resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000008 - potassium sensitivity, TO:0000424 - brown planthopper resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000636 - relative shoot dry weight, TO:0000516 - relative root length, TO:0000261 - insect damage resistance, TO:0000031 - silicon sensitivity, TO:0001034 - relative plant height, TO:0000644 - relative root dry weight, TO:0000224 - iron sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0020142 - stem internode , PO:0020141 - stem node , PO:0020122 - inflorescence axis , PO:0009051 - spikelet 
8766	AOC	OsAOC, AOC1, OsAOC1, HB, CPM2, OsAOC4, AOC4	ALLENE OXIDE CYCLASE	allene oxide cyclase, coleoptile photomorphogenesis 2, hebiba, hebibaAOC	ALLENE OXIDE CYCLASE	cpm2, hebiba, hb, cpm2/osaoc, osaoc, osaoc1, aoc-2	3	AJ493664. The hebiba mutant is due to a genomic deletion of 169 kb, which contains 26 annotated genes. One of the genes encodes allene oxide cyclase (AOC), part of the jasmonate biosynthetic pathway, loss of which leads to jasmonate deficiency (Gutjahr et al. 2015). OsAOC4 in Wang et al. 2023. GO:0098542: defense response to other organism. GO:1900150: regulation of defense response to fungus. 	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Biochemical character	Os03g0438100	LOC_Os03g32314.1		0		GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0009269 - response to desiccation, GO:0009941 - chloroplast envelope, GO:0009651 - response to salt stress, GO:0002215 - defense response to nematode, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009695 - jasmonic acid biosynthetic process, GO:0010319 - stromule, GO:0009570 - chloroplast stroma, GO:0009535 - chloroplast thylakoid membrane, GO:0005886 - plasma membrane, GO:0016853 - isomerase activity, GO:0009620 - response to fungus, GO:0009414 - response to water deprivation, GO:0046423 - allene-oxide cyclase activity, GO:0009408 - response to heat	TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000403 - leaf-folder resistance, TO:0000276 - drought tolerance, TO:0000384 - nematode damage resistance, TO:0000259 - heat tolerance, TO:0002668 - jasmonic acid content, TO:0006001 - salt tolerance, TO:0000544 - mesocotyl length, TO:0000172 - jasmonic acid sensitivity, TO:0001007 - coleoptile length	PO:0009051 - spikelet 
8767	LOX-L2	OsLOX-L2, LOX1.1, LOX L-2, LOX-2, OsLOX2, LOX2	LIPOXYGENASE L2	Lipoxygenase 2, Lipoxygenase L-2	LIPOXYGENASE L2		3	EC=1.13.11.12 P29250. X64396. KC611028-KC611039 (O. sativa and wild rice species, partial cds). AF464895.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os03g0738600	LOC_Os03g52860.1		0		GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0048364 - root development, GO:0009611 - response to wounding, GO:0009507 - chloroplast, GO:0002213 - defense response to insect, GO:0055114 - oxidation reduction, GO:0031408 - oxylipin biosynthetic process, GO:0009266 - response to temperature stimulus, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009737 - response to abscisic acid stimulus, GO:0051707 - response to other organism, GO:0016165 - lipoxygenase activity, GO:0005506 - iron ion binding	TO:0000172 - jasmonic acid sensitivity, TO:0000403 - leaf-folder resistance, TO:0000074 - blast disease, TO:0000432 - temperature response trait	
8768	LOX2	LOX-2	LIPOXYGENASE 2		LIPOXYGENASE 2				 Seed - Physiological traits - Taste				0		GO:0055114 - oxidation reduction, GO:0031408 - oxylipin biosynthetic process, GO:0051707 - response to other organism, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0005506 - iron ion binding, GO:0016165 - lipoxygenase activity		
8769	LOX1	LOX-1	LIPOXYGENASE 1		LIPOXYGENASE 1				 Seed - Physiological traits - Taste				0		GO:0005506 - iron ion binding, GO:0055114 - oxidation reduction, GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process		
8770	LOX-RLL	OsLOX-RLL	LIPOXYGENASE RLL		LIPOXYGENASE RLL		8		 Biochemical character				0		GO:0005506 - iron ion binding, GO:0031408 - oxylipin biosynthetic process, GO:0055114 - oxidation reduction, GO:0016165 - lipoxygenase activity		
8771	LOX-RCI1	OsLOX-RCI1	LIPOXYGENASE RCI1		LIPOXYGENASE RCI1				 Biochemical character				0		GO:0031408 - oxylipin biosynthetic process, GO:0016165 - lipoxygenase activity, GO:0055114 - oxidation reduction, GO:0005506 - iron ion binding		
8772	R9-LOX1	Osr9-LOX1, OsLOX3, LOX3	R9-LIPOXYGENASE 1	9-lipoxygenase 1, lipoxygenase 3	R9-LIPOXYGENASE 1		3	a chloroplast-localized 9-LOX. AB099850. FJ660621, FJ660622, AP008209 (27849405-27853695). AY208920 (promoter region & partial cds).Q76I22. GO:1900366: negative regulation of defense response to insect. GO:1990136: linoleate 9S-lipoxygenase activity. GO:1901370: response to glutathione.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Biochemical character	Os03g0699700	LOC_Os03g49260.1, LOC_Os03g49260.2		0		GO:0005506 - iron ion binding, GO:0034440 - lipid oxidation, GO:0010311 - lateral root formation, GO:0031408 - oxylipin biosynthetic process, GO:0009409 - response to cold, GO:0009266 - response to temperature stimulus, GO:0050832 - defense response to fungus, GO:0009507 - chloroplast, GO:0016165 - lipoxygenase activity	TO:0000303 - cold tolerance, TO:0000432 - temperature response trait, TO:0000401 - plant growth hormone sensitivity, TO:0000476 - growth hormone content, TO:0000164 - stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0002668 - jasmonic acid content, TO:0000424 - brown planthopper resistance	
8773	EMF1	OsEMF1	EMBRYONIC FLOWER 1				1		 Seed - Morphological traits - Embryo				0		GO:0048573 - photoperiodism, flowering		
8774	OGR1	ogr1	OPAQUE AND GROWTH RETARDATION 1	opaque and growth retardation 1	PENTATRICOPEPTIDE REPEAT-DYW PROTEIN		12	FJ527826. pentatricopeptide repeat-DYW protein. RNA editing in mitochondria.	 Biochemical character	Os12g0270200	LOC_Os12g17080.1		0		GO:0009451 - RNA modification		
8775	MEF9		MITOCHONDRIAL EDITING FACTOR 9		MITOCHONDRIAL EDITING FACTOR 9				 Biochemical character				0		GO:0009451 - RNA modification		
8776	YL1	MTC, OsMTC, YGL8, OsYGL8, OsCRD1, CRD1, OsCRD, CRD, YL-1, PNZIP, OsPNZIP	YELLOW-LEAF 1	Mg-Proto IX monomethylester cyclase, yellow-green leaf 8, Copper Response Defect 1, Yellow-Leaf 1, PHARBITIS NIL LEUCINE ZIPPER	PHARBITIS NIL LEUCINE ZIPPER	ygl8, yl-1	1	GO:0036068: light-independent chlorophyll biosynthetic process. GO:1901401: regulation of tetrapyrrole metabolic process. a catalytic subunit of magnesium-protoporphyrin IX monomethyl ester cyclase (MgPME cyclase). TO:0006060: leaf chlorosis.	 Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0279100	LOC_Os01g17170.1, LOC_Os01g17170.2		0		GO:0009658 - chloroplast organization, GO:0019216 - regulation of lipid metabolic process, GO:0019344 - cysteine biosynthetic process, GO:0003677 - DNA binding, GO:0048529 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0015995 - chlorophyll biosynthetic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0010027 - thylakoid membrane organization, GO:0006364 - rRNA processing, GO:0005506 - iron ion binding, GO:0015979 - photosynthesis, GO:0009416 - response to light stimulus, GO:0051707 - response to other organism, GO:0010207 - photosystem II assembly, GO:0031408 - oxylipin biosynthetic process, GO:0009941 - chloroplast envelope, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009507 - chloroplast, GO:0009534 - chloroplast thylakoid, GO:0009668 - plastid membrane organization	TO:0000255 - sheath blight disease resistance, TO:0000293 - chlorophyll-a content, TO:0000316 - photosynthetic ability, TO:0002715 - chloroplast development trait, TO:0000298 - chlorophyll ratio, TO:0000326 - leaf color, TO:0000188 - drought sensitivity, TO:0000295 - chlorophyll-b content	PO:0025034 - leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
8777	AL12	al12	ALBINO 12				8	The leaves of the albino mutant al12 were white before the 3-leaf-stage at al12 were white before the 3-leaf-stage at a low temperature (<24C) and then gradually turned green. The gene al12 was located between the two close SSR markers RM5068 and RM3702.	 Coloration - Chlorophyll			GR:0060025	0		GO:0009658 - chloroplast organization, GO:0015994 - chlorophyll metabolic process	TO:0000299 - leaf lamina color, TO:0000495 - chlorophyll content	
8778	GM9	Gm9, Gm9(t)	GALL MIDGE RESISTANCE 9	Gall midge resistance-9				PO:0009011; plant structure ; PO:0000003; whole plant. 	 Tolerance and resistance - Insect resistance			GR:0061089	0		GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8779	GM10	Gm10, Gm10(t)	GALL MIDGE RESISTANCE 10	Gall midge resistance-10				PO:0009011; plant structure ; PO:0000003; whole plant. 	 Tolerance and resistance - Insect resistance			GR:0061090	0		GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8780	BPH21	Bph21(t)	BROWN PLANTHOPPER RESISTANCE 21 				12	BPH21 was introgressed from the wild rice species O. minuta (BC genome). KX681951.	 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8781	BPH20	Bph20(t)	BROWN PLANTHOPPER RESISTANCE 20  				4		 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8782	BPH13	Bph13(t)	BROWN PLANT HOPPER RESISTANT 13				3		 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8783	BU1	ILI4, OsILI4, OsBU1, BU1/ILI4, OsbHLH172, bHLH172	BRASSINOSTEROID UPREGULATED 1	BRASSINOSTEROID UPREGULATED1, Increased Leaf Inclination4, BR upregulated 1, basic helix-loop-helix protein 172			6	Q0DDF6. Transcription level is upregulated by BL application to rice. Helix-loop-helix protein. the closest homolog of PGL2.	 Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Other,  Seed - Morphological traits	Os06g0226500	LOC_Os06g12210.1		0		GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0005737 - cytoplasm, GO:0009741 - response to brassinosteroid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0046983 - protein dimerization activity, GO:0040008 - regulation of growth	TO:0000734 - grain length, TO:0002677 - brassinosteroid sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity	PO:0005052 - plant callus 
8784	BPH22	Bph22(t)	BROWN PLANTHOPPER RESISTANCE 22				6	Through single marker analysis ,it was found that the BPH resistant locus Bph22(t) was located at a distance of 6.7cM from the SSR markers RM 585,RM 225,RM 584,   RM 19429 and 12.7cM from RM 204 on the long arm of chromosome 6 with a probability value of 0.00.	 Tolerance and resistance - Insect resistance				0	6.7	GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8785	CSA	csa, OsCSA	CARBON STARVED ANTHER		CSA PROTEIN	csa, csa-1Nip, csa-2Nip	1	CSA encodes a rice R2R3 MYB transcription factor that regulates sugar partitioning from leaves to anthers required for the production of functional pollens. CSA regulates sugar partitioning from leaves to anthers. A mutant generated from 9522 cultivar in Shanghai. AP000837. R2R3-MYB. One of the candidate genes for the hybrid sterility gene S40 locus (Chen et al. 2017).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Biochemical character	Os01g0274800	LOC_Os01g16810.1		0		GO:0006109 - regulation of carbohydrate metabolic process, GO:0008643 - carbohydrate transport, GO:0009408 - response to heat, GO:0048572 - short-day photoperiodism, GO:0009648 - photoperiodism, GO:0003700 - transcription factor activity, GO:0009742 - brassinosteroid mediated signaling, GO:0009414 - response to water deprivation, GO:0009555 - pollen development, GO:0048653 - anther development	TO:0000276 - drought tolerance, TO:0000421 - pollen fertility, TO:0000229 - photoperiod sensitivity, TO:0000009 - genic male sterility-photoperiod sensitive, TO:0002677 - brassinosteroid sensitivity, TO:0000259 - heat tolerance, TO:0000696 - starch content	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
8786	GM11	Gm11t, Gm11(t), Gm11	GALL MIDGE RESISTANCE 11				12	A new gene conferring resistance to Asian rice gall midge biotypes 1,2,3 and 4. The gene is mapped between two flanking SSR markers, RM28574 and RM28706. PO:0009011; plant structure ; PO:0000003; whole plant. 	 Tolerance and resistance - Insect resistance			GR:0061091	0		GO:0009625 - response to insect	TO:0000423 - gall midge resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
8787	SDR4	Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L	SEED DORMANCY 4	Sdr4-like		Sdr4-n, Sdr4-k, Sdr4-k'	7	AB506455(Sdr4-k, Kasalath), AB510199(Sdr4-n, Nipponbare), PO:0009010; seed. GRO:0007045; 09-mature grain stage. Putative zinc finger protein. Pre-harvest sprouting resistance.	 Character as QTL - Germination,  Seed - Physiological traits - Dormancy	Os07g0585700	LOC_Os07g39700.1	GR:0060859	0		GO:0009738 - abscisic acid mediated signaling, GO:0009845 - seed germination	TO:0000253 - seed dormancy, TO:0000619 - vivipary, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed 
8788	COE1	coe1	COMMISSURAL VEIN EXCESSIVE1	commissural vein excessive1	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE	coe1-1, coe1-2, coe1-3	8	The coe1 mutants indicate the narrower interval of commissural vein and the cluster-like formation of commissural vein. 	 Vegetative organ - Leaf	Os08g0442700	LOC_Os08g34380.1, LOC_Os08g34380.2		0				
8789	SSG		SUBSTANDARD STARCH GRAIN					Mutants defective in starch grain morphology	 Seed - Morphological traits - Endosperm				0				
8790	RDD1	OsDof2, OsDof9, Dof9, OsDof-9, DLN64, OsDLN64, OsDof8, Dof8	RICE DOF DAILY FLUCTUATIONS 1	Dof zinc factor 9, Dof transcription factor 9, DLN repressor 64, DLN motif protein 64		Rdd1-1	2	Rdd1 is a putative Dof transcription factor gene that is associated with plant growth, grain size and flowering time in rice. AB028130. OsDof9 in Lijavetzky et al. 2003 and Zhang et al. 2015. OsDof8 in Liu et al. 2021.	 Seed,  Tolerance and resistance - Stress tolerance,  Other	Os02g0673700	LOC_Os02g45200.4, LOC_Os02g45200.3, LOC_Os02g45200.2, LOC_Os02g45200.1		0		GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000303 - cold tolerance	PO:0009005 - root 
8791	RDD2	OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3, OsDof24, Dof24	RICE DOF DAILY FLUCTUATIONS 2	AOBP-like protein gene, Rdd1-like gene, DNA binding of the One Finger 1, DNA binding with one finger protein 1, Dof protein 1, CYCLING DOF FACTOR 3, Dof zinc factor 23, Dof transcription factor 23		osdof1	7	AY224430. OsDof1 in Park et al. 2014. OsDof24 in Liu et al. 2021.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed	Os07g0685000	LOC_Os07g48570.1		0		GO:0008270 - zinc ion binding, GO:0009266 - response to temperature stimulus, GO:0007623 - circadian rhythm, GO:0010378 - temperature compensation of the circadian clock, GO:0003677 - DNA binding, GO:0009611 - response to wounding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009620 - response to fungus	TO:0000164 - stress trait, TO:0000432 - temperature response trait, TO:0000074 - blast disease	
8792	RDD3	OsDof26, Dof26, OsDof-26, OsDof27, Dof27	RICE DOF DAILY FLUCTUATIONS 3	Dof zinc factor 26, Dof transcription factor 26			10	similar to H-protein promoter binding factor-2a (nucleotide positions 102701-102537 and 101680-100454 AE017092. OsDof27 in Liu et al. 2021.	 Other,  Seed	Os10g0406300	LOC_Os10g26620.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		PO:0009005 - root 
8793	RDD4	OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12, OsDof11, Dof11	RICE DOF DAILY FLUCTUATIONS 4	CYCLING DOF FACTOR 1, Dof zinc factor 12, Dof transcription factor 12			3	AY224429. putative H-protein promoter binding factor-2a. OsDof11 in Liu et al. 2021. TO:0006044: magnesium content. TO:0020094: nitrate content.	 Seed,  Character as QTL - Plant growth activity,  Other,  Tolerance and resistance - Stress tolerance	Os03g0169600	LOC_Os03g07360.1		0		GO:0010037 - response to carbon dioxide, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0009646 - response to absence of light, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0010378 - temperature compensation of the circadian clock, GO:0042594 - response to starvation, GO:0009266 - response to temperature stimulus, GO:0051365 - cellular response to potassium ion starvation	TO:0000040 - panicle length, TO:0000276 - drought tolerance, TO:0000465 - mineral and ion content related trait, TO:0000008 - potassium sensitivity, TO:0000029 - chlorine sensitivity, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0006032 - panicle size, TO:0000609 - potassium content, TO:0000241 - leaf number, TO:0000207 - plant height, TO:0000014 - panicle weight, TO:0000568 - shoot weight, TO:0000357 - growth and development trait, TO:0000432 - temperature response trait, TO:0000460 - light intensity sensitivity	PO:0025034 - leaf , PO:0005020 - vascular bundle , PO:0020104 - leaf sheath 
8794	DOF1	OsDof1	DNA BINDING WITH ONE FINGER 1					AB028129	 Biochemical character				0				
8795	DOF4	OsDof4, OsDof8, Dof8, OsDof-8, DOF8, OsDof10, Dof10	DNA BINDING WITH ONE FINGER 4	Dof zinc factor 8, Dof transcription factor 8			2	AB028132. C91785, AU172851. OsDof10 in Liu et al. 2021. 	 Tolerance and resistance - Stress tolerance,  Other	Os02g0726300	LOC_Os02g49440.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress	TO:0000432 - temperature response trait	
8796	DOF5	OsDof5, OsDof6, Dof6, OsDof-6, DOF6	DNA BINDING WITH ONE FINGER 5	Dof zinc factor 6, Dof transcription factor 6, C2C2-Dof transcription factor			1	AB028133. HQ858825. OsDof6 in Lijavetzky et al. 2003, Yilmaz et al. 2009, Zhang et al. 2015.	 Biochemical character	Os01g0758200	LOC_Os01g55340.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8798	DOF7	OsDof7, Dof7, OsDof-7, OsDOF11, DOF11, OsDof9, Dof9	DNA BINDING WITH ONE FINGER 7	DNA BINDING WITH ONE FINGER 11		osdof11, osdof11-1	2	OsDOF11 in Wu et al. 2018. OsDof9 in Liu et al. 2021. GO:2000280: regulation of root development.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0707200	LOC_Os02g47810.1		0		GO:0010067 - procambium histogenesis, GO:0009409 - response to cold, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048364 - root development, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0010087 - phloem or xylem histogenesis, GO:0015770 - sucrose transport, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000207 - plant height, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000346 - tiller number, TO:0006005 - fructose content, TO:0006032 - panicle size, TO:0000300 - glucose content, TO:0000328 - sucrose content, TO:0000227 - root length	PO:0020110 - scutellum , PO:0000034 - vascular system , PO:0020141 - stem node , PO:0009005 - root , PO:0005020 - vascular bundle , PO:0000071 - companion cell , PO:0005421 - parenchyma 
8802	DOF11	OsDof11, Dof11, OsDof-11, OsDof13, Dof13	DNA BINDING WITH ONE FINGER 11	Dof zinc factor 11, Dof transcription factor 11			3	OsDof13 in Liu et al. 2021.	 Other	Os03g0585600	LOC_Os03g38870.1		0		GO:0009536 - plastid, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
8803	DOF13	OsDof13, Dof13, OsDof-13, OsDof14, Dof14	DNA BINDING WITH ONE FINGER 13	Dof zinc factor 13, Dof transcription factor 13			3	OsDof14 in Liu et al. 2021.	 Other	Os03g0619151	LOC_Os03g42200.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		PO:0025034 - leaf 
8804	DOF14	OsDof14, Dof14, OsDof-14, OsDof12, Dof12	DNA BINDING WITH ONE FINGER 14 	Dof zinc factor 14, Dof transcription factor 14			3	OsDof12 in Liu et al. 2021.	 Other	Os03g0276300	LOC_Os03g16850.1		0		GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
8805	SP3	OsDof15, Dof15, OsDof-15, DOF15	SHORT PANICLE 3	Dof zinc factor 15, Dof transcription factor 15, DNA BINDING WITH ONE FINGER 15, Short Panicle 3		sp3, osdof15-1, osdof15-2, osdof15-3, osdof15-4	3	TO:0000975: grain width. GO:2000280: regulation of root development.	 Other,  Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os03g0764900 	LOC_Os03g55610.1		0		GO:0009873 - ethylene mediated signaling pathway, GO:0008284 - positive regulation of cell proliferation, GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0010082 - regulation of root meristem growth, GO:0003677 - DNA binding, GO:0010081 - regulation of inflorescence meristem growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009690 - cytokinin metabolic process	TO:0000373 - inflorescence anatomy and morphology trait, TO:0000227 - root length, TO:0000434 - root activity, TO:0000173 - ethylene sensitivity, TO:0000656 - root development trait, TO:0002692 - root meristem development, TO:0000734 - grain length, TO:0006001 - salt tolerance, TO:0000592 - 1000-dehulled grain weight, TO:0000371 - yield trait, TO:0000396 - grain yield, TO:0002660 - cytokinin content, TO:0006032 - panicle size, TO:0000050 - inflorescence branching, TO:0000456 - spikelet number, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0000557 - secondary branch number	PO:0009049 - inflorescence 
8806	DOF16	OsDof16, Dof16, OsDof-16	DNA BINDING WITH ONE FINGER 16	Dof zinc factor 16, Dof transcription factor 16			3		 Other	Os03g0821200 	LOC_Os03g60630.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8807	DOF17	OsDof17, Dof17, OsDof-17, OsDof18, Dof18	DNA BINDING WITH ONE FINGER 17	Dof zinc factor 17, Dof transcription factor 17			4	OsDof18 in Liu et al. 2021.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0678400 	LOC_Os04g58190.1, LOC_Os04g58190.2, LOC_Os04g58190.3		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009010 - seed 
8808	DOF18	OsDof18, Dof18, OsDof-18, DLN119, OsDLN119, OsDof17, Dof17	DNA BINDING WITH ONE FINGER 18	Dof zinc factor 18, Dof transcription factor 18, DLN repressor 119, DLN motif protein 119			4	OsDof17 in Liu et al. 2021.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0567800 	LOC_Os04g47990.2, LOC_Os04g47990.1		0		GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009010 - seed 
8809	DOF19	OsDof19, Dof19, OsDof-19	DNA BINDING WITH ONE FINGER 19	Dof zinc factor 19, Dof transcription factor 19			5		 Tolerance and resistance - Stress tolerance,  Other	Os05g0112200 	LOC_Os05g02150.1		0		GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000303 - cold tolerance	
8810	DOF20	OsDof20, Dof20, OsDof-20, OsDof21, Dof21	DNA BINDING WITH ONE FINGER 20	Dof zinc factor 20, Dof transcription factor 20			6	OsDof21 in Liu et al. 2021.	 Other	Os06g0284500 	LOC_Os06g17410.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8811	DOF21	OsDof21, Dof21, OsDof-21, OsCDF2, CDF2, OsDof22, Dof22	DNA BINDING WITH ONE FINGER 21	Dof zinc factor 21, Dof transcription factor 21, CYCLING DOF FACTOR 2			7	OsDof22 in Liu et al. 2021.	 Other	Os07g0236700 	LOC_Os07g13260.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		PO:0009010 - seed 
8812	DOF22	OsDof22, Dof22, OsDof-22, OsDof23, Dof23	DNA BINDING WITH ONE FINGER 22	Dof zinc factor 22, Dof transcription factor 22			7	OsDof23 in Liu et al. 2021.	 Other	Os07g0508900	LOC_Os07g32510.1		0		GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
8813	DOF24	OsDof24, Dof24, OsDof-24, OsDof25, Dof25	DNA BINDING WITH ONE FINGER 24 	Dof zinc factor 24, Dof transcription factor 24			8	OsDof25 in Liu et al. 2021.	 Other	Os08g0490100 	LOC_Os08g38220.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		PO:0009010 - seed 
8814	DOF25	OsDof25, Dof25, OsDof-25, OsDof26, Dof26	DNA BINDING WITH ONE FINGER 25	Dof zinc factor 25, Dof transcription factor 25			9	OsDof26 in Liu et al. 2021.	 Other	Os09g0475800 	LOC_Os09g29960.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8815	DOF27	OsDof27, Dof27, OsDof-27, OsDof28, Dof28	DNA BINDING WITH ONE FINGER 27	Dof zinc factor 27, Dof transcription factor 27			10	one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening. OsDof28 in Liu et al. 2021.	 Other	Os10g0496000 	LOC_Os10g35300.1, LOC_Os10g35300.2		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		PO:0009005 - root 
8816	DOF28	OsDof28, Dof28, OsDof-28, OsDof29, Dof29	DNA BINDING WITH ONE FINGER 28	Dof zinc factor 28, Dof transcription factor 28			12	OsDof29 in Liu et al. 2021.	 Other	Os12g0569900 	LOC_Os12g38200.1		0		GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
8817	DOF29	OsDof29, Dof29, OsDof-29, OsDof20, Dof20, CRPG562, OsCRPG562	DNA BINDING WITH ONE FINGER 29	Dof zinc factor 29, Dof transcription factor 29, collar region-preferential gene 562			5	OsDof20 in Liu et al. 2021. one of five transcription factors downstream of LG1 (Jiang et al. 2023).	 Other	Os05g0440000 	LOC_Os05g36900.1		0		GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046872 - metal ion binding, GO:0003700 - transcription factor activity		PO:0006012 - leaf collar 
8818	DOF30	OsDof30, Dof30, OsDof-30	DNA BINDING WITH ONE FINGER 30	Dof zinc factor 30, Dof transcription factor 30			12		 Other	Os12g0590700 	LOC_Os12g39990.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
8820	PRR73	OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11, CCT11	PSEUDO-RESPONSE REGULATOR 73	A-type RR 20, pseudo-response regulator 3, CCT domain-containing gene 11, CCT (CO, CO-LIKE and TOC1) domain protein 11, CCT domain protein 11		osprr73, osprr73-C1, osprr73-C2, osprr73-C3	3	AB189040, AB189043. Q10N34, A2XFB7. GO:0035556: intracellular signal transduction. a rice ortholog of Arabidopsis gene for circadian clock component. ortholog of Arabidopsis circadian gene PRR7. GO:1901002: positive regulation of response to salt stress. GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000028: regulation of photoperiodism, flowering.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os03g0284100	LOC_Os03g17570.6, LOC_Os03g17570.5, LOC_Os03g17570.4, LOC_Os03g17570.3, LOC_Os03g17570.2, LOC_Os03g17570.1		0		GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering, GO:0000156 - two-component response regulator activity, GO:0010446 - response to alkalinity, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0048511 - rhythmic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000481 - alkali sensitivity, TO:0000608 - sodium content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content, TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0009006 - shoot system , PO:0009005 - root , PO:0006070 - mesophyll 
8821	PRR95	OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33	PSEUDO-RESPONSE REGULATOR 95	pseudo-response regulator 2, CCT domain-containing gene 33, CCT (CO, CO-LIKE and TOC1) domain protein 33, CCT domain protein 33			9	AB189041. Q689G6. MH09t0440700. a rice ortholog of Arabidopsis gene for circadian clock component. OsCaM1 target gene. OsPRR5 (OsPRR59) in Lu et al. 2020.	 Tolerance and resistance - Stress tolerance	Os09g0532400	LOC_Os09g36220.2, LOC_Os09g36220.1		0		GO:0009266 - response to temperature stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0048511 - rhythmic process, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0000156 - two-component response regulator activity, GO:0007623 - circadian rhythm, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010446 - response to alkalinity, GO:0010378 - temperature compensation of the circadian clock	TO:0000432 - temperature response trait, TO:0000481 - alkali sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
8822	PRR59	OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38, CCT38	PSEUDO-RESPONSE REGULATOR 59	pseudo-response regulator 5, CCT domain-containing gene 38, CCT (CO, CO-LIKE and TOC1) domain protein 38, CCT domain protein 38		osprr59, oscct38	11	a rice ortholog of Arabidopsis gene for circadian clock component.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date	Os11g0157600	LOC_Os11g05930.5, LOC_Os11g05930.1, LOC_Os11g05930.2, LOC_Os11g05930.3, LOC_Os11g05930.4		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0000156 - two-component response regulator activity, GO:0007623 - circadian rhythm, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0002616 - flowering time, TO:0000456 - spikelet number, TO:0000137 - days to heading, TO:0000207 - plant height	
8823	ZTL1	OsZTL1, OsFbox066, OsFbox66, Os_F0484, OsLKP2, LKP2, OsFBO8, FBO8	ZEITLUPE 1	F-box protein 66, F-box-type E3 ubiquitin ligase O8			2	LOV, F-box, Kelch repeat. Os_F0484 in Hua et al. 2011.		Os02g0150800	LOC_Os02g05700.1, LOC_Os02g05700.2		0				
8824	ZTL2	OsZTL2, OsFbox325, Os_F0374, ZTL1, OsFBO9, FBO9	ZEITLUPE 2	F-box protein 325, F-box-type E3 ubiquitin ligase O9			6	LOC_Os06g47890. LOV, F-box, Kelch repeat. ZTL1 in Matsuzaki et al. 2015. a rice ortholog of Arabidopsis gene for circadian clock component.		Os06g0694000	LOC_Os06g47890.1, LOC_Os06g47890.2		0		GO:0007623 - circadian rhythm		
8825	FKF1	OsFbox609, Os_F0370, OsFKF1, OsFBO10, FBO10	FLAVIN-BINDING, KELCH REPEAT, F BOX 1	"F-box protein 609, \"FLAVIN-BINDING, KELCH REPEAT, F-BOX 1\", F-box-type E3 ubiquitin ligase O10"		osfkf1	11	LOV, F-box, Kelch repeat. a rice ortholog of Arabidopsis gene for circadian clock component. 	 Reproductive organ - Heading date	Os11g0547000	LOC_Os11g34460.1, LOC_Os11g34460.2, LOC_Os11g34460.3		0		GO:0048573 - photoperiodism, flowering, GO:0009416 - response to light stimulus, GO:0007623 - circadian rhythm, GO:0010228 - vegetative to reproductive phase transition, GO:0009266 - response to temperature stimulus	TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000075 - light sensitivity, TO:0000432 - temperature response trait	
8826	UAM1	OsUAM1, RGP-1, Osgls1	UDP-ARABINOPYRANOSE MUTASE 1	UDP-Arabinopyranose Mutase 1, reversibly glycosylated polypeptide-1			3	LOC_Os03g40270. Q8H8T0. GO:0052691:UDP-arabinopyranose mutase activity. AF294725, AJ011078, Y18624.	 Biochemical character	Os03g0599800	LOC_Os03g40270.1		0		GO:0016866 - intramolecular transferase activity, GO:0030244 - cellulose biosynthetic process, GO:0005794 - Golgi apparatus		
8827	UAM2	OsUAM2	UDP-ARABINOPYRANOSE MUTASE 2	UDP-Arabinopyranose Mutase 2			4	LOC_Os04g56520. Q7FAY6. GO:0052691:UDP-arabinopyranose mutase activity.	 Biochemical character	Os04g0660400	LOC_Os04g56520.1, LOC_Os04g56520.2		0		GO:0005794 - Golgi apparatus, GO:0030244 - cellulose biosynthetic process, GO:0009651 - response to salt stress		
8828	UAM3	OsUAM3	UDP-ARABINOPYRANOSE MUTASE 3	UDP-Arabinopyranose Mutase 3			7	LOC_Os07g41360. Q6Z4G3. GO:0052691:UDP-arabinopyranose mutase activity. GO:0035884: arabinan biosynthetic process.	 Biochemical character	Os07g0604800	LOC_Os07g41360.1		0		GO:0030244 - cellulose biosynthetic process, GO:0009555 - pollen development, GO:0043668 - exine, GO:0010208 - pollen wall assembly, GO:0016866 - intramolecular transferase activity, GO:0010246 - rhamnogalacturonan I biosynthetic process, GO:0005794 - Golgi apparatus, GO:0042546 - cell wall biogenesis, GO:0043667 - pollen wall		PO:0001007 - pollen development stage 
8829	MKK1	OsMKK1, OsMEK2, MEK2, OsMAPKK1, MAPKK1, OsMAP2K2, MAP2K2	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1	MAPK kinase 1		osmkk1, OsMKK1S215A/T221A, OsMKK1S215D/ T221D, Osmek2, deltaOsmek2	6	EF529623 (OsMKK1), DQ989216 (OmMKK1-1), DQ989217 (OmMKK1-2). GO:0097707: ferroptosis. TO:0020089: iron content trait. GO:2000280: regulation of root development. TO:0020106: Indole-3-acetic acid content. GO:1905665: positive regulation of calcium ion import across plasma membrane. GO:0160020: positive regulation of ferroptosis. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0020089: iron content trait. TO:0006047: calcium content trait.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0147800	LOC_Os06g05520.1		0		GO:0043408 - regulation of MAPKKK cascade, GO:0048364 - root development, GO:0009734 - auxin mediated signaling pathway, GO:0042542 - response to hydrogen peroxide, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0070509 - calcium ion import, GO:0000165 - MAPKKK cascade, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0043068 - positive regulation of programmed cell death, GO:0044242 - cellular lipid catabolic process, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0002679 - respiratory burst during defense response, GO:0009626 - plant-type hypersensitive response	TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0000656 - root development trait, TO:0002672 - auxin content, TO:0001034 - relative plant height, TO:0000166 - gibberellic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000516 - relative root length	PO:0025034 - leaf 
8830	MKK3	OsMKK3, OsMAPKK3, MAPKK3, OsMEK8a, MEK8a, OsMEK3, MEK3	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3	MAPK kinase 3	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3	mkk3	6	EF529623 (Indica cultivar). OsMEK3 in Hong et al. 2022. PO:0030123: panicle inflorescence. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0473200	LOC_Os06g27890.4, LOC_Os06g27890.3, LOC_Os06g27890.2, LOC_Os06g27890.1		0		GO:2000033 - regulation of seed dormancy, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0048623 - seed germination on parent plant, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0002213 - defense response to insect	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000619 - vivipary, TO:0006001 - salt tolerance, TO:0000253 - seed dormancy, TO:0000424 - brown planthopper resistance	PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009049 - inflorescence 
8831	SMG1	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, OsSTS, STS	SMALL GRAIN 1	MAPK kinase 4, mitogen-activated protein kinase kinase 4, small grain1, LARGE11, large grain 11, salt-tolerant and small grains	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4	smg1, smg1-1, smg1-2, large11-1D, osmkk4, mapkk4, sts	2	DQ848674. Gene Expression Omnibus database: GSE15613. TO:0000970: panicle density. TO:0000847: panicle inflorescence morphology trait. TO:0000919: grain weight. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1901001: negative regulation of response to salt stress. GO:0080148: negative regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Biochemical character,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Insect resistance,  Seed - Morphological traits,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os02g0787300	LOC_Os02g54600.1		0		GO:0009651 - response to salt stress, GO:0042127 - regulation of cell proliferation, GO:0009690 - cytokinin metabolic process, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0080027 - response to herbivore, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0000165 - MAPKKK cascade, GO:0008283 - cell proliferation, GO:0009739 - response to gibberellin stimulus, GO:0002213 - defense response to insect, GO:0009735 - response to cytokinin stimulus, GO:0045595 - regulation of cell differentiation, GO:0009743 - response to carbohydrate stimulus, GO:0010200 - response to chitin, GO:0009409 - response to cold, GO:0010229 - inflorescence development, GO:0009751 - response to salicylic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0042742 - defense response to bacterium, GO:0006970 - response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0048364 - root development, GO:0005634 - nucleus	TO:0000547 - primary branch number, TO:0000455 - seed set percent, TO:0000074 - blast disease, TO:0000342 - panicle axis angle, TO:0000734 - grain length, TO:0000454 - stem borer resistance, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000447 - filled grain number, TO:0000382 - 1000-seed weight, TO:0000439 - fungal disease resistance, TO:0000557 - secondary branch number, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0000160 - UV light sensitivity, TO:0000040 - panicle length, TO:0002677 - brassinosteroid sensitivity, TO:0000656 - root development trait, TO:0000175 - bacterial blight disease resistance, TO:0000456 - spikelet number, TO:0000206 - leaf angle, TO:0000391 - seed size, TO:0000590 - grain weight, TO:0002759 - grain number, TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000516 - relative root length, TO:0001034 - relative plant height, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0002669 - diterpenoid phytoalexin content, TO:0002660 - cytokinin content	PO:0001083 - inflorescence development stage , PO:0007520 - root development stage , PO:0025034 - leaf , PO:0020104 - leaf sheath 
8832	MKK6	OsMKK6, OsMEK1, MEK1, OsMAPKK6, MAPKK6, OsMPKK6, MPKK6, OsMAP1, MAP1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6	MAPK kinase 6, mitogen-activated protein 1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6	osmkk6	1	DQ779790(Indica culativar). AF216314. Q5QN75. GO:2000280: regulation of root development. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0510100	LOC_Os01g32660.5, LOC_Os01g32660.4, LOC_Os01g32660.1, LOC_Os01g32660.2, LOC_Os01g32660.3		0		GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048364 - root development, GO:0009734 - auxin mediated signaling pathway, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0001034 - relative plant height, TO:0000656 - root development trait, TO:0002672 - auxin content, TO:0000160 - UV light sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000516 - relative root length, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002669 - diterpenoid phytoalexin content, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance	PO:0025034 - leaf 
8833	MKK10-2	OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMKK10.2, MKK10.2, OsMPKK10-2D, MPKK10-2D, MPKK10.2, OsMAPKK10-2, MAPKK10-2, OsMEK3. MEK3	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-2	MAPK kinase 10.2		mkk10-2ko, Cr-mkk10.2	3	EF666056 (Indica cultivar). GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. TO:0020106: Indole-3-acetic acid content. GO:1903276: regulation of sodium ion export across plasma membrane. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0225100	LOC_Os03g12390.1		0		GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0055078 - sodium ion homeostasis, GO:0009733 - response to auxin stimulus, GO:0010252 - auxin homeostasis, GO:0009734 - auxin mediated signaling pathway, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0040008 - regulation of growth, GO:0006952 - defense response, GO:0009737 - response to abscisic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000203 - bacterial leaf streak disease resistance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0020004 - shoot sodium content, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity, TO:0002672 - auxin content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000525 - sodium to potassium content ratio	PO:0025034 - leaf 
8834	MKK5	OsMKK5, BUD1, OsBUD1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5	MAPK kinase 5			6		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character	Os06g0191300	LOC_Os06g09180.1		0		GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009735 - response to cytokinin stimulus, GO:0048364 - root development, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000656 - root development trait, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0007520 - root development stage , PO:0025034 - leaf 
8835	MKK10-1	OsMKK10-1, MPKK10.1	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-1		MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-1		2	GO:0023014: signal transduction by protein phosphorylation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0694900	LOC_Os02g46760.1		0		GO:0032147 - activation of protein kinase activity, GO:0007346 - regulation of mitotic cell cycle, GO:0031098 - stress-activated protein kinase signaling pathway, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
8836	MKK10-3	MPKK10.3	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-3 				3	LOC_Os03g50550. GO:0023014: signal transduction by protein phosphorylation.	 Biochemical character	Os03g0713500	LOC_Os03g50550.1		0		GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0032147 - activation of protein kinase activity, GO:0007346 - regulation of mitotic cell cycle, GO:0031098 - stress-activated protein kinase signaling pathway		
8837	EMF2A	OsEMF2a, OsEMF2, EMF2, ZOS4-02, OsZOS4-02	EMBRYONIC FLOWER 2A	EMBRYONIC FLOWER 2, Embryonic Flower2a, zinc-finger protein TFIIIA class of Oryza sativa 4-02, ZPT of Oryza sativa 4-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-02	osemf2a, osemf2a-1, osemf2a-2, emf2a, emf2a-3, emf2a-4, emf2a-5	4	a component of PRC2 (Polycomb repressive complex 2). Polycomb group protein, Supressor of Zeste(12) homolog. a rice homolog of the Arabidopsis PcG gene Embryonic Flower2 (EMF2). Q0JF48. AY321106. KC609074-KC609086 (O. sativa and wild rice species, partial cds). ROS1a Target gene. PO:0030123: panicle inflorescence. PO:0030104: caryopsis fruit. TO:0001109: grain color trait. GO:0106185: histone H3-K37 methylation. GO:0071514:  genetic imprinting. GO:0010342: endosperm cellularization.	 Seed - Morphological traits - Embryo,  Reproductive organ - Heading date,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os04g0162100	LOC_Os04g08034.1, LOC_Os04g08034.2, LOC_Os04g08034.3, LOC_Os04g08034.4, LOC_Os04g08034.6, LOC_Os04g08034.5		0		GO:0007349 - cellularization, GO:0009960 - endosperm development, GO:0005622 - intracellular, GO:0006349 - genetic imprinting, GO:0008270 - zinc ion binding, GO:0009691 - cytokinin biosynthetic process, GO:0006325 - chromatin organization, GO:0009910 - negative regulation of flower development, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0009790 - embryonic development, GO:0010581 - regulation of starch biosynthetic process, GO:0010600 - regulation of auxin biosynthetic process, GO:0010342 - cellularization of endosperm, GO:0048316 - seed development, GO:0031490 - chromatin DNA binding, GO:0051726 - regulation of cell cycle, GO:0010431 - seed maturation, GO:0046872 - metal ion binding, GO:0030154 - cell differentiation	TO:0000300 - glucose content, TO:0006020 - shoot apical meristem development, TO:0000345 - seed viability, TO:0002653 - endosperm storage protein content, TO:0006005 - fructose content, TO:0000653 - seed development trait, TO:0000137 - days to heading, TO:0002661 - seed maturation, TO:0002672 - auxin content, TO:0000328 - sucrose content, TO:0000696 - starch content, TO:0000620 - embryo development trait, TO:0000622 - flower development trait, TO:0000487 - endosperm color, TO:0002660 - cytokinin content	PO:0009006 - shoot system , PO:0007633 - endosperm development stage , PO:0007631 - plant embryo stage , PO:0025281 - pollen , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root , PO:0009089 - endosperm , PO:0001170 - seed development stage 
8838	EMF2B	OsEMF2b, EMF2b, GW9, OsGW9, GW9/OsEMF2b	EMBRYONIC FLOWER 2B	EMBRYONIC FLOWER 2b, grain weight 9		osemf2b, emf2b, gw9	9	Q69KN0. Polycomb group protein, Suppressor of Zeste(12) homolog. a component of polycomb repression complex 2. Su(z)12 homolog. a PRC2 (Polycomb repressive complex 2) subunit. PO:0030123: panicle inflorescence. PO:0030104: caryopsis fruit.	 Character as QTL - Germination,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Embryo,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape	Os09g0306800	LOC_Os09g13630.1		0		GO:0005677 - chromatin silencing complex, GO:0031507 - heterochromatin formation, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0070734 - histone H3-K27 methylation, GO:0009908 - flower development, GO:0010187 - negative regulation of seed germination, GO:0001558 - regulation of cell growth, GO:0042127 - regulation of cell proliferation, GO:0046872 - metal ion binding, GO:0031490 - chromatin DNA binding, GO:0048573 - photoperiodism, flowering, GO:0048497 - maintenance of floral organ identity, GO:0005634 - nucleus, GO:0031519 - PcG protein complex, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0010336 - gibberellic acid homeostasis, GO:0030154 - cell differentiation, GO:0009740 - gibberellic acid mediated signaling	TO:0000137 - days to heading, TO:0000447 - filled grain number, TO:0000411 - seed length to width ratio, TO:0000382 - 1000-seed weight, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000346 - tiller number, TO:0000657 - spikelet anatomy and morphology trait, TO:0000430 - germination rate, TO:0002675 - gibberellic acid content, TO:0000590 - grain weight, TO:0002616 - flowering time, TO:0000339 - stem thickness, TO:0000397 - grain size, TO:0000145 - internode length, TO:0000557 - secondary branch number, TO:0006019 - floral organ identity	PO:0009006 - shoot system , PO:0025281 - pollen , PO:0020056 - tegmen , PO:0009047 - stem , PO:0025034 - leaf , PO:0009005 - root , PO:0007633 - endosperm development stage , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
8839	CLF	OsSET24, SDG711, EZ1, OsCLF, OsSDG711	CURLY LEAF	SET protein 24, polycomb protein EZ1, SET DOMAIN GROUP 711		sdg711	6	Polycomb group protein, Enhancer of Zeste(E(z)) like gene, E(z)-like gene. AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). H3K27 methyltransferase. a polycom repressive complex 2(PRC2) key subunit. GO:2000904: regulation of starch metabolic process.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Reproductive organ - Heading date,  Other,  Seed,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits	Os06g0275500	LOC_Os06g16390.1		0		GO:0009790 - embryonic development, GO:0005982 - starch metabolic process, GO:0009960 - endosperm development, GO:0016571 - histone methylation, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0048316 - seed development, GO:0051567 - histone H3-K9 methylation, GO:0010228 - vegetative to reproductive phase transition, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0045857 - negative regulation of molecular function, epigenetic, GO:0009965 - leaf morphogenesis, GO:0031047 - gene silencing by RNA, GO:0048574 - long-day photoperiodism, flowering, GO:0003677 - DNA binding, GO:0003727 - single-stranded RNA binding, GO:0006306 - DNA methylation, GO:0006349 - genetic imprinting, GO:0009294 - DNA mediated transformation, GO:0010048 - vernalization response, GO:0031519 - PcG protein complex, GO:0003700 - transcription factor activity	TO:0000621 - inflorescence development trait, TO:0006032 - panicle size, TO:0002616 - flowering time, TO:0000696 - starch content, TO:0000653 - seed development trait, TO:0000391 - seed size	PO:0020056 - tegmen , PO:0000230 - inflorescence meristem , PO:0007633 - endosperm development stage , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009089 - endosperm 
8840	IEZ1	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718, DLN84, OsDLN84	ENHANCER OF ZESTE 1	indica Enhancer of Zeste 1, SET protein 15, DLN repressor 84, DLN motif protein 84		osiez1	3	AF407010, AJ421722. HQ881586. Polycomb group protein, Enhancer of Zeste(E(z)) like gene, E(z)-like gene. a homolog of Arabidopsis PRC2. ortholog of Arabidopsis SWN. a homolog of Arabidopsis histone H3K27-specific methyltransferase genes SWINGER (SWN) and CURLY LEAF (CLF). GO:1990110: callus formation.	 Seed,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date,  Other	Os03g0307800	LOC_Os03g19480.1		0		GO:0048587 - regulation of short-day photoperiodism, flowering, GO:0003727 - single-stranded RNA binding, GO:0031519 - PcG protein complex, GO:0009960 - endosperm development, GO:0006349 - genetic imprinting, GO:0003677 - DNA binding, GO:0048575 - short-day photoperiodism, flowering, GO:0009790 - embryonic development	TO:0000428 - callus induction, TO:0002616 - flowering time	PO:0009089 - endosperm , PO:0020056 - tegmen 
8841	FIE1	OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154	FERTILIZATION-INDEPENDENT ENDOSPERM 1	FERTILIZATION-INDEPENDENT ENDOSPERM1, Fertilization-Independent Endosperm 1, dwarf and flower aberrant mutant, endosperm-specific gene 116		df, Epi-df, osfie1, fie1_1, fie1_2	8	Polycomb group protein, Extra Sex Combs (ESC)-like genes. an OsWD40 superfamily member protein. GO:2000014 regulation of endosperm development. Gene Expression Omnibus database: accession number GSE39298. df (Epi-df) might be an epigenetic mutant that is heritable but unstable with a low frequency of spontaneous reversion back to a normal. This allele causes a dwarf stature and various floral defects. FIS-PRC2 (FERTILIZATION-INDEPENDENT SEED-POLYCOMB REPRESSOR COMPLEX2) component.	 Seed - Morphological traits,  Vegetative organ - Culm,  Seed - Morphological traits - Endosperm,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Physiological traits - Storage substances	Os08g0137250	LOC_Os08g04290.1		0		GO:0043078 - polar nucleus, GO:0010342 - cellularization of endosperm, GO:0048316 - seed development, GO:0009409 - response to cold, GO:0000003 - reproduction, GO:0016571 - histone methylation, GO:0006349 - genetic imprinting, GO:0009790 - embryonic development	TO:0000391 - seed size, TO:0002653 - endosperm storage protein content, TO:0000455 - seed set percent, TO:0000653 - seed development trait, TO:0002673 - amino acid content	PO:0009089 - endosperm , PO:0001170 - seed development stage , PO:0020056 - tegmen 
8842	FIE2	OsFIE2, FIE, OsWD40-153, OsDWD46, DWD46	FERTILIZATION-INDEPENDENT ENDOSPERM 2	FERTILIZATION-INDEPENDENT ENDOSPERM2, Fertilization-Independent Endosperm 2, Polycomb protein OsFIE2, DWD motif- containing protein 46			8	Polycomb group protein, Extra Sex Combs (ESC)-like gene. a core polycomb repressive complex 2 (PRC2) component. GO:2000014 regulation of endosperm development. AY456262. C26788, AU164097, C26788, AU057691. GO:0061085: regulation of histone H3-K27 methylation. 	 Seed - Morphological traits - Endosperm,  Character as QTL - Yield and productivity	Os08g0137100	LOC_Os08g04270.1, LOC_Os08g04270.2, LOC_Os08g04270.3		0		GO:0009409 - response to cold, GO:0070734 - histone H3-K27 methylation, GO:0016571 - histone methylation, GO:0043078 - polar nucleus, GO:0006349 - genetic imprinting, GO:0000003 - reproduction		PO:0020056 - tegmen 
8843	MET1A	OsMET1a, OsMET1-1, MET1a, MET1-1, OsMET1, OsDMT702, DMT702	METHYLTRANSFERASE 1A	DNA methyltransferase 1-1, DNA methyltransferase 702	DNA METHYLTRANSFERASE 1A	osmet1, Osmet1-1, Omet1-2	3	Alternative splicing. DNA MTase. AF462029. Q7Y1I7. GO:0090116 C-5 methylation of cytosine. OsMET1 in Liu et al. 2019. GO:0071585: detoxification of cadmium ion. GO:0015691: cadmium ion transport. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0798300	LOC_Os03g58400.1		0		GO:0046686 - response to cadmium ion, GO:0051607 - defense response to virus, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0005515 - protein binding, GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0003677 - DNA binding, GO:0010216 - maintenance of DNA methylation, GO:0016458 - gene silencing, GO:0010069 - zygote asymmetric cytokinesis in the embryo sac, GO:0009910 - negative regulation of flower development, GO:0009294 - DNA mediated transformation, GO:0006349 - genetic imprinting	TO:0000020 - black streak dwarf virus resistance, TO:0000168 - abiotic stress trait	
8844	MET1B	OsMET1b, OsMET1-2, MET1b, MET1	METHYLTRANSFERASE 1B	DNA methyltransferase 1-2	DNA METHYLTRANSFERASE 1B	met1b	7	Alternative splicing. DNA MTase. BK001405, AP003855. B1Q3J6. a major CG methylase. MET1 in in Li et al. 2017. up-regulated after fertilization (Abiko et al. 2013). a target gene of OsMIR162a.	 Biochemical character	Os07g0182900	LOC_Os07g08500.1		0		GO:0003677 - DNA binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0006306 - DNA methylation, GO:0032502 - developmental process, GO:0009790 - embryonic development, GO:0010216 - maintenance of DNA methylation, GO:0005515 - protein binding, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0006349 - genetic imprinting	TO:0000357 - growth and development trait	
8845	EF6	ef6	EARLINESS 6				7		 Reproductive organ - Heading date				0		GO:0009648 - photoperiodism	TO:0000137 - days to heading	
8847	PI41	Pi41(t), Pi41	PYRICULARIA ORYZAE RESISTANCE 41 	Pyricularia grisea resistance 41, Magnaporthe grisea resistance 41, Blast resistance 41			12	Original strain is 93-11 (Indica).	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8848	PI38	Pi38, Pi-38	PYRICULARIA ORYZAE RESISTANCE 38	Magnaporthe grisea resistance 38, Blast resistance 38			11	Original line is Tadukan (Indica). Map position (79.1-88.7 cM).	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8849	PI32	Pi-32(t), Pi32(t)*, Pi32(t)	PYRICULARIA ORYZAE RESISTANCE 32	Magnaporthe grisea resistance 32, Blast resistance 32			12	Original line is IR64 (Indica).	 Tolerance and resistance - Disease resistance				0	47.5	GO:0009620 - response to fungus		
8850	PI31	Pi-31(t), Pi31(t)*, Pi31(t)	PYRICULARIA ORYZAE RESISTANCE 31	Magnaporthe grisea 31, Blast resistance 31			12	Original line is IR64 (Indica). 	 Tolerance and resistance - Disease resistance				0	44.3	GO:0009620 - response to fungus		
8852	BPH23	Bph23(t)	BROWN PLANTHOPPER RESISTANCE 23						 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8853	BPH24	Bph24(t)	BROWN PLANTHOPPER RESISTANCE 24						 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8854	ERF59	OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6	ETHYLENE RESPONSE FACTOR 59	ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN1-LIKE 1, ethylene response factor 59, APETALA2/ethylene-responsive element binding protein 6	ETHYLENE RESPONSE FACTOR 59	Ebl1-1	10		 Other	Os10g0390800	LOC_Os10g25170.1		0		GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
8855	BPH25	Bph25(t)	BROWN PLANTHOPPER RESISTANCE 25				6	BPH25 gene conferring resistance to BPH derived from a BPH-resistant indica rice cultivar, Oryza sativa ADR52	 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
8857	qAC9.3		amylose content (QTL) 9.3					HokkaiPL9	 Character as QTL - Grain quality				0				
8858	PI46	Pi46(t)	PYRICULARIA ORYZAE RESISTANCE 46	Magnaporthe grisea resistance 46, Blast resistance 46			11	Linkage analysis using susceptible F2 individuals showed that Pi46(t) was mapped between the markers RM224 and RM27360.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8859	DPL1		DOPPELGANGER 1	DOPPELGANGER1		DPL1-N+, DPL1-K-	1	DPL1 and DPL2 are  paralogous genes. AB534814. Functional DPL1 is essential for pollen gemination in vitro. other DPL1 orthologs AB534814-AB534855.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion	Os01g0258600	LOC_Os01g15448.1		0			TO:0000485 - sterility related trait	PO:0009066 - anther 
8860	DPL2		DOPPELGANGER 2	DOPPELGANGER2		DPL2-N-, DPL2-K+	6	DPL1 and DPL2 are paralogous genes. AB534856. Functional DPL2 is essential for pollen gemination in vitro. other DPL2 orthologs AB534856-AB534897. KF892880-KF892970.	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0184100	LOC_Os06g08510.1		0			TO:0000485 - sterility related trait	PO:0009066 - anther 
8861	PI42	Pi42(t), Pi-42(t)	PYRICULARIA ORYZAE RESISTANCE 42 	Pyricularia grisea resistance 42, Magnaporthe grisea resistance 42, Blast resistance 42			12	Original line is DHR9 (Indica). 	 Tolerance and resistance - Disease resistance	Os12g0281600	LOC_Os12g18374.1, LOC_Os12g18374.2		0		GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0009620 - response to fungus		
8862	PIKS	Pi-ks, Pi-s, Pik-s, Piks	PYRICULARIA ORYZAE RESISTANCE KS	Pyricularia oryzae resistance ks, Magnaporthe grisea resistance ks, Blast resistance ks			11	Original lines are the Shin 2, Aichi Asahi and Ishikari Shiroke groups (Japonica). Map position (115.1-117.3 cM). Pi-ks is one of the alleles in the Pi-k locus. 	 Tolerance and resistance - Disease resistance				0				
8863	XA33	Xa33	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 33 	Xanthomonas oryzae pv. oryzae resistance 33, Xanthomonas campestris pv. oryzae resistance-33, Xanthomonas oryzae pv. oryzae resistance-33, Xanthomonas resistance 33			7	XA33 gene was fine mapped on chromosome 7 between two SSR markers RMWR7.1 and RMWR7.6  (Kumar et al. 2011).	 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
8864	BSR1	OsRLCK278, RLCK278, PTK15, OsPTK15	BROAD-SPECTRUM RESISTANCE 1	Receptor-like Cytoplasmic Kinase 278, Protein Tyrosine Kinase 15	RECEPTOR-LIKE CYTOPLASMIC KINASE 278		9	BSR1 gene conferred remarkable resistance to both bacterial and fungal pathogens (Xanthomonas oryzae pv. oryzae (Xoo) and Magnaporthe grisea) when overexpressed in rice. targeted by osa-miR818 (Qin et al. 2017).	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0533600	LOC_Os09g36320.1		0		GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009066 - anther , PO:0001083 - inflorescence development stage 
8865	LGD1		LAGGING GROWTH AND DEVELOPMENT 1		von Willebrand factor type A (vWA) domain containing protein	LGD1.1	9	multiple transcripts from LGD1. lgd1 mutant showed slow growth and development.	 Vegetative organ	Os09g0502100	LOC_Os09g32540.1		0				
8872	PTB1	OsRING45, RING45	POLLEN TUBE BLOCKED 1 	RING-type E3 ubiquitin ligase 45	RING-TYPE E3 UBIQUITIN LIGASE	ptb1	5	PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate. LOC_Os05g05280.	 Reproductive organ - Pollination, fertilization, fertility	Os05g0145000	LOC_Os05g05280.1		0				
8873	PI47	Pi47, Pi47(t)	PYRICULARIA ORYZAE RESISTANCE 47 				11	Pi47 was identified in XZ3150 (indica rice cultivar Xiangzi 3150) and is located in the interval between RM206 and RM224 on chromosome 11.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8874	PI48	Pi48, Pi48(t)	PYRICULARIA ORYZAE RESISTANCE 48 				12	Pi48 was identified in XZ3150 (indica rice cultivar Xiangzi 3150) and is located in the interval between RM5364 and RM7102 on chromosome 12.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8875	RYMV2	OsCPR5-1, CPR5-1, OsRYMV2, OsCPR5.1, CPR5.1	RESISTANCE TO YELLOW MOTTLE 2	constitutive expresser of pathogenesis related genes 5-1		RYMV2-S1, RYMV2-S2, rymv2-R1, rymv2-R2, rymv2-R3, rymv2-R4, rymv2-R5, rymv2-R6, oscpr5.1, oscpr5.1-A1, oscpr5.1-A2, oscpr5.1-A3, oscpr5.1-B1, oscpr5.1-B2, oscpr5.1-B3, oscpr5.1-B4, oscpr5.1-B5, oscpr5.1-B6, oscpr5.1-B7, cpr5.1-B8, cpr5.1-B9, cpr5.1-B10, cpr5.1-B11, cpr5.1-B12	1	confers high resistance (no symptoms, no virus detection in ELISA) to Rice yellow motlle virus. a Rice Homolog of the Arabidopsis thaliana CPR5 Gene. KC977156, KC977153, KC977154, KC977151, KC977152, KF303596. Oryza glaberrima ORGLA01G0359000.1 corresponds to this gene.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance	Os01g0918500 	LOC_Os01g68970.3, LOC_Os01g68970.1, LOC_Os01g68970.2		0		GO:0051607 - defense response to virus, GO:0031348 - negative regulation of defense response, GO:0016020 - membrane, GO:0006952 - defense response, GO:0010150 - leaf senescence, GO:0010090 - trichome morphogenesis	TO:0000590 - grain weight, TO:0000346 - tiller number, TO:0000449 - grain yield per plant, TO:0000040 - panicle length, TO:0000088 - rice yellow mottle virus resistance	
8877	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1, OsIPA1, IPA1/OsSPL14	WEALTHY FARMER'S PANICLE	IDEAL PLANT ARCHITECTURE 1, Ideal Plant Architecture 1, Ideal Plant Architecture1, Squamosa promoter-binding-like protein 14, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14, Squamosa promoter binding protein like-14, IDEAL PLANT ARCHITECTURE1	SQUAMOSA PROMOTER BINDING  PROTEIN-LIKE 14	ipa1, spl14, OsSPL14WFP, OsSPL14ipa, OsSPL14-ST12, OsSPL14-Aikawa1, OsSPL14-Ri22, OsSPL14-Habataki, ipa1-1D, ipa1-2D, ipa1-3D, ipa1-4D, ipa1-10, ipa1-11, Ri22, ipa1-1D, ipa1-1	8	A QTL increases primary branch number on chromosome 8. Q7EXZ2. GU136674. Regulate panicle branching and grain yield. a target gene of miR-156. GO:2000905: negative regulation of starch metabolic process. TO:0000992: gibberellin biosynthesis trait. PO:0025570: vascular leaf development stage. GO:1902347: response to strigolactone. TO: inflorescence axis length. TO:0001061: inflorescence axis thickness. TO:0001063: panicle inflorescence internode length. TO:0001062: number of panicle internodes.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Seed,  Tolerance and resistance - Disease resistance,  Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Dormancy	Os08g0509600	LOC_Os08g39890.1		0		GO:0048316 - seed development, GO:0009740 - gibberellic acid mediated signaling, GO:0006350 - transcription, GO:0009607 - response to biotic stimulus, GO:0010187 - negative regulation of seed germination, GO:0005982 - starch metabolic process, GO:0008270 - zinc ion binding, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009626 - plant-type hypersensitive response, GO:0010432 - bract development, GO:0009755 - hormone-mediated signaling, GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0010050 - vegetative phase change, GO:0048366 - leaf development, GO:0045449 - regulation of transcription, GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0005634 - nucleus	TO:0000074 - blast disease, TO:0000135 - leaf length, TO:0000152 - panicle number, TO:0000447 - filled grain number, TO:0000357 - growth and development trait, TO:0000179 - biotic stress trait, TO:0000455 - seed set percent, TO:0000340 - total soluble sugar content, TO:0002675 - gibberellic acid content, TO:0000017 - anatomy and morphology related trait, TO:0002759 - grain number, TO:0000396 - grain yield, TO:0000166 - gibberellic acid sensitivity, TO:0000011 - nitrogen sensitivity, TO:0002637 - leaf size, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000175 - bacterial blight disease resistance, TO:0000050 - inflorescence branching, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0002689 - leaf sheath length, TO:0000547 - primary branch number, TO:0000303 - cold tolerance	PO:0025487 - bract primordium , PO:0025034 - leaf , PO:0007057 - 0 seed germination stage , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
8878	XA34	xa34(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 34			xa34	1	The locus of xa34(t) was defined to a 204 kb interval flanked by markers RM10929 and BGID25.	 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8879	XA35		XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 35				11		 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8880	XA36		XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 36				11		 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8881	XA37		"	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 37"						 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8882	G1L1	OsG1L1	G1 LIKE PROTEIN 1	OsG1-like 1	G1 LIKE PROTEIN 1	osg1l1	2	AB512490. Q0E3M2. B8AIK3. GO:0090698: post-embryonic plant morphogenesis. TO:0000847: panicle inflorescence morphology trait. TO:0001063: panicle inflorescence internode length. TO:0000975: grain width.	 Reproductive organ - Panicle, Mode of branching,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits - Grain shape,  Other,  Reproductive organ - Inflorescence	Os02g0166800	LOC_Os02g07030.3, LOC_Os02g07030.2, LOC_Os02g07030.1		0		GO:0010229 - inflorescence development, GO:0010228 - vegetative to reproductive phase transition, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0009416 - response to light stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription, GO:0003677 - DNA binding	TO:0000040 - panicle length, TO:0000397 - grain size, TO:0000392 - sterility or fertility trait, TO:0000547 - primary branch number, TO:0000276 - drought tolerance, TO:0000456 - spikelet number, TO:0000641 - primary branch length, TO:0000621 - inflorescence development trait, TO:0000050 - inflorescence branching, TO:0006030 - spikelet meristem identity, TO:0000734 - grain length, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0001170 - seed development stage , PO:0009105 - inflorescence branch meristem , PO:0006327 - spikelet meristem , PO:0000230 - inflorescence meristem , PO:0001083 - inflorescence development stage 
8883	G1L2	OsG1L2	G1 LIKE PROTEIN 2	OsG1-like 2	G1 LIKE PROTEIN 2	osg1l2	6	AB512491. Q652I1. A2YG32. GO:0090698: post-embryonic plant morphogenesis. PO:0030123: panicle inflorescence. TO:0000847: panicle inflorescence morphology trait. TO:0001063: panicle inflorescence internode length. TO:0000975: grain width.	 Reproductive organ - Panicle, Mode of branching,  Other,  Seed - Morphological traits - Grain shape,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Inflorescence	Os06g0672400	LOC_Os06g46030.1		0		GO:0009299 - mRNA transcription, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009416 - response to light stimulus, GO:0007275 - multicellular organismal development, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition	TO:0000040 - panicle length, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000456 - spikelet number, TO:0000397 - grain size, TO:0000557 - secondary branch number, TO:0000392 - sterility or fertility trait, TO:0000547 - primary branch number, TO:0006030 - spikelet meristem identity, TO:0000641 - primary branch length, TO:0000050 - inflorescence branching, TO:0000621 - inflorescence development trait	PO:0000230 - inflorescence meristem , PO:0009105 - inflorescence branch meristem , PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0009047 - stem , PO:0005052 - plant callus , PO:0020104 - leaf sheath , PO:0001083 - inflorescence development stage , PO:0006327 - spikelet meristem 
8884	G1L3	OsG1L3	G1 LIKE PROTEIN 3		G1 LIKE PROTEIN 3		2	AB512492. Q0DZF3. B8AH02. GO:0090698: post-embryonic plant morphogenesis.	 Other,  Tolerance and resistance - Stress tolerance	Os02g0623400	LOC_Os02g41460.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription, GO:0009416 - response to light stimulus, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0020104 - leaf sheath , PO:0001083 - inflorescence development stage 
8885	G1L4	OsG1L4	G1 LIKE PROTEIN 4		G1 LIKE PROTEIN 4		4	AB512493. Q7XRS1. A2XVI8. GO:0090698: post-embryonic plant morphogenesis.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0516200	LOC_Os04g43580.2, LOC_Os04g43580.1		0		GO:0009416 - response to light stimulus, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription, GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009047 - stem , PO:0009006 - shoot system 
8886	G1L5	OsG1L5, TAW1, OsTAW1	G1 LIKE PROTEIN 5	TAWAWA1	G1 LIKE PROTEIN 5	tawawa1-D, taw1-D1, taw1-D2, taw1, taw1-3, taw1 CR-1	10	AB512494. Q7XDD0. GO:0090698: post-embryonic plant morphogenesis. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Panicle, Mode of branching,  Other,  Reproductive organ - Inflorescence	Os10g0478000	LOC_Os10g33780.1		0		GO:0010073 - meristem maintenance, GO:0009909 - regulation of flower development, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010229 - inflorescence development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009416 - response to light stimulus, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0009299 - mRNA transcription, GO:0010228 - vegetative to reproductive phase transition, GO:0003677 - DNA binding, GO:0009742 - brassinosteroid mediated signaling, GO:0009737 - response to abscisic acid stimulus	TO:0002677 - brassinosteroid sensitivity, TO:0006031 - inflorescence size, TO:0000373 - inflorescence anatomy and morphology trait, TO:0006017 - meristem identity, TO:0006030 - spikelet meristem identity, TO:0000622 - flower development trait, TO:0000621 - inflorescence development trait, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0000230 - inflorescence meristem , PO:0001083 - inflorescence development stage , PO:0020148 - shoot apical meristem , PO:0009049 - inflorescence , PO:0007615 - flower development stage , PO:0005052 - plant callus , PO:0006327 - spikelet meristem , PO:0009005 - root 
8887	BLS1	OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1	BEAK LIKE SPIKELET 1	G1 LIKE PROTEIN 6, TRIANGULAR HULL1, TRIANGULAR HULL 1, BEAK LIKE SPIKELET1, abnormal ower and dwarf1, beak-shaped grain1, BEAK-SHAPED GRAIN 1, ABNORMAL FLOWER AND DWARF 1	G1 LIKE PROTEIN 6	th1, th1-1, bls1, bls1-1, bls1-2, s2-89, xd151, xd281, xd425, bsg1, bsg1-1, afd1	2	AB512495. Q6K5X1. A2XAV5. TO:1000024: palea morphology trait. GO:0090698: post-embryonic plant morphogenesis. GO:0045892: negative regulation of transcription, DNA-templated. PO:0030123: panicle inflorescence. TO:1000024: palea morphology trait.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os02g0811000	LOC_Os02g56610.1		0		GO:0003677 - DNA binding, GO:0051302 - regulation of cell division, GO:0048437 - floral organ development, GO:0010229 - inflorescence development, GO:0009908 - flower development, GO:0009416 - response to light stimulus, GO:0009299 - mRNA transcription, GO:0008361 - regulation of cell size, GO:0001558 - regulation of cell growth, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development	TO:0000040 - panicle length, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000421 - pollen fertility, TO:0000397 - grain size, TO:0002730 - grain shape, TO:0000614 - lemma shape, TO:0000145 - internode length, TO:0000621 - inflorescence development trait, TO:0000590 - grain weight, TO:0000657 - spikelet anatomy and morphology trait, TO:0000180 - spikelet fertility, TO:0000564 - spikelet width, TO:0000396 - grain yield, TO:0006011 - lodicule shape, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0002762 - width of grain with hull	PO:0009037 - lemma , PO:0025585 - floral organ formation stage , PO:0020032 - plumule , PO:0020104 - leaf sheath , PO:0001048 - palea development stage , PO:0001047 - lemma development stage , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009038 - palea , PO:0009049 - inflorescence 
8888	G1L7	OsG1L7	G1 LIKE PROTEIN 7		G1 LIKE PROTEIN 7		1	AB512496. Q941W1. A2XED8. GO:0090698: post-embryonic plant morphogenesis.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0828900	LOC_Os01g61310.1		0		GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009416 - response to light stimulus, GO:0009414 - response to water deprivation, GO:0009299 - mRNA transcription, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0020148 - shoot apical meristem , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0001083 - inflorescence development stage 
8889	G1L8	OsG1L8	G1 LIKE PROTEIN 8		G1 LIKE PROTEIN 8		5	AB512497. Q6ATW6. A2Y5N0. GO:0090698: post-embryonic plant morphogenesis.	 Other,  Tolerance and resistance - Stress tolerance	Os05g0472000	LOC_Os05g39500.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009299 - mRNA transcription, GO:0007275 - multicellular organismal development, GO:0009416 - response to light stimulus, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0001083 - inflorescence development stage , PO:0020148 - shoot apical meristem , PO:0009047 - stem , PO:0020104 - leaf sheath 
8890	G1L9	OsG1L9	G1 LIKE PROTEIN 9		G1 LIKE PROTEIN 9		5	AB512498. Q5W659. A2Y3I2. GO:0090698: post-embryonic plant morphogenesis.	 Other,  Tolerance and resistance - Stress tolerance	Os05g0347400	LOC_Os05g28040.1		0		GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009416 - response to light stimulus, GO:0009299 - mRNA transcription, GO:0007275 - multicellular organismal development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020148 - shoot apical meristem , PO:0001083 - inflorescence development stage , PO:0009005 - root 
8891	XA38	Xa38	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 38	Xanthomonas oryzae pv. oryzae resistance 38			4	Dominant gene effective against all the prevalent virulences in North India. Oryza nivara PR114(Xa38). This gene was originally named as Xa30 and renamed as Xa38. Approximately 35 cM chromosomal region on 4L, between RM317 and RM562, to be associated with BB resistance.Based on the map position of Xa38, three loci LOC_Os04g53030, LOC_Os04g53050 and LOC_Os04g53060 were considered as putative candidate genes.	 Tolerance and resistance - Disease resistance				0		GO:0042742 - defense response to bacterium		
8892	DRO1	Dro1, OsDRO1, OsSPR1, SPR1, DRO1/OsNGR3, OsNGR3, NGR3	DEEPER ROOTING 1	Deeper rooting 1, Short postembryonic roots 1		DRO1-kp, dro1	9	Deeper rooting (large root growth angle).Position:16679.5-17287.9kbp(IRGSP4). AB689742, AB689741.	 Character as QTL - Root activity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os09g0439800	LOC_Os09g26840.1		0		GO:0048364 - root development, GO:0009629 - response to gravity, GO:0034059 - response to anoxia, GO:0009414 - response to water deprivation	TO:0002693 - gravity response trait, TO:0000656 - root development trait, TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance, TO:0000153 - relative yield	PO:0007520 - root development stage , PO:0006085 - root meristem 
8893	STA1	Sta1	STELE TRANSVERSAL AREA 1				9		 Character as QTL - Root activity				0				
8894	qFLL9	qFLL9	FLAG LEAF LENGTH 9				9	Lijiangxintuanheigu(LTD). qFLL9 was mapped between SSR marker RM24423 and RM24434.	 Character as QTL - Plant growth activity,  Vegetative organ - Leaf				0				
8896	MEL2	OsMEL2, OsRING430, RING430	MEIOSIS ARRESTED AT LEPTOTENE 2	MEIOSIS ARRESTED AT LEPTOTENE2, RING-type E3 ubiquitin ligase 430	PROTEIN AGRONAUTE MEL2	mel2-1, mel2-2	12	MEL2 protein plays an essential role in promoting premeiotic G1/S-phase transition in rice, Tos17 insertion line ND00287(mel2-1), NE04525(mel2-2), AB522964, RNA recognition motif(RRM) protein	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0572800	LOC_Os12g38460.1		0		GO:0003723 - RNA binding		
8897	PI45		reserved gene										0				
8898	VR1		VACUOLATION RETARDATION 1				4	VR1 is located between the molecular markers RM17411 and RM5030, at the distances of 0.7 and 1.5cM, respectively, on chromosome 4. 	 Reproductive organ - Pollination, fertilization, fertility				0				
8899	PI46	Pi46(t)	PYRICULARIA ORYZAE RESISTANCE 46 	Magnaporthe grisea resistance 46, Blast resistance 46			4	Pi46(t) was mapped between two SSR markers, RM6748 and RM5473, on the terminal region of the long arm of chromosome 4. Original line is Chumroo.	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus		
8900	GW2	OsGW2, OsRING429, RING429, GNL44, OsGNL44	GRAIN WEIGHT 2	GRAIN WIDTH AND WEIGHT2, Grain width 2, RING-type E3 ubiquitin ligase 429, GRAIN NUMBER AND LARGE GRAIN SIZE 44	RING-TYPE E3 UBIQUITIN LIGASE 429	GW2-A, GW2-B, gw2, gw2-1, gw2-2, gw2-c1, gw2-c2, gnl44	2	EF447275. a homolog of Arabidopsis E3 ubiquitin ligase DA2. KC609022-KC609034 (O. sativa and wild rice species, partial cds). PO:0030123: panicle inflorescence. GO:0061630: ubiquitin protein ligase activity. PO:0030123: panicle inflorescence. TO:0001069: cooking quality trait.	 Character as QTL - Yield and productivity,  Seed - Physiological traits - Taste,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape	Os02g0244100	LOC_Os02g14720.1, LOC_Os02g14720.2		0		GO:0005829 - cytosol, GO:0080050 - regulation of seed development, GO:0005737 - cytoplasm, GO:0051302 - regulation of cell division, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity, GO:0006109 - regulation of carbohydrate metabolic process, GO:0030308 - negative regulation of cell growth	TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000097 - amylopectin content, TO:0000447 - filled grain number, TO:0000409 - peak viscosity, TO:0000211 - gel consistency, TO:0000590 - grain weight, TO:0000391 - seed size, TO:0000374 - breakdown viscosity, TO:0000196 - amylose content, TO:0000397 - grain size, TO:0000402 - grain width, TO:0002653 - endosperm storage protein content, TO:0000040 - panicle length, TO:0000487 - endosperm color, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0002658 - starch grain synthesis, TO:0000396 - grain yield, TO:0000266 - chalky endosperm	PO:0009005 - root , PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0009066 - anther , PO:0005360 - aleurone layer 
8901	GBSSII	GBSS2, OsGBSSII, OsGBSS2	GRANULE BOUND STARCH SYNTHASE II	Granule-bound starch synthase Ib, Granule-bound starch synthase II	GRANULE BOUND STARCH SYNTHASE II		7	AY069940. FJ811002-FJ811042 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901890-DQ901918 (wild rice species). EF069642-EF069713 (O.sativa and wild rice species). GQ150865.	 Seed - Physiological traits - Storage substances,  Biochemical character,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance	Os07g0412100	LOC_Os07g22930.4, LOC_Os07g22930.3, LOC_Os07g22930.2		0		GO:0019252 - starch biosynthetic process, GO:0005982 - starch metabolic process, GO:0004373 - glycogen (starch) synthase activity, GO:0009408 - response to heat, GO:0010229 - inflorescence development, GO:0009269 - response to desiccation, GO:0009011 - starch synthase activity	TO:0000196 - amylose content, TO:0000621 - inflorescence development trait, TO:0000259 - heat tolerance, TO:0000696 - starch content, TO:0000382 - 1000-seed weight, TO:0000266 - chalky endosperm, TO:0000394 - drought related trait	PO:0009072 - plant ovary , PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0009009 - plant embryo 
8903	CRL3	crl3	CROWN ROOTLESS 3				3	CRL3 locus was located between the molecular marker I03_F (94.9cM) and K08_20, which are covered by two BAC clones; AC091246 and AC092390.	 Vegetative organ - Root				0				
8904	CRL4	OsGNOM1, GNOM1, CRL4/GNOM1, CRL2/CRL3	CROWN ROOTLESS 4	crown rootless4		crl4, gnom1-1, gnom1-2, gnom1-3, gnom1-4	3	a guanine nucleotide exchange factor for ADP ribosylation factor. OsGNOM1 was mapped to the long arm of chromosome 3 between the single sequence repeat (SSR) marker RM15621 and a sequence-tagged site (STS) marker STS18. EAY91294. CRL2/CRL3 in Phule et al. 2018.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0666100	LOC_Os03g46330.1		0		GO:0010540 - basipetal auxin transport, GO:0016192 - vesicle-mediated transport, GO:0032012 - regulation of ARF protein signal transduction, GO:0048765 - root hair cell differentiation, GO:0009826 - unidimensional cell growth, GO:0000911 - cytokinesis by cell plate formation, GO:0001736 - establishment of planar polarity, GO:0005086 - ARF guanyl-nucleotide exchange factor activity, GO:0005802 - trans-Golgi network, GO:0080119 - ER body organization, GO:0009942 - longitudinal axis specification, GO:0007155 - cell adhesion, GO:0034059 - response to anoxia, GO:0010087 - phloem or xylem histogenesis, GO:0010292 - GTP:GDP antiporter activity		
8905	PUL	OsPUL, SDBE, OsPUL3, RE	PULLULANASE	R-enzyme, starch debranching enzyme	PULLULANASE		4	D50602, AB012915. FJ918761-FJ918822 (wild rice species). OsPUL3 (LOC_Os04g08270) in Lu et al. 2012.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0164900		GR:0061189	0		GO:0051060 - pullulanase activity, GO:0004556 - alpha-amylase activity, GO:0005975 - carbohydrate metabolic process, GO:0009413 - response to flooding	TO:0000286 - submergence sensitivity	PO:0009089 - endosperm 
8906	RSR1	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b	RICE STRACH REGULATOR 1	AP2/EREBP family transcription factor, APETALA2/ethylene-responsive element binding protein 90, Rice Starch Regulator1, APETALA2-1, DLN repressor 130, DLN motif protein 130	RICE STRACH REGULATOR 1	rsr1	5	AY685117. rsr1 mutants have a larger seed size and increased seed mass and yield. RSR1 overexpression suppresses the expression of starch systhesis genes. qHD5 in Zhan et al. 2015 and Sun et al. 2016. qHD5 is a major and novel QTL for HD which was pleiotropic and was limited to a 309.52 Kb region (between RM17788-RM5374 oc chromosome 5) (Zhan et al. 2015). This gene (LOC_Os05g03040) was concluded to be the most probable candidate gene for qHD5 (Sun et al. 2016). AP2-1 in Dai et al. 2016. miR172a-d  target gene.	 Reproductive organ - Heading date,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os05g0121600	LOC_Os05g03040.3, LOC_Os05g03040.2, LOC_Os05g03040.1		0		GO:0009887 - organ morphogenesis, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010228 - vegetative to reproductive phase transition, GO:0010581 - regulation of starch biosynthetic process, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0048437 - floral organ development, GO:0048573 - photoperiodism, flowering, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0006351 - transcription, DNA-dependent	TO:0006030 - spikelet meristem identity, TO:0000397 - grain size, TO:0000259 - heat tolerance, TO:0006032 - panicle size, TO:0000382 - 1000-seed weight, TO:0000137 - days to heading	
8907	ACT2	OsACT2, Act2	ACTIN 2		ACTIN 2		3	EU155408	 Biochemical character				0		GO:0003774 - motor activity, GO:0005856 - cytoskeleton, GO:0005524 - ATP binding, GO:0015629 - actin cytoskeleton, GO:0005515 - protein binding, GO:0005737 - cytoplasm		
8908	BGLU13	OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13	BETA-GLUCOSIDASE 13	beta-glucosidase 13, tuberonic acid glucoside beta-glucosidase 1, tuberonic acid glucoside hydrolyzing beta-glucosidase 1	BETA-GLUCOSIDASE 13		4	Glycosyl hydrolase family 1 (GH1). BAF14985. Q7XKV2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0474900	LOC_Os04g39900.1		0		GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
8909	PTR1	OsPTR1, OsNPF8.2, NPF8.2	PROTEIN TRANSPORTER 1	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.2	PROTEIN TRANSPORTER 1		7	peptide transporter (PTR) gene family.	 Biochemical character	Os07g0100600	LOC_Os07g01070.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0006857 - oligopeptide transport		
8910	PTR2	OsPTR2, OsNPF2.2, NPF2.2	PROTEIN TRANSPORTER 2	nitrate transporter 1/peptide transporter family 2.2, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 2.2	PROTEIN TRANSPORTER 2	osnpf2.2, osnpf2.2-1, osnpf2.2-2	12	peptide transporter (PTR) gene family. TO:0020094: nitrate content. TO:0020098: nitrate sensitivity. TO:0020099: nitrate transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0638200	LOC_Os12g44100.1		0		GO:0010167 - response to nitrate, GO:0044464 - cell part, GO:0001944 - vasculature development, GO:0005215 - transporter activity, GO:0015706 - nitrate transport, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0034059 - response to anoxia		PO:0000034 - vascular system 
8911	RBLS5	PTR3, OsPTR3, PTR3-A, OsPTR3-A, OsNPF5.5, NPF5.5, OsRBLS5	RESISTANCE TO BACTERIAL LEAF STREAK 5	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 5.5, resistance to bacterial leaf streak 5	PROTEIN TRANSPORTER 3		10	peptide transporter (PTR) gene family. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0470700	LOC_Os10g33210.1		0		GO:0005215 - transporter activity, GO:0031667 - response to nutrient levels, GO:0019740 - nitrogen utilization, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium	TO:0000011 - nitrogen sensitivity, TO:0000203 - bacterial leaf streak disease resistance	
8912	PTR4	OsPTR4, OsNPF7.1, NPF7.1	PROTEIN TRANSPORTER 4	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.1	PROTEIN TRANSPORTER 4		7	peptide transporter (PTR) gene family.	 Biochemical character	Os07g0603800	LOC_Os07g41250.2, LOC_Os07g41250.1		0		GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8913	PTR5	OsPTR5, OsNPF7.4, NPF7.4	PROTEIN TRANSPORTER 5	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.4	PROTEIN TRANSPORTER 5		4	peptide transporter (PTR) gene family.	 Biochemical character	Os04g0597600	LOC_Os04g50940.1, LOC_Os04g50940.2		0		GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
8914	PTR6	OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3	PROTEIN TRANSPORTER 6	PTR/NRT1 transporter 6, nitrate transporter 1/peptide transporter family 7.3, PTR/NRT1 family 7.3, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.3	PROTEIN TRANSPORTER 6		4	peptide transporter (PTR) gene family. AY305030. TO:0020093: nitrogen content. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character	Os04g0597800	LOC_Os04g50950.1		0		GO:0005774 - vacuolar membrane, GO:0005215 - transporter activity, GO:0016020 - membrane, GO:0010167 - response to nitrate, GO:0045848 - positive regulation of nitrogen utilization, GO:0015197 - peptide transporter activity, GO:0044270 - nitrogen compound catabolic process	TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0002673 - amino acid content, TO:0000152 - panicle number, TO:0000346 - tiller number	PO:0020121 - lateral root , PO:0009047 - stem 
8915	PTR7	OsPTR7, OsNPF8.1, NPF8.1, OsNPF8.10, NPF8.10	PROTEIN TRANSPORTER 7	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.1	PROTEIN TRANSPORTER 7	osptr7-1, osptr7-2	1	peptide transporter (PTR) gene family. TO:1000052: shoot system arsenic content. OsNPF8.10 in Jung et al. 2021.	 Biochemical character	Os01g0142800	LOC_Os01g04950.4, LOC_Os01g04950.3, LOC_Os01g04950.2, LOC_Os01g04950.1		0		GO:0006857 - oligopeptide transport, GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		PO:0020141 - stem node , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system 
8916	PTR8	OsPTR8, OsNPF8.5, NPF8.5	PROTEIN TRANSPORTER 8	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.5	PROTEIN TRANSPORTER 8		3	peptide transporter (PTR) gene family.	 Biochemical character	Os03g0719900	LOC_Os03g51050.1		0		GO:0006857 - oligopeptide transport, GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
8917	ABI3		ABA INSENSITIVE 3		BZIP-TYPE TRANSCRIPTION FACTOR ABI3				 Reproductive organ - Pollination, fertilization, fertility				0				
8918	PPS	OsWD40-55, OsCOP1, COP1, YEL, OsYEL, OsPPS, COP1-1, OsCOP1-1, OsRING347, RING347	PETER PAN SYNDROME	COP1 ortholog, CONSTITUTIVE PHOTOMORPHOGENIC 1, yellowish-pericarp embryo lethal, RING-type E3 ubiquitin ligase 347		pps-1, pps-2, yel-hc, yel-sk, yel-cc, Oscop1	2	Rice pps is a heterochronic mutant that shows a prolonged juvenile phase. In addition, pps shows early flowering. Germplasm: Taichung 65. AB040053. TO:0000748: leaf anatomy and morphology trait. AF261992, AF289544. OsRFP (RING finger protein). lodging resistance. TO:0000756: stem internode anatomy and morphology trait. 	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Coloration - Others,  Heterochrony,  Reproductive organ - Heading date,  Seed - Morphological traits - Embryo,  Seed - Physiological traits - Dormancy	Os02g0771100	LOC_Os02g53140.1		0		GO:0009793 - embryonic development ending in seed dormancy, GO:0009637 - response to blue light, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0006281 - DNA repair, GO:0009641 - shade avoidance, GO:0009640 - photomorphogenesis, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity, GO:0010119 - regulation of stomatal movement, GO:0010224 - response to UV-B, GO:0046685 - response to arsenic, GO:0046283 - anthocyanin metabolic process, GO:0010228 - vegetative to reproductive phase transition, GO:0009628 - response to abiotic stimulus, GO:0009416 - response to light stimulus, GO:0009266 - response to temperature stimulus, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering	TO:0000601 - UV-B light sensitivity, TO:0000707 - pericarp color, TO:0000290 - flavonoid content, TO:0000064 - embryo related trait, TO:0000051 - stem strength, TO:0000430 - germination rate, TO:0000137 - days to heading, TO:0006007 - polysaccharide content, TO:0006006 - monosaccharide content, TO:0000675 - ferulic acid content, TO:0000432 - temperature response trait, TO:0000397 - grain size, TO:0000326 - leaf color, TO:0002616 - flowering time, TO:0000396 - grain yield, TO:0000168 - abiotic stress trait, TO:0000159 - blue light sensitivity, TO:0000075 - light sensitivity, TO:0000590 - grain weight, TO:0000229 - photoperiod sensitivity	
8919	APO	apo	APOMIXIS	apomixis			12					GR:0061076	0				
8920	ATG4	Atg4, OsAtg4, APG4, Atg4b, OsATG4b	AUTOPHAGY ASSOCIATED GENE 4	autophagy 4, AUTOPHAGY RELATED4b, autophagy 4b, AUTOPHAGY ASSOCIATED GENE 4B			4	Q7XPW8, Q2XPP4, DQ269984, ABB77259. PO:0020104; leaf sheath ; PO:0009049; inflorescence ; PO:0009005; root ; PO:0009025; leaf. LOC_Os04g58560. Atg4b in Chung et al. 2009.	 Biochemical character	Os04g0682000	LOC_Os04g58560.1, LOC_Os04g58560.2	GR:0101172	0		GO:0016807 - cysteine-type carboxypeptidase activity, GO:0005515 - protein binding, GO:0005776 - autophagic vacuole, GO:0005775 - vacuolar lumen, GO:0005737 - cytoplasm, GO:0019786 - APG8-specific protease activity, GO:0006914 - autophagy		PO:0009025 - vascular leaf , PO:0009005 - root , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
8922	CCH	OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14	COPPER CHAPERONE HOMOLOG	Anti-oxidant 1, copper chaperone homolog CCH, Heavy metal-associated protein 14	COPPER CHAPERONE HOMOLOG		2	AF198626. down-regulated after fertilization (Abiko et al. 2013).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility,  Biochemical character	Os02g0530100	LOC_Os02g32814.1	GR:0101323	0		GO:0046688 - response to copper ion, GO:0010288 - response to lead ion, GO:0009566 - fertilization, GO:0010043 - response to zinc ion, GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0006826 - iron ion transport, GO:0005507 - copper ion binding, GO:0030001 - metal ion transport	TO:0000021 - copper sensitivity, TO:0000351 - zinc sensitivity	
8923	EP3	EP3/LP, LP, OsLP, OsFbox076, OsFbox76, Os_F0106, OsEP3, OsFBK5, FBK5	ERECT PANICLE 3	LARGER PANICLE, F-box protein 76, F-box-type E3 ubiquitin ligase K5	ep3, lp		2	TO:0000847: panicle anatomy and morphology trait. a Kelch repeat-containing F box protein. Os_F0106 in Hua et al. 2011. EP3 is a functional orthologue of Arabidopsis HWS gene (Yu et al. 2015). TO:0000862: floral organ morphology trait. . PO:0025610: stem hypodermis. TO:0000975: grain width. TO:0002741: grain surface area. TO:1000022: anther morphology trait. TO:0011008:  stigma length.	 Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Reproductive organ - Panicle, Mode of branching	Os02g0260200	LOC_Os02g15950.1		0		GO:0010118 - stomatal movement, GO:0005634 - nucleus, GO:0010052 - guard cell differentiation, GO:0005737 - cytoplasm, GO:0048437 - floral organ development, GO:0048316 - seed development, GO:0048513 - organ development, GO:0010229 - inflorescence development, GO:0009760 - C4 photosynthesis, GO:0009908 - flower development	TO:0000225 - stamen number, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000050 - inflorescence branching, TO:0006022 - floral organ development trait, TO:0006013 - carpel number, TO:0000370 - leaf width, TO:0000622 - flower development trait, TO:0000135 - leaf length, TO:0000207 - plant height, TO:0000391 - seed size, TO:0000269 - 100-seed weight, TO:0000371 - yield trait, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0006038 - floral organ number, TO:0000421 - pollen fertility, TO:0002768 - spikelet length, TO:0002600 - flower organ size, TO:0000564 - spikelet width, TO:0006029 - glume number, TO:0000447 - filled grain number, TO:0000653 - seed development trait, TO:0002759 - grain number, TO:0000621 - inflorescence development trait, TO:0000040 - panicle length, TO:0000625 - spikelet density, TO:0000531 - anther length, TO:0000357 - growth and development trait	PO:0009047 - stem , PO:0007615 - flower development stage , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0025585 - floral organ formation stage , PO:0009005 - root , PO:0025034 - leaf , PO:0009010 - seed , PO:0009046 - flower , PO:0020127 - primary root , PO:0009013 - portion of meristem tissue , PO:0020123 - root cap , PO:0006036 - root epidermis , PO:0025178 - stem epidermis , PO:0006023 - bundle sheath , PO:0004010 - meristematic cell , PO:0009066 - anther , PO:0025281 - pollen , PO:0009072 - plant ovary 
8924	EP2(t)	Ep2(t)	ERECT PANICLE 2				4	The target trais was mapped between RM5879 and RM3332.	 Reproductive organ - Panicle, Mode of branching				0				
8925	ETR2	etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3	ETHYLENE RESPONSE 2	subfamily I ethylene receptor, ethylene receptor 2	PROTEIN KINASE	Osetr2	4	No ETR1-like receptor (subfamily I receptor with a receiver domain) was identified after analysis of the whole rice genome.  AB107219, AF420319, Q944U0, AY136816. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Seed - Physiological traits - Storage substances	Os04g0169100	LOC_Os04g08740.3, LOC_Os04g08740.2, LOC_Os04g08740.1		0		GO:0009873 - ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0048573 - photoperiodism, flowering, GO:0005789 - endoplasmic reticulum membrane, GO:0018106 - peptidyl-histidine phosphorylation, GO:0009733 - response to auxin stimulus, GO:0009413 - response to flooding, GO:0000155 - two-component sensor activity, GO:0000156 - two-component response regulator activity, GO:0005524 - ATP binding, GO:0010105 - negative regulation of ethylene mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000163 - auxin sensitivity, TO:0002616 - flowering time, TO:0000255 - sheath blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000137 - days to heading, TO:0000382 - 1000-seed weight, TO:0000696 - starch content, TO:0000173 - ethylene sensitivity, TO:0000286 - submergence sensitivity	
8926	BC7	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17	BRITTLE CULM 7	Cellulose synthase A catalytic subunit 4 [UDP-forming], Cellulose synthase A catalytic subunit 4, brittle culm 7, brittle culm11, fragile culm 17	CELLULOSE SYNTHASE A4	bc7, bc11, oscesa, cesa4, fc17	1	EC=2.4.1.12 A2WV32(indica). Q5JN63(japonca). a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association. GO:1901698: response to nitrogen compound. TO:0000993: cellulose content.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os01g0750300	LOC_Os01g54620.1		0		GO:0016021 - integral to membrane, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0009642 - response to light intensity, GO:0009531 - secondary cell wall, GO:0009834 - secondary cell wall biogenesis, GO:0030244 - cellulose biosynthetic process, GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0005515 - protein binding, GO:0009723 - response to ethylene stimulus, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0016020 - membrane, GO:0008270 - zinc ion binding, GO:0007047 - cell wall organization, GO:0009610 - response to symbiotic fungus, GO:0005886 - plasma membrane	TO:0000460 - light intensity sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000051 - stem strength, TO:0000173 - ethylene sensitivity	PO:0009047 - stem , PO:0025025 - root system , PO:0000025 - root tip 
8927	BRXL1	OsBRXL1	BREVIS RADIX-LIKE 1	Brevis radix-like 1, BRX-like 1	BREVIS RADIX-LIKE 1		8	Q6YUB8. Although different locus number(OsBRXL4) is used in the reference 2010, the original number is given the highest priority in the database.	 Tolerance and resistance - Stress tolerance	Os08g0462700	LOC_Os08g36020.1		0		GO:0005634 - nucleus		
8928	BRXL2	OsBRXL2	BREVIS RADIX-LIKE 2	Brevis radix-like 2, BRX-like 2	BREVIS RADIX-LIKE 2		2	Q6ZIK7. Although different locus number(OsBRXL1) is used in the reference 2010, the original number is given the highest priority in the database.	 Tolerance and resistance - Stress tolerance	Os02g0700700	LOC_Os02g47230.1, LOC_Os02g47230.2		0		GO:0005634 - nucleus		
8929	BRXL3	OsBRXL3	BREVIS RADIX-LIKE 3	Brevis radix-like 3, BRX-like 3	BREVIS RADIX-LIKE 3		4	Q7XPT0.	 Tolerance and resistance - Stress tolerance	Os04g0600500	LOC_Os04g51172.1		0		GO:0005634 - nucleus		
8930	BRXL4	OsBRXL4	BREVIS RADIX-LIKE 4	Brevis radix-like 4, BRX-like 4	BREVIS RADIX-LIKE 4		3	Q84T65. Although different locus number(OsBRXL2) is used in the reference 2010, the original number is given the highest priority in the database.	 Tolerance and resistance - Stress tolerance	Os03g0853500	LOC_Os03g63650.1		0		GO:0005634 - nucleus		
8931	BRXL5.P	OsBRXL5.P, OsBRXL5	BREVIS RADIX-LIKE 5 PSEUDOGENE	Brevis radix-like 5 pseudogene, BRX-like 5 pseudogene			12	Q2QWK1. Although different locus number(OsBRXL6) is used in the reference 2010, the original number is given the highest priority in the database. LOC_Os12g09080.	 Tolerance and resistance - Stress tolerance	Os12g0193000	LOC_Os12g09080.1		0		GO:0005634 - nucleus		
8932	BRXL5	OsBRXL5	BREVIS RADIX-LIKE 5	Brevis radix-like 5	BREVIS RADIX-LIKE 5		9	OsBRXL5 should be the combination of the two predicted molecules (LOC_Os09g27220 + LOC_Os09g27220).	 Tolerance and resistance - Stress tolerance	Os09g0444500	LOC_Os09g27220.1		0		GO:0005634 - nucleus		
8933	LRA1	OsPIN2, PIN2, OsLRA1, WAR1, OsWAR1	LARGE ROOT ANGLE1	PIN-FORMED 2, large root angle 1, AUXIN EFFLUX CARRIER COMPONENT 2-LIKE, wavy root 1	PIN PROTEIN 2	lra1, war1, war1-cr#1, war1-cr#2, war1-cr#3, war1-1, war1-2	6	BR000831, AP005769, Q651V6. gi:52077371. auxin efflux carrier. target of Osa-miR156. GO:1901698: response to nitrogen compound. GO:2000012: regulation of auxin polar transport.GO:200028: regulation of root development. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0660200	LOC_Os06g44970.1		0		GO:0009629 - response to gravity, GO:0005886 - plasma membrane, GO:0009415 - response to water, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0009725 - response to hormone stimulus, GO:0009733 - response to auxin stimulus, GO:0009958 - positive gravitropism, GO:0009660 - amyloplast organization, GO:0016020 - membrane, GO:0048364 - root development, GO:0010029 - regulation of seed germination, GO:0009590 - detection of gravity, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0001666 - response to hypoxia, GO:0006979 - response to oxidative stress, GO:0009737 - response to abscisic acid stimulus, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009734 - auxin mediated signaling pathway, GO:0009926 - auxin polar transport	TO:0000615 - abscisic acid sensitivity, TO:0002672 - auxin content, TO:0000043 - root anatomy and morphology trait, TO:0000567 - tiller angle, TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000516 - relative root length, TO:0002657 - oxidative stress, TO:0000237 - water stress trait, TO:0000346 - tiller number, TO:0000605 - hydrogen peroxide content, TO:0000015 - oxygen sensitivity, TO:0000136 - relative water content, TO:0002662 - leaf rolling tolerance, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content, TO:0000656 - root development trait, TO:0000152 - panicle number, TO:0000401 - plant growth hormone sensitivity, TO:0002693 - gravity response trait	PO:0000025 - root tip , PO:0008039 - stem base , PO:0004013 - epidermal cell , PO:0000016 - lateral root primordium , PO:0025256 - lateral root elongation zone , PO:0009005 - root , PO:0007520 - root development stage 
8934	PIN10A	PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3	PIN PROTEIN 10A	PIN PROTEIN 3A	PIN PROTEIN 10A		1	BR000832, AP003725, Q5VP70, auxin efflux carrier. gi:55297110. OsPIN3a in Zou et al. 2014 and Akiba et al. 2014, Maliket al. 2020. OsPIN3 in Deshpande et al. 2015, Lv et al. 2023. TO:0001041: root yield.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0643300	LOC_Os01g45550.3, LOC_Os01g45550.2, LOC_Os01g45550.1		0		GO:0009734 - auxin mediated signaling pathway, GO:0009409 - response to cold, GO:0048830 - adventitious root development, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0042594 - response to starvation, GO:0055085 - transmembrane transport, GO:0046685 - response to arsenic	TO:0000031 - silicon sensitivity, TO:0000303 - cold tolerance, TO:0000578 - root fresh weight, TO:0000615 - abscisic acid sensitivity, TO:0001006 - adventitious root number, TO:0000084 - root number	PO:0004013 - epidermal cell 
8935	PIN10B	PIN3B, OsPIN3b, OsPIN10b	PIN PROTEIN 10B	PIN PROTEIN 3B	PIN PROTEIN 10B		5	BR000833, AC098571, Q6L5F6, auxin efflux carrier. OsPIN3b in Zou et al. 2014, Maliket al. 2020.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0576900	LOC_Os05g50140.2, LOC_Os05g50140.1		0		GO:0009409 - response to cold, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009734 - auxin mediated signaling pathway	TO:0000303 - cold tolerance	
8936	PIN5A	OsPIN5a, OsPIN6	PIN PROTEIN 5A		PIN PROTEIN 5A		1	BR000834, AP003437, Q651V6. OsPIN6 in Zhang et al. 2019. TO:0001041: root yield.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0919800	LOC_Os01g69070.1		0		GO:0055085 - transmembrane transport, GO:0009409 - response to cold, GO:0009734 - auxin mediated signaling pathway, GO:0016021 - integral to membrane, GO:0046685 - response to arsenic, GO:0051607 - defense response to virus, GO:0048830 - adventitious root development	TO:0000303 - cold tolerance, TO:0000031 - silicon sensitivity, TO:0001006 - adventitious root number, TO:0000578 - root fresh weight, TO:0000084 - root number, TO:0000020 - black streak dwarf virus resistance	
8937	GRP1	OsGRP1	GLYCINE-RICH RNA-BINDING PROTEIN 1	glycine-rich RNA-binding protein 1	GLYCINE-RICH RNA-BINDING PROTEIN 1		1		 Tolerance and resistance - Stress tolerance	Os01g0916600	LOC_Os01g68790.1, LOC_Os01g68790.2, LOC_Os01g68790.3, LOC_Os01g68790.4		0		GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
8938	GRP2	OsGRP2	GLYCINE-RICH RNA-BINDING PROTEIN 2	glycine-rich RNA-binding protein 2	GLYCINE-RICH RNA-BINDING PROTEIN 2		3		 Tolerance and resistance - Stress tolerance	Os03g0770100	LOC_Os03g56020.1		0		GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
8939	GRP3	OsGRP3, RTP, RBP-152	GLYCINE-RICH RNA-BINDING PROTEIN 3	glycine-rich RNA-binding protein 3, ABA-inducible for glycine-rich protein, Retrotransposon protein, RNA-binding RBP-152, GLYCINE-RICH PROTEIN 3	GLYCINE-RICH RNA-BINDING PROTEIN 3	grp3-1, grp3-2	3	D10424 (partial cds). D15344, D16070, D22624. D29707. BF889450. embryonic abundant protein, glycine-rich. Gene Expression Omnibus (GEO) under accession number GSE222671. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0670700	LOC_Os03g46770.1		0		GO:0042743 - hydrogen peroxide metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0043488 - regulation of mRNA stability, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005829 - cytosol, GO:0050832 - defense response to fungus	TO:0000605 - hydrogen peroxide content, TO:0000516 - relative root length, TO:0001034 - relative plant height, TO:0000633 - relative total dry weight, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
8940	GRP4	OsGRP4	GLYCINE-RICH RNA-BINDING PROTEIN 4	glycine-rich RNA-binding protein 4	GLYCINE-RICH RNA-BINDING PROTEIN 4		4		 Tolerance and resistance - Stress tolerance	Os04g0414400	LOC_Os04g33810.1		0		GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
8941	GRP5	OsGRP5	GLYCINE-RICH RNA-BINDING PROTEIN 5	glycine-rich RNA-binding protein 5	GLYCINE-RICH RNA-BINDING PROTEIN 5		5		 Tolerance and resistance - Stress tolerance	Os05g0223300	LOC_Os05g13630.1		0		GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
8942	GRP6	OsGRP6, GRRBP7	GLYCINE-RICH RNA-BINDING PROTEIN 6	glycine-rich RNA-binding protein 6, glycine-rich RNA-binding protein 7	GLYCINE-RICH RNA-BINDING PROTEIN 6		12	D22825.	 Tolerance and resistance - Stress tolerance	Os12g0502200	LOC_Os12g31800.1		0		GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
8943	FLO24	ClpB-c, OsClpB-c, OsFLO24, HSP101, OsHSP101	FLOURY ENDOSPERM 24	class I Clp ATPase B-C, ClpB-chloroplastic, ClpB/Hsp100 chloroplastic isoform, FLOURY ENDOSPERM24, heat shock protein 101	CLASS I CLP ATPASE B-C		3		 Tolerance and resistance - Stress tolerance	Os03g0426900	LOC_Os03g31300.1		0		GO:0006950 - response to stress, GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding, GO:0019538 - protein metabolic process, GO:0005515 - protein binding		
8945	CLPB-M	ClpB-m, OsClpB-m	CLASS I CLP ATPASE B-M	class I Clp ATPase B-M, ClpB-mitochondrial, ClpB/Hsp100 mitochondrial isoform	CLASS I CLP ATPASE B-M		2	OsSUF4 target gene (Liu et al. 2019).	 Biochemical character	Os02g0181900	LOC_Os02g08490.1		0		GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding		
8946	CLPC1	ClpC1	CLASS I CLP ATPASE C1	class I Clp ATPase C1	CLASS I CLP ATPASE C1		4		 Biochemical character	Os04g0397100	LOC_Os04g32560.1, LOC_Os04g32560.2		0		GO:0017111 - nucleoside-triphosphatase activity, GO:0006289 - nucleotide-excision repair, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0004518 - nuclease activity		
8947	CLPC2	ClpC2	CLASS I CLP ATPASE C2	class I Clp ATPase C2	CLASS I CLP ATPASE C2		12		 Biochemical character	Os12g0226900	LOC_Os12g12580.1, LOC_Os12g12580.2		0		GO:0055114 - oxidation reduction, GO:0008270 - zinc ion binding, GO:0016491 - oxidoreductase activity		
8948	CLPC3	ClpC3, OsCLPC3	CLASS I CLP ATPASE C3	class I Clp ATPase C3	CLASS I CLP ATPASE C3		11		 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character,  Reproductive organ - panicle	Os11g0267400	LOC_Os11g16590.1		0		GO:0004518 - nuclease activity, GO:0017111 - nucleoside-triphosphatase activity, GO:0008233 - peptidase activity, GO:0005515 - protein binding, GO:0006289 - nucleotide-excision repair, GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0019538 - protein metabolic process	TO:0000207 - plant height, TO:0000371 - yield trait, TO:0000421 - pollen fertility, TO:0000152 - panicle number, TO:0000455 - seed set percent, TO:0000040 - panicle length	
8949	CLPC4	ClpC4	CLASS I CLP ATPASE C4	class I Clp ATPase C4	CLASS I CLP ATPASE C4		11		 Biochemical character	Os11g0269000	LOC_Os11g16770.1		0				
8950	ERD1	CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4	EARLY RESPONSIVE TO DEHYDRATION 1	class I Clp ATPase D1, early responsive to drought 1	CLASS I CLP ATPASE D1		2	Q6H795. Caseinolytic protease regulatory subunit. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0526400	LOC_Os02g32520.2, LOC_Os02g32520.1		0		GO:0017111 - nucleoside-triphosphatase activity, GO:0006562 - proline catabolic process, GO:0005983 - starch catabolic process, GO:0009751 - response to salicylic acid stimulus, GO:0006970 - response to osmotic stress, GO:0005515 - protein binding, GO:0005524 - ATP binding, GO:0008233 - peptidase activity, GO:0034605 - cellular response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0019538 - protein metabolic process	TO:0006002 - proline content, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000696 - starch content	
8951	CLPD2	ClpD2, OsClpD2	CLASS I CLP ATPASE D2	class I Clp ATPase D2	CLASS I CLP ATPASE D2		4	LOC_Os04g33210.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0405000	LOC_Os04g33210.1		0		GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress	
8952	NAC122	OsNAC10, NAC10, ONAC122, NAC122, OsSNAC10, SNAC10	NAC DOMAIN-CONTAINING PROTEIN 122	NAC domain-containing protein 10, NAC domain-containing protein 122	NAC DOMAIN-CONTAINING PROTEIN 122		11	JA-responsive SNAC (stress-responsive NAC) factor. OsNAC10 in Jeong et al. 2010, Wang et al. 2017, Yang et al. 2019, Yang et al. 2020, Li et al. 2023. OsSNAC10 in Zhao et al. 2021, Wang et al. 2021.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root	Os11g0126900	LOC_Os11g03300.2, LOC_Os11g03300.1		0		GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009635 - response to herbicide, GO:0009751 - response to salicylic acid stimulus, GO:0051607 - defense response to virus	TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance, TO:0000058 - herbicide sensitivity, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000020 - black streak dwarf virus resistance, TO:0000172 - jasmonic acid sensitivity	
8953	APX3	OsAPx3, OsAPx03, OSAPX3, APx3, mAPX	ASCORBATE PEROXIDASE 3	ascorbate peroxidase 3, Peroxisomal Ascorbate Peroxidase, microbody-bound ascorbate peroxidase	ASCORBATE PEROXIDASE 3		4	AY382617. AAQ88105. Q01MI9. Q0JEQ2. BGIOSGA015546.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0223300	LOC_Os04g14680.1		0		GO:0016021 - integral to membrane, GO:0042744 - hydrogen peroxide catabolic process, GO:0005777 - peroxisome, GO:0020037 - heme binding, GO:0016688 - L-ascorbate peroxidase activity, GO:0034059 - response to anoxia, GO:0055114 - oxidation reduction	TO:0000015 - oxygen sensitivity	
8954	APX4	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4	ASCORBATE PEROXIDASE 4	ascorbate peroxidase 4, Peroxisomal APX 4	ASCORBATE PEROXIDASE 4		8	Q6ZJJ1. C29046. Peroxisomal Ascorbate Peroxidase.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0549100	LOC_Os08g43560.3, LOC_Os08g43560.2, LOC_Os08g43560.1		0		GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0005777 - peroxisome, GO:0042744 - hydrogen peroxide catabolic process, GO:0055114 - oxidation reduction, GO:0006979 - response to oxidative stress, GO:0016688 - L-ascorbate peroxidase activity, GO:0034059 - response to anoxia	TO:0000316 - photosynthetic ability, TO:0000015 - oxygen sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000319 - rubisco content, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress	
8955	APX5	OsAPx5, OsAPx05, OSAPX5, APx5	ASCORBATE PEROXIDASE 5	ascorbate peroxidase 5	ASCORBATE PEROXIDASE 5		12	P0C0L0. AU030079. ABA96618. Stromal Ascorbate Peroxidase. chloroplastic isoform.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0178200	LOC_Os12g07830.1		0		GO:0005739 - mitochondrion, GO:0009536 - plastid, GO:0042744 - hydrogen peroxide catabolic process, GO:0009570 - chloroplast stroma, GO:0020037 - heme binding, GO:0034059 - response to anoxia, GO:0055114 - oxidation reduction, GO:0016688 - L-ascorbate peroxidase activity	TO:0000015 - oxygen sensitivity	
8956	APX6	OsAPx6, OsAPx06, OSAPX6, APx6	ASCORBATE PEROXIDASE 6	ascorbate peroxidase 6	ASCORBATE PEROXIDASE 6		12	LOC_Os12g07820. P0C0L1. AU173022. ABA96617. Stromal Ascorbate Peroxidase. chloroplastic isoform.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0178100	LOC_Os12g07820.1		0		GO:0042742 - defense response to bacterium, GO:0016688 - L-ascorbate peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process, GO:0009570 - chloroplast stroma, GO:0020037 - heme binding, GO:0055114 - oxidation reduction	TO:0000175 - bacterial blight disease resistance	
8957	APX7	OsAPx7, OsAPx07, OSAPX7, APx7, sAPX	ASCORBATE PEROXIDASE 7	ascorbate peroxidase 7, stromal Ascorbate Peroxidase	ASCORBATE PEROXIDASE 7		4	AB1148551. AI978435. BAC79362. Q7XJ02. D23646. Cytochrome c peroxidase in Sasaki et al. 1994. chloroplastic isoform. TO:0020095: stomatal process related trait.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0434800	LOC_Os04g35520.4, LOC_Os04g35520.3, LOC_Os04g35520.2, LOC_Os04g35520.1		0		GO:0009536 - plastid, GO:0009579 - thylakoid, GO:0006801 - superoxide metabolic process, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0042742 - defense response to bacterium, GO:0009570 - chloroplast stroma, GO:0010118 - stomatal movement, GO:0055114 - oxidation reduction, GO:0042744 - hydrogen peroxide catabolic process, GO:0030104 - water homeostasis, GO:0016688 - L-ascorbate peroxidase activity, GO:0020037 - heme binding	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000015 - oxygen sensitivity, TO:0000136 - relative water content, TO:0000504 - leaf temperature, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0001017 - water use efficiency	
8958	APX8	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8	ASCORBATE PEROXIDASE 8	ascorbate peroxidase 8	ASCORBATE PEROXIDASE 8		2	BAC79363. Q69SV0. AB114856. Thylakoid-bound Ascorbate Peroxidase.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0553200	LOC_Os02g34810.1		0		GO:0009409 - response to cold, GO:0031969 - chloroplast membrane, GO:0016688 - L-ascorbate peroxidase activity, GO:0016021 - integral to membrane, GO:0042744 - hydrogen peroxide catabolic process, GO:0070482 - response to oxygen levels, GO:0020037 - heme binding, GO:0055114 - oxidation reduction, GO:0009536 - plastid, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000015 - oxygen sensitivity	
8959	WRKY89	OsWRKY89	WRKY GENE 89		TRANSCRIPTION FACTOR WRKY 89		8	DQ298186. WRKY48 in Zhang and Wang (2005) and Berri et al. (2009). WRKY74 in Wu et al. (2005) in Sun et al. 2014. WRKY82 in Ryu et al. (2006) and Ross et al. (2007), Xu et al. 2018.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0276200	LOC_Os08g17400.1		0		GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity	TO:0000276 - drought tolerance	
8960	WRKY94	OsWRKY94	WRKY GENE 94		TRANSCRIPTION FACTOR WRKY		12	WRKY89 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY102 in Wu et al. (2005). WRKY83 in Ryu et al. (2006) and Ross et al. (2007).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0597700	LOC_Os12g40570.1, LOC_Os12g40570.2		0		GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf 
8961	WRKY85	OsWRKY85	WRKY GENE 85	WRKY transcription factor 85, Rice WRKY gene85	TRANSCRIPTION FACTOR WRKY 85		6	WRKY85 (P0702F05.11) in Qiu et al. 2004.		Os06g0157800,Os06g0158100			0				
8962	WRKY104	OsWRKY104, CRPG32, OsCRPG32	WRKY GENE 104	collar region-preferential gene 32	TRANSCRIPTION FACTOR WRKY104		11	AY781112 (Indica). WRKY9 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY89 in Wu et al. (2005), Wang et al. 2008, Wang et al. 2021, Ma et al. 2023. WRKY100 in Ross et al.(2007). WRKY93 (AC123514_59764~60804 bp) in Qiu et al. 2004, Rice WRKY Working Group 2012. WRKY93 and WRKY104 in Choi et al. 2017. OsWRKY46 in Islam et al. 2023. GO:2000028: regulation of photoperiodism, flowering. TO:0020076: phenolic compound content.	 Tolerance and resistance - Insect resistance,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0117400	LOC_Os11g02520.1		0		GO:0003700 - transcription factor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0048573 - photoperiodism, flowering, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010224 - response to UV-B, GO:0051607 - defense response to virus, GO:0006952 - defense response, GO:0002213 - defense response to insect	TO:0000731 - lignin content, TO:0000148 - viral disease resistance, TO:0000145 - internode length, TO:0002616 - flowering time, TO:0000175 - bacterial blight disease resistance, TO:0000601 - UV-B light sensitivity, TO:0000205 - white-backed planthopper resistance, TO:0000137 - days to heading, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease	PO:0006012 - leaf collar 
8963	PIN5C	PIN5B, OsPIN5b, OsPIN5c	PIN PROTEIN 5C	PIN PROTEIN 5B	PIN PROTEIN 5C		9	BR000835. OsPIN5b in Zou et al. 2014, Zhang et al. 2020.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0505400	LOC_Os09g32770.1		0		GO:0009415 - response to water, GO:0055085 - transmembrane transport, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000237 - water stress trait, TO:0000303 - cold tolerance	
8964	PIN5B	PIN5C, OsPIN5c, OsPIN5b, PIN4	PIN PROTEIN 5B	PIN PROTEIN 5C, PROBABLE AUXIN EFFLUX CARRIER COMPONENT 5C	PIN PROTEIN 5B	ospin5b, ospin5b-1, ospin5b-13	8	BR000836. OsPIN5c in Zou et al. 2014. PIN4 in Zhang et al. 2020. GO:0060918: auxin transport. TO:0001041: root yield.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Root,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os08g0529000	LOC_Os08g41720.1		0		GO:0009415 - response to water, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0010252 - auxin homeostasis, GO:0005783 - endoplasmic reticulum	TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0002672 - auxin content, TO:0000237 - water stress trait, TO:0000241 - leaf number, TO:0000371 - yield trait	
8965	PIN8	OsPIN8	PIN PROTEIN 8		PIN PROTEIN 8		1	BR000837.	 Biochemical character	Os01g0715600	LOC_Os01g51780.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
8966	PIN9	OsPIN9	PIN PROTEIN 9		PIN PROTEIN 9		1	BR000838. GO:1901698: response to nitrogen compound. GO:0060918: auxin transport. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Vegetative organ - Root,  Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0802700	LOC_Os01g58860.1		0		GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0010311 - lateral root formation, GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0009725 - response to hormone stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009959 - negative gravitropism, GO:0006979 - response to oxidative stress, GO:0043067 - regulation of programmed cell death, GO:0009734 - auxin mediated signaling pathway, GO:0009409 - response to cold	TO:0002693 - gravity response trait, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000011 - nitrogen sensitivity, TO:0001006 - adventitious root number, TO:0000401 - plant growth hormone sensitivity, TO:0000227 - root length, TO:0000605 - hydrogen peroxide content, TO:0002657 - oxidative stress, TO:0002672 - auxin content, TO:0000357 - growth and development trait, TO:0002662 - leaf rolling tolerance	PO:0007520 - root development stage 
8967	WRKY81	OsWRKY81, OsWRKY33	WRKY GENE 81		TRANSCRIPTION FACTOR WRKY		3	LOC_Os03g33012. AF193802. AY302436. WRKY84 in Ryu et al. (2006) and Ross et al. (2007). WRKY107 in Berri et al. (2009). OsWRKY33 in Koo et al. 2009. WRKY81 and WRKY120 in Choi et al. 2017.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os03g0444900	LOC_Os03g33012.1		0		GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0006952 - defense response, GO:0080027 - response to herbivore	TO:0000175 - bacterial blight disease resistance, TO:0000454 - stem borer resistance, TO:0000112 - disease resistance	
8968	FRO1	OsFRO1	FERRIC REDUCTASE 1		FERRIC REDUCTASE 1			AB126084	 Biochemical character				0				
8969	FRO2	OsFRO2, OsFRO1	FERRIC REDUCTASE 2	ferric reductase oxidase 2	FERRIC REDUCTASE 2		4	AB126085. ferric chelate reductase. OsFRO1 in Wang et al. 2013, Phosuwan et al. 2024. OsFRO1 and OsFRO2 in Cao  et al. 2021. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0578600	LOC_Os04g48930.1, LOC_Os04g48930.2, LOC_Os04g48930.4, LOC_Os04g48930.3		0		GO:0009609 - response to symbiotic bacterium, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0010039 - response to iron ion, GO:0016491 - oxidoreductase activity, GO:0050660 - FAD binding	TO:0006001 - salt tolerance, TO:0000224 - iron sensitivity	
8971	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d	CALMODULIN 61	Calmodulin-61, Calmodulin-like 1, calmodulin-like protein, CaM-like protein	CALMODULIN 61		1	U37936. Q8S1Y9, Q40642. LOC_Os01g59530.	 Biochemical character	Os01g0810300 	LOC_Os01g59530.1, LOC_Os01g59530.2	GR:0061338	0		GO:0016020 - membrane, GO:0005509 - calcium ion binding		
8972	NAC36	ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2	NAC DOMAIN-CONTAINING PROTEIN 36	IDE-binding factor 2, NAC domain-containing protein 36, NAC domain-containing protein 38, iron deficiency-responsive cis-acting element binding factor 2	NAC DOMAIN-CONTAINING PROTEIN 36		5	AB362160. LOC_Os05g35170. PO:0009005; root ; PO:0009025; leaf. Positive transcriptional regulator.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0426200	LOC_Os05g35170.1, LOC_Os05g35170.2, LOC_Os05g35170.3, LOC_Os05g35170.4, LOC_Os05g35170.5	GR:0080045	0		GO:0003677 - DNA binding, GO:0043565 - sequence-specific DNA binding, GO:0010106 - cellular response to iron ion starvation, GO:0045449 - regulation of transcription, GO:0003700 - transcription factor activity	TO:0000224 - iron sensitivity	PO:0009025 - vascular leaf , PO:0009005 - root 
8973	GLH10	glh10t, glh10(t), glh10	GREEN LEAFHOPPER RESISTANCE 10	Green leafhopper resistance10, Green leafhopper resistance 10, Green leafhopper resistance-10, Green leafhopper resistance-10t				the recessive gene of IR36. PO:0009011; plant structure ; PO:0000003; whole plant.	 Tolerance and resistance - Insect resistance			GR:0060385	0		GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
8974	GLH11	Glh11t, Glh11(t), Glh11	GREEN LEAFHOPPER RESISTANCE 11	Green leafhopper resistance11, Green leafhopper resistance 11, Green leafhopper resistance-11, Green leafhopper resistance-11t				dominant gene. PO:0009011; plant structure ; PO:0000003; whole plant.  the dominant gene of IR20965-11-3-3.	 Tolerance and resistance - Insect resistance			GR:0060386	0		GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
8975	PITP	Pi-tp(t), Pitp(t), Pi-tp	PYRICULARIA ORYZAE RESISTANCE TP	Pyricularia oryzae resistance-tp, Magnaporthe grisea resistance-tp			1	PO:0009025; leaf.	 Tolerance and resistance - Insect resistance			GR:0061458	0	114.1	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
8976	PITQ6	Pi-tq6, Pitq6	PYRICULARIA ORYZAE RESISTANCE TQ6	Pyricularia oryzae resistance tq6, Magnaporthe grisea resistance tq6			12	Original line is Teqing (Indica). Map position (29.2-47.5 cM). PO:0009025; leaf.	 Tolerance and resistance - Disease resistance			GR:0060665	0		GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
8978	PILM2	Pi-lm2, Pilm2, Pi lm2, Pib2	PYRICULARIA ORYZAE RESISTANCE LM2	Pyricularia oryzae resistance lm2, Magnaporthe grisea resistance lm2			11	Original line is Lemont(Japonica). Map position (56.2-117.9 cM). Pi-lm2 might be the Pi-kh allele known to be in Dawn, an ancestor of Lemont (Tabien  et al. 2002). Pi-lm2 is synonymous to Pib2 (Koide et al. 2009).	 Tolerance and resistance - Disease resistance				0		GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	
8979	AOS3	OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2	ALLENE OXIDE SYNTHASE 3	allene oxide synthase3, Allene oxide synthase 3, HYDROPEROXIDE LYASE 2	ALLENE OXIDE SYNTHASE 3		2	EC=4.2.1.92 Q6Z6L1. BGIOSGA007799 (indica).	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0218700	LOC_Os02g12680.1		0		GO:0020037 - heme binding, GO:0031408 - oxylipin biosynthetic process, GO:0005506 - iron ion binding, GO:0009266 - response to temperature stimulus, GO:0009695 - jasmonic acid biosynthetic process, GO:0009941 - chloroplast envelope, GO:0009753 - response to jasmonic acid stimulus, GO:0009620 - response to fungus, GO:0009978 - allene oxide synthase activity, GO:0010287 - plastoglobule, GO:0047987 - hydroperoxide dehydratase activity, GO:0005739 - mitochondrion, GO:0009535 - chloroplast thylakoid membrane, GO:0009611 - response to wounding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009624 - response to nematode, GO:0002215 - defense response to nematode, GO:0050832 - defense response to fungus, GO:0016829 - lyase activity, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity	TO:0000432 - temperature response trait, TO:0000384 - nematode damage resistance, TO:0000074 - blast disease	
8980	CAX1B	OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10	Ca(2+)/H(+) EXCHANGER 1B	Vacuolar cation/proton exchanger 1b, Ca(2+)/H(+) exchanger 1b, cation/H+ exchanger 1b, Na+/Ca2+ Exchanger 10, Sodium/calcium exchanger 10, cation exchanger 1b	Ca(2+)/H(+) EXCHANGER 1B		5	AB112770. Q5TKG3. CAX3 in Singh et al. 2013. Oryza barthii: ObarCAX1b: OBART05G28070/OBART05G28050, Oryza brachyantha: ObraCAX1b: OB05G35550, Oryza glaberrima: OglaCAX1b: ORGLA05G0244200, Oryza glumipatula: OgluCAX1b: OGLUM05G29480, Oryza longistaminata: OlCAX1b: OLONG_007971, Oryza meridionalis: OmCAX1b: OMERI05G23910, Oryza nivara: OnCAX1b: ONIVA05G29950, Oryza punctata: OpCAX1b: OPUNC05G25670, Oryza rufipogon: OrCAX1b: ORUFI05G30040. TO:0000975: grain width.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0594200	LOC_Os05g51610.1		0		GO:0048573 - photoperiodism, flowering, GO:0008324 - cation transmembrane transporter activity, GO:0006816 - calcium ion transport, GO:0015297 - antiporter activity, GO:0005773 - vacuole, GO:0055085 - transmembrane transport, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0010044 - response to aluminum ion, GO:0005509 - calcium ion binding, GO:0030912 - response to deep water, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0051592 - response to calcium ion, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000524 - submergence tolerance, TO:0000160 - UV light sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000011 - nitrogen sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000354 - aluminum sensitivity	PO:0009005 - root , PO:0007131 - seedling development stage , PO:0000025 - root tip , PO:0025034 - leaf 
8981	CAX1C	OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5	Ca(2+)/H(+) EXCHANGER 1C	Vacuolar cation/proton exchanger 1c, Ca(2+)/H(+) exchanger 1c, cation/H+ exchanger 1c, Na+/Ca2+ Exchanger 5, Sodium/calcium exchanger 5, cation exchanger 1c	Ca(2+)/H(+) EXCHANGER 1C		2	AB112771. Q5KTQ9.  CAX4 in Singh et al. 2013. Oryza barthii: ObarCAX1c: OBART02G14010, Oryza brachyantha: ObraCAX1c: OB02G22370, Oryza glaberrima: OglaCAX1c: ORGLA02G0123900, Oryza glumipatula: OgluCAX1c: OGLUM02G13900, Oryza longistaminata: OlCAX1c: OLONG_010143, Oryza meridionalis: OmCAX1c: OMERI02G14510, Oryza nivara: OnCAX1c: ONIVA02G15170, Oryza punctata: OpCAX1c: OPUNC02G12430 (only partial length sequence available), Oryza rufipogon: OrCAX1c: ORUFI02G14210. TO:0006059: cadmium content trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0314300	LOC_Os02g21009.1, LOC_Os02g21009.2		0		GO:0055073 - cadmium ion homeostasis, GO:0008324 - cation transmembrane transporter activity, GO:0005774 - vacuolar membrane, GO:0016020 - membrane, GO:0006816 - calcium ion transport, GO:0015691 - cadmium ion transport, GO:0005509 - calcium ion binding, GO:0005773 - vacuole, GO:0009411 - response to UV, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0003912 - DNA nucleotidylexotransferase activity, GO:0010044 - response to aluminum ion, GO:0009737 - response to abscisic acid stimulus, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0015297 - antiporter activity	TO:0006001 - salt tolerance, TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000354 - aluminum sensitivity, TO:0000524 - submergence tolerance, TO:0000011 - nitrogen sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000160 - UV light sensitivity	PO:0009005 - root , PO:0025034 - leaf 
8982	CAX2	OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2	Ca(2+)/H(+) EXCHANGER 2	Vacuolar cation/proton exchanger 2, Ca(2+)/H(+) exchanger 2, cation/H+ exchanger 2, Na+/Ca2+ Exchanger 7, Sodium/calcium exchanger 7, OSCA channels 1.2, reduced hyperosmolality-induced Ca2+ increase 1.2, cation exchanger 2	Ca(2+)/H(+) EXCHANGER 2		3	AB112772. Q5KQN0. CAX5 in Singh et al. 2013. Oryza barthii: ObarCAX2: OBART03G20450, Oryza brachyantha: ObraCAX2: OB03G29660, Oryza glaberrima: OglaCAX2: ORGLA03G0191100, Oryza glumipatula: OgluCAX2: OGLUM03G21200, Oryza longistaminata: OlCAX2: OLONG_009358, Oryza nivara: OnCAX2: ONIVA03G22170, Oryza punctata: OpCAX2: OPUNC03G19280, Oryza rufipogon: OrCAX2: ORUFI03G21080.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0397400	LOC_Os03g27960.2, LOC_Os03g27960.1		0		GO:0046686 - response to cadmium ion, GO:0006816 - calcium ion transport, GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0005783 - endoplasmic reticulum, GO:0015297 - antiporter activity, GO:0009411 - response to UV, GO:0055085 - transmembrane transport, GO:0051592 - response to calcium ion, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005773 - vacuole, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0010044 - response to aluminum ion, GO:0009739 - response to gibberellin stimulus	TO:0000102 - phosphorus sensitivity, TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000011 - nitrogen sensitivity, TO:0000354 - aluminum sensitivity, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000160 - UV light sensitivity	PO:0000003 - whole plant , PO:0009051 - spikelet , PO:0009005 - root , PO:0007033 - whole plant development stage 
8983	CAX3	OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9	Ca(2+)/H(+) EXCHANGER 3	Vacuolar cation/proton exchanger 3, Ca(2+)/H(+) exchanger 3, cation/H+ exchanger 3, Na+/Ca2+ Exchanger 9, Sodium/calcium exchanger 9, cation exchanger 3	Ca(2+)/H(+) EXCHANGER 3		4	AB112773. Q6K1C4. CAX6 in Singh et al. 2013. Oryza barthii: ObarCAX3: OBART04G27810, Oryza brachyantha: ObraCAX3: OB04G34750, Oryza glaberrima: OglaCAX3: ORGLA04G0240500, Oryza glumipatula: OgluCAX3: OGLUM04G27670, Oryza longistaminata: OlCAX3: OLONG_021212, Oryza meridionalis: OmCAX3: OMERI04G23200, Oryza nivara: OnCAX3: ONIVA04G26230, Oryza punctata: OpCAX3: OPUNC04G25220, Oryza rufipogon: OrCAX3: ORUFI04G29410.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0653200	LOC_Os04g55940.1, LOC_Os04g55940.2		0		GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation, GO:0015297 - antiporter activity, GO:0008324 - cation transmembrane transporter activity, GO:0006816 - calcium ion transport, GO:0016021 - integral to membrane, GO:0051592 - response to calcium ion, GO:0009753 - response to jasmonic acid stimulus, GO:0055085 - transmembrane transport, GO:0009411 - response to UV, GO:0030912 - response to deep water, GO:0009737 - response to abscisic acid stimulus, GO:0010044 - response to aluminum ion, GO:0005773 - vacuole, GO:0005509 - calcium ion binding, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance, TO:0000011 - nitrogen sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance, TO:0000102 - phosphorus sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000354 - aluminum sensitivity	PO:0020127 - primary root , PO:0025034 - leaf , PO:0007033 - whole plant development stage , PO:0000003 - whole plant , PO:0020121 - lateral root , PO:0009005 - root 
8984	CDKB2;1 	Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1, CDKB-2, OsCDKB-2	CYCLIN-DEPENDENT KINASE B2;1	B-type cyclin-dependent kinase 2;1	CYCLIN-DEPENDENT KINASE B2;1		8	Q0J4I1. D64036.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0512600	LOC_Os08g40170.1, LOC_Os08g40170.2		0		GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0051301 - cell division, GO:0006970 - response to osmotic stress, GO:0009524 - phragmoplast, GO:0046686 - response to cadmium ion, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007067 - mitosis, GO:0009737 - response to abscisic acid stimulus, GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005819 - spindle	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
8985	CYCA1;1	CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1	CYCLIN-A1-1	A-type cyclin 1;1, A-type cyclin 1-1	CYCLIN-A1-1		1	AB024986. Q7F830. CYCA2.3 in Xu et al. 2014, Shi et al. 2019.	 Biochemical character	Os01g0233500	LOC_Os01g13260.1		0		GO:0005634 - nucleus, GO:0051301 - cell division, GO:0007067 - mitosis		
8986	CYCH;1	Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1	CYCLIN-H-1 	cyclin H homolog 1, cyclin H1, H-type cyclin 1, cyclin H-1, CYCLIN H-1	CYCLIN-H-1		3	Q10D80. AY387483 (AAR07076.1). LOC_Os03g52750. CDK-activating kinase complex.	 Biochemical character	Os03g0737600	LOC_Os03g52750.1, LOC_Os03g52750.2		0		GO:0007049 - cell cycle, GO:0051301 - cell division		
8987	EEF1BG	eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1	ELONGATION FACTOR 1B GAMMA	gamma-subunit of translation elongation factor 1B, elongation factor 1B gamma, ELONGATION FACTOR 1 GAMMA 1	ELONGATION FACTOR 1B GAMMA		2	D89802. Q9ZRI7.	 Biochemical character	Os02g0220600	LOC_Os02g12800.1, LOC_Os02g12800.2, LOC_Os02g12800.3, LOC_Os02g12800.4, LOC_Os02g12800.5		0		GO:0006414 - translational elongation, GO:0003746 - translation elongation factor activity, GO:0005853 - eukaryotic translation elongation factor 1 complex		
8988	EF1G		ELONGATION FACTOR 1 GAMMA-LIKE PROTEIN	elongation factor 1-gamma	ELONGATION FACTOR 1 GAMMA-LIKE PROTEIN		2	Q6YW46. AY224455. D22238, C96682, AU102118, C96770.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0220500	LOC_Os02g12794.3		0		GO:0006414 - translational elongation, GO:0005853 - eukaryotic translation elongation factor 1 complex, GO:0003746 - translation elongation factor activity	TO:0000432 - temperature response trait	
8990	FEN1B	OsFEN-1b	FLAP ENDONUCLEASE 1B	Flap endonuclease-1b	FLAP ENDONUCLEASE 1B		3	Q75LI2. AB088391.	 Biochemical character	Os03g0834000			0		GO:0006281 - DNA repair, GO:0003677 - DNA binding, GO:0004519 - endonuclease activity, GO:0005634 - nucleus, GO:0000287 - magnesium ion binding		
8991	GAPC	OsGapC3, OGapC3, OsGAPDH1, GAPDH1, OsGapC1	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 	glyceraldehydes-3-phosphate dehydrogenase, cytosolic GAPDH3, cytosolic glyceraldehyde-3-phosphate dehydrogenase 3	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC	gapdh1	8	Q0J8A4, A2YQT7. U31676. BGIOSGA027913. GAPDH1 in Zhang et al. 2017. OsGapC1 in Wierbowski et al. 2020. OsGAPC3 in Zhang et al. 2011, Xu 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0126300	LOC_Os08g03290.1, LOC_Os08g03290.2, LOC_Os08g03290.3, LOC_Os08g03290.4		0		GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, GO:0055114 - oxidation reduction, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0051287 - NAD or NADH binding, GO:0006096 - glycolysis, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0009635 - response to herbicide, GO:0045454 - cell redox homeostasis, GO:0009628 - response to abiotic stimulus	TO:0000605 - hydrogen peroxide content, TO:0000430 - germination rate, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000058 - herbicide sensitivity	PO:0009046 - flower , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
8992	GER2	OsGLP8-3, GLP8-3, OsGER2, OsCDP8.3, CDP8.3	GERMIN-LIKE PROTEIN 2	Germin-like protein 8-3, germin-like protein 2, cupin domain protein 8.3	GERMIN-LIKE PROTEIN 2	glp8-3	8	Q6YZZ7. oxalate oxidase. D40492, AU174256. AF032972. GO:1990169: stress response to copper ion. 	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os08g0189200	LOC_Os08g08970.1		0		GO:0046688 - response to copper ion, GO:0045735 - nutrient reservoir activity, GO:0009607 - response to biotic stimulus, GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0002242 - defense response to parasitic plant	TO:0000021 - copper sensitivity, TO:0000444 - parasitic weed, TO:0000179 - biotic stress trait, TO:0000432 - temperature response trait	PO:0009010 - seed 
8993	GLP8-1	OsGLP8-1, OsCDP8.1, CDP8.1	GERMIN-LIKE PROTEIN 8-1	Germin-like protein 8-1, cupin domain protein 8.1	GERMIN-LIKE PROTEIN 8-1		8	Q6YZB2.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0188900	LOC_Os08g08920.1		0		GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity		
8994	GLN1;1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, OsGS1, GLN1-1, OsGS1-1, GS1-1, GS1.1, OsGS1.1	GLUTAMINE SYNTHETASE 1;1	cytosolic glutamine synthethase 1;1, cytosolic glutamine synthase 1, glutamine synthetase 1;1, Glutamine synthetase, glutamine synthetase 1, glutamine synthetase shoot isozyme, glutamate:ammonia ligase gamma, Gln synthetase 1-1	GLUTAMINE SYNTHETASE 1;1	Osgs1;1	2	X14245, AB037595, AB037664. P14656. C25787, AU102080. D15766. KC611121-KC611131 (O. sativa and wild rice species, partial cds). XB21 interacting protein (XB21IP). TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. GO:0006541: glutamine metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0735200	LOC_Os02g50240.1, LOC_Os02g50240.2		0		GO:0009635 - response to herbicide, GO:0005737 - cytoplasm, GO:0010167 - response to nitrate, GO:0060359 - response to ammonium ion, GO:0010431 - seed maturation, GO:0006099 - tricarboxylic acid cycle, GO:0005975 - carbohydrate metabolic process, GO:0009658 - chloroplast organization, GO:0009414 - response to water deprivation, GO:0006807 - nitrogen compound metabolic process, GO:0009610 - response to symbiotic fungus, GO:0004356 - glutamate-ammonia ligase activity, GO:0006542 - glutamine biosynthetic process, GO:0009620 - response to fungus, GO:0006970 - response to osmotic stress, GO:0010150 - leaf senescence, GO:0006995 - cellular response to nitrogen starvation, GO:0009651 - response to salt stress, GO:0042594 - response to starvation, GO:0010043 - response to zinc ion, GO:0007584 - response to nutrient, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0002673 - amino acid content, TO:0000333 - sugar content, TO:0002715 - chloroplast development trait, TO:0006002 - proline content, TO:0005007 - glufosinate sensitivity, TO:0006001 - salt tolerance, TO:0000011 - nitrogen sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000351 - zinc sensitivity, TO:0006032 - panicle size, TO:0000436 - spikelet sterility, TO:0002633 - fruit ripening trait, TO:0002661 - seed maturation, TO:0000249 - leaf senescence, TO:0000207 - plant height, TO:0000480 - nutrient sensitivity, TO:0000432 - temperature response trait, TO:0000360 - leaf elongation rate	PO:0000048 - leaf lamina vascular system , PO:0007632 - seed maturation stage , PO:0001054 - 4 leaf senescence stage , PO:0009005 - root 
8995	GLN1;2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2	GLUTAMINE SYNTHETASE 1;2	cytosolic glutamine synthethase 1;2, cytosolic glutamine synthase 2, glutamine synthetase 1;2, glutamine synthetase 1	GLUTAMINE SYNTHETASE 1;2	gs1;2, gs1-2, Osgs1;2	3	X14244, AB180688. P14654. TO:0020093: nitrogen content. GO: 0080144: amino acid homeostasis.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os03g0223400	LOC_Os03g12290.1		0		GO:0005524 - ATP binding, GO:0006542 - glutamine biosynthetic process, GO:0005737 - cytoplasm, GO:0060359 - response to ammonium ion, GO:0010150 - leaf senescence, GO:0006995 - cellular response to nitrogen starvation, GO:0006529 - asparagine biosynthetic process, GO:0050832 - defense response to fungus, GO:0004356 - glutamate-ammonia ligase activity, GO:0046688 - response to copper ion, GO:0042594 - response to starvation, GO:0010043 - response to zinc ion, GO:0019676 - ammonia assimilation cycle, GO:0009808 - lignin metabolic process, GO:0010223 - secondary shoot formation, GO:0009691 - cytokinin biosynthetic process, GO:0031667 - response to nutrient levels	TO:0000346 - tiller number, TO:0000371 - yield trait, TO:0000021 - copper sensitivity, TO:0000329 - tillering ability, TO:0002660 - cytokinin content, TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity, TO:0002673 - amino acid content, TO:0000333 - sugar content, TO:0000351 - zinc sensitivity, TO:0000249 - leaf senescence, TO:0000074 - blast disease, TO:0000152 - panicle number	PO:0006343 - axillary shoot system , PO:0001054 - 4 leaf senescence stage , PO:0004709 - axillary bud , PO:0009005 - root 
8996	GLUB4	GluB4, GluB-4, GluB-5, GluB5, GluB-4/5	GLUTELIN B4		GLUTELIN B4		2	X14393. AB093593. P14614. EU264106 (promoter sequence). AY427571 (promoter). GluB-5 in Qu et al. 2008. 	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os02g0268300	LOC_Os02g16830.1		0		GO:0009279 - cell outer membrane, GO:0006952 - defense response, GO:0045735 - nutrient reservoir activity	TO:0002661 - seed maturation	PO:0006220 - central endosperm , PO:0005360 - aleurone layer 
8997	GLUB5	GluB5, GLU2.3	GLUTELIN B5	gluten 2.3	GLUTELIN B5		2	AU094576. AB093593 (truncated form in Lgc1). Q6ERU3. GLU2.3 in Xu et al. 2016.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os02g0268100	LOC_Os02g16820.1		0		GO:0009651 - response to salt stress, GO:0000003 - reproduction, GO:0048316 - seed development, GO:0009791 - post-embryonic development, GO:0006952 - defense response, GO:0009279 - cell outer membrane, GO:0009415 - response to water, GO:0045735 - nutrient reservoir activity	TO:0000237 - water stress trait, TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0007022 - seed imbibition stage , PO:0001170 - seed development stage 
8998	HKT1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1, HKT1;1	HIGH-AFFINITY K+ TRANSPORTER 1	High-affinity K+ Transporter 1	HIGH-AFFINITY K+ TRANSPORTER 1	oshkt2;1, oshkt2;1-1, oshkt2;1-2, oshkt2;1-3	6	AB061311, AB061312, AF450299, AF313388, AJ491852, BAB61790. A2YGP9, Q0D9S3. sodium ion transporter. class II HKT transporter. OsHKT1;1 in Sun et al. 2014, Chakraborty et al. 2020. AY885801-AY885828 and DQ374748-DQ374774 (O. sativa and other wild rice species, partial cds). OsHKT2;1 in Fang et al. 2019, Hartley et al. 2019, Neang et al. 2020, Wei et al. 2021, Ye et al. 2021, Kim et al. 2021, Jing et al. 2022, Zhao et al. 2023, Wei et al. 2024. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0701700	LOC_Os06g48810.1		0		GO:0009414 - response to water deprivation, GO:0030955 - potassium ion binding, GO:0031402 - sodium ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0015079 - potassium ion transmembrane transporter activity, GO:0055075 - potassium ion homeostasis, GO:0051607 - defense response to virus, GO:0006813 - potassium ion transport, GO:0005886 - plasma membrane, GO:0055085 - transmembrane transport, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress, GO:0006814 - sodium ion transport, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0055078 - sodium ion homeostasis	TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000276 - drought tolerance, TO:0000608 - sodium content, TO:0000527 - sodium uptake	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root , PO:0009006 - shoot system 
8999	HKT2	OsHKT2, OsHKT2;2	HIGH-AFFINITY K+ TRANSPORTER 2	High-affinity K+ Transporter 2	HIGH-AFFINITY K+ TRANSPORTER 2			AB061313, BAB61791. Q93XI5. potassium-sodium symporter. OsHKT2;2 is absent from the japonica cultivar Nipponbare genome (Cotsaftis et al. 2011).	 Tolerance and resistance - Stress tolerance,  Biochemical character				0		GO:0031402 - sodium ion binding, GO:0006813 - potassium ion transport, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0009651 - response to salt stress, GO:0030955 - potassium ion binding, GO:0006814 - sodium ion transport	TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009006 - shoot system 
9001	HKT4	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4, OsHKT1;1-FL, OsHKT1;1-V1, OsHKT1;1-V2, OsHKT1;1-V3, OsHKT1;1-V4, OsHKT1;1-V5, OsHKT1;1-V6, OsHKT1;1-V7, OsHKT1;1-V8	HIGH-AFFINITY K+ TRANSPORTER 4	High-affinity K+ Transporter 4, Root Na+ Content 4	HIGH-AFFINITY K+ TRANSPORTER 4	oshkt1;1	4	AJ491815, AJ491816. Q7XPF8. OsHKT2 in Tripathy et al. 2015. OsHKT1.1 in Prodjinoto  et al. 2023, Wei et al. 2024. TO:1000041: root system sodium content. TO:0020004: shoot system sodium content.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0607500	LOC_Os04g51820.1, LOC_Os04g51820.3, LOC_Os04g51820.2		0		GO:0015079 - potassium ion transmembrane transporter activity, GO:0009414 - response to water deprivation, GO:0031402 - sodium ion binding, GO:0051607 - defense response to virus, GO:0006813 - potassium ion transport, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0006970 - response to osmotic stress, GO:0009741 - response to brassinosteroid stimulus, GO:0005886 - plasma membrane, GO:0030955 - potassium ion binding, GO:0055085 - transmembrane transport, GO:0008324 - cation transmembrane transporter activity, GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis, GO:0006814 - sodium ion transport	TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000276 - drought tolerance, TO:0000608 - sodium content, TO:0000095 - osmotic response sensitivity	PO:0009006 - shoot system , PO:0009066 - anther , PO:0020104 - leaf sheath , PO:0009037 - lemma , PO:0009038 - palea , PO:0009005 - root 
9002	HXK10	OsHXK10	HEXOKINASE-10	Hexokinase 10	HEXOKINASE-10		5	EC=2.7.1.1 AC108874, DQ116392. Q2KNB5.	 Biochemical character	Os05g0375100	LOC_Os05g31110.1		0		GO:0004396 - hexokinase activity, GO:0009527 - plastid outer membrane, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006096 - glycolysis, GO:0009555 - pollen development, GO:0009507 - chloroplast		PO:0001007 - pollen development stage 
9003	HXK2	OsHXK2	HEXOKINASE-2	Hexokinase 2	HEXOKINASE-2		5	EC=2.7.1.1 AC121365, DQ116384. Q2KNB9.	 Biochemical character	Os05g0532600	LOC_Os05g45590.1		0		GO:0006096 - glycolysis, GO:0004396 - hexokinase activity, GO:0005524 - ATP binding		
9004	HXK3	OsHXK3	HEXOKINASE-3	Hexokinase 3	HEXOKINASE-3		1	EC=2.7.1.1 Q2KNB4. AP003412, DQ116385.	 Biochemical character	Os01g0940100	LOC_Os01g71320.1		0		GO:0004396 - hexokinase activity, GO:0005524 - ATP binding, GO:0005741 - mitochondrial outer membrane, GO:0009555 - pollen development, GO:0006096 - glycolysis, GO:0016021 - integral to membrane		PO:0001007 - pollen development stage 
9005	HXK4	OsHXK4	HEXOKINASE-4	Hexokinase 4	HEXOKINASE-4		7	EC=2.7.1.1 Q94JW5. AP005257, DQ116386.	 Biochemical character	Os07g0197100	LOC_Os07g09890.1		0		GO:0009570 - chloroplast stroma, GO:0006096 - glycolysis, GO:0004396 - hexokinase activity, GO:0005524 - ATP binding		
9006	HXK5	OsHXK5	HEXOKINASE-5	Hexokinase 5	HEXOKINASE-5	OsHXK5-G113D, OsHXK5-S186A, hxk5-1, hxk5-2, hxk5-3, hxk5-4	5	EC=2.7.1.1 Q5W676. AC118284, DQ116387.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os05g0522500	LOC_Os05g44760.1		0		GO:0010581 - regulation of starch biosynthetic process, GO:0016021 - integral to membrane, GO:0004396 - hexokinase activity, GO:0010152 - pollen maturation, GO:0009555 - pollen development, GO:0006096 - glycolysis, GO:0009507 - chloroplast, GO:0010182 - sugar mediated signaling, GO:0045014 - negative regulation of transcription by glucose, GO:0009527 - plastid outer membrane, GO:0050832 - defense response to fungus, GO:0051594 - detection of glucose, GO:0009860 - pollen tube growth, GO:0009846 - pollen germination, GO:0005524 - ATP binding	TO:0000696 - starch content, TO:0002661 - seed maturation, TO:0000074 - blast disease, TO:0000421 - pollen fertility, TO:0000437 - male sterility	PO:0001007 - pollen development stage 
9007	HXK6	OsHXK6	HEXOKINASE-6	Hexokinase 6	HEXOKINASE-6	OsHXK6-G112D, OsHXK6-S185A	1	EC=2.7.1.1 Q8LQ68. AP003768, DQ116388.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os01g0742500	LOC_Os01g53930.2, LOC_Os01g53930.1		0		GO:0004396 - hexokinase activity, GO:0051594 - detection of glucose, GO:0009555 - pollen development, GO:0006397 - mRNA processing, GO:0005739 - mitochondrion, GO:0010182 - sugar mediated signaling, GO:0009507 - chloroplast, GO:0009527 - plastid outer membrane, GO:0045014 - negative regulation of transcription by glucose, GO:0016021 - integral to membrane, GO:0030528 - transcription regulator activity, GO:0005524 - ATP binding, GO:0006096 - glycolysis, GO:0045449 - regulation of transcription	TO:0000308 - male fertility restoration trait	
9008	HXK7	OsHXK7, OsHXK8	HEXOKINASE-7	Hexokinase 7, Hexokinase7, hexokinase 1	HEXOKINASE-7	oshxk7-1, oshxk7-2, OsHXK7-G76D, OsHXK7-S148A	5	EC=2.7.1.1 Q1WM16. AC093954, DQ116389. hexokinase 1 in Yamaguchi et al. 2004. C93441, AU166412. OsHXK8 in Tonosaki et al. 2021.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0187100	LOC_Os05g09500.1		0		GO:0009845 - seed germination, GO:0005975 - carbohydrate metabolic process, GO:0009408 - response to heat, GO:0004396 - hexokinase activity, GO:0005737 - cytoplasm, GO:0045014 - negative regulation of transcription by glucose, GO:0034059 - response to anoxia, GO:0006096 - glycolysis, GO:0005524 - ATP binding, GO:0010182 - sugar mediated signaling, GO:0009555 - pollen development	TO:0000432 - temperature response trait	PO:0001007 - pollen development stage , PO:0007057 - 0 seed germination stage 
9009	HXK8	OsHXK8	HEXOKINASE-8	Hexokinase 8	HEXOKINASE-8		1	EC=2.7.1.1 Q1WM15. AP002734, DQ116390. 	 Biochemical character	Os01g0190400	LOC_Os01g09460.1		0		GO:0004396 - hexokinase activity, GO:0005524 - ATP binding, GO:0006096 - glycolysis		
9010	HXK9	OsHXK9	HEXOKINASE-9	Hexokinase 9	HEXOKINASE-9		1	EC=2.7.1.1 Q2KNB7. AP003292, DQ116391.	 Biochemical character	Os01g0722700	LOC_Os01g52450.1, LOC_Os01g52450.2		0		GO:0005524 - ATP binding, GO:0004396 - hexokinase activity, GO:0009507 - chloroplast, GO:0009527 - plastid outer membrane, GO:0016021 - integral to membrane, GO:0006096 - glycolysis		
9011	LTP2	nsLTP2, OsnsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3	LIPID TRANSFER PROTEIN 2	non-specific lipid-transfer protein 2, type-2 lipid transfer protein, Nonspecific Lipid Transfer Protein-2, lipid transfer protein-2	LIPID TRANSFER PROTEIN 2		3	Q10ST8. A2XBN5. P83219. CT829990. KJ174106. PDB code: 1l6h. BGIOSGA011591.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0111300	LOC_Os03g02050.1		0		GO:0009651 - response to salt stress, GO:0008289 - lipid binding, GO:0009414 - response to water deprivation, GO:0006869 - lipid transport, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
9012	ND1	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, OsDNL3, NRL1, OsNRL1, SPO1, OsSPO1, SPO1/OsCSLD4	NARROW LEAF AND DWARF 1	CURLED LEAF AND DWARF 1, Dwarf and narrow-leaf 3, narrow and rolled leaf 1, SMALL PLANT AND ORGAN 1, cellulose synthase-like protein D4	CELLULOSE SYNTHASE LIKE D4 	cd1, dnl3, nrl1, spo1	12	AF435644. ABA99552. AU078363, AU082165, AU082190, AU082189. Q2QNS6. CSLD4 is mainly expressed in rapidly growing tissues. CSLD4 is a Golgi-localized protein. CSLD4 mutation alters wall formation. TO:0000748: leaf morphology trait. PO:0030123: panicle inflorescence. GO:2000024: regulation of leaf development. TO:0006064: rolled leaf. TO:0000975: grain width. TO:0000820: leaf vein morphology trait. TO:0000821: leaf vein size.	 Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity,  Coloration - Chlorophyll,  Reproductive organ - panicle,  Vegetative organ - Root,  Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os12g0555600	LOC_Os12g36890.1		0		GO:0009738 - abscisic acid mediated signaling, GO:0009755 - hormone-mediated signaling, GO:0009736 - cytokinin mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0030244 - cellulose biosynthetic process, GO:0000139 - Golgi membrane, GO:0009739 - response to gibberellin stimulus, GO:0032502 - developmental process, GO:0009737 - response to abscisic acid stimulus, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0007047 - cell wall organization, GO:0009408 - response to heat, GO:0001558 - regulation of cell growth, GO:0051301 - cell division, GO:0051302 - regulation of cell division, GO:0048366 - leaf development, GO:0051726 - regulation of cell cycle, GO:0009734 - auxin mediated signaling pathway, GO:0010817 - regulation of hormone levels	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000655 - leaf development trait, TO:0000227 - root length, TO:0000492 - leaf shape, TO:0002672 - auxin content, TO:0002667 - abscisic acid content, TO:0002675 - gibberellic acid content, TO:0002660 - cytokinin content, TO:0002681 - leaf curling, TO:0000346 - tiller number, TO:0000135 - leaf length, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0000382 - 1000-seed weight, TO:0000040 - panicle length, TO:0000420 - fertility related trait, TO:0000293 - chlorophyll-a content, TO:0001006 - adventitious root number, TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000166 - gibberellic acid sensitivity, TO:0000145 - internode length, TO:0000472 - vascular bundle number, TO:0000357 - growth and development trait, TO:0000163 - auxin sensitivity	PO:0020104 - leaf sheath , PO:0001050 - leaf development stage , PO:0009005 - root 
9013	CSLD2	OsCSLD2	CELLULOSE SYNTHASE LIKE D2		CELLULOSE SYNTHASE LIKE D2		6	LOC_Os06g02180. Q9LHZ7. GO:0071555: cell wall organization.	 Biochemical character	Os06g0111800	LOC_Os06g02180.1		0		GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0000139 - Golgi membrane		
9014	CSLD3	OsCSLD3	CELLULOSE SYNTHASE LIKE D3 		CELLULOSE SYNTHASE LIKE D3 		8	BK000093. Q7EZW6.	 Biochemical character	Os08g0345500	LOC_Os08g25710.1		0		GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane		
9015	CSLD5	OsCSLD5	CELLULOSE SYNTHASE LIKE D5 		CELLULOSE SYNTHASE LIKE D5		6	LOC_Os06g22980.	 Biochemical character	Os06g0336500	LOC_Os06g22980.1		0				
9016	SPL28	OsSPL28, PSL50, OsPSL50, AP1M1, OsAP1M1	SPOTTED LEAF 28	"premature senescence leaf 50, AP-1 complex subunit mu 1, clathrin-associated adaptor protein complex 1 medium subunit mu 1, \"clathrin-associated adaptor protein complex 1, medium subunit mu 1 protein\""	CLATHRIN-ASSOCIATED ADAPTOR PROTEIN COMPLEX 1	psl50, spl28	1	SPL28 is responsible for spotted leaf and early senescence in rice. Regulation of vesicular trafficking, Disease resistance. Q0JK13, NM_001050536. GO:1900056: negative regulation of leaf senescence. GO:0071588: hydrogen peroxide mediated signaling pathway. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic	Os01g0703600	LOC_Os01g50770.1, LOC_Os01g50770.2		0		GO:0043231 - intracellular membrane-bounded organelle, GO:0010150 - leaf senescence, GO:0070265 - necrotic cell death, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0006892 - post-Golgi vesicle-mediated transport, GO:0006952 - defense response, GO:0052545 - callose localization, GO:0010941 - regulation of cell death, GO:0006886 - intracellular protein transport, GO:0060627 - regulation of vesicle-mediated transport, GO:0016192 - vesicle-mediated transport, GO:0030131 - clathrin adaptor complex, GO:0031410 - cytoplasmic vesicle, GO:0005794 - Golgi apparatus	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000112 - disease resistance, TO:0000495 - chlorophyll content, TO:0000063 - mimic response, TO:0000074 - blast disease	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
9017	ETR4	PK3, OsPK3, OsETR4, OS-ETR4	ETHYLENE RESPONSE 4	subfamily I ethylene receptor	PROTEIN KINASE		7	LOC_Os07g15540. AY434734, AF497626, Q71HN7	 Seed - Physiological traits - Storage substances	Os07g0259100	LOC_Os07g15540.1		0		GO:0005789 - endoplasmic reticulum membrane, GO:0000156 - two-component response regulator activity, GO:0000155 - two-component sensor activity, GO:0009873 - ethylene mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0048573 - photoperiodism, flowering	TO:0000173 - ethylene sensitivity, TO:0002616 - flowering time, TO:0000137 - days to heading	
9019	HKT3	OsHKT3, OsHKT2;3, HKT2;3	HIGH-AFFINITY K+ TRANSPORTER 3 		HIGH-AFFINITY K+ TRANSPORTER 3 	oshkt2;3	1	AJ491819, AJ491820. Q8L481. class II HKT transporter. OsHKT2;3 in Chakraborty et al. 2020, Neang et al. 2020, Wang et al. 2022, Alfatih et al. 2022, Wei et al. 2024.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0532600	LOC_Os01g34850.1		0		GO:0006814 - sodium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0009741 - response to brassinosteroid stimulus, GO:0030955 - potassium ion binding, GO:0006813 - potassium ion transport, GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity	PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009005 - root 
9020	HKT5	OsHKT5, OsHKT1;2	HIGH-AFFINITY K+ TRANSPORTER 5		HIGH-AFFINITY K+ TRANSPORTER 5		4	AJ506745	 Biochemical character				0		GO:0006813 - potassium ion transport, GO:0006814 - sodium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0031402 - sodium ion binding, GO:0030955 - potassium ion binding		
9021	HKT6	OsHKT6, OsHKT1;3, HKT1;3, OsHKT1;3_FL, OsHKT1;3_V1, OsHKT1;3_V2, OsHKT1;3_V3, OsHKT1;3_V4, OsHKT1;3_V5	HIGH-AFFINITY K+ TRANSPORTER 6		HIGH-AFFINITY K+ TRANSPORTER 6		2	AJ491817, AJ491818. Q6H501. OsHKT1;3 in Wei et al. 2024.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0175000	LOC_Os02g07830.1		0		GO:0015079 - potassium ion transmembrane transporter activity, GO:0006814 - sodium ion transport, GO:0030955 - potassium ion binding, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0031402 - sodium ion binding, GO:0006813 - potassium ion transport, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0008324 - cation transmembrane transporter activity	TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root 
9022	SKC1	OsHKT8, HKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1	SHOOT K+ CONCENTRATION 1	shoot K+ concentration (QTL)-1(t), Shoot K+ Concentration-1	HIGH-AFFINITY K+ TRANSPORTER 8	HKT1;5NB, HKT1;5K, OsHKT1;5-Ni, OsHKT1;5-NB, oshkt1;5, oshkt1;5-c1, oshkt1;5-c2, oshkt1;5-c3, oshkt1;5-1	1	AJ108663, DQ148410. A2WNZ9. This QTL controls shoot K+ concentration in relation to salt tolerance, being located on chromosome 1 between marker C1211 and S2139. OsSKC1 is the candidate gene for a salinity tolerant QTL Saltol. BAF04762, ABN48306. Q0JNB6, A2WNZ9. EF589340 - EF589342.  EF373553, HQ162137. JQ695808-JQ695816 (O.sativa, O. rufipogon, O. glaberrima). KU994892 (OcHKT1;5 O. coarctata HKT1;5). OsHKT1;5 in Cui et al. 2016, He et al. 2016, Chen et al. 2018, Neang et al. 2020, Ye et al. 2021, Huang et al. 2021, Kim et al. 2021, Wang et al. 2022, Song et al. 2023, Wei et al. 2024. GO:0036376: sodium ion export across plasma membrane.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0307500	LOC_Os01g20160.1		0		GO:0008324 - cation transmembrane transporter activity, GO:0009741 - response to brassinosteroid stimulus, GO:0006814 - sodium ion transport, GO:0031402 - sodium ion binding, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0055075 - potassium ion homeostasis, GO:0051607 - defense response to virus, GO:0055078 - sodium ion homeostasis, GO:0030955 - potassium ion binding, GO:0006950 - response to stress, GO:0006821 - chloride transport, GO:0010233 - phloem transport, GO:0009753 - response to jasmonic acid stimulus	TO:0000609 - potassium content, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000525 - sodium to potassium content ratio, TO:0001034 - relative plant height, TO:0000608 - sodium content, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0020003 - shoot potassium content	PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0005417 - phloem , PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem , PO:0005352 - xylem , PO:0005020 - vascular bundle 
9023	PI29	Pi-29(t), Pi29(t)	PYRICULARIA ORYZAE RESISTANCE 29	Pyricularia oryzae resistance 29, Blast resistance 29			8	Pi-29(t) may correspond to the Pi-11(t) because these two blast resistance genes map in the same area of chromosome 8. PO:0009025; leaf. Original line is IR64 (Indica).	 Tolerance and resistance - Disease resistance			GR:0061352	0	69.0	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
9024	PAIR3		HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3		COILD-COIL PROTEIN	pair3, pair3-1, pair3-2	10	FJ449711, FJ449712, B9G5N1, Homologous chromosome pairing and synapsis in meiosis.  T-DNA insertion lines, pair3-1 and pair3-2, exhibit male and female sterility.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os10g0405500	LOC_Os10g26560.1		0		GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis, GO:0000237 - leptotene, GO:0000228 - nuclear chromosome, GO:0005634 - nucleus, GO:0007129 - synapsis, GO:0000238 - zygotene		
9025	HKT9	OsHKT9, OsHKT2;4, HKT2;4	HIGH-AFFINITY K+ TRANSPORTER 9		HIGH-AFFINITY K+ TRANSPORTER 9	oshkt2;4	6	AJ491854, AJ491855. Q8L4K5. class II HKT transporter. OsHKT2;4 in Wei et al. 2024.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0701600	LOC_Os06g48800.1		0		GO:0030955 - potassium ion binding, GO:0008324 - cation transmembrane transporter activity, GO:0009741 - response to brassinosteroid stimulus, GO:0005886 - plasma membrane, GO:0006814 - sodium ion transport, GO:0015079 - potassium ion transmembrane transporter activity, GO:0006813 - potassium ion transport, GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0031402 - sodium ion binding, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009006 - shoot system 
9026	ARK1	OsARK1, OsAKR4-1, AKR4-1	ALDO-KETO REDUCTASE 1	Aldo-Keto reductase 1, Aldo-Keto Reductase 4-1, Group 4 Aldo-Keto Reductase 1	ALDO-KETO REDUCTASE 1		1	Overexpression  if OsAKR1 increases oxidative and heat stress tolerance by malondialdehyde and methylglyoxal detoxification. OsAKR4-1 in Chen et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0847600	LOC_Os01g62860.1		0		GO:0016491 - oxidoreductase activity, GO:0009635 - response to herbicide, GO:0018920 - glyphosate metabolic process, GO:0019632 - shikimate metabolic process	TO:0005006 - glyphosate sensitivity, TO:0000058 - herbicide sensitivity	PO:0025395 - floral organ , PO:0009009 - plant embryo , PO:0009005 - root , PO:0009037 - lemma , PO:0009039 - glume , PO:0009047 - stem , PO:0009072 - plant ovary 
9028	AKR2	OsAKR2, AKR4C14, OsAKR4-2, AKR4-2	ALDO-KETO REDUCTASE 2	Aldo-Keto Reductase 4C14, Aldo-Keto Reductase 4-2, Group 4 Aldo-Keto Reductase 2	ALDO-KETO REDUCTASE 2		1	GQ227709, ACS92968. D15203. Aldo-Keto Reductase, AKR4 subfamily C. OsAKR4-2 in Chen et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0847700	LOC_Os01g62870.1, LOC_Os01g62870.2		0		GO:0018920 - glyphosate metabolic process, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0016491 - oxidoreductase activity, GO:0046686 - response to cadmium ion, GO:0009635 - response to herbicide	TO:0005006 - glyphosate sensitivity, TO:0000058 - herbicide sensitivity	
9029	AKR3	OsAKR3, OsALR1, ALR1, OsAKR4-3, AKR4-3	ALDO-KETO REDUCTASE 3	aldose reductase 1, Aldo-Keto Reductase 4-3, Group 4 Aldo-Keto Reductase 3	ALDO-KETO REDUCTASE 3		1	OsAKR4-3 in Chen et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0847800	LOC_Os01g62880.1, LOC_Os01g62880.2		0		GO:0016491 - oxidoreductase activity, GO:0018920 - glyphosate metabolic process, GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity, TO:0005006 - glyphosate sensitivity	
9031	RNRL2		RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 2 		RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 2 		2	EU602346,chloroplast biogenesis	 Biochemical character	Os02g0804900	LOC_Os02g56100.1		0				
9032	RNRS2		RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2   		RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2   		6	EU602347. Chloroplast biogenesis.	 Biochemical character	Os06g0127900	LOC_Os06g03720.1		0		GO:0055114 - oxidation reduction, GO:0009658 - chloroplast organization, GO:0009263 - deoxyribonucleotide biosynthetic process		
9033	ELIP	OsELIP	EARLY LIGHT INDUCIBLE PROTEIN	early light-induced protein	EARLY LIGHT INDUCIBLE PROTEIN		1	D85513.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0246400	LOC_Os01g14410.1		0		GO:0009535 - chloroplast thylakoid membrane		
9034	CRP	OsFTL14, FTL14	COLD REGULATED PROTEIN	FT-like gene 14	COLD REGULATED PROTEIN		5	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0468800	LOC_Os05g39250.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000075 - light sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
9035	DHN6	OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21, Rab17, OsRab17	DEHYDRIN 6	late embryogenesis abundant protein 25, endosperm-specific gene 143	DEHYDRIN 6		11	CT828256. Rab17 in Zhang et al. 2020, Shi et al. 2021. OsLEA25 in Liu et al. 2022.	 Tolerance and resistance - Stress tolerance	Os11g0451700	LOC_Os11g26570.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0006950 - response to stress, GO:0005829 - cytosol, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0009631 - cold acclimation, GO:0009415 - response to water	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000237 - water stress trait, TO:0000615 - abscisic acid sensitivity	
9036	LEA14	Lea14A, OsLEA5, OsEnS-2	LATE EMBRYOGENESIS ABUNDANT PROTEIN	late embryogenesis abundant protein 5, endosperm-specific gene 2	LATE EMBRYOGENESIS ABUNDANT PROTEIN		1	LOC_Os01g12580.	 Tolerance and resistance - Stress tolerance	Os01g0225600	LOC_Os01g12580.1		0		GO:0050832 - defense response to fungus, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0009644 - response to high light intensity, GO:0005886 - plasma membrane		
9037	WSI18	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsWsi18, OsLEA14/WSI18	WATER STRESS INDUCIBLE PROTEIN 18	late embryogenesis abundant protein 14, water stress-induced 18	WATER STRESS INDUCIBLE PROTEIN 18	wsi18j	1	AB001682 (promoter sequence). GQ903792 (promoter sequence). D26536. AF246702 (promoter sequence). Q94JF2.	 Tolerance and resistance - Stress tolerance	Os01g0705200	LOC_Os01g50910.1, LOC_Os01g50910.2		0		GO:0006970 - response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
9038	TPP2	OsTPP2	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2	trehalose-6-phosphate phosphatase 2	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2		10	AB277360. BAF34519.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0553300	LOC_Os10g40550.1, LOC_Os10g40550.2, LOC_Os10g40555.1		0		GO:0004805 - trehalose-phosphatase activity, GO:0009409 - response to cold, GO:0005992 - trehalose biosynthetic process	TO:0000303 - cold tolerance	
9039	TRE1	OsTRE, OsTRE1, TRE	TREHALASE 1	trehalase 1	TREHALASE 1		10	Q9FWC1. BGIOSGA031535.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0521000	LOC_Os10g37660.1		0		GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0004555 - alpha,alpha-trehalase activity, GO:0009414 - response to water deprivation, GO:0005993 - trehalose catabolic process, GO:0009651 - response to salt stress	TO:0000300 - glucose content, TO:0006005 - fructose content, TO:0000276 - drought tolerance, TO:0000291 - carbohydrate content, TO:0006001 - salt tolerance, TO:0000333 - sugar content, TO:0000615 - abscisic acid sensitivity, TO:0000328 - sucrose content, TO:0000303 - cold tolerance	
9040	TPS1	OsTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE 1		TREHALOSE-6-PHOSPHATE SYNTHASE 1		5	HM050424. The genome of rice contains 11 OsTPS genes, and only OsTPS1 shows TPS activity. a target of osa-miR171d-5p.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0518600	LOC_Os05g44210.1, LOC_Os05g44210.2		0		GO:0005992 - trehalose biosynthetic process, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0070413 - trehalose metabolism in response to stress, GO:0016311 - dephosphorylation, GO:0003824 - catalytic activity		
9041	TPS2	OsTPS2	TREHALOSE-6-PHOSPHATE SYNTHASE 2		TREHALOSE-6-PHOSPHATE SYNTHASE 2 		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0749400	LOC_Os01g54560.1, LOC_Os01g54560.2, LOC_Os01g54560.3		0				
9042	TPS3	OsTPS3	TREHALOSE-6-PHOSPHATE SYNTHASE 3		TREHALOSE-6-PHOSPHATE SYNTHASE 3		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0730300	LOC_Os01g53000.1, LOC_Os01g53000.2		0				
9043	TPS4	OsTPS4	 TREHALOSE-6-PHOSPHATE SYNTHASE 4		 TREHALOSE-6-PHOSPHATE SYNTHASE 4		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0224300	LOC_Os03g12360.1, LOC_Os03g12360.2		0				
9044	TPS5	OsTPS5	 TREHALOSE-6-PHOSPHATE SYNTHASE 5		 TREHALOSE-6-PHOSPHATE SYNTHASE 5		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0790500	LOC_Os02g54820.1, LOC_Os02g54820.2, LOC_Os02g54820.3		0				
9045	TPS6	OsTPS6	TREHALOSE-6-PHOSPHATE SYNTHASE 6		TREHALOSE-6-PHOSPHATE SYNTHASE 6		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0517200	LOC_Os05g44100.1		0				
9046	TPS7	OsTPS7	TREHALOSE-6-PHOSPHATE SYNTHASE 7		TREHALOSE-6-PHOSPHATE SYNTHASE 7		8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0414700	LOC_Os08g31980.1		0				
9047	TPS8	OsTPS8, OsTPS1, TPS1	TREHALOSE-6-PHOSPHATE SYNTHASE 8	trehalose-6-phosphate synthase 1	TREHALOSE-6-PHOSPHATE SYNTHASE 8		8	OsTPS1 in Liu et al. 2013, Zhang et al. 2018.	 Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os08g0445700	LOC_Os08g34580.1, LOC_Os08g34580.2		0		GO:0010182 - sugar mediated signaling, GO:0010431 - seed maturation, GO:0003824 - catalytic activity, GO:0005992 - trehalose biosynthetic process	TO:0000333 - sugar content, TO:0002661 - seed maturation	PO:0007632 - seed maturation stage 
9048	TPS9	OsTPS9	TREHALOSE-6-PHOSPHATE SYNTHASE 6		TREHALOSE-6-PHOSPHATE SYNTHASE 6		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0427800	LOC_Os09g25890.1, LOC_Os09g25890.2		0				
9049	TPS10	OsTPS10	TREHALOSE-6-PHOSPHATE SYNTHASE 10		TREHALOSE-6-PHOSPHATE SYNTHASE 10		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0397300	LOC_Os09g23350.1		0				
9050	TPS11	OsTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE 11		TREHALOSE-6-PHOSPHATE SYNTHASE 11		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0376800	LOC_Os09g20990.1		0				
9051	BC12	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12, LGW, OsLGW	BRITTLE CULM 12	Gibberellin-deficient dwarf 1, gibberellin-deficient dwarf1, kinesin-4 protein BRITTLE CULM12, kinesin-like protein BRITTLE CULM12, OsKinesin-4, low grain weight	KINESIN-4 PROTEIN	bc12-1, bc12-2, gdd1, lgw	9	Q6YUL8. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape	Os09g0114500	LOC_Os09g02650.1		0		GO:0003777 - microtubule motor activity, GO:0007018 - microtubule-based movement, GO:0048316 - seed development, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0009832 - plant-type cell wall biogenesis, GO:0006351 - transcription, DNA-dependent, GO:0005856 - cytoskeleton, GO:0051510 - regulation of unidimensional cell growth, GO:0005737 - cytoplasm, GO:0005874 - microtubule, GO:0010229 - inflorescence development, GO:0010215 - cellulose microfibril organization, GO:0042127 - regulation of cell proliferation, GO:0007049 - cell cycle, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0008017 - microtubule binding, GO:0008574 - plus-end-directed microtubule motor activity, GO:0005871 - kinesin complex, GO:0005524 - ATP binding, GO:0040008 - regulation of growth	TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000397 - grain size	PO:0020142 - stem internode , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0009005 - root , PO:0001083 - inflorescence development stage 
9052	BC1L4	OsBC1L4	BRITTLE CULM-LIKE 4		COBRA-LIKE PROTEIN								0				
9053	CESA1	OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1	CELLULOSE SYNTHASE A1	Cellulose synthase A catalytic subunit 1 [UDP-forming], Cellulose synthase A catalytic subunit 1, RSW1-like cellulose synthase catalytic subunit	CELLULOSE SYNTHASE A1		5	AF030052, Q6AT26. D39394.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0176100	LOC_Os05g08370.1		0		GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0007047 - cell wall organization, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0008270 - zinc ion binding, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity	
9054	CESA2	OsCesA2, OsCESA2, OS_CESA02	CELLULOSE SYNTHASE A2	Cellulose synthase A catalytic subunit 2 [UDP-forming], Cellulose synthase A catalytic subunit 2	CELLULOSE SYNTHASE A2		3	Q84M43.	 Biochemical character	Os03g0808100	LOC_Os03g59340.1		0		GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0007047 - cell wall organization, GO:0008270 - zinc ion binding		
9055	CESA3	OsCesA3, OsCESA3, OS_CESA03	CELLULOSE SYNTHASE A3	Cellulose synthase A catalytic subunit 3 [UDP-forming], Cellulose synthase A catalytic subunit 3	CELLULOSE SYNTHASE A3		7	Q69V23. TO:0000993: cellulose content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0424400	LOC_Os07g24190.3, LOC_Os07g24190.2, LOC_Os07g24190.1		0		GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0007047 - cell wall organization, GO:0030244 - cellulose biosynthetic process, GO:0009642 - response to light intensity, GO:0016021 - integral to membrane, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0009723 - response to ethylene stimulus, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding	TO:0000173 - ethylene sensitivity, TO:0000460 - light intensity sensitivity	PO:0000025 - root tip 
9056	CESA5	OsCesA5, OsCESA5, OS_CESA05	CELLULOSE SYNTHASE A5	Cellulose synthase A catalytic subunit 5 [UDP-forming], Cellulose synthase A catalytic subunit 5	CELLULOSE SYNTHASE A5		3	Q851L8.	 Biochemical character	Os03g0837100	LOC_Os03g62090.1		0		GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0007047 - cell wall organization		
9057	CESA6	OsCesA6, OsCESA6, OS_CESA06	CELLULOSE SYNTHASE A6	Cellulose synthase A catalytic subunit 6 [UDP-forming], Cellulose synthase A catalytic subunit 6	CELLULOSE SYNTHASE A6		7	Q6YVM4.	 Biochemical character	Os07g0252400	LOC_Os07g14850.1		0		GO:0008270 - zinc ion binding, GO:0007047 - cell wall organization, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
9058	CESA8	OsCesA8, OsCESA8, OS_CESA08, CesA8	CELLULOSE SYNTHASE A8	Cellulose synthase A catalytic subunit 8 [UDP-forming], Cellulose synthase A catalytic subunit 8, CELLULOSE SYNTHASE8	CELLULOSE SYNTHASE A8		7	Q84ZN6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0208500	LOC_Os07g10770.1		0		GO:0016021 - integral to membrane, GO:0007047 - cell wall organization, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0008270 - zinc ion binding, GO:0009642 - response to light intensity, GO:0005886 - plasma membrane, GO:0030244 - cellulose biosynthetic process	TO:0000460 - light intensity sensitivity	
9059	CESA10	OsCesA10, OsCESA10	CELLULOSE SYNTHASE A10	Cellulose synthase A catalytic subunit 10 [UDP-forming], Cellulose synthase A catalytic subunit 10	CELLULOSE SYNTHASE A10		12	LOC_Os12g29300. GO:0080181: lateral root branching. GO:0080147: root hair cell development.	 Vegetative organ - Root,  Biochemical character	Os12g0477200	LOC_Os12g29300.1		0		GO:0030244 - cellulose biosynthetic process, GO:0048364 - root development, GO:0007047 - cell wall organization, GO:0016021 - integral to membrane, GO:0016760 - cellulose synthase (UDP-forming) activity	TO:0000656 - root development trait, TO:0000043 - root anatomy and morphology trait	PO:0007520 - root development stage 
9060	CESA11	OsCesA11, OsCESA11, OsCLD1, CLD1	CELLULOSE SYNTHASE A11	Cellulose synthase A catalytic subunit 11 [UDP-forming], Cellulose synthase A catalytic subunit 11	CELLULOSE SYNTHASE A11		6	Q69XK5. OsCLD1 in Shi et al. 2016.	 Biochemical character	Os06g0601600	LOC_Os06g39970.1		0		GO:0016021 - integral to membrane, GO:0009833 - primary cell wall biogenesis, GO:0005794 - Golgi apparatus, GO:0005802 - trans-Golgi network, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0007047 - cell wall organization, GO:0005886 - plasma membrane		
9061	DWARF4	OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4	DWARF4	brassinosteroid C-22 hydroxylase, Cytochrome P450 90B2	CYTOCHROME P450 90B2	dwarf4-1	3	Q5CCK3. AB206579. KC610990-KC611001 (O. sativa and wild rice species, partial cds).	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0227700	LOC_Os03g12660.1		0		GO:0010012 - steroid 22-alpha hydroxylase activity, GO:0009826 - unidimensional cell growth, GO:0005783 - endoplasmic reticulum, GO:0004497 - monooxygenase activity, GO:0009741 - response to brassinosteroid stimulus, GO:0005886 - plasma membrane, GO:0016132 - brassinosteroid biosynthetic process, GO:0005506 - iron ion binding, GO:0009742 - brassinosteroid mediated signaling, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0007275 - multicellular organismal development, GO:0009753 - response to jasmonic acid stimulus, GO:0051607 - defense response to virus, GO:0030187 - melatonin biosynthetic process, GO:0048366 - leaf development, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016021 - integral to membrane, GO:0010358 - leaf shaping, GO:0016125 - sterol metabolic process, GO:0010268 - brassinosteroid homeostasis	TO:0000020 - black streak dwarf virus resistance, TO:0000172 - jasmonic acid sensitivity	
9062	CPD1	OsCPD1, CYP90A3, CYP90A3/OsCPD1, CPD, OsCPD2, CPD2	CPD1	brassinosteroid C-23 hydrozylase, CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM 1, Cytochrome P450 90A3	CYTOCHROME P450 90A3	oscpd1-1, oscpd1-2	11	AB206580. one of the orthologs to the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM (CPD) gene. OsCPD2 in Zhang et al. 2023.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os11g0143200	LOC_Os11g04710.1		0		GO:0016132 - brassinosteroid biosynthetic process, GO:0009637 - response to blue light, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009753 - response to jasmonic acid stimulus, GO:0051607 - defense response to virus, GO:0009742 - brassinosteroid mediated signaling, GO:0020037 - heme binding	TO:0002676 - brassinosteroid content, TO:0000159 - blue light sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0000172 - jasmonic acid sensitivity	
9063	DWARF4L	OsDWARF4L	DWARF4-LIKE				4		 Vegetative organ - Culm				0				
9064	SG1	OsSG1, Sg1	SHORT GRAIN 1	SHORT GRAIN1, Short grain 1		Sg1, Sg1-D	9	Rice overexpressor shows short grain phenotype. Knock-down line shows long grain phenotype.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os09g0459200	LOC_Os09g28520.1		0		GO:0009742 - brassinosteroid mediated signaling, GO:0008285 - negative regulation of cell proliferation, GO:0009741 - response to brassinosteroid stimulus, GO:0010229 - inflorescence development, GO:0048316 - seed development	TO:0000326 - leaf color, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000145 - internode length, TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0000397 - grain size, TO:0000040 - panicle length, TO:0000370 - leaf width, TO:0000146 - seed length, TO:0000734 - grain length	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0007089 - stem elongation stage 
9065	CSLA1	OsCslA1, OsCSLA1	CELLULOSE SYNTHASE LIKE A1		CELLULOSE SYNTHASE LIKE A1		2	BK000080. Q7PC76.	 Biochemical character	Os02g0192500	LOC_Os02g09930.1, LOC_Os02g09930.2		0		GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0047259 - glucomannan 4-beta-mannosyltransferase activity, GO:0051753 - mannan synthase activity		
9066	CSLC1	OsCslC1, OsCSLC1	CELLULOSE SYNTHASE LIKE C1		CELLULOSE SYNTHASE LIKE C1	Oscslc1	1	BK000086. Q8LIY0. GO:0080157: regulation of plant-type cell wall organization or biogenesis. GO:2000280: regulation of root development.	 Biochemical character,  Vegetative organ - Root	Os01g0766900	LOC_Os01g56130.1		0		GO:0009873 - ethylene mediated signaling pathway, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0048364 - root development, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0052386 - cell wall thickening, GO:0009734 - auxin mediated signaling pathway, GO:0009723 - response to ethylene stimulus	TO:0000227 - root length, TO:0000656 - root development trait, TO:0000173 - ethylene sensitivity	PO:0000025 - root tip , PO:0007520 - root development stage 
9067	CSLE1	OsCslE1, OsCSLE1	CELLULOSE SYNTHASE LIKE E1		CELLULOSE SYNTHASE LIKE E1		9	AF432500, AF435647, AU068392, AU166543. Q651X7.	 Biochemical character	Os09g0478100	LOC_Os09g30120.1, LOC_Os09g30120.2		0		GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0000139 - Golgi membrane, GO:0030244 - cellulose biosynthetic process, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum		
9068	CSLF1	OsCslF1, OsCSLF1	CELLULOSE SYNTHASE LIKE F1		CELLULOSE SYNTHASE LIKE F1		7	AF432502. Q6ZF89.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os07g0553000	LOC_Os07g36700.1		0		GO:0002213 - defense response to insect, GO:0000139 - Golgi membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
9069	CSLH1	OsCslH1, OsCSLH1	CELLULOSE SYNTHASE LIKE H1		CELLULOSE SYNTHASE LIKE H1		10	BK000084, AF435646, AU085988. Q339N5.	 Biochemical character	Os10g0341700	LOC_Os10g20090.3, LOC_Os10g20090.2, LOC_Os10g20090.1		0		GO:0000139 - Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane		
9071	ACO1	OsACO1, ACO	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 1	ACC oxidase 1, ACC oxidase	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 1		9	X85747. Q0J1C1. a predicted target of osa-miR1846a/b-5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0451400	LOC_Os09g27820.1		0		GO:0031418 - L-ascorbic acid binding, GO:0009620 - response to fungus, GO:0005507 - copper ion binding, GO:0009815 - 1-aminocyclopropane-1-carboxylate oxidase activity, GO:0009651 - response to salt stress, GO:0009693 - ethylene biosynthetic process, GO:0009727 - detection of ethylene stimulus, GO:0009835 - ripening, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0005618 - cell wall	TO:0000303 - cold tolerance	
9072	ACO2	OsACO2, OsACO1	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 2	ACC oxidase 2	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 2		9	AF049888. OsACO1 in Ye et al. 2021, Chen et al. 2022. GO:1904585: response to putrescine.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0451000	LOC_Os09g27750.1		0		GO:0007584 - response to nutrient, GO:0009727 - detection of ethylene stimulus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009733 - response to auxin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005507 - copper ion binding, GO:0005886 - plasma membrane, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0009620 - response to fungus, GO:0009693 - ethylene biosynthetic process, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000163 - auxin sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0020103 - flag leaf 
9073	ACO3	OsACO3, ACO2, OsACO2	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 3	ACC oxidase 3	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 3		2	AF049889. OsACO2 in Li et al. 2022. GO:1904585: response to putrescine. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0771600	LOC_Os02g53180.3, LOC_Os02g53180.2, LOC_Os02g53180.1		0		GO:0009620 - response to fungus, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0010446 - response to alkalinity, GO:0009727 - detection of ethylene stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005886 - plasma membrane, GO:0005507 - copper ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0005618 - cell wall, GO:0009693 - ethylene biosynthetic process	TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000481 - alkali sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root 
9074	ACO4	OsACO4	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 4	ACC oxidase 4	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 4		11	a target of osa-miR1846 (osa-miR1846a-5p and osa-miR1846b-5p). a target of osa-miR531b. 	 Seed - Physiological traits - Dormancy,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0186900	LOC_Os11g08380.1		0		GO:0009693 - ethylene biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0010446 - response to alkalinity, GO:0009737 - response to abscisic acid stimulus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0010162 - seed dormancy	TO:0000615 - abscisic acid sensitivity, TO:0000481 - alkali sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000253 - seed dormancy	PO:0009005 - root , PO:0009009 - plant embryo 
9075	ACO5	OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 5 	ACC oxidase 5, 2-oxoglutarate-dependent dioxygenase 14	AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 5		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0149400	LOC_Os05g05680.1		0		GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009266 - response to temperature stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000432 - temperature response trait	PO:0009005 - root 
9076	SSG6	OsACS6, ACS6	SUBSTANDARD STARCH GRAIN6	substandard starch grain 6, ACC SYNTHASE 6	ACC SYNTHASE 6	ssg6	6		 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Biochemical character	Os06g0130400	LOC_Os06g03990.1		0		GO:0009658 - chloroplast organization, GO:0016847 - 1-aminocyclopropane-1-carboxylate synthase activity, GO:0033097 - amyloplast membrane, GO:0009693 - ethylene biosynthetic process	TO:0002715 - chloroplast development trait, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000402 - grain width, TO:0002655 - starch grain size, TO:0000266 - chalky endosperm, TO:0002658 - starch grain synthesis	PO:0009089 - endosperm , PO:0009005 - root 
9077	DEP2		DENSE AND ERECT PANICLE 2					Affect the elongation of rachis and primary and secondary branches. Novel plant-specific protein.	 Reproductive organ - Panicle, Mode of branching				0				
9078	DEP3	dep3, OspPLAIIIdelta, pPLAIIIdelta	DENSE AND ERECT PANICLE 3	dense and erect panicle 3, Patatin-related phospholipase A III delta		dep3	6	DEP3 gene was predicted to encode a patatin-like phospholipase A2 (PLA2) superfamily domain-containing protein. Control panicle length, grain number per panicle. TO:0000800: inflorescence density, TO:0000847: panicle anatomy and morphology trait. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0677000	LOC_Os06g46350.1		0		GO:0016787 - hydrolase activity, GO:0006629 - lipid metabolic process	TO:0000397 - grain size, TO:0002759 - grain number, TO:0000050 - inflorescence branching, TO:0000734 - grain length, TO:0000396 - grain yield	
9079	EL3		ELICITOR 3				4	D64039	 Biochemical character				0				
9081	GA2OX5	OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32	GIBBERELLIN 2-OXIDASE 5	GA 2-oxidase 5, 2-oxoglutarate-dependent dioxygenase 32	GIBBERELLIN 2-OXIDASE 5		7	BAC10398, AP005187	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0103500	LOC_Os07g01340.1		0		GO:0010212 - response to ionizing radiation, GO:0009651 - response to salt stress, GO:0009685 - gibberellin metabolic process	TO:0002693 - gravity response trait, TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	
9082	GA2OX6	OsGA2ox6	GIBBERELLIN 2-OXIDASE 6	GA 2-oxidase 6	GIBBERELLIN 2-OXIDASE 6		4	CAE03751, AL662958	 Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0522500	LOC_Os04g44150.1		0		GO:0009685 - gibberellin metabolic process, GO:0009651 - response to salt stress	TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0006001 - salt tolerance	
9083	GA2OX7	OsGA2ox7	GIBBERELLIN 2-OXIDASE 7	GA 2-oxidase 7	GIBBERELLIN 2-OXIDASE 7	ga2ox7	1		 Character as QTL - Plant growth activity,  Biochemical character,  Vegetative organ - Culm	Os01g0209700	LOC_Os01g11150.1		0		GO:0045926 - negative regulation of growth, GO:0009625 - response to insect, GO:0009753 - response to jasmonic acid stimulus, GO:0009685 - gibberellin metabolic process	TO:0002675 - gibberellic acid content, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000172 - jasmonic acid sensitivity	
9084	GA2OX8	OsGA2ox8	GIBBERELLIN 2-OXIDASE 8	gibberellin 2-beta-dioxygenase 8	GIBBERELLIN 2-OXIDASE 8		5	OsGA2ox7 in Tang et al. (2010). Os.51835 in Zhu et al. 2017. TO:0020106: Indole-3-acetic acid content. The transcriptome datasets presented in this study can be found below: China National Center for Bioinformation, Genome Sequence Archive (https://bigd.big.ac.cn/gsa/ accessed on 15 March 2021), accession no: CRA004028. GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character,  Seed - Physiological traits - Dormancy	Os05g0560900	LOC_Os05g48700.1		0		GO:0010336 - gibberellic acid homeostasis, GO:0048364 - root development, GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009845 - seed germination, GO:0034059 - response to anoxia, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0009685 - gibberellin metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0006970 - response to osmotic stress, GO:0045487 - gibberellin catabolic process	TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000656 - root development trait, TO:0002675 - gibberellic acid content, TO:0000152 - panicle number, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000340 - total soluble sugar content, TO:0000227 - root length, TO:0000576 - stem length, TO:0002657 - oxidative stress	PO:0007520 - root development stage , PO:0007057 - 0 seed germination stage , PO:0009005 - root , PO:0009006 - shoot system 
9085	GA2OX9	OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35	GIBBERELLIN 2-OXIDASE 9	GA 2-oxidase 9, 2-oxoglutarate-dependent dioxygenase 35	GIBBERELLIN 2-OXIDASE 9		2	GA2ox7 in Lin et al. 2017.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0630300	LOC_Os02g41954.2, LOC_Os02g41954.1		0		GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0006970 - response to osmotic stress, GO:0009685 - gibberellin metabolic process, GO:0046689 - response to mercury ion, GO:0046687 - response to chromate, GO:0010212 - response to ionizing radiation, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000034 - chromium sensitivity, TO:0000161 - radiation response trait, TO:0000166 - gibberellic acid sensitivity	
9087	GA2OX10	OsGA2ox10	GIBBERELLIN 2-OXIDASE 10		GIBBERELLIN 2-OXIDASE 10		5	OSJNBb0016G07(9180-13210) = OSJNBb0016G07.1. we inferred that OsGA2ox10 is a pseudogene (Hsieh et al. 2021).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0208500/Os05g0208550	LOC_Os05g11810.2, LOC_Os05g11810.1		0		GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009685 - gibberellin metabolic process	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
9088	SWEET1A	OsSWEET1a, SWEET1a	SWEET1A	sugar will eventually be exported transporter 1a	SUGAR TRANSPORTER SWEET1A		1	Q8RZQ8.	 Biochemical character	Os01g0881300	LOC_Os01g65880.3, LOC_Os01g65880.2, LOC_Os01g65880.1		0		GO:0009739 - response to gibberellin stimulus, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport, GO:0010150 - leaf senescence, GO:0009735 - response to cytokinin stimulus	TO:0000249 - leaf senescence, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0001054 - 4 leaf senescence stage 
9089	SWEET1B	OsSWEET1b, SWEET1b	SWEET1B	sugar will eventually be exported transporter 1b	SUGAR TRANSPORTER SWEET1B	ossweet1b	5	Q60EC2. GO:0098708: glucose import across plasma membrane. GO:0140271: hexose import across plasma membrane. GO:0140425: galactose import across plasma membrane. GO:1903647: negative regulation of chlorophyll catabolic process. GO:1902326: positive regulation of chlorophyll biosynthetic process.  TO:0000975: grain width.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Biochemical character,  Seed - Morphological traits - Grain shape	Os05g0426000	LOC_Os05g35140.1		0		GO:0015757 - galactose transport, GO:0009733 - response to auxin stimulus, GO:0005886 - plasma membrane, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0015996 - chlorophyll catabolic process, GO:0015995 - chlorophyll biosynthetic process, GO:0034219 - carbohydrate transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010150 - leaf senescence, GO:0046323 - glucose import, GO:0009409 - response to cold	TO:0000040 - panicle length, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000249 - leaf senescence, TO:0000382 - 1000-seed weight, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000696 - starch content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability, TO:0000326 - leaf color, TO:0000307 - hexose content, TO:0000300 - glucose content, TO:0000605 - hydrogen peroxide content, TO:0000333 - sugar content, TO:0000357 - growth and development trait, TO:0000432 - temperature response trait	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0001054 - 4 leaf senescence stage 
9090	SWEET2A	OsSWEET2a, SWEET2a	SWEET2A	sugar will eventually be exported transporter 2a	SUGAR TRANSPORTER SWEET2A		1	Q5JJY5.	 Biochemical character	Os01g0541800	LOC_Os01g36070.1		0		GO:0051119 - sugar transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0005887 - integral to plasma membrane, GO:0008643 - carbohydrate transport, GO:0034219 - carbohydrate transmembrane transport	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9091	SWEET2B	OsSWEET2b, SWEET2b	SWEET2B	sugar will eventually be exported transporter 2b	SUGAR TRANSPORTER SWEET2B		1	rice orthologue of AtSWEET2. vacuolar glucose transporter. PDB (Protein Data Bank) accession: 5CTG, 5CTH. Q5N8J1.	 Biochemical character	Os01g0700100	LOC_Os01g50460.1		0		GO:0008643 - carbohydrate transport, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0034219 - carbohydrate transmembrane transport, GO:0051119 - sugar transmembrane transporter activity	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9092	SWEET3A	OsSWEET3a, SWEET3a	SWEET3A	sugar will eventually be exported transporter 3a	SUGAR TRANSPORTER SWEET3A		5	Q0DJY3. OsR498G0510017200.01 in Xie et al. 2022. GO:1904659: glucose transmembrane transport. GO:1905200: gibberellic acid transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Biochemical character	Os05g0214300	LOC_Os05g12320.1		0		GO:0016021 - integral to membrane, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0009845 - seed germination, GO:0048367 - shoot development, GO:0005887 - integral to plasma membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000654 - shoot development trait, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	PO:0005020 - vascular bundle , PO:0025527 - shoot system development stage , PO:0007057 - 0 seed germination stage , PO:0008039 - stem base 
9093	GELP12	OsGELP12, OsGELP12a, OsGELP12b, OsGELP12c	GDSL ESTERASE/LIPASE PROTEIN 12	GDSL esterase/lipase protein 12	GDSL ESTERASE/LIPASE PROTEIN 12		1		 Biochemical character	Os01g0223200	LOC_Os01g12320.1, LOC_Os01g12320.2, LOC_Os01g12320.3		0		GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
9094	SWEET4	OsSWEET4	SWEET4	sugar will eventually be exported transporter 4	SUGAR TRANSPORTER SWEET4	ossweet4	2	Q6K4V2. the rice ortholog of maize ZmSWEET4c. 	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os02g0301100	LOC_Os02g19820.1		0		GO:0009733 - response to auxin stimulus, GO:0008643 - carbohydrate transport, GO:0015758 - glucose transport, GO:0009960 - endosperm development, GO:0005887 - integral to plasma membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0009749 - response to glucose stimulus, GO:0008645 - hexose transport, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0016021 - integral to membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0010431 - seed maturation, GO:0015757 - galactose transport, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0000167 - cytokinin sensitivity, TO:0000333 - sugar content, TO:0002661 - seed maturation, TO:0000100 - shrunken endosperm, TO:0000166 - gibberellic acid sensitivity, TO:0000447 - filled grain number, TO:0000163 - auxin sensitivity, TO:0000696 - starch content	PO:0001054 - 4 leaf senescence stage , PO:0007632 - seed maturation stage , PO:0025196 - basal endosperm transfer layer , PO:0007633 - endosperm development stage 
9095	SWEET5	OsSWEET5	SWEET5	sugar will eventually be exported transporter 5	SUGAR TRANSPORTER SWEET5	sweet5	5	Q6L568. GO:0060918: auxin transport.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0588500	LOC_Os05g51090.1		0		GO:0034219 - carbohydrate transmembrane transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0009734 - auxin mediated signaling pathway, GO:0009735 - response to cytokinin stimulus, GO:0010150 - leaf senescence, GO:0015757 - galactose transport, GO:0005887 - integral to plasma membrane, GO:0009739 - response to gibberellin stimulus, GO:0016021 - integral to membrane	TO:0000300 - glucose content, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000227 - root length, TO:0000249 - leaf senescence, TO:0002672 - auxin content, TO:0000333 - sugar content, TO:0000421 - pollen fertility, TO:0006005 - fructose content, TO:0000696 - starch content, TO:0000207 - plant height	PO:0009005 - root , PO:0009066 - anther , PO:0001054 - 4 leaf senescence stage 
9096	SWEET6A	OsSWEET6a, SWEET6a	SWEET6A	sugar will eventually be exported transporter 6a	SUGAR TRANSPORTER SWEET6A	sweet6a	1	Q8LR09. OsR498G0101499300.01 in Xie et al. 2022.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0606000	LOC_Os01g42110.1		0		GO:0009733 - response to auxin stimulus, GO:0034219 - carbohydrate transmembrane transport, GO:0016021 - integral to membrane, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane	TO:0000300 - glucose content, TO:0000163 - auxin sensitivity, TO:0006005 - fructose content, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000421 - pollen fertility, TO:0000696 - starch content	PO:0009066 - anther , PO:0009005 - root 
9097	SWEET6B	OsSWEET6b, SWEET6b	SWEET6B	sugar will eventually be exported transporter 6b	SUGAR TRANSPORTER SWEET6B	sweet6b	1	Q8W0K2.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0605700	LOC_Os01g42090.1		0		GO:0034219 - carbohydrate transmembrane transport, GO:0010150 - leaf senescence, GO:0051119 - sugar transmembrane transporter activity, GO:0008643 - carbohydrate transport, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane	TO:0000421 - pollen fertility, TO:0006005 - fructose content, TO:0000249 - leaf senescence, TO:0000300 - glucose content, TO:0000696 - starch content	PO:0001054 - 4 leaf senescence stage , PO:0009066 - anther , PO:0009005 - root 
9098	SWEET7A	OsSWEET7a, SWEET7a	SWEET7A	sugar will eventually be exported transporter 7a	SUGAR TRANSPORTER SWEET7A		9	Q0J361.	 Biochemical character	Os09g0254600	LOC_Os09g08030.1		0		GO:0016021 - integral to membrane, GO:0008643 - carbohydrate transport, GO:0034219 - carbohydrate transmembrane transport, GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane		
9099	SWEET7B	OsSWEET7b, SWEET7b	SWEET7B	sugar will eventually be exported transporter 7b	SUGAR TRANSPORTER SWEET7B		9	Q0J349.	 Biochemical character	Os09g0258700	LOC_Os09g08440.1		0		GO:0005887 - integral to plasma membrane, GO:0008643 - carbohydrate transport, GO:0034219 - carbohydrate transmembrane transport, GO:0016021 - integral to membrane, GO:0051119 - sugar transmembrane transporter activity		
9100	SWEET7C	OsSWEET7c, SWEET7c	SWEET7C	sugar will eventually be exported transporter 7c	SUGAR TRANSPORTER SWEET7C		12	Q2QWX8. A2ZIM4. BGIOSGA037095 (indica).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0178500	LOC_Os12g07860.1		0		GO:0005887 - integral to plasma membrane, GO:0034219 - carbohydrate transmembrane transport, GO:0016021 - integral to membrane, GO:0008643 - carbohydrate transport, GO:0009414 - response to water deprivation, GO:0051119 - sugar transmembrane transporter activity	TO:0000276 - drought tolerance	
9101	SWEET7D	OsSWEET7d, SWEET7d	SWEET7D	sugar will eventually be exported transporter 7d	SUGAR TRANSPORTER SWEET7D		9		 Biochemical character	Os09g0259200	LOC_Os09g08490.1		0		GO:0051119 - sugar transmembrane transporter activity, GO:0005887 - integral to plasma membrane		
9102	SWEET7E	OsSWEET7e, SWEET7e	SWEET7E	sugar will eventually be exported transporter 7e	SUGAR TRANSPORTER SWEET7E		9	A3BWJ9.	 Biochemical character	Os09g0256650	LOC_Os09g08270.1		0		GO:0034219 - carbohydrate transmembrane transport, GO:0016021 - integral to membrane, GO:0005887 - integral to plasma membrane, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity	TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity	
9103	SWEET12	OsSWEET12	SWEET12	sugar will eventually be exported transporter 12	SUGAR TRANSPORTER SWEET12		3	Q10LI8.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0347500	LOC_Os03g22590.1		0		GO:0016021 - integral to membrane, GO:0005887 - integral to plasma membrane, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0034219 - carbohydrate transmembrane transport, GO:0008643 - carbohydrate transport, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0051119 - sugar transmembrane transporter activity	TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
9104	SWEET13	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25	SWEET13	Xanthomonas oryzae pv. oryzae resistance 25, Xanthomonas oryzae pv. oryzae resistance-25, Xanthomonas campestris pv. oryzae resistance-25, nodulin MtN3 family protein, nodulin/SWEET13, sugar will eventually be exported transporter 13	SUGAR TRANSPORTER SWEET13	xa25, ossweet13	12	Resistant to bacterial blight disease. The present study identified a new dominant gene, Xa25(t), for bacterial blight resistance in Minghui 63 (Chen et al. 2002). Q2QR07. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0476200	LOC_Os12g29220.1		0		GO:0005887 - integral to plasma membrane, GO:0002237 - response to molecule of bacterial origin, GO:0034219 - carbohydrate transmembrane transport, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0008643 - carbohydrate transport, GO:0009414 - response to water deprivation, GO:0051119 - sugar transmembrane transporter activity	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	
9105	XA41	OsSWEET14, SWEET14, Os11N3, Os-11N3, 11N3, Xa41(t), xa41, Os11N3/SWEET14, OsSWEET14/Os11N3	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 41	Xanthomonas oryzae pv. oryzae resistance 41, sugar will eventually be exported transporter 14	SUGAR TRANSPORTER SWEET14	xa41(t), xa41, sweet14-10, sweet14-11, sweet14-15, sweet14-32, sweet14-36, sweet14-37, sweet14-38, sweet14-39, sweet14-41, sweet14-42	11	Q2R3P9. a second member of the NODULIN3 (N3) gene family. Nodulin-3. GO:0071470. a major bacterial blight susceptibility S gene. The 18-bp deletion in the promoter region of the OsSWEET14 gene represents a new resistance allele xa41(t) (Hutin et al. 2015).  OsR498G1120210200.01 in Xie et al. 2022.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0508600	LOC_Os11g31190.1		0		GO:0009751 - response to salicylic acid stimulus, GO:0015770 - sucrose transport, GO:0009739 - response to gibberellin stimulus, GO:0051119 - sugar transmembrane transporter activity, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0071215 - cellular response to abscisic acid stimulus, GO:0010150 - leaf senescence, GO:0034219 - carbohydrate transmembrane transport, GO:0002237 - response to molecule of bacterial origin, GO:0005887 - integral to plasma membrane, GO:0008515 - sucrose transmembrane transporter activity	TO:0000175 - bacterial blight disease resistance, TO:0000421 - pollen fertility, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000455 - seed set percent	PO:0025034 - leaf , PO:0009015 - portion of vascular tissue , PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath 
9106	SWEET15	OsSWEET15	SWEET15	sugar will eventually be exported transporter 15	SUGAR TRANSPORTER SWEET15	ossweet15, ossweet15-1, ossweet15-2	2	Q6K602. TO:0020101: starch mobilization. GO:1904982: sucrose transmembrane transport.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Seed - Morphological traits - Endosperm	Os02g0513100	LOC_Os02g30910.1		0		GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009960 - endosperm development, GO:0010431 - seed maturation, GO:0009915 - phloem loading, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0008643 - carbohydrate transport, GO:0015757 - galactose transport, GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium, GO:0034219 - carbohydrate transmembrane transport	TO:0000696 - starch content, TO:0002661 - seed maturation, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000249 - leaf senescence, TO:0000575 - endosperm related trait	PO:0008007 - nucellar projection , PO:0020020 - nucellus , PO:0005360 - aleurone layer , PO:0001054 - 4 leaf senescence stage , PO:0007632 - seed maturation stage , PO:0008006 - nucellar epidermis 
9107	SWEET16	OsSWEET16	SWEET16	sugar will eventually be exported transporter 16	SUGAR TRANSPORTER SWEET16		3	Q10LN5.	 Biochemical character	Os03g0341300	LOC_Os03g22200.2, LOC_Os03g22200.1		0		GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0034219 - carbohydrate transmembrane transport, GO:0005887 - integral to plasma membrane, GO:0016021 - integral to membrane		
9108	YUCCA10	OsYUCCA10, OsYUC10	YUCCA-LIKE GENE 10				1	LOC_Os01g16750. an orthologue of AtYUCCA.	 Biochemical character	Os01g0274100	LOC_Os01g16750.1		0				
9109	YUCCA11	OsYUCCA11, OsYUC11, YUC11	YUCCA-LIKE GENE 11			osyuc11, osyuc11-1, osyuc11-2, osyuc11-3, osyuc11-4	12	an orthologue of AtYUCCA. TO:0020106: Indole-3-acetic acid content. PO:0030104: caryopsis fruit.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Biochemical character,  Seed - Morphological traits - Endosperm	Os12g0189500	LOC_Os12g08780.1		0		GO:0016036 - cellular response to phosphate starvation, GO:0010431 - seed maturation, GO:0042594 - response to starvation, GO:0009851 - auxin biosynthetic process, GO:0031667 - response to nutrient levels, GO:0009960 - endosperm development, GO:0048316 - seed development	TO:0000397 - grain size, TO:0000653 - seed development trait, TO:0000488 - seed composition based quality trait, TO:0000102 - phosphorus sensitivity, TO:0002653 - endosperm storage protein content, TO:0000696 - starch content, TO:0000490 - protein composition related trait, TO:0000602 - total fat content, TO:0002661 - seed maturation, TO:0000491 - fat and essential oil composition related trait, TO:0000266 - chalky endosperm, TO:0000391 - seed size, TO:0002672 - auxin content	PO:0001170 - seed development stage , PO:0009089 - endosperm , PO:0007633 - endosperm development stage , PO:0009009 - plant embryo , PO:0007632 - seed maturation stage , PO:0005360 - aleurone layer , PO:0006220 - central endosperm 
9110	YUCCA12	OsYUCCA12, OsYUC12, YUC12	YUCCA-LIKE GENE 12			osyuc12	2	an orthologue of AtYUCCA. PO:0030104: caryopsis fruit.	 Biochemical character,  Seed - Morphological traits - Endosperm	Os02g0272200	LOC_Os02g17230.1		0		GO:0050661 - NADP or NADPH binding, GO:0010342 - cellularization of endosperm, GO:0009960 - endosperm development, GO:0048316 - seed development, GO:0050660 - FAD binding, GO:0016491 - oxidoreductase activity	TO:0000653 - seed development trait	PO:0009009 - plant embryo , PO:0007633 - endosperm development stage , PO:0001170 - seed development stage , PO:0009089 - endosperm 
9111	YUCCA13	OsYUCCA13, OsYUC13	YUCCA-LIKE GENE 13				11	LOC_Os11g10140. an orthologue of AtYUCCA.	 Biochemical character	Os11g0207700	LOC_Os11g10140.1		0				
9112	YUCCA14	OsYUCCA14, OsYUC14	YUCCA-LIKE GENE 14				11	an orthologue of AtYUCCA. a gene in rice zygotes with paternal allele-dependent expression.	 Biochemical character	Os11g0207900	LOC_Os11g10170.1		0		GO:0004499 - flavin-containing monooxygenase activity, GO:0050661 - NADP or NADPH binding, GO:0050660 - FAD binding		
9113	SPO11-4	OsSPO11-4, OsSPO11D	TOPOISOMERASE 6 SUBUNIT A	sporulation protein11-4	TOPOISOMERASE 6 SUBUNIT A	Osspo11-4, spo11-4-9, spo11-4-10, spo11-4-15	12	GU177866(Japonica). AB219540.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os12g0622500	LOC_Os12g42760.1		0		GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity, GO:0003916 - DNA topoisomerase activity, GO:0005694 - chromosome, GO:0005524 - ATP binding, GO:0006265 - DNA topological change	TO:0000392 - sterility or fertility trait	
9114	SPO11-5	OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35	TOPOISOMERASE 6 SUBUNIT A-LIKE PROTEIN	ubiquitin-specific processing protease 13, Ubiquitin-specific protease 35	TOPOISOMERASE 6 SUBUNIT A		11	GU170364(Indica), AY154916/AY154917/AY154918/AY154919(Japonica). GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP35 in Ma et al. 2019.	 Biochemical character	Os11g0545300	LOC_Os11g34270.1		0		GO:0005694 - chromosome, GO:0016889 - endodeoxyribonuclease activity, producing 3'-phosphomonoesters, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0003677 - DNA binding, GO:0000737 - DNA catabolic process, endonucleolytic, GO:0016579 - protein deubiquitination		
9115	ZEP1	OsZEP1	TANSVERSE FILAMENT		SYNAPTONEMAL COMPLEX PROTEIN	zep1-1, zep1-2, zep1-3, zep1-4, zep1	4	GU479042, In the mutants of zep1, the SCs do not assemble normally, but COs are always formed between homologous chromosomes. a transverse filament protein of synaptonemal complex (SC).	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0452500	LOC_Os04g37960.1		0		GO:0000795 - synaptonemal complex, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination		
9116	RMC1	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3	RICE MEIOTIC CROSSOVER 1	ZMM protein, ROCK-N-ROLLERS	DNA HELICASE	Osmer3, mer3	2	FJ008126	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0617500	LOC_Os02g40450.1		0		GO:0008026 - ATP-dependent helicase activity, GO:0051026 - chiasma formation, GO:0005524 - ATP binding, GO:0007126 - meiosis, GO:0003676 - nucleic acid binding, GO:0007131 - reciprocal meiotic recombination		
9117	RPA1A	OsRPA70a, OsRPA1a, RPA1a	REPLICATION PROTEIN A 1A	Replication protein A 70kDa subunit a, RPA70kDa subunit a	REPLICATION PROTEIN A 1A	osrpa1a	2	AB042415, AU068958. Q6YZ49. GO:0061458: reproductive system development.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0776800	LOC_Os02g53680.1				GO:0009933 - meristem structural organization, GO:0010182 - sugar mediated signaling, GO:0043687 - post-translational protein modification, GO:0043247 - telomere maintenance in response to DNA damage, GO:0009560 - embryo sac egg cell differentiation, GO:0009555 - pollen development, GO:0006312 - mitotic recombination, GO:0042138 - meiotic DNA double-strand break formation, GO:0045132 - meiotic chromosome segregation, GO:0003677 - DNA binding, GO:0007062 - sister chromatid cohesion, GO:0000790 - nuclear chromatin, GO:0009793 - embryonic development ending in seed dormancy, GO:0032204 - regulation of telomere maintenance, GO:0009845 - seed germination, GO:0009909 - regulation of flower development, GO:0019915 - lipid storage, GO:0007131 - reciprocal meiotic recombination, GO:0010162 - seed dormancy, GO:0010228 - vegetative to reproductive phase transition, GO:0007141 - male meiosis I, GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0000724 - double-strand break repair via homologous recombination, GO:0009640 - photomorphogenesis, GO:0007140 - male meiosis, GO:0006260 - DNA replication, GO:0051026 - chiasma formation, GO:0010332 - response to gamma radiation, GO:0006281 - DNA repair, GO:0016444 - somatic cell DNA recombination, GO:0050826 - response to freezing, GO:0048232 - male gamete generation, GO:0046872 - metal ion binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0016567 - protein ubiquitination		
9118	RAD51A2	OsRad51A2, OsRAD51	DNA REPAIR PROTEIN RAD51A2 		DNA REPAIR PROTEIN RAD51A2 	rad51a2, Osrad51a2	12	AB080264(Japonica), DQ890514(Indica). GO:1904975: response to bleomycin. GO:0035825: homologous recombination. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os12g0497300	LOC_Os12g31370.1		0		GO:0051321 - meiotic cell cycle, GO:0006302 - double-strand break repair, GO:0005524 - ATP binding, GO:0008094 - DNA-dependent ATPase activity, GO:0010332 - response to gamma radiation, GO:0007129 - synapsis, GO:0009555 - pollen development, GO:0007131 - reciprocal meiotic recombination, GO:0006281 - DNA repair, GO:0007130 - synaptonemal complex assembly	TO:0000437 - male sterility, TO:0000161 - radiation response trait	PO:0009049 - inflorescence , PO:0001007 - pollen development stage 
9119	SDS	OsSDS, Orysa;SDS	SOLO DANCERS		N-TYPE CYCLIN	Ossds, Ossds-1, Ossds-2, Ossds-3	3	Q10PQ9. OsSDS is critical for the localization of OsMSH5, OsMER3 and OsZIP4 (Wu et al. 2015).	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0225200	LOC_Os03g12414.2, LOC_Os03g12414.1		0		GO:0005634 - nucleus, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0000706 - meiotic DNA double-strand break processing, GO:0007126 - meiosis, GO:0007049 - cell cycle		
9121	ORC1	OsORC1	ORIGIN RECOGNITION COMPLEX 1				6	AB037135 (Japonica). LOC_Os06g08790.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0187000	LOC_Os06g08790.1		0		GO:0045787 - positive regulation of cell cycle, GO:0010332 - response to gamma radiation		
9122	ORC2	OsORC2	ORIGIN RECOGNITION COMPLEX 2	Origin recognition complex subunit 2, ORC subunit 2			3	AB104466(Japonica). AF140487.	 Biochemical character	Os03g0184700	LOC_Os03g08640.1, LOC_Os03g08640.2		0		GO:0005664 - nuclear origin of replication recognition complex, GO:0006260 - DNA replication, GO:0000808 - origin recognition complex, GO:0003688 - DNA replication origin binding, GO:0045787 - positive regulation of cell cycle, GO:0005634 - nucleus, GO:0030466 - chromatin silencing at silent mating-type cassette, GO:0005656 - pre-replicative complex, GO:0006270 - DNA replication initiation, GO:0006267 - pre-replicative complex assembly		
9123	ORC3	OsORC3	ORIGIN RECOGNITION COMPLEX 3				10	AB100408 (Japonica). Q0IY07. LOC_Os10g26280.	 Biochemical character	Os10g0402200 	LOC_Os10g26280.1		0		GO:0000724 - double-strand break repair via homologous recombination, GO:0003677 - DNA binding, GO:0000911 - cytokinesis by cell plate formation, GO:0009744 - response to sucrose stimulus, GO:0005664 - nuclear origin of replication recognition complex, GO:0048527 - lateral root development, GO:0006261 - DNA-dependent DNA replication		
9124	ORC4	OsORC4	ORIGIN RECOGNITION COMPLEX 4	origin recognition complex subunit 4			1	AB110983(Japonica). Q5N8Q4. LOC_Os01g49010. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0683400	LOC_Os01g49010.1, LOC_Os01g49010.2		0		GO:0003688 - DNA replication origin binding, GO:0005524 - ATP binding, GO:0006270 - DNA replication initiation, GO:0009744 - response to sucrose stimulus, GO:0005664 - nuclear origin of replication recognition complex, GO:0007126 - meiosis		
9125	ORC5	OsORC5	ORIGIN RECOGNITION COMPLEX 5				3	AB099524(Japonica)	 Biochemical character	Os03g0759500	LOC_Os03g55200.1		0				
9126	SAUR1	OsSAUR1	SMALL AUXIN-UP RNA 1	Small auxin-up RNA 1	SAUR PROTEIN 1		1	Auxin-responsive SAUR gene family member.		Os01g0155100	LOC_Os01g06230.1		0		GO:0005516 - calmodulin binding, GO:0009734 - auxin mediated signaling pathway		
9127	SAUR2	OsSAUR2	SMALL AUXIN-UP RNA 2	Small auxin-up RNA 2	SAUR PROTEIN 2		1	Auxin-responsive SAUR gene family member. CF955968.		Os01g0768333	LOC_Os01g56240.1		0		GO:0009620 - response to fungus, GO:0009733 - response to auxin stimulus		
9128	SAUR3	OsSAUR3, OsSAUR72	SMALL AUXIN-UP RNA 3	Small auxin-up RNA 3	SAUR PROTEIN 3		1	Auxin-responsive SAUR gene family member. OsSAUR72 in Park et al. 2021. GO:1901370: response to glutathione.	 Tolerance and resistance - Stress tolerance	Os01g0924966	LOC_Os01g70050.1		0		GO:0009409 - response to cold	TO:0000303 - cold tolerance	
9129	SAUR4	OsSAUR4	SMALL AUXIN-UP RNA 4	Small auxin-up RNA 4	SAUR PROTEIN 4		2	Auxin-responsive SAUR gene family member. 		Os02g0143300	LOC_Os02g05050.1		0				
9130	SAUR5	OsSAUR5	SMALL AUXIN-UP RNA 5	Small auxin-up RNA 5	SAUR PROTEIN 5		2	Auxin-responsive SAUR gene family member. CA764032.		Os02g0143400	LOC_Os02g05060.1		0		GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
9131	SAUR6	OsSAUR6	SMALL AUXIN-UP RNA 6	Small auxin-up RNA 6	SAUR PROTEIN 6		2	Auxin-responsive SAUR gene family member. CB649992.	 Seed - Physiological traits - Dormancy	Os02g0167600	LOC_Os02g07110.1		0		GO:0016020 - membrane, GO:0010162 - seed dormancy, GO:0009734 - auxin mediated signaling pathway	TO:0000253 - seed dormancy	PO:0007632 - seed maturation stage , PO:0009009 - plant embryo 
9132	SAUR7	OsSAUR7	SMALL AUXIN-UP RNA 7	Small auxin-up RNA 7	SAUR PROTEIN 7		2	Auxin-responsive SAUR gene family member. Os02g0306200 (in Rap2 (build4)). GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance	Os02g0305950	LOC_Os02g20320.1	GR:0020089	0		GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus	TO:0006001 - salt tolerance	
9133	SAUR8	OsSAUR8	SMALL AUXIN-UP RNA 8	Small auxin-up RNA 8	SAUR PROTEIN 8		2	LOC_Os02g24700. Auxin-responsive SAUR gene family member. AU33213.	 Tolerance and resistance - Stress tolerance	Os02g0445100	LOC_Os02g24700.1		0		GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
9134	SAUR9	OsSAUR9, SAUR50	SMALL AUXIN-UP RNA 9	Small auxin-up RNA 9	SAUR PROTEIN 9		2	Auxin-responsive SAUR gene family member. CA759440. SAUR50 in Zhang et al. 2020.	 Tolerance and resistance - Stress tolerance	Os02g0445600	LOC_Os02g24740.1		0		GO:0009415 - response to water	TO:0000237 - water stress trait	
9135	SAUR10	OsSAUR10	SMALL AUXIN-UP RNA 10	Small auxin-up RNA 10	SAUR PROTEIN 10		2	Auxin-responsive SAUR gene family member. AU184046, AU101615. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance	Os02g0512000	LOC_Os02g30810.1		0		GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
9136	SAUR11	OsSAUR11	SMALL AUXIN-UP RNA 11	Small auxin-up RNA 11	SAUR PROTEIN 11	saur11	2	Auxin-responsive SAUR gene family member. CA758724, CF962956, CX115060, CF987505, AU070771, AU083499, CF991337, CK037178. SAUR36 in Wang et al. 2021. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. TO:0001058: root system depth.	 Vegetative organ - Root,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os02g0643800	LOC_Os02g42990.1		0		GO:0009739 - response to gibberellin stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0080006 - internode patterning	TO:0002662 - leaf rolling tolerance, TO:0000544 - mesocotyl length, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000519 - rooting depth	PO:0009005 - root 
9137	SAUR12	OsSAUR12	SMALL AUXIN-UP RNA 12	Small auxin-up RNA 12	SAUR PROTEIN 12		2	Auxin-responsive SAUR gene family member. CB668237.	 Seed - Physiological traits - Dormancy	Os02g0769100 	LOC_Os02g52990.1	GR:0020094	0		GO:0010162 - seed dormancy, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway	TO:0000253 - seed dormancy	PO:0009009 - plant embryo , PO:0007632 - seed maturation stage 
9138	SAUR13	OsSAUR13	SMALL AUXIN-UP RNA 13	Small auxin-up RNA 13	SAUR PROTEIN 13		3	Auxin-responsive SAUR gene family member. 		Os03g0290100	LOC_Os03g18050.1		0				
9139	SAUR14	OsSAUR14	SMALL AUXIN-UP RNA 14	Small auxin-up RNA 14	SAUR PROTEIN 14		3	Auxin-responsive SAUR gene family member. 		Os03g0660200	LOC_Os03g45800.1		0				
9140	SAUR15	OsSAUR15	SMALL AUXIN-UP RNA 15	Small auxin-up RNA 15	SAUR PROTEIN 15		3	Auxin-responsive SAUR gene family member. 		Os03g0660300	LOC_Os03g45830.1		0				
9141	SAUR16	OsSAUR16	SMALL AUXIN-UP RNA 16	Small auxin-up RNA 16	SAUR PROTEIN 16		3	Auxin-responsive SAUR gene family member.		Os03g0660400	LOC_Os03g45850.1		0				
9142	SAUR17	OsSAUR17	SMALL AUXIN-UP RNA 17	Small auxin-up RNA 17	SAUR PROTEIN 17		3	Auxin-responsive SAUR gene family member. 		Os03g0660500	LOC_Os03g45860.1		0				
9143	SAUR18	OsSAUR18	SMALL AUXIN-UP RNA 18	Small auxin-up RNA 18	SAUR PROTEIN 18		4	Auxin-responsive SAUR gene family member. 		Os04g0517900 	LOC_Os04g43740.1		0				
9144	SAUR19	OsSAUR19	SMALL AUXIN-UP RNA 19	Small auxin-up RNA 19	SAUR PROTEIN 19		4	LOC_Os04g45370. Auxin-responsive SAUR gene family member. CF992080, AU163467, AU070854.	 Tolerance and resistance - Stress tolerance	Os04g0537100	LOC_Os04g45370.1		0		GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
9145	SAUR20	OsSAUR20	SMALL AUXIN-UP RNA 20	Small auxin-up RNA 20	SAUR PROTEIN 20		4	Auxin-responsive SAUR gene family member. 		Os04g0608300	LOC_Os04g51890.1		0				
9146	SAUR21	OsSAUR21	SMALL AUXIN-UP RNA 21	Small auxin-up RNA 21	SAUR PROTEIN 21		4	Auxin-responsive SAUR gene family member. CX116178, AU101241, AU101242, AU164440, AU164434.		Os04g0617050	LOC_Os04g52670.1		0				
9147	SAUR22	OsSAUR22	SMALL AUXIN-UP RNA 22	Small auxin-up RNA 22	SAUR PROTEIN 22		4	Auxin-responsive SAUR gene family member. 		Os04g0662200	LOC_Os04g56680.1		0				
9148	SAUR23	OsSAUR23	SMALL AUXIN-UP RNA 23	Small auxin-up RNA 23	SAUR PROTEIN 23		4	Auxin-responsive SAUR gene family member.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os04g0662400	LOC_Os04g56690.1		0		GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0010162 - seed dormancy, GO:0009629 - response to gravity	TO:0000253 - seed dormancy, TO:0002693 - gravity response trait	PO:0009009 - plant embryo , PO:0007632 - seed maturation stage 
9149	SAUR24	OsSAUR24	SMALL AUXIN-UP RNA 24	Small auxin-up RNA 24	SAUR PROTEIN 24		6	Auxin-responsive SAUR gene family member. CX111504, CB678751.		Os06g0137400	LOC_Os06g04590.1		0				
9150	SAUR25	OsSAUR25	SMALL AUXIN-UP RNA 25	Small auxin-up RNA 25	SAUR PROTEIN 25		6	Auxin-responsive SAUR gene family member. CB649992, CB649993.	 Seed - Physiological traits - Dormancy	Os06g0671150	LOC_Os06g45950.1		0		GO:0010162 - seed dormancy, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway	TO:0000253 - seed dormancy	PO:0009009 - plant embryo , PO:0007632 - seed maturation stage 
9151	SAUR26	OsSAUR26	SMALL AUXIN-UP RNA 26	Small auxin-up RNA 26	SAUR PROTEIN 26		6	Auxin-responsive SAUR gene family member. 		Os06g0671600	LOC_Os06g45970.1		0				
9152	SAUR27	OsSAUR27	SMALL AUXIN-UP RNA 27	Small auxin-up RNA 27, AUXIN-INDUCED PROTEIN 10A5	SAUR PROTEIN 27		6	Auxin-responsive SAUR gene family member. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance	Os06g0701900	LOC_Os06g48850.1		0		GO:0009651 - response to salt stress, GO:0009415 - response to water	TO:0006001 - salt tolerance, TO:0000237 - water stress trait	
9153	SAUR28	OsSAUR28	SMALL AUXIN-UP RNA 28	Small auxin-up RNA 28	SAUR PROTEIN 28		6	Auxin-responsive SAUR gene family member. 		Os06g0702000	LOC_Os06g48860.1		0				
9154	SAUR29	OsSAUR29	SMALL AUXIN-UP RNA 29	Small auxin-up RNA 29	SAUR PROTEIN 29		6	Auxin-responsive SAUR gene family member. AU070300, AU070299. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance	Os06g0714300	LOC_Os06g50040.1		0		GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
9155	SAUR30	OsSAUR30	SMALL AUXIN-UP RNA 30	Small auxin-up RNA 30	SAUR PROTEIN 30		7	Auxin-responsive SAUR gene family member. 		Os07g0475700	LOC_Os07g29310.1		0				
9156	SAUR31	OsSAUR31	SMALL AUXIN-UP RNA 31	Small auxin-up RNA 31	SAUR PROTEIN 31		8	Auxin-responsive SAUR gene family member. AU083558, D48386.		Os08g0118500	LOC_Os08g02520.1		0				
9157	SAUR32	OsSAUR32	SMALL AUXIN-UP RNA 32	Small auxin-up RNA 32	SAUR PROTEIN 32		8	Auxin-responsive SAUR gene family member.  OsSAUR32 might be the candidate gene for qSSD8 (QTL for seed-set density on chromosome 8) (Wang et al. 2021).	 Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity	Os08g0118800	LOC_Os08g02530.1		0		GO:0009733 - response to auxin stimulus	TO:0000565 - spikelets per panicle length, TO:0000163 - auxin sensitivity	
9158	SAUR33	OsSAUR33	SMALL AUXIN-UP RNA 33	Small auxin-up RNA 33	SAUR PROTEIN 33	ossaur33, ossaur33-1, ossaur33-2	8	Auxin-responsive SAUR gene family member. CX102113, CK008354, CF993077, D41303, AA752879, CK009417, CF960474.	 Seed - Physiological traits - Storage substances,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits,  Tolerance and resistance - Stress tolerance	Os08g0452500	LOC_Os08g35110.1		0		GO:0010182 - sugar mediated signaling, GO:0009733 - response to auxin stimulus, GO:0009408 - response to heat, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0005886 - plasma membrane	TO:0000300 - glucose content, TO:0000333 - sugar content, TO:0000163 - auxin sensitivity, TO:0000340 - total soluble sugar content, TO:0000259 - heat tolerance, TO:0000430 - germination rate	PO:0020142 - stem internode , PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage , PO:0009010 - seed , PO:0009005 - root 
9159	SAUR34	OsSAUR34	SMALL AUXIN-UP RNA 34	Small auxin-up RNA 34	SAUR PROTEIN 34		8	Auxin-responsive SAUR gene family member. LOC_Os08g42198.		Os08g0534950 	LOC_Os08g42198.1		0				
9160	SAUR35	OsSAUR35	SMALL AUXIN-UP RNA 35	Small auxin-up RNA 35	SAUR PROTEIN 35		8	Auxin-responsive SAUR gene family member. AU162587. LOC_Os08g42277.		Os08g0534300			0				
9161	SAUR36	OsSAUR36	SMALL AUXIN-UP RNA 36	Small auxin-up RNA 36	SAUR PROTEIN 36		8	Auxin-responsive SAUR gene family member. CX114771.		Os08g0550700	LOC_Os08g43700.1		0				
9162	SAUR37	OsSAUR37, SAUR76, OsSAUR76	SMALL AUXIN-UP RNA 37	Small auxin-up RNA 37	SAUR PROTEIN 37		9	Auxin-responsive SAUR gene family member. CK057681, CK009831. SAUR76 in Wu et al. 2024.	 Tolerance and resistance - Stress tolerance	Os09g0437100 	LOC_Os09g26590.1		0		GO:0010269 - response to selenium ion	TO:0000032 - selenium sensitivity	
9163	SAUR38	OsSAUR38, OsSAURq9, SAURq9	SMALL AUXIN-UP RNA 38	Small auxin-up RNA 38	SAUR PROTEIN 38		9	Auxin-responsive SAUR gene family member. 	 Vegetative organ - Culm	Os09g0437400	LOC_Os09g26610.1		0		GO:0009733 - response to auxin stimulus	TO:0000567 - tiller angle	
9164	SAUR39	OsSAUR39	SMALL AUXIN-UP RNA 39	Small auxin-up RNA 39	SAUR PROTEIN 39		9	Auxin-responsive SAUR gene family member. an early auxin response gene. CF298825, CF313445, CF319833, CF318268, CK076098, CB667154, CK075864, CB667155, CF319834, CF300374, CF300373. B7F8P5. GO:2000012: regulation of auxin polar transport.	 Tolerance and resistance - Stress tolerance	Os09g0545300	LOC_Os09g37330.1		0		GO:0046621 - negative regulation of organ growth, GO:0009734 - auxin mediated signaling pathway, GO:0007275 - multicellular organismal development, GO:0005737 - cytoplasm, GO:0009415 - response to water	TO:0000237 - water stress trait, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity	
9165	SAUR40	OsSAUR40	SMALL AUXIN-UP RNA 40	Small auxin-up RNA 40	SAUR PROTEIN 40		9	Auxin-responsive SAUR gene family member. CA755157.		Os09g0545400 	LOC_Os09g37344.1		0				
9166	SAUR41	OsSAUR41	SMALL AUXIN-UP RNA 41	Small auxin-up RNA 41	SAUR PROTEIN 41		9	Auxin-responsive SAUR gene family member.  		Os09g0545700	LOC_Os09g37369.1		0				
9167	SAUR42	OsSAUR42	SMALL AUXIN-UP RNA 42	Small auxin-up RNA 42	SAUR PROTEIN 42		9	Auxin-responsive SAUR gene family member. LOC_Os09g37380. Os09g0545900(obsolete in IRGSP1).					0				
9168	SAUR43	OsSAUR43	SMALL AUXIN-UP RNA 43	Small auxin-up RNA 43	SAUR PROTEIN 43		9	Auxin-responsive SAUR gene family member. OSJNBa0038K02.5, pseudogene.					0				
9169	SAUR44	OsSAUR44	SMALL AUXIN-UP RNA 44	Small auxin-up RNA 44	SAUR PROTEIN 44		9	Auxin-responsive SAUR gene family member. CA759673. LOC_Os09g37394. Os09g0546000 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os09g37394		0				
9170	SAUR45	OsSAUR45	SMALL AUXIN-UP RNA 45	Small auxin-up RNA 45	SAUR PROTEIN 45		9	Auxin-responsive SAUR gene family member. D41140. GO:0060918: auxin transport. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os09g0546100	LOC_Os09g37400.1		0		GO:0005737 - cytoplasm, GO:0009734 - auxin mediated signaling pathway, GO:0009736 - cytokinin mediated signaling, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0048367 - shoot development, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0080022 - primary root development, GO:0048366 - leaf development, GO:0009926 - auxin polar transport, GO:0009851 - auxin biosynthetic process	TO:0000227 - root length, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000207 - plant height, TO:0001006 - adventitious root number, TO:0000615 - abscisic acid sensitivity, TO:0000370 - leaf width, TO:0000180 - spikelet fertility, TO:0000167 - cytokinin sensitivity, TO:0000654 - shoot development trait, TO:0000656 - root development trait, TO:0000576 - stem length, TO:0006036 - stem elongation, TO:0000655 - leaf development trait	PO:0001052 - 2 leaf expansion stage , PO:0001031 - 4 root elongation stage , PO:0007089 - stem elongation stage 
9171	SAUR46	OsSAUR46, SAUR36, OsSAUR36	SMALL AUXIN-UP RNA 46	Small auxin-up RNA 46	SAUR PROTEIN 46		9	Auxin-responsive SAUR gene family member. CB096280. SAUR36 in Wu et al. 2024.	 Tolerance and resistance - Stress tolerance	Os09g0546200	LOC_Os09g37410.1		0		GO:0010269 - response to selenium ion	TO:0000032 - selenium sensitivity	
9172	SAUR47	OsSAUR47	SMALL AUXIN-UP RNA 47	Small auxin-up RNA 47	SAUR PROTEIN 47		9	Auxin-responsive SAUR gene family member. CK059911. OSJNBa0038K02.9 pseudogene.					0				
9173	SAUR48	OsSAUR48	SMALL AUXIN-UP RNA 48	Small auxin-up RNA 48	SAUR PROTEIN 48		9	Auxin-responsive SAUR gene family member. LOC_Os09g37430. Os09g0546300 (in Rap1 (build3), Rap2 (build4)). 			LOC_Os09g37430		0				
9174	SAUR49	OsSAUR49	SMALL AUXIN-UP RNA 49	Small auxin-up RNA 49	SAUR PROTEIN 49		9	Auxin-responsive SAUR gene family member. BX899832. LOC_Os09g37440.Os09g0546500 (in Rap1 (build3), Rap2 (build4)).			LOC_Os09g37440		0				
9175	SAUR50	OsSAUR50	SMALL AUXIN-UP RNA 50	Small auxin-up RNA 50	SAUR PROTEIN 50		9	Auxin-responsive SAUR gene family member. OSJNBa0038K02.12, pseudogene.					0				
9176	SAUR51	OsSAUR51	SMALL AUXIN-UP RNA 51	Small auxin-up RNA 51	SAUR PROTEIN 51		9	Auxin-responsive SAUR gene family member. CX111160.		Os09g0546700	LOC_Os09g37460.1		0				
9177	SAUR52	OsSAUR52	SMALL AUXIN-UP RNA 52	Small auxin-up RNA 52	SAUR PROTEIN 52		9	Auxin-responsive SAUR gene family member. CX108618. Os09g0546800 in RAP2 and RAP3 (build4 and build5). LOC_Os09g37470.			LOC_Os09g37470	GR:0020134	0				
9178	SAUR53	OsSAUR53	SMALL AUXIN-UP RNA 53	Small auxin-up RNA 53	SAUR PROTEIN 53		9	Auxin-responsive SAUR gene family member. C25314, AU172957.		Os09g0546900	LOC_Os09g37480.1		0				
9179	SAUR54	OsSAUR54	SMALL AUXIN-UP RNA 54	Small auxin-up RNA 54	SAUR PROTEIN 54		9	Auxin-responsive SAUR gene family member. CA762058.		Os09g0547000	LOC_Os09g37490.1		0				
9180	SAUR55	OsSAUR55	SMALL AUXIN-UP RNA 55	Small auxin-up RNA 55	SAUR PROTEIN 55		9	Auxin-responsive SAUR gene family member. CV725163.		Os09g0547100	LOC_Os09g37500.1		0				
9181	SAUR56	OsSAUR56	SMALL AUXIN-UP RNA 56	Small auxin-up RNA 56	SAUR PROTEIN 56		10	Auxin-responsive SAUR gene family member. CX103416.		Os10g0510500	LOC_Os10g36703.1		0				
9182	SAUR57	OsSAUR57	SMALL AUXIN-UP RNA 57	Small auxin-up RNA 57	SAUR PROTEIN 57		12	Auxin-responsive SAUR gene family member. CF965411, AU164662, D49128.	 Tolerance and resistance - Stress tolerance	Os12g0609600	LOC_Os12g41600.1, LOC_Os12g41600.2		0		GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
9183	SAUR58	OsSAUR58	SMALL AUXIN-UP RNA 58	Small auxin-up RNA 58	SAUR PROTEIN 58		12	Auxin-responsive SAUR gene family member. BE230777.		Os12g0626200	LOC_Os12g43110.1		0				
9184	MLO_	OsMLO4, OsMLO1, MLO1	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O1, powdery-MiLdew-resistance gene O4, Mildew resistance Locus O-1	POWDERY-MILDEW-RESISTANCE PROTEIN O_		10	AC073166. OsMLO1 in Nguyen et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0541000	LOC_Os10g39520.1		0		GO:0009409 - response to cold, GO:0008219 - cell death, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0009416 - response to light stimulus	TO:0000074 - blast disease, TO:0000075 - light sensitivity, TO:0000303 - cold tolerance	PO:0009066 - anther , PO:0025034 - leaf 
9185	MLO_	OsMLO5, OsMLO2	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O5, powdery-MiLdew-resistance gene O2, Mildew resistance Locus O-2	POWDERY-MILDEW-RESISTANCE PROTEIN O_		1	AP003346. OsMLO2 in Nguyen et al. 2016.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0888600	LOC_Os01g66510.1		0		GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0008219 - cell death, GO:0016021 - integral to membrane	TO:0000074 - blast disease, TO:0000259 - heat tolerance	PO:0009046 - flower 
9186	MLO_	OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O2, powdery-MiLdew-resistance gene O3, MLO homologue, Mildew resistance Locus O-3	POWDERY-MILDEW-RESISTANCE PROTEIN O_		3	AC099739, AP000615, AF384030. AF388195. OsMLO3 in Nguyen et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0129100	LOC_Os03g03700.1, LOC_Os03g03700.2		0		GO:0006952 - defense response, GO:0008219 - cell death, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009646 - response to absence of light, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane	TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000075 - light sensitivity, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0025034 - leaf 
9187	MLO_	OsMLO4, MLO4	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O4, Mildew resistance Locus O-4	POWDERY-MILDEW-RESISTANCE PROTEIN O_		4	AL606456.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0680800	LOC_Os04g58420.1		0		GO:0016021 - integral to membrane, GO:0009408 - response to heat, GO:0008219 - cell death, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0000025 - root tip 
9188	MLO_	OsMLO5, MLO5	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O5, Mildew resistance Locus O-5	POWDERY-MILDEW-RESISTANCE PROTEIN O_		4	AL731606.	 Tolerance and resistance - Disease resistance	Os04g0444400	LOC_Os04g36680.1		0		GO:0016021 - integral to membrane, GO:0008219 - cell death		
9189	MLO_	OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O6, powdery-MiLdew-resistance gene O1, Mildew resistance Locus O-6	POWDERY-MILDEW-RESISTANCE PROTEIN O_		6	AP003518, Z95353, AF490386. Q0DC45, A2YD22. OsMLO6 in Nguyen et al. 2016.	 Tolerance and resistance - Disease resistance	Os06g0486300	LOC_Os06g29110.1		0		GO:0008219 - cell death, GO:0006952 - defense response, GO:0005516 - calmodulin binding, GO:0009607 - response to biotic stimulus, GO:0016021 - integral to membrane	TO:0000074 - blast disease	PO:0009066 - anther 
9190	MLO_	OsMLO7, MLO7	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O7, Mildew resistance Locus O-7	POWDERY-MILDEW-RESISTANCE PROTEIN O_		6	AP003616.	 Tolerance and resistance - Disease resistance	Os06g0610500	LOC_Os06g40790.1		0		GO:0016021 - integral to membrane, GO:0008219 - cell death		
9191	MLO_	OsMLO8, MLO8	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O8, Mildew resistance Locus O-8	POWDERY-MILDEW-RESISTANCE PROTEIN O_		2	AP004191.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0197200	LOC_Os02g10350.1		0		GO:0008219 - cell death, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity, TO:0000074 - blast disease	PO:0009066 - anther , PO:0025281 - pollen , PO:0025034 - leaf 
9192	MLO_	OsMLO9, MLO9	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O9, Mildew resistance Locus O-9	POWDERY-MILDEW-RESISTANCE PROTEIN O_		5	AC134933.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0418100	LOC_Os05g34550.1, LOC_Os05g34550.2, LOC_Os05g34550.3		0		GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0008219 - cell death, GO:0016021 - integral to membrane	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0009066 - anther 
9193	MLO_	OsMLO10, MLO10	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O10, Mildew resistance Locus O-10	POWDERY-MILDEW-RESISTANCE PROTEIN O_		2	AP004144.	 Tolerance and resistance - Disease resistance	Os02g0562600	LOC_Os02g35490.1		0		GO:0016021 - integral to membrane, GO:0008219 - cell death		PO:0009005 - root 
9194	MLO_	OsMLO11, MLO11	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O11, Mildew resistance Locus O-11	POWDERY-MILDEW-RESISTANCE PROTEIN O_		11	AC135794.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0181400	LOC_Os11g07912.1		0		GO:0050832 - defense response to fungus, GO:0008219 - cell death, GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0009066 - anther , PO:0009046 - flower 
9195	MLO_	OsMLO12, MLO12	POWDERY-MILDEW-RESISTANCE GENE O_	powdery-MiLdew-resistance gene O12, Mildew resistance Locus O-12	POWDERY-MILDEW-RESISTANCE PROTEIN O_		5	AC135431.	 Tolerance and resistance - Disease resistance	Os05g0183300 	LOC_Os05g09050.1		0		GO:0008219 - cell death, GO:0016021 - integral to membrane		PO:0025281 - pollen , PO:0009066 - anther 
9196	ORC6	OsORC6	ORIGIN RECOGNITION COMPLEX 6				7		 Biochemical character	Os07g0628600	LOC_Os07g43540.1		0				
9197	MCM7	OsMCM7	MINI-CHROMOSOME MAINTENANCE PROTEIN 7		MINI-CHROMOSOME MAINTENANCE PROTEIN 7		12	LOC_Os12g37400, Replicative helicase.	 Biochemical character	Os12g0560700	LOC_Os12g37400.1, LOC_Os12g37400.2		0				
9198	MCM6	OsMCM6	MINI-CHROMOSOME MAINTENANCE PROTEIN 6		MINI-CHROMOSOME MAINTENANCE PROTEIN 6		5	LOC_Os05g14590. Replicative helicase.	 Biochemical character	Os05g0235800	LOC_Os05g14590.1		0				
9199	MCM5	OsMCM5	MINI-CHROMOSOME MAINTENANCE PROTEIN 5		MINI-CHROMOSOME MAINTENANCE PROTEIN 5		2	Q6KAJ4. Replicative helicase.	 Biochemical character	Os02g0797400	LOC_Os02g55410.2, LOC_Os02g55410.1		0		GO:0042555 - MCM complex, GO:0005737 - cytoplasm, GO:0006270 - DNA replication initiation, GO:0007049 - cell cycle, GO:0003688 - DNA replication origin binding, GO:0000347 - THO complex, GO:0003678 - DNA helicase activity, GO:0005524 - ATP binding, GO:0003682 - chromatin binding		
9200	MCM4	OsMCM4	MINI-CHROMOSOME MAINTENANCE PROTEIN 4		MINI-CHROMOSOME MAINTENANCE PROTEIN 4		1	Q5JKB0. Replicative helicase.	 Biochemical character	Os01g0544450	LOC_Os01g36390.1		0		GO:0005524 - ATP binding, GO:0042555 - MCM complex, GO:0000347 - THO complex, GO:0006270 - DNA replication initiation, GO:0007049 - cell cycle, GO:0046872 - metal ion binding, GO:0003678 - DNA helicase activity, GO:0003677 - DNA binding, GO:0005829 - cytosol		
9201	MCM3	OsMCM3	MINI-CHROMOSOME MAINTENANCE PROTEIN 3		MINI-CHROMOSOME MAINTENANCE PROTEIN 3		5	Replicative helicase. Q0DHC4. GO:1902975: mitotic DNA replication initiation.	 Biochemical character	Os05g0476200	LOC_Os05g39850.1		0		GO:0000727 - double-strand break repair via break-induced replication, GO:0005634 - nucleus, GO:0003688 - DNA replication origin binding, GO:0003697 - single-stranded DNA binding, GO:0006267 - pre-replicative complex assembly, GO:0003678 - DNA helicase activity, GO:0042555 - MCM complex, GO:0005524 - ATP binding, GO:0006271 - DNA strand elongation during DNA replication		
9202	MCM2	OsMCM2	MINI-CHROMOSOME MAINTENANCE PROTEIN 2		MINI-CHROMOSOME MAINTENANCE PROTEIN 2		11	Replicative helicase. Q2R482. GO:1902975: mitotic DNA replication initiation. GO:1905775: negative regulation of DNA helicase activity.	 Biochemical character	Os11g0484300	LOC_Os11g29380.1		0		GO:0000347 - THO complex, GO:0003688 - DNA replication origin binding, GO:0042127 - regulation of cell proliferation, GO:0046872 - metal ion binding, GO:0003697 - single-stranded DNA binding, GO:0042555 - MCM complex, GO:0005829 - cytosol, GO:0010082 - regulation of root meristem growth, GO:0006267 - pre-replicative complex assembly, GO:0009793 - embryonic development ending in seed dormancy, GO:0005634 - nucleus, GO:0000727 - double-strand break repair via break-induced replication, GO:0006268 - DNA unwinding during replication, GO:0005524 - ATP binding, GO:0003678 - DNA helicase activity		
9203	CDC6	OsCDC6	CELL DIVISION CONTROL 6				1	LOC_Os01g63710. Q5N897.	 Biochemical character	Os01g0856000	LOC_Os01g63710.1, LOC_Os01g63710.2, LOC_Os01g63710.3		0		GO:0051301 - cell division, GO:0003688 - DNA replication origin binding, GO:0006270 - DNA replication initiation, GO:0000278 - mitotic cell cycle, GO:0033314 - mitotic cell cycle DNA replication checkpoint, GO:0005634 - nucleus		
9204	CDC45-1	CDC45, OsCDC45, CDC45A	CELL DIVISION  CONTROL 45-1		CELL DIVISION  CONTROL 45-1		12	LOC_Os12g03130. DNA replication initiation protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0124700	LOC_Os12g03130.1		0		GO:0007126 - meiosis, GO:0006270 - DNA replication initiation		
9205	CDC45-2	OsCDC45, CDC45	CELL DIVISION  CONTROL 45-2		CELL DIVISION  CONTROL 45-2		11	LOC_Os11g03430	 Biochemical character	Os11g0128400	LOC_Os11g03430.1		0				
9206	WRKY107	OsWRKY107	WRKY GENE 107		TRANSCRIPTION FACTOR WRKY		1	AU071032, AU091465, AU065466, AU082723. WRKY63 in Qiu et al. 2004. WRKY26 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY2 in Wu et al. (2005). WRKY97 (WRKY-97) in Ross et al. (2007) and Yang et al. 2016. WRKY101 and WRKY107 in Choi et al. 2017. a gene in rice zygotes with paternal allele-dependent expression.	 Tolerance and resistance - Disease resistance	Os01g0185900	LOC_Os01g09080.1		0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9207	WRKY116	OsWRKY116	WRKY GENE 116		TRANSCRIPTION FACTOR WRKY		1	WRKY105 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY18 in Wu et al. (2005), Ross et al. (2007) and Sun et al. 2014. LOC_Os01g60520.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0820700	LOC_Os01g60520.1		0		GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response	TO:0006001 - salt tolerance	
9208	WRKY108	OsWRKY108	WRKY GENE 108		TRANSCRIPTION FACTOR WRKY	oswrky108	1	BF889473. WRKY41 in Zhang and Wang (2005) and Berri et al. (2009). WRKY20 in Wu et al. (2005) and Sun et al. 2014. WRKY86 in Ross et al. (2007). WRKY98 and WRKY108 in Choi et al. 2017. TO:0020102: phosphate content. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0821300	LOC_Os01g60600.1		0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
9209	WRKY119	OsWRKY119	WRKY GENE 119		TRANSCRIPTION FACTOR WRKY		1	WRKY23 in Wu et al. (2005). Os01g0842700 (in Rap3 (build5)).	 Tolerance and resistance - Disease resistance		LOC_Os01g62510		0		GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9210	WRKY79	OsWRKY79, WRKY-79	WRKY GENE 79		TRANSCRIPTION FACTOR WRKY		3	WRKY19 in Zhang and Want (2005) and Berri et al. (2009). WRKY32 in Wu et al. (2005) and Sun et al. 2014. WRKY44 in Ross et al. (2007). 	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0335200	LOC_Os03g21710.1		0		GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0002213 - defense response to insect, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000205 - white-backed planthopper resistance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
9212	WRKY80	OsWRKY80	WRKY GENE 80		TRANSCRIPTION FACTOR WRKY		3	WRKY81 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY30 in Wu et al. (2005). WRKY88 in Ross et al. (2007). GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os03g0855100	LOC_Os03g63810.1		0		GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000205 - white-backed planthopper resistance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	
9213	WRKY109	OsWRKY109	WRKY GENE 109		TRANSCRIPTION FACTOR WRKY		5	LOC_Os05g03900. WRKY52 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY45 in Wu et al. (2005) in Sun et al. 2014. WRKY89 in Ross et al. (2007), Teng et al. 2022. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0129800	LOC_Os05g03900.1, LOC_Os05g03900.2		0		GO:0009414 - response to water deprivation, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
9214	WRKY82	OsWRKY82	WRKY GENE 82		TRANSCRIPTION FACTOR WRKY 82		5	LOC_Os05g14370. WRKY45 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY48 in Wu et al.(2005) and Sun et al. 2014. WRKY90 in Ross et al. (2007). 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0233100	LOC_Os05g14370.1		0		GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
9215	WRKY84	OsWRKY84	WRKY GENE 84		TRANSCRIPTION FACTOR WRKY		5	LOC_Os05g40070. WRKY94 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY54 in Wu et al. (2005). WRKY91 in Ross et al. (2007).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os05g0478700	LOC_Os05g40070.1		0		GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009725 - response to hormone stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000188 - drought sensitivity, TO:0000205 - white-backed planthopper resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000175 - bacterial blight disease resistance	
9216	WRKY83	OsWRKY83	WRKY GENE 83		TRANSCRIPTION FACTOR WRKY 83		5	LOC_Os05g50680.	 Tolerance and resistance - Disease resistance	Os05g0583600	LOC_Os05g50680.1		0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9217	WRKY111	OsWRKY111	WRKY GENE 111		TRANSCRIPTION FACTOR WRKY		5	WRKY60 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY62 in Wu et al. (2005) and Sun et al. 2014. WRKY92 in Ross et al. (2007). LOC_Os05g50700. Os05g0584000 (in Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance		LOC_Os05g50700		0		GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
9218	WRKY113	OsWRKY113	WRKY GENE 113		TRANSCRIPTION FACTOR WRKY	oswrky93, oswrky93-1	6	WRKY64 in Zhang and Wang (2005), Wu et al. (2005), Berri et al. (2009) and Sun et al. 2014. WRKY93 in Ross et al. (2007), Li et al. 2021. WRKY85 and WRKY113 in Choi et al 2017. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0158100	LOC_Os06g06360.1		0		GO:0003700 - transcription factor activity, GO:0002237 - response to molecule of bacterial origin, GO:0001666 - response to hypoxia, GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0010039 - response to iron ion, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0010150 - leaf senescence, GO:0007568 - aging	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000015 - oxygen sensitivity, TO:0000224 - iron sensitivity, TO:0000249 - leaf senescence, TO:0006001 - salt tolerance	PO:0001054 - 4 leaf senescence stage 
9219	WRKY123	OsWRKY123, DLN183, OsDLN183	WRKY GENE 123	DLN repressor 183, DLN motif protein 183	TRANSCRIPTION FACTOR WRKY		7	WRKY71 in Wu et al. (2005). WRKY94 in Ross et al. (2007). RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Tolerance and resistance - Disease resistance	Os07g0273700	LOC_Os07g17230.1		0		GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9220	WRKY115	OsWRKY115	WRKY GENE 115		TRANSCRIPTION FACTOR WRKY		7	LOC_Os07g27670. WRKY87 in Zhang and Wang (2005), in Berri et al. (2009). WRKY69 in Wu et al. (2005) and Sun et al. 2014. WRKY95 in Ross et al. (2007). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0460900	LOC_Os07g27670.1		0		GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding	TO:0000188 - drought sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
9221	WRKY88	OsWRKY88	WRKY GENE 88		TRANSCRIPTION FACTOR WRKY		7	LOC_Os07g40570. AY341847. WRKY103 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY68 in Wu et al. (2005). WRKY96 in Ross et al. (2007).	 Tolerance and resistance - Disease resistance	Os07g0596900	LOC_Os07g40570.1		0		GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9222	WRKY105	OsWRKY105	WRKY GENE 105		TRANSCRIPTION FACTOR WRKY		8	LOC_Os08g09800. WRKY15 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0198000	LOC_Os08g09800.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus	TO:0000401 - plant growth hormone sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
9223	WRKY106	OsWRKY106	WRKY GENE 106		TRANSCRIPTION FACTOR WRKY		8	LOC_Os08g09810. WRKY16 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os08g0198100	LOC_Os08g09810.1		0		GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000175 - bacterial blight disease resistance	
9224	WRKY117	OsWRKY117, DLN205, OsDLN205	WRKY GENE 117	DLN repressor 205, DLN motif protein 205	TRANSCRIPTION FACTOR WRKY		8	WRKY109 in Zhang and Wang (2005). WRKY113 in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os08g0198400	LOC_Os08g09840.1		0		GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
9225	WRKY118	OsWRKY118	WRKY GENE 118		TRANSCRIPTION FACTOR WRKY		8	LOC_Os08g09900. WRKY111 in Zhang ans Wang (2005). WRKY115 in Berri et al. (2009).	 Tolerance and resistance - Disease resistance	Os08g0198900	LOC_Os08g09900.1		0		GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
9226	WRKY112	OsWRKY112	WRKY GENE 112		TRANSCRIPTION FACTOR WRKY		9	LOC_Os09g09630. WRKY62 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY77 in Wu et al. (2005). WRKY98 in Ross et al. (2007). Os09g0269300 (not found in RapDB, Ncbi and UniProt).	 Tolerance and resistance - Disease resistance		LOC_Os09g09630		0		GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding	TO:0000175 - bacterial blight disease resistance	
9227	WRKY125	OsWRKY125	WRKY GENE 125		TRANSCRIPTION FACTOR WRKY		11	WRKY59 in Ross et al. (2007). disease resistance protein RGA5-like isoform X5. BGIOSGA035675 (indica). 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os11g0684100	LOC_Os11g45750.2, LOC_Os11g45750.1		0		GO:0002215 - defense response to nematode, GO:0009624 - response to nematode, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance, TO:0000384 - nematode damage resistance	
9228	WRKY114	OsWRKY114	WRKY GENE 114		TRANSCRIPTION FACTOR WRKY114		12	WRKY77 in Zhang and Wang (2005) and  in Berri et al. (2009). WRKY100 in Wu et al. (2005). WRKY81 in Ross et al. (2007). GO:0080148: negative regulation of response to water deprivation. GO:0090333: regulation of stomatal closure. TO:0020095: stomatal process related trait. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os12g0116100	LOC_Os12g02400.1		0		GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0043565 - sequence-specific DNA binding, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0042742 - defense response to bacterium, GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0030104 - water homeostasis, GO:0006952 - defense response, GO:0010118 - stomatal movement	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000430 - germination rate, TO:0000418 - bakanae disease resistance, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity	
9229	WRKY97	OsWRKY97	WRKY GENE 97		TRANSCRIPTION FACTOR WRKY		12	WRKY99 in Wu et al. (2005).  WRKY46B in Ross et al. (2007).	 Tolerance and resistance - Disease resistance	Os12g0116400	LOC_Os12g02420.1, LOC_Os12g02420.2		0		GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006952 - defense response		
9230	WRKY95	OsWRKY95	WRKY GENE 95		TRANSCRIPTION FACTOR WRKY 95		12	LOC_Os12g02440. WRKY101 in Zhang and Wang (2005) and in Berri et al. (2009). WRKY98 in Wu et al. (2005). WRKY56 in Ross et al. (2007). WRKY100 in Sun et al. 2014. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0116600	LOC_Os12g02440.1, LOC_Os12g02440.2, LOC_Os12g02440.3, LOC_Os12g02440.4		0		GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0009408 - response to heat	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
9231	WRKY96	OsWRKY96	WRKY GENE 96		TRANSCRIPTION FACTOR WRKY		12	WRKY83 in Zhang and Wang (2005) and in Berri et al. (2009).  WRKY85 in Ryu et al (2006) and Ross et al. (2007), Sathe et al. 2019. WRKY101 in Wu et al. (2005).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0507300	LOC_Os12g32250.1		0		GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000188 - drought sensitivity	
9234	WRKY110	OsWRKY110	WRKY GENE 110		TRANSCRIPTION FACTOR WRKY		7	WRKY55 in Zhang and Wang (2005) and in Berri et al. (2009).	 Tolerance and resistance - Disease resistance				0		GO:0003700 - transcription factor activity, GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding		
9235	WRKY120	OsWRKY120	WRKY GENE 120		TRANSCRIPTION FACTOR WRKY			WRKY33 in Wu et al. (2005).	 Tolerance and resistance - Disease resistance				0		GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity		
9236	WRKY124	OsWRKY124	WRKY GENE 124		TRANSCRIPTION FACTOR WRKY			WRKY85 in Wu et al. (2005). WRKY99 in Ross et al. (2007).	 Tolerance and resistance - Disease resistance				0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
9237	WRKY78	OsWRKY78	WRKY GENE 78		TRANSCRIPTION FACTOR WRKY		1	AP001072_110726~118434 in Qiu et al. 2004. NM_188117 (obsolete data) in Qiu et al. 2004 and Choi et al. 2017.	 Tolerance and resistance - Disease resistance				0		GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance	
9238	WRKY86	OsWRKY86, OsaLeg5, Leg5	WRKY GENE 86	legumain 5	TRANSCRIPTION FACTOR WRKY 86		6	WRKY86 (AP001129_68622~70535 bp) in Qiu et al. 2004. a vegetative-related protease.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0105100			0		GO:0004197 - cysteine-type endopeptidase activity, GO:0042742 - defense response to bacterium, GO:0006508 - proteolysis, GO:0000323 - lytic vacuole	TO:0000175 - bacterial blight disease resistance	
9241	WRKY98	OsWRKY98	WRKY GENE 98		TRANSCRIPTION FACTOR WRKY		1	WRKY38 (NM_190356  (obsolete data), P0703B11.18 (obsolete data), P0485B12.10 (probably inactive due to including stop codon(s) in CDS), AP003348) in Qiu et al. (2004).	 Tolerance and resistance - Disease resistance				0		GO:0006952 - defense response, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
9242	WRKY99	OsWRKY99	WRKY GENE 99		TRANSCRIPTION FACTOR WRKY		1	WRKY44 (NM_190346 (obsolete data), P0703B11.8  (obsolete data, AP003302 (chromosome 1)) in Qiu et al. (2004).	 Tolerance and resistance - Disease resistance				0		GO:0043565 - sequence-specific DNA binding, GO:0006952 - defense response, GO:0003700 - transcription factor activity		
9243	WRKY121	OsWRKY121	WRKY GENE 121		TRANSCRIPTION FACTOR WRKY		3	LOC_Os03g53050. WRKY35 in Wu et al. (2005). WRKY87 in Ross et al. (2007). WRKY109 in Berri et al. (2009). HQ858818.	 Tolerance and resistance - Disease resistance	Os03g0741400	LOC_Os03g53050.1		0		GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
9244	BET1	BET1, ONAC081, ONAC81, NAC81	BORON EXCESS TOLERANT 1	BORON EXCESS TOLERANT1, NAC domain-containing protein 081, NAC domain-containing protein 81	NAC DOMAIN-CONTAINING PROTEIN 81		4	AB630330(Wataribune), AB630331(Nipponbare). LOC_Os04g40140.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os04g0477300	LOC_Os04g40140.1, LOC_Os04g40140.2, LOC_Os04g40140.3		0		GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0051607 - defense response to virus	TO:0006001 - salt tolerance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000018 - boron sensitivity, TO:0000148 - viral disease resistance	
9246	TPKA	TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a	TWO-PORE K+ CHANNEL A	two-pore K+ channel a	TWO-PORE K+ CHANNEL A		3		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0752300	LOC_Os03g54100.2, LOC_Os03g54100.1		0		GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis, GO:0005242 - inward rectifier potassium channel activity, GO:0031004 - potassium ion-transporting ATPase complex, GO:0009705 - plant-type vacuole membrane, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0030007 - cellular potassium ion homeostasis, GO:0009651 - response to salt stress	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0002664 - leaf yellowing tolerance, TO:0002662 - leaf rolling tolerance, TO:0000465 - mineral and ion content related trait, TO:0000609 - potassium content, TO:0000516 - relative root length, TO:0000644 - relative root dry weight, TO:0001016 - relative chlorophyll content, TO:0000636 - relative shoot dry weight, TO:0000074 - blast disease, TO:0000525 - sodium to potassium content ratio, TO:0000605 - hydrogen peroxide content	PO:0009005 - root 
9247	TPKB	TPKb, OsTPKb	TWO-PORE K+ CHANNEL B	two-pore K+ channel b	TWO-PORE K+ CHANNEL B		7		 Biochemical character	Os07g0108800	LOC_Os07g01810.1		0		GO:0000272 - polysaccharide catabolic process, GO:0030007 - cellular potassium ion homeostasis, GO:0009705 - plant-type vacuole membrane, GO:0016021 - integral to membrane, GO:0005242 - inward rectifier potassium channel activity		
9248	PTC1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1, OsTMS9-1	PERSISTENT TAPETAL CELL 1	PERSISTENT TAPETAL CELL1, MALE STERILITY1 homolog, thermo-sensitive genic male sterility 9-1, MALE STERILITY 1	_	ptc1, osms1, nt-tms9-1, tms9-1, OsMS1wenmin1, wenmin1	9	ortholog of Arabidopsis MS1. AP005308, GU597363, AC005308. Q67V61. wenmin means temperature-sensitive in Chinese. 	 Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0449000	LOC_Os09g27620.1		0		GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0010584 - pollen exine formation, GO:0042393 - histone binding, GO:0043068 - positive regulation of programmed cell death, GO:0048658 - tapetal layer development, GO:0005737 - cytoplasm, GO:0010143 - cutin biosynthetic process, GO:0046872 - metal ion binding, GO:0009266 - response to temperature stimulus, GO:0009555 - pollen development, GO:0048653 - anther development	TO:0000067 - genic male sterility-thermo sensitive, TO:0000053 - pollen sterility, TO:0000531 - anther length, TO:0000432 - temperature response trait, TO:0000437 - male sterility, TO:0000187 - anther color	PO:0009071 - anther wall tapetum , PO:0001007 - pollen development stage 
9250	API5	API5, Os API5, OsAPI5	APOPTOSIS INHIBITOR 5	APOPTOSIS INHIBITOR5		api5, api5-1, api5-2	2	API5 encodes a putative homolog of antiapoptosis protein Api5 in animal. Q6Z6S1.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0313400	LOC_Os02g20930.1		0		GO:0043067 - regulation of programmed cell death, GO:0005634 - nucleus, GO:0009555 - pollen development		
9251	AIP1	AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56	API5-INTERACTING PROTEIN 1	API5-INTERACTING PROTEIN1, RNA helicase 56, HLA-B associated transcript 1, spliceosome RNA helicase UAP56	API5-INTERACTING PROTEIN 1		1	Q0JM17. LOC_Os01g36890. GQ478227. DEAD-box RNA helicase protein. Oryza sativa homologue of HLA-B associated transcript 1 (BAT1) protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0549700	LOC_Os01g36890.2		0		GO:0003724 - RNA helicase activity, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding, GO:0006397 - mRNA processing, GO:0005634 - nucleus, GO:0016887 - ATPase activity, GO:0009737 - response to abscisic acid stimulus, GO:0032508 - DNA duplex unwinding, GO:0009651 - response to salt stress, GO:0051028 - mRNA transport, GO:0008380 - RNA splicing, GO:0003677 - DNA binding	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity	
9252	AIP2	AIP2, Os AIP2, OsAIP2, OsRH15	API5-INTERACTING PROTEIN 2	API5-INTERACTING PROTEIN2, RNA helicase 15	API5-INTERACTING PROTEIN 2		1	Q5JK84. LOC_Os01g36920. DEAD-box RNA helicase protein.	 Biochemical character	Os01g0550000	LOC_Os01g36920.2		0		GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity		
9253	BUI1	BUI1, FH5, FH5/BUI1, RMD, OsRMD, OsFH5, FH5/RMD	BENT UPPERMOST INTERNODE 1	BENT UPPERMOST INTERNODE1, class II formin FH5, Rice Morphology Determinant, formin homology 5, Type II Formin FH5, forming family protein 5, FH2 protein 5, FH2 domain protein 5, rice morphology determinant1-1		bui1, rmd, rmd-1, rmd-2, osfh5, rmd1-1	7	Q84ZL0, AF234296, HQ123580. actin-organizing protein. GO:0060918: auxin transport. Extensin family protein. TO: Indole-3-acetic acid content. GO:0070998: sensory perception of gravity.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape	Os07g0596300	LOC_Os07g40520.1, LOC_Os07g40510.1		0		GO:0004721 - phosphoprotein phosphatase activity, GO:0009941 - chloroplast envelope, GO:0008017 - microtubule binding, GO:0001578 - microtubule bundle formation, GO:0051125 - regulation of actin nucleation, GO:0000226 - microtubule cytoskeleton organization, GO:0051016 - barbed-end actin filament capping, GO:0009416 - response to light stimulus, GO:0032922 - circadian regulation of gene expression, GO:0009959 - negative gravitropism, GO:0051017 - actin filament bundle formation, GO:0003779 - actin binding, GO:0030041 - actin filament polymerization, GO:0009826 - unidimensional cell growth, GO:0009507 - chloroplast, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0000902 - cell morphogenesis, GO:0060627 - regulation of vesicle-mediated transport, GO:0009733 - response to auxin stimulus, GO:0001558 - regulation of cell growth, GO:0030036 - actin cytoskeleton organization	TO:0002756 - shoot habit, TO:0000268 - inflorescence shape, TO:0000163 - auxin sensitivity, TO:0000484 - seed shape, TO:0000547 - primary branch number, TO:0000262 - panicle shape, TO:0000207 - plant height, TO:0002710 - root shape, TO:0000043 - root anatomy and morphology trait, TO:0002693 - gravity response trait, TO:0002672 - auxin content, TO:0000075 - light sensitivity, TO:0000391 - seed size, TO:0000146 - seed length	PO:0025034 - leaf , PO:0020132 - columella root cap cell 
9254	SAP11	OsDOG, OsSAP11, DOG	STRESS ASSOCIATED PROTEIN GENE 11	Oryza sativa dwarf rice with overexpression of gibberellin-induced gene, dwarf rice with overexpression of gibberellin-induced gene, stress associated protein 11	STRESS ASSOCIATED PROTEIN 11		8	gibberellin-induced A20/AN1 zinc-finger protein. Q84PD8. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Vegetative organ - Culm	Os08g0504700 	LOC_Os08g39450.1		0		GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0042542 - response to hydrogen peroxide, GO:0009751 - response to salicylic acid stimulus, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0001170 - seed development stage 
9255	LTN1	LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35	LEAF TIP NECROSIS 1	Leaf tip necrosis1, Phosphate Overaccumulator2, PHOSPHATE2, PHOSPHATE 2, Ubiquitin-conjugating enzyme 35	UBIQUITIN-CONJUGATING ENZYME 35	ospho2, ltn1, pho2	5	AC104709, AU032431. putative ortholog of Arabidopsis PHO2. rice ortholog of AtPHO2. The alternative isoform PHO2.2 overlapped with LOC_Os05g48400 (Secco et al. 2013). TO:0020102: phosphate content. TO:0006055: selenium concentration.	 Tolerance and resistance - Stress tolerance	Os05g0557700 	LOC_Os05g48400.1, LOC_Os05g48390.1		0		GO:0009737 - response to abscisic acid stimulus, GO:0055062 - phosphate ion homeostasis, GO:0012505 - endomembrane system, GO:0016036 - cellular response to phosphate starvation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010966 - regulation of phosphate transport, GO:0016881 - acid-amino acid ligase activity, GO:0009733 - response to auxin stimulus, GO:0042594 - response to starvation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root , PO:0009015 - portion of vascular tissue , PO:0009049 - inflorescence , PO:0020124 - root stele , PO:0008039 - stem base 
9256	MIR399F	OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f	MICRORNA399F	microRNA399f, osa-miRNA399f	_		6	miRBASE accession: MI0001058. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)	 Other,  Tolerance and resistance - Stress tolerance				0		GO:0010106 - cellular response to iron ion starvation, GO:0051365 - cellular response to potassium ion starvation, GO:0016036 - cellular response to phosphate starvation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
9257	MIR399J	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j	MICRORNA399J	microRNA399j, osa-miRNA399j	_		4	miRBASE accession: MI0001062. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) TO:0020102: phosphate content. GO:0072732: cellular response to calcium ion starvation.LM379302	 Tolerance and resistance - Stress tolerance,  Other				0		GO:0042594 - response to starvation, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0051365 - cellular response to potassium ion starvation, GO:0016036 - cellular response to phosphate starvation, GO:0006379 - mRNA cleavage, GO:0055062 - phosphate ion homeostasis, GO:0010106 - cellular response to iron ion starvation	TO:0000102 - phosphorus sensitivity	
9258	PAP10	OsPAP10	PURPLE ACID PHOSPHATASE 10	purple acid phosphatase 10	PURPLE ACID PHOSPHATASE 10				 Biochemical character				0				
9260	_	bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22	_	brown planthopper induced008a, Brown planthopper induced 008a, Rapid alkalization factor 22	_		6	AY256682. a protein homologous to wheat Wir1. LOC_Os06g29730.	 Tolerance and resistance - Insect resistance	Os06g0493100	LOC_Os06g29730.1		0		GO:0009723 - response to ethylene stimulus, GO:0002213 - defense response to insect	TO:0000173 - ethylene sensitivity, TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance	
9261	_	OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, OsMAPK17-2, MAPK17-2	_	Mitogen-activated protein kinase13, BTH-Induced MAP Kinase 2, benzothiadiazole-induced MAP kinase 2	_		2	AY524973, AF194416. Q0E459, A2X0M1. OsMPK13 in Nanda et al. 2018, He et al. 2021, Viana et al. 2021.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os02g0135200 	LOC_Os02g04230.3, LOC_Os02g04230.2, LOC_Os02g04230.1		0		GO:0009753 - response to jasmonic acid stimulus, GO:0004707 - MAP kinase activity, GO:0009723 - response to ethylene stimulus, GO:0009814 - defense response, incompatible interaction, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0009751 - response to salicylic acid stimulus, GO:0002213 - defense response to insect	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000173 - ethylene sensitivity, TO:0000303 - cold tolerance	
9262	MPK17	OsMPK17, OsMPK21-1, MPK21-1	MITOGEN-ACTIVATED PROTEIN KINASE 17	Mitogen-activated protein kinase 17, MAP kinase 21-1	MITOGEN-ACTIVATED PROTEIN KINASE 17		5	AAT39148. Q6L5F7. GO:1900425: negative regulation of defense response to bacterium.	 Character as QTL - Plant growth activity,  Biochemical character,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Tolerance and resistance - Insect resistance,  Reproductive organ - panicle,  Vegetative organ - Culm	Os05g0576800	LOC_Os05g50120.1		0		GO:0009723 - response to ethylene stimulus, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0005739 - mitochondrion, GO:0004707 - MAP kinase activity, GO:0002213 - defense response to insect, GO:0000165 - MAPKKK cascade, GO:0005829 - cytosol, GO:0009738 - abscisic acid mediated signaling, GO:0005886 - plasma membrane	TO:0000145 - internode length, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000173 - ethylene sensitivity, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000382 - 1000-seed weight, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000447 - filled grain number	
9263	BZIP50	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, bZIP74, OsbZIP50-S	b-ZIP TRANSCRIPTION FACTOR 50	b-ZIP transcription factor 60, b-ZIP transcription factor 50, b-ZIP transcription factor 74	b-ZIP TRANSCRIPTION FACTOR 50	bzip74	6	Q69XV0. a rice orthologue of AtbZIP60. As a response to stress, the ER stress sensor IRE1 transduces signals through the unconventional splicing of OsbZIP50 mRNA, which causes a frameshift producing a nuclear localization signal in the protein designated OsbZIP50-S, which regulates the expression of many ER stress-responsive genes. OsbZIP74 in Liu et al. 2020,  Lin et al. 2023.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os06g0622700	LOC_Os06g41770.1		0		GO:0006986 - response to unfolded protein, GO:0046983 - protein dimerization activity, GO:0005634 - nucleus, GO:0034976 - response to endoplasmic reticulum stress, GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005789 - endoplasmic reticulum membrane, GO:0043565 - sequence-specific DNA binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000432 - temperature response trait	
9264	_	SDRP	_	similar to DNA-directed RNA polymerase	_		3			Os03g0102200	LOC_Os03g01230.1, LOC_Os03g01230.2		0		GO:0003899 - DNA-directed RNA polymerase activity, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
9266	ZOS12-02	OsART1, STAR3, OsZOS12-02, ART1	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-02	AL RESISTANCE TRANSCRIPTION FACTOR1, Al resistance transcription factor 1, Aluminum rhizotoxicity 1, ALUMINUM RESISTANCE TRANSCRIPTION FACTOR1, Al resistance TF1, zinc-finger protein TFIIIA class of Oryza sativa 12-02, ZPT of Oryza sativa 12-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-02	art1, art1-1, art1-2	12	AB379846(Koshihikari). Q2QX40. ART1 regulates the expression of 31 genes in the downstream. a C2H2-type zinc finger transcription factor for Al tolerance.	 Tolerance and resistance - Stress tolerance	Os12g0170400	LOC_Os12g07280.1		0		GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0043620 - regulation of transcription in response to stress, GO:0010044 - response to aluminum ion, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation	TO:0000354 - aluminum sensitivity, TO:0000276 - drought tolerance	PO:0009005 - root 
9267	STAR1	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1	SENSITIVE TO ALUMINIUM RHIZOTOXICITY 1	SENSITIVE TO AL RHIZOTOXICITY1, Efflux transporter of nicotianamine 2, ABC transporter superfamily ABCI subgroup member 12	ABC TRANSPORTER I12		6	Q0D9V6. STAR1 is one of the downstream genes regulated by ART1. AB253626(Koshihikari). STAR1 encodes a nucleotide binding domain of ABC(ATP binding cassette) transporter. STAR2 encodes a transmembrane domain of ABT transporter. GO:1904880: response to hydrogen sulfide.	 Tolerance and resistance - Stress tolerance	Os06g0695800	LOC_Os06g48060.1		0		GO:0012506 - vesicle membrane, GO:0010044 - response to aluminum ion, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0005515 - protein binding, GO:0005460 - UDP-glucose transmembrane transporter activity	TO:0000354 - aluminum sensitivity	
9268	STAR2	OsSTAR2, OsSATR2	SENSITIVE TO ALUMINIUM RHIZOTOXICITY 2	SENSITIVE TO AL RHIZOTOXICITY2, sensitive to Al rhizotoxicity2	ABC TRANSPORTER		5	Q5W7C1. AB379845(Nipponbare). the rice ortholog of the Arabidopsis Al sensitive mutant als3. STAR2 is one of the downstream genes regulated by ART1. STAR1 encodes a nucleotide binding domain of ABC(ATP binding cassette) transporter. STAR2 encodes a transmembrane domain of ABT transporter. GO:1904880: response to hydrogen sulfide.	 Tolerance and resistance - Stress tolerance	Os05g0119000	LOC_Os05g02750.1		0		GO:0010044 - response to aluminum ion, GO:0012506 - vesicle membrane, GO:0005460 - UDP-glucose transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005515 - protein binding		
9269	_	OsNOA1	_	NO-associated protein 1	_				 Tolerance and resistance - Stress tolerance				0				
9270	_	OsNR	_	nitrate reductase	_				 Biochemical character				0				
9272	_	CysR14	_	cysteine-rich 14kDa prolamin	_			indicated as 13a (larger component) in Ogawa et al. 1987.	 Seed - Physiological traits - Storage substances				0				
9273	_	CysR16	_	cysteine-rich 16kDa prolamin	_				 Seed - Physiological traits - Storage substances				0				
9275	DREB1E	OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E, ethylene response factor 30, APETALA2/ethylene-responsive element binding protein 160	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E		4	Q8H273. AY114110. AY785896. AY258283.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0572400	LOC_Os04g48350.1		0		GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009631 - cold acclimation, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
9276	DHN1	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23	DEHYDRIN 1	Dehydration-stress inducible protein 1, Dehydration Stress-inducible Protein 1, late embryogenesis abundant protein 23, SK3-type dehydrin	_		2	AY786415. EF444534. AB011367. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0669100 	LOC_Os02g44870.1		0		GO:0009651 - response to salt stress, GO:0042743 - hydrogen peroxide metabolic process, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0009415 - response to water, GO:0006950 - response to stress, GO:0009609 - response to symbiotic bacterium, GO:0009414 - response to water deprivation	TO:0000295 - chlorophyll-b content, TO:0000276 - drought tolerance, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
9277	SODA1	SodA1, OsSODA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, OsMnSOD, MnSOD1, OsMnSOD1	SUPEROXIDE DISMUTASE A1	Superoxide dismutase A1, mitochondrial Mn-SOD, Mitochondrial Manganese Superoxide Dismutase, Manganese Superoxide Dismutase, Manganese-Superoxide Dismutase	SUPEROXIDE DISMUTASE A1		5	Q43008. L19436. L34038. AB026725. D29734.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0323900 	LOC_Os05g25850.2, LOC_Os05g25850.1		0		GO:0009408 - response to heat, GO:0006801 - superoxide metabolic process, GO:0009609 - response to symbiotic bacterium, GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0005759 - mitochondrial matrix, GO:0009610 - response to symbiotic fungus, GO:0004784 - superoxide dismutase activity, GO:0042742 - defense response to bacterium	TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000350 - cms-hl type, TO:0000303 - cold tolerance	PO:0009006 - shoot system 
9278	SODB	SodB, Fe-SOD, Fe- SOD, OsFe-SOD, Fe+-SOD, OsFe+-SOD, OsFe-SODa, OsFe-SODb, OsFeSODb, FeSODb, OsFSD1.2, FSD1.2, FeSOD2, OsFSD2, FSD2, OsFSD1, FSD1, ALM1, OsALM1	SUPEROXIDE DISMUTASE B	Superoxide dismutase B, Fe-dependent superoxide dismutase, iron superoxide dismutase, iron-superoxide dismutase, Fe-dependent SOD 1.2, Fe-superoxide dismutase 2	SUPEROXIDE DISMUTASE B		6	AY770495. AY770496 (promoter sequence), AY871310 (alternative spliced). OsFSD2 in Ge et al. 2020. OsFSD1 in Navarro et al. 2021. GO:0072593: reactive oxygen species metabolic process. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0143000 	LOC_Os06g05110.3, LOC_Os06g05110.1		0		GO:0046688 - response to copper ion, GO:0009735 - response to cytokinin stimulus, GO:0009414 - response to water deprivation, GO:0009725 - response to hormone stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0046872 - metal ion binding, GO:0004784 - superoxide dismutase activity, GO:0006979 - response to oxidative stress, GO:0006801 - superoxide metabolic process	TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000401 - plant growth hormone sensitivity	
9279	LHY	LHY, Os-LHY, OsLHY	LATE ELONGATED HYPOCOTYL	LATE ELONGATED HYPOCOTYL				circadian clock-related gene.					0				
9280	MTI4C	MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c	METALLOTHIONEIN I-4C	metallochionein 1-4b, Metallothionein 1d, type 1 metallothionein d	METALLOTHIONEIN I-4C		12	type 1 small Cys-rich and metal binding protein, metallochionein. Q2QNC3. OsMT1c in Wong et al. 2004. OsMT-I-4c in Zhou et al. 2006. OsMT1d in Kumar et al. 2012, Shim et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0571100	LOC_Os12g38300.1		0		GO:0000302 - response to reactive oxygen species, GO:0005507 - copper ion binding	TO:0002657 - oxidative stress	PO:0009005 - root 
9281	PDIL1-1	OsPDIL1;1, PDIL1;1, PDIL 1-1, PDI, OsPDIL1-1, OsTrx28, Trx28	PROTEIN DISULFIDE ISOMERASE-LIKE 1-1	PROTEIN DISULFIDE ISOMERASE-LIKE 1;1, protein disulfide-isomerase, PDI-like protein 1-1, Protein Disulfide Isomerase Like 1-1, Thioredoxin 28	PROTEIN DISULFIDE ISOMERASE-LIKE 1-1	esp2, pdil1;1, PDIL1-1Delta, pdil1-1	11	Q53LQ0. AB039278. AB373950. D15804. an ortholog of human PDI. chaperone. PO:0030123: panicle inflorescence. GO:2000014: regulation of endosperm development. TO:0000942: aleurone layer morphology trait.	 Seed - Physiological traits,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0199200	LOC_Os11g09280.2, LOC_Os11g09280.1		0		GO:0055122 - response to very low light intensity stimulus, GO:0003756 - protein disulfide isomerase activity, GO:0046689 - response to mercury ion, GO:0009408 - response to heat, GO:0010229 - inflorescence development, GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process, GO:0005788 - endoplasmic reticulum lumen, GO:0048316 - seed development, GO:0009960 - endosperm development, GO:0034975 - protein folding in endoplasmic reticulum, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000653 - seed development trait, TO:0000598 - protein content, TO:0000460 - light intensity sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000333 - sugar content, TO:0000621 - inflorescence development trait, TO:0000382 - 1000-seed weight, TO:0000104 - floury endosperm, TO:0000266 - chalky endosperm	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009005 - root , PO:0025034 - leaf , PO:0009047 - stem 
9282	PDIL2-3	PDIL2;3, OsPDIL2;3, PDIL 2-3, OsPDIL2-3, OsTrx27, Trx27	PROTEIN DISULFIDE ISOMERASE-LIKE 2-3	PROTEIN DISULFIDE ISOMERASE-LIKE 2;3, protein disulfide-isomerase 2-3, protein disulfide isomerase 2-3, PDI-like protein 2-3, Thioredoxin 27	PROTEIN DISULFIDE ISOMERASE-LIKE 2-3		9	an ortholog of human P5. Q67UF5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0451500	LOC_Os09g27830.3, LOC_Os09g27830.2, LOC_Os09g27830.1		0		GO:0009408 - response to heat, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0003756 - protein disulfide isomerase activity, GO:0005576 - extracellular region, GO:0006662 - glycerol ether metabolic process, GO:0045454 - cell redox homeostasis, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0034976 - response to endoplasmic reticulum stress, GO:0005783 - endoplasmic reticulum	TO:0000259 - heat tolerance	
9284	PDIL1-4	PDIL1;4, PDIL 1-4, OsPDIL1-4, OsTrx05, Trx05, OsTrx5, Trx5	PROTEIN DISULFIDE ISOMERASE-LIKE 1-4	PROTEIN DISULFIDE ISOMERASE-LIKE 1;4, protein disulfide-isomerase 1-4, protein disulfide isomerase 1-4, PDI-like protein 1-4, thioredoxin 5	PROTEIN DISULFIDE ISOMERASE-LIKE 1-4		2	a paralog of PDIL1;1. Q67IX6. chaperone.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0100100	LOC_Os02g01010.1		0		GO:0034975 - protein folding in endoplasmic reticulum, GO:0003756 - protein disulfide isomerase activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0005788 - endoplasmic reticulum lumen, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity		
9285	CYSP13	CysP13, OsCYSP13, CpP13, PG5a, Prol-06, pro13b.11, OsPRO13B.11, PROLM9, OsPROLM9	CYSTEINE-POOR 13KDA PROLAMIN	cysteine-poor 13kDa prolamin, Cys-poor 13-kDa prolamin, Prolamin 9, 13 kDa prolamin B.11	CYSTEINE-POOR 13KDA PROLAMIN		5	indicated as 13b (smaller component) in Ogawa et al. 1987. Q0DJ45. D73383. AY427573 (promoter). Os05g0329100, LOC_Os05g26377, LOC_Os05g26386 (Yoon et al. 2012). LOC_Os05g26377, Os05g0329100 (Saito et al. 2012). PROLM9 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os05g0329100	LOC_Os05g26377.1, LOC_Os05g26386.1		0		GO:0045735 - nutrient reservoir activity, GO:0005773 - vacuole, GO:0033095 - aleurone grain, GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
9286	ERO1	OsERO1, Ero1	ENDOPLASMIC RETICULUM OXIDOREDUCTIN 1	ER membrane-localized sulfhydryl oxidase Ero1, ER membrane-localized sulfhydryl oxidase 1	ENDOPLASMIC RETICULUM OXIDOREDUCTIN 1		3	CB654132.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0733800	LOC_Os03g52340.1, LOC_Os03g52340.2		0		GO:0050660 - FAD binding, GO:0009408 - response to heat, GO:0006467 - protein thiol-disulfide exchange, GO:0005789 - endoplasmic reticulum membrane, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	TO:0000259 - heat tolerance	
9287	_	BiP	_	immunoglobulin heavy chain binding protein	_								0				
9288	_	RA17, RAP, RAG1, OsEnS-97	_	16-kDa rice allergen, 16 kDa albumin, endosperm-specific gene 97	_		7	ABC domain containing storage protein. Q01883. a major allergenic protein. X66257. D11433. LOC_Os07g11360.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os07g0214100	LOC_Os07g11360.1		0		GO:0009651 - response to salt stress, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005615 - extracellular space	TO:0006001 - salt tolerance	
9289	NRFG2	PFL, OsNRFG2	NEO-TETRAPLOID RICE FERTILITY RELATED GENE 2	Protodermal Factor Like, neo-tetraploid rice fertility related gene 2	_		6	EU267976. AP003682.3, P0427B07.25.	 Seed - Morphological traits,  Vegetative organ - Culm,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity	Os06g0553200	LOC_Os06g35970.1, LOC_Os06g35970.2		0			TO:0000455 - seed set percent, TO:0000371 - yield trait, TO:0000421 - pollen fertility, TO:0000447 - filled grain number, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000040 - panicle length	
9290	FTSZ1	FtsZ1, FtsZ, OsFtsZ1, OsFtsZ	_	plastid division protein FtsZ1	_		4	plastid division protein	 Seed - Morphological traits - Endosperm	Os04g0665400	LOC_Os04g56970.2, LOC_Os04g56970.1		0		GO:0007017 - microtubule-based process, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0005874 - microtubule, GO:0051258 - protein polymerization		
9291	_	FtsZ2-1	_	plastid division protein FtsZ2-1	_		3	plastid division protein	 Seed - Morphological traits - Endosperm	Os03g0646100	LOC_Os03g44420.1		0		GO:0003924 - GTPase activity, GO:0051301 - cell division, GO:0005525 - GTP binding, GO:0051258 - protein polymerization, GO:0043234 - protein complex		
9292	ARC5	OsARC5, Os ARC5, OsDRP5B, DRP5B	ACCUMULATION AND REPLICATION OF CHLOROPLASTS 5	ACCUMULATION AND REPLICATION OF CHLOROPLASTS5	DYNAMIN-RELATED PROTEIN 5B	arc5	12	plastid division protein. dynamin super family member.	 Seed - Morphological traits - Endosperm	Os12g0178700	LOC_Os12g07880.1		0		GO:0003924 - GTPase activity, GO:0005525 - GTP binding		
9293	_	OsSDIR1, SDIR1, OsRING198, RING198	_	SALT-AND DROUGHT-INDUCED RING FINGER 1, RING-type E3 ubiquitin ligase 198	_	sdir1, sdir1-1	3	LOC_Os03g16570. ABF95226.1. ortholog of Arabidopsis SDIR1. E3 ubiquitin ligase.	 Tolerance and resistance - Stress tolerance	Os03g0272300	LOC_Os03g16570.1, LOC_Os03g16570.2, LOC_Os03g16570.3		0		GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
9294	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, ABF2, OsABF3, ABF3, OsbZIP46CA1, OsZIP46, ZIP46, OsbZIP46/OsABF2	b-ZIP TRANSCRIPTION FACTOR 46	ABI5-like1, bZIP transcription factor 46, AREB/ABF-family transcription factor OsAREB8, AREB/ABF-family protein 8, ABA-responsive element binding factor 2	b-ZIP TRANSCRIPTION FACTOR 46	abl1	6	basic region/leucine zipper motif transcription factor. GU552783. GO:2000070: regulation of response to water deprivation. OsbZIP46CA1: a truncated and constitutively active form of OsbZIP46 (Chang et al. 2017).	 Tolerance and resistance - Stress tolerance,  Other	Os06g0211200	LOC_Os06g10880.3, LOC_Os06g10880.1, LOC_Os06g10880.2		0		GO:0046983 - protein dimerization activity, GO:0009414 - response to water deprivation, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus	TO:0000429 - salt sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000188 - drought sensitivity, TO:0000432 - temperature response trait, TO:0000276 - drought tolerance	
9295	IRT1	OsIRT1, ZIP10, OsZIP10, OsZIP12, ZIP12	IRON-REGULATED TRANSPORTER 1	IRON-REGULATED TRANSPORTER1, zinc transporter 10, Zrt-Irt-like protein 10, ZRT-IRT-related protein 10, ZIP transporter 10, Zinc- and iron-regulating transport-like protein 12, Zn- and Fe-regulating transport-like protein 12	IRON-REGULATED TRANSPORTER 1		3	Fe2+ transprter. Q75HB1. AB070226, D49213. iron regulated metal transporter. OsZIP12 in Zeng et al. 2024. TO:0006049: iron concentration. TO:0020089: iron content trait. TO:0006053: zinc concentration. TO:0020090: zinc content trait. GO:1990641: response to iron ion starvation. GO:0035864: response to potassium ion. TO:0006059: cadmium content trait. GO: 0120127: response to zinc ion starvation. TO:0020096: mineral and ion transport trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0667500 	LOC_Os03g46470.1		0		GO:0007584 - response to nutrient, GO:0005886 - plasma membrane, GO:0006826 - iron ion transport, GO:0042594 - response to starvation, GO:0010106 - cellular response to iron ion starvation, GO:0010269 - response to selenium ion, GO:0046686 - response to cadmium ion, GO:0009609 - response to symbiotic bacterium, GO:0070574 - cadmium ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005385 - zinc ion transmembrane transporter activity, GO:0015691 - cadmium ion transport, GO:0010042 - response to manganese ion, GO:0016020 - membrane, GO:0055072 - iron ion homeostasis, GO:0051592 - response to calcium ion, GO:0046687 - response to chromate	TO:0000034 - chromium sensitivity, TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity, TO:0000073 - manganese sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000032 - selenium sensitivity	
9296	JAR1	OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5	JASMONYL-L-ISOLEUCINE SYNTHASE 1	jasmonyl-L-isoleucine synthase 1, JASMONATE RESISTANT 1, GRETCHEN HAGEN 3.5, JA-Ile synthetase 1	JASMONYL-L-ISOLEUCINE SYNTHASE 1	osjar1, osjar1-1, osjar1-2, osjar1-3, osgh3-5, jar1, jar1-1, Osjar1#1, Osjar1#2	5	Q6I581. GO:1903338: regulation of cell wall organization or biogenesis. GO:1902427: regulation of water channel activity.	 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os05g0586200 	LOC_Os05g50890.1, LOC_Os05g50890.3, LOC_Os05g50890.2		0		GO:0009861 - jasmonic acid and ethylene-dependent systemic resistance, GO:0006952 - defense response, GO:0080123 - jasmonate-amino synthetase activity, GO:0046688 - response to copper ion, GO:0052315 - phytoalexin biosynthetic process, GO:0009734 - auxin mediated signaling pathway, GO:0005773 - vacuole, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009901 - anther dehiscence, GO:0009694 - jasmonic acid metabolic process, GO:0009507 - chloroplast, GO:0009753 - response to jasmonic acid stimulus, GO:0009585 - red, far-red light phototransduction, GO:0009627 - systemic acquired resistance, GO:0009640 - photomorphogenesis, GO:0009733 - response to auxin stimulus, GO:0070566 - adenylyltransferase activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0010119 - regulation of stomatal movement, GO:0010193 - response to ozone, GO:0002215 - defense response to nematode, GO:0031348 - negative regulation of defense response	TO:0002672 - auxin content, TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0000164 - stress trait, TO:0002616 - flowering time, TO:0000179 - biotic stress trait, TO:0000420 - fertility related trait, TO:0000206 - leaf angle, TO:0000474 - glume opening, TO:0000609 - potassium content, TO:0006001 - salt tolerance, TO:0000384 - nematode damage resistance, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000163 - auxin sensitivity, TO:0002669 - diterpenoid phytoalexin content	PO:0009066 - anther , PO:0009006 - shoot system , PO:0007616 - flowering stage 
9297	JAR2	OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2	JASMONYL-L-ISOLEUCINE SYNTHASE 2	jasmonyl-L-isoleucine synthase 2, JASMONATE RESISTANT 2, GRETCHEN HAGEN 3.3	JASMONYL-L-ISOLEUCINE SYNTHASE 2		1	Q5NAZ7.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0221100 	LOC_Os01g12160.2, LOC_Os01g12160.1		0		GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009694 - jasmonic acid metabolic process, GO:0016874 - ligase activity, GO:0009416 - response to light stimulus	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	
9298	JAR3	OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12	JASMONYL-L-ISOLEUCINE SYNTHASE 3	jasmonyl-L-isoleucine synthase 3, Gretchen Hagen 3.12	JASMONYL-L-ISOLEUCINE SYNTHASE 3		11	Q53P49.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0186500 	LOC_Os11g08340.1		0		GO:0010119 - regulation of stomatal movement, GO:0009507 - chloroplast, GO:0080123 - jasmonate-amino synthetase activity, GO:0009651 - response to salt stress, GO:0009627 - systemic acquired resistance, GO:0009416 - response to light stimulus, GO:0009415 - response to water, GO:0009585 - red, far-red light phototransduction, GO:0009640 - photomorphogenesis, GO:0070566 - adenylyltransferase activity, GO:0031348 - negative regulation of defense response, GO:0005773 - vacuole, GO:0009733 - response to auxin stimulus, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway, GO:0009861 - jasmonic acid and ethylene-dependent systemic resistance, GO:0009694 - jasmonic acid metabolic process, GO:0010193 - response to ozone	TO:0006001 - salt tolerance, TO:0000237 - water stress trait, TO:0000163 - auxin sensitivity	
9299	RSN1	Rsn1	RHIZOCTONIA SOLANI NECROSIS 1		_	rsn1	7	P0657H12.28. cytokinin-O-glucosyltransferase. locus controlling sensitivity of rice to a necrosis-inducing phytotoxin from Rhizoctonia solani. LOC_Os07g30610(Os07g0489200) or LOC_Os07g30620(Os07g0489300).	 Tolerance and resistance - Disease resistance				0				
9300	BH4	Bh4, OsBH4, OsATL14, ATL14	BLACK HULL 4	Black hull 4, black husk 4, amino acid transporter-like 14	AMINO ACID TRANSPORTER		4	LOC_Os04g38660/LOC_Os04g38670. cDNA from W1943 (FQ377518), cDNA from Guangluai 4 (FQ377519), ORW1943Ba0077G13 (FQ377585), and Bh4 genomic sequences of 52 cultivated and wild rice varieties (FQ377520-FQ377566 and FQ377579-FQ377583). KC128691 to KC128808. Os04g0460000 (not found in RapDB, Ncbi and UniProt).	 Biochemical character,  Coloration - Others	Os04g0460200	LOC_Os04g38660.1, LOC_Os04g38670.1		0		GO:0016021 - integral to membrane, GO:0043473 - pigmentation	TO:0000264 - lemma and palea color, TO:0000190 - seed coat color	PO:0009010 - seed 
9301	EHD3	Ehd3, OsPHD36, PHD36	EARLY HEADING DATE 3	Early heading date3, PHD transcription factor, Plant homeo-domain finger protein 36, PHD finger protein 36	PHD FINGER PROTEIN 36		8	BGIOSGA027795. B8BA67 (indica). a nuclear protein with PHD fingers. HQ858842.	 Reproductive organ - Heading date	Os08g0105000	LOC_Os08g01420.1		0		GO:0009908 - flower development, GO:0009648 - photoperiodism, GO:0008270 - zinc ion binding	TO:0002616 - flowering time	
9302	AMT2;2	OsAMT2;2, AMT2;2, OsAMT2.2	AMMONIUM TRANSPORTER 2;2	Ammonium transporter 2 member 2, AMMONIUM TRANSPORTER 2;2	AMMONIUM TRANSPORTER 2;2		1	Q8S233. AP003252.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0831300	LOC_Os01g61510.1		0		GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0008519 - ammonium transmembrane transporter activity	TO:0000114 - flooding related trait	PO:0009005 - root 
9303	AMT2;3	OsAMT2;3, AMT2;3, OsAMT2.3	AMMONIUM TRANSPORTER 2;3	Ammonium transporter 2 member 3, AMMONIUM TRANSPORTER 2;3	AMMONIUM TRANSPORTER 2;3		1	Q8S230. AP003252.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0831900	LOC_Os01g61550.1		0		GO:0009413 - response to flooding, GO:0008519 - ammonium transmembrane transporter activity, GO:0034059 - response to anoxia, GO:0010157 - response to chlorate, GO:0016021 - integral to membrane	TO:0000114 - flooding related trait	PO:0009047 - stem , PO:0009005 - root 
9304	AMT3;2	AMT3;2, OsAMT3;2, OsAMT3.2	AMMONIUM TRANSPORTER 3;2	AMMONIUM TRANSPORTER 3;2, Ammonium transporter 3 member 2	AMMONIUM TRANSPORTER 3;2	OsAMT3.2-cr1, OsAMT3.2-cr2	3	Q851M9. AC104487.	 Character as QTL - Yield and productivity,  Biochemical character	Os03g0838400	LOC_Os03g62200.1		0		GO:0009620 - response to fungus, GO:0016021 - integral to membrane, GO:0045848 - positive regulation of nitrogen utilization, GO:0008519 - ammonium transmembrane transporter activity	TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000457 - total biomass yield	
9305	AMT3;3	OsAMT3;3, AMT3;3, OsAMT3.3	AMMONIUM TRANSPORTER 3;3	AMMONIUM TRANSPORTER 3;3, Ammonium transporter 3 member 3	AMMONIUM TRANSPORTER 3;3		2	Q69T29. AP004775.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0550800	LOC_Os02g34580.1		0		GO:0016021 - integral to membrane, GO:0070482 - response to oxygen levels, GO:0008519 - ammonium transmembrane transporter activity	TO:0000015 - oxygen sensitivity	
9306	ASN1	OsASN1, OsAS1, AS1	ASPARAGINE SYNTHETASE 1	asparagine synthetase 1, Asparagine Synthetase1	ASPARAGINE SYNTHETASE 1	as1, as1-m1, as1-m2, osas1-1, osas1-2, cr-as1, cr-as1-1, cr-as1-2	3	CI197925. APC regulator. APC regulatory subunit. GO:1904844: response to L-glutamine.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0291500	LOC_Os03g18130.1, LOC_Os03g18130.2, LOC_Os03g18130.3, LOC_Os03g18130.4		0		GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium, GO:0019740 - nitrogen utilization, GO:0060359 - response to ammonium ion, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0006529 - asparagine biosynthetic process	TO:0000249 - leaf senescence, TO:0000203 - bacterial leaf streak disease resistance, TO:0002673 - amino acid content, TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance	PO:0000071 - companion cell , PO:0001054 - 4 leaf senescence stage , PO:0009051 - spikelet , PO:0020142 - stem internode , PO:0009005 - root 
9307	ASN	OsASN2, OsAS, OsAS2, AS2	ASPARAGINE SYNTHETASE 	asparagine synthetase 2, Asparagine Synthetase2	ASPARAGINE SYNTHETASE		6	D83378, U55873. D15438. Q43011. GO:0070981:L-asparagine biosynthetic process. GO:1904844: response to L-glutamine.	 Biochemical character	Os06g0265000	LOC_Os06g15420.1		0		GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity, GO:0005524 - ATP binding, GO:0006529 - asparagine biosynthetic process, GO:0006541 - glutamine metabolic process		PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0000071 - companion cell 
9308	GDH2	OsGDH2	GLUTAMATE DEHYDROGENASE 2	glutamate dehydrogenase 2	GLUTAMATE DEHYDROGENASE 2		4	AB189166.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0543900	LOC_Os04g45970.1, LOC_Os04g45970.2		0		GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0060359 - response to ammonium ion, GO:0004352 - glutamate dehydrogenase activity, GO:0006520 - cellular amino acid metabolic process, GO:0005507 - copper ion binding, GO:0004353 - glutamate dehydrogenase [NAD(P)+] activity, GO:0008270 - zinc ion binding, GO:0050897 - cobalt ion binding, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane		
9309	GDH3	OsGDH3	GLUTAMATE DEHYDROGENASE 3	glutamate dehydrogenase 3	GLUTAMATE DEHYDROGENASE 3		2	AB035927.	 Biochemical character	Os02g0650900	LOC_Os02g43470.1		0		GO:0005507 - copper ion binding, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0004353 - glutamate dehydrogenase [NAD(P)+] activity, GO:0050897 - cobalt ion binding, GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0004352 - glutamate dehydrogenase activity, GO:0006520 - cellular amino acid metabolic process		
9310	GLN1;3	OsGLN1;3, OsGS1;3, GS1;3	GLUTAMINE SYNTHETASE 1;3	cytosolic glutamine synthase 3, cytosolic glutamine synthethase 1;3, GLUTAMINE SYNTHETASE 1;3, glutamine synthetase 1;3	GLUTAMINE SYNTHETASE 1;3		3	AB180689. Q4W8D0.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf	Os03g0712800	LOC_Os03g50490.1		0		GO:0009507 - chloroplast, GO:0022626 - cytosolic ribosome, GO:0009399 - nitrogen fixation, GO:0004356 - glutamate-ammonia ligase activity, GO:0010150 - leaf senescence, GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0006542 - glutamine biosynthetic process, GO:0005507 - copper ion binding	TO:0000430 - germination rate, TO:0000249 - leaf senescence	PO:0009051 - spikelet , PO:0001054 - 4 leaf senescence stage 
9311	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1, OsGLU1	NADH-DEPENDENT GLUTAMATE SYNTHASE 1	NADH-glutamate synthase 1, glutamate synthase, NADH-glutamate synthase, NADH-Glu synthase, Glutamate synthase (NADPH) small chain, NADH-dependent glutamate synthase1, NADH-dependent glutamate synthase 1	NADH-DEPENDENT GLUTAMATE SYNTHASE 1	nadh-gogat1, OsGOGAT1-D1, OsGOGAT1-D2	1	AB008845, AB001916. Q0JKD0. D16060. AY427565 (promoter). GO:0097054:L-glutamate biosynthetic process. TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. GO:0071705: nitrogen compound transport. GO:1901698: response to nitrogen compound. GO:0090548: response to nitrate starvation.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0681900	LOC_Os01g48960.1		0		GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0048589 - developmental growth, GO:0006537 - glutamate biosynthetic process, GO:0031667 - response to nutrient levels, GO:0042594 - response to starvation, GO:0050660 - FAD binding, GO:0010167 - response to nitrate, GO:0016040 - glutamate synthase (NADH) activity, GO:0005506 - iron ion binding, GO:0060359 - response to ammonium ion, GO:0009507 - chloroplast, GO:0019676 - ammonia assimilation cycle, GO:0010181 - FMN binding, GO:0009536 - plastid, GO:0010157 - response to chlorate, GO:0019740 - nitrogen utilization, GO:0006995 - cellular response to nitrogen starvation	TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000329 - tillering ability, TO:0000371 - yield trait, TO:0000152 - panicle number, TO:0000598 - protein content	PO:0009005 - root , PO:0006343 - axillary shoot system , PO:0004709 - axillary bud 
9312	GLT2	OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2, GOGAT2, OsGLU2, GLU2	NADH-DEPENDENT GLUTAMATE SYNTHASE 2	NADH-glutamate synthase 2, NADH-dependent glutamate synthase2, NADH-dependent glutamate synthase 2	NADH-DEPENDENT GLUTAMATE SYNTHASE 2		5	AB274818. Q0DG35. GO:0097054:L-glutamate biosynthetic process. TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os05g0555600	LOC_Os05g48200.1		0		GO:0010150 - leaf senescence, GO:0010157 - response to chlorate, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0006537 - glutamate biosynthetic process, GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0019676 - ammonia assimilation cycle, GO:0016040 - glutamate synthase (NADH) activity, GO:0007584 - response to nutrient, GO:0010181 - FMN binding, GO:0006541 - glutamine metabolic process, GO:0050660 - FAD binding, GO:0046686 - response to cadmium ion, GO:0009570 - chloroplast stroma, GO:0005506 - iron ion binding, GO:0046688 - response to copper ion, GO:0010167 - response to nitrate	TO:0000021 - copper sensitivity, TO:0000249 - leaf senescence, TO:0000455 - seed set percent, TO:0000480 - nutrient sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000456 - spikelet number	PO:0009047 - stem , PO:0001054 - 4 leaf senescence stage , PO:0000048 - leaf lamina vascular system , PO:0020104 - leaf sheath , PO:0025034 - leaf 
9313	ABC1	OsABC1, SPL32, OsSPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT	ABNORMAL CYTOKININ RESPONSE 1	ferredoxin-glutamate synthase, ferredoxin-GOGAT, Ferredoxin-dependent Glu synthase, ferredoxin-dependent glutamate synthase, spotted leaf 32	FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE	spl32, abc1, abc1-1, abc1-2	7	AB024716, AB061357. AJ132280. Y12594. Q69RJ0. GO:0097054:L-glutamate biosynthetic process. GO:1900055: regulation of leaf senescence. GO:0072593: reactive oxygen species metabolic process. GO:1901668: regulation of superoxide dismutase activity. TO:0020093: nitrogen content. TO:0020098: nitrate sensitivity.	 Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0658400	LOC_Os07g46460.1		0		GO:0009409 - response to cold, GO:0042128 - nitrate assimilation, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0016041 - glutamate synthase (ferredoxin) activity, GO:0006520 - cellular amino acid metabolic process, GO:0006537 - glutamate biosynthetic process, GO:0080114 - positive regulation of glycine hydroxymethyltransferase activity, GO:0009853 - photorespiration, GO:0009570 - chloroplast stroma, GO:0009416 - response to light stimulus, GO:0042742 - defense response to bacterium, GO:0010167 - response to nitrate, GO:0006541 - glutamine metabolic process, GO:0005739 - mitochondrion, GO:0016020 - membrane, GO:0060359 - response to ammonium ion, GO:0048046 - apoplast, GO:0031347 - regulation of defense response, GO:0019676 - ammonia assimilation cycle, GO:0009941 - chloroplast envelope, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization, GO:0019740 - nitrogen utilization, GO:0080093 - regulation of photorespiration, GO:0042744 - hydrogen peroxide catabolic process, GO:0046872 - metal ion binding	TO:0000346 - tiller number, TO:0000495 - chlorophyll content, TO:0000075 - light sensitivity, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content, TO:0000466 - carbon content, TO:0000340 - total soluble sugar content, TO:0000207 - plant height, TO:0000063 - mimic response, TO:0000326 - leaf color, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0002673 - amino acid content	PO:0001054 - 4 leaf senescence stage 
9314	SULTR1;1	OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b)	SULPHATE TRANSPORTER 1;1	sulphate transporter 1;1, arsenic-responsive high affinity sulfate transporter, sulfate transporter 1;1	_		3	GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0195800	LOC_Os03g09970.2, LOC_Os03g09970.1, LOC_Os03g09970.4, LOC_Os03g09970.3		0		GO:0009628 - response to abiotic stimulus, GO:0010039 - response to iron ion, GO:0016021 - integral to membrane, GO:0010038 - response to metal ion, GO:0009409 - response to cold, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0010288 - response to lead ion, GO:0009970 - cellular response to sulfate starvation, GO:0009651 - response to salt stress, GO:0042594 - response to starvation, GO:0010035 - response to inorganic substance, GO:0046685 - response to arsenic, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000034 - chromium sensitivity, TO:0000007 - sulfur sensitivity, TO:0000276 - drought tolerance, TO:0000031 - silicon sensitivity, TO:0000224 - iron sensitivity, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance	PO:0020148 - shoot apical meristem , PO:0009005 - root , PO:0009072 - plant ovary 
9315	SULTR1;2	OsSultr1;2, OsSul1;2	SULPHATE TRANSPORTER 1;2	sulphate transporter 1;2	SULPHATE TRANSPORTER 1;2		3		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os03g0196000	LOC_Os03g09980.1		0		GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0009970 - cellular response to sulfate starvation, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0046685 - response to arsenic, GO:0009651 - response to salt stress, GO:0010288 - response to lead ion, GO:0002242 - defense response to parasitic plant, GO:0010035 - response to inorganic substance, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000031 - silicon sensitivity, TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance, TO:0000007 - sulfur sensitivity	PO:0009005 - root 
9316	SULTR1;3	OsSultr1;3, OsSul1;3	SULPHATE TRANSPORTER 1;3	sulphate transporter 1;3	_		8	LOC_Os08g31410.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0406400	LOC_Os08g31410.1, LOC_Os08g31410.2, LOC_Os08g31410.3, LOC_Os08g31410.4, LOC_Os08g31410.5, LOC_Os08g31410.6, LOC_Os08g31410.7		0		GO:0016021 - integral to membrane, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0010288 - response to lead ion, GO:0005886 - plasma membrane, GO:0002242 - defense response to parasitic plant, GO:0046685 - response to arsenic, GO:0048316 - seed development, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0025034 - leaf 
9318	SULTR2;1	OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2	SULPHATE TRANSPORTER 2;1	sulphate transporter 2;1	_		3	A phosphate starvation responsive sequence (PHR1- binding sequence) was identified in promoter (Kumar et al. 2015). OsaSULTR2 in Yuan et al. 2016. a predicted target gene of OsamiR395.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0195500/Os03g0195450	LOC_Os03g09940.1		0		GO:0042594 - response to starvation, GO:0046685 - response to arsenic, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0009970 - cellular response to sulfate starvation, GO:0010269 - response to selenium ion, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0010035 - response to inorganic substance, GO:0016021 - integral to membrane, GO:0002242 - defense response to parasitic plant, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000034 - chromium sensitivity, TO:0000032 - selenium sensitivity, TO:0000074 - blast disease, TO:0000031 - silicon sensitivity, TO:0000007 - sulfur sensitivity, TO:0006001 - salt tolerance	PO:0009005 - root 
9319	SULTR2;2	OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1	SULPHATE TRANSPORTER 2;2	sulphate transporter 2;2	_		3	LOC_Os03g09930. LOC4331932 (Os03g0195300/Os03g0195400). OsaSULTR2;1 in Yuan et al. 2016, Zheng et al. 2017. a predicted target gene of OsamiR395.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Biochemical character	Os03g0195300	LOC_Os03g09930.1, LOC_Os03g09930.2		0		GO:0046685 - response to arsenic, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0002242 - defense response to parasitic plant, GO:0046686 - response to cadmium ion, GO:0010438 - cellular response to sulfur starvation, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009970 - cellular response to sulfate starvation, GO:0010288 - response to lead ion, GO:0010035 - response to inorganic substance, GO:0046688 - response to copper ion, GO:0008271 - secondary active sulfate transmembrane transporter activity	TO:0000007 - sulfur sensitivity, TO:0000031 - silicon sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000021 - copper sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009072 - plant ovary , PO:0020148 - shoot apical meristem 
9320	SULTR3;1	OsSultr3;1, OsSul3;1	SULPHATE TRANSPORTER 3;1	sulphate transporter 3;1	_		10	LOC_Os10g28440. A phosphate starvation responsive sequence (PHR1- binding sequence) was identified in promoter (Kumar et al. 2015).	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os10g0420400	LOC_Os10g28440.1		0		GO:0010288 - response to lead ion, GO:0009651 - response to salt stress, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0002242 - defense response to parasitic plant, GO:0046685 - response to arsenic, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0009409 - response to cold, GO:0009507 - chloroplast	TO:0000653 - seed development trait, TO:0000303 - cold tolerance, TO:0000034 - chromium sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009073 - stigma , PO:0009005 - root , PO:0001170 - seed development stage , PO:0025034 - leaf 
9321	SULTR3;2	OsSultr3;2, OsSul3;2	SULPHATE TRANSPORTER 3;2	sulphate transporter 3;2	_		3	LOC_Os03g06520. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0161200	LOC_Os03g06520.1, LOC_Os03g06520.2		0		GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0046685 - response to arsenic, GO:0010039 - response to iron ion, GO:0010288 - response to lead ion, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0009651 - response to salt stress	TO:0000224 - iron sensitivity, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009005 - root , PO:0001170 - seed development stage , PO:0009073 - stigma 
9322	LPA	OsSultr3;3, OsSul3;3, SULTR3;3	LOW PHYTIC ACID 	sulphate transporter 3;3, low phytic acid	SULPHATE TRANSPORTER 3;3	lap, ossultr3;3	4	LOC_Os04g55800. KT188446, KT188447. TO:0006045 phosphorus concentration. TO:0006046 sulfur concentration. TO:0020102 phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os04g0652400	LOC_Os04g55800.1		0		GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0032958 - inositol phosphate biosynthetic process, GO:0055063 - sulfate ion homeostasis, GO:0048316 - seed development, GO:0046685 - response to arsenic, GO:0005783 - endoplasmic reticulum, GO:0006790 - sulfur metabolic process, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0006797 - polyphosphate metabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000653 - seed development trait, TO:0000488 - seed composition based quality trait, TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009073 - stigma , PO:0001170 - seed development stage , PO:0009005 - root , PO:0025034 - leaf 
9323	SULTR3;4	OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT, OsSPDT	SULPHATE TRANSPORTER 3;4	sulphate transporter 3;4, SULTR-like phosphorus distribution transporter	_	spdt, spdt-1, spdt-2, spdt-3	6	A phosphate starvation responsive sequence (PHR1- binding sequence) was identified in promoter (Kumar et al. 2015). a predicted target gene of OsamiR395. a plasma membrane-localized transporter for phosphorus. GO:0110126: phloem loading. TO:0020089: iron content trait. TO:0020090: zinc content trait.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0143700	LOC_Os06g05160.1		0		GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005887 - integral to plasma membrane, GO:0015116 - sulfate transmembrane transporter activity, GO:0046685 - response to arsenic, GO:0048316 - seed development, GO:0010233 - phloem transport, GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0009506 - plasmodesma, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0009970 - cellular response to sulfate starvation, GO:0010288 - response to lead ion, GO:0009414 - response to water deprivation	TO:0000034 - chromium sensitivity, TO:0000465 - mineral and ion content related trait, TO:0000303 - cold tolerance, TO:0000007 - sulfur sensitivity, TO:0002666 - seed phosphorus content, TO:0006001 - salt tolerance, TO:0001025 - leaf phosphorus content, TO:0000653 - seed development trait, TO:0001024 - phosphorus content, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0009047 - stem , PO:0020103 - flag leaf , PO:0008039 - stem base , PO:0007632 - seed maturation stage , PO:0020141 - stem node , PO:0009005 - root , PO:0025034 - leaf , PO:0005352 - xylem , PO:0009073 - stigma , PO:0001170 - seed development stage 
9324	SULTR3;5	OsSultr3;5, OsSul3;5	SULPHATE TRANSPORTER 3;5	sulphate transporter 3;5	_		1	LOC_Os01g41050.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0593700	LOC_Os01g41050.1		0		GO:0009409 - response to cold, GO:0048316 - seed development, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0008271 - secondary active sulfate transmembrane transporter activity	TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0009005 - root , PO:0009073 - stigma 
9325	SULTR3;6	OsSultr3;6, OsSul3;6, OsSULTR3;6	SULPHATE TRANSPORTER 3;6	sulphate transporter 3;6	_	Ossultr3;6	1		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0719300	LOC_Os01g52130.1		0		GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0010438 - cellular response to sulfur starvation	TO:0000276 - drought tolerance, TO:0000007 - sulfur sensitivity, TO:0000203 - bacterial leaf streak disease resistance, TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0009005 - root , PO:0025034 - leaf , PO:0009073 - stigma , PO:0001170 - seed development stage 
9326	SULTR4;1	OsSultr4;1, OsSul4;1, OsSultr4;1(a), OsSultr4;1(b), OsSultr4;1(c), OsSultr4;1(d)	SULPHATE TRANSPORTER 4;1	sulphate transporter 4;1	_		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0240500	LOC_Os09g06499.1, LOC_Os09g06499.2		0		GO:0008271 - secondary active sulfate transmembrane transporter activity, GO:0048316 - seed development, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0010288 - response to lead ion, GO:0009970 - cellular response to sulfate starvation, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000007 - sulfur sensitivity	PO:0001170 - seed development stage , PO:0025034 - leaf 
9327	SULTR5;1	OsSultr5;1, OsSul5;1, OsMOT1;2, MOT1;2	SULPHATE TRANSPORTER 5;1	sulphate transporter 5;1, molybdate transporter 1;2	_	osmot1;2	1	GO:0090414: molybdate ion export from vacuole. GO:0090550: response to molybdenum starvation. GO:0120127: response to zinc ion starvation. GO:1990641: response to iron ion starvation. GO:0120126: response to copper ion starvation. TO:0006056: molybdenum content. TO:1000040: root system molybdenum content. TO:1000065: shoot system molybdenum content. TO:0006052: copper concentration. TO:0006056: molybdenum content. TO:0006053: zinc concentration. TO:0006045: phosphorus concentration. TO:0006051: nickel content. TO:0020091: manganese content.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0645900	LOC_Os01g45830.1		0		GO:0006825 - copper ion transport, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0010288 - response to lead ion, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009705 - plant-type vacuole membrane, GO:0015689 - molybdate ion transport, GO:0005774 - vacuolar membrane, GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity, TO:0000465 - mineral and ion content related trait, TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000007 - sulfur sensitivity, TO:0000351 - zinc sensitivity, TO:0000025 - molybdenum sensitivity, TO:0000224 - iron sensitivity, TO:0000021 - copper sensitivity, TO:0000609 - potassium content	PO:0006325 - inflorescence node , PO:0009053 - peduncle , PO:0001170 - seed development stage , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0020141 - stem node 
9328	SULTR5;2	OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8, MOT1	SULPHATE TRANSPORTER 5;2	sulphate transporter 5;2, MOLYBDATE TRANSPORTER1;1, MOLYBDATE TRANSPORTER 1;1	_	osmot1;1	8	TO:0006056: molybdenum content. QTL qGMo8 that controls the variation in grain Mo concentration encodes a molybdate transporter OsMOT1;1 (Huang et al. 2019). GO:0090550: response to molybdenum starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os08g0101500	LOC_Os08g01120.1		0		GO:0046685 - response to arsenic, GO:0048316 - seed development, GO:0016021 - integral to membrane, GO:0015098 - molybdate ion transmembrane transporter activity, GO:0002242 - defense response to parasitic plant, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion	TO:0000034 - chromium sensitivity, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000025 - molybdenum sensitivity, TO:0000276 - drought tolerance	PO:0001170 - seed development stage , PO:0009005 - root 
9330	CML19	OsCML19	CALMODULIN-LIKE PROTEIN 19	calmodulin-like protein 19	CALMODULIN-LIKE PROTEIN 19		1	Q8RYJ8.		Os01g0955500	LOC_Os01g72550.1		0		GO:0005509 - calcium ion binding		
9331	CML23	OsCML23	CALMODULIN-LIKE PROTEIN 23	calmodulin-like protein 23	CALMODULIN-LIKE PROTEIN 23		1	Q8RYJ9.		Os01g0955400 	LOC_Os01g72540.1		0		GO:0005509 - calcium ion binding		
9332	CML25	OsCML25	CALMODULIN-LIKE PROTEIN 25	calmodulin-like protein 25	CALMODULIN-LIKE PROTEIN 25		11	Q2QYW1.		Os11g0105000	LOC_Os11g01390.1		0		GO:0005509 - calcium ion binding		
9333	CML26	OsCML26	CALMODULIN-LIKE PROTEIN 26	calmodulin-like protein 26	CALMODULIN-LIKE PROTEIN 26		12	Q2QYW1.		Os12g0104900 	LOC_Os12g01400.1		0		GO:0005509 - calcium ion binding		
9334	CAM1-1	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1, OsCAM1.1, CAM1.1	CALMODULIN 1-1	calmodulin 1, calmodulin 1-1, calmodulin 3	CALMODULIN 1-1		3	Q0JNS6. CAM3 in Zhang et al. 2013. GO:2000280: regulation of root development. TO:0020106: Indole-3-acetic acid content. GO:0061891: calcium ion sensor activity.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0319300	LOC_Os03g20370.1		0		GO:0005886 - plasma membrane, GO:0009734 - auxin mediated signaling pathway, GO:0005737 - cytoplasm, GO:0009846 - pollen germination, GO:0010099 - regulation of photomorphogenesis, GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0005773 - vacuole, GO:0051592 - response to calcium ion, GO:0019722 - calcium-mediated signaling, GO:0005509 - calcium ion binding, GO:0005634 - nucleus	TO:0000328 - sucrose content, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000516 - relative root length, TO:0000696 - starch content, TO:0002672 - auxin content	PO:0007520 - root development stage 
9335	_	OsCaM3, OsCam3, CaM3	_	calmodulin 3	_		1	Q0JNL7.	 Biochemical character	Os01g0279300	LOC_Os01g17190.1		0		GO:0005509 - calcium ion binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0010099 - regulation of photomorphogenesis, GO:0009846 - pollen germination, GO:0019722 - calcium-mediated signaling		
9336	VTE1	OsVTE1	VITAMIN E DEFICIENT 1	tocopherol cyclase	TOCOPHEROL CYCLASE		2	Q6K7V6. vitamin E biosynthetic enzyme.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0276500	LOC_Os02g17650.1, LOC_Os02g17650.2		0		GO:0006979 - response to oxidative stress, GO:0009416 - response to light stimulus, GO:0009534 - chloroplast thylakoid, GO:0009706 - chloroplast inner membrane, GO:0016122 - xanthophyll metabolic process, GO:0010189 - vitamin E biosynthetic process, GO:0009651 - response to salt stress, GO:0010287 - plastoglobule, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0009915 - phloem loading, GO:0031347 - regulation of defense response, GO:0009266 - response to temperature stimulus, GO:0006631 - fatty acid metabolic process, GO:0015994 - chlorophyll metabolic process, GO:0009976 - tocopherol cyclase activity	TO:0000075 - light sensitivity, TO:0002657 - oxidative stress	
9337	EXPB5	OsEXPB5, osaEXPb1.19	BETA-EXPANSIN 5	expansin B5, Expansin-B5, Beta-expansin-5	BETA-EXPANSIN 5		4	AF261273, AY039024. Q7XT39.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0552200	LOC_Os04g46650.1		0		GO:0016020 - membrane, GO:0007047 - cell wall organization, GO:0005576 - extracellular region, GO:0019953 - sexual reproduction, GO:0005618 - cell wall, GO:0034059 - response to anoxia		
9338	EXPB6	OsEXPB6, osaEXPb1.8, EXPb1.8	BETA-EXPANSIN 6	Expansin-B6, Beta-expansin-6	BETA-EXPANSIN 6		10	AF261274(cDNA), AC037426?(genomic). Q7XCA7.	 Biochemical character,  Vegetative organ - Culm	Os10g0555600	LOC_Os10g40700.1		0		GO:0005618 - cell wall, GO:0019953 - sexual reproduction, GO:0005576 - extracellular region, GO:0016020 - membrane	TO:0000207 - plant height	
9339	EXPB7	OsEXPB7, osaEXPb1.12	BETA-EXPANSIN 7	Expansin-B7, Beta-expansin-7	BETA-EXPANSIN 7		3	AF261275. Q9LD07.	 Biochemical character	Os03g0102700	LOC_Os03g01270.2, LOC_Os03g01270.1		0		GO:0005576 - extracellular region, GO:0019953 - sexual reproduction, GO:0016020 - membrane, GO:0001558 - regulation of cell growth, GO:0005618 - cell wall		
9340	EXPB8		BETA-EXPANSIN 8		BETA-EXPANSIN 8		3	AF261276. Q10T32. GO:0071555: cell wall organization.	 Biochemical character	Os03g0102500	LOC_Os03g01260.1		0		GO:0019953 - sexual reproduction, GO:0016020 - membrane, GO:0005618 - cell wall, GO:0005576 - extracellular region		
9341	EXPB9	OsEXPB9, osaEXPb1.6	BETA-EXPANSIN 9	Expansin-B9, Beta-expansin-9	BETA-EXPANSIN 9		10	Q7XCG7.	 Biochemical character	Os10g0548600	LOC_Os10g40090.1		0		GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0019953 - sexual reproduction		
9342	EXPB10	OsEXPB10, osaEXPb1.5	BETA-EXPANSIN 10	Expansin-B10, Beta-expansin-10	BETA-EXPANSIN 10		3	Q8H7T4.	 Biochemical character	Os03g0106800	LOC_Os03g01640.1		0		GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0019953 - sexual reproduction, GO:0016020 - membrane		
9343	EXPB11	OsEXPB11, osaEXPb1.20	BETA-EXPANSIN 11	Expansin-B11, Beta-expansin-11	BETA-EXPANSIN 11		2	Q6H676.	 Biochemical character	Os02g0658800	LOC_Os02g44108.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0019953 - sexual reproduction		
9344	EXPB12		BETA-EXPANSIN 12		BETA-EXPANSIN 12				 Biochemical character				0				
9345	EXPB13	OsEXPB13, osaEXPb1.4p	BETA-EXPANSIN 13	Expansin-B13, Beta-expansin-13	BETA-EXPANSIN 13		3	Q946J4.	 Biochemical character	Os03g0106700	LOC_Os03g01630.1		0		GO:0005618 - cell wall, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0019953 - sexual reproduction		
9346	EXPB14	OsEXPB14, osaEXPb1.18	BETA-EXPANSIN 14	Expansin-B14, Beta-expansin-14	BETA-EXPANSIN 14		2	Q6H677.	 Biochemical character	Os02g0658600	LOC_Os02g44106.1		0		GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0019953 - sexual reproduction		
9348	_	OsGR-RBP4	_	glycine-rich RNA binding protein4	_	Osgr-rbp4			 Biochemical character				0				
9349	_	OsFKBP20	_	FK506 binding protein 20	_				 Biochemical character				0				
9350	_	DREB2B	_	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2B	_				 Tolerance and resistance - Stress tolerance				0				
9351	GLYI1	OsGLYI1	GLYOXALASE I-1	glyoxalase I-1	GLYOXALASE I-1		1		 Biochemical character	Os01g0173600 	LOC_Os01g07850.1		0				
9352	GLYI2	OsGLYI2	GLYOXALASE I-2	glyoxalase I-2	GLYOXALASE I-2		2		 Biochemical character	Os02g0280500 	LOC_Os02g17920.1		0				
9353	GLYI3	OsGLYI3	GLYOXALASE I-3	glyoxalase I-3	GLYOXALASE I-3		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0277500 	LOC_Os03g16940.1		0				
9354	GLYI4	OsGLYI4	GLYOXALASE I-4	glyoxalase I-4	GLYOXALASE I-4		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0659300 	LOC_Os03g45720.1		0		GO:0009408 - response to heat	TO:0000259 - heat tolerance	
9355	GLYI5	OsGLYI5	GLYOXALASE I-5	glyoxalase I-5	GLYOXALASE I-5		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0538900 	LOC_Os04g45590.1		0				
9356	GLYI6	OsGLYI6, OsGLYI6.1, OsGLYI6.2, OsGLYI6.3, OsGLYI6.4, OsGLYI6.5	GLYOXALASE I-6	glyoxalase I-6	GLYOXALASE I-6		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0171900 	LOC_Os05g07940.1, LOC_Os05g07940.2, LOC_Os05g07940.3, LOC_Os05g07940.4, LOC_Os05g07940.5		0				
9357	GLYI7	OsGLYI7, OsGLYI7.1, OsGLYI7.2	GLYOXALASE I-7	glyoxalase I-7	GLYOXALASE I-7		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0230900 	LOC_Os05g14194.1, LOC_Os05g14194.2		0				
9358	GLYI8	OsGLYI8, OsGLYI-8, GLYI-8	GLYOXALASE I-8	glyoxalase I-8, glyoxalase I enzyme 8	GLYOXALASE I-8		5	EEC78918.1 (indica). rice ortholog of AtGLYI-2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0295800 	LOC_Os05g22970.1		0		GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0046686 - response to cadmium ion, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0051596 - methylglyoxal catabolic process, GO:0010224 - response to UV-B, GO:0004462 - lactoylglutathione lyase activity, GO:0005829 - cytosol, GO:0009507 - chloroplast	TO:0000601 - UV-B light sensitivity	
9359	GLYI9	OsGLYI9, OsGLYI9.1, OsGLYI9.2	GLYOXALASE I-9	glyoxalase I-9	GLYOXALASE I-9		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0160400 	LOC_Os07g06660.1, LOC_Os07g06660.2		0				
9360	GLYI10	OsGLYI10, OsEnS-113	GLYOXALASE I-10	glyoxalase I-10, endosperm-specific gene 113	GLYOXALASE I-10		7	LOC_Os07g46360.	 Biochemical character	Os07g0657100 	LOC_Os07g46360.1		0				
9361	GLYI-11	OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33	GLYOXALASE I-11	glyoxalase I-11, 33-kDa Allergen	GLYOXALASE I-11		8	AB017042. Q948T6.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0191700 	LOC_Os08g09250.1, LOC_Os08g09250.2, LOC_Os08g09250.3		0		GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004462 - lactoylglutathione lyase activity, GO:0046688 - response to copper ion, GO:0019863 - IgE binding, GO:0016151 - nickel ion binding, GO:0019243 - methylglyoxal catabolic process to D-lactate	TO:0000021 - copper sensitivity, TO:0000168 - abiotic stress trait	PO:0009010 - seed , PO:0009047 - stem , PO:0025034 - leaf 
9362	GLYII-1	OsGLYII1, GLYII1, OsETHE1, ETHE1, OsGLYII-1	GLYOXALASE II-1	glyoxalase II-1, ETHYLMALONIC ENCEPHALOPATHY PROTEIN 1, ETHE1-like protein, ethylmalonic encephalopathy-1	GLYOXALASE II-1		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0667200 	LOC_Os01g47690.1, LOC_Os01g47690.2		0			TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000394 - drought related trait, TO:0000429 - salt sensitivity	
9363	GLYII-2	OsGLYII2, GLYII2, OsGLYII-2	GLYOXALASE II-2	glyoxalase II-2	GLYOXALASE II-2		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0332400 	LOC_Os03g21460.1		0		GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0006950 - response to stress, GO:0004416 - hydroxyacylglutathione hydrolase activity, GO:0009651 - response to salt stress, GO:0005829 - cytosol	TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance	
9364	GLYII-3	OsGLYII3, GLYII3, gly II, OsGLYII-3	GLYOXALASE II-3	glyoxalase II-3, glyoxalase II	GLYOXALASE II-3		9	glyoxalase II in Singla-Pareek et al. 2003. AY054407.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0516600 	LOC_Os09g34100.1		0		GO:0005506 - iron ion binding, GO:0006750 - glutathione biosynthetic process, GO:0004416 - hydroxyacylglutathione hydrolase activity, GO:0009507 - chloroplast, GO:0008270 - zinc ion binding, GO:0008800 - beta-lactamase activity		
9365	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3, DLN131, OsDLN131, OsPHD23, PHD23	_	SAP and MIZ 1, SUMO ligase Siz1, Siz/PIAS-type SUMO ligase 1, SIZ/PIAS-type SUMO E3 ligase 1, E3 SUMO-protein ligase SIZ1, DLN repressor 131, DLN motif protein 131, Plant homeo-domain finger protein 23, PHD finger protein 23	_	Ossiz1, ossiz1, siz1	5	BGIOSGA019093. B8AXJ3 (indica). SUMO E3 ligase, homolog of  Arbidopsis SIZ. Q6L4L4. GO:0120194: regulation of anther dehiscence.	 Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os05g0125000	LOC_Os05g03430.3, LOC_Os05g03430.2, LOC_Os05g03430.1		0		GO:0009651 - response to salt stress, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0008270 - zinc ion binding, GO:0009408 - response to heat, GO:0016874 - ligase activity, GO:0009414 - response to water deprivation, GO:0009901 - anther dehiscence	TO:0000342 - panicle axis angle, TO:0000615 - abscisic acid sensitivity, TO:0000455 - seed set percent, TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000146 - seed length, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	
9366	SIZ2	OsSIZ2	_	SAP and MIZ 2, SIZ/PIAS-type SUMO E3 ligase 2	_	Ossiz2, ossiz2	3	SUMO E3 ligase, homolog of Arbidopsis SIZ. Q6ASW7. GO:2000070:regulation of response to water deprivation. GO:1901698: response to nitrogen compound.	 Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0719100	LOC_Os03g50980.1		0		GO:0009901 - anther dehiscence, GO:0003676 - nucleic acid binding, GO:0009409 - response to cold, GO:0016049 - cell growth, GO:0040008 - regulation of growth, GO:0051301 - cell division, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0048653 - anther development, GO:0009910 - negative regulation of flower development, GO:0016925 - protein sumoylation, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0008270 - zinc ion binding, GO:0050826 - response to freezing, GO:0048316 - seed development, GO:0019789 - SUMO ligase activity, GO:0010337 - regulation of salicylic acid metabolic process	TO:0000146 - seed length, TO:0000455 - seed set percent, TO:0006001 - salt tolerance, TO:0000421 - pollen fertility, TO:0000303 - cold tolerance, TO:0000653 - seed development trait	PO:0001004 - anther development stage , PO:0001170 - seed development stage , PO:0025034 - leaf 
9367	EXPA5	OsEXPA5, OsEXP5, osaEXPa1.20	ALPHA-EXPANSIN 5	Rice expansin-5, Expansin-A5, Alpha-expansin-5	ALPHA-EXPANSIN 5		2	AF394546. Q6ZGU9.		Os02g0744200	LOC_Os02g51040.1		0		GO:0005576 - extracellular region, GO:0001558 - regulation of cell growth, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall		
9368	EXPA6	OsEXPA6, OsEXP6, osaEXPa1.24	ALPHA-EXPANSIN 6	Rice expansin-6, Expansin-A6, Alpha-expansin-6, Expansin S1	ALPHA-EXPANSIN 6		3	Q9M4X7.	 Tolerance and resistance - Stress tolerance	Os03g0336400	LOC_Os03g21820.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0006949 - syncytium formation, GO:0009266 - response to temperature stimulus, GO:0009664 - plant-type cell wall organization	TO:0000432 - temperature response trait	
9369	EXPA8		ALPHA-EXPANSIN 8		ALPHA-EXPANSIN 8								0				
9371	EXPA9	OsEXPA9, OsEXP9, osaEXPa1.19	ALPHA-EXPANSIN 9	Rice expansin-9, Expansin-A9, Alpha-expansin-9	ALPHA-EXPANSIN 9		1	Q4PR53.		Os01g0249100	LOC_Os01g14660.1		0		GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization		
9372	EXPA10	OsEXPA10, OsEXP10, osaEXPa1.28	ALPHA-EXPANSIN 10	Expansin-A10	ALPHA-EXPANSIN 10		4	Q7XUD0. GO:1900366: negative regulation of defense response to insect. GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os04g0583500	LOC_Os04g49410.1		0		GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0016020 - membrane, GO:0010044 - response to aluminum ion, GO:0048364 - root development, GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0009751 - response to salicylic acid stimulus, GO:0009826 - unidimensional cell growth, GO:0009723 - response to ethylene stimulus	TO:0000397 - grain size, TO:0000424 - brown planthopper resistance, TO:0000656 - root development trait, TO:0000227 - root length, TO:0000306 - root thickness, TO:0000734 - grain length, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000145 - internode length, TO:0000207 - plant height, TO:0000173 - ethylene sensitivity, TO:0000354 - aluminum sensitivity, TO:0000592 - 1000-dehulled grain weight, TO:0000615 - abscisic acid sensitivity	PO:0000025 - root tip , PO:0009005 - root , PO:0007520 - root development stage 
9374	EXPA11	OsEXPA11, OsEXP11, osaEXPa1.25	ALPHA-EXPANSIN 11	expansin A11, Rice expansin-11, Expansin-A11, Alpha-expansin-11	ALPHA-EXPANSIN 11		1	Q4PNY1.	 Vegetative organ - Root	Os01g0274500	LOC_Os01g16770.1		0		GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005618 - cell wall		
9375	EXPA12	OsEXPA12, OsEXP12, osaEXPa1.15	ALPHA-EXPANSIN 12	expansin A12, Rice expansin-12, Expansin-A12, Alpha-expansin-12	ALPHA-EXPANSIN 12		3	AF394548. Q7G6Z2.	 Vegetative organ - Root	Os03g0155300	LOC_Os03g06000.1		0		GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005576 - extracellular region		
9376	EXPA13	OsEXPA13, OsEXP13, osaEXPa1.13	ALPHA-EXPANSIN 13	expansin A13, Rice expansin-13, Expansin-A13, Alpha-expansin-13	ALPHA-EXPANSIN 13		2	AF394549. Q4PR52.	 Vegetative organ - Root	Os02g0267200	LOC_Os02g16730.1		0		GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall		
9377	EXPA14	OsEXPA14, OsEXP14, osaEXPa1.11	ALPHA-EXPANSIN 14	Rice expansin-14, Expansin-A14, Alpha-expansin-14	ALPHA-EXPANSIN 14		2	AF394550. Q4PR51.		Os02g0267700	LOC_Os02g16780.1		0		GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization		
9378	EXPA15	OsEXPA15, OsEXP15, osaEXPa1.8	ALPHA-EXPANSIN 15	expansin A15, Rice expansin-15, Expansin-A15, Alpha-expansin-15	ALPHA-EXPANSIN 15		3	AF394551. Q4PR50. LOC_Os03g06020. Os03g0155600 (in Uniprot).	 Vegetative organ - Root	Os03g0155700	LOC_Os03g06020.1		0		GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane		
9379	EXPA16	OsEXPA16, OsEXP16, osaEXPa1.27	ALPHA-EXPANSIN 16	Rice expansin-16, Expansin-A16, Alpha-expansin-16	ALPHA-EXPANSIN 16		6	LOC_Os06g41700. AF394552. Q69XV9.		Os06g0621900	LOC_Os06g41700.1		0		GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane		
9380	EXPA17	OsEXPA17, OsEXP17, osaEXPa1.31	ALPHA-EXPANSIN 17	expansin A17	ALPHA-EXPANSIN 17	OsexpA17, expa17	6	DQ061058. Q4PR49.	 Vegetative organ - Root	Os06g0108600 	LOC_Os06g01920.1		0		GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane	TO:0002665 - root hair length	
9381	EXPA18	OsEXPA18, OsEXP18, osaEXPa1.3	ALPHA-EXPANSIN 18	Rice expansin-18, Expansin-A18, Alpha-expansin-18	ALPHA-EXPANSIN 18		3	AF394553. Q4PR48.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0155900	LOC_Os03g06040.1		0		GO:0010044 - response to aluminum ion, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0009737 - response to abscisic acid stimulus, GO:0010269 - response to selenium ion, GO:0048364 - root development	TO:0000227 - root length, TO:0000656 - root development trait, TO:0000306 - root thickness, TO:0000615 - abscisic acid sensitivity, TO:0000032 - selenium sensitivity, TO:0000354 - aluminum sensitivity	PO:0009005 - root , PO:0007520 - root development stage 
9382	EXPA19	OsEXPA19, OsEXP19, osaEXPa1.2	ALPHA-EXPANSIN 19	Rice expansin-19, Expansin-A19, Alpha-expansin-19	ALPHA-EXPANSIN 19		3	AF394554. Q7G6Z5.		Os03g0156000	LOC_Os03g06050.1		0		GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005618 - cell wall, GO:0005576 - extracellular region		
9383	EXPA20	OsEXPA20, OsEXP20, osaEXPa1.1	ALPHA-EXPANSIN 20	Rice expansin-20, Expansin-A20, Alpha-expansin-20	ALPHA-EXPANSIN 20		3	AF394555. Q10RK1.	 Tolerance and resistance - Stress tolerance	Os03g0156300	LOC_Os03g06060.1		0		GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0010044 - response to aluminum ion, GO:0009664 - plant-type cell wall organization	TO:0000354 - aluminum sensitivity	
9384	EXPA21	OsEXPA21, OsEXP21, osaEXPa1.21	ALPHA-EXPANSIN 21	Rice expansin-21, Expansin-A21, Alpha-expansin-21	ALPHA-EXPANSIN 21		3	AF394556. Q10KN4.		Os03g0377100	LOC_Os03g25990.1		0		GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region, GO:0016020 - membrane		
9385	EXPA22	OsEXPA22, OsEXP22, osaEXPa1.9	ALPHA-EXPANSIN 22	expansin A22, Rice expansin-22, Expansin-A22, Alpha-expansin-22	ALPHA-EXPANSIN 22		2	AF394557. Q4PR44.	 Vegetative organ - Root	Os02g0268600	LOC_Os02g16850.1		0		GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization		
9386	ERF93	OsERF1, ERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168	ETHYLENE RESPONSE FACTOR 93	ethylene response factor 1, ethylene responsive factor 1, ethylene response factor 93, APETALA2/ethylene-responsive element binding protein 168	ETHYLENE RESPONSE FACTOR 93		4	EF061888. BF889454. ERF1 in Hu et al. 2008, Feng et al. 2020, Yu et al. 2021.	 Vegetative organ - Root	Os04g0546800	LOC_Os04g46220.1		0		GO:0009873 - ethylene mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity	
9387	EXPA23	OsEXPA23, OsEXP23, osaEXPa1.12	ALPHA-EXPANSIN 23	Rice expansin-23, Expansin-A23, Alpha-expansin-23	ALPHA-EXPANSIN 23		2	AF394558. Q4PR43 (Os02g0268000).		Os02g0268050	LOC_Os02g16839.1		0		GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0016020 - membrane		
9388	EXPA24	OsEXPA24, OsEXP24, osaEXPa1.10	ALPHA-EXPANSIN 24	Rice expansin-24, Expansin-A24, Alpha-expansin-24	ALPHA-EXPANSIN 24		2	AF394559. Q4PR42.		Os02g0267900	LOC_Os02g16800.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane, GO:0009664 - plant-type cell wall organization		
9389	EXPA25	OsEXPA25, OsEXP25, osaEXPa1.6	ALPHA-EXPANSIN 25	Rice expansin-25, Expansin-A25, Alpha-expansin-25	ALPHA-EXPANSIN 25		3	AF394560. Q4PR41.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0155500	LOC_Os03g06010.1		0		GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0009737 - response to abscisic acid stimulus, GO:0005618 - cell wall, GO:0048364 - root development, GO:0010044 - response to aluminum ion, GO:0009664 - plant-type cell wall organization	TO:0000656 - root development trait, TO:0000306 - root thickness, TO:0000615 - abscisic acid sensitivity, TO:0000354 - aluminum sensitivity, TO:0000227 - root length	PO:0007520 - root development stage , PO:0009005 - root 
9390	EXPA26	EXPA26, OsEXP26, osaEXPa1.29	ALPHA-EXPANSIN 26	Rice expansin-26, Expansin-A26, Alpha-expansin-26	ALPHA-EXPANSIN 26		12	AF394561. Q2QP13.		Os12g0546800	LOC_Os12g36040.1		0		GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0001558 - regulation of cell growth		
9393	EXPL3		EXPANSIN-LIKE 3		EXPANSIN-LIKE 3		7	AY100694. Q8H274.		Os07g0475400	LOC_Os07g29290.1		0		GO:0048856 - anatomical structure development, GO:0005576 - extracellular region		
9394	EXPR1	Os-EXPR1, OsEXPR1	EXPANSIN-RELATED 1		EXPANSIN-RELATED 1		7	Q850K7.		Os07g0496250	LOC_Os07g31390.1		0		GO:0005576 - extracellular region, GO:0009653 - anatomical structure morphogenesis		
9395	EXPA28		ALPHA-EXPANSIN 28		ALPHA-EXPANSIN 28		10	DQ061067.		Os10g0439200	LOC_Os10g30340.1		0		GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0005576 - extracellular region		
9396	EXPA29	OsEXPA29	ALPHA-EXPANSIN 29		ALPHA-EXPANSIN 29		6	Q4PR39.	 Tolerance and resistance - Stress tolerance	Os06g0718100 	LOC_Os06g50400.1		0		GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0009266 - response to temperature stimulus, GO:0010044 - response to aluminum ion, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane	TO:0000354 - aluminum sensitivity, TO:0000432 - temperature response trait	
9397	OPR11	OsOPR11, OsOPR04-1	12-OXO-PHYTODIENOIC ACID REDUCTASE 11	12-oxo-phytodienoic acid reductase 11	12-OXO-PHYTODIENOIC ACID REDUCTASE 11		4		 Biochemical character				0				
9398	OPR12	OsOPR12, OsOPR04-2	12-OXO-PHYTODIENOIC ACID REDUCTASE 12	12-oxo-phytodienoic acid reductase 12	12-OXO-PHYTODIENOIC ACID REDUCTASE 12		4		 Biochemical character				0				
9399	OPR13	OsOPR13, OsOPR04-3	12-OXO-PHYTODIENOIC ACID REDUCTASE 13	12-oxo-phytodienoic acid reductase 13	12-OXO-PHYTODIENOIC ACID REDUCTASE 13		4		 Biochemical character				0				
9400	CYN	OsCYN	CYANASE	cyanase	CYANASE		10	NP_001064827. Q9FWK4.	 Biochemical character	Os10g0471300	LOC_Os10g33270.1		0		GO:0003677 - DNA binding, GO:0016836 - hydro-lyase activity, GO:0009439 - cyanate metabolic process, GO:0008824 - cyanate hydratase activity		
9401	ERF1	Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1, OsSHN, SHN	ETHYLENE RESPONSE FACTOR 1	ethylene response factor on chromosome 6, rice wax synthesis regulatory gene 2, wax synthesis regulator 2, Wax Synthesis Regulatory 2, ethylene response factor 1, APETALA2/ethylene-responsive element binding protein 57, Rice Drought-responsive gene 1, SHINE	ETHYLENE RESPONSE FACTOR 1		6	rice ortholog of barley Nud. homolog of Arabidopsis SHN2. EF362638 (Indica). GO:1904276: regulation of wax biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0604000	LOC_Os06g40150.1		0		GO:0010143 - cutin biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0010166 - wax metabolic process, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000709 - leaf gloss, TO:0000276 - drought tolerance	
9402	ERF3	Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12	ETHYLENE RESPONSE FACTOR 3	ethylene response factor on chromosome 2, rice wax synthesis regulatory gene 1, wax synthesis regulator 1, Wax Synthesis Regulatory 1, ethylene response factor 3, APETALA2/ethylene-responsive element binding protein 12	ETHYLENE RESPONSE FACTOR 3		2	rice homolog of barley Nud. a homologous gene of the Arabidopsis cuticle synthesis gene WIN1/SHN1. GO:1904276: regulation of wax biosynthetic process.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os02g0202000	LOC_Os02g10760.1		0		GO:0006351 - transcription, DNA-dependent, GO:0010143 - cutin biosynthetic process, GO:0003700 - transcription factor activity, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0043565 - sequence-specific DNA binding, GO:0010166 - wax metabolic process, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0000424 - brown planthopper resistance, TO:0000709 - leaf gloss, TO:0000276 - drought tolerance	
9403	NOA1	OsNOA1	NITRIC OXIDE-ASSOCIATED 1	Nitric Oxide-Associated1, Nitric Oxide Associated protein 1, NO-ASSOCIATED 1 protein	NITRIC OXIDE-ASSOCIATED PROTEIN 1		2	NM_001052149. Q6YPG5. cGTPase (circularly permuted GTPase). TO:0006060: leaf chlorosis.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0104700	LOC_Os02g01440.1		0		GO:0005739 - mitochondrion, GO:0005525 - GTP binding, GO:0004517 - nitric-oxide synthase activity, GO:0009409 - response to cold, GO:0006809 - nitric oxide biosynthetic process, GO:0046685 - response to arsenic, GO:0051607 - defense response to virus	TO:0000031 - silicon sensitivity, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000319 - rubisco content, TO:0000303 - cold tolerance, TO:0000020 - black streak dwarf virus resistance	
9404	PORA	OsPorA, OsPORA	PROTOCHLOROPHYLLIDE OXIDOREDUCTASE A	NADPH: protochlorophyllide oxidoreductase A, Protochlorophyllide oxidoreductase A	PROTOCHLOROPHYLLIDE OXIDOREDUCTASE A		4	Q7XKF3.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os04g0678700	LOC_Os04g58200.3, LOC_Os04g58200.1, LOC_Os04g58200.2		0		GO:0015979 - photosynthesis, GO:0015995 - chlorophyll biosynthetic process, GO:0016630 - protochlorophyllide reductase activity, GO:0048366 - leaf development, GO:0009658 - chloroplast organization, GO:0009416 - response to light stimulus, GO:0000166 - nucleotide binding, GO:0009408 - response to heat	TO:0000496 - carotenoid content, TO:0000298 - chlorophyll ratio, TO:0000259 - heat tolerance, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000075 - light sensitivity, TO:0000655 - leaf development trait	PO:0001050 - leaf development stage , PO:0009066 - anther 
9405	_	OsRALyase, OsFbox090, OsFbox90, Os_F0337, OsFBO11, FBO11	_	Ribosomal RNA apurinic site specific lyase, F-box protein 90, F-box-type E3 ubiquitin ligase O11	_		2	NM_001053416(obsolete). LOC_Os02g29150. Os_F0337 in Hua et al. 2011.	 Biochemical character	Os02g0493100	LOC_Os02g29150.1, LOC_Os02g29150.2		0				
9406	_	OsPuf4	_	RNA-binding protein of the Puf family member 4	_		12	NM_001073324.		Os12g0488900	LOC_Os12g30520.1		0		GO:0003723 - RNA binding		
9408	_	Os11gRGA3	_	R-gene analog 3	_	SasRGA3	11	AB604617, AB604618, AB604619, AB604620. NBS-LRR protein.	 Tolerance and resistance	Os11g0224900	LOC_Os11g11770.1		0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9409	RGA4	Os11gRGA4, OsRGA4, Pias-1	R-GENE ANALOG 4	R-gene analog 4		SasRGA4	11	Pia candidate RGA. Pia is composed of two adjacent genes SasRGA4 and SasRGA5. NBS-LRR protein. F7J0M6. AB604621, AB604622, AB604623, AB604624, AB604625. RGA4 and RGA5 are also required for Pi-CO39 resistance.(Cesari et al.2013). Pias consists of a functionally specialized NLR pair, the helper Pias-1 and the sensor Pias-2, that is allelic to the previously characterized Pia pair of NLRs: the helper RGA4 and the sensor RGA5 (Shimizu et al. 2022).	 Tolerance and resistance - Disease resistance	Os11g0225100	LOC_Os11g11790.1		0		GO:0051707 - response to other organism, GO:0043531 - ADP binding, GO:0012501 - programmed cell death, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0005524 - ATP binding	TO:0000074 - blast disease	
9410	RGA5	Os11gRGA5, OsRGA5, RGA5-A, RGA5-B, Pi5, Pias-2	R-GENE ANALOG 5	R-gene analog 5		SasRGA5, RGA5-HMA3, RGA5-HMA4, RGA5HMA5, RGA5HMA5K/E, RGA5HMA6	11	Pia candidate RGA. Pia is composed of two adjacent genes SasRGA4 and SasRGA5. NBS-LRR protein. AB604626, AB604627 (Sasanishiki RGA5-A), AB604628, AB604629, AB604630. KC777365 (Sasanishiki RGA5-B), KC777364(CO39 RGA5-B). RGA4 and RGA5 are also required for Pi-CO39 resistance.(Cesari et al. 2013) Pi5 in Yu et al. 2018. Pias consists of a functionally specialized NLR pair, the helper Pias-1 and the sensor Pias-2, that is allelic to the previously characterized Pia pair of NLRs: the helper RGA4 and the sensor RGA5 (Shimzu et al. 2022).	 Tolerance and resistance - Disease resistance	Os11g0225300	LOC_Os11g11810.1		0		GO:0016046 - detection of fungus, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0043531 - ADP binding, GO:0002238 - response to molecule of fungal origin	TO:0000074 - blast disease	
9411	_	SasPKA1, PKA1	_		_		11	serine/threonine kinase related protein	 Biochemical character				0				
9412	_	Os11gRGA1	_	R-gene analog 1	_		11	AB604615. NBS-LRR protein.	 Tolerance and resistance				0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9413	_	Os11gRGA2	_	R-gene analog 2	_		11	AB604616. NBS-LRR protein.	 Tolerance and resistance				0		GO:0043531 - ADP binding, GO:0006952 - defense response		
9414	_	Os11gRGA6	_	R-gene analog 6	_		11	NBS-LRR protein.					0				
9415	_	Os11gRGA7	_	R-gene analog 7	_		11	NBS-LRR protein. AB604631, AB604632, AB604633, AB604634, AB604635.	 Tolerance and resistance				0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9416	_	Os11gRGA8	_	R-gene analog 8	_		11	NBS-LRR protein. AB604636, AB604637, AB604638, AB604639.	 Tolerance and resistance				0		GO:0043531 - ADP binding, GO:0006952 - defense response		
9417	_	Os11gRGA9	_	R-gene analog 9	_		11	NBS-LRR protein. AB604640, AB604641, AB604642, AB604643.	 Tolerance and resistance				0		GO:0043531 - ADP binding, GO:0006952 - defense response		
9418	_	Os11gRGA10	_	R-gene analog 10	_		11	NBS-LRR protein. AB604644, AB604645.					0				
9419	_	Os11gRGA11	_	R-gene analog 11	_		11	NBS-LRR protein.					0				
9420	_	Os11gRGA12	_	R-gene analog 12	_		11	NBS-LRR protein.					0				
9421	_	Os11gRGAC	_	R-gene analog C	_		11	NBS-LRR protein. AB604611, AB604612, AB604613, AB604614.	 Tolerance and resistance				0		GO:0006952 - defense response, GO:0043531 - ADP binding		
9422	EXPA30	OsEXPA30	ALPHA-EXPANSIN 30	expansin A30	ALPHA-EXPANSIN 30				 Vegetative organ - Root				0				
9423	RTH1	OsAPY, RTH1, OsAPY3, APY3	ROOT HAIRLESS 1	apyrase, root hairless 1, ATP-diphosphohydrolase, Apyrase 3	ATP-DIPHOSPHOHYDROLASE	rth1	7	Q6Z4P2. OsAPY3 in Chowdhury et al. 2023.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os07g0682800	LOC_Os07g48430.1, LOC_Os07g48430.2, LOC_Os07g48430.3, LOC_Os07g48430.4		0		GO:0042742 - defense response to bacterium, GO:0009134 - nucleoside diphosphate catabolic process, GO:0017110 - nucleoside-diphosphatase activity, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0009413 - response to flooding, GO:0009651 - response to salt stress, GO:0009269 - response to desiccation, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0051607 - defense response to virus, GO:0009409 - response to cold	TO:0000259 - heat tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000148 - viral disease resistance, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance	PO:0009010 - seed , PO:0009030 - carpel , PO:0009049 - inflorescence , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0005052 - plant callus 
9424	_	OsAPYL	_	apyrase-like	_			AF358764.					0				
9425	RHL1	RHL1, OsRHL1	ROOT HAIRLESS 1	root hairless 1	BHLH TRANSCRIPTION FACTOR	rhl1-1, rhl1-2		bHLH transcription factor.					0				
9426	PDR5	ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5	PLEIOTROPIC DRUG RESISTANCE 5	ABC transporter G43, pleiotropic drug resistance 5, ABC transporter superfamily ABCG subgroup member 43	PLEIOTROPIC DRUG RESISTANCE 5		7	cadmium tolerance. Q8GU86. AJ535050.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os07g0522500	LOC_Os07g33780.1		0		GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
9427	IRT2	OsIRT2, OsIRT1, OsZIP15, ZIP15	IRON-REGULATED TRANSPORTER 2	IRON-REGULATED TRANSPORTER2, Zinc- and iron-regulating transport-like protein 15, Zn- and Fe-regulating transport-like protein 15	IRON-REGULATED TRANSPORTER 2		3	AB126086. Q6L8G1. D49213. CI162465. OsIRT1 in Kobayashi et al. 2005, Regon et al. 2022. TO:0006049: iron concentration. TO:0006053: zinc concentration. TO:0020090: zinc content trait. GO:1990641: response to iron ion starvation. TO:0006059: cadmium content trait. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0667300	LOC_Os03g46454.1		0		GO:0006826 - iron ion transport, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0010042 - response to manganese ion, GO:0016021 - integral to membrane, GO:0055072 - iron ion homeostasis, GO:0010269 - response to selenium ion, GO:0070574 - cadmium ion transmembrane transport	TO:0000032 - selenium sensitivity, TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity, TO:0000073 - manganese sensitivity	PO:0009005 - root 
9428	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3, OsHMP34, HMP34	GRAIN CD CONCENTRATION ON CHROMOSOME 7	heavy metal ATPase 3, heavy metal transporter 3, heavy metal P-Type ATPase 3, heavy metal P1B-ATPase 3, grain Cd concentration on chromosome 7, Heavy metal-associated protein 34	HEAVY METAL ATPASE 3	GCC7PA64s, GCC793-11, OsHMA3W0, OsHMA3W4, OsHMA3Nip, OsHMA3-35, OsHMA3AD	7	AB559518, AB559519, AB559520, AB559521, AB559522. P1B-ATPase transporter. a vacuolar cadmium (Cd) transporter. TO:0006059: cadmium concentration. TO:0006059: cadmium content trait. GO:0071585 detoxification of cadmium ion. associated with root median metaxylem diameter. TO:0006052:copper concentration. TO:0006048: manganese concentration. TO:0020096: mineral and ion transport trait.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os07g0232900	LOC_Os07g12900.1		0		GO:0006754 - ATP biosynthetic process, GO:0046873 - metal ion transmembrane transporter activity, GO:0015691 - cadmium ion transport, GO:0070574 - cadmium ion transmembrane transport, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0009751 - response to salicylic acid stimulus, GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0007034 - vacuolar transport, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	TO:0000043 - root anatomy and morphology trait, TO:0000401 - plant growth hormone sensitivity	PO:0009005 - root 
9443	_	OsVHA-A	_	Vacuolar H-ATPase A subunit	_			TP H+-ATPase.	 Biochemical character				0				
9444	_	OSA1	_	plasma membrane H(+)-ATPase 1, PM H+-ATPase 1	_				 Biochemical character				0				
9445	_	OSA2	_	plasma membrane H(+)-ATPase 2, PM H+-ATPase 2	_				 Biochemical character				0				
9446	_	OsLOL1, OsSTA289, OsLSD1	_	LSD1-like 1	_		12	zinc-finger protein. Q2QMB3. ABA99369. LOC_Os12g41700. a mature anther-preferentially expressed gene. one of the five AtLSD1 homologs in rice genome. OsLSD1 in Huang et al. 2015.	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0611000	LOC_Os12g41700.1		0		GO:0005634 - nucleus		PO:0009066 - anther 
9447	_	OsLSD1	_		_			zinc-finger protein.					0				
9448	_	OsiWAK1, WAK1	_	Oryza sativa indica WAK1, Oryza sativa indica Wall-Associated kinase 1	_		11	AF353091. Os11g0691240 (in Rap2 (build4)). GO:0044589: pectin binding.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0691100 	LOC_Os11g46860.1		0		GO:0043067 - regulation of programmed cell death, GO:0004674 - protein serine/threonine kinase activity, GO:0048653 - anther development, GO:0009756 - carbohydrate mediated signaling, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding, GO:0048028 - galacturonan binding	TO:0000437 - male sterility	PO:0001004 - anther development stage 
9449	RDCP1	OsRDCP1, OsRING320, RING320, OsREIW1, REIW1	RING DOMAIN-CONTAINING PROTEIN 1	RING domain-containing protein 1, RING domain containing protein 1, RING-type E3 ubiquitin ligase 320, RING-finger E3 ubiquitin ligases interacting with WRKY 1	RING DOMAIN-CONTAINING PROTEIN 1	osrdcp1, reiw1ko	4	RING domain-containing E3 ubiquitin ligase. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0530500	LOC_Os04g44820.1, LOC_Os04g44820.2		0		GO:0031348 - negative regulation of defense response, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
9450	RDCP2	OsRDCP2, OsRING319, RING319	RING DOMAIN-CONTAINING PROTEIN 2	RING domain-containing protein 2, RING-type E3 ubiquitin ligase 319	RING DOMAIN-CONTAINING PROTEIN 2		2	RING Finger Protein (OsRFP). LOC_Os02g42690.		Os02g0639800 	LOC_Os02g42690.1, LOC_Os02g42690.2, LOC_Os02g42690.3		0		GO:0008270 - zinc ion binding		
9451	RDCP3	OsRDCP3, OsRING166, RING166	RING DOMAIN-CONTAINING PROTEIN 3	RING domain-containing protein 3, RING-type E3 ubiquitin ligase 166	RING DOMAIN-CONTAINING PROTEIN 3		1			Os01g0766200 	LOC_Os01g56070.1, LOC_Os01g56070.2, LOC_Os01g56070.3, LOC_Os01g56070.4		0		GO:0008270 - zinc ion binding		
9452	RDCP4	OsRDCP4, OsRING165, RING165	RING DOMAIN-CONTAINING PROTEIN 4	RING domain-containing protein 4, RING-type E3 ubiquitin ligase 165	RING DOMAIN-CONTAINING PROTEIN 4		3			Os03g0678400 	LOC_Os03g47500.1, LOC_Os03g47500.2		0		GO:0008270 - zinc ion binding		
9453	RDCP5	OsRDCP5, OsRING417, RING417	RING DOMAIN-CONTAINING PROTEIN 5	RING domain-containing protein 5, RING-type E3 ubiquitin ligase 417	RING DOMAIN-CONTAINING PROTEIN 5		12			Os12g0636000 	LOC_Os12g43930.1		0		GO:0008270 - zinc ion binding		
9456	PUB15	OsPUB15	PUB15	Plant U-Box 15	E3 UBIQUITIN LIGASE			E3 ubiquitin ligase.	 Tolerance and resistance - Stress tolerance				0			TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	
9457	SODCC2	Cu/Zn-SOD, Cu/Zn- SOD, OsCu-ZnSOD2, Cu-ZnSOD2, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2, OsCu/ZnSOD2, OsCSD1, CSD1, CuZnSOD1, OsCuZnSOD2, OsCSD4, CSD4, OsCSD3, CSD3, Cu/Zn-SOD3	CYTOSOLIC SUPEROXIDASE DISMUTASE 2	"Cu/Zn-superoxide dismutase, superoxide dismutase B, copper/zinc-superoxide dismutase, \"Cu, Zn superoxide dismutase\", cytosolic copper/zinc-superoxide dismutase 2, \"Superoxide dismutase (Cu-Zn) 4, cytosolic\", Cu-dependent SOD 1.1, cytosolic CuZn SOD 4, Copper/zinc Superoxide Dismutase 3, copper-zinc superoxide dismutase 3"	CYTOSOLIC SUPEROXIDASE DISMUTASE 2		7	D01000. P28757. L19434. D22653. MW091044. Superoxide dismutase (Cu-Zn) 4, cytosolic in Sasaki et al. 1994. ROS-scavenging enzyme. OssodCc1 in Wu et al. 2014. miR398a  target. targeted by miR398 family members (Qin et al. 2017). Cu/ZnSOD2 in Huang et al. 2018. OsCSD1 in Navarro et al. 2021. OsCSD4 in Sanyal  et al. 2022. OsSODB in Xu et al. 2022. OsCSD3 in  in Zheng et al. 2024. the candidate gene for qSL7.2 regarding seed storability. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Longevity,  Reproductive organ - panicle,  Seed - Physiological traits - Dormancy,  Vegetative organ - Culm	Os07g0665200	LOC_Os07g46990.2, LOC_Os07g46990.1		0		GO:0009741 - response to brassinosteroid stimulus, GO:0005737 - cytoplasm, GO:0010193 - response to ozone, GO:0046688 - response to copper ion, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0008270 - zinc ion binding, GO:0019430 - removal of superoxide radicals, GO:0009651 - response to salt stress, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0012501 - programmed cell death, GO:0009845 - seed germination, GO:0046685 - response to arsenic, GO:0009687 - abscisic acid metabolic process, GO:0005634 - nucleus, GO:0016020 - membrane, GO:0006970 - response to osmotic stress, GO:0010039 - response to iron ion, GO:0005507 - copper ion binding, GO:0042742 - defense response to bacterium, GO:0004784 - superoxide dismutase activity	TO:0000605 - hydrogen peroxide content, TO:0002677 - brassinosteroid sensitivity, TO:0000447 - filled grain number, TO:0000435 - seed longevity, TO:0006001 - salt tolerance, TO:0002667 - abscisic acid content, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000040 - panicle length	PO:0007632 - seed maturation stage , PO:0005360 - aleurone layer , PO:0007057 - 0 seed germination stage , PO:0009009 - plant embryo , PO:0009030 - carpel , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009006 - shoot system 
9458	_	OsCatC, CatC, OsCAT, OsCAT1, CAT1	_	catalase C	_			AB020502.	 Tolerance and resistance - Stress tolerance,  Biochemical character				0		GO:0006979 - response to oxidative stress, GO:0010446 - response to alkalinity, GO:0004096 - catalase activity, GO:0009651 - response to salt stress, GO:0020037 - heme binding	TO:0000481 - alkali sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
9459	GSTL1	OsGSTL1, GST1	LAMBDA GLUTATHIONE S-TRANSFERASE 1	lambda class glutathione S-transferase 1, glutathione S-transferase lambda 1	LAMBDA GLUTATHIONE S-TRANSFERASE 1		3	AF237487. Q10N44. DQ319906 (promoter sequence). GST1 in Lian et al. 2021.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0283200 	LOC_Os03g17480.1		0		GO:0009651 - response to salt stress	TO:0000712 - sulfonylurea herbicide sensitivity, TO:0006001 - salt tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity	
9460	GSTL2	OsGSTL2, GSTZ5, OsGSTZ5	LAMBDA GLUTATHIONE S-TRANSFERASE 2	lambda class glutathione S-transferase 2, protein IN2-1 homolog B	LAMBDA GLUTATHIONE S-TRANSFERASE 2		3	DQ323738. A1XBB7. Q8H8U5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0283100 	LOC_Os03g17470.1		0		GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0009635 - response to herbicide, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity, GO:0010731 - protein amino acid glutathionylation	TO:0000031 - silicon sensitivity, TO:0000303 - cold tolerance, TO:0000058 - herbicide sensitivity	
9461	GSTL3	OsGSTL3	LAMBDA GLUTATHIONE S-TRANSFERASE 3	lambda class glutathione S-transferase 3	LAMBDA GLUTATHIONE S-TRANSFERASE 3		3	AY332468.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0283000	LOC_Os03g17460.1		0		GO:0046688 - response to copper ion, GO:0016740 - transferase activity, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0005737 - cytoplasm	TO:0000021 - copper sensitivity	
9462	MAP3	OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMAPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAPK14, MPK3, OsMAPK3, MAPK3	_	MAP kinase 14, MAP kinase 3	_	mapk14	2	AF216317, AF241166, AU055782. Q6Z437. OsMPK3 in Shin et al. 2014, Nanda et al. 2018, Wang et al. 2021, Viana et al. 2021. MAPK14 in Mao et al. 2019.	 Tolerance and resistance - Insect resistance,  Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os02g0148100	LOC_Os02g05480.2, LOC_Os02g05480.1		0		GO:0042542 - response to hydrogen peroxide, GO:0004707 - MAP kinase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding, GO:0000165 - MAPKKK cascade, GO:0009814 - defense response, incompatible interaction, GO:2000033 - regulation of seed dormancy, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000253 - seed dormancy, TO:0000615 - abscisic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	
9463	_	OsMAPK44	_		_				 Biochemical character				0				
9464	_	Oswjumk1	_		_				 Biochemical character				0				
9465	_	OsCERK	_	ceramide kinase	_		2	FJ765452.	 Biochemical character	Os02g0656200	LOC_Os02g43906.1, LOC_Os02g43912.1		0		GO:0004143 - diacylglycerol kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway		
9466	RPP31	OsRPP31, OsGSTF6, GSTF6	PHLOEM PROTEIN 31	31 kDa rice phloem protein, phloem specific glutathione S-transferase, PHI GLUTATHIONE S-TRANSFERASE 6	PHLOEM PROTEIN 31		10	AB103350. LOC_Os10g39740. RPP31 is present in the rice phloem sap as an abundant protein, and is localized only to the phloem region of the leaves.	 Biochemical character	Os10g0543800	LOC_Os10g39740.1		0		GO:0016740 - transferase activity		
9467	GSTU3	OsGSTU3, OsGSTU29, GSTU29	TAU GLUTATHIONE S-TRANSFERASE 3	tau class glutathione S-trasferase 3, tau glutathione S-trasferase 29	TAU GLUTATHIONE S-TRANSFERASE 3		10	AY271620, AF309379, OsGSTU3 and OsGSTU4 are heavy metal and hypoxic stress induced and are differentially salt stress-responsive in rice roots. AC091680: OSJNBa0034L04.7. LOC_Os10g38489.	 Biochemical character	Os10g0528400	LOC_Os10g38489.1		0		GO:0016740 - transferase activity		
9468	GSTU4	OsGSTU4, GST4	TAU GLUTATHIONE S-TRANSFERASE 4	tau class glutathione S-trasferase 4	TAU GLUTATHIONE S-TRANSFERASE 4		10	AY271619, AF309378. AC091680: OSJNBa0034L04.8. GST4 in Lian et al. 2021.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0528300			0		GO:0046685 - response to arsenic, GO:0016740 - transferase activity	TO:0000031 - silicon sensitivity	
9469	_	OsGPCR	_		_		11			Os11g0546100	LOC_Os11g34360.1		0		GO:0004872 - receptor activity, GO:0016021 - integral to membrane		
9470	ZIFL1	OsZIFL1	ZINC-INDUCED FACILITATOR-LIKE 1	zinc-induced facilitator-like 1	ZINC-INDUCED FACILITATOR-LIKE 1		1			Os01g0268100 	LOC_Os01g16260.1, LOC_Os01g16260.2, LOC_Os01g16260.3		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9471	ZIFL2	OsZIFL2, Os-mfs1, mfs1	ZINC-INDUCED FACILITATOR-LIKE 2	zinc-induced facilitator-like 2, major facilitator superfamily antiporter 1	ZINC-INDUCED FACILITATOR-LIKE 2		1	AF543418.		Os01g0279400 	LOC_Os01g17214.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9472	ZIFL3	OsZIFL3	ZINC-INDUCED FACILITATOR-LIKE 3	zinc-induced facilitator-like 3	ZINC-INDUCED FACILITATOR-LIKE 3		7			Os07g0180700	LOC_Os07g08300.1, LOC_Os07g08300.2, LOC_Os07g08300.3, LOC_Os07g08300.4, LOC_Os07g08300.5		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9474	ZIFL5	OsZIFL5, OsTOM2, TOM2	ZINC-INDUCED FACILITATOR-LIKE 5	zinc-induced facilitator-like 5, Transporter of mugineic acids 2	ZINC-INDUCED FACILITATOR-LIKE 5		11	Efflux transporter of phytosiderophore. Major facilitator superfamily antiporter. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0135000	LOC_Os11g04030.4, LOC_Os11g04030.3, LOC_Os11g04030.2, LOC_Os11g04030.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9475	ZIFL6	OsZIFL6	ZINC-INDUCED FACILITATOR-LIKE 6	zinc-induced facilitator-like 6	ZINC-INDUCED FACILITATOR-LIKE 6		11			Os11g0135300	LOC_Os11g04060.1		0		GO:0042254 - ribosome biogenesis, GO:0005840 - ribosome		
9476	ZIFL7	OsZIFL7, OsTOM3, TOM3	ZINC-INDUCED FACILITATOR-LIKE 7	zinc-induced facilitator-like 7, TRANSPORTER OF MUGINEIC ACID 3	ZINC-INDUCED FACILITATOR-LIKE 7		11	TO:0020090: zinc content trait.		Os11g0135900	LOC_Os11g04104.1, LOC_Os11g04104.3, LOC_Os11g04104.2		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9477	ZIFL8	OsZIFL8	ZINC-INDUCED FACILITATOR-LIKE 8	zinc-induced facilitator-like 8	ZINC-INDUCED FACILITATOR-LIKE 8		11			Os11g0136400	LOC_Os11g04150.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9478	ZIFL9	OsZIFL9	ZINC-INDUCED FACILITATOR-LIKE 9	zinc-induced facilitator-like 9	ZINC-INDUCED FACILITATOR-LIKE 9		12			Os12g0132500	LOC_Os12g03830.1		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9479	ZIFL10	OsZIFL10, Os-mfs2, mfs2	ZINC-INDUCED FACILITATOR-LIKE 10	zinc-induced facilitator-like 10, major facilitator superfamily antiporter 2	ZINC-INDUCED FACILITATOR-LIKE 10		12	AF543419. LOC_Os12g03860. Major facilitator superfamily antiporter.	 Biochemical character	Os12g0132800	LOC_Os12g03860.1, LOC_Os12g03860.2, LOC_Os12g03860.3, LOC_Os12g03860.4, LOC_Os12g03860.5, LOC_Os12g03860.6, LOC_Os12g03860.7		0		GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
9480	ZIFL11	OsZIFL11	ZINC-INDUCED FACILITATOR-LIKE 11	zinc-induced facilitator-like 11	ZINC-INDUCED FACILITATOR-LIKE 11		12			Os12g0133000	LOC_Os12g03870.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
9481	ZIFL12	OsZIFL12, OsVMT, VMT, OsVMT/OsZIFL12	ZINC-INDUCED FACILITATOR-LIKE 12	zinc-induced facilitator-like 12, VACUOLAR MUGINEIC ACID TRANSPORTER	ZINC-INDUCED FACILITATOR-LIKE 12		12	LC492899. TO:0020089: iron content trait. TO:0020090: zinc content trait. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os12g0133100	LOC_Os12g03899.4, LOC_Os12g03899.3, LOC_Os12g03899.2, LOC_Os12g03899.1		0		GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0010040 - response to iron(II) ion	TO:0000224 - iron sensitivity	
9482	ZIFL13	OsZIFL13	ZINC-INDUCED FACILITATOR-LIKE 13	zinc-induced facilitator-like 13	ZINC-INDUCED FACILITATOR-LIKE 13		12			Os12g0133300	LOC_Os12g03950.1		0				
9483	IRO2	OsIRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56	IRON-RELATED TRANSCRIPTION FACTOR 2	basic helix-loop-helix protein 056, iron-related transcription factor 2	IRON-RELATED TRANSCRIPTION FACTOR 2	iro2-1, iro2	1	iron-regulated bHLH transcription factor. BR000688. Positive transcriptional regulator. TO:0006049: iron concentration. GO:1990641: response to iron ion starvation.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0952800	LOC_Os01g72370.3, LOC_Os01g72370.2, LOC_Os01g72370.1		0		GO:0005634 - nucleus, GO:0009609 - response to symbiotic bacterium, GO:0009408 - response to heat, GO:0010106 - cellular response to iron ion starvation, GO:0009409 - response to cold, GO:0055072 - iron ion homeostasis, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0005737 - cytoplasm, GO:0042594 - response to starvation, GO:0046688 - response to copper ion, GO:0003677 - DNA binding, GO:0010114 - response to red light, GO:0009751 - response to salicylic acid stimulus, GO:0010040 - response to iron(II) ion, GO:0009651 - response to salt stress	TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000224 - iron sensitivity, TO:0000158 - red light sensitivity, TO:0000021 - copper sensitivity	PO:0009005 - root , PO:0009006 - shoot system 
9484	_	OsDSR-1, DSR-1	_	drought stress response-1	_		10	OsSCS1 paralog. LOC_Os10g09850.	 Tolerance and resistance - Stress tolerance	Os10g0177200	LOC_Os10g09850.1		0		GO:0005509 - calcium ion binding		
9485	BHLH148	OsbHLH148, bHLH148	BASIC HELIX-LOOP-HELIX PROTEIN 148	basic helix-loop-helix protein 148	BASIC HELIX-LOOP-HELIX PROTEIN 148		3	HQ858871. bHLH transcription factor.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0741100	LOC_Os03g53020.1		0		GO:0003677 - DNA binding, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0030528 - transcription regulator activity, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance	
9486	TIFY11D	OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12	TIFY GENE 11D	Jasmonate ZIM-domain protein 1, Jasmonate ZIM-domain protein 12	TIFY DOMAIN PROTEIN 11d		10	Q7XEZ1. XB21 interacting protein (XB21IP). miR5810-target. OsJAZ12 in Ye et al. (2009) and in Yamada et al. (2012), Wang et al. 2019, Kashihara et al. 2019, Zhang et al. 2019, Li et al. 2021, Kong et al. 2021, Gao et al. 2022, Tan et al. 2022, Sun et al. 2022, Mehra et al. 2022, Cui et al. 2023. OsJAZ1 in Seo et al.(2011) and in Lee et al.(2013), Cao et al. 2021, Wang et al. 2021. GO: 1903507: negative regulation of nucleic acid-templates transcription. GO:2000022: regulation of jasmonic acid mediated signaling pathway. a candidate gene for qHNA10 (QTL for N accumulation under high N conditions on chromosome 10). GO:1901698: response to nitrogen compound.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Vegetative organ - Root,  Other,  Character as QTL - Yield and productivity	Os10g0392400	LOC_Os10g25290.1		0		GO:0006355 - regulation of transcription, DNA-dependent, GO:0031347 - regulation of defense response, GO:0003714 - transcription corepressor activity, GO:0051607 - defense response to virus, GO:0009617 - response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0009609 - response to symbiotic bacterium, GO:0016036 - cellular response to phosphate starvation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006351 - transcription, DNA-dependent, GO:0042594 - response to starvation, GO:0009611 - response to wounding	TO:0000227 - root length, TO:0006001 - salt tolerance, TO:0002616 - flowering time, TO:0000102 - phosphorus sensitivity, TO:0000315 - bacterial disease resistance, TO:0002757 - flag leaf length, TO:0000137 - days to heading, TO:0000011 - nitrogen sensitivity, TO:0002736 - flower number, TO:0000148 - viral disease resistance, TO:0000180 - spikelet fertility, TO:0000040 - panicle length, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000590 - grain weight, TO:0000276 - drought tolerance, TO:0000020 - black streak dwarf virus resistance, TO:0000172 - jasmonic acid sensitivity	
9487	_	OsbHLH1	_	basic helix-loop-helix protein 1	_								0				
9488	TIFY11C	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c, OsJAZ1, JAZ1	TIFY GENE 11C	Jasmonate ZIM-domain protein 2, Jasmonate ZIM-domain protein 11	TIFY-DOMAIN PROTEIN 11C	osjaz1	3	Q8GRS2. OsJAZ 11 in Ye et al.(2009), Yamada et al. 2012, Toda et al. 2013, Wang et al. 2019, Kashihara et al. 2019, Gao et al. 2022, Tan et al. 2022, Mehra et al. 2022, Sun et al. 2022, Wang et al. 2021, Ma et al. 2022, Ma et al. 2023, Zhang et al. 2023. OsJAZ2 in Seo et al.(2011) Shimizu et al. 2013 and in Lee et al. (2013). OsJAZ1 in Aung et al. 2018. GO:2000022: regulation of jasmonic acid mediated signaling pathway. PO:0030123: panicle inflorescence. TO:1000022: anther morphology trait. TO:1000024: palea morphology trait.	 Vegetative organ - Root,  Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Seed - Morphological traits,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0180900	LOC_Os03g08320.1		0		GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0009651 - response to salt stress, GO:0002213 - defense response to insect, GO:0016036 - cellular response to phosphate starvation, GO:0080050 - regulation of seed development, GO:0010229 - inflorescence development, GO:0010093 - specification of floral organ identity, GO:0048573 - photoperiodism, flowering, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0055062 - phosphate ion homeostasis, GO:0010966 - regulation of phosphate transport, GO:0048364 - root development, GO:0080022 - primary root development, GO:0042594 - response to starvation, GO:0048281 - inflorescence morphogenesis, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0031347 - regulation of defense response, GO:0005634 - nucleus	TO:0000137 - days to heading, TO:0000576 - stem length, TO:0000447 - filled grain number, TO:0000653 - seed development trait, TO:0002759 - grain number, TO:0006032 - panicle size, TO:0002757 - flag leaf length, TO:0000181 - seed weight, TO:0006013 - carpel number, TO:0000227 - root length, TO:0000172 - jasmonic acid sensitivity, TO:0000214 - anther shape, TO:0000040 - panicle length, TO:0000449 - grain yield per plant, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000180 - spikelet fertility, TO:0000215 - stamen anatomy and morphology trait, TO:0000590 - grain weight, TO:0000315 - bacterial disease resistance, TO:0000207 - plant height, TO:0000657 - spikelet anatomy and morphology trait, TO:0000074 - blast disease, TO:0006010 - lodicule number, TO:0000149 - seed width, TO:0000148 - viral disease resistance, TO:0002736 - flower number, TO:0002616 - flowering time, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000391 - seed size, TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity, TO:0000586 - seminal root length, TO:0006038 - floral organ number, TO:0000225 - stamen number, TO:0006012 - carpel anatomy and morphology trait, TO:0002668 - jasmonic acid content, TO:0006029 - glume number, TO:0000450 - grain yield per panicle	PO:0001170 - seed development stage , PO:0009066 - anther , PO:0009037 - lemma , PO:0009038 - palea , PO:0025349 - awn , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed 
9489	TIFY11A	OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6	TIFY GENE 11A	Jasmonate ZIM-domain protein 3, Jasmonate ZIM-domain protein 9	TIFY-DOMAIN PROTEIN 11A	OsJAZ9-CAS	3	Q8GSI0. OsJAZ9 in Ye et al.(2009), Yamada et al.(2012), Toda et al. 2013, Ogawa et al. 2017, Xu et al. 2018, Kashihara et al. 2019, Li et al. 2021, Gao et al. 2022, Tan et al. 2022, Sun et al. 2022, Lv et al. 2022, Ma et al. 2022, Wu et al. 2023, Song et al. 2023, Zhang et al. 2023, Shi et al. 2021, Wang et al. 2024. OsJAZ 3 in Seo et al. (2011), in Shimizu et al. 2013 and in Lee et al. (2013). OsJAZ6 in Chen et al. 2018. GO:2000022: regulation of jasmonic acid mediated signaling pathway. TO:0000993: cellulose content.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Root,  Reproductive organ - Heading date	Os03g0180800	LOC_Os03g08310.1		0		GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0031347 - regulation of defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0007623 - circadian rhythm, GO:0052541 - plant-type cell wall cellulose metabolic process, GO:0009828 - plant-type cell wall loosening, GO:0051607 - defense response to virus, GO:0048573 - photoperiodism, flowering	TO:0000590 - grain weight, TO:0000418 - bakanae disease resistance, TO:0000397 - grain size, TO:0006001 - salt tolerance, TO:0000148 - viral disease resistance, TO:0000227 - root length, TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0002616 - flowering time, TO:0000172 - jasmonic acid sensitivity, TO:0000396 - grain yield, TO:0000576 - stem length, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000340 - total soluble sugar content, TO:0000269 - 100-seed weight, TO:0000137 - days to heading, TO:0002736 - flower number	PO:0007616 - flowering stage , PO:0009036 - lodicule , PO:0009005 - root , PO:0001077 - lodicule differentiation and expansion stage 
9490	TIFY11B	OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b	TIFY GENE 11B	Jasmonate ZIM-domain protein 4, Jasmonate ZIM-domain protein 10	TIFY-DOMAIN PROTEIN 11B		3	Q10QW3. OsJAZ10 in Ye et al. (2009), Yamada et al. (2012), Uji et al. 2016, Park et al. 2021, Kong et al. 2021, Gao et al. 2022, Sun et al. 2022, Cui et al. 2023. OsJAZ4 in Seo et al.(2011), Shimizu et al. 2013, Lee et al. (2013), Wang et al. 2019, Kashihara et al. 2019. Overexpression of TIFY11b increases grain size (Hakata et al. 2012). GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1901370: response to glutathione.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Seed,  Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os03g0181100	LOC_Os03g08330.1		0		GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0016036 - cellular response to phosphate starvation, GO:0031347 - regulation of defense response, GO:0009617 - response to bacterium, GO:0042594 - response to starvation, GO:0009609 - response to symbiotic bacterium, GO:0048573 - photoperiodism, flowering, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus	TO:0000040 - panicle length, TO:0002759 - grain number, TO:0000303 - cold tolerance, TO:0000227 - root length, TO:0002616 - flowering time, TO:0000172 - jasmonic acid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0002757 - flag leaf length, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000315 - bacterial disease resistance, TO:0000180 - spikelet fertility, TO:0000207 - plant height	
9491	TIFY10A	OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A	TIFY GENE 10A	Jasmonate ZIM-domain protein 5, Jasmonate ZIM-domain protein 6	TIFY-DOMAIN PROTEIN 5	Osjaz6	3	Q84R94. OsJAZ6 in Ye et al. (2009), Kashihara et al. 2019, Gao et al. 2022, Sun et al. 2022, Mehra et al. 2022, He et al. 2023. OsJAZ5 in Seo et al. (2011), Shimizu et al. 2013 and Lee et al. (2013). AK287757 in Yamada et al. (2012). GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Seed - Morphological traits,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf,  Character as QTL - Germination,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os03g0402800	LOC_Os03g28940.2, LOC_Os03g28940.1		0		GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0010030 - positive regulation of seed germination, GO:0051607 - defense response to virus, GO:0031347 - regulation of defense response	TO:0002757 - flag leaf length, TO:0000040 - panicle length, TO:0000590 - grain weight, TO:0000227 - root length, TO:0000172 - jasmonic acid sensitivity, TO:0000315 - bacterial disease resistance, TO:0002759 - grain number, TO:0000137 - days to heading, TO:0000148 - viral disease resistance, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000020 - black streak dwarf virus resistance, TO:0000207 - plant height, TO:0001007 - coleoptile length	PO:0009005 - root , PO:0007057 - 0 seed germination stage 
9492	TIFY10B	OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7	TIFY GENE 10B	Jasmonate ZIM-domain protein 6, Jasmonate ZIM-domain protein 7.	TIFY-DOMAIN PROTEIN 10B	Osjaz7, OsJAZ7-CAS	7	Q8H395. OsJAZ7 in Ye et al. (2009), Yamada et al. (2012), Wang et al. 2019, Kashihara et al. 2019, Sun et al. 2022, Wang et al. 2021, He et al. 2023, Cui et al. 2023, Wang et al. 2024. OsJAZ6 in Seo et al. (2011) and in Lee et al. (2013). BF889459. GO:2000022: regulation of jasmonic acid mediated signaling pathway. TO:0000993: cellulose content.	 Reproductive organ - Heading date,  Character as QTL - Germination,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os07g0615200	LOC_Os07g42370.3, LOC_Os07g42370.2, LOC_Os07g42370.1		0		GO:0007623 - circadian rhythm, GO:0009753 - response to jasmonic acid stimulus, GO:0009828 - plant-type cell wall loosening, GO:0052541 - plant-type cell wall cellulose metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0031347 - regulation of defense response, GO:0042742 - defense response to bacterium, GO:0010030 - positive regulation of seed germination, GO:0009651 - response to salt stress, GO:0009611 - response to wounding	TO:0000180 - spikelet fertility, TO:0006009 - lodicule anatomy and morphology trait, TO:0000269 - 100-seed weight, TO:0000227 - root length, TO:0000207 - plant height, TO:0000315 - bacterial disease resistance, TO:0000040 - panicle length, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000590 - grain weight, TO:0002759 - grain number, TO:0000576 - stem length, TO:0002757 - flag leaf length, TO:0000340 - total soluble sugar content, TO:0001007 - coleoptile length, TO:0002736 - flower number, TO:0000137 - days to heading	PO:0025034 - leaf , PO:0009005 - root , PO:0007057 - 0 seed germination stage , PO:0009036 - lodicule , PO:0007616 - flowering stage , PO:0001077 - lodicule differentiation and expansion stage 
9493	TIFY10C	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8	TIFY GENE 10C	Jasmonate ZIM-domain protein 7, Jasmonate ZIM-domain protein 8.	TIFY-DOMAIN PROTEIN 10C		9	Q69P94. OsJAZ8 in Ye et al. (2009), Toda et al. 2013, Yamada et al. (2012) , Svyatyna et al. (2013), Taniguchi et al. (2013), Uji et al. 2016 & 2017, Wang et al. 2019, Kashihara et al. 2019, He et al. 2020, Yu et al. 2020, Kachewar et al. 2019, Li et al. 2021, Gao et al. 2022, Tan et al. 2022, Lv et al. 2022, Sun et al. 2022, Mehra et al. 2022, Ma et al. 2022, Taniguchi et al. 2023, Li et al. 2023, Wang et al. 2023, He et al. 2023, Liu et al. 2023, Cui et al. 2023. OsJAZ7 in Seo et al. (2011) and Lee et al. (2013), Wang et al. 2021. GO:1900056: negative regulation of leaf senescence. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed - Morphological traits,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance,  Vegetative organ - Root,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Character as QTL - Germination	Os09g0439200	LOC_Os09g26780.1		0		GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0010150 - leaf senescence, GO:0009413 - response to flooding, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0005829 - cytosol, GO:0051607 - defense response to virus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0031347 - regulation of defense response, GO:0002213 - defense response to insect, GO:0005634 - nucleus, GO:0043289 - apocarotenoid biosynthetic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0002736 - flower number, TO:0000590 - grain weight, TO:0000315 - bacterial disease resistance, TO:0000137 - days to heading, TO:0000172 - jasmonic acid sensitivity, TO:0000227 - root length, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0002616 - flowering time, TO:0006001 - salt tolerance, TO:0002757 - flag leaf length, TO:0000524 - submergence tolerance, TO:0000148 - viral disease resistance, TO:0002759 - grain number, TO:0000424 - brown planthopper resistance, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility	PO:0001054 - 4 leaf senescence stage , PO:0007057 - 0 seed germination stage 
9494	TIFY6B	OsJAZ8, JAZ8, OsJAZ 4, OsJAZ4, JAZ4, OsTIFY6b, OsJAZ4-2, JAZ4-2. OsJAZ3, JAZ3	TIFY GENE 6B	Jasmonate ZIM-domain protein 8, Jasmonate ZIM-domain protein 4.	TIFY-DOMAIN PROTEIN 6B	osjaz4, sjaz4 #3, osjaz4 #4	9	Q6ES51. OsJAZ4 in Ye et al. (2009) and in Yamada et al. (2012), Kashihara et al. 2019, Li et al. 2021, Sun et al. 2022, Zhang et al. 2024. OsJAZ4-2 (LOC_Os09g23660.2) in Sun et al. 2022. OsJAZ8 in Seo et al. (2011) and Lee et al. (2013), Um et al. 2018, Li et al. 2019. OsJAZ3 in Zhang et al. 2023. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os09g0401300	LOC_Os09g23660.2, LOC_Os09g23660.1, LOC_Os09g23650.1		0		GO:0009867 - jasmonic acid mediated signaling pathway, GO:0031347 - regulation of defense response, GO:0048573 - photoperiodism, flowering, GO:0042742 - defense response to bacterium, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0002679 - respiratory burst during defense response, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0051607 - defense response to virus, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0002660 - cytokinin content, TO:0000227 - root length, TO:0002672 - auxin content, TO:0000315 - bacterial disease resistance, TO:0000455 - seed set percent, TO:0002675 - gibberellic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000148 - viral disease resistance, TO:0000371 - yield trait, TO:0000605 - hydrogen peroxide content, TO:0002616 - flowering time, TO:0000074 - blast disease, TO:0000382 - 1000-seed weight, TO:0000180 - spikelet fertility, TO:0000447 - filled grain number	PO:0025034 - leaf 
9495	TIFY6A	OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a	TIFY GENE 6A	Jasmonate ZIM-domain protein 9, Jasmonate ZIM-domain protein 3, Jasmonate Zim-Domain3	TIFY-DOMAIN PROTEIN 6A	osjaz9	8	Q6ZJU3. OsJAZ3 in Ye et al. (2009), Yamada et al. 2012, Wang et al. 2019, Kashihara et al. 2019, Sun et al. 2022. OsJAZ9 in Seo et al. (2011) and in Lee et al. (2913), Um et al. 2018. HQ858803. ZIM transcription factor. GO:2000022:  regulation of jasmonic acid mediated signaling pathway.	 Vegetative organ - Root,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os08g0428400	LOC_Os08g33160.2, LOC_Os08g33160.1		0		GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009611 - response to wounding, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0031347 - regulation of defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0002616 - flowering time, TO:0000227 - root length, TO:0000172 - jasmonic acid sensitivity	
9496	EG2	OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2	EXTRA GLUME 2	Jasmonate ZIM-domain protein 1, Jasmonate ZIM-domain protein 10, extra glume 2, TIFY gene 3	TIFY-DOMAIN PROTEIN 3	eg2, eg2-1D, osjaz1-1D, jaz1, osjaz1	4	Q7XPM8. OsJAZ 1 in Ye et al. (2009), Yamada et al. (2012), Tian et al. 2019, Kashihara et al. 2019, He et al. 2023. OsJAZ10 in Seo et al. (2011) and Lee et al. (2013). a JA signalling repressor. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Seed - Morphological traits,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Root,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date,  Character as QTL - Germination	Os04g0653000	LOC_Os04g55920.5, LOC_Os04g55920.1, LOC_Os04g55920.2		0		GO:0031347 - regulation of defense response, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0048449 - floral organ formation, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0009413 - response to flooding, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0010582 - floral meristem determinacy, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0048573 - photoperiodism, flowering	TO:0000303 - cold tolerance, TO:0000040 - panicle length, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000172 - jasmonic acid sensitivity, TO:0000576 - stem length, TO:0000657 - spikelet anatomy and morphology trait, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000227 - root length, TO:0002616 - flowering time, TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
9497	TIFY9	OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ5, JAZ11/TIFY9	TIFY GENE 9	Jasmonate ZIM-domain protein 5, Jasmonate ZIM-domain protein 11.	TIFY-DOMAIN PROTEIN 9		4	Q7XV97. OsJAZ5 in Ye et al. (2009), Kashihara et al. 2019, Li et al. 2021, Gao et al. 2022, Sun et al. 2022, Mehra et al. 2022, Wang et al. 2021, Ma et al. 2023, Zhang et al. 2023, Wang et al. 2023. OsJAZ11 in Seo et al. (2011) and in Lee et al. (2013). AK240828 in Yamada et al. (2012). GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os04g0395800	LOC_Os04g32480.1		0		GO:0051607 - defense response to virus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042594 - response to starvation, GO:0031347 - regulation of defense response, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0048573 - photoperiodism, flowering, GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0009651 - response to salt stress	TO:0002757 - flag leaf length, TO:0000102 - phosphorus sensitivity, TO:0006001 - salt tolerance, TO:0002616 - flowering time, TO:0000227 - root length, TO:0002759 - grain number, TO:0000207 - plant height, TO:0000148 - viral disease resistance, TO:0000040 - panicle length, TO:0000180 - spikelet fertility, TO:0000137 - days to heading, TO:0000172 - jasmonic acid sensitivity, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000590 - grain weight	
9498	TIFY8	OsJAZ12, OsTIFY8, OsSTA75	TIFY GENE 8	Jasmonate ZIM-domain protein 12	TIFY-DOMAIN PROTEIN 8		2	OsJAZ12 in Seo et al. (2011) and in Lee et al. (2013). LOC_Os02g49970. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0732400	LOC_Os02g49970.1		0				PO:0009066 - anther 
9499	ERF101	OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6, ERF113, OsERF113, OsERF101/OsRAP2.6	ETHYLENE RESPONSE FACTOR 101	ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 101, drought-responsive ethylene response factor 6, drought-responsive ERF 6, ethylene response factor 101, APETALA2/ethylene-responsive element binding protein 89	ETHYLENE RESPONSE FACTOR 101	oserf101, oserf101-1, oserf101-2	4	AP2 transcription factor. GO:1900057: positive regulation of leaf senescence. TO:0000919: grain weight. ERF113 in Wang et al. 2020.	 Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility	Os04g0398000	LOC_Os04g32620.1		0		GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009626 - plant-type hypersensitive response, GO:0010229 - inflorescence development, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009646 - response to absence of light, GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0010150 - leaf senescence, GO:0048653 - anther development, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0006952 - defense response, GO:0031349 - positive regulation of defense response	TO:0000316 - photosynthetic ability, TO:0000040 - panicle length, TO:0000456 - spikelet number, TO:0000249 - leaf senescence, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000180 - spikelet fertility, TO:0000152 - panicle number, TO:0000449 - grain yield per plant, TO:0000625 - spikelet density, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000460 - light intensity sensitivity, TO:0000227 - root length, TO:0000396 - grain yield	PO:0020048 - microspore , PO:0001083 - inflorescence development stage , PO:0009046 - flower , PO:0025313 - tapetum , PO:0001004 - anther development stage 
9500	DREB1G	OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1G	Dehydration-responsive element-binding protein 1G, ethylene response factor 25, APETALA2/ethylene-responsive element binding protein 138	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1G		2	Q6EP77. Os02g0677300 may be the best candidate gene in this region (qLOP2 and qPSR2-1 loci) (Xiao et al. 2014). OsDREB1I in Mao et al. 2019.	 Tolerance and resistance - Stress tolerance	Os02g0677300	LOC_Os02g45450.1		0		GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009739 - response to gibberellin stimulus, GO:0003700 - transcription factor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0030912 - response to deep water, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0020141 - stem node , PO:0009005 - root 
9501	USPA	UspA, OsUspA, OsUSP23, USP23	UNIVERSAL STRESS-INDUCED PROTEIN A	universal stress-induced protein A, universal stress protein 23	UNIVERSAL STRESS-INDUCED PROTEIN A		5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0355400	LOC_Os05g28740.1		0		GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0006950 - response to stress, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	PO:0005052 - plant callus , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root 
9502	GDH1	OsGDH1	GLUTAMATE DEHYDROGENASE 1	glutamate dehydrogenase 1, glutamate dehydrogenase (NAD(P)+)	GLUTAMATE DEHYDROGENASE 1		3	AB024962. D15259. Q852M0.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0794500 	LOC_Os03g58040.3, LOC_Os03g58040.2, LOC_Os03g58040.1		0		GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0060359 - response to ammonium ion, GO:0050897 - cobalt ion binding, GO:0046686 - response to cadmium ion, GO:0005524 - ATP binding, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0004353 - glutamate dehydrogenase [NAD(P)+] activity, GO:0005739 - mitochondrion, GO:0006520 - cellular amino acid metabolic process, GO:0005507 - copper ion binding, GO:0008270 - zinc ion binding, GO:0004352 - glutamate dehydrogenase activity, GO:0009646 - response to absence of light	TO:0000074 - blast disease	
9503	GSTF1	OsGSTF1, RGSI	PHI GLUTATHIONE S-TRANSFERASE 1		PHI GLUTATHIONE S-TRANSFERASE 1		1	AJ002380. O65857.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0371200	LOC_Os01g27360.1		0		GO:0046686 - response to cadmium ion, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity, GO:0043295 - glutathione binding, GO:0005737 - cytoplasm, GO:0010269 - response to selenium ion	TO:0000032 - selenium sensitivity	
9504	GSTF2	OsGSTF2, RGSTII	PHI GLUTATHIONE S-TRANSFERASE 2	glutathione S-transferase II	PHI GLUTATHIONE S-TRANSFERASE 2		1	AJ002381, AF062403	 Biochemical character	Os01g0764000	LOC_Os01g55830.1		0				
9505	GSTF3	OsGSTF3, gstf3	PHI GLUTATHIONE S-TRANSFERASE 3		PHI GLUTATHIONE S-TRANSFERASE 3		3	AF309384. KC610952-KC610963 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os03g0135300	LOC_Os03g04260.1		0				
9506	GSTF4	OsGSTF4	PHI GLUTATHIONE S-TRANSFERASE 4		PHI GLUTATHIONE S-TRANSFERASE 4		1	AF309383	 Biochemical character	Os01g0933900	LOC_Os01g70770.1		0				
9507	GSTF5	OsGSTF5, OsGST F5	PHI GLUTATHIONE S-TRANSFERASE 5	Glutathione transferase I, Phi-class glutathione S-transferase F5, phi class GST F5	PHI GLUTATHIONE S-TRANSFERASE 5		1	AF309382. D16078. Glutathione transferase I in Sasaki et al. 1994.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0369700	LOC_Os01g27210.1		0		GO:0004364 - glutathione transferase activity, GO:0005737 - cytoplasm, GO:0046685 - response to arsenic, GO:0002213 - defense response to insect, GO:0006749 - glutathione metabolic process, GO:0043295 - glutathione binding	TO:0000424 - brown planthopper resistance, TO:0000031 - silicon sensitivity	
9509	GSTF7	OsGSTF7	PHI GLUTATHIONE S-TRANSFERASE 7		PHI GLUTATHIONE S-TRANSFERASE 7		1		 Biochemical character	Os01g0370200	LOC_Os01g27260.1		0				
9510	GSTF8	OsGSTF8	PHI GLUTATHIONE S-TRANSFERASE 8		PHI GLUTATHIONE S-TRANSFERASE 8		1		 Biochemical character	Os01g0370900	LOC_Os01g27340.1		0				
9511	GSTF9	OsGSTF9	PHI GLUTATHIONE S-TRANSFERASE 9		PHI GLUTATHIONE S-TRANSFERASE 9		1		 Biochemical character	Os01g0371400	LOC_Os01g27380.1		0				
9512	GSTF10	OsGSTF10	PHI GLUTATHIONE S-TRANSFERASE 10		PHI GLUTATHIONE S-TRANSFERASE 10		1		 Biochemical character	Os01g0371500	LOC_Os01g27390.1		0				
9513	GSTF11	OsGSTF11, OsGST4	PHI GLUTATHIONE S-TRANSFERASE 11		PHI GLUTATHIONE S-TRANSFERASE 11	osgst4	1	It is not clear that GSTF11 reported in Soranzo (2004) is the same as the one in Jain (2010). OsGST4 in Xu et al. 2018. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0353400	LOC_Os01g25100.1		0		GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
9514	GSTF12	OsGSTF12, OsEnS-7	PHI GLUTATHIONE S-TRANSFERASE 12	endosperm-specific gene 7	PHI GLUTATHIONE S-TRANSFERASE 12		1	LOC_Os01g27630.	 Biochemical character	Os01g0374000	LOC_Os01g27630.1		0		GO:0016740 - transferase activity		
9515	GSTF13	OsGSTF13	PHI GLUTATHIONE S-TRANSFERASE 13		PHI GLUTATHIONE S-TRANSFERASE 13		1	GSTF13 was reported as pseudogene in Soranzo (2004).	 Biochemical character	Os01g0372400	LOC_Os01g27480.1		0				
9516	GSTF14	OsGSTF14, GST14	PHI GLUTATHIONE S-TRANSFERASE 14	glutathione S-transferase 14	PHI GLUTATHIONE S-TRANSFERASE 14		3	AY533122	 Biochemical character	Os03g0134900	LOC_Os03g04220.1		0		GO:0006749 - glutathione metabolic process, GO:0005737 - cytoplasm, GO:0004364 - glutathione transferase activity, GO:0043295 - glutathione binding		
9517	GSTF15	OsGSTF15	PHI GLUTATHIONE S-TRANSFERASE 15		PHI GLUTATHIONE S-TRANSFERASE 15		3	AY5333123	 Biochemical character	Os03g0135100	LOC_Os03g04240.1		0				
9518	GSTF16	OsGSTF16	PHI GLUTATHIONE S-TRANSFERASE 16		PHI GLUTATHIONE S-TRANSFERASE 16		3	It is not clear that GSTF16 reported in Soranzo (2004) is the same as the one in Jain (2010).	 Biochemical character	Os03g0135200	LOC_Os03g04250.1		0				
9519	GSTF17	OsGSTF17	PHI GLUTATHIONE S-TRANSFERASE 17		PHI GLUTATHIONE S-TRANSFERASE 17		5		 Biochemical character	Os05g0148900	LOC_Os05g05620.1		0				
9520	GSTT1	OsGSTT1	THETA GLUTATHIONE S-TRANSFERASE 1		THETA GLUTATHIONE S-TRANSFERASE 1		11	AF402793	 Biochemical character	Os11g0588300	LOC_Os11g37730.1, LOC_Os11g37730.2		0				
9521	GSTU1	OsGSTU1	TAU GLUTATHIONE S-TRANSFERASE 1	glutathione transferase U1	TAU GLUTATHIONE S-TRANSFERASE 1		3	Q10CE7. AF050102. D16077. Auxin-induced protein.	 Biochemical character	Os03g0785900	LOC_Os03g57200.1		0		GO:0004364 - glutathione transferase activity, GO:0005737 - cytoplasm, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process		
9522	GSTU2	OsGSTU2, ParC	TAU GLUTATHIONE S-TRANSFERASE 2		TAU GLUTATHIONE S-TRANSFERASE 2		10	AF309380. D16067. AC091680: OSJNBa0034L04.3. LOC_Os10g38630.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0529800	LOC_Os10g38630.1, LOC_Os10g38630.2		0		GO:0016740 - transferase activity, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
9523	GSTU5	OsGSTU5	TAU GLUTATHIONE S-TRANSFERASE 5	tau class glutathione S-transferase 5, glutathione transferase U5	TAU GLUTATHIONE S-TRANSFERASE 5		9	AF309377. glutathione-s-transferase (GST). GO:0098542: defense response to other organism.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os09g0367700	LOC_Os09g20220.1		0		GO:0051707 - response to other organism, GO:0006952 - defense response, GO:0043207 - response to external biotic stimulus, GO:0010038 - response to metal ion, GO:0005737 - cytoplasm, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity, GO:0046685 - response to arsenic, GO:0006979 - response to oxidative stress, GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion	TO:0000168 - abiotic stress trait, TO:0000080 - micronutrient sensitivity, TO:0000031 - silicon sensitivity, TO:0000179 - biotic stress trait, TO:0000516 - relative root length	PO:0009005 - root 
9524	GSTU6	OsGSTU6	TAU GLUTATHIONE S-TRANSFERASE 6		TAU GLUTATHIONE S-TRANSFERASE 6		1	AF309376	 Biochemical character	Os01g0558100	LOC_Os01g37750.1		0				
9525	GSTU7	OsGSTU7	TAU GLUTATHIONE S-TRANSFERASE 7		TAU GLUTATHIONE S-TRANSFERASE 7		1	GSTU7 reported in Soranzo (2004) may be the same as GSTU18.	 Biochemical character	Os01g0949700	LOC_Os01g72120.1		0				
9526	GSTU8	OsGSTU8, OsGST35, GST35	TAU GLUTATHIONE S-TRANSFERASE 8	Glutathione S-transferase 35	TAU GLUTATHIONE S-TRANSFERASE 8		10	AF402795. AC091680: OSJNBa0034L04.4. LOC_Os10g38610. OsGST35 in Wang et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0529700	LOC_Os10g38610.1		0		GO:0009414 - response to water deprivation, GO:0016740 - transferase activity	TO:0000276 - drought tolerance	
9527	GSTU9	OsGSTU9	TAU GLUTATHIONE S-TRANSFERASE 9		TAU GLUTATHIONE S-TRANSFERASE 9		10	AF402796. D15695. Auxin-induced protein. AC091680: OSJNBa0034L04.10. LOC_Os10g38590.	 Biochemical character	Os10g0529400	LOC_Os10g38590.1, LOC_Os10g38590.2		0		GO:0016740 - transferase activity		
9528	GSTU10	OsGSTU10	TAU GLUTATHIONE S-TRANSFERASE 10	glutathione transferase U10	TAU GLUTATHIONE S-TRANSFERASE 10		10	LOC_Os10g38780. AF402797.	 Biochemical character	Os10g0531400	LOC_Os10g38780.1		0		GO:0005737 - cytoplasm, GO:0004364 - glutathione transferase activity, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process		
9529	GSTU11	OsGSTU11	TAU GLUTATHIONE S-TRANSFERASE 11	Bronze-2 protein	TAU GLUTATHIONE S-TRANSFERASE 11		7	AF402798. D22910.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0168300	LOC_Os07g07320.1		0		GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity, GO:0046686 - response to cadmium ion, GO:0010269 - response to selenium ion	TO:0000032 - selenium sensitivity	
9530	GSTU12	OsGSTU12, OsGSTU6.2, GSTU6.2	TAU GLUTATHIONE S-TRANSFERASE 12	Glutathione S-transferase GSTU6.2, glutathione transferase U12	TAU GLUTATHIONE S-TRANSFERASE 12		10	AF402799. AC074232: OSJNBb0005J14.1. AC091680: OSJNBa0034L04.9. LOC_Os10g38360. BF889435.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0527800	LOC_Os10g38360.1		0		GO:0050832 - defense response to fungus, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process, GO:0005737 - cytoplasm, GO:0016740 - transferase activity, GO:0004364 - glutathione transferase activity, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
9531	GSTU13	OsGSTU13	TAU GLUTATHIONE S-TRANSFERASE 13		TAU GLUTATHIONE S-TRANSFERASE 13		10	AF402800. AC091680: OSJNBa0034L04.1.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0530500	LOC_Os10g38710.1		0		GO:0016740 - transferase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
9532	GSTU14	OsGSTU14	TAU GLUTATHIONE S-TRANSFERASE 14		TAU GLUTATHIONE S-TRANSFERASE 14		10	AF402801. AC091680: OSJNBa0034L04.6. LOC_Os10g38540.	 Biochemical character	Os10g0528900	LOC_Os10g38540.1		0		GO:0016740 - transferase activity		
9533	GSTU15	OsGSTU15	TAU GLUTATHIONE S-TRANSFERASE 15	glutathione transferase U15	TAU GLUTATHIONE S-TRANSFERASE 15		10	AF402802. AC074232: OSJNBb0005J14.24. GO:0080148: negative regulation of response to water deprivation. GO:0080167: response to karrikin.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0525400	LOC_Os10g38140.1		0		GO:0060416 - response to growth hormone stimulus, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0009414 - response to water deprivation, GO:0009704 - de-etiolation, GO:0016740 - transferase activity, GO:0046686 - response to cadmium ion, GO:0048527 - lateral root development, GO:0009507 - chloroplast, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0009407 - toxin catabolic process	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
9534	GSTU16	OsGSTU16	TAU GLUTATHIONE S-TRANSFERASE 16		TAU GLUTATHIONE S-TRANSFERASE 16		5	AF402803	 Biochemical character	Os05g0412800	LOC_Os05g34150.1		0				
9535	GSTU18	OsGSTU18, OsGSTU7, GSTU7	TAU GLUTATHIONE S-TRANSFERASE 18	glutathione transferase U7	TAU GLUTATHIONE S-TRANSFERASE 18		10	GSTU7 reported in Soranzo (2004) may be the same as GSTU18. AF402794, AF402805. AC091680: OSJNBa0034L04.5. LOC_Os10g38580. OsGSTU7 in Brazier-Hicks et al. 2017.	 Biochemical character	Os10g0529300	LOC_Os10g38580.1		0		GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm, GO:0004364 - glutathione transferase activity, GO:0016740 - transferase activity, GO:0006749 - glutathione metabolic process		
9536	GSTU19	OsGSTU19, GSTU6, OsGSTU6, OsGSTU6.1, GSTU6.1	TAU GLUTATHIONE S-TRANSFERASE 19	glutathione S-transferase GSTU6, glutathione S-transferase GSTU6.16, glutathione transferase U19	TAU GLUTATHIONE S-TRANSFERASE 19		10	AC074232: OSJNBb0005J14.19. AC091680: OSJNBa0034L04.36. GSTU6 in Zhao et al. 2015, Mahesh et al. 2021. photosynthetic electron transport related gene. OsGSTU6.1 in Wang et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0527400	LOC_Os10g38340.1		0		GO:0046686 - response to cadmium ion, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm, GO:0016740 - transferase activity, GO:0050832 - defense response to fungus, GO:0010038 - response to metal ion, GO:0046689 - response to mercury ion, GO:0009414 - response to water deprivation	TO:0000477 - panicle blast disease resistance, TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance	
9537	GSTU20	OsGSTU20	TAU GLUTATHIONE S-TRANSFERASE 20		TAU GLUTATHIONE S-TRANSFERASE 20		10	LOC_Os10g38350. AC074232: OSJNBb0005J14.20. AC091680: OSJNBa0034L04.37.	 Biochemical character	Os10g0527601	LOC_Os10g38350.1		0				
9538	GSTU21	OsGSTU21	TAU GLUTATHIONE S-TRANSFERASE 21		TAU GLUTATHIONE S-TRANSFERASE 21		10		 Biochemical character	Os10g0525500	LOC_Os10g38150.1		0				
9539	GSTU22	OsGSTU22	TAU GLUTATHIONE S-TRANSFERASE 22		TAU GLUTATHIONE S-TRANSFERASE 22		10	AC074232: OSJNBb0005J14.12. LOC_Os10g38160. Os10g0525600 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38160		0		GO:0016740 - transferase activity		
9540	GSTU23	OsGSTU23	TAU GLUTATHIONE S-TRANSFERASE 23		TAU GLUTATHIONE S-TRANSFERASE 23		10	AC091680: OSJNBa0034L04.2. LOC_Os10g38700.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0530400	LOC_Os10g38700.1		0		GO:0006749 - glutathione metabolic process, GO:0016740 - transferase activity, GO:0004364 - glutathione transferase activity, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm	TO:0000074 - blast disease	
9542	GSTU25	OsGSTU25	TAU GLUTATHIONE S-TRANSFERASE 25		TAU GLUTATHIONE S-TRANSFERASE 25		10	AC091680: OSJNBa0034L04.15. LOC_Os10g38640. Os10g0529900 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38640		0		GO:0016740 - transferase activity		
9543	GSTU26	OsGSTU26	TAU GLUTATHIONE S-TRANSFERASE 26		TAU GLUTATHIONE S-TRANSFERASE 26		10	AC091680: OSJNBa0034L04.12. LOC_Os10g38670.	 Biochemical character	Os10g0530200	LOC_Os10g38670.1		0		GO:0016740 - transferase activity		
9544	GSTU27	OsGSTU27	TAU GLUTATHIONE S-TRANSFERASE 27		TAU GLUTATHIONE S-TRANSFERASE 27		10	AC091680: OSJNBa0034L04.14. LOC_Os10g38660. Os10g0530000 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38660		0		GO:0016740 - transferase activity		
9545	GSTU28	OsGSTU28	TAU GLUTATHIONE S-TRANSFERASE 28		TAU GLUTATHIONE S-TRANSFERASE 28		10	AC091680: OSJNBa0034L04.11. LOC_Os10g38690.	 Biochemical character	Os10g0530300	LOC_Os10g38690.1		0		GO:0016740 - transferase activity		
9547	GSTU30	OsGSTU30	TAU GLUTATHIONE S-TRANSFERASE 30		TAU GLUTATHIONE S-TRANSFERASE 30		10	AC091680: OSJNBa0034L04.17.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0529500	LOC_Os10g38600.1		0		GO:0005737 - cytoplasm, GO:0046685 - response to arsenic, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity		PO:0009006 - shoot system 
9548	GSTU31	OsGSTU31	TAU GLUTATHIONE S-TRANSFERASE 31		TAU GLUTATHIONE S-TRANSFERASE 31		10	AY533124. LOC_Os10g38189.	 Biochemical character	Os10g0525800	LOC_Os10g38189.1		0		GO:0016740 - transferase activity		
9549	GSTU32	OsGSTU32	TAU GLUTATHIONE S-TRANSFERASE 32		TAU GLUTATHIONE S-TRANSFERASE 32		10	LOC_Os10g38314.	 Biochemical character	Os10g0527200	LOC_Os10g38314.1		0		GO:0016740 - transferase activity		
9550	GSTU33	OsGSTU33	TAU GLUTATHIONE S-TRANSFERASE 33		TAU GLUTATHIONE S-TRANSFERASE 33		10		 Biochemical character	Os10g0365200	LOC_Os10g22070.1		0				
9551	GSTU34	OsGSTU34	TAU GLUTATHIONE S-TRANSFERASE 34		TAU GLUTATHIONE S-TRANSFERASE 34		10	TO:0001109: grain color trait.	 Biochemical character,  Seed - Morphological traits,  Coloration - Anthocyanin	Os10g0395400	LOC_Os10g25590.1		0		GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity, GO:0005737 - cytoplasm	TO:0000071 - anthocyanin content	PO:0001170 - seed development stage , PO:0007010 - whole plant fruit ripening stage 
9552	GSTU35	OsGSTU35	TAU GLUTATHIONE S-TRANSFERASE 35	glutathione transferase U35	TAU GLUTATHIONE S-TRANSFERASE 35		1	LOC_Os01g72130. GSTU35 reported in Jain (2010) seems to be different from GSTU35 (AY533125 on chromosome 10) in Soranzo (2004).	 Biochemical character	Os01g0949750	LOC_Os01g72130.1		0		GO:0005737 - cytoplasm, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process, GO:0004364 - glutathione transferase activity		
9553	GSTU36	OsGSTU36	TAU GLUTATHIONE S-TRANSFERASE 36	tau class glutathione S-transferase 36, glutathione transferase U36	TAU GLUTATHIONE S-TRANSFERASE 36		1	GSTU36 reported in Jain(2010) seems to be different from GSTU36(chromosome 3, pseudo) in Soranzo (2004). GO:0098542: defense response to other organism.	 Biochemical character,  Tolerance and resistance	Os01g0949800	LOC_Os01g72140.1		0		GO:0043207 - response to external biotic stimulus, GO:0051707 - response to other organism	TO:0001034 - relative plant height, TO:0000179 - biotic stress trait, TO:0000516 - relative root length	PO:0009005 - root 
9554	GSTU37	OsGSTU37	TAU GLUTATHIONE S-TRANSFERASE 37	tau class glutathione S-transferase 37	TAU GLUTATHIONE S-TRANSFERASE 37		1	GSTU37 reported in Jain (2010) is different from GSTU37 (chromosome 3) in Soranzo (2004).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0949900	LOC_Os01g72150.1		0		GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion, GO:0010045 - response to nickel ion, GO:0032025 - response to cobalt ion, GO:0010038 - response to metal ion, GO:0046685 - response to arsenic, GO:0046688 - response to copper ion	TO:0000016 - cobalt sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000021 - copper sensitivity	PO:0009006 - shoot system 
9555	GSTU38	OsGSTU38	TAU GLUTATHIONE S-TRANSFERASE 38		TAU GLUTATHIONE S-TRANSFERASE 38		6	AY541763	 Biochemical character	Os06g0227500	LOC_Os06g12290.1		0				
9556	GSTU39	OsGSTU39	TAU GLUTATHIONE S-TRANSFERASE 39	glutathione transferase U39	TAU GLUTATHIONE S-TRANSFERASE 39		1	LOC_Os01g49720.	 Biochemical character	Os01g0692100	LOC_Os01g49720.1		0		GO:0009407 - toxin catabolic process, GO:0005737 - cytoplasm, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process		
9557	GSTU40	OsGSTU40	TAU GLUTATHIONE S-TRANSFERASE 40		TAU GLUTATHIONE S-TRANSFERASE 40		1		 Biochemical character	Os01g0692000	LOC_Os01g49710.1		0				
9558	GSTU41	OsGSTU41	TAU GLUTATHIONE S-TRANSFERASE 41		TAU GLUTATHIONE S-TRANSFERASE 41		1		 Biochemical character	Os01g0950000	LOC_Os01g72160.1		0				
9559	GSTU42	OsGSTU42	TAU GLUTATHIONE S-TRANSFERASE 42		TAU GLUTATHIONE S-TRANSFERASE 42		1	a gene in rice zygotes with paternal allele-dependent expression.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0950300	LOC_Os01g72170.1		0		GO:0046688 - response to copper ion, GO:0006952 - defense response	TO:0000112 - disease resistance, TO:0000021 - copper sensitivity	
9560	GSTU43	OsGSTU43	TAU GLUTATHIONE S-TRANSFERASE 43		TAU GLUTATHIONE S-TRANSFERASE 43		3		 Biochemical character	Os03g0595600	LOC_Os03g39850.1		0				
9561	GSTU44	OsGSTU44	TAU GLUTATHIONE S-TRANSFERASE 44	glutathione transferase U44	TAU GLUTATHIONE S-TRANSFERASE 44		3	LOC_Os03g44170.	 Biochemical character	Os03g0643700	LOC_Os03g44170.1		0		GO:0004364 - glutathione transferase activity, GO:0005737 - cytoplasm, GO:0009407 - toxin catabolic process, GO:0006749 - glutathione metabolic process		
9562	GSTU45	OsGSTU45	TAU GLUTATHIONE S-TRANSFERASE 45		TAU GLUTATHIONE S-TRANSFERASE 45		7		 Biochemical character	Os07g0152700	LOC_Os07g05800.1		0				
9563	GSTU46	OsGSTU46	TAU GLUTATHIONE S-TRANSFERASE 46		TAU GLUTATHIONE S-TRANSFERASE 46		7		 Biochemical character	Os07g0468100	LOC_Os07g28480.1		0				
9564	GSTU47	OsGSTU47	TAU GLUTATHIONE S-TRANSFERASE 47	glutathione transferase U47	TAU GLUTATHIONE S-TRANSFERASE 47		10	LOC_Os10g34020.	 Biochemical character	Os10g0481300	LOC_Os10g34020.1		0		GO:0016740 - transferase activity		
9565	GSTU48	OsGSTU48	TAU GLUTATHIONE S-TRANSFERASE 48		TAU GLUTATHIONE S-TRANSFERASE 48		10		 Biochemical character	Os10g0530600	LOC_Os10g38720.1		0				
9566	GSTU49	OsGSTU49	TAU GLUTATHIONE S-TRANSFERASE 49		TAU GLUTATHIONE S-TRANSFERASE 49		10	LOC_Os10g38730. Os10g0530700 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character		LOC_Os10g38730		0				
9567	GSTU50	OsGSTU50	TAU GLUTATHIONE S-TRANSFERASE 50	glutathione transferase U50	TAU GLUTATHIONE S-TRANSFERASE 50		10	chilling tolerance related protein. D10861. Q06398. GO:0080167: response to karrikin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0530900	LOC_Os10g38740.1		0		GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0060416 - response to growth hormone stimulus, GO:0006950 - response to stress, GO:0009704 - de-etiolation, GO:0009507 - chloroplast, GO:0046689 - response to mercury ion, GO:0009407 - toxin catabolic process, GO:0046686 - response to cadmium ion, GO:0048527 - lateral root development, GO:0010038 - response to metal ion, GO:0005737 - cytoplasm, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000034 - chromium sensitivity	
9568	GSTU51	OsGSTU51	TAU GLUTATHIONE S-TRANSFERASE 51	glutathione transferase U51	TAU GLUTATHIONE S-TRANSFERASE 51		11	LOC_Os11g03210.	 Biochemical character		LOC_Os11g03210		0		GO:0016740 - transferase activity		
9569	GSTU52	OsGSTU52	TAU GLUTATHIONE S-TRANSFERASE 52	glutathione transferase U12	TAU GLUTATHIONE S-TRANSFERASE 52		12	LOC_Os12g02960.	 Biochemical character	Os12g0123200	LOC_Os12g02960.1		0		GO:0016740 - transferase activity		
9570	GSTZ3	OsGSTZ3	ZETA GLUTATHIONE S-TRANSFERASE 3		ZETA GLUTATHIONE S-TRANSFERASE 3		2	AY538745	 Biochemical character	Os02g0564000	LOC_Os02g35590.1, LOC_Os02g35590.2, LOC_Os02g35590.3		0				
9571	GSTZ4	OsGSTZ4	ZETA GLUTATHIONE S-TRANSFERASE 4		ZETA GLUTATHIONE S-TRANSFERASE 4		11		 Biochemical character	Os11g0245100	LOC_Os11g14040.1		0				
9572	DHAR1	OsDHAR1, DHAR, cytDHAR, OscytDHAR, OsDHAR	DEHYDROASCORBATE REDUCTASE 1	DHAR class GLUTATHIONE S-TRANSFERASE 1, dehydroascorbate reductase, dehydroascorbate reductase 1, cytosolic dehydroascorbate reductase	DEHYDROASCORBATE REDUCTASE 1		5	AY074786. AB037970. a rice glutathione-dependent DHAR. 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Vegetative organ - Root	Os05g0116100	LOC_Os05g02530.1		0		GO:0048830 - adventitious root development, GO:0010731 - protein amino acid glutathionylation, GO:0043295 - glutathione binding, GO:0005739 - mitochondrion, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0009610 - response to symbiotic fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0046685 - response to arsenic, GO:0005773 - vacuole, GO:0005777 - peroxisome, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:0000302 - response to reactive oxygen species, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0005507 - copper ion binding, GO:0010043 - response to zinc ion, GO:0010193 - response to ozone, GO:0043903 - regulation of symbiosis, encompassing mutualism through parasitism, GO:0009742 - brassinosteroid mediated signaling, GO:0032929 - negative regulation of superoxide release, GO:0006979 - response to oxidative stress	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000396 - grain yield, TO:0000031 - silicon sensitivity, TO:0002677 - brassinosteroid sensitivity	
9573	DHAR2	OsDHAR2	DEHYDROASCORBATE REDUCTASE 2	DHAR classGLUTATHIONE S-TRANSFERASE 2	DEHYDROASCORBATE REDUCTASE 2		6		 Biochemical character	Os06g0232600	LOC_Os06g12630.1, LOC_Os06g12630.2, LOC_Os06g12630.3		0				
9574	TCHQD1	OsTCHQD1	TETRACHLOROHYDROQUINONE DEHYDROGENASE 1	Glutathione S-transferase	TETRACHLOROHYDROQUINONE DEHYDROGENASE 1		4		 Biochemical character	Os04g0435500	LOC_Os04g35560.1, LOC_Os04g35560.2		0				
9576	EF1G2	OsEF1G2	ELONGATION FACTOR 1 GAMMA 2		ELONGATION FACTOR 1 GAMMA 2		6	AY224444,  Q5Z627. 	 Biochemical character	Os06g0571400	LOC_Os06g37440.1		0		GO:0005853 - eukaryotic translation elongation factor 1 complex, GO:0006414 - translational elongation, GO:0003746 - translation elongation factor activity		
9577	GSTT2		THETA GLUTATHIONE S-TRANSFERASE 2  		THETA GLUTATHIONE S-TRANSFERASE 2		11	AY541762	 Biochemical character				0				
9579	CYT-INV1	OsCYT-INV1	ALKALINE/NEUTRAL INVERTASE 1		ALKALINE/NEUTRAL INVERTASE 			Root cell length reduced.	 Vegetative organ - Root				0				
9580	BPH27	Bph27	BROWN PANTHOPPER RESISTANCE 27		_		4	a brown planthopper resistance gene from wild rice (Oryza rufipogon Griff.).	 Tolerance and resistance - Insect resistance				0		GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
9582	HDT701	OsHDT1, HDT701, OsHDT701, ZOS5-12, OsZOS5-12, HDT1	HISTONE DEACETYLASE 701	histone deacetylase OsHDT1, histone deacetylase701, histone deacetylase 701, zinc-finger protein TFIIIA class of Oryza sativa 5-12, ZPT of Oryza sativa 5-12, HISTONE DEACETYLASE 1	HISTONE DEACETYLASE 701	hdt701, hdt701-1	5	Over-expression of OsHDT1 repressed the nonadditive expression of the key flowering repressors in the hybrid (i.e. OsGI and Hd1) inducing early flowering. AU082425, AU068818, D22916, C72062, D15380, AU067990, D39074.  GO:0140426: PAMP-triggered immunity signalling pathway. OsHDT701 in Hou et al. 2021.  HD2 family.	 Biochemical character,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0597100	LOC_Os05g51830.1				GO:0042742 - defense response to bacterium, GO:0005622 - intracellular, GO:0050832 - defense response to fungus, GO:0004407 - histone deacetylase activity, GO:0005730 - nucleolus, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0045087 - innate immune response, GO:0009733 - response to auxin stimulus, GO:0008270 - zinc ion binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0009049 - inflorescence , PO:0009030 - carpel 
9583	HDT2	OsHDT2	HISTONE DEACETYLASE 2	histone deacetylase OsHDT2	HISTONE DEACETYLASE 2		1		 Biochemical character	Os01g0909100	LOC_Os01g68104.1				GO:0004407 - histone deacetylase activity		
9584	LFNR1	OsLFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR, PetH-2	LEAF-TYPE FERREDOXIN-NADP+-OXIDOREDUCTASE 1	leaf-type ferredoxin-NADP+-oxidoreductase 1, leaf-type FNR 1, Fd NADP+ oxidoreductase 1, ferredoxin-NADP reductase	LEAF-TYPE FERREDOXIN-NADP+-OXIDOREDUCTASE 1		2	Q6ZFJ3. Os-LFNR2 in Ynag et al. 2016, Gao et al. 2021.	 Biochemical character,  Vegetative organ - Leaf	Os02g0103800	LOC_Os02g01340.2, LOC_Os02g01340.1				GO:0004324 - ferredoxin-NADP+ reductase activity, GO:0009543 - chloroplast thylakoid lumen, GO:0050660 - FAD binding, GO:0009609 - response to symbiotic bacterium, GO:0042651 - thylakoid membrane, GO:0009767 - photosynthetic electron transport chain, GO:0050661 - NADP or NADPH binding		
9585	_	OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1, PetH-1	_	"leaf-type ferredoxin-NADP+-oxidoreductase 2, leaf-type FNR 2, Fd NADP+ oxidoreductase 2, Leaf
Ferredoxin-NADP+ Reductase, leaf FNR"			6	P41344. D17790. Light reaction group L5. Os-LFNR1 in Ynag et al. 2016.	 Biochemical character,  Vegetative organ - Leaf	Os06g0107700	LOC_Os06g01850.1				GO:0009535 - chloroplast thylakoid membrane, GO:0004324 - ferredoxin-NADP+ reductase activity, GO:0050661 - NADP or NADPH binding, GO:0003959 - NADPH dehydrogenase activity, GO:0008266 - poly(U) RNA binding, GO:0009767 - photosynthetic electron transport chain, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009941 - chloroplast envelope, GO:0048046 - apoplast, GO:0045157 - electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0042742 - defense response to bacterium, GO:0031977 - thylakoid lumen, GO:0050660 - FAD binding, GO:0009570 - chloroplast stroma, GO:0006810 - transport		
9586	PSAD	PsaD, OsPsaD	PHOTOSYSTEM I SUBUNIT 	PSI subunit PsaD, photosystem I subunit PsaD, PSI subunit D	PHOTOSYSTEM I SUBUNIT 		8		 Tolerance and resistance - Stress tolerance	Os08g0560900	LOC_Os08g44680.1				GO:0010287 - plastoglobule, GO:0046686 - response to cadmium ion, GO:0010269 - response to selenium ion, GO:0015979 - photosynthesis, GO:0009535 - chloroplast thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0009538 - photosystem I reaction center	TO:0000032 - selenium sensitivity	
9587	PSAE	PsaE, OsPsaE	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaE, photosystem I subunit PsaE, Photosystem I reaction center subunit IV			7			Os07g0435300	LOC_Os07g25430.1				GO:0009538 - photosystem I reaction center, GO:0015979 - photosynthesis		
9588	PSAF	Usaf, OsPS1-F, PS1-F, OsPS1, PS1	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaF, photosystem I subunit PsaF, PHOTOSYSTEM 1-F subunit		osps1-f	3		 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Coloration - Chlorophyll,  Vegetative organ - Culm	Os03g0778100	LOC_Os03g56670.1, LOC_Os03g56670.2				GO:0015979 - photosynthesis, GO:0009538 - photosystem I reaction center	TO:0000316 - photosynthetic ability, TO:0000326 - leaf color, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000495 - chlorophyll content	PO:0025034 - leaf 
9589	PSAG	PsaG, OsPSAG	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaG, photosystem I subunit PsaG			9			Os09g0481200	LOC_Os09g30340.1				GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009522 - photosystem I, GO:0016168 - chlorophyll binding		
9590	PSAH	PsaH, GOS5, OsPSAH, OsGOS5	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaH, photosystem I subunit PsaH			5	Q0DG05. X51911. A2Y7D9. a light-inducible shoot-specific rice gene.		Os05g0560000	LOC_Os05g48630.1, LOC_Os05g48630.2				GO:0016021 - integral to membrane, GO:0009538 - photosystem I reaction center, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis		
9591	PSAK	PsaK, OsPSAK	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaK, photosystem I subunit PsaK, PSI subunit X			7	XB21 interacting protein (XB21IP).		Os07g0148900	LOC_Os07g05480.2, LOC_Os07g05480.1				GO:0016168 - chlorophyll binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009522 - photosystem I, GO:0015979 - photosynthesis		
9592	PSAL	PsaL, OsPSAL	PHOTOSYSTEM I SUBUNIT	"PSI subunit PsaL, photosystem I subunit PsaL, \"Photosystem I reaction center subunit XI, chloroplastic\""			12			Os12g0420400	LOC_Os12g23200.2, LOC_Os12g23200.1				GO:0009535 - chloroplast thylakoid membrane, GO:0009538 - photosystem I reaction center, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis		
9593	PSAN	PsaN	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaN, photosystem I subunit PsaN			5			Os05g0242400	LOC_Os05g15280.1				GO:0015979 - photosynthesis, GO:0009522 - photosystem I		
9594	PSBO	PsbO, psbO, OsPSBO	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbO, photosystem II subunit PsbO, 33kDa oxygen evolving protein, oxygen-evolving enhancer protein 1			1	D21109.	 Tolerance and resistance - Stress tolerance	Os01g0501800	LOC_Os01g31690.2, LOC_Os01g31690.1				GO:0009654 - oxygen evolving complex, GO:0042549 - photosystem II stabilization, GO:0046686 - response to cadmium ion, GO:0010269 - response to selenium ion, GO:0005509 - calcium ion binding, GO:0019898 - extrinsic to membrane	TO:0000032 - selenium sensitivity	
9595	PSBP	PsbP, OsPsbP, psbP	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbP, photosystem II subunit PsbP, Chloroplast 23 KD polypeptide of photosystem II, Oxygen-evolving enhancer protein 2		psbp	7	EU325990.1 a 23-kDa oxygen-evolving complex protein. KF460579. GO:0090391: granum assembly.	 Tolerance and resistance - Disease resistance	Os07g0141400	LOC_Os07g04840.1				GO:0010027 - thylakoid membrane organization, GO:0009654 - oxygen evolving complex, GO:0009658 - chloroplast organization, GO:0051607 - defense response to virus, GO:0005509 - calcium ion binding, GO:0019898 - extrinsic to membrane, GO:0015979 - photosynthesis	TO:0000148 - viral disease resistance, TO:0002715 - chloroplast development trait	
9596	PSBR	PsbR, OsPsbR1, PsbR1, OsPSBR	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbR, photosystem II subunit PsbR, PSII subunit PsbR1, photosystem II subunit PsbR1			7	a 10 kDa Photosystem II polypeptide. eukaryotic photosystem II oxygen-evolving complex subunit.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0147500	LOC_Os07g05360.1, LOC_Os07g05360.2				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0009654 - oxygen evolving complex, GO:0015979 - photosynthesis	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
9598	PSBX	PsbX	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbX, photosystem II subunit PsbX			3			Os03g0343900	LOC_Os03g22370.1				GO:0015979 - photosynthesis, GO:0009523 - photosystem II		
9599	PSBY	PsbY, OsPSBY	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbY, photosystem II subunit PsbY, PSII core complex PsbY			8		 Tolerance and resistance - Stress tolerance	Os08g0119800	LOC_Os08g02630.1				GO:0051707 - response to other organism, GO:0002237 - response to molecule of bacterial origin, GO:0009535 - chloroplast thylakoid membrane, GO:0030145 - manganese ion binding, GO:0009533 - chloroplast stromal thylakoid, GO:0015979 - photosynthesis, GO:0009523 - photosystem II, GO:0016021 - integral to membrane		
9600	PSBW	PsbW, OsPSBW	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbW, photosystem II subunit PsbW			1	Q5ZBY9.		Os01g0773700	LOC_Os01g56680.1, LOC_Os01g56680.2				GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009523 - photosystem II, GO:0009535 - chloroplast thylakoid membrane		
9601	PSB28	Psb28, OsPSB28	PHOTOSYSTEM II SUBUNIT	PSII subunit Psb28, photosystem II subunit Psb28, hotosystem II reaction center PSB28 protein			1	Q0JG75.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0938100	LOC_Os01g71190.1				GO:0009535 - chloroplast thylakoid membrane, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma, GO:0015979 - photosynthesis, GO:0009654 - oxygen evolving complex	TO:0006001 - salt tolerance	
9602	CP24	Lhcb6, OsCP24, OsLhcb6	LIGHT-HARVESTING PROTEIN CP24	light-harvesting protein CP24, PSII CP24, light-harvesting complex subunit b6	LIGHT-HARVESTING PROTEIN CP24		4		 Tolerance and resistance - Stress tolerance	Os04g0457000	LOC_Os04g38410.1				GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0010114 - response to red light, GO:0010196 - nonphotochemical quenching, GO:0051707 - response to other organism, GO:0009765 - photosynthesis, light harvesting, GO:0010287 - plastoglobule, GO:0009637 - response to blue light	TO:0000159 - blue light sensitivity, TO:0000158 - red light sensitivity	
9603	CP29	OsCP29, LHCB4, Lhcb4, OsLHCB4	LIGHT-HARVESTING PROTEIN CP29	light-harvesting protein CP29, PSII inner antenna subunit CP29, PSII antenna CP29, Photosystem II Inner Antenna CP29, light-harvesting complex subunit b4	LIGHT-HARVESTING PROTEIN CP29		7	light-harvesting Chl a/b-binding protein of photosystem II.	 Tolerance and resistance - Stress tolerance	Os07g0558400	LOC_Os07g37240.1				GO:0046686 - response to cadmium ion, GO:0010269 - response to selenium ion, GO:0009941 - chloroplast envelope, GO:0016168 - chlorophyll binding, GO:0031409 - pigment binding, GO:0009523 - photosystem II, GO:0016021 - integral to membrane, GO:0010287 - plastoglobule, GO:0009644 - response to high light intensity, GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0018298 - protein-chromophore linkage, GO:0009637 - response to blue light, GO:0009535 - chloroplast thylakoid membrane, GO:0009522 - photosystem I, GO:0009765 - photosynthesis, light harvesting, GO:0010218 - response to far red light, GO:0009416 - response to light stimulus, GO:0010114 - response to red light	TO:0000075 - light sensitivity, TO:0000032 - selenium sensitivity	
9604	CP26	ASCAB9-A, OsCP26, Lhcb5, LHCB5, OsLHCB5	LIGHT-HARVESTING PROTEIN CP26	light-harvesting protein ASCAB9-A, PSII CP26, PSII Lhcb5, light-harvesting complex II protein LHCB5	LIGHT-HARVESTING PROTEIN CP26		11	D85512.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0242800	LOC_Os11g13890.1, LOC_Os11g13890.6, LOC_Os11g13890.5, LOC_Os11g13890.4, LOC_Os11g13890.2				GO:0010114 - response to red light, GO:0009416 - response to light stimulus, GO:0009637 - response to blue light, GO:0010287 - plastoglobule, GO:0009533 - chloroplast stromal thylakoid, GO:0046872 - metal ion binding, GO:0009783 - photosystem II antenna complex, GO:0050832 - defense response to fungus, GO:0009517 - PSII associated light-harvesting complex II, GO:0010196 - nonphotochemical quenching, GO:0010218 - response to far red light, GO:0009765 - photosynthesis, light harvesting	TO:0000074 - blast disease, TO:0000075 - light sensitivity, TO:0000605 - hydrogen peroxide content	
9605	LHCA2	lhcA, Lhca2, OsLhca2	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN A2	PSI type II chlorophyll a/b-binding protein, light-harvesting complex I chlorophyll a/b binding protein 2	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN A2		7	Lhca2 in Lian et al. 2021.		Os07g0577600	LOC_Os07g38960.2, LOC_Os07g38960.1				GO:0009523 - photosystem II, GO:0009522 - photosystem I, GO:0016168 - chlorophyll binding, GO:0009765 - photosynthesis, light harvesting, GO:0009535 - chloroplast thylakoid membrane, GO:0009416 - response to light stimulus, GO:0009768 - photosynthesis, light harvesting in photosystem I		
9606	LHCA3	OsLhca3, Lhca3	LIGHT-HARVESTING COMPLEX SUBUNIT A3	PSI type III chlorophyll a/b-binding protein, light-harvesting complex subunit a3	LIGHT-HARVESTING COMPLEX SUBUNIT A3		2		 Tolerance and resistance - Stress tolerance	Os02g0197600	LOC_Os02g10390.3, LOC_Os02g10390.2, LOC_Os02g10390.1				GO:0016168 - chlorophyll binding, GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0009765 - photosynthesis, light harvesting, GO:0009507 - chloroplast, GO:0046686 - response to cadmium ion, GO:0009523 - photosystem II, GO:0009522 - photosystem I, GO:0016021 - integral to membrane, GO:0010287 - plastoglobule, GO:0009535 - chloroplast thylakoid membrane, GO:0009416 - response to light stimulus, GO:0018298 - protein-chromophore linkage, GO:0016020 - membrane		
9607	LHCB1.1	Lhcb1.1 OsLhcb1.1, lhcB	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN B1.1	Type I chlorophyll a/b-binding protein, light-harvesting chlorophyll a/b-binding protein b1.1	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN B1.1		1	homologous to AT1G29920 (CAB2).	 Biochemical character	Os01g0720500	LOC_Os01g52240.1				GO:0009941 - chloroplast envelope, GO:0009765 - photosynthesis, light harvesting, GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0009522 - photosystem I, GO:0009523 - photosystem II, GO:0016021 - integral to membrane, GO:0018298 - protein-chromophore linkage, GO:0009416 - response to light stimulus, GO:0016168 - chlorophyll binding, GO:0031409 - pigment binding, GO:0009535 - chloroplast thylakoid membrane, GO:0010287 - plastoglobule		
9608	LHCB3	Lhcb3, OsLhcb3	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN B3	Type III chlorophyll a/b-binding protein, PSII Cab type III	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN B3		7			Os07g0562700	LOC_Os07g37550.1				GO:0046872 - metal ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009765 - photosynthesis, light harvesting, GO:0005198 - structural molecule activity		
9609	ELL	chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL, OsELL	ETIOLATED LEAF AND LETHAL	Magnesium-chelatase subunit chlI, magnesium chelatase subunit ChlI, MgCh I subbing, Mg-chelatase I subunit, etiolated leaf and lethal	MAGNESIUM CHELATASE L SUBUNIT	ell, oschli	3	Q53RM0.	 Biochemical character,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os03g0563300	LOC_Os03g36540.2, LOC_Os03g36540.1				GO:0016851 - magnesium chelatase activity, GO:0015979 - photosynthesis, GO:0006200 - ATP catabolic process, GO:0009570 - chloroplast stroma, GO:0015995 - chlorophyll biosynthetic process, GO:0009658 - chloroplast organization, GO:0005618 - cell wall, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0009507 - chloroplast	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	
9610	_	chlH	_	Magnesium-chelatase subunit H			7		 Coloration - Chlorophyll,  Biochemical character	Os07g0656500	LOC_Os07g46310.1				GO:0016851 - magnesium chelatase activity, GO:0000166 - nucleotide binding, GO:0015995 - chlorophyll biosynthetic process		
9611	RCA	OsRcaII, rca, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA, RCAalpha, OsRCAalpha, OsRCAbeta	RUBISCO ACTIVASE	"Rubisco activase, the small isoform of rice Rubisco activase, Rubisco activase small isoform, \"ribulose-1, 5-bisphosphate carboxylase/oxygenase activase\", Rubisco activase II, Rubisco activase large isoform, Rubisco activase I, Rubisco-A, RuBisCO activase A1"	RUBISCO ACTIVASE		11	U74321. P93431. BAA97584. BF889465. ABG22614. BF889453. a bacterial blight-resistance gene ME137 (He et al. 2013). XB21 interacting protein (XB21IP). GO:1905157: positive regulation of photosynthesis.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0707000	LOC_Os11g47970.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005524 - ATP binding, GO:0015979 - photosynthesis, GO:0009570 - chloroplast stroma, GO:0050832 - defense response to fungus	TO:0000316 - photosynthetic ability, TO:0000229 - photoperiod sensitivity, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
9612	_	OsNR1, NR1, nia1, OsNIA1, NIA1, OsNIA2, NIA2	_	nitrate reductase apoenzyme 1, nitrate reductase 1, Nitrate reductase [NADH]1		Osnia2, nr1	8	P16081. X15819, X15820. OsNIA2 in Lu et al. 2020. GO:0071731: response to nitric oxide. TO:0020098: nitrate sensitivity. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Character as QTL - Germination	Os08g0468100	LOC_Os08g36480.1				GO:0005506 - iron ion binding, GO:0050660 - FAD binding, GO:0043546 - molybdopterin cofactor binding, GO:0009751 - response to salicylic acid stimulus, GO:0009055 - electron carrier activity, GO:0009703 - nitrate reductase (NADH) activity, GO:0050832 - defense response to fungus, GO:0006809 - nitric oxide biosynthetic process, GO:0010157 - response to chlorate, GO:0009651 - response to salt stress, GO:0020037 - heme binding, GO:0030151 - molybdenum ion binding, GO:0005886 - plasma membrane, GO:0042128 - nitrate assimilation, GO:0009416 - response to light stimulus, GO:0009610 - response to symbiotic fungus, GO:0010167 - response to nitrate, GO:0007263 - nitric oxide mediated signal transduction, GO:0051607 - defense response to virus, GO:0009409 - response to cold, GO:0005773 - vacuole, GO:0009845 - seed germination	TO:0000430 - germination rate, TO:0000303 - cold tolerance, TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000020 - black streak dwarf virus resistance, TO:0000255 - sheath blight disease resistance	PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem , PO:0007057 - 0 seed germination stage 
9613	_	OsNIA2, NIA2, OsNR2, NR2, OsNR3, NR3, OsNR1.2, NR1.2	_	nitrate reductase apoenzyme 2, nitrate reductase 2		nr3	8	OsNR3 in Yi et al. 2022. OsNR1.2  in Zhao et al. 2024. TO:0020098: nitrate sensitivity. GO:0071731: response to nitric oxide.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0468700	LOC_Os08g36500.1				GO:0030151 - molybdenum ion binding, GO:0050660 - FAD binding, GO:0050464 - nitrate reductase (NADPH) activity, GO:0043546 - molybdopterin cofactor binding, GO:0006809 - nitric oxide biosynthetic process, GO:0010157 - response to chlorate, GO:0042128 - nitrate assimilation, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0009414 - response to water deprivation, GO:0010167 - response to nitrate, GO:0007263 - nitric oxide mediated signal transduction, GO:0009733 - response to auxin stimulus	TO:0000188 - drought sensitivity, TO:0000163 - auxin sensitivity, TO:0000011 - nitrogen sensitivity	PO:0009005 - root 
9614	_	Fd1, OsFd1, ADI1, OsADI1	_	Ferredoxin I, ferredoxin, ferredoxin 1, anti-disease protein 1			8	D30763. AY072818. Q0J8M2. GO:1901170: naphthalene catabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0104600	LOC_Os08g01380.2, LOC_Os08g01380.1				GO:0009725 - response to hormone stimulus, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0006810 - transport, GO:0009055 - electron carrier activity, GO:0009628 - response to abiotic stimulus, GO:0046688 - response to copper ion	TO:0000401 - plant growth hormone sensitivity, TO:0000021 - copper sensitivity, TO:0000482 - chemical stress sensitivity	
9615	_		_	Lectin protein kinase domain-containing protein			8		 Biochemical character	Os08g0124000	LOC_Os08g02996.1, LOC_Os08g02996.2				GO:0005524 - ATP binding, GO:0004872 - receptor activity, GO:0004674 - protein serine/threonine kinase activity		
9616	_		_	Chloroplast 50S ribosomal protein			3	Q9ZST0.		Os03g0125000	LOC_Os03g03360.1				GO:0006412 - translation, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome		
9617	_		_	Chloroplast 50S ribosomal protein L1			5			Os05g0388500	LOC_Os05g32220.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0015934 - large ribosomal subunit		
9619	_		_	GDA1/CD39 family protein			11		 Biochemical character	Os11g0125900	LOC_Os11g03230.1, LOC_Os11g03230.2, LOC_Os11g03230.3				GO:0016787 - hydrolase activity		
9620	RFT1	FT-L 3, OsFTL3, FTL3, FT-L3, RFT, OsRFT1	RICE FLOWERING-LOCUS T 1	Rice Flowering-locus T 1, RICE FLOWERING LOCUS T 1, FT-like gene 3, RFT		rft1-1, rft1-2, rft1	6	RFT1 encodes a major LD florigen. Q8VWH2. AB062675, AB062676. AB426870-AB426878 (O. sativa and other wild rice species).	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os06g0157500	LOC_Os06g06300.1		0		GO:0005737 - cytoplasm, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0009737 - response to abscisic acid stimulus, GO:0030154 - cell differentiation, GO:0009909 - regulation of flower development, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0008429 - phosphatidylethanolamine binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus, GO:0005543 - phospholipid binding, GO:0031210 - phosphatidylcholine binding	TO:0000371 - yield trait, TO:0000137 - days to heading, TO:0000615 - abscisic acid sensitivity, TO:0000447 - filled grain number, TO:0000172 - jasmonic acid sensitivity, TO:0000075 - light sensitivity	
9621	PSBS1	OsPsbS1, PsbS1, psbS, OsPSBS	_	rice PsbS homologue 1			1	Q943K1.	 Tolerance and resistance - Stress tolerance	Os01g0869800	LOC_Os01g64960.2, LOC_Os01g64960.1				GO:0009644 - response to high light intensity, GO:0016021 - integral to membrane, GO:0009523 - photosystem II, GO:0010196 - nonphotochemical quenching, GO:0055085 - transmembrane transport, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
9623	PSBS2	PsbS, OsPsbS2	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbS, photosystem II subunit PsbS, rice  PsbS homologue 2, chlorophyll-binding 22 kDa protein of Photosystem II			4	D84392.		Os04g0690800	LOC_Os04g59440.1						
9624	PHF1	OsPHF1, OsWD40-137, OsSEC12	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1, SEC12 ortholog, Phosphate transporter facilitator 1		phf1-1, phf1-2, phf1-3, Osphf1-7, phf1	7	TO:0020102: phosphate content. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance	Os07g0187700	LOC_Os07g09000.1				GO:0046685 - response to arsenic, GO:0006817 - phosphate transport, GO:0005886 - plasma membrane, GO:0016036 - cellular response to phosphate starvation, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0005783 - endoplasmic reticulum	TO:0000102 - phosphorus sensitivity	
9625	PHF1L	OsPHF1L, OsWD40-94	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1-LIKE	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1-LIKE			3			Os03g0799900	LOC_Os03g58570.1						
9626	IPS1	OsIPS1	INDUCED BY PHOSPHATE STARVATION 1	induced by phosphate starvation 1, Phosphate starvation 1			3	AY568759. TPSI1/Mt4 family gene. A phosphorus starvation induced gene OsIPS1. TO:0020102: phosphate content. Pi signaling pathway. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance	Os03g0146800	LOC_Os03g05334.1				GO:0010167 - response to nitrate, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	
9627	SQD2.2	OsSQD2, SQD2, OsSQD2.2	SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.2	sulfoquinovosyldiacylglycerol 2, sulfoquinovosyl transferase-like protein 2.2, Sulfoquinovosyldiacylglycerol synthase 2.2, sulfoquinovosyl diacylglycerol 2	SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.2		1	TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character	Os01g0142300	LOC_Os01g04920.3, LOC_Os01g04920.2, LOC_Os01g04920.1				GO:0009813 - flavonoid biosynthetic process, GO:0009247 - glycolipid biosynthetic process, GO:0046510 - UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0006794 - phosphorus utilization, GO:0046506 - sulfolipid biosynthetic process, GO:0009812 - flavonoid metabolic process, GO:0005737 - cytoplasm, GO:0009941 - chloroplast envelope	TO:0000102 - phosphorus sensitivity, TO:0000290 - flavonoid content, TO:0002661 - seed maturation, TO:0000180 - spikelet fertility, TO:0000346 - tiller number, TO:0000604 - fat and essential oil content	PO:0025034 - leaf 
9629	PHR2	OsPHR2, Os-PHR2	PHOSPHATE STARVATION RESPONSE 2	Phosphate Starvation Response2, PHOSPHATE RESPONSE2, PHOSPHATE STARVATION RESPONSE REGULATOR 2		phr2, Osphr2, osphr2	7	Q6Z156 (japonica). B8B5N8 (indica). PDB: 7E40 (SPX1-PHR2 Complex Structure). PDB accession number 7D3Y (Crystal structure of the osPHR2-osSPX2 complex). PDB accession number 7D3T (Crystal structure of OSPHR2 in complex with DNA). TO:0020102: phosphate content. TO:0006054: arsenic concentration. TO:0020098: nitrate sensitivity. a functional ortholog of AtPHR1. the key transcription factor of phosphate signalling. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root	Os07g0438800	LOC_Os07g25710.3, LOC_Os07g25710.2, LOC_Os07g25710.1, LOC_Os07g25710.4				GO:0006817 - phosphate transport, GO:0044419 - interspecies interaction between organisms, GO:0046717 - acid secretion, GO:0009609 - response to symbiotic bacterium, GO:0048016 - inositol phosphate-mediated signaling, GO:0055062 - phosphate ion homeostasis, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0019740 - nitrogen utilization, GO:0055081 - anion homeostasis, GO:0016036 - cellular response to phosphate starvation, GO:0009741 - response to brassinosteroid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0048767 - root hair elongation, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0010167 - response to nitrate, GO:0006794 - phosphorus utilization, GO:0042742 - defense response to bacterium	TO:0001024 - phosphorus content, TO:0002665 - root hair length, TO:0000102 - phosphorus sensitivity, TO:0000511 - phosphorus uptake, TO:0002677 - brassinosteroid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000168 - abiotic stress trait	PO:0007519 - 5 root hair formation stage 
9630	PHR1	OsPHR1	PHOSPHATE STARVATION RESPONSE 1	PHOSPHATE RESPONSE1		phr1, Osphr1	3	LOC_Os03g21240.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0329900	LOC_Os03g21240.1				GO:0003677 - DNA binding, GO:0048767 - root hair elongation, GO:0042594 - response to starvation, GO:0055081 - anion homeostasis	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
9632	ATG1A	OsATG1a	AUTOPHAGY ASSOCIATED GENE 1A	autophagy 1a			3		 Biochemical character	Os03g0268200	LOC_Os03g16130.1, LOC_Os03g16130.2, LOC_Os03g16130.3, LOC_Os03g16130.4, LOC_Os03g16130.5, LOC_Os03g16130.6				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9635	ATG3A	OsATG3a, Atg3a	AUTOPHAGY ASSOCIATED GENE 3A	autophagy 3a, AUTOPHAGY RELATED3a			1	LOC_Os01g10290.	 Biochemical character	Os01g0200000	LOC_Os01g10290.1, LOC_Os01g10290.2				GO:0006914 - autophagy, GO:0015031 - protein transport, GO:0005737 - cytoplasm		
9636	ATG3B	OsATG3b, Atg3b	AUTOPHAGY ASSOCIATED GENE 3B	autophagy 3b, AUTOPHAGY RELATED3b			10	LOC_Os10g41110.	 Biochemical character	Os10g0560450	LOC_Os10g41110.1						
9637	ATG4A	OsATG4a, Atg4a	AUTOPHAGY ASSOCIATED GENE 4A	autophagy 4a, AUTOPHAGY RELATED4a			3	Q75KP8. LOC_Os03g27350.	 Biochemical character	Os03g0391000	LOC_Os03g27350.1, LOC_Os03g27350.2, LOC_Os03g27350.3				GO:0005737 - cytoplasm, GO:0008234 - cysteine-type peptidase activity, GO:0015031 - protein transport, GO:0006914 - autophagy, GO:0006508 - proteolysis		
9639	ATG5	OsATG5, Atg5	AUTOPHAGY ASSOCIATED GENE 5	autophagy 5, AUTOPHAGY RELATED5			2	Q6ZGL4.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0117800	LOC_Os02g02570.1				GO:0009615 - response to virus, GO:0006914 - autophagy, GO:0005737 - cytoplasm, GO:0015031 - protein transport, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance	
9640	ATG6A	OsATG6a	AUTOPHAGY ASSOCIATED GENE 6A	autophagy 6a			1		 Tolerance and resistance - Stress tolerance	Os01g0681400	LOC_Os01g48920.1				GO:0006914 - autophagy		
9641	ATG6B	OsATG6b, OsATG6c	AUTOPHAGY ASSOCIATED GENE 6B	autophagy 6b			3	OsATG6c in Rana et al. 2012.	 Tolerance and resistance - Stress tolerance	Os03g0644000	LOC_Os03g44200.1, LOC_Os03g44200.2				GO:0006914 - autophagy		
9642	ATG6C	OsATG6c, OsATG6b	AUTOPHAGY ASSOCIATED GENE 6C	autophagy 6c			3	OsATG6b in Rana et al. 2012.	 Tolerance and resistance - Stress tolerance	Os03g0258500	LOC_Os03g15290.1				GO:0006914 - autophagy		
9643	ATG7	OsATG7, Atg7	AUTOPHAGY ASSOCIATED GENE 7	autophagy 7, OsAuTophaGy7, autophagy-related 7, AUTOPHAGY RELATED7		Osatg7, Osatg7-1, Osatg7-2	1	TO:0020093: nitrogen content. GO:2000881: regulation of starch catabolic process.	 Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Morphological traits - Grain shape	Os01g0614900	LOC_Os01g42850.2, LOC_Os01g42850.1				GO:0006914 - autophagy, GO:0046470 - phosphatidylcholine metabolic process, GO:0010150 - leaf senescence, GO:0000166 - nucleotide binding, GO:0010581 - regulation of starch biosynthetic process, GO:0005737 - cytoplasm, GO:0006629 - lipid metabolic process, GO:0048316 - seed development, GO:0009960 - endosperm development, GO:0005983 - starch catabolic process, GO:0009901 - anther dehiscence, GO:0006109 - regulation of carbohydrate metabolic process, GO:0003824 - catalytic activity, GO:0010431 - seed maturation, GO:0010152 - pollen maturation, GO:0009846 - pollen germination, GO:0048653 - anther development	TO:0000106 - male sterility type, TO:0000249 - leaf senescence, TO:0000397 - grain size, TO:0002637 - leaf size, TO:0002655 - starch grain size, TO:0000266 - chalky endosperm, TO:0000696 - starch content, TO:0002661 - seed maturation, TO:0000653 - seed development trait, TO:0002675 - gibberellic acid content, TO:0002660 - cytokinin content	PO:0007632 - seed maturation stage , PO:0001054 - 4 leaf senescence stage , PO:0007633 - endosperm development stage , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0001035 - G anther dehiscence stage , PO:0001170 - seed development stage 
9645	ATG8B	OsATG8b, Atg8b	AUTOPHAGY ASSOCIATED GENE 8B	autophagy 8b, OsAuTophaGy8b, AUTOPHAGY RELATED8b		osatg8b, osatg8b-1, osatg8b-2	4	Q7XPR1. GO:1901698: response to nitrogen compound. GO:0071705: nitrogen compound transport. TO:0020093: nitrogen content.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Seed - Physiological traits,  Character as QTL - Yield and productivity,  Character as QTL - Grain quality,  Coloration - Chlorophyll,  Biochemical character	Os04g0624000	LOC_Os04g53240.1, LOC_Os04g53240.4, LOC_Os04g53240.3, LOC_Os04g53240.2				GO:0033110 - CVT vesicle membrane, GO:0048316 - seed development, GO:0002213 - defense response to insect, GO:0010508 - positive regulation of autophagy, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0019740 - nitrogen utilization, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0000045 - autophagic vacuole formation, GO:0016020 - membrane, GO:0006995 - cellular response to nitrogen starvation, GO:0005776 - autophagic vacuole, GO:0005829 - cytosol, GO:0005773 - vacuole, GO:0050832 - defense response to fungus, GO:0006914 - autophagy, GO:0048364 - root development, GO:0000421 - autophagic vacuole membrane, GO:0005874 - microtubule, GO:0042594 - response to starvation, GO:0015031 - protein transport	TO:0000325 - soluble protein content, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000557 - secondary branch number, TO:0000592 - 1000-dehulled grain weight, TO:0000440 - grain number per plant, TO:0001027 - net photosynthetic rate, TO:0000495 - chlorophyll content, TO:0000457 - total biomass yield, TO:0000357 - growth and development trait, TO:0000506 - nitrogen recycling, TO:0000352 - plant dry weight, TO:0000656 - root development trait, TO:0000011 - nitrogen sensitivity, TO:0000266 - chalky endosperm, TO:0000706 - hull color, TO:0000449 - grain yield per plant, TO:0002759 - grain number, TO:0000396 - grain yield, TO:0000162 - seed quality	PO:0025034 - leaf , PO:0007632 - seed maturation stage , PO:0009005 - root , PO:0001170 - seed development stage 
9646	ATG8C	OsATG8c	AUTOPHAGY ASSOCIATED GENE 8C	autophagy 8c, OsAuTophaGy8c			8	Q6Z1D5. D49033, AU101829.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os08g0191600	LOC_Os08g09240.1, LOC_Os08g09240.2, LOC_Os08g09240.3	GR:0101171			GO:0002213 - defense response to insect, GO:0005874 - microtubule, GO:0000421 - autophagic vacuole membrane, GO:0033110 - CVT vesicle membrane, GO:0015031 - protein transport, GO:0006914 - autophagy	TO:0000424 - brown planthopper resistance, TO:0000432 - temperature response trait	
9647	ATG8D	OsATG8d, Atg8e	AUTOPHAGY ASSOCIATED GENE 8D	autophagy 8d, AUTOPHAGY RELATED8e			2	Q6H6P0. LOC_Os02g32700. Atg8e in Chung et al. 2009. 	 Biochemical character	Os02g0529150	LOC_Os02g32700.1				GO:0000421 - autophagic vacuole membrane, GO:0005874 - microtubule, GO:0006914 - autophagy, GO:0033110 - CVT vesicle membrane, GO:0015031 - protein transport		
9648	ATG8	Atg8, OsAtg8, APG8, OsATG8a, Atg8a	AUTOPHAGY ASSOCIATED GENE 8	autophagy 8, autophagy 8a, AUTOPHAGY ASSOCIATED GENE 8A, OsAuTophaGy8a, AUTOPHAGY RELATED8a			7	Q69RC4, Q2XPP5, DQ269983, ABB77258. Atg8a in Chung et al. 2009, Shi et al . 2024.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os07g0512200	LOC_Os07g32800.1, LOC_Os07g32800.2	GR:0101171	0		GO:0005775 - vacuolar lumen, GO:0019779 - APG8 activating enzyme activity, GO:0005874 - microtubule, GO:0019776 - Atg8 ligase activity, GO:0033110 - CVT vesicle membrane, GO:0005739 - mitochondrion, GO:0005737 - cytoplasm, GO:0002213 - defense response to insect, GO:0005515 - protein binding, GO:0019786 - APG8-specific protease activity, GO:0005776 - autophagic vacuole, GO:0015031 - protein transport, GO:0000421 - autophagic vacuole membrane, GO:0006914 - autophagy	TO:0000424 - brown planthopper resistance	PO:0009025 - vascular leaf , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
9649	ATG8E	OsATG8e, OsATG8d, Atg8d	AUTOPHAGY ASSOCIATED GENE 8E	autophagy 8e, OsAuTophaGy8d, AUTOPHAGY RELATED8d			11	Q2RBS4. LOC_Os11g01010. OsATG8d in Izumi et al. 2015.  Atg8d in Chung et al. 2009. CI298209, CF992091, CI034410, EE591899.	 Biochemical character	Os11g0100100	LOC_Os11g01010.1				GO:0000421 - autophagic vacuole membrane, GO:0006914 - autophagy, GO:0033110 - CVT vesicle membrane, GO:0015031 - protein transport, GO:0005874 - microtubule		
9650	ATG8F	OsATG8f	AUTOPHAGY ASSOCIATED GENE 8F	autophagy 8f			12	Os12g0100050 (in Rap2 (build4), Rap3 (build5)).									
9651	ATG8I	OsATG8i	AUTOPHAGY ASSOCIATED GENE 8I	autophagy 8i				AK065550.									
9652	ATG9A	OsATG9a	AUTOPHAGY ASSOCIATED GENE 9A	autophagy 9a			3			Os03g0248000	LOC_Os03g14380.1						
9653	ATG9B	OsATG9b	AUTOPHAGY ASSOCIATED GENE 9B	autophagy 9b			10			Os10g0163100	LOC_Os10g07994.1						
9654	ATG10A	OsATG10a, Atg10a	AUTOPHAGY ASSOCIATED GENE 10A	autophagy 10a, AUTOPHAGY RELATED10a			4	LOC_Os04g41990.		Os04g0497350	LOC_Os04g41990.1						
9655	ATG10B	OsATG10b, Atg10b	AUTOPHAGY ASSOCIATED GENE 10B	autophagy 10b, AUTOPHAGY RELATED10b			12	LOC_Os12g32210.		Os12g0506800	LOC_Os12g32210.1, LOC_Os12g32210.2						
9656	ATG12	OsATG12, Atg12	AUTOPHAGY ASSOCIATED GENE 12	autophagy 12, AUTOPHAGY RELATED12			6	Q69NP0. LOC_Os06g10340.		Os06g0205000	LOC_Os06g10340.1				GO:0005737 - cytoplasm, GO:0000045 - autophagic vacuole formation, GO:0015031 - protein transport		
9657	ATG13A	OsATG13a	AUTOPHAGY ASSOCIATED GENE 13A	autophagy 13a			2			Os02g0644500	LOC_Os02g43040.1						
9658	ATG13B	OsATG13b	AUTOPHAGY ASSOCIATED GENE 13B	autophagy 13b			4			Os04g0538700	LOC_Os04g45570.1, LOC_Os04g45570.2						
9659	ATG16	OsATG16	AUTOPHAGY ASSOCIATED GENE 16	autophagy 16			9			Os09g0497700	LOC_Os09g32250.1, LOC_Os09g32250.2						
9660	ATG18A	OsATG18a, OsWD40-56	AUTOPHAGY ASSOCIATED GENE 18A	autophagy 18a			2	AY445625. LOC_Os02g54910.		Os02g0791800	LOC_Os02g54910.1				GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding, GO:0016236 - macroautophagy, GO:0070772 - PAS complex, GO:0005829 - cytosol, GO:0000045 - autophagic vacuole formation, GO:0000421 - autophagic vacuole membrane, GO:0034045 - pre-autophagosomal structure membrane		
9661	ATG18B	OsATG18b, OsWD40-3	AUTOPHAGY ASSOCIATED GENE 18B	autophagy 18b			1			Os01g0168500	LOC_Os01g07400.1, LOC_Os01g07400.2				GO:0006914 - autophagy, GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding, GO:0042594 - response to starvation, GO:0031090 - organelle membrane		
9662	ATG18C	OsATG18c, OsWD40-30	AUTOPHAGY ASSOCIATED GENE 18C	autophagy 18c			1	CT832140. 		Os01g0934000	LOC_Os01g70780.1				GO:0010150 - leaf senescence, GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding, GO:0031090 - organelle membrane, GO:0032266 - phosphatidylinositol 3-phosphate binding, GO:0000045 - autophagic vacuole formation, GO:0006914 - autophagy, GO:0005737 - cytoplasm, GO:0042594 - response to starvation		
9663	ATG18D	OsATG18d, OsWD40-114	AUTOPHAGY ASSOCIATED GENE 18D	autophagy 18d			5			Os05g0169200	LOC_Os05g07710.1, LOC_Os05g07710.2, LOC_Os05g07710.3				GO:0032266 - phosphatidylinositol 3-phosphate binding, GO:0006914 - autophagy, GO:0031090 - organelle membrane, GO:0042594 - response to starvation, GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding, GO:0000045 - autophagic vacuole formation, GO:0005737 - cytoplasm		
9664	ATG18E	OsATG18e, OsWD40-27	AUTOPHAGY ASSOCIATED GENE 18E	autophagy 18e			1			Os01g0786900	LOC_Os01g57720.1, LOC_Os01g57720.2, LOC_Os01g57720.3						
9665	ATG18F	OsATG18f, OsWD40-118	AUTOPHAGY ASSOCIATED GENE 18F	autophagy 18f			5			Os05g0405900	LOC_Os05g33610.1, LOC_Os05g33610.2, LOC_Os05g33610.3				GO:0042594 - response to starvation		
9669	V2	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK, OsV2, OsGMK	VIRESCENT 2	virescent2, virescent 2, virescent-2, Gluanylate kinase, plastid/mitochondrial guanylate kinase	GUANYLATE KINASE		3	GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. AB267728.This gene is essential for chloroplast differentiation (Sugimoto et al. 2007).	 Character as QTL - Grain quality,  Seed - Physiological traits - Longevity,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll	Os03g0320900	LOC_Os03g20460.2, LOC_Os03g20460.1	GR:0060981		77.0	GO:0009270 - response to humidity, GO:0009408 - response to heat, GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000345 - seed viability, TO:0000435 - seed longevity, TO:0000250 - vigor related trait, TO:0010001 - percent germination, TO:0000495 - chlorophyll content, TO:0000259 - heat tolerance, TO:0000299 - leaf lamina color, TO:0000432 - temperature response trait, TO:0000441 - humidity related trait	PO:0009025 - vascular leaf 
9670	V1	v1, NUS1, OsV1, OsNUS1	VIRESCENT 1	virescent1, virescent 1, virescent-1, nuclear undecaprenyl pyrophosphate synthase 1	NUS1 PROTEIN		3	PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage.AB550822. Plastid RNA-binding protein. NUS1 is expressed during a strictly limited period at the early P4 stage in a temperature-dependent manner	 Coloration - Chlorophyll	Os03g0656900	LOC_Os03g45400.1	GR:0060980		127.0	GO:0015995 - chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000495 - chlorophyll content, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000299 - leaf lamina color	PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
9671	GK1	cGK, OsGK1	GUANYLATE KINASE 1		GUANYLATE KINASE 1		12	AB267729. GK1 localized in the cytoplasm. Rice plants with educed expression of GK1 are not phenotypically different to normal plants.	 Biochemical character	Os12g0515600	LOC_Os12g33100.1						
9672	PRMT1	OsPRMT1	PROTEIN ARGININE METHYLTRANSFERASE 1	protein arginine methyltransferase 1	PROTEIN ARGININE METHYLTRANSFERASE 1		9	Q0J2C6.	 Biochemical character	Os09g0359800	LOC_Os09g19560.1				GO:0005634 - nucleus, GO:0008168 - methyltransferase activity		
9673	PRMT3	OsPRMT3	PROTEIN ARGININE METHYLTRANSFERASE 3	protein arginine methyltransferase 3	PROTEIN ARGININE METHYLTRANSFERASE 3		7	A3BMN9.	 Biochemical character	Os07g0640000	LOC_Os07g44640.1				GO:0008270 - zinc ion binding, GO:0008168 - methyltransferase activity, GO:0005737 - cytoplasm		
9674	PRMT4	OsPRMT4	PROTEIN ARGININE METHYLTRANSFERASE 4	protein arginine methyltransferase 4	PROTEIN ARGININE METHYLTRANSFERASE 4		7	Q7XI75.	 Biochemical character	Os07g0671700	LOC_Os07g47500.1, LOC_Os07g47500.2, LOC_Os07g47500.3, LOC_Os07g47500.4				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0008469 - histone-arginine N-methyltransferase activity		
9675	PRMT5	OsPRMT5	PROTEIN ARGININE METHYLTRANSFERASE 5	protein arginine methyltransferase 5	PROTEIN ARGININE METHYLTRANSFERASE 5		2	Q6YXZ7.	 Biochemical character	Os02g0139200	LOC_Os02g04660.1, LOC_Os02g04660.2				GO:0005737 - cytoplasm, GO:0008469 - histone-arginine N-methyltransferase activity		
9676	PRMT6A	OsPRMT6a	PROTEIN ARGININE METHYLTRANSFERASE 6A	protein arginine methyltransferase 6a	PROTEIN ARGININE METHYLTRANSFERASE 6A		10	Q75G68.	 Biochemical character	Os10g0489100	LOC_Os10g34740.1				GO:0008168 - methyltransferase activity		
9677	PRMT6B	OsPRMT6b	PROTEIN ARGININE METHYLTRANSFERASE 6B	protein arginine methyltransferase 6b	PROTEIN ARGININE METHYLTRANSFERASE 6B		4	Q7XKC0.	 Biochemical character	Os04g0677066	LOC_Os04g58060.1, LOC_Os04g58060.2				GO:0008168 - methyltransferase activity		
9678	PRMT7	OsPRMT7	PROTEIN ARGININE METHYLTRANSFERASE 7	protein arginine methyltransferase 7	PROTEIN ARGININE METHYLTRANSFERASE 7		6	Q5VS72.	 Biochemical character	Os06g0105500	LOC_Os06g01640.1				GO:0008168 - methyltransferase activity, GO:0006479 - protein amino acid methylation, GO:0005737 - cytoplasm		
9679	PRMT10	OsPRMT710	PROTEIN ARGININE METHYLTRANSFERASE 10	protein arginine methyltransferase 10	PROTEIN ARGININE METHYLTRANSFERASE 10		6	Q9SNQ2.	 Biochemical character	Os06g0142800	LOC_Os06g05090.1, LOC_Os06g05090.2				GO:0005737 - cytoplasm		
9680	4CL1	Os4CL1, 4-CL, 4-CL. 1	4-COUMARATE:COENZYME A LIGASE 1	4-coumarate:coenzyme A ligase 1, 4-coumarate-CoA ligase	4-COUMARATE:COENZYME A LIGASE 1		8	X52623. P17814. EC 6.2.1.12	 Biochemical character	Os08g0245200	LOC_Os08g14760.1				GO:0005524 - ATP binding, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0009698 - phenylpropanoid metabolic process		
9681	4CL2	Os4CL2	4-COUMARATE:COENZYME A LIGASE 2	4-coumarate:coenzyme A ligase 2, 4-coumarate-CoA ligase 2	4-COUMARATE:COENZYME A LIGASE 2		2	Q42982. EC 6.2.1.12 Os4CL2 was probably involved in UV protective flavonol formation.	 Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Biochemical character	Os02g0697400	LOC_Os02g46970.1				GO:0005524 - ATP binding, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0009698 - phenylpropanoid metabolic process, GO:0009813 - flavonoid biosynthetic process		
9682	4CL3	Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL	4-COUMARATE:COENZYME A LIGASE 3	4-coumarate:coenzyme A ligase 3, 4-hydroxycinnamate CoA ligase 2	4-COUMARATE:COENZYME A LIGASE 3		2	Q6ETN3. EC 6.2.1.12. Os4CL3 participates in defense against wounding. 4CL (4-coumarate-CoA Ligase 1) in Rebecca et al. 2010. 4CL2 in Koshiba et al. 2013. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os02g0177600	LOC_Os02g08100.1				GO:0009807 - lignan biosynthetic process, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0009411 - response to UV, GO:0050832 - defense response to fungus, GO:0052386 - cell wall thickening, GO:0009809 - lignin biosynthetic process, GO:0009834 - secondary cell wall biogenesis, GO:0005524 - ATP binding, GO:0009698 - phenylpropanoid metabolic process	TO:0000160 - UV light sensitivity, TO:0000731 - lignin content, TO:0000011 - nitrogen sensitivity, TO:0000051 - stem strength, TO:0000733 - lignin biosynthesis trait, TO:0000074 - blast disease	
9683	4CL4	Os4CL4	4-COUMARATE:COENZYME A LIGASE 4	4-coumarate:coenzyme A ligase 4	4-COUMARATE:COENZYME A LIGASE 4		6	Q67W82. EC 6.2.1.12 Os4CL4 participates in defense against wounding. 4CL in Zhang et al. 2009.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0656500	LOC_Os06g44620.1, LOC_Os06g44620.2				GO:0009635 - response to herbicide, GO:0005524 - ATP binding, GO:0009698 - phenylpropanoid metabolic process, GO:0009408 - response to heat, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0009751 - response to salicylic acid stimulus	TO:0000432 - temperature response trait, TO:0000058 - herbicide sensitivity	
9684	4CL5	Os4CL5, 4CL3, Os4CL3	4-COUMARATE:COENZYME A LIGASE 5	4-coumarate:coenzyme A ligase 5, 4-hydroxycinnamate CoA ligase 3	4-COUMARATE:COENZYME A LIGASE 5		8	Q6ZAC1. EC 6.2.1.12 Os4CL5 participates in defense against wounding. 4CL3 in Koshiba et al. 2013. GO:1990169: stress response to copper ion. GO:1990170: stress response to cadmium ion. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Coloration - Anthocyanin	Os08g0448000	LOC_Os08g34790.1				GO:0009718 - anthocyanin biosynthetic process, GO:0046688 - response to copper ion, GO:0002238 - response to molecule of fungal origin, GO:0005524 - ATP binding, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0050832 - defense response to fungus, GO:0009698 - phenylpropanoid metabolic process, GO:0009408 - response to heat, GO:0009807 - lignan biosynthetic process, GO:0052386 - cell wall thickening, GO:0046686 - response to cadmium ion	TO:0000432 - temperature response trait, TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000326 - leaf color	
9685	EPR1	OsEPR1, OsLHY, LHY	EARLY PHYTOCHROME RESPONSIVE 1	MYB transcription factor, OsLHY-like_chr.6, EARLY PHYTOCHROME RESPONSIVE1, EARLY PHYTOCHROME RESPONSIVE 1			6	a rice ortholog of Arabidopsis gene for circadian clock component. OsLHY in Wei et al. 2021.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0728700	LOC_Os06g51260.2, LOC_Os06g51260.1				GO:0003677 - DNA binding, GO:0048653 - anther development, GO:0009555 - pollen development, GO:0009629 - response to gravity, GO:0007623 - circadian rhythm, GO:0010208 - pollen wall assembly, GO:0009266 - response to temperature stimulus	TO:0000437 - male sterility, TO:0000432 - temperature response trait, TO:0002693 - gravity response trait	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
9686	DOF2	OsDof, OsDof2, Dof2, OsDof-2	DNA BINDING WITH ONE FINGER 2	Dof-type zinc finger, Dof zinc factor 2, Dof transcription factor 2	DNA BINDING WITH ONE FINGER 2		1			Os01g0264000	LOC_Os01g15900.1				GO:0007623 - circadian rhythm, GO:0003677 - DNA binding		PO:0025034 - leaf 
9687	ERF12	OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70	ETHYLENE RESPONSE FACTOR 12	ethylene response factor 12, drought-responsive ethylene response factor 1, drought-responsive ERF 1, APETALA2/ethylene-responsive element binding protein 70	ETHYLENE RESPONSE FACTOR 12		8		 Tolerance and resistance - Stress tolerance	Os08g0454000	LOC_Os08g35240.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent	TO:0000276 - drought tolerance	
9688	ERF86	DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1	ETHYLENE RESPONSE FACTOR 86	drought-responsive ethylene response factor 2, drought-responsive ERF 2, ethylene response factor 86, ethylene response factor 1, APETALA2/ethylene-responsive element binding protein 74	ETHYLENE RESPONSE FACTOR 86		7		 Tolerance and resistance - Stress tolerance	Os07g0410700	LOC_Os07g22770.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
9689	ERF104	DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152, RAP2, OsRAP2	ETHYLENE RESPONSE FACTOR 104	drought-responsive ethylene response factor 3, drought-responsive ERF 3, ethylene response factor 104, APETALA2/ethylene-responsive element binding protein 152	ETHYLENE RESPONSE FACTOR 104		8		 Tolerance and resistance - Stress tolerance,  Other	Os08g0474000	LOC_Os08g36920.1				GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
9690	ERF28	OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G	ETHYLENE RESPONSE FACTOR 28	drought-responsive ethylene response factor 4, drought-responsive ERF 4, ethylene response factor 28, ethylene response factor 29, APETALA2/ethylene-responsive element binding protein 161, Dehydration-responsive element-binding protein 1J, Dehydration-responsive element-binding protein 1I	ETHYLENE RESPONSE FACTOR 28		8	Q0J3Y6, Q0J3Y7. OsERF#028(LOC_Os08g43200) and OsERF#029(LOC_Os08g43210) in PMID:16407444. OsDREB1J(LOC_Os08g43200) and OsDREB1I(LOC_Os08g43210) in PMID:23077584. CI261507, CI268958. OsDREB1G in Chen et al. 2008 and Todaka et al. 2012.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os08g0545500	LOC_Os08g43200.1, LOC_Os08g43210.1				GO:0009845 - seed germination, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	PO:0007022 - seed imbibition stage 
9691	ERF103	DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130, OsERF109	ETHYLENE RESPONSE FACTOR 103	drought-responsive ethylene response factor 5, drought-responsive ERF 5, ethylene response factor 103, APETALA2/ethylene-responsive element binding protein 130	ETHYLENE RESPONSE FACTOR 103		2	OsERF109 in Park et al. 2021. GO:1901370: response to glutathione.	 Tolerance and resistance - Stress tolerance	Os02g0764700	LOC_Os02g52670.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000303 - cold tolerance	
9693	ERF106	DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111, OsERF106MZ, ERF106MZ	ETHYLENE RESPONSE FACTOR 106	drought-responsive ethylene response factor 7, drought-responsive ERF 7, ethylene response factor 106, APETALA2/ethylene-responsive element binding protein 111	ETHYLENE RESPONSE FACTOR 106	Oserf106mz	8	MZ561461. a rice RAV subfamily member. GO:2000280: regulation of root development.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os08g0537900	LOC_Os08g42550.4, LOC_Os08g42550.3, LOC_Os08g42550.2, LOC_Os08g42550.1, LOC_Os08g42550.6, LOC_Os08g42550.5				GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009738 - abscisic acid mediated signaling, GO:0080022 - primary root development, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0048364 - root development, GO:0050801 - ion homeostasis, GO:0005737 - cytoplasm	TO:0000656 - root development trait, TO:0000608 - sodium content, TO:0000019 - seedling height, TO:0000516 - relative root length, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0000609 - potassium content, TO:0000654 - shoot development trait, TO:0006001 - salt tolerance	PO:0003011 - root vascular system , PO:0005772 - exodermis , PO:0009005 - root , PO:0007615 - flower development stage , PO:0009046 - flower , PO:0007520 - root development stage , PO:0007057 - 0 seed germination stage , PO:0009010 - seed , PO:0005427 - sclerenchyma , PO:0020127 - primary root 
9694	ERF124	DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158	ETHYLENE RESPONSE FACTOR 124	drought-responsive ethylene response factor 8, drought-responsive ERF 8, ethylene response factor 124, APETALA2/ethylene-responsive element binding protein 158	ETHYLENE RESPONSE FACTOR 124		12		 Tolerance and resistance - Stress tolerance	Os12g0168100	LOC_Os12g07030.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0009635 - response to herbicide, GO:0010188 - response to microbial phytotoxin, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000058 - herbicide sensitivity	
9695	ERF11	OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83, DLN69, OsDLN69, ERF17_Ath	ETHYLENE RESPONSE FACTOR 11	ethylene response factor 11, drought-responsive ethylene response factor 9, drought-responsive ERF 9, APETALA2/ethylene-responsive element binding protein 83, DLN repressor 69, DLN motif protein 69	ETHYLENE RESPONSE FACTOR 11		2		 Tolerance and resistance - Stress tolerance	Os02g0781300	LOC_Os02g54050.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0006001 - salt tolerance	
9696	ERF84	OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97	ETHYLENE RESPONSE FACTOR 84	drought-responsive ethylene response factor 10, drought-responsive ERF 10, ethylene response factor 84, APETALA2/ethylene-responsive element binding protein 97	ETHYLENE RESPONSE FACTOR 84		5		 Tolerance and resistance - Stress tolerance	Os05g0564700	LOC_Os05g49010.1						
9697	ERF51	OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156, RAP2-13, OsRAP2-13	ETHYLENE RESPONSE FACTOR 51	drought-responsive ethylene response factor 11, drought-responsive ERF 11, ethylene response factor 51, APETALA2/ethylene-responsive element binding protein 156	ETHYLENE RESPONSE FACTOR 51		10		 Tolerance and resistance - Stress tolerance	Os10g0371100	LOC_Os10g22600.1				GO:0009873 - ethylene mediated signaling pathway, GO:0031347 - regulation of defense response, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
9698	ERF96	DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2, OsERF36	ETHYLENE RESPONSE FACTOR 96	drought-responsive ethylene response factor 12, drought-responsive ERF 12, ethylene response factor 96, APETALA2/ethylene-responsive element binding protein 116, OsAPETALA2	ETHYLENE RESPONSE FACTOR 96		10	OsAP2.1 (the long form of the transcript), OsAP2.2 (the short form of the transcript), OsERF36 in Uji et al. 2019.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os10g0562900	LOC_Os10g41330.2, LOC_Os10g41330.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0020039 - leaf lamina 
9699	ERF77	OsAP2-39, AP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149, DLN121, OsDLN121	ETHYLENE RESPONSE FACTOR 77	APETALA-2-like transcription factor OsAP2-39, ethylene response factor 77, APETALA2/ethylene-responsive element binding protein 149, DLN repressor 121, DLN motif protein 121	ETHYLENE RESPONSE FACTOR 77		4		 Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0610400	LOC_Os04g52090.1				GO:0006351 - transcription, DNA-dependent, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0010366 - negative regulation of ethylene biosynthetic process	TO:0000303 - cold tolerance, TO:0002759 - grain number, TO:0000396 - grain yield, TO:0000276 - drought tolerance	
9701	NCED1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3, OsNCED9, NCED9	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1	9-cis-epoxycarotenoid dioxygenase 1, 9-Cis-Epoxycarotenoid Dioxygenase 3	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1	nced3, nced3-1, nced3-2	3	AC120531. AY838899. OsNCED3 in Welsch et al. 2008, Liu et al. 2012, Xu et al. 2013,  Teng et al. 2014 , Chen et al. 2014, Liang et al. 2014, Shi et al. 2015, Du et al. 2015, Li et al. 2015, Zhao et al. 2016, Hong et al. 2016, Mao et al. 2017, He et al. 2018, Liu et al. 2018, Huang et al., 2018, Hwang et al., 2018, Liu et al. 2019, Chen et al. 2019, Gong et al. 2019, Kim et al. 2019, Cao et al. 2020, Suriyasak et al. 2020, Dong et al. 2021, Verma et al. 2019, Santosh et al. 2021, Li et al. 2021, Yu et al. 2021, Da Costa et al. 2021, Yang et al. 2022, He et al. 2022, Yi et al. 2022, Zhou et al. 2022, Wen et al. 2022, Shi et al. 2020, Li et al. 2023, Um et al. 2022, Yan et al. 2023, Long et al. 2023, Xie et al. 2024, Feng et al. 2024, Li et al. 2024, Dai et al. 2024. OsNCED9 in Taniguchi et al. 2023. GO:0098771: inorganic ion homeostasis. TO:0006047: calcium content trait. GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000033: regulation of seed dormancy process. GO:1900057: positive regulation of leaf senescence. TO:0020097: stomatal opening. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. GO:1902584: positive regulation of response to water deprivation. GO:2000280: regulation of root development.	 Character as QTL - Plant growth activity,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Dormancy,  Character as QTL - Germination,  Biochemical character	Os03g0645900	LOC_Os03g44380.1				GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0001666 - response to hypoxia, GO:0009651 - response to salt stress, GO:0009845 - seed germination, GO:0009753 - response to jasmonic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0006979 - response to oxidative stress, GO:0010446 - response to alkalinity, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0010162 - seed dormancy, GO:0010150 - leaf senescence, GO:0010119 - regulation of stomatal movement, GO:0030104 - water homeostasis, GO:0010029 - regulation of seed germination, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0002213 - defense response to insect, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0048364 - root development, GO:0009507 - chloroplast, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0009688 - abscisic acid biosynthetic process, GO:0002237 - response to molecule of bacterial origin	TO:0006002 - proline content, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000015 - oxygen sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000481 - alkali sensitivity, TO:0000633 - relative total dry weight, TO:0001016 - relative chlorophyll content, TO:0000340 - total soluble sugar content, TO:0000696 - starch content, TO:0000605 - hydrogen peroxide content, TO:0000608 - sodium content, TO:0000609 - potassium content, TO:0000525 - sodium to potassium content ratio, TO:0002657 - oxidative stress, TO:0000357 - growth and development trait, TO:0000253 - seed dormancy, TO:0000249 - leaf senescence, TO:0000522 - stomatal conductance, TO:0000424 - brown planthopper resistance, TO:0002668 - jasmonic acid content, TO:0000227 - root length, TO:0000078 - root dry weight, TO:0000578 - root fresh weight, TO:0000290 - flavonoid content, TO:0000333 - sugar content, TO:0002673 - amino acid content, TO:0000114 - flooding related trait	PO:0007057 - 0 seed germination stage , PO:0001054 - 4 leaf senescence stage , PO:0009010 - seed , PO:0008037 - seedling , PO:0009006 - shoot system 
9702	_	OsRLG5	_	Oryza sativa Receptor like kinase Gene 5			1		 Biochemical character								
9703	ABCG5	OsABCG5	ABC TRANSPORTER G FAMILY MEMBER 5	ATP-binding cassette protein subfamily G member 5, ABC transporter superfamily ABCG subgroup member 5	ABC TRANSPORTER G FAMILY MEMBER 5		3	Q8H8V7. GO:0140359: ABC-type transporter activity. GO:0071456:  cellular response to hypoxia. GO:0071470: cellular response to osmotic stress. GO:0071472: cellular response to salt stress. GO:1901002: positive regulation of response to salt stress. GO:2000032: regulation of secondary shoot formation. GO:1902074: response to salt.	 Biochemical character	Os03g0281900	LOC_Os03g17350.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0048226 - Casparian strip, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0016887 - ATPase activity, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0055075 - potassium ion homeostasis, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009753 - response to jasmonic acid stimulus, GO:0048225 - suberin network, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0055078 - sodium ion homeostasis, GO:0010345 - suberin biosynthetic process		
9704	ABCG6	OsABCG6	ABC TRANSPORTER G FAMILY MEMBER 6	ATP-binding cassette protein subfamily G member 6, ABC transporter superfamily ABCG subgroup member 6	ABC TRANSPORTER G FAMILY MEMBER 6		3			Os03g0282100	LOC_Os03g17370.1						
9705	ABCG3	OsABCG3	ABC TRANSPORTER G FAMILY MEMBER 3	ATP-binding cassette protein subfamily G member 3, ABC transporter superfamily ABCG subgroup member 3	ABC TRANSPORTER G FAMILY MEMBER 3		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0836600	LOC_Os01g61940.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
9706	GLK1	OsGLK1, OsGlk1, GLK1	GOLDEN2-LIKE1	light-related transcription factor OsGLK1, Golden2-like 1, G2-like 1, OsGOLDEN-LIKE1, GOLDEN-LIKE1		glk1	6	Q5Z5I4. orthologous to maize Golden2-like 1. AF318581.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0348800	LOC_Os06g24070.1				GO:0009658 - chloroplast organization, GO:0010638 - positive regulation of organelle organization, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0009767 - photosynthetic electron transport chain, GO:0009765 - photosynthesis, light harvesting, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0010109 - regulation of photosynthesis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0043067 - regulation of programmed cell death, GO:0048658 - tapetal layer development	TO:0002715 - chloroplast development trait, TO:0000421 - pollen fertility	
9707	TRX14	OsTRX m2, TRX m2, OsTRXM2, TRXM2, OsTrx14, Trx14	THIOREDOXIN 14	thioredoxin M2, THIOREDOXIN M-TYPE 2	THIOREDOXIN 14		4	Q7X8R5. a chloroplast m type thioredoxin.	 Biochemical character	Os04g0530600	LOC_Os04g44830.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0006810 - transport, GO:0022900 - electron transport chain, GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process		
9708	TRX29	OsTRX m5, Ostrxm5, OsTRXM5, TRXM5, OsTrxm, OsTrx29, Trx29	THIOREDOXIN 29	thioredoxin m, thioredoxin m-type, thioredoxin M5, Thioredoxin m-type isoform, THIOREDOXIN M-TYPE 5	THIOREDOXIN 29		12	Q9ZP20. AJ005841. a chloroplast m type thioredoxin. XB21 interacting protein (XB21IP). OsTrxm in Park  et al. 2019, Chi et al., 2008. GO:1903409: reactive oxygen species biosynthetic process. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0188700	LOC_Os12g08730.1				GO:0042744 - hydrogen peroxide catabolic process, GO:0022900 - electron transport chain, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0006662 - glycerol ether metabolic process, GO:0006810 - transport, GO:0050832 - defense response to fungus, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009657 - plastid organization, GO:0009055 - electron carrier activity, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0045454 - cell redox homeostasis	TO:0000605 - hydrogen peroxide content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000207 - plant height, TO:0000439 - fungal disease resistance	
9709	_	OsRpl6-2, Rpl6-2	_	mitochondrial ribosomal protein L6-2			8	CI260120. 		Os08g0484301					GO:0005840 - ribosome, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
9710	_	OsRpl6-1	_	mitochondrial ribosomal protein L6-1			3			Os03g0725000	LOC_Os03g51510.1, LOC_Os03g51510.2, LOC_Os03g51510.3				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0005840 - ribosome		
9711	_	GADPH, OsGAPDHB, GAPDHB, OsGAPB, GAPB	_	glyceraldehyde-3-phosphate dehydrogenase, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic GAPDH B subunit, beta subunit of glyceraldehyde-3-phosphate dehydrogenase, beta subunit of GAPDH			3		 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Taste,  Biochemical character	Os03g0129300	LOC_Os03g03720.1, LOC_Os03g03720.2				GO:0006006 - glucose metabolic process, GO:0051287 - NAD or NADH binding, GO:0019685 - photosynthesis, dark reaction, GO:0050661 - NADP or NADPH binding, GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity, TO:0000495 - chlorophyll content, TO:0000442 - plant fresh weight, TO:0000087 - aroma	
9712	_	BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2	_	rice 2-Cys peroxiredoxin BAS1, chloroplast 2-Cys peroxiredoxin BAS1, 2-Cys Prx BAS1, 2-Cys peroxiredoxin A, Peroxiredoxin 2			2	a rice chloroplastic 2-Cys peroxiredoxin (thioredoxin peroxidase). Q6ER94. BAD27915. AM039889. XB21 interacting protein (XB21IP). a rice homologue gene of At2-CysPrxB. OsPRX2 in Mao et al. 2018. GO:0090332: stomatal closure. GO:0035864: response to potassium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0537700	LOC_Os02g33450.1, LOC_Os02g33450.2				GO:0010319 - stromule, GO:0051920 - peroxiredoxin activity, GO:0042742 - defense response to bacterium, GO:0005515 - protein binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0009409 - response to cold, GO:0009570 - chloroplast stroma, GO:0009579 - thylakoid, GO:0048046 - apoplast, GO:0009941 - chloroplast envelope, GO:0009555 - pollen development, GO:0004601 - peroxidase activity, GO:0042594 - response to starvation	TO:0000008 - potassium sensitivity, TO:0002657 - oxidative stress	PO:0009006 - shoot system , PO:0001007 - pollen development stage , PO:0025281 - pollen , PO:0025034 - leaf , PO:0009010 - seed 
9713	RBCS4	RbcS, RbcS4, OsRBCS4, OsRbcS4	RUBISCO SMALL SUBUNIT 4	nuclear encoded small subunit of ribulose-1, 5-bisphosphate carboxylase/oxygenase, RuBisCO small subunit 4, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 4	RUBISCO SMALL SUBUNIT 4		12		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity	Os12g0292400	LOC_Os12g19470.2, LOC_Os12g19470.1				GO:0009853 - photorespiration, GO:0015979 - photosynthesis, GO:0004497 - monooxygenase activity, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide	TO:0000457 - total biomass yield, TO:0001015 - photosynthetic rate, TO:0000011 - nitrogen sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000396 - grain yield	
9714	RPOTM	OsRpoTm	RNA POLYMERASE SUBUNIT TM	Nuclear-Encoded Mitochondrial RNA Polymerase	RNA POLYMERASE SUBUNIT TM		9	AB120431.	 Biochemical character	Os09g0246200	LOC_Os09g07120.1, LOC_Os09g07120.2				GO:0003899 - DNA-directed RNA polymerase activity, GO:0003677 - DNA binding, GO:0005739 - mitochondrion		
9715	YGL13	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA	YELLOW-GREEN LEAF 13	Sigma factor SIG1, plastid sigma factor SIG1, sigma A, sigma factor A, yellow-green leaf 13, yellow green leaf 13	SIGMA FACTOR A	ygl13	8	AB005290.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Other,  Coloration - Others	Os08g0163400	LOC_Os08g06630.3, LOC_Os08g06630.1				GO:0009658 - chloroplast organization, GO:0009416 - response to light stimulus, GO:0003700 - transcription factor activity, GO:0006352 - transcription initiation, GO:0003677 - DNA binding, GO:0016987 - sigma factor activity	TO:0000447 - filled grain number, TO:0002715 - chloroplast development trait, TO:0000207 - plant height, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000180 - spikelet fertility, TO:0000295 - chlorophyll-b content	
9716	SIG2B	OsSIG2B	SIGMA FACTOR 2B	Sigma factor SIG2B	SIGMA FACTOR 2B		3	AB095095.	 Other	Os03g0271100	LOC_Os03g16430.1, LOC_Os03g16430.2				GO:0006352 - transcription initiation, GO:0016987 - sigma factor activity, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
9717	SIG5	OsSIG5, OsSig5, Os Sig5	SIGMA FACTOR 5	Sigma factor SIG5, SIG5 homolog	SIGMA FACTOR 5		5	AB096011, AB096071.	 Other	Os05g0586600	LOC_Os05g50930.1, LOC_Os05g50930.2				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009536 - plastid, GO:0016987 - sigma factor activity, GO:0003899 - DNA-directed RNA polymerase activity, GO:0006352 - transcription initiation		
9718	SIG6	OsSIG6, OsSig6	SIGMA FACTOR 6	Sigma factor SIG6	SIGMA FACTOR 6		8	AB096012.	 Other	Os08g0242800	LOC_Os08g14450.1				GO:0006352 - transcription initiation, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0016987 - sigma factor activity		
9719	PSAA	PsaA, psaA, PsAA1, psaA1	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaA, photosystem I subunit PsaA, photosystem I P700 chlorophyll A apoprotein A1, PSI P700 apoprotein A1, photosystem I P700 apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A1, photosystem I subunit A1			Pt	P0C354, P0C355. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46121: Nip050 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33996 (Japonica Group chloroplast genome). GU592207:ADD62834 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osp1g00340				GO:0009055 - electron carrier activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0009522 - photosystem I, GO:0018298 - protein-chromophore linkage, GO:0015979 - photosynthesis, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0016491 - oxidoreductase activity, GO:0000287 - magnesium ion binding, GO:0016168 - chlorophyll binding, GO:0016021 - integral to membrane	TO:0000437 - male sterility	
9720	PSAB	PsaB, psaB, PsAA2, psaA2	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaB, photosystem I subunit PsaB, photosystem I P700 apoprotein A2, PSI P700 apoprotein A2, P700 apoprotein a2, Photosystem I P700 chlorophyll a apoprotein A2, photosystem I subunit A2			Pt	P0C357, P0C358. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46120: Nip049 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33995 (Japonica Group chloroplast genome). GU592207:ADD62833 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00330				GO:0009522 - photosystem I, GO:0016168 - chlorophyll binding, GO:0000287 - magnesium ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0018298 - protein-chromophore linkage, GO:0009536 - plastid, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009055 - electron carrier activity, GO:0010287 - plastoglobule, GO:0015979 - photosynthesis, GO:0016491 - oxidoreductase activity		
9721	SIG2A	OsSIG2A, OsSig2A	SIGMA FACTOR 2A	Sigma factor SIG2A, Sigma factor 2A	SIGMA FACTOR 2A		11	AB095094.	 Other	Os11g0448400	LOC_Os11g26160.1				GO:0003677 - DNA binding, GO:0016987 - sigma factor activity, GO:0003700 - transcription factor activity, GO:0006352 - transcription initiation		
9722	SIG3	OsSIG3	SIGMA FACTOR 3	Sigma factor SIG3	SIGMA FACTOR 3		5		 Other	Os05g0589200	LOC_Os05g51150.5, LOC_Os05g51150.4, LOC_Os05g51150.1, LOC_Os05g51150.3				GO:0006352 - transcription initiation, GO:0003677 - DNA binding, GO:0016987 - sigma factor activity, GO:0003700 - transcription factor activity		
9723	GLK2	OsGLK2, OsGlk2	GOLDEN2-LIKE2	light-related transcription factor OsGLK2, Golden2-like 2, G2-like 2		glk2	1	AF318582, AF318583. Q5NAN5. GO:0000976: transcription regulatory region sequence-specific DNA binding.	 Coloration - Chlorophyll	Os01g0239000	LOC_Os01g13740.2, LOC_Os01g13740.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009767 - photosynthetic electron transport chain, GO:0009765 - photosynthesis, light harvesting, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0010109 - regulation of photosynthesis, GO:0003700 - transcription factor activity, GO:0009773 - photosynthetic electron transport in photosystem I	TO:0000495 - chlorophyll content	
9724	NSP1	Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14	NODULATION SIGNALING PATHWAY 1	NODULATION SIGNALING PATHWAY1, Symbiotic GRAS-Type Transcription Factor NSP1, GRAS protein 14		nsp1, osnsp1	3	GO:2000032: regulation of secondary shoot formation.		Os03g0408600	LOC_Os03g29480.1				GO:0043565 - sequence-specific DNA binding, GO:0042446 - hormone biosynthetic process, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
9725	NSP2	Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13, OsGRAS12, GRAS12	NODULATION SIGNALING PATHWAY 2	Nodulation Signalling Pathway2, Symbiotic GRAS-Type Transcription Factor NSP2, GRAS protein 13	GRAS PROTEIN 13	nsp2, osnsp2	3	OsGRAS12 in Dutta et al. 2021. GO:1901601: strigolactone biosynthetic process. GO:1902347: response to strigolactone	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0263300	LOC_Os03g15680.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding	TO:0000476 - growth hormone content, TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000329 - tillering ability, TO:0006001 - salt tolerance	
9726	ENODL1	OsENODL1, OsELA1, ELA1	EARLY NODULIN LIKE PROTEIN 1	early nodulin-like protein 1, early nodulin-like arabinogalactan protein 1, eNod-like AGP 1	EARLY NODULIN LIKE PROTEIN 1		1	Q5JNJ5. EU282466. Phytocyanin. LOC_Os01g54430.	 Biochemical character	Os01g0748150	LOC_Os01g54430.1				GO:0005773 - vacuole, GO:0009055 - electron carrier activity, GO:0031225 - anchored to membrane, GO:0005507 - copper ion binding, GO:0032578 - aleurone grain membrane		
9727	ENODL2	OsENODL2	EARLY NODULIN LIKE PROTEIN 2	early nodulin-like protein 2	EARLY NODULIN LIKE PROTEIN 2		1	Phycocyanin. LOC_Os01g10480.		Os01g0201500	LOC_Os01g10480.1				GO:0016021 - integral to membrane		
9728	ENODL3	OsENODL3	EARLY NODULIN LIKE PROTEIN 3	early nodulin-like protein 3	EARLY NODULIN LIKE PROTEIN 3		1	Phycocyanin. LOC_Os01g16610.	 Biochemical character	Os01g0272700	LOC_Os01g16610.1				GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane		
9729	ENODL4	OsENODL4	EARLY NODULIN LIKE PROTEIN 4	early nodulin-like protein 4	EARLY NODULIN LIKE PROTEIN 4		1	Phycocyanin. LOC_Os01g17470.	 Biochemical character	Os01g0281600	LOC_Os01g17470.1, LOC_Os01g17470.2				GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity		
9730	ENODL5	OsENODL5	EARLY NODULIN LIKE PROTEIN 5	early nodulin-like protein 5	EARLY NODULIN LIKE PROTEIN 5		1	Phytocyanin. C74750. LOC_Os01g57880.	 Biochemical character	Os01g0788700	LOC_Os01g57880.1				GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9731	ENODL6	OsENODL6, OsELA2, ELA2, OsEnS-24	EARLY NODULIN LIKE PROTEIN 6	early nodulin-like protein 6, early nodulin-like arabinogalactan protein 2, endosperm-specific gene 24, eNod-like AGP 2	EARLY NODULIN LIKE PROTEIN 6		2	Phytocyanin. LOC_Os02g06670.	 Biochemical character	Os02g0162200	LOC_Os02g06670.1, LOC_Os02g06690.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9732	ENODL7	OsENODL7	EARLY NODULIN LIKE PROTEIN 7	early nodulin-like protein 7	EARLY NODULIN LIKE PROTEIN 7		2	Phytocyanin. LOC_Os02g06690. Os02g0162400 (in Rap2 (build4), Rap3 (build5)).	 Biochemical character						GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity		
9733	ENODL8	OsENODL8	EARLY NODULIN LIKE PROTEIN 8	early nodulin-like protein 8	EARLY NODULIN LIKE PROTEIN 8		2	Phycocyanin. LOC_Os02g48820.	 Biochemical character	Os02g0720100	LOC_Os02g48820.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane		
9734	ENODL9	OsENODL9	EARLY NODULIN LIKE PROTEIN 9	early nodulin-like protein 9	EARLY NODULIN LIKE PROTEIN 9		2	Phytocyanin. CT835340. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence. plastocyanin-like domain containing protein.	 Biochemical character	Os02g0725500	LOC_Os02g49350.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane		
9735	ENODL10	OsENODL10	EARLY NODULIN LIKE PROTEIN 10	early nodulin-like protein 10	EARLY NODULIN LIKE PROTEIN 10		3	Phycocyanin. LOC_Os03g02400.	 Biochemical character	Os03g0115000	LOC_Os03g02400.1				GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9736	ENODL11	OsENODL11	EARLY NODULIN LIKE PROTEIN 11	early nodulin-like protein 11	EARLY NODULIN LIKE PROTEIN 11		3	Phycocyanin. LOC_Os03g44630.	 Biochemical character	Os03g0648500	LOC_Os03g44630.1				GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9737	ENODL12	OsENODL12	EARLY NODULIN LIKE PROTEIN 12	early nodulin-like protein 12	EARLY NODULIN LIKE PROTEIN 12		3	Phycocyanin. LOC_Os03g55120.	 Biochemical character	Os03g0758500	LOC_Os03g55120.1				GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity		
9738	ENODL13	OsENODL13	EARLY NODULIN LIKE PROTEIN 13	early nodulin-like protein 13	EARLY NODULIN LIKE PROTEIN 13		4	Phycocyanin. LOC_Os04g34480.	 Biochemical character	Os04g0422200	LOC_Os04g34480.1				GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9739	ENODL14	OsENODL14	EARLY NODULIN LIKE PROTEIN 14	early nodulin-like protein 14	EARLY NODULIN LIKE PROTEIN 14		4	Phycocyanin. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character	Os04g0673800	LOC_Os04g57750.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0046658 - anchored to plasma membrane		
9740	ENODL15	OsENODL15	EARLY NODULIN LIKE PROTEIN 15	early nodulin-like protein 15	EARLY NODULIN LIKE PROTEIN 15		5	Phytocyanin. C73014. LOC_Os05g49580.	 Biochemical character	Os05g0570900	LOC_Os05g49580.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0016021 - integral to membrane, GO:0046658 - anchored to plasma membrane		
9741	ENODL16	OsENODL16	EARLY NODULIN LIKE PROTEIN 16	early nodulin-like protein 16	EARLY NODULIN LIKE PROTEIN 16		6	Phycocyanin. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character	Os06g0286228	LOC_Os06g17730.1				GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9742	NRFG3	OsENODL17, ENODL17, OsNRFG3	NEO-TETRAPLOID RICE FERTILITY RELATED GENE 3	early nodulin-like protein 17, neo-tetraploid rice fertility related gene 3	EARLY NODULIN LIKE PROTEIN 17		6	Phycocyanin. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - panicle,  Vegetative organ - Culm,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility	Os06g0553800	LOC_Os06g36010.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane	TO:0000040 - panicle length, TO:0000371 - yield trait, TO:0000592 - 1000-dehulled grain weight, TO:0000421 - pollen fertility, TO:0000455 - seed set percent, TO:0000207 - plant height	PO:0009072 - plant ovary , PO:0009073 - stigma , PO:0009066 - anther 
9743	ENODL18	OsENODL18, OsELA3, ELA3, EN20, OsEN20	EARLY NODULIN LIKE PROTEIN 18	early nodulin-like protein 18, early nodulin-like arabinogalactan protein 3, eNod-like AGP 3, early nodulin-20	EARLY NODULIN LIKE PROTEIN 18		6	Phytocyanin. Cupredoxin domain containing protein. AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0681200	LOC_Os06g46740.1				GO:0009414 - response to water deprivation, GO:0046658 - anchored to plasma membrane, GO:0042542 - response to hydrogen peroxide, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0005507 - copper ion binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0009010 - seed 
9744	ENODL19	OsENODL19	EARLY NODULIN LIKE PROTEIN 19	early nodulin-like protein 19	EARLY NODULIN LIKE PROTEIN 19		7	Phycocyanin. LOC_Os07g02200.	 Biochemical character	Os07g0112700	LOC_Os07g02200.1				GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane, GO:0005507 - copper ion binding		
9745	ENODL20	OsENODL20	EARLY NODULIN LIKE PROTEIN 20	early nodulin-like protein 20	EARLY NODULIN LIKE PROTEIN 20		8	Phytocyanin. AK109468. LOC_Os08g17160. Os08g0273300 (in Rap1 (build3), Rap3 (build5)).	 Biochemical character		LOC_Os08g17160				GO:0046658 - anchored to plasma membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9746	ENODL21	OsENODL21	EARLY NODULIN LIKE PROTEIN 21	early nodulin-like protein 21	EARLY NODULIN LIKE PROTEIN 21		9	Phycocyanin. LOC_Os09g38540.	 Biochemical character	Os09g0557900	LOC_Os09g38540.1				GO:0016021 - integral to membrane, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0046658 - anchored to plasma membrane		
9747	ENODL22	OsENODL22	EARLY NODULIN LIKE PROTEIN 22	early nodulin-like protein 22	EARLY NODULIN LIKE PROTEIN 22		11	Phycocyanin. LOC_Os11g29910.	 Biochemical character	Os11g0491500	LOC_Os11g29910.1				GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane		
9748	ENODL23	OsENODL23	EARLY NODULIN LIKE PROTEIN 23	early nodulin-like protein 23	EARLY NODULIN LIKE PROTEIN 23		12	Phycocyanin. LOC_Os12g05470.	 Biochemical character	Os12g0150500	LOC_Os12g05470.1				GO:0046658 - anchored to plasma membrane, GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9749	ENODL24	OsENODL24	EARLY NODULIN LIKE PROTEIN 24	early nodulin-like protein 24	EARLY NODULIN LIKE PROTEIN 24		12	Phytocyanin. CT835529. LOC_Os12g26880.	 Biochemical character	Os12g0454600	LOC_Os12g26880.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0046658 - anchored to plasma membrane		
9750	UCL1	OsUCL1	UCLACYANIN-LIKE PROTEIN 1	uclacyanin-like protein 1	UCLACYANIN-LIKE PROTEIN		1	Phytocyanin. CI165732.		Os01g0786500	LOC_Os01g57690.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9751	UCL2	OsUCL2	UCLACYANIN-LIKE PROTEIN 2	uclacyanin-like protein 2	UCLACYANIN-LIKE PROTEIN 2		2	Phytocyanin.		Os02g0256800	LOC_Os02g15710.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9752	UCL3	OsUCL3	UCLACYANIN-LIKE PROTEIN 3	uclacyanin-like protein 3	UCLACYANIN-LIKE PROTEIN 3		2	Phytocyanin.		Os02g0257100	LOC_Os02g15730.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9753	UCL4	OsUCL4	UCLACYANIN-LIKE PROTEIN 4	uclacyanin-like protein 4	UCLACYANIN-LIKE PROTEIN 4		2	Phytocyanin. a basic blue copper protein.		Os02g0653200	LOC_Os02g43660.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9754	UCL5	OsUCL5	UCLACYANIN-LIKE PROTEIN 5	uclacyanin-like protein 5	UCLACYANIN-LIKE PROTEIN 5		2	Phytocyanin.		Os02g0731400	LOC_Os02g49850.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9755	UCL6	OsUCL6	UCLACYANIN-LIKE PROTEIN 6	uclacyanin-like protein 6	UCLACYANIN-LIKE PROTEIN 6		2	Phytocyanin. a gene in rice zygotes with paternal allele-dependent expression.		Os02g0758800	LOC_Os02g52180.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9756	UCL7	OsUCL7	UCLACYANIN-LIKE PROTEIN 7	uclacyanin-like protein 7	UCLACYANIN-LIKE PROTEIN 7		3	Phytocyanin.		Os03g0259100	LOC_Os03g15340.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9757	UCL8	OsUCL8	UCLACYANIN-LIKE PROTEIN 8	uclacyanin-like protein 8, uclacyanin 8	UCLACYANIN-LIKE PROTEIN 8	ucl8	3	LOC_Os03g50140. Phycocyanin. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity	Os03g0709100	LOC_Os03g50140.1				GO:0070623 - regulation of thiamin biosynthetic process, GO:0055070 - copper ion homeostasis, GO:0010109 - regulation of photosynthesis, GO:0009555 - pollen development, GO:0080092 - regulation of pollen tube growth, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0005737 - cytoplasm	TO:0000447 - filled grain number, TO:0002600 - flower organ size, TO:0000180 - spikelet fertility, TO:0000214 - anther shape, TO:0000207 - plant height, TO:0000396 - grain yield	PO:0009010 - seed , PO:0000230 - inflorescence meristem 
9758	UCL9	OsUCL9	UCLACYANIN-LIKE PROTEIN 9	uclacyanin-like protein 9	UCLACYANIN-LIKE PROTEIN 9		3	Phytocyanin.		Os03g0709300	LOC_Os03g50160.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9759	UCL10	OsUCL10	UCLACYANIN-LIKE PROTEIN 10	uclacyanin-like protein 10	UCLACYANIN-LIKE PROTEIN 10		3	Phytocyanin.		Os03g0791300	LOC_Os03g57730.1						
9760	UCL11	OsUCL11	UCLACYANIN-LIKE PROTEIN 11	uclacyanin-like protein 11	UCLACYANIN-LIKE PROTEIN 11		3	Phytocyanin.		Os03g0791366	LOC_Os03g57740.1						
9761	UCL12	OsUCL12	UCLACYANIN-LIKE PROTEIN 12	uclacyanin-like protein 12, plastocyanin-like domain containing protein	UCLACYANIN-LIKE PROTEIN 12		3	Phytocyanin. LOC_Os03g63390. photosynthetic electron transport related gene.	 Biochemical character	Os03g0850900	LOC_Os03g63390.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9762	UCL13	OsUCL13	UCLACYANIN-LIKE PROTEIN 13	uclacyanin-like protein 13	UCLACYANIN-LIKE PROTEIN 13		4	Phytocyanin. Os04g0320800 (in Rap3 (build5)).									
9763	UCL14	OsUCL14	UCLACYANIN-LIKE PROTEIN 14	uclacyanin-like protein 14	UCLACYANIN-LIKE PROTEIN 14		4	Phytocyanin.		Os04g0545400	LOC_Os04g46120.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9764	UCL15	OsUCL15	UCLACYANIN-LIKE PROTEIN 15	uclacyanin-like protein 15	UCLACYANIN-LIKE PROTEIN 15		4	Phytocyanin.		Os04g0545600	LOC_Os04g46130.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9765	UCL16	OsUCL16	UCLACYANIN-LIKE PROTEIN 16	uclacyanin-like protein 16	UCLACYANIN-LIKE PROTEIN 16		6	Phytocyanin.		Os06g0218600	LOC_Os06g11490.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9766	UCL17	OsUCL17	UCLACYANIN-LIKE PROTEIN 17	uclacyanin-like protein 17	UCLACYANIN-LIKE PROTEIN 17		6	Phytocyanin.		Os06g0266400	LOC_Os06g15600.1						
9767	UCL18	OsUCL18	UCLACYANIN-LIKE PROTEIN 18	uclacyanin-like protein 18	UCLACYANIN-LIKE PROTEIN 18		6	Phytocyanin.		Os06g0718400	LOC_Os06g50420.1						
9768	UCL19	OsUCL19	UCLACYANIN-LIKE PROTEIN 19	uclacyanin-like protein 19	UCLACYANIN-LIKE PROTEIN 19		6	Phytocyanin.		Os06g0721800	LOC_Os06g50650.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9769	UCL20	OsUCL20	UCLACYANIN-LIKE PROTEIN 20	uclacyanin-like protein 20	UCLACYANIN-LIKE PROTEIN 20		7	Phytocyanin. AU162427.		Os07g0105000	LOC_Os07g01440.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9770	UCL21	OsUCL21	UCLACYANIN-LIKE PROTEIN 21	uclacyanin-like protein 21	UCLACYANIN-LIKE PROTEIN 21		7	Phytocyanin.		Os07g0165900	LOC_Os07g07170.1						
9771	UCL22	OsUCL22	UCLACYANIN-LIKE PROTEIN 22	uclacyanin-like protein 22	UCLACYANIN-LIKE PROTEIN 22		7	Phytocyanin. AU173380.		Os07g0542900	LOC_Os07g35860.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9772	UCL23	OsUCL23	UCLACYANIN-LIKE PROTEIN 23	uclacyanin-like protein 23	UCLACYANIN-LIKE PROTEIN 23	ucl23	8	Phytocyanin. a member of the plant-specific blue copper protein family of phytocyanins.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os08g0137400	LOC_Os08g04310.1				GO:0009555 - pollen development, GO:0010208 - pollen wall assembly, GO:0005771 - multivesicular body, GO:0009812 - flavonoid metabolic process, GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity, GO:0009651 - response to salt stress	TO:0000455 - seed set percent, TO:0006001 - salt tolerance	PO:0001007 - pollen development stage , PO:0025281 - pollen 
9773	UCL24	OsUCL24	UCLACYANIN-LIKE PROTEIN 24	uclacyanin-like protein 24	UCLACYANIN-LIKE PROTEIN 24		8	Phytocyanin.		Os08g0137800	LOC_Os08g04340.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9774	UCL25	OsUCL25	UCLACYANIN-LIKE PROTEIN 25	uclacyanin-like protein 25	UCLACYANIN-LIKE PROTEIN 25		8	Phytocyanin.		Os08g0137900	LOC_Os08g04350.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9775	UCL26	OsUCL26	UCLACYANIN-LIKE PROTEIN 26	uclacyanin-like protein 26	UCLACYANIN-LIKE PROTEIN 26		8	Phytocyanin.		Os08g0138100	LOC_Os08g04360.1						
9776	UCL27	OsUCL27	UCLACYANIN-LIKE PROTEIN 27	uclacyanin-like protein 27	UCLACYANIN-LIKE PROTEIN 27		8	Phytocyanin. EE591745.		Os08g0138200	LOC_Os08g04370.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9777	UCL28	OsUCL28	UCLACYANIN-LIKE PROTEIN 28	uclacyanin-like protein 28	UCLACYANIN-LIKE PROTEIN 28		8	Phytocyanin.		Os08g0138400					GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9778	UCL29	OsUCL29	UCLACYANIN-LIKE PROTEIN 29	uclacyanin-like protein 29	UCLACYANIN-LIKE PROTEIN 29		8	Phytocyanin.		Os08g0482600	LOC_Os08g37660.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9779	UCL30	OsUCL30	UCLACYANIN-LIKE PROTEIN 30	uclacyanin-like protein 30	UCLACYANIN-LIKE PROTEIN 30		8	Phytocyanin.		Os08g0482700	LOC_Os08g37670.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9780	UCL31	OsUCL31	UCLACYANIN-LIKE PROTEIN 31	uclacyanin-like protein 31	UCLACYANIN-LIKE PROTEIN 31		9	Phytocyanin.		Os09g0469300	LOC_Os09g29390.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9781	UCL32	OsUCL32	UCLACYANIN-LIKE PROTEIN 32	uclacyanin-like protein 32	UCLACYANIN-LIKE PROTEIN 32		9	Phytocyanin. CI646724.		Os09g0541100	LOC_Os09g36940.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9782	UCL33	OsUCL33	UCLACYANIN-LIKE PROTEIN 33	uclacyanin-like protein 33	UCLACYANIN-LIKE PROTEIN 33		9	Phytocyanin. AGP (Arabinogalactan protein). 		Os09g0572700	LOC_Os09g39940.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		PO:0009005 - root , PO:0009010 - seed , PO:0009047 - stem , PO:0025034 - leaf 
9783	UCL34	OsUCL34	UCLACYANIN-LIKE PROTEIN 34	uclacyanin-like protein 34	UCLACYANIN-LIKE PROTEIN 34		11	Phytocyanin. BE040849.		Os11g0426400	LOC_Os11g23930.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9784	UCL35	OsUCL35	UCLACYANIN-LIKE PROTEIN 35	uclacyanin-like protein 35	UCLACYANIN-LIKE PROTEIN 35		11	Phytocyanin.		Os11g0428800	LOC_Os11g24140.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9785	_	OsSCL1	_	stellacyanin-like protein 1			3	Phytocyanin. AK068398.		Os03g0807500	LOC_Os03g59280.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9786	_	OsSCL2	_	stellacyanin-like protein 2			4	Phytocyanin.		Os04g0629200	LOC_Os04g53710.1				GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding		
9787	_	OsSCL3	_	stellacyanin-like protein 3			6	Phytocyanin.		Os06g0216700	LOC_Os06g11310.1				GO:0005507 - copper ion binding, GO:0009055 - electron carrier activity		
9788	_	ROX1	_	Regulator of XA21-1			1	positive regulator of XA21.	 Tolerance and resistance - Disease resistance	Os01g0931400	LOC_Os01g70580.1				GO:0006772 - thiamin metabolic process, GO:0005524 - ATP binding, GO:0016301 - kinase activity, GO:0004788 - thiamin diphosphokinase activity, GO:0009229 - thiamin diphosphate biosynthetic process		
9789	ROX2	OsROX2, OsNSUN3, NSUN3	REGULATOR OF XA21-2	Regulator of XA21-2, NOP/SUN family protein 3, NOP2/Sun domain family member 3, NOP2/ Sun RNA methyltransferase family member 3	REGULATOR OF XA21-2		2	positive regulator of XA21.	 Tolerance and resistance - Disease resistance	Os02g0320100	LOC_Os02g21510.1, LOC_Os02g21510.2, LOC_Os02g21510.3				GO:0003723 - RNA binding, GO:0008168 - methyltransferase activity, GO:0001510 - RNA methylation		
9790	_	ROX3	_	Regulator of XA21-3			6	negative regulator of XA21.	 Tolerance and resistance - Disease resistance	Os06g0231300	LOC_Os06g12530.1						
9791	SD37	OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1, CFL2, OsCFL2, CFL2/OsCYP96B4, BSHT1, OsBSHT1, BSHT1/OsCYP96B4, DDT1, OsDDT1	SEMIDWARF 37	Cytochrome P450 96B4, P-450 96B4, semi-dwarf 37, curled flag leaf 2, dwarf and drought tolerance 1	CYTOCHROME P450 96B4	dss1, sd37, cfl2, cfl2-1, cfl2-2, ddt1	3	OsCYP96B4 might be involved in lipid metabolism and regulate cell elongation. ABF93896. TO:0000832: flag leaf morphology trait. GO:0071554: cell wall organization or biogenesis. GO:0090558: plant epidermis development. GO:2000024: regulation of leaf development. TO:0006064: rolled leaf. GO:2001006: regulation of cellulose biosynthetic process. TO:0000993: cellulose content. TO:0000932: mannose content. PO:0030123: panicle inflorescence. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Biochemical character	Os03g0140400	LOC_Os03g04680.1				GO:0009651 - response to salt stress, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0048366 - leaf development, GO:0030244 - cellulose biosynthetic process, GO:0016049 - cell growth, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0051301 - cell division, GO:0005506 - iron ion binding, GO:0005783 - endoplasmic reticulum, GO:0010029 - regulation of seed germination, GO:0009414 - response to water deprivation, GO:0006629 - lipid metabolic process, GO:0030104 - water homeostasis, GO:0006979 - response to oxidative stress, GO:0009685 - gibberellin metabolic process, GO:0009937 - regulation of gibberellic acid mediated signaling	TO:0000449 - grain yield per plant, TO:0000370 - leaf width, TO:0000391 - seed size, TO:0000300 - glucose content, TO:0006032 - panicle size, TO:0000731 - lignin content, TO:0000655 - leaf development trait, TO:0000135 - leaf length, TO:0002675 - gibberellic acid content, TO:0006001 - salt tolerance, TO:0002637 - leaf size, TO:0002667 - abscisic acid content, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0002657 - oxidative stress, TO:0000520 - stomatal closure rate, TO:0001017 - water use efficiency, TO:0000276 - drought tolerance, TO:0000145 - internode length, TO:0006002 - proline content, TO:0001034 - relative plant height, TO:0000478 - abscisic acid concentration, TO:0000207 - plant height	PO:0020148 - shoot apical meristem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0001050 - leaf development stage , PO:0009005 - root , PO:0009049 - inflorescence 
9792	DMT1	OsMCA1, MCA1, OsDMT1, OsDMT1/OsMCA1	DWARF AND MULTI-TILLERING1	Plasma membrane protein OsMCA1, Mid1-complementing activity1, dwarf and multi-tillering 1, Ca2+-permeable mechanosensitive channel 1	CA2+-PERMEABLE MECHANOSENSITIVE CHANNEL 1	Osdmt1, dmt1	3	Ca2+-permeable mechanosensitive channel. OsMCA1 is involved in regulation of plasma membrane Ca2+ influx and ROS generation induced by hypo-osmotic stress in cultured rice cells. TO:0006047: calcium content trait. TO:0006044: magnesium content. TO:0006048: manganese concentration. TO:0006053: zinc concentration. TO:0000975: grain width.	 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os03g0157300	LOC_Os03g06120.3, LOC_Os03g06120.2, LOC_Os03g06120.1				GO:0005886 - plasma membrane, GO:0009739 - response to gibberellin stimulus, GO:0009685 - gibberellin metabolic process, GO:0005887 - integral to plasma membrane, GO:0048528 - post-embryonic root development, GO:0007638 - mechanosensory behavior, GO:0070509 - calcium ion import, GO:0050801 - ion homeostasis	TO:0000040 - panicle length, TO:0000456 - spikelet number, TO:0000734 - grain length, TO:0002675 - gibberellic acid content, TO:0000346 - tiller number, TO:0000207 - plant height	
9793	FBOX206	OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492, OsTIR1, TIR1, OsFBL16, FBL16	F-BOX PROTEIN 206	Auxin signaling f-box 2, Auxin F-box protein 2, F-box protein 206, transport inhibitor response 1, F-box-type E3 ubiquitin ligase L16	F-BOX PROTEIN 206	Osafb2, afb2	4	Q7XVM8. a miR393 target gene. Os_F0492 in Hua et al. 2011. auxin receptor. GO:1990110: callus formation.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date	Os04g0395600	LOC_Os04g32460.1, LOC_Os04g32460.2				GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0009734 - auxin mediated signaling pathway, GO:0010011 - auxin binding, GO:0019005 - SCF ubiquitin ligase complex, GO:0000822 - inositol hexakisphosphate binding, GO:0005634 - nucleus	TO:0000382 - 1000-seed weight, TO:0000590 - grain weight, TO:0000163 - auxin sensitivity, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0000456 - spikelet number, TO:0000411 - seed length to width ratio, TO:0000428 - callus induction, TO:0000449 - grain yield per plant, TO:0000357 - growth and development trait, TO:0000173 - ethylene sensitivity, TO:0000227 - root length, TO:0000207 - plant height	
9794	TIR1	OsTIR1, OsFbox248, Fbox248, Os_F071, AFB, OsFBL21, FBL21	TRANSPORT INHIBITOR RESPONSE 1	transport inhibitor response 1, Transport Inhibitor Response1, F-box protein 248, Auxin F-box protein, Auxin-signaling F-Box, F-box-type E3 ubiquitin ligase L21		Ostir1, Ostir1/afb, afb, ostir1-2	5	auxin receptor. Q0DKP3. a miR393 target gene. miR393a,b  target gene. TO:0020102: phosphate content. Os_F0717 in Hua et al. 2011. GO:1990110: callus formation.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Root,  Character as QTL - Plant growth activity	Os05g0150500	LOC_Os05g05800.1				GO:0010011 - auxin binding, GO:0051607 - defense response to virus, GO:0000822 - inositol hexakisphosphate binding, GO:0009734 - auxin mediated signaling pathway, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0009635 - response to herbicide	TO:0000020 - black streak dwarf virus resistance, TO:0000040 - panicle length, TO:0000163 - auxin sensitivity, TO:0000428 - callus induction, TO:0000411 - seed length to width ratio, TO:0000357 - growth and development trait, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000456 - spikelet number, TO:0000391 - seed size, TO:0000207 - plant height, TO:0000227 - root length, TO:0000152 - panicle number, TO:0000058 - herbicide sensitivity, TO:0000449 - grain yield per plant, TO:0000173 - ethylene sensitivity	PO:0020110 - scutellum 
9795	MIR393	OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a	MICRORNA393	MICRORNA393, MICRORNA393A	_		1	miRBASE accession: MI0001026. LM379278. target genes: OsTIR1 (Os05g0150500), OsAFB2 (Os04g0395600). The overexpression of miR393 (miR393a and miR393b) negatively regulates mRNAs of OsTIR1 and OsAFB2. GO:1901698: response to nitrogen compound. GO:1990110: callus formation.	 Character as QTL - Yield and productivity,  Vegetative organ - Root,  Other,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape						GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0046688 - response to copper ion, GO:0035195 - gene silencing by miRNA, GO:0010311 - lateral root formation, GO:0051607 - defense response to virus, GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0009411 - response to UV, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000160 - UV light sensitivity, TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000020 - black streak dwarf virus resistance, TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity, TO:0000163 - auxin sensitivity, TO:0000382 - 1000-seed weight, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000011 - nitrogen sensitivity, TO:0000428 - callus induction	
9796	GIF3	OsGIF3, OsGIF1, GIF1, MKB3	GRF-INTERACTING FACTOR 3	GRF1-interacting factor 3, GRF-interacting factor 3, Growth-regulating factor interacting factor 1, GRF interacting factor 1, MAKIBA3, MAKIBA 3	GRF-INTERACTING FACTOR 3	mkb3	3	OsGIF1 in He et al. 2017, Shimano et al. 2018, Li et al. 2018, Lu et al. 2020, Hu et al. 2021. TO:0000892: stem size. an ortholog of Arabidopsis ANGUSTIFOLIA3 (AN3/GIF1). TO:0006064: rolled leaf. TO:1000024: palea morphology trait. GO:2000024: regulation of leaf development.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits,  Vegetative organ - Root	Os03g0733600	LOC_Os03g52320.2, LOC_Os03g52320.1				GO:0048481 - ovule development, GO:0009555 - pollen development, GO:0010229 - inflorescence development, GO:0048366 - leaf development, GO:0008283 - cell proliferation, GO:0009955 - adaxial/abaxial pattern formation, GO:0005634 - nucleus, GO:0016049 - cell growth, GO:0080060 - integument development, GO:0022414 - reproductive process	TO:0000485 - sterility related trait, TO:0000370 - leaf width, TO:0000145 - internode length, TO:0000621 - inflorescence development trait, TO:0000614 - lemma shape, TO:0000657 - spikelet anatomy and morphology trait, TO:0000306 - root thickness, TO:0000484 - seed shape, TO:0000576 - stem length, TO:0000655 - leaf development trait, TO:0000040 - panicle length, TO:0000084 - root number, TO:0000397 - grain size, TO:0002637 - leaf size, TO:0002686 - cell growth and development trait	PO:0001050 - leaf development stage , PO:0000017 - vascular leaf primordium , PO:0007619 - ovule development stage , PO:0001007 - pollen development stage , PO:0001083 - inflorescence development stage 
9797	MRS2-4	OsMGT6, OsMRS2-4	MRS2/MGT FAMILY MEMBER 4	Magnesium transporter 6, MRS2/MGT family member 4	MRS2/MGT FAMILY MEMBER 4		10	A3BV82.		Os10g0545000	LOC_Os10g39790.4, LOC_Os10g39790.2, LOC_Os10g39790.3				GO:0016021 - integral to membrane		
9798	_	PI3K	_	Phosphatidylinositol 3-kinase					 Character as QTL - Germination,  Biochemical character								
9799	_	Os rboh1	_	NADPH oxidase Os rboh1					 Biochemical character								
9800	_	Os rboh2	_	NADPH oxidase Os rboh2					 Character as QTL - Germination,  Biochemical character								
9801	_	Os rboh3	_	NADPH oxidase Os rboh3					 Biochemical character								
9802	_	Os rboh4	_	NADPH oxidase Os rboh4					 Character as QTL - Germination,  Biochemical character								
9803	_	Os rboh5	_	NADPH oxidase Os rboh5					 Character as QTL - Germination,  Biochemical character								
9804	_	Os rboh6	_	NADPH oxidase Os rboh6					 Biochemical character								
9805	_	Os rboh7	_	NADPH oxidase Os rboh7					 Biochemical character								
9806	_	Os rboh8	_	NADPH oxidase Os rboh8					 Biochemical character								
9807	_	Os rboh9	_	NADPH oxidase Os rboh9					 Biochemical character,  Character as QTL - Germination								
9808	BZIP23	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23	b-ZIP TRANSCRIPTION FACTOR 23	Transcription Factor OsbZIP23, bZIP transcription factor 23, AREB/ABF-family protein 1	b-ZIP TRANSCRIPTION FACTOR 23	Osbzip23, OsbZIP23m, OsbZIP23-Crispr-3	2	basic region/leucine zipper motif transcription factor. OsAREB2 in Ke et al. 2014, Li et al. 2017. GO:1901001: negative regulation of response to salt stress. OsbZIP23 promoter from O. rufipogon (KP779639), OsbZIP23 promoter from IR20 (KP779640), OsbZIP23 CDS from O. rufipogon (KP779637), OsbZIP23 CDS from O. nivara (KP779638). target gene of osa-miR1846a/b/c-5p. GO:1901698: response to nitrogen compound. GO:1902584: positive regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Germination,  Seed - Physiological traits - Dormancy	Os02g0766700	LOC_Os02g52780.2, LOC_Os02g52780.1				GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0009651 - response to salt stress, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0046983 - protein dimerization activity, GO:0009738 - abscisic acid mediated signaling, GO:0010029 - regulation of seed germination, GO:0000302 - response to reactive oxygen species, GO:0003700 - transcription factor activity, GO:0009737 - response to abscisic acid stimulus, GO:0019740 - nitrogen utilization	TO:0000333 - sugar content, TO:0000615 - abscisic acid sensitivity, TO:0000153 - relative yield, TO:0000136 - relative water content, TO:0000276 - drought tolerance, TO:0006002 - proline content, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000011 - nitrogen sensitivity, TO:0000396 - grain yield, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress	PO:0007057 - 0 seed germination stage 
9809	SAPK1	OsSAPK1, OsSnRK2.1, SnRK2.1	STRESS/ABA-ACTIVATED PROTEIN KINASE 1	stress/ABA-activated protein kinase 1, Stress-Activated Protein Kinase 1, Sucrose nonfermenting-1-related protein kinase 2.1		Ossapk1, Ossapk1-1, Ossapk1-2	3	SnRK2 protein kinase. AB125302. Q75LR7. C22414. JF733759. one of two causal genes of the key locus qNL3.1 associated with seed germination under salt stress. TO:0000949: seedling growth and development trait.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os03g0390200	LOC_Os03g27280.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0009845 - seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0002213 - defense response to insect, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0009415 - response to water	TO:0000430 - germination rate, TO:0000237 - water stress trait, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	PO:0025034 - leaf , PO:0007022 - seed imbibition stage , PO:0007057 - 0 seed germination stage 
9810	SAPK2	OsSAPK2, OsSnRK2.2, SnRK2.2	STRESS/ABA-ACTIVATED PROTEIN KINASE 2	stress/ABA-activated protein kinase 2, Stress-Activated Protein Kinase 2, Sucrose nonfermenting-1-related protein kinase 2.2	STRESS/ABA-ACTIVATED PROTEIN KINASE 2	sapk2, sapk2-1, sapk2-7	7	SnRK2 protein kinase. AB125303. Q0D4J7. A2YNT8.2 C22640. JF733760. TtPK1 (Triticum tauschii protein kinase 1 ) ortholog.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os07g0622000	LOC_Os07g42940.4, LOC_Os07g42940.1, LOC_Os07g42940.2, LOC_Os07g42940.3, LOC_Os07g42940.9, LOC_Os07g42940.8, LOC_Os07g42940.7, LOC_Os07g42940.6, LOC_Os07g42940.5				GO:0010162 - seed dormancy, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0016036 - cellular response to phosphate starvation, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0005856 - cytoskeleton, GO:0009845 - seed germination	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000253 - seed dormancy, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0007057 - 0 seed germination stage , PO:0009047 - stem 
9811	SAPK3	OsSAPK3, REK, OsSnRK2.3, SnRK2.3	STRESS/ABA-ACTIVATED PROTEIN KINASE 3	stress/ABA-activated protein kinase 3, rice endosperm protein kinase, Stress-Activated Protein Kinase 3, Sucrose nonfermenting-1-related protein kinase 2.3	STRESS/ABA-ACTIVATED PROTEIN KINASE 3	sapk3, sapk3-1, sapk3-2	10	SnRK2 protein kinase. AB125304. P0C5D6. AB002109, D88399. A2ZAB5. JF733761.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os10g0564500	LOC_Os10g41490.1, LOC_Os10g41490.2, LOC_Os10g41490.3				GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0004674 - protein serine/threonine kinase activity, GO:0030104 - water homeostasis, GO:0005524 - ATP binding, GO:0006979 - response to oxidative stress, GO:0010119 - regulation of stomatal movement, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus	TO:0000396 - grain yield, TO:0000276 - drought tolerance, TO:0000131 - leaf water potential, TO:0002657 - oxidative stress, TO:0000449 - grain yield per plant, TO:0000340 - total soluble sugar content, TO:0006002 - proline content, TO:0000522 - stomatal conductance, TO:0000346 - tiller number, TO:0000734 - grain length, TO:0000397 - grain size, TO:0000507 - osmotic adjustment capacity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000095 - osmotic response sensitivity	PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem 
9812	SAPK4	OsSAPK4, OsSnRK2.4, SnRK2.4	STRESS/ABA-ACTIVATED PROTEIN KINASE 4	stress/ABA-activated protein kinase 4, Stress-Activated Protein Kinase 4, Sucrose nonfermenting-1-related protein kinase 2.4	STRESS/ABA-ACTIVATED PROTEIN KINASE 4		1	SnRK2 protein kinase. AB125305. Q5N942. JF733762.	 Tolerance and resistance - Stress tolerance	Os01g0869900	LOC_Os01g64970.1				GO:0006950 - response to stress, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0005856 - cytoskeleton, GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009047 - stem 
9813	SAPK5	OsSAPK5, OsSnRK2.5, SnRK2.5	STRESS/ABA-ACTIVATED PROTEIN KINASE 5	stress/ABA-activated protein kinase 5, Stress-Activated Protein Kinase 5, Sucrose nonfermenting-1-related protein kinase 2.5	STRESS/ABA-ACTIVATED PROTEIN KINASE 5		4	SnRK2 protein kinase. AB125306. Q7XKA8. C22640. JF733763.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0691100	LOC_Os04g59450.3, LOC_Os04g59450.1, LOC_Os04g59450.2				GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0004674 - protein serine/threonine kinase activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0005856 - cytoskeleton, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	PO:0025034 - leaf 
9814	SAPK6	OsSAPK6, OSRK1, OsSnRK2.6, SnRK2.6	STRESS/ABA-ACTIVATED PROTEIN KINASE 6	stress/ABA-activated protein kinase 6, Stress-Activated Protein Kinase 6, Sucrose nonfermenting-1-related protein kinase 2.6, OSMOTIC STRESS/ABA-ACTIVATED PROTEIN KINASE 6	STRESS/ABA-ACTIVATED PROTEIN KINASE 6	ossapk6, ossapk6-1, ossapk6-2, ossapk6-3	2	SnRK2 protein kinase. AB125307. DQ285022. Q6ZI44. AU056506. JF733764.	 Tolerance and resistance - Stress tolerance	Os02g0551100	LOC_Os02g34600.2, LOC_Os02g34600.1				GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0004674 - protein serine/threonine kinase activity, GO:0005856 - cytoskeleton, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
9815	SAPK7	OsSAPK7, OsSnRK2.7, SnRK2.7	STRESS/ABA-ACTIVATED PROTEIN KINASE 7	stress/ABA-activated protein kinase 7, Stress-Activated Protein Kinase 7, Sucrose nonfermenting-1-related protein kinase 2.7	STRESS/ABA-ACTIVATED PROTEIN KINASE 7		4	SnRK2 protein kinase. AB125308. Q7XQP4. AU075635. JF733765. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0432000	LOC_Os04g35240.1				GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0005856 - cytoskeleton, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009049 - inflorescence 
9816	SAPK8	OsSAPK8, OsSnRK2.8, SnRK2.8	STRESS/ABA-ACTIVATED PROTEIN KINASE 8	stress/ABA-activated protein kinase 8, Stress-Activated Protein Kinase 8, Sucrose nonfermenting-1-related protein kinase 2.8	STRESS/ABA-ACTIVATED PROTEIN KINASE 8		3	SnRK2 protein kinase. AB125309. Q7Y0B9. JF733766. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait. 	 Tolerance and resistance - Stress tolerance	Os03g0764800	LOC_Os03g55600.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010118 - stomatal movement, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005856 - cytoskeleton, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0025034 - leaf 
9817	SAPK9	OsSAPK9, OsSnRK2.9, SnRK2.9	STRESS/ABA-ACTIVATED PROTEIN KINASE 9	stress/ABA-activated protein kinase 9, Stress-Activated Protein Kinase 9, Sucrose nonfermenting-1-related protein kinase 2.9	STRESS/ABA-ACTIVATED PROTEIN KINASE 9	sapk9	12	SnRK2 protein kinase. AB125310. Q75V57. JF733767. GO:1901002: positive regulation of response to salt stress. GO:1900426: positive regulation of defense response to bacterium. GO:2001250: positive regulation of ammonia assimilation cycle. GO:0098869: cellular oxidant detoxification. GO:2000280: regulation of root development. PO:0030123: panicle inflorescence.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0586100	LOC_Os12g39630.1				GO:0009737 - response to abscisic acid stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0005737 - cytoplasm, GO:0009738 - abscisic acid mediated signaling, GO:0060359 - response to ammonium ion, GO:0005856 - cytoskeleton, GO:0009415 - response to water, GO:0019676 - ammonia assimilation cycle, GO:0048364 - root development, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000237 - water stress trait, TO:0000605 - hydrogen peroxide content, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009047 - stem , PO:0007520 - root development stage , PO:0009049 - inflorescence 
9818	SAPK10	OsSAPK10, OsSnRK2.10, SnRK2.10	STRESS/ABA-ACTIVATED PROTEIN KINASE 10	stress/ABA-activated protein kinase 10, Stress-Activated Protein Kinase 10, Osmotic stress/abscisic acid-activated protein kinase 10, Sucrose nonfermenting-1-related protein kinase 2.10	STRESS/ABA-ACTIVATED PROTEIN KINASE 10	ossapk10	3	SnRK2 protein kinase. AB125311. Q75H77. JF733768. candidate gene for qSSR3. TO 0020095: stomatal process related trait. GO:0090332: stomatal closure. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Vegetative organ - Leaf	Os03g0610900	LOC_Os03g41460.1				GO:0005856 - cytoskeleton, GO:0009651 - response to salt stress, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0030104 - water homeostasis, GO:0005524 - ATP binding, GO:0009738 - abscisic acid mediated signaling, GO:0010116 - positive regulation of abscisic acid biosynthetic process	TO:0000255 - sheath blight disease resistance, TO:0000131 - leaf water potential, TO:0002667 - abscisic acid content, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0002665 - root hair length, TO:0000136 - relative water content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0000293 - guard cell , PO:0025034 - leaf 
9819	TRAB1	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5	TRANSCRIPTION FACTOR RESPONSIBLE FOR ABA REGULATION 1	basic region leucine zipper factor TRAB1, basic domain/Leu zipper factor TRAB1, transcription factor responsible for ABA regulation 1, bZIP transcription factor 66	TRANSCRIPTION FACTOR RESPONSIBLE FOR ABA REGULATION 1		8	ABRE-binding factor. AB023288. Q6ZDF3.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Other	Os08g0472000	LOC_Os08g36790.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0046983 - protein dimerization activity, GO:0010029 - regulation of seed germination, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0003700 - transcription factor activity, GO:0009738 - abscisic acid mediated signaling, GO:0043565 - sequence-specific DNA binding	TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage 
9820	NH2	OsNH2, OsNPR2, NPR2, OsNPR2/NH2, DLN21, OsDLN21, PR2, OsNPR1, NPR1, OsBTBA2, BTBA2, OsNPR3, NPR3	NPR1 HOMOLOG 2	NPR1-like 2, NPR1 homologue 2, nonexpresser of PR genes 2, Arabidopsis NPR1 homolog 2, non-expressor of pathogenesis-related gene2, DLN repressor 21, DLN motif protein 21, BTB-type E3 ubiquitin ligase A2	NPR1 HOMOLOG 2		1	a rice ortholog of Arabidopsis thaliana NPR1. AY923984. DQ450950. OsNPR1 in Sahu et al. 2021, Sahu et al. 2022, Patel et al. 2022. OsNPR3 in Wang et al. 2023.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os01g0767900	LOC_Os01g56200.2, LOC_Os01g56200.1				GO:0005634 - nucleus, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009617 - response to bacterium, GO:0042742 - defense response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0002215 - defense response to nematode	TO:0000175 - bacterial blight disease resistance, TO:0000384 - nematode damage resistance	
9821	RH1	OsRH1	NRR REPRESSOR HOMOLOGUE 1	NRR Repressor Homologue 1	NRR REPRESSOR HOMOLOGUE 1		5	Q6L589.	 Tolerance and resistance	Os05g0368000	LOC_Os05g30500.1				GO:0005634 - nucleus, GO:0006952 - defense response, GO:0010112 - regulation of systemic acquired resistance		
9822	RH2	OsRH2	NRR REPRESSOR HOMOLOGUE 2	NRR Repressor Homologue 2	NRR REPRESSOR HOMOLOGUE 2		1	Q5QM06.	 Tolerance and resistance	Os01g0508500	LOC_Os01g32460.1				GO:0006952 - defense response, GO:0005634 - nucleus, GO:0010112 - regulation of systemic acquired resistance		
9823	RH3	OsRH3	NRR REPRESSOR HOMOLOGUE 3	NRR Repressor Homologue 3	NRR REPRESSOR HOMOLOGUE 3		1	B7F924.	 Tolerance and resistance - Disease resistance	Os01g0508100	LOC_Os01g32380.1				GO:0006952 - defense response, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0010112 - regulation of systemic acquired resistance	TO:0000255 - sheath blight disease resistance	
9824	NRR	OsNRR, OsNRR1, NRR1	NEGATIVE REGULATOR OF RESISTANCE	negative regulator of resistance	NEGATIVE REGULATOR OF RESISTANCE		1	AY846391. Q5ZEF1. NPR1 interactor.	 Tolerance and resistance - Disease resistance	Os01g0130200	LOC_Os01g03940.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0006334 - nucleosome assembly, GO:0010112 - regulation of systemic acquired resistance, GO:0000786 - nucleosome	TO:0000112 - disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000175 - bacterial blight disease resistance	
9825	TAD1	TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1, OsCCS52A1/TE/TAD1, CCS52A1/TE/TAD1, OsCDH1A, CDH1A	TILLERING AND DWARF 1	Tillering and Dwarf 1, cell cycle switch 52 A, cell cycle switch 52A, A-type cell cycle switch 52, tiller enhancer, HOMOLOGUE OF CDH1, CELL CYCLE SWITCH PROTEIN 52A 1, APC-type E3 ubiquitin ligase OsCCS52A1/TE/TAD1	CO-ACTIVATOR OF APC/C	tad1, osccs52a, osccs52a-1, osccs52a-2, te	3	co-activator of the anaphase-promoting complex (APC/C), target MOC1 for degradation. TE acts as an activator of the anaphase promoting complex/cyclosome (APC/C) complex. CCS52A1 in Dedecker et al. 2016.  GO:2000280: regulation of root development. GO:1905786: positive regulation of anaphase-promoting complex-dependent catabolic process.	 Seed - Physiological traits - Dormancy,  Character as QTL - Germination,  Vegetative organ - Root,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os03g0123300	LOC_Os03g03150.1, LOC_Os03g03150.2				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0042023 - DNA endoreduplication, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0009738 - abscisic acid mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0048507 - meristem development, GO:0010082 - regulation of root meristem growth, GO:0016049 - cell growth, GO:0010091 - trichome branching, GO:0032877 - positive regulation of DNA endoreduplication, GO:0051445 - regulation of meiotic cell cycle, GO:0010030 - positive regulation of seed germination, GO:0048364 - root development	TO:0002692 - root meristem development, TO:0000346 - tiller number, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000152 - panicle number, TO:0000730 - mitotic cell cycle trait, TO:0000329 - tillering ability	PO:0007057 - 0 seed germination stage , PO:0009005 - root , PO:0005029 - root primordium , PO:0006085 - root meristem , PO:0020021 - integument , PO:0000002 - anther wall , PO:0007520 - root development stage , PO:0020003 - plant ovule 
9826	_	OsAPC10	_					docking protein of anaphase-promoting complex/cyclosome (APC/C)	 Vegetative organ - Culm								
9827	PHP1	OsPHP1, Hpt1, OsHP3, sHP3, OsHpt1	PSEUDO-PHOSPHOTRANSFER PROTEIN 1	pseudo-phosphotransfer protein 1			1	Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.		Os01g0743800 	LOC_Os01g54050.1				GO:0000160 - two-component signal transduction system (phosphorelay), GO:0004871 - signal transducer activity, GO:0009736 - cytokinin mediated signaling		
9828	PHP2	OsPHP2, Hpt4, OsHP5, HP5, OsHpt4, OsHP05	PSEUDO-PHOSPHOTRANSFER PROTEIN 2	pseudo-phosphotransfer protein 2			5	Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.		Os05g0186100 	LOC_Os05g09410.1				GO:0009736 - cytokinin mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0000160 - two-component signal transduction system (phosphorelay)	TO:0000167 - cytokinin sensitivity	
9829	PHP3	OsPHP3, Hpt5, OsHP4, HP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c	PSEUDO-PHOSPHOTRANSFER PROTEIN 3	pseudo-phosphotransfer protein 3			5	Histidine phosphotransfer protein, His-containing phosphotransfer protein. Hpt protein.		Os05g0521300	LOC_Os05g44570.3, LOC_Os05g44570.2, LOC_Os05g44570.1, LOC_Os05g44560.1				GO:0007018 - microtubule-based movement, GO:0005524 - ATP binding, GO:0005874 - microtubule, GO:0003777 - microtubule motor activity		
9830	RR27	OsRR27, Rra16, OsPRR5, OsRRA16	B-TYPE RESPONSE REGULATOR 27	A-type RR 16, response regulator 27			5	B-type RR.		Os05g0395600	LOC_Os05g32880.1						
9831	RR28	OsRR28, Rra22, OsPRR3, OsRRA22	B-TYPE RESPONSE REGULATOR 28	A-type RR 22, response regulator 28.			4	B-type RR. response regulator receiver domain containing protein.		Os04g0349100 	LOC_Os04g28160.1						
9832	RR29	OsRR29, Rrb7, OsPRR4, OsRRB7	B-TYPE RESPONSE REGULATOR 29	B-type RR 7, response regulator 29			4			Os04g0348800 	LOC_Os04g28130.1				GO:0000156 - two-component response regulator activity, GO:0006355 - regulation of transcription, DNA-dependent		
9833	RR31	OsRR31	B-TYPE RESPONSE REGULATOR 31	response regulator 31			8	B-type RR.		Os08g0458400 	LOC_Os08g35650.1						
9834	_	OsRR32	_	response regulator 32			8	B-type RR.		Os08g0279900 	LOC_Os08g17760.1						
9835	RR33	OsRR33, Rra19, OsRRA19	B-TYPE RESPONSE REGULATOR 33	response regulator 33, A-type response regulator 19, A-type RR 19			8	B-type RR.		Os08g0458600 	LOC_Os08g35670.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0000156 - two-component response regulator activity		
9836	_	OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54	_	response regulator 41, A-type response regulator 14, response regulator 14, A-type RR 14, endosperm-specific gene 54			3	LOC_Os03g53100. type-C response regulator. 		Os03g0742300 	LOC_Os03g53100.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0000156 - two-component response regulator activity		
9837	_	OsRR42, Rra15, OsRR13, OsRRA15	_	response regulator 42, A-type response regulator 15, response regulator 13, A-type RR 15			4	type-C response regulator.		Os04g0212450 	LOC_Os04g13480.1						
9838	_	OsPRR10, Rra18, OsRRA18	_	pseudo-response regulator 10, A-type response regulator 18, A-type RR 18			5			Os05g0395700 	LOC_Os05g32890.1						
9839	_	OsPRR11	_	pseudo-response regulator 11			4			Os04g0349000 	LOC_Os04g28150.1						
9840	_	OsPRR12, Rra17, OsRRA17, OsEnS-61	_	pseudo-response regulator 12, A-type response regulator 17, A-type RR 17, endosperm-specific gene 61			4	LOC_Os04g28120.		Os04g0348600 	LOC_Os04g28120.1						
9841	HK1	OsHK1, OHK1, MHZ1/OsHK1, MHZ1, OsMHZ1	HISTIDINE KINASE 1	histidine kinase 1, mao huzi 1, histidine kinase-1		mhz1, mhz1-1, mhz1-2, mhz1-3, mhz1-4, mhz1-5, Oshk1, Oshk1-4, Oshk1-5, Oshk1-6, Oshk1-7, Oshk1-8, hk1, oshk1-1, oshk1-2, oshk1-3	6	His-kinase domain(HK), Receiver domain(Rec). mao huzi (mhz, Chinese name with an English meaning of cat whiskers) in Zhao et al. 2020. GO:0060918: auxin transport.	 Biochemical character,  Vegetative organ - Root	Os06g0654300	LOC_Os06g44410.1				GO:0009733 - response to auxin stimulus, GO:0009736 - cytokinin mediated signaling, GO:0048364 - root development, GO:0010031 - circumnutation, GO:0080022 - primary root development, GO:0009723 - response to ethylene stimulus, GO:0018106 - peptidyl-histidine phosphorylation, GO:0016020 - membrane, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009727 - detection of ethylene stimulus, GO:0005524 - ATP binding, GO:0000156 - two-component response regulator activity, GO:0000155 - two-component sensor activity	TO:0000656 - root development trait, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000227 - root length	PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage 
9842	IPT9	OsIPT9, OsIPT5, IPT5	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 9	adenosine phosphate isopentenyltransferase 9, isopentenyltransferase 9, IPP transferase 9	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 9		1	AB239806. OsIPT5 in Thenappan et al. 2024.	 Biochemical character	Os01g0968700 	LOC_Os01g73760.1				GO:0009609 - response to symbiotic bacterium, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0007131 - reciprocal meiotic recombination, GO:0008033 - tRNA processing, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0052381 - tRNA dimethylallyltransferase activity, GO:0009691 - cytokinin biosynthetic process		
9843	IPT10	OsIPT10	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 10	adenosine phosphate isopentenyltransferase 10, isopentenyltransferase 10	ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 10		6	LOC_Os06g51350. AB239807.	 Biochemical character	Os06g0729800 	LOC_Os06g51350.1				GO:0005524 - ATP binding, GO:0008033 - tRNA processing, GO:0016740 - transferase activity, GO:0009691 - cytokinin biosynthetic process		
9844	_	CYP735A3	_	cytochrome 450 735A3			8	LOC_Os08g33300. cytokinin (CK) transhydroxylase.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0429800 	LOC_Os08g33300.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
9845	CYP735A4	OsCYP735A4	CYTOCHROME 450 735A4	cytochrome 450 735A4	CYTOCHROME 450 735A4		9	cytokinin (CK) transhydroxylase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0403300	LOC_Os09g23820.1				GO:0005506 - iron ion binding, GO:0009690 - cytokinin metabolic process, GO:0004497 - monooxygenase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
9846	LOGL1	OsLOGL1	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 1	LOG LIKE phosphoribohydrolase 1, LOG LIKE 1, OsLOG- like	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 1		1	Q8LR50.	 Biochemical character	Os01g0708500	LOC_Os01g51210.1, LOC_Os01g51210.2				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9847	LOGL2	LOGL2	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 2	LOG LIKE phosphoribohydrolase 2, LOG LIKE 2	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 2		2	B9F166.	 Biochemical character	Os02g0628000	LOC_Os02g41770.1				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9848	LOGL3	OsLOGL3	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 3	LOG LIKE phosphoribohydrolase 3, LOG LIKE 3	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 3		3	Q8H7U8. target of Osa-miR444.	 Biochemical character	Os03g0109300	LOC_Os03g01880.2, LOC_Os03g01880.1				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9849	LOGL4	LOGL4	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 4	LOG LIKE phosphoribohydrolase 4, LOG LIKE 4	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 4		3	Q851C7.	 Biochemical character	Os03g0697200	LOC_Os03g49050.1				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9850	LOGL5	OsLOGL5	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 5	LOG LIKE phosphoribohydrolase 5, LOG LIKE 5, LOG-LIKE 5	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 5		3	Q84M85.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Character as QTL - Yield and productivity	Os03g0857900	LOC_Os03g64070.1				GO:0042594 - response to starvation, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009725 - response to hormone stimulus, GO:0009414 - response to water deprivation, GO:0006995 - cellular response to nitrogen starvation, GO:0080037 - negative regulation of cytokinin mediated signaling, GO:0009691 - cytokinin biosynthetic process, GO:0019740 - nitrogen utilization	TO:0000227 - root length, TO:0000011 - nitrogen sensitivity, TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0000396 - grain yield	
9851	LABA1	LOGL6, OsLOGL6, An-2	LONG AND BARBED AWN 1	LOG LIKE phosphoribohydrolase 6, LOG LIKE 6, LOG-like 6, Lonely Guy Like protein 6, long and barbed awn 1, Awn-2	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 6	laba1, an-2	4	Q0JBP5. a cytokinin-activating enzyme. a cytokinin riboside 5'-monophosphate phosphoribohydrolase. a homolog of rice LONELY GUY (LOG). KR703211, KR703212 (O. rufipogon).	 Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Biochemical character	Os04g0518800	LOC_Os04g43840.1				GO:0009821 - alkaloid biosynthetic process, GO:0080038 - positive regulation of cytokinin mediated signaling, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process, GO:0005634 - nucleus, GO:0005829 - cytosol	TO:0000346 - tiller number, TO:0002759 - grain number, TO:0002718 - awn anatomy and morphology trait, TO:0000072 - awn length, TO:0002660 - cytokinin content, TO:0000396 - grain yield	
9852	LOGL7	LOGL7	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 7	LOG LIKE phosphoribohydrolase 7, LOG LIKE 7	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 7		5	Q5TKP8.	 Biochemical character	Os05g0541200	LOC_Os05g46360.1, LOC_Os05g46360.2, LOC_Os05g46360.3				GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds, GO:0009691 - cytokinin biosynthetic process		
9853	LOGL8	LOGL8	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 8	LOG LIKE phosphoribohydrolase 8, LOG LIKE 8	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 8		5	Q0DFG8.	 Biochemical character	Os05g0591600	LOC_Os05g51390.1, LOC_Os05g51390.2				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9854	LOGL9	LOGL9	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 9	LOG LIKE phosphoribohydrolase 9, LOG LIKE 9, OsLDC-like 1, lysine decarboxylase-like 1	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 9	osldc-like 1	9	B7E7M8.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0547500	LOC_Os09g37540.1				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9855	LOGL10	LOGL10	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 10	LOG LIKE phosphoribohydrolase 10, LOG LIKE 10	LONELY GUY LIKE PHOSPHORIBOHYDROLASE 10		10	Q7XDB8.	 Biochemical character	Os10g0479500	LOC_Os10g33900.1				GO:0009691 - cytokinin biosynthetic process, GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds		
9856	ETR3	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2, OsETR2;1, ETR2;1	ETHYLENE RESPONSE 3				2	ethylene receptor. AY434735. AF420318. OsETR2;1 in Li et al. 2022. the candidate gene for qPP2 (protrusion percentage-associated QTL on chromosome 2).	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os02g0820900	LOC_Os02g57530.1, LOC_Os02g57530.4, LOC_Os02g57530.3, LOC_Os02g57530.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0018106 - peptidyl-histidine phosphorylation, GO:0009408 - response to heat, GO:0000156 - two-component response regulator activity, GO:0000155 - two-component sensor activity, GO:0009723 - response to ethylene stimulus, GO:0005524 - ATP binding, GO:0048573 - photoperiodism, flowering, GO:0016020 - membrane	TO:0000280 - seedling vigor, TO:0002616 - flowering time, TO:0000019 - seedling height, TO:0000259 - heat tolerance, TO:0000173 - ethylene sensitivity, TO:0000430 - germination rate, TO:0000137 - days to heading	
9857	ERS1	OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS	ETHYLENE RECEPTOR 	ethylene responsive factor, ethylene response sensor 1		ers1, osers1	3	ethylene receptor. AY043031, AF013979.	 Tolerance and resistance - Disease resistance	Os03g0701700	LOC_Os03g49500.2, LOC_Os03g49500.1				GO:0050832 - defense response to fungus, GO:0018106 - peptidyl-histidine phosphorylation, GO:0000155 - two-component sensor activity, GO:0005524 - ATP binding, GO:0010105 - negative regulation of ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity, TO:0000255 - sheath blight disease resistance	
9858	ERS2	OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c	ETHYLENE RESPONSE SENSOR 2	ETHYLENE RECEPTOR, ETHYLENE RESPONSE SENSOR2		Osers2, Osers2d	5	ethylene receptor. AF460181.	 Vegetative organ - Root	Os05g0155200	LOC_Os05g06320.2, LOC_Os05g06320.3				GO:0009873 - ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0000155 - two-component sensor activity, GO:0018106 - peptidyl-histidine phosphorylation, GO:0005524 - ATP binding	TO:0000516 - relative root length, TO:0000227 - root length, TO:0000173 - ethylene sensitivity	
9859	_	OsMYB2P-1	_	MYB2 phosphate-responsive gene 1				An R2R3 MYB transcription factor. TO:0020102: phosphate content.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance								
9860	PI1	OsIPS2, IPS2, OsPI1	PHOSPHATE-LIMITATION INDUCIBLE GENE 1	Oryza sativa Phosphate-limitation Inducible Gene 1, induced by phosphate starvation 2, phosphate starvation 2			1	BI796836. C19881. AU162218. TPSI1/Mt4 family gene. A phosphorus starvation induced gene OsIPS2. TO:0020102: phosphate content. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance	Os01g0838350					GO:0042594 - response to starvation, GO:0010167 - response to nitrate	TO:0000102 - phosphorus sensitivity	
9861	MIR399A	OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a	MICRORNA399A	microRNA399a, osa-miRNA399a	_		1	miRBASE accession: MI0001053. predicted target(s): Pho2. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) HM139902-HM139922. LM379297.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0051365 - cellular response to potassium ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0055062 - phosphate ion homeostasis, GO:0006379 - mRNA cleavage	TO:0000102 - phosphorus sensitivity	
9862	_	OsSQD	_	UDP-sulfoquinovose synthase					 Biochemical character								
9863	SPX1	OsSPX1	SPX DOMAIN PROTEIN 1	SPX (SYG/PHO81/XPR1) domain gene 1, SPX domain protein 1	SPX DOMAIN PROTEIN 1	spx1	6	Q69XJ0. PDB: 7E40 (SPX1-PHR2 Complex Structure). TO:0020102: phosphate content. Pi signaling pathway, TO:0020098: nitrate sensitivity. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Character as QTL - Plant growth activity	Os06g0603600	LOC_Os06g40120.1				GO:0031347 - regulation of defense response, GO:0055062 - phosphate ion homeostasis, GO:0009741 - response to brassinosteroid stimulus, GO:0010167 - response to nitrate, GO:0048016 - inositol phosphate-mediated signaling, GO:0070482 - response to oxygen levels, GO:0005634 - nucleus, GO:0070417 - cellular response to cold, GO:0042594 - response to starvation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009742 - brassinosteroid mediated signaling, GO:0010247 - detection of phosphate ion, GO:0040008 - regulation of growth, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0009716 - flavonoid phytoalexin biosynthetic process, GO:0016036 - cellular response to phosphate starvation, GO:0080040 - positive regulation of cellular response to phosphate starvation	TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance, TO:0000206 - leaf angle, TO:0000357 - growth and development trait, TO:0002657 - oxidative stress, TO:0000112 - disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0002688 - leaf lamina joint bending	
9864	MIR399D	OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d	MICRORNA399D	microRNA399d, osa-miRNA399d	_		6	miRBASE accession: MI0001056. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) HM139923-HM139967 (O. sativa, O. rufipogon, O. barthii). GO:0072732: cellular response to calcium ion starvation.LM379300	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0051365 - cellular response to potassium ion starvation, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016036 - cellular response to phosphate starvation, GO:0010106 - cellular response to iron ion starvation		
9866	CYP71Z6	Oscyp71Z6, OsCYP71Z5, CYP71Z5	P-450 71Z6	Cytochrome P450 71Z6	CYTOCHROME P450 71Z6		2	A3A871. BGIOSGA008468. a phytocassane biosynthetic gene. OsCYP71Z5 in Sahoo et al. 2023. GO:0036201: ent-isokaurene C2-hydroxylase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0570500	LOC_Os02g36150.1				GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0016102 - diterpenoid biosynthetic process, GO:0005506 - iron ion binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
9867	CYP71Z7	Oscyp71Z7, OsCYP71Z6, CYP71Z6	P-450 71Z7	Cytochrome P450 71Z7	CYTOCHROME P450 71Z7		2	a phytocassane biosynthetic gene. Q6YV88. BGIOSGA006215. OsCYP71Z6 in Sahoo et al. 2023. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0570700	LOC_Os02g36190.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016102 - diterpenoid biosynthetic process, GO:0020037 - heme binding, GO:0002238 - response to molecule of fungal origin, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0055114 - oxidation reduction, GO:0009411 - response to UV, GO:0016020 - membrane, GO:0005506 - iron ion binding	TO:0000160 - UV light sensitivity	
9868	CYP76M5	OsCYP76M5, OsCYP76-2, CYP76-2, OsCYP71T4, CYP71T4	P-450 76M5	Cytochrome P450 76M5	CYTOCHROME P450 76M5		2	a phytocassane biosynthetic gene. BGIOSGA008463 (indica). OsCYP76-2 in Zhou et al. 2023. OsCYP71T4 in Sahoo et al. 2023.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os02g0569000	LOC_Os02g36030.1				GO:0009414 - response to water deprivation, GO:0002215 - defense response to nematode, GO:0020037 - heme binding, GO:0009409 - response to cold, GO:0005506 - iron ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009413 - response to flooding, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000384 - nematode damage resistance, TO:0000114 - flooding related trait	PO:0009005 - root 
9869	CYP76M6	OsCYP76M6, OsCYP76-5, CYP76-5, OsCYP71T5, CYP71T5	P-450 76M6	Cytochrome P450 76M6, Oryzalexin E synthase	CYTOCHROME P450 76M6		2	a phytocassane biosynthetic gene. Oryzalexin E synthase. BGIOSGA006210 (indica). OsCYP76-5 in Zhou et al. 2023. OsCYP71T5 in Sahoo et al. 2023.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0571900	LOC_Os02g36280.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0002215 - defense response to nematode, GO:0009753 - response to jasmonic acid stimulus, GO:0002238 - response to molecule of fungal origin, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009409 - response to cold	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000384 - nematode damage resistance, TO:0000114 - flooding related trait, TO:0006001 - salt tolerance	PO:0009005 - root 
9870	CYP76M7	OsCYP76M7, CYP76M10, OsCYP76M10, OsCYP76-4, CYP76-4	P-450 76M7	Cytochrome P450 76M7	CYTOCHROME P450 76M7	cyp76m7	2	a phytocassane biosynthetic gene. an ent-Cassadiene C11alpha-Hydroxylase. metabolite: Phytocassane D. CYP76M10 in Brazier-Hicks et al. 2017. OsCYP76-4 in Zhou et al. 2023.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm	Os02g0569900	LOC_Os02g36110.1				GO:0009628 - response to abiotic stimulus, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0020037 - heme binding, GO:0009414 - response to water deprivation, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0002238 - response to molecule of fungal origin, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response	TO:0000524 - submergence tolerance, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0002669 - diterpenoid phytoalexin content, TO:0000207 - plant height, TO:0000114 - flooding related trait, TO:0002675 - gibberellic acid content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0025034 - leaf 
9871	CYP76M8	OsCYP76M8, OsCYP76-3, CYP76-3	P-450 76M8	Cytochrome P450 76M8, Oryzalexin D synthase	CYTOCHROME P450 76M8	cyp76m8	2	a phytocassane biosynthetic gene. Q6YTF1.BGIOSGA008465 (indica). an mRNA target of MSTRG.7147.1. OsCYP76-3 in Zhou et al. 2023. GO:0036202: ent-cassa-12,15-diene 11-hydroxylase activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0569400	LOC_Os02g36070.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0020037 - heme binding, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0009628 - response to abiotic stimulus, GO:0002215 - defense response to nematode, GO:0002238 - response to molecule of fungal origin, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016102 - diterpenoid biosynthetic process, GO:0009055 - electron carrier activity, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding	TO:0000112 - disease resistance, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0002669 - diterpenoid phytoalexin content, TO:0006001 - salt tolerance, TO:0000384 - nematode damage resistance, TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	
9873	_	OsMASL	_				4	a momilactone biosynthetic gene.	 Biochemical character								
9874	TPKC	TPKc, OsTPKc	TWO-PORE K+ CHANNEL C	two-pore K+ channel c	TWO-PORE K+ CHANNEL C				 Biochemical character								
9875	BC14	OsBC14, OsNST1, NST1	BRITTLE CULM 14	brittle culm 14, Oryza sativa nucleotide sugar transport 1, nucleotide sugar transport 1, Nucleotide Sugar Transporter1		bc14, Osnst1	2		 Vegetative organ - Culm	Os02g0614100	LOC_Os02g40030.1, LOC_Os02g40030.2				GO:0016021 - integral to membrane		
9876	NDPK1	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1	NUCLEOSIDE DIPHOSPHATE KINASE 1	nucleoside diphosphate kinase 1, Nucleoside diphosphate kinase, 16.8 kDa NDK, NDP kinase	NUCLEOSIDE DIPHOSPHATE KINASE 1		7	Q07661. D16292, D10431.	 Biochemical character	Os07g0492000	LOC_Os07g30970.1, LOC_Os07g30970.2				GO:0006228 - UTP biosynthetic process, GO:0004550 - nucleoside diphosphate kinase activity, GO:0006241 - CTP biosynthetic process, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0006183 - GTP biosynthetic process		
9877	YSS2	OsNDPK2, NDPK2, BIP114	YOUNG SEEDLING STRIPE 2	nucleoside diphosphate kinase 2, brassinosteroid receptor kinase (BRI1)-interacting protein 114, BRI1-interacting protein 114, brassinosteroid receptor kinase-interacting protein 114	NUCLEOSIDE DIPHOSPHATE KINASE 2	yss2	12	LOC_Os12g36194. AB118001. TO:0006060: leaf chlorosis.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Biochemical character	Os12g0548300	LOC_Os12g36194.1				GO:0005524 - ATP binding, GO:0009658 - chloroplast organization, GO:0004550 - nucleoside diphosphate kinase activity, GO:0006183 - GTP biosynthetic process, GO:0006228 - UTP biosynthetic process, GO:0006241 - CTP biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0009414 - response to water deprivation	TO:0000188 - drought sensitivity, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000201 - panicle color, TO:0000293 - chlorophyll-a content, TO:0000346 - tiller number, TO:0000326 - leaf color, TO:0002677 - brassinosteroid sensitivity	
9878	NDPK3	OsNDPK3	NUCLEOSIDE DIPHOSPHATE KINASE 3	nucleoside diphosphate kinase 3	NUCLEOSIDE DIPHOSPHATE KINASE 3		5	LOC_Os05g51700.	 Biochemical character	Os05g0595400	LOC_Os05g51700.1, LOC_Os05g51700.2, LOC_Os05g51700.3				GO:0006241 - CTP biosynthetic process, GO:0004550 - nucleoside diphosphate kinase activity, GO:0005524 - ATP binding, GO:0006183 - GTP biosynthetic process, GO:0006228 - UTP biosynthetic process		
9879	_	OsAHL1, AHL1	_	AT-hook motif DNA-binding protein 1, AT-hook motif nuclear localized protein 1			2		 Tolerance and resistance - Stress tolerance	Os02g0125200	LOC_Os02g03270.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003680 - AT DNA binding, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
9880	AHL2	OsAHL2	AT-HOOK MOTIF DNA-BINDING PROTEIN 2	AT-hook motif DNA-binding protein 2, AT-hook motif nuclear localized protein 2	AT-HOOK MOTIF DNA-BINDING PROTEIN 2		2		 Tolerance and resistance - Stress tolerance	Os02g0448000	LOC_Os02g25020.1				GO:0003680 - AT DNA binding, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0005634 - nucleus	TO:0000276 - drought tolerance	
9881	AHL3	OsAHL3	AT-HOOK MOTIF DNA-BINDING PROTEIN 3	AT-hook motif DNA-binding protein 3, AT-hook motif nuclear localized protein 3	AT-HOOK MOTIF DNA-BINDING PROTEIN 3		2		 Tolerance and resistance - Stress tolerance	Os02g0713700	LOC_Os02g48320.3, LOC_Os02g48320.2, LOC_Os02g48320.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition, GO:0003700 - transcription factor activity, GO:0003680 - AT DNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
9883	AHL5	OsAHL5	AT-HOOK MOTIF DNA-BINDING PROTEIN 5	AT-hook motif DNA-binding protein 5, AT-hook motif nuclear localized protein 5	AT-HOOK MOTIF DNA-BINDING PROTEIN 5		2		 Tolerance and resistance - Stress tolerance	Os02g0824300	LOC_Os02g57820.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0003680 - AT DNA binding	TO:0000276 - drought tolerance	
9884	AHL6	OsAHL6	AT-HOOK MOTIF DNA-BINDING PROTEIN 6	AT-hook motif DNA-binding protein 6, AT-hook motif nuclear localized protein 6	AT-HOOK MOTIF DNA-BINDING PROTEIN 6		3			Os03g0105700	LOC_Os03g01540.1				GO:0003680 - AT DNA binding, GO:0005634 - nucleus		
9885	AHL7	OsAHL7	AT-HOOK MOTIF DNA-BINDING PROTEIN 7	AT-hook motif DNA-binding protein 7, AT-hook motif nuclear localized protein 7	AT-HOOK MOTIF DNA-BINDING PROTEIN 7		3		 Tolerance and resistance - Stress tolerance	Os03g0270000	LOC_Os03g16350.1				GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0003680 - AT DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
9887	AHL9	OsAHL9	AT-HOOK MOTIF DNA-BINDING PROTEIN 9	AT-hook motif DNA-binding protein 9, AT-hook motif nuclear localized protein 9	AT-HOOK MOTIF DNA-BINDING PROTEIN 9		4		 Tolerance and resistance - Stress tolerance	Os04g0590200	LOC_Os04g50030.1				GO:0003680 - AT DNA binding, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000276 - drought tolerance	
9888	AHL10	OsAHL10	AT-HOOK MOTIF DNA-BINDING PROTEIN 10	AT-hook motif DNA-binding protein 10, AT-hook motif nuclear localized protein 10	AT-HOOK MOTIF DNA-BINDING PROTEIN 10		4		 Tolerance and resistance - Stress tolerance	Os04g0683900	LOC_Os04g58730.1				GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003680 - AT DNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
9890	AHL12	OsAHL12	AT-HOOK MOTIF DNA-BINDING PROTEIN 12	AT-hook motif DNA-binding protein 12, AT-hook motif nuclear localized protein 12	AT-HOOK MOTIF DNA-BINDING PROTEIN 12		6		 Tolerance and resistance - Stress tolerance	Os06g0326000	LOC_Os06g22030.1				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0003680 - AT DNA binding	TO:0000276 - drought tolerance	
9891	AHL13	OsAHL13	AT-HOOK MOTIF DNA-BINDING PROTEIN 13	AT-hook motif DNA-binding protein 13, AT-hook motif nuclear localized protein 13	AT-HOOK MOTIF DNA-BINDING PROTEIN 13		7		 Tolerance and resistance - Stress tolerance	Os07g0235200	LOC_Os07g13100.1				GO:0003680 - AT DNA binding, GO:0009507 - chloroplast, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
9893	AHL15	OsAHL15, AHL	AT-HOOK MOTIF DNA-BINDING PROTEIN 15	AT-hook motif DNA-binding protein 15, AT-hook motif nuclear localized protein 15	AT-HOOK MOTIF DNA-BINDING PROTEIN 15		8		 Tolerance and resistance - Stress tolerance	Os08g0159700	LOC_Os08g06320.1				GO:0003680 - AT DNA binding, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000276 - drought tolerance	
9894	AHL16	OsAHL16	AT-HOOK MOTIF DNA-BINDING PROTEIN 16	AT-hook motif DNA-binding protein 16, AT-hook motif nuclear localized protein 16	AT-HOOK MOTIF DNA-BINDING PROTEIN 16		8		 Tolerance and resistance - Stress tolerance	Os08g0512400	LOC_Os08g40150.2, LOC_Os08g40150.1				GO:0003680 - AT DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
9895	AHL17	OsAHL17, AHL	AT-HOOK MOTIF DNA-BINDING PROTEIN 17	AT-hook motif DNA-binding protein 17, AT-hook motif nuclear localized protein 17	AT-HOOK MOTIF DNA-BINDING PROTEIN 17		8		 Tolerance and resistance - Stress tolerance	Os08g0563200	LOC_Os08g44910.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003680 - AT DNA binding, GO:0003700 - transcription factor activity, GO:0009507 - chloroplast	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
9896	AHL18	OsAHL18	AT-HOOK MOTIF DNA-BINDING PROTEIN 18	AT-hook motif DNA-binding protein 18, AT-hook motif nuclear localized protein 18	AT-HOOK MOTIF DNA-BINDING PROTEIN 18		10		 Tolerance and resistance - Stress tolerance	Os10g0572900	LOC_Os10g42230.3, LOC_Os10g42230.2, LOC_Os10g42230.1				GO:0005634 - nucleus, GO:0003680 - AT DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
9897	AHL19	OsAHL19	AT-HOOK MOTIF DNA-BINDING PROTEIN 19	AT-hook motif DNA-binding protein 19, AT-hook motif nuclear localized protein 19	AT-HOOK MOTIF DNA-BINDING PROTEIN 19		11		 Tolerance and resistance - Stress tolerance	Os11g0149100	LOC_Os11g05160.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0003680 - AT DNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
9898	AHL20	OsAHL20	AT-HOOK MOTIF DNA-BINDING PROTEIN 20	AT-hook motif DNA-binding protein 20, AT-hook motif nuclear localized protein 20	AT-HOOK MOTIF DNA-BINDING PROTEIN 20		12		 Tolerance and resistance - Stress tolerance	Os12g0147000	LOC_Os12g05200.1				GO:0003680 - AT DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
9899	OLE4	OsOLE4, Os-OLE4	OLEOSIN 4	oleosin 4	OLEOSIN 4		9			Os09g0324000	LOC_Os09g15520.1				GO:0012511 - monolayer-surrounded lipid storage body, GO:0016021 - integral to membrane		
9900	OLE1	OsOLE1, Os-OLE1	OLEOSIN 1	oleosin 1	OLEOSIN 1												
9901	OLE2	OsOLE2, Os-OLE2	OLEOSIN 2	oleosin 2	OLEOSIN 2												
9902	OLE3	OsOLE3, Os-OLE3	OLEOSIN 3	oleosin 3	OLEOSIN 3												
9903	OLE5	OsOLE5, Os-OLE5	OLEOSIN 5	oleosin 5	OLEOSIN 5												
9904	OLE6	OsOLE6, Os-OLE6	OLEOSIN 6	oleosin 6	OLEOSIN 6												
9905	TRXH2	OsTRXh2, Os2, OsTrxh2	THIOREDOXIN H-TYPE 2	Thioredoxin H-type 2, H-type Thioredoxin 2, thioredoxin h2	THIOREDOXIN H-TYPE 2	OsTrxh2#1, OsTrxh2#5, OsTrxh2#7	5		 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0508500	LOC_Os05g43252.1, LOC_Os05g43252.2				GO:0042742 - defense response to bacterium, GO:0045454 - cell redox homeostasis, GO:0009627 - systemic acquired resistance, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0050778 - positive regulation of immune response, GO:0006662 - glycerol ether metabolic process	TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf 
9906	TRX26	OsTRXh3, TRXH3, OsTrx26, Trx26, antiSTR1, OsTDX, TDX	THIOREDOXIN 26	Thioredoxin H-type 3, H-type Thioredoxin 3, Thioredoxin 26, Tetratricopeptide Domain-containing thioredoxin	THIOREDOXIN 26		9	Q6ES52. a natural antisense transcript (cis-NAT) of STR1. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os09g0401200	LOC_Os09g23650.1				GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0009651 - response to salt stress, GO:0005488 - binding, GO:0006810 - transport, GO:0009408 - response to heat	TO:0000439 - fungal disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
9907	TRXH4	OsTRXh4, OsTrx10, Trx10, Os3, OsTrxh3	THIOREDOXIN H-TYPE 4	Thioredoxin H-type 4, H-type Thioredoxin 4, Thioredoxin 10, thioredoxin h3	THIOREDOXIN H-TYPE 4		3	Q851R5. Os3(thioredoxin h3) in Gelhaye et al. 2005.	 Biochemical character	Os03g0800700	LOC_Os03g58630.1				GO:0006810 - transport, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process		
9908	TRXH5	OsTRXh5, OsTrx24, Trx24, Os4, OsTrxh4	THIOREDOXIN H-TYPE 5	Thioredoxin H-type 5, H-type Thioredoxin 5, Thioredoxin 24, thioredoxin h4	THIOREDOXIN H-TYPE 5		7	Q6Z4I3. CB681257. Os4(thioredoxin h4) in Gelhaye et al. 2005.	 Biochemical character	Os07g0190800	LOC_Os07g09310.1, LOC_Os07g09310.2				GO:0045454 - cell redox homeostasis, GO:0006810 - transport, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0022900 - electron transport chain		
9910	TRX1	OsTRXh7, TRXh7, OsTrx1, Trx1, OsTrx01, Trx01	THIOREDOXIN 1	Thioredoxin H-type 7, H-type Thioredoxin 7, Thioredoxin 1	THIOREDOXIN 1		1	Q9AS75. OsTrx1 in Esfahani and Shahpiri 2014, Shahriari-Farfani et al. 2018, Zafar et al. 2020. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0168200	LOC_Os01g07376.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain, GO:0006662 - glycerol ether metabolic process, GO:0006810 - transport		
9911	TRXH8	OsTRXh8, OsTrx18, Trx18, Os5, OsTrxh5	THIOREDOXIN H-TYPE 8	Thioredoxin H-type 8, H-type Thioredoxin 8, Thioredoxin 18, thioredoxin h5	THIOREDOXIN H-TYPE 8		5	Q0DKF1. AF435817. Os5(thioredoxin h5) in Gelhaye et al. 2005.	 Biochemical character	Os05g0169000	LOC_Os05g07690.1, LOC_Os05g07690.2, LOC_Os05g07690.3				GO:0006810 - transport, GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis		
9912	TRX20	OsTRXh9, TRXH9, OsTrx20, Trx20	THIOREDOXIN 20	Thioredoxin H-type 9, H-type Thioredoxin 9, Thioredoxin 20	THIOREDOXIN 20		5	Q75GM1. OsTrx20 in Esfahani and Shahpiri 2014, Shahriari-Farfani et al. 2018, Zafar et al. 2020. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0480200	LOC_Os05g40190.1				GO:0006810 - transport, GO:0015035 - protein disulfide oxidoreductase activity, GO:0006662 - glycerol ether metabolic process, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm		
9913	TRX3	OsTRXh10, TRXh10, OsTRX2, TRX2, TRXF, OsTRXF, OsTrx03, Trx03, OsTrx3, Trx3	THIOREDOXIN 3	Thioredoxin H-type 10, H-type Thioredoxin 10	THIOREDOXIN 3		1	Q8S091. TRXF in Zhang et al. 2015.	 Biochemical character	Os01g0913000	LOC_Os01g68480.1				GO:0006810 - transport, GO:0016209 - antioxidant activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0006662 - glycerol ether metabolic process		
9914	HMA2	OsHMA2, osHMA2, OsHMA2v	HEAVY METAL ATPASE 2	heavy metal ATPase 2, heavy metal transporter 2, heavy metal P-Type ATPase 2, heavy metal P1B-ATPase 2, Zn/ Cd-transporting ATPase 2	HEAVY METAL ATPASE 2	oshma2-1, oshma2-2, osham2-3	6	HQ646362. AB697186. P1B-ATPase heavy-metal transporter. GO:0071577:zinc ion transmembrane transport. TO:0006059: cadmium concentration	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os06g0700700	LOC_Os06g48720.1				GO:0016021 - integral to membrane, GO:0070574 - cadmium ion transmembrane transport, GO:0055069 - zinc ion homeostasis, GO:0015691 - cadmium ion transport, GO:0015086 - cadmium ion transmembrane transporter activity, GO:0010043 - response to zinc ion, GO:0006829 - zinc ion transport, GO:0007584 - response to nutrient, GO:0010233 - phloem transport, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0006754 - ATP biosynthetic process, GO:0046872 - metal ion binding, GO:0005385 - zinc ion transmembrane transporter activity, GO:0046873 - metal ion transmembrane transporter activity, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0032025 - response to cobalt ion, GO:0005524 - ATP binding	TO:0000102 - phosphorus sensitivity	PO:0020141 - stem node , PO:0009005 - root , PO:0025261 - pericycle cell , PO:0005417 - phloem , PO:0000074 - parenchyma cell , PO:0005020 - vascular bundle 
9915	_	OsFRO1	_	ferric reductase oxidase 1	_		3	AB126084. Os04g0444800.	 Biochemical character						GO:0005506 - iron ion binding, GO:0050660 - FAD binding, GO:0009767 - photosynthetic electron transport chain, GO:0000293 - ferric-chelate reductase activity, GO:0016021 - integral to membrane, GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0009055 - electron carrier activity		
9917	GSNOR1	OsGSNOR, GSNOR, OsGSNOR1	S-NITROSOGLUTATHIONE REDUCTASE 1	S-nitrosoglutathione reductase, S-nitrosoglutathione reductase 1	S-NITROSOGLUTATHIONE REDUCTASE 1		2	Q0DWH1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0815500	LOC_Os02g57040.1, LOC_Os02g57040.2, LOC_Os02g57040.3				GO:0009751 - response to salicylic acid stimulus, GO:0010040 - response to iron(II) ion, GO:0004022 - alcohol dehydrogenase (NAD) activity, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0006069 - ethanol oxidation, GO:0008270 - zinc ion binding, GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance	PO:0009005 - root 
9918	_	OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR, OsNR2, NR2, NIA2	_	nitrate reductase, nitrate reductase 2, NO3-reductase 2, NADH/NADPH-dependent NO3-reductase 2		nia2, nr2	2	OsNR2 in Gao et al. 2019, Kabange et al. 2021. ClO3- resistance QTL: qCR2. NIA2 in Zhou et al. 2021, Wang et al. 2021. GO:2000070: regulation of response to water deprivation. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Character as QTL - Yield and productivity,  Biochemical character	Os02g0770800	LOC_Os02g53130.1				GO:0005773 - vacuole, GO:0009703 - nitrate reductase (NADH) activity, GO:0043546 - molybdopterin cofactor binding, GO:0030151 - molybdenum ion binding, GO:0005506 - iron ion binding, GO:0050660 - FAD binding, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0010157 - response to chlorate, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0009845 - seed germination, GO:0010167 - response to nitrate, GO:0007263 - nitric oxide mediated signal transduction, GO:0009651 - response to salt stress, GO:0007584 - response to nutrient, GO:0042128 - nitrate assimilation, GO:0006809 - nitric oxide biosynthetic process, GO:0009416 - response to light stimulus, GO:0009610 - response to symbiotic fungus, GO:0005886 - plasma membrane	TO:0000346 - tiller number, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content, TO:0000480 - nutrient sensitivity, TO:0000430 - germination rate, TO:0000102 - phosphorus sensitivity, TO:0000396 - grain yield, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
9919	_	OsNIA2	_					nitrate reductase.	 Biochemical character								
9920	DIS1	OsDIS1, RIP5, OsRIP5, OsRING80, RING80	DROUGHT-INDUCED SINA PROTEIN 1	drought-induced SINA protein 1, drought induced seven in absentia (SINA) protein 1, drought induced seven in absentia protein 1, RMD Interacting Protein 5, RING-type E3 ubiquitin ligase 80	DROUGHT-INDUCED SINA PROTEIN 1	rip5	3	a SINA type E3 ligase which is involved in the drought-stress signal transduction. SIAH-type E3 ligase. The sextuple rip1-6 mutant displayed dwarf height, wrinkled seeds, wider leaves, defective microfilaments and increased flag leaf angles (Chang et al. 2022).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os03g0356414	LOC_Os03g24040.1				GO:0007015 - actin filament organization, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004842 - ubiquitin-protein ligase activity, GO:0048364 - root development, GO:0007275 - multicellular organismal development, GO:0005737 - cytoplasm	TO:0000718 - wrinkled seed, TO:0002710 - root shape, TO:0000124 - flag leaf angle, TO:0000370 - leaf width, TO:0000656 - root development trait, TO:0000207 - plant height	PO:0007520 - root development stage 
9921	_	OsNek6	_	NIMA-related kinase 6			2	Q6YY75.	 Tolerance and resistance - Stress tolerance	Os02g0590800	LOC_Os02g37830.1, LOC_Os02g37830.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9922	SKIPA	OsSKIPa, OsSKIP, SKIP	SKI INTERACTING PROTEIN A	Ski-interacting protein	SKI INTERACTING PROTEIN A		2	a drought and salt positive regulator. a rice homolog of human Ski-interacting protein (SKIP). a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Tolerance and resistance - Stress tolerance	Os02g0759800	LOC_Os02g52250.1				GO:0009414 - response to water deprivation, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0009651 - response to salt stress, GO:0005681 - spliceosomal complex	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
9923	SKIPB	OsSKIPb	SKI INTERACTING PROTEIN B		SKI INTERACTING PROTEIN B		6	LOC_Os06g11420. a rice homolog of human Ski-interacting protein (SKIP). OsSKIPb is most likely nonfunctional or apseudogene.		Os06g0218000	LOC_Os06g11420.1				GO:0005681 - spliceosomal complex, GO:0000398 - nuclear mRNA splicing, via spliceosome		
9924	NYC4	OsNYC4, THF1, OsTHF1	NON-YELLOW COLORING4	thylakoid formation1			7	Q84PB7. stay-green. GO:1902458: positive regulation of stomatal opening. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000070: regulation of response to water deprivation.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0558500	LOC_Os07g37250.1				GO:0010319 - stromule, GO:0010207 - photosystem II assembly, GO:0010150 - leaf senescence, GO:0009707 - chloroplast outer membrane, GO:0009570 - chloroplast stroma, GO:0045037 - protein import into chloroplast stroma, GO:0045038 - protein import into chloroplast thylakoid membrane, GO:0010182 - sugar mediated signaling, GO:0010027 - thylakoid membrane organization, GO:0009535 - chloroplast thylakoid membrane, GO:0015996 - chlorophyll catabolic process, GO:0009528 - plastid inner membrane, GO:0016021 - integral to membrane	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
9925	_	OsNek1	_	NIMA-related kinase 1			3	Q10GB1.	 Biochemical character	Os03g0636800	LOC_Os03g43590.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
9926	_	OsNek2	_	NIMA-related kinase 2			12	Q2QMH1.	 Biochemical character	Os12g0604700	LOC_Os12g41180.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9927	_	OsNek3, OsSTA192	_	NIMA-related kinase 3			7	Q6ZEZ5. Cytoplasmic Male Sterility-Related Protein Kinase. LOC_Os07g08000. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0176600	LOC_Os07g08000.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009066 - anther 
9928	_	OsNek4	_	NIMA-related kinase 4			5	Q60DG4.	 Biochemical character	Os05g0440800	LOC_Os05g36960.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
9929	_	OsNek5	_	NIMA-related kinase 5			1	Q94CU5.	 Biochemical character	Os01g0864700	LOC_Os01g64490.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
9930	BIRF1	OsBIRF1, OsRING50, RING50	BTH-INDUCED RING FINGER PROTEIN 1	BTH-induced RING finger protein 1, RING-type E3 ubiquitin ligase 50	BTH-INDUCED RING FINGER PROTEIN 1		2	a benzothiadiazole-induced RING finger E3 ligase.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os02g0743100	LOC_Os02g50930.1				GO:0031625 - ubiquitin protein ligase binding, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0016021 - integral to membrane, GO:0016567 - protein ubiquitination, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease	
9931	PLIM2A	OsPLIM2a, PLIM2a	POLLEN-SPECIFIC LIM PROTEIN 2A	pollen-specific LIM protein 2a	POLLEN-SPECIFIC LIM PROTEIN 2A		2	a LIM domain-containing protein.		Os02g0641000	LOC_Os02g42820.1				GO:0007584 - response to nutrient, GO:0008270 - zinc ion binding	TO:0000480 - nutrient sensitivity	
9932	PLIM2C	OsPLIM2c, PLIM2c	POLLEN-SPECIFIC LIM PROTEIN 2C	pollen-specific LIM protein 2c	POLLEN-SPECIFIC LIM PROTEIN 2C		10	a LIM domain-containing protein.		Os10g0503100	LOC_Os10g35930.1				GO:0008270 - zinc ion binding		
9933	_	SIP1, EIP5	_	SKIP interacting protein 1, SKIPa-interacting protein 1, SKIPa-interacting protein 1, EBR1-interacting protein 5			1	EU368691. LOC_Os01g61760.		Os01g0834100 	LOC_Os01g61760.1, LOC_Os01g61760.2, LOC_Os01g61760.3, LOC_Os01g61760.4				GO:0005856 - cytoskeleton, GO:0007049 - cell cycle		
9934	SIP2	OsSIP2, OsFIP, FIP, OsFIP37, FIP37	SKIP INTERACTING PROTEIN 2	SKIP interacting protein 2, SKIPa-interacting protein 2, SKIPa-interacting protein 2, FKBP12 INTERACTING PROTEIN 37	SKIP INTERACTING PROTEIN 2	fip	6	EU368692. ortholog of WTAP. N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex. GO:0036396: RNA N6-methyladenosine methyltransferase complex.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Embryo,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0474200 	LOC_Os06g27970.1				GO:0000278 - mitotic cell cycle, GO:0007276 - gamete generation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0048236 - plant-type spore development, GO:0009790 - embryonic development, GO:0009506 - plasmodesma, GO:0006396 - RNA processing, GO:0005856 - cytoskeleton, GO:0009556 - microsporogenesis, GO:0005634 - nucleus, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0001510 - RNA methylation	TO:0000180 - spikelet fertility, TO:0000455 - seed set percent, TO:0000437 - male sterility, TO:0000727 - sporogenesis, TO:0000531 - anther length, TO:0000074 - blast disease, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0000276 - drought tolerance, TO:0000429 - salt sensitivity, TO:0000303 - cold tolerance, TO:0000485 - sterility related trait, TO:0000175 - bacterial blight disease resistance, TO:0000620 - embryo development trait, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000445 - seed number	PO:0007631 - plant embryo stage , PO:0025543 - tapetum cell , PO:0020048 - microspore , PO:0009010 - seed 
9935	_	SIP3	_	SKIP interacting protein 3, SKIPa-interacting protein 3, SKIPa-interacting protein 3			8	EU368693. LOC_Os08g37500.		Os08g0481100 	LOC_Os08g37500.1						
9939	_	SIP7	_	SKIP interacting protein 7, SKIPa-interacting protein 7, SKIPa-interacting protein 7			2	EU368697. LOC_Os02g15980.	 Reproductive organ - panicle	Os02g0260500 	LOC_Os02g15980.1				GO:0000902 - cell morphogenesis, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
9940	_	SIP8	_	SKIP interacting protein 8, SKIPa-interacting protein 8, SKIPa-interacting protein 8			10	EU368698. LOC_Os10g27480.		Os10g0414800 	LOC_Os10g27480.1				GO:0016021 - integral to membrane		
9941	_	SIP9	_	SKIP interacting protein 9, SKIPa-interacting protein 9, SKIPa-interacting protein 9			2	EU368699. LOC_Os02g02690.		Os02g0119100	LOC_Os02g02690.1				GO:0070652 - HAUS complex, GO:0051225 - spindle assembly		
9942	_	SIP10	_	SKIP interacting protein 10, SKIPa-interacting protein 10, SKIPa-interacting protein 10			5	EU368700. LOC_Os05g07860.		Os05g0170800 	LOC_Os05g07860.1						
9946	SIP14	OsSIP14, RIP1, OsRIP1, OsRING77, RING77	SKIP INTERACTING PROTEIN 14	SKIP interacting protein 14, SKIPa-interacting protein 14, SKIPa-interacting protein 14, RMD Interacting Protein 1, RING-type E3 ubiquitin ligase 77	SKIP INTERACTING PROTEIN 14	rip1	2	EU368704. GO:0061630: ubiquitin protein ligase activity. SIAH-type E3 ligase. The sextuple rip1-6 mutant displayed dwarf height, wrinkled seeds, wider leaves, defective microfilaments and increased flag leaf angles (Chang et al. 2022).	 Vegetative organ - Root,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape	Os02g0293400 	LOC_Os02g19140.1				GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0007015 - actin filament organization, GO:0048364 - root development, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0007275 - multicellular organismal development, GO:0016874 - ligase activity	TO:0000656 - root development trait, TO:0000124 - flag leaf angle, TO:0000370 - leaf width, TO:0000207 - plant height, TO:0000718 - wrinkled seed, TO:0002710 - root shape	PO:0007520 - root development stage 
9947	_	SIP15	_	SKIP interacting protein 15, SKIPa-interacting protein 15, SKIPa-interacting protein 15			12	EU368705. LOC_Os12g31790.		Os12g0502100	LOC_Os12g31790.1						
9948	_	SIP16	_	SKIP interacting protein 16, SKIPa-interacting protein 16, SKIPa-interacting protein 16			2	EU368706. LOC_Os02g58470.		Os02g0831400	LOC_Os02g58470.1						
9949	_	SIP17, OsBTBN25, BTBN25	_	SKIP interacting protein 17, SKIPa-interacting protein 17, SKIPa-interacting protein 17, BTB-type E3 ubiquitin ligase N25			12	EU368707. LOC_Os12g41910. Ubiquitin-ligase complex protein.	 Biochemical character	Os12g0613250 	LOC_Os12g41910.1, LOC_Os12g41910.2						
9955	_	SIP23, OsRING169, RING169	_	SKIP interacting protein 23, SKIPa-interacting protein 23, SKIPa-interacting protein 23, RING-type E3 ubiquitin ligase 169			4	EU368713. LOC_Os04g33030.		Os04g0403200 	LOC_Os04g33030.1, LOC_Os04g33030.2				GO:0008270 - zinc ion binding		
9957	SIP25	OsSIP25, OsTMF, TMF	SKIP INTERACTING PROTEIN 25	SKIP interacting protein 25, SKIPa-interacting protein 25, SKIPa-interacting protein 25, TATA modulatory factor	SKIP INTERACTING PROTEIN 25	ostmf-1, ostmf-2	5	EU368715. a homologue of the human TATA modulatory factor (TMF). the candidate gene of qGRG3-2 (QTL for germination rate grades on the 3rd day) on chromosome 5, GO:0001216: DNA-binding transcription activator activity. TO:0000993: cellulose content. TO:0000931: seed quality trait.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Other	Os05g0559900 	LOC_Os05g48620.1				GO:0009827 - plant-type cell wall modification, GO:0009651 - response to salt stress, GO:0052386 - cell wall thickening, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000605 - hydrogen peroxide content, TO:0000430 - germination rate, TO:0006007 - polysaccharide content, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0001034 - relative plant height, TO:0000303 - cold tolerance	
9958	_	SIP26	_	SKIP interacting protein 26, SKIPa-interacting protein 26, SKIPa-interacting protein 26			2	EU368716. LOC_Os02g53520. AK121333.		Os02g0775400 	LOC_Os02g53520.1				GO:0003777 - microtubule motor activity, GO:0016887 - ATPase activity, GO:0007049 - cell cycle, GO:0005856 - cytoskeleton, GO:0005871 - kinesin complex, GO:0007018 - microtubule-based movement		
9959	_	SIP27	_	SKIP interacting protein 27, SKIPa-interacting protein 27, SKIPa-interacting protein 27			2	EU368717. LOC_Os02g28850.		Os02g0489800 	LOC_Os02g28850.1				GO:0007018 - microtubule-based movement, GO:0005874 - microtubule, GO:0007049 - cell cycle, GO:0005856 - cytoskeleton, GO:0005871 - kinesin complex, GO:0005524 - ATP binding, GO:0008574 - plus-end-directed microtubule motor activity		
9960	_	SIP28	_	SKIP interacting protein 28, SKIPa-interacting protein 28, SKIPa-interacting protein 28			10	EU368718. LOC_Os10g16440. Ubiquitin-ligase complex protein. GO:0001046: core promoter sequence-specific DNA binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding.	 Other	Os10g0315400 	LOC_Os10g16440.1, LOC_Os10g16440.2				GO:0006366 - transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter		
9961	_	SIP29	_	SKIP interacting protein 29, SKIPa-interacting protein 29, SKIPa-interacting protein 29			4	EU368719. LOC_Os04g07830.		Os04g0160600 	LOC_Os04g07830.1						
9962	_	SIP30	_	SKIP interacting protein 30, SKIPa-interacting protein 30, SKIPa-interacting protein 30			7	EU368720. LOC_Os07g32450.		Os07g0508200 	LOC_Os07g32450.1				GO:0005856 - cytoskeleton, GO:0048573 - photoperiodism, flowering, GO:0007049 - cell cycle		
9963	SIP31	OsSIP31	SKIPA-INTERACTING PROTEIN 31	SKIP interacting protein 31, SKIPa-interacting protein 31, SKIPa-interacting protein 31	SKIPA-INTERACTING PROTEIN 31		3	EU368721. CT828890. Ubiquitin-ligase complex protein. osa-miR2102 target gene.		Os03g0668500 	LOC_Os03g46570.1						
9964	_	SIP32	_	SKIP interacting protein 32, SKIPa-interacting protein 32, SKIPa-interacting protein 32			3	EU368722. LOC_Os03g18300.		Os03g0294100 	LOC_Os03g18300.1				GO:0009941 - chloroplast envelope		
9965	SIP33	OsSIP33, RIP2, OsRIP2, OsRING76, RING76	SKIP INTERACTING PROTEIN 13	SKIP interacting protein 33, SKIPa-interacting protein 33, SKIPa-interacting protein 33, RMD Interacting Protein 2, RING-type E3 ubiquitin ligase 76	SKIP INTERACTING PROTEIN 13	rip2	5	EU368723. Ubiquitin-ligase complex protein. SIAH-type E3 ligase. The sextuple rip1-6 mutant displayed dwarf height, wrinkled seeds, wider leaves, defective microfilaments and increased flag leaf angles (Chang et al. 2022). GO:0061630: ubiquitin protein ligase activity.	 Vegetative organ - Root,  Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os05g0238200 	LOC_Os05g14860.1				GO:0007275 - multicellular organismal development, GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0007015 - actin filament organization, GO:0048364 - root development, GO:0016874 - ligase activity, GO:0005634 - nucleus	TO:0002710 - root shape, TO:0000656 - root development trait, TO:0000124 - flag leaf angle, TO:0000207 - plant height, TO:0000718 - wrinkled seed, TO:0000370 - leaf width	PO:0007520 - root development stage 
9966	_	SIP34	_	SKIP interacting protein 34, SKIPa-interacting protein 34, SKIPa-interacting protein 34			1	EU368724. LOC_Os01g02150. Extensin family protein.		Os01g0111900	LOC_Os01g02150.1						
9968	SGT	OsSGT, UGT74H3, OsUGT74H3	SALICYLIC ACID GLUCOSYLTRANSFERASE	salicylic acid glucosyltransferase, SA-glucosyltransferase, UDP-glucose-dependent glycosyltransferase 74H3	SALICYLIC ACID GLUCOSYLTRANSFERASE		9		 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os09g0518200	LOC_Os09g34250.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0009611 - response to wounding, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle		PO:0009049 - inflorescence , PO:0009066 - anther 
9969	2R_MYB36 	OsMYB2, MYB2, Os2R_MYB36	R2R3-MYB TRANSCRIPTION FACTOR 36	R2R3-MYB Transcription Factor 36	R2R3-MYB TRANSCRIPTION FACTOR 36		3	a rice R2R3-type MYB gene.	 Tolerance and resistance - Stress tolerance	Os03g0315400	LOC_Os03g20090.1				GO:0009609 - response to symbiotic bacterium, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009617 - response to bacterium, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
9970	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b, OsMYB15, MYB15, Os2R_MYB46, 2R_MYB46	_	Myb transcription factor 4, myb transcription factor 8, transcription factor MYB8, R2R3-MYB Transcription Factor 46			4	a rice R2R3-type MYB gene. R2R3-MYB. Q7XBH4. Y11414. C72644. AY323484. OsMyb8 in Lee et al. 2000. a MAMP-Responsive MYB Transcription Factor. OsMYB13b in Zhao et al. 2019. Wall-Associated regulator. GO:1900055: regulation of leaf senescence. OsMYB15 in Lu et al. 2022. OsMYB55 in Muthuramalingam et al. 2022, Ding et al. 2023. GO:1990641: response to iron ion starvation.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Coloration	Os04g0517100	LOC_Os04g43680.1				GO:0009964 - negative regulation of flavonoid biosynthetic process, GO:0050832 - defense response to fungus, GO:0002238 - response to molecule of fungal origin, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009609 - response to symbiotic bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0010150 - leaf senescence, GO:0006950 - response to stress, GO:0009409 - response to cold, GO:0009617 - response to bacterium	TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000224 - iron sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000675 - ferulic acid content, TO:0000074 - blast disease, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000249 - leaf senescence, TO:0000255 - sheath blight disease resistance	PO:0025034 - leaf , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009066 - anther , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009038 - palea , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009047 - stem 
9971	MYB3R2	OsMYB3R-2, OsMYB3R2, OsMSL07, MSL07, MSL7, DLN28, OsDLN28	_	O. sativa R1R2R3 MYB-2, R1R2R3 MYB-2, MYB3R transcription factor 2, Myb/SANT-LIKE 7, DLN repressor 28, DLN motif protein 28		osmyb3r2, osmyb3r2-1, osmyb3r2-2	1	an R1R2R3 MYB gene. R2R3-MYB. BAD81765.	 Tolerance and resistance - Stress tolerance	Os01g0841500	LOC_Os01g62410.2, LOC_Os01g62410.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009631 - cold acclimation, GO:0003682 - chromatin binding, GO:0009609 - response to symbiotic bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath 
9972	MYBS3	OsMYBS3	TRANSCRIPTION FACTOR MYBS3	transcription factor MYBS3	TRANSCRIPTION FACTOR MYBS3		10	AAN63154. AY151044. a MYB-related protein. Q7XC57.	 Tolerance and resistance - Stress tolerance	Os10g0561400 	LOC_Os10g41200.3, LOC_Os10g41200.2, LOC_Os10g41200.1				GO:0009744 - response to sucrose stimulus, GO:0009723 - response to ethylene stimulus, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003682 - chromatin binding, GO:0009739 - response to gibberellin stimulus, GO:0046872 - metal ion binding	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
9973	MYB3R1	OsMYB3R-1, OsMYB3R1, Os2R_MYB95, 2R_MYB95	R1R2R3-MYB TRANSCRIPTION FACTOR 1	O. sativa R1R2R3 MYB-1, R1R2R3-MYB Transcription Factor 1, R2R3-MYB Transcription Factor 95	R1R2R3-MYB TRANSCRIPTION FACTOR 1		12	AJ430051. GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.	 Other	Os12g0238000 	LOC_Os12g13570.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding		
9974	CYCB1;4	OsCycB1;4, Orysa;CycB1;4, CYCB1-3, OsCYCB1-3	CYCLIN-B1-4	B-type cyclin 1;4	CYCLIN-B1-4		1	AY647458. Q0JNK6. CYCB1-3 in Zhao et al. 2018.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0281200	LOC_Os01g17402.2, LOC_Os01g17402.1				GO:0005634 - nucleus, GO:0019901 - protein kinase binding, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle, GO:0051301 - cell division		
9975	MYBS1	OsMYBS1, Os-MYBS1, Mybs1	TRANSCRIPTION FACTOR MYBS1	transcription factor MYBS1	TRANSCRIPTION FACTOR MYBS1		1	AY151042.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os01g0524500	LOC_Os01g34060.1				GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0046686 - response to cadmium ion, GO:0009743 - response to carbohydrate stimulus, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0003682 - chromatin binding, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009739 - response to gibberellin stimulus	TO:0000280 - seedling vigor, TO:0000276 - drought tolerance, TO:0000253 - seed dormancy, TO:0000074 - blast disease, TO:0000168 - abiotic stress trait	
9976	MYBS2	OsMYBS2	TRANSCRIPTION FACTOR MYBS2	transcription factor MYBS2	TRANSCRIPTION FACTOR MYBS2		10	AY151043. Q7XC51. GO:0080148: negative regulation of response to water deprivation.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os10g0562100	LOC_Os10g41260.1				GO:0080050 - regulation of seed development, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009739 - response to gibberellin stimulus, GO:0045926 - negative regulation of growth, GO:0047484 - regulation of response to osmotic stress, GO:0005634 - nucleus, GO:0033500 - carbohydrate homeostasis, GO:0009744 - response to sucrose stimulus, GO:0003677 - DNA binding, GO:0042594 - response to starvation, GO:0009408 - response to heat, GO:0009743 - response to carbohydrate stimulus, GO:0010187 - negative regulation of seed germination, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000590 - grain weight, TO:0000449 - grain yield per plant, TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance	
9977	MDR7	MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsMRP4, OsABCB11, ABCB11, MR7, OsMR7	MULTIDRUG RESISTANCE 7	MULTIDRUG RESISTANCE7, multidrug resistance protein 4, ABC transporter superfamily ABCB subgroup member 5, P-Glycoprotein 5, Iron-sulfur cluster protein 28	MULTIDRUG RESISTANCE 7		1	AJ535065. OsABCB11 in Wang et al. 2017.	 Tolerance and resistance - Stress tolerance	Os01g0695800	LOC_Os01g50100.1				GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0009409 - response to cold	TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	
9978	TPP3	OsTPP3, TPS3, OsTPS3	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3	trehalose-6-phosphate synthase 3	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3		7	AP004341. Q7XI41. BGIOSGA004392.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0624600	LOC_Os07g43160.1				GO:0004805 - trehalose-phosphatase activity, GO:0005992 - trehalose biosynthetic process		
9979	TPP4	OsTPP4, OsTPP7, TPP7, OsTPP2, TPP2	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 4		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 4		2	AP004119. Q6ZGP8. OsTPP7 in Ye et al. 2018. TPP2 in Li et al. 2022. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0753000	LOC_Os02g51680.1				GO:0009413 - response to flooding, GO:0005992 - trehalose biosynthetic process	TO:0000114 - flooding related trait	
9980	TPP5	OsTPP5	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 5		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 5		4	AL606633. Q7XT34.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0554000	LOC_Os04g46760.1				GO:0003824 - catalytic activity, GO:0005992 - trehalose biosynthetic process		
9981	TPP6	OsTPP6, OsTPP5, TPP5	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6		8	AP004658. Q6ZAL2. TPP5 in Li et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0409100	LOC_Os08g31630.2, LOC_Os08g31630.1				GO:0004805 - trehalose-phosphatase activity, GO:0005992 - trehalose biosynthetic process		
9982	TPP7	OsTPP7	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 7	trehalose-6-phosphate phosphatase 7	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 7	tpp7-1, tpp7-2	9	AP005580. Q6H5L4. KT384371. anaerobic germination tolerance. GO:0036293: response to decreased oxygen levels.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Biochemical character	Os09g0369400	LOC_Os09g20390.2, LOC_Os09g20390.3, LOC_Os09g20390.1				GO:0001666 - response to hypoxia, GO:0005992 - trehalose biosynthetic process, GO:0005991 - trehalose metabolic process, GO:0009413 - response to flooding, GO:0043610 - regulation of carbohydrate utilization, GO:0003824 - catalytic activity, GO:0034059 - response to anoxia, GO:0010182 - sugar mediated signaling, GO:0033500 - carbohydrate homeostasis, GO:0042594 - response to starvation, GO:0051093 - negative regulation of developmental process, GO:0045926 - negative regulation of growth, GO:0043617 - cellular response to sucrose starvation, GO:0031667 - response to nutrient levels	TO:0000653 - seed development trait, TO:0000442 - plant fresh weight, TO:0000480 - nutrient sensitivity, TO:0000227 - root length, TO:0000328 - sucrose content, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000015 - oxygen sensitivity, TO:0001007 - coleoptile length	
9983	TPP8	OsTPP8, OsTPP2	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 8		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 8		6	LOC_Os06g11840. AP004727. Q0DDI1. OsTPP2 in Ye et al. 2018.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0222100	LOC_Os06g11840.1				GO:0009413 - response to flooding, GO:0003824 - catalytic activity, GO:0005992 - trehalose biosynthetic process	TO:0000114 - flooding related trait	
9984	TPP9	OsTPP9, OsTPP3, TPP3	TREHALOSE-6-PHOSPHATE PHOSHPHATASE 9		TREHALOSE-6-PHOSPHATE PHOSHPHATASE 9		3	AC103551. Q10KF5. TPP3 in Li et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0386500	LOC_Os03g26910.1				GO:0005992 - trehalose biosynthetic process		
9985	LIP19	Lip19, lip19, OsLIP9, OsbZIP38, bZIP38	LOW-TEMPERATURE-INDUCED PROTEIN 19	low-temperature-induced protein 19, bZIP transcription factor 38	LOW-TEMPERATURE-INDUCED PROTEIN 19		5	a bZIP-type DNAbinding protein. X57325. BP432981. HQ858806.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0129300	LOC_Os05g03860.1, LOC_Os05g03865.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0030912 - response to deep water, GO:0046983 - protein dimerization activity, GO:0005634 - nucleus	TO:0000524 - submergence tolerance	
9986	OBF1	OsOBF1, OsbZIP87	OCS-ELEMENT BINDING FACTOR 1	Oryza sativa OBF1, ocs-element Binding Factor 1, bZIP transcription factor 87	OCS-ELEMENT BINDING FACTOR 1		12	a LIP19-interacting protein. AB185280.	 Tolerance and resistance - Stress tolerance	Os12g0560900	LOC_Os12g37410.1, LOC_Os12g37415.1				GO:0043565 - sequence-specific DNA binding, GO:0046983 - protein dimerization activity, GO:0003700 - transcription factor activity		
9988	_	LIP9, lip9	_	low-temperature-induced protein 9	_			AB011367.	 Tolerance and resistance - Stress tolerance								
9989	ZIP8	OsZIP8, OsZIP1, ZIP1, OsZIP13, ZIP13	ZINC TRANSPORTER 8	zinc transporter 8, Zrt-Irt-like protein 8, Zinc-regulated transporter, Iron-regulated transporter-like protein 8, Zinc and Iron-regulated Protein 8, ZRT-IRT-related protein 8, ZIP transporter 8, Zinc- and iron-regulating transport-like protein 13, Zn- and Fe-regulating transport-like protein 13	ZINC TRANSPORTER 8		7	AB559523, AB559524, AB559525. A3BI11. AY327038.  OsZIP8 in Zhao et al. 2014, Sui et al. 2019. OsZIP1 in Chen et al. 2018.  OsZIP13 in Zeng et al. 2024. TO:0006049: iron concentration. TO:0006053: zinc concentration.GO:0035864: response to potassium ion. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0232800	LOC_Os07g12890.1, LOC_Os07g12890.2				GO:0010269 - response to selenium ion, GO:0005385 - zinc ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0051592 - response to calcium ion, GO:0046686 - response to cadmium ion, GO:0010042 - response to manganese ion	TO:0000351 - zinc sensitivity, TO:0000032 - selenium sensitivity, TO:0000073 - manganese sensitivity	
9990	BLS1	bls1	BACTERIAL LEAF STREAK RESISTANCE 1	Bacterial Leaf Streak Resistance 1			6	A bacterial leaf streak (BLS)resistance gene bls1, derived from the wild rice species Oryza rufipogon Griff(DP3), has been identified and primarily mapped on the short arm of chromosome 6. A BC2F2 population was constructed to map BLS-resistance gene. The segregation of the resistant and susceptible plants in BC2F2 in a ratio of 1 to 3, suggested that a recessive gene confers BLS resistance in DP3.In bulked segregant analysis (BSA), two SSR markers RM8116 and RM584 were identified to be polymorphic in resistant and susceptible DNA bulks. For further mapping the resistance gene, six polymorphic markers around the target region were applied to analyze the genotypes of the BC2F2 individuals. As a result, the BLS-resistant gene, designated as bls1, was mapped in a 4.0-cM region flanked by RM587 and RM510 on the short arm of chromosome 6.	 Tolerance and resistance - Disease resistance								
9991	PUT1	OsPUT1, PUT, OsLAT1	POLYAMINE UPTAKE TRANSPORTER 1	PA uptake transporter 1, polyamine uptake transporter 1, Polyamine Uptake Transporter1			2	Spermidine transporter. Tissue-specific expression  of PUT1 by semiquantitative RT-PCR showed that the gene was expressed in all tissues except seeds and roots. Q6Z8D0. GO:1902047: polyamine transmembrane transport. LOC_Os02g47210. GO:1900055: regulation of leaf senescence.	 Reproductive organ - Heading date,  Biochemical character,  Vegetative organ - Leaf	Os02g0700500	LOC_Os02g47210.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0015203 - polyamine transmembrane transporter activity, GO:2000028 - regulation of photoperiodism, flowering, GO:0016021 - integral to membrane, GO:0015848 - spermidine transport, GO:0015293 - symporter activity, GO:0010150 - leaf senescence, GO:0005886 - plasma membrane, GO:0015846 - polyamine transport, GO:0005783 - endoplasmic reticulum, GO:0015606 - spermidine transmembrane transporter activity	TO:0002616 - flowering time, TO:0000249 - leaf senescence	
9992	ARF8	OsARF8, OsARF12, ARF12	AUXIN RESPONSE FACTOR 8	auxin response factor-8, auxin response factor 8, auxin responsive factor 8, auxin response factor-12, auxin response factor 12	AUXIN RESPONSE FACTOR 8	osarf12, osarf12T, arf8-1, arf12-1, arf12-2	4	AB071298, Q0J951. the main target of miR167.OsARF12 in Ni et al. 2014, Phule et al. 2018, Zhao et al. 2019, Liu et al. 2019, Wang et al. 2020, Chen et al. 2020, Qin et al. 2020, Li et al. 2020, Zhang et al. 2020, Huang et al. 2021, Wang et al. 2023, Guo et al. 2023, Ma et al. 2023, Zhao et al. 2023. GO:2000012: regulation of auxin polar transport. GO:0140272: exogenous protein binding. GO:1990110: callus formation.  TO:0020102: phosphate content. TO:0000919: grain weight. TO:0000975: grain width.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Other,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os04g0671900	LOC_Os04g57610.3, LOC_Os04g57610.1				GO:0050688 - regulation of defense response to virus, GO:0009733 - response to auxin stimulus, GO:0009630 - gravitropism, GO:0051302 - regulation of cell division, GO:0009926 - auxin polar transport, GO:0005634 - nucleus, GO:0070482 - response to oxygen levels, GO:0006350 - transcription, GO:0051607 - defense response to virus, GO:0048316 - seed development, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling	TO:0000399 - grain thickness, TO:0000050 - inflorescence branching, TO:0000148 - viral disease resistance, TO:0000206 - leaf angle, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000428 - callus induction, TO:0000074 - blast disease, TO:0002693 - gravity response trait, TO:0000401 - plant growth hormone sensitivity, TO:0000015 - oxygen sensitivity, TO:0000163 - auxin sensitivity, TO:0000567 - tiller angle, TO:0000653 - seed development trait, TO:0002677 - brassinosteroid sensitivity, TO:0000734 - grain length	PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0020039 - leaf lamina , PO:0009005 - root 
9993	ARF6B	OsARF6b, OsARF25, ARF25	AUXIN RESPONSE FACTOR 6B	auxin response factor-6B, auxin response factor 6B, auxin response factor-25, auxin response factor 25	AUXIN RESPONSE FACTOR 6B	osarf25, arf25-1, arf25-3	12	AB071295, Q2QM84. OsARF25 in Ni et al. 2014, Zhao et al. 2014, Zhang et al. 2019, Zhao et al. 2019, Li et al. 2020, Zhang et al. 2020, Huang et al. 2021, Li et al. 2021, Suzuki et al. 2022, Zhang  et al. 2020, Ma et al. 2023, Guo et al. 2023. one of the genes targeted by OsmiR5488. GO:2000012: regulation of auxin polar transport. GO:0140272: exogenous protein binding. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. TO:0020100: nitrate uptake. GO:1902025: nitrate import.	 Other,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0613700	LOC_Os12g41950.1				GO:0009651 - response to salt stress, GO:0060359 - response to ammonium ion, GO:0009733 - response to auxin stimulus, GO:0009926 - auxin polar transport, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009630 - gravitropism, GO:0009725 - response to hormone stimulus, GO:0006350 - transcription, GO:0050832 - defense response to fungus, GO:0009908 - flower development, GO:0010167 - response to nitrate, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000163 - auxin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000734 - grain length, TO:0006001 - salt tolerance, TO:0002693 - gravity response trait, TO:0000567 - tiller angle	PO:0025034 - leaf , PO:0020039 - leaf lamina , PO:0009005 - root 
9994	MIR167D	miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p	MICRORNA167D	MICRORNA167d	_		7	OsARF12 was inhibited by osa-miRNA167d. miRBASE accession: MI0001109. LM383067, LM379321.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000429 - salt sensitivity	
9995	ETT1	OsARF15, ARF15, OsETT1, ARF3b, OsARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3, DLN154, OsDLN154	ETTIN 1	auxin response factor-15, auxin response factor 15, OsETTIN1, ETTIN1, DLN repressor 154, DLN motif protein 154	ETTIN 1	ARF3bmut, arf15-1, arf15-2, arf15-3, arf15-4, arf15-5, arf15-6, osarf3b	5	a rice ortholog of Arabidopsis ETTIN. AB071290, Q8S985. ARF3b in Song et al. 2012. OsARF3 and OsARF3-1 in Lu et al. 2018. miR390's target (Lu et al. 2018). TO:0001066: number of metaxylem vessels.  TO:0000985: root system morphology trait. GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence. 	 Vegetative organ - Root,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0563400	LOC_Os05g48870.7, LOC_Os05g48870.9, LOC_Os05g48870.8, LOC_Os05g48870.1, LOC_Os05g48870.5, LOC_Os05g48870.6				GO:0090058 - metaxylem development, GO:0003677 - DNA binding, GO:0009734 - auxin mediated signaling pathway, GO:0009408 - response to heat, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0050832 - defense response to fungus, GO:0009629 - response to gravity, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus	TO:0000175 - bacterial blight disease resistance, TO:0000492 - leaf shape, TO:0000074 - blast disease, TO:0000470 - vascular tissue related trait, TO:0000614 - lemma shape, TO:0000370 - leaf width, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0002693 - gravity response trait	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009010 - seed 
9996	ETT2	OsARF2, ARF2, OsETT2, ARF3a, OsARF3a, DLN16, OsDLN16, ARF3	ETTIN 2	auxin response factor-2, auxin response factor 2, OsETTIN2, ETTIN2, DLN repressor 16, DLN motif protein 16, ARF2-LIKE	ETTIN 2	ARF3amut, ARF3amut-1, ARF3amut-2, Osarf2, Osarf2-1, Osarf2-2, osarf3a	1	a rice ortholog of Arabidopsis ETTIN. AB071291, Q0JKI9. ARF3a in Song et al. 2012.  ARF3 in Maliket al. 2020. OsARF2 in Zhao et al. 2022. ARF2-LIKE in Zhang et al. 2020. TO:0000747: phyllome anatomy and morphology trait. TO:0006064: rolled leaf. TO:0000835: leaf sheath anatomy and morphology trait. PO:0030123: panicle inflorescence. GO:0052575: carbohydrate localization. TO:1000022: anther morphology trait. GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium. GO:2000377: regulation of reactive oxygen species metabolic process.	 Other,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0670800	LOC_Os01g48060.2, LOC_Os01g48060.3, LOC_Os01g48060.1				GO:0009733 - response to auxin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0009415 - response to water, GO:0009901 - anther dehiscence, GO:0048653 - anther development, GO:0048316 - seed development, GO:0009629 - response to gravity, GO:0048608 - reproductive structure development, GO:0009408 - response to heat, GO:0009734 - auxin mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium	TO:0000237 - water stress trait, TO:0000175 - bacterial blight disease resistance, TO:0000474 - glume opening, TO:0002693 - gravity response trait, TO:0001004 - basal tiller number, TO:0000655 - leaf development trait, TO:0000653 - seed development trait, TO:0000163 - auxin sensitivity, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0002718 - awn anatomy and morphology trait	PO:0001170 - seed development stage , PO:0009047 - stem , PO:0009072 - plant ovary , PO:0009049 - inflorescence , PO:0025530 - reproductive shoot system development stage , PO:0009066 - anther , PO:0025034 - leaf , PO:0001035 - G anther dehiscence stage 
9997	ARF2	OsARF2, OsARF4, ARF4	AUXIN RESPONSE FACTOR 2	auxin response factor-2, auxin response factor 2, auxin response factor-4, auxin response factor 4	AUXIN RESPONSE FACTOR 2	arf4-5, arf4-5a, arf4-5b, arf4-8	1	AB071293, Q5JK20. OsARF4 in Hu et al. 2018, Sun et al. 2017, Guo et al. 2019, Li et al. 2021, Ma et al. 2023. GEO DataSets: GSE98924. GO:1990110: callus formation.	 Other,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Seed - Morphological traits	Os01g0927600	LOC_Os01g70270.4, LOC_Os01g70270.3, LOC_Os01g70270.2, LOC_Os01g70270.1				GO:0003677 - DNA binding, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0048316 - seed development, GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000653 - seed development trait, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000428 - callus induction	PO:0001170 - seed development stage 
9998	MP	OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11	MONOPTEROS	rice ortholog of Arabidopsis MONOPTEROS, OsMONOPTEROS, MONOPTEROS, auxin response factor-5, auxin response factor 5, auxin response factor-11, auxin response factor 11, DLN repressor 125, DLN motif protein 125	AUXIN RESPONSE FACTOR 5	osarf11	4	AB071292, Q8S983. OsARF11 in Qin et al. 2020, Zhang et al. 2021, Uzair et al. 2021, Li et al. 2022, Ma et al. 2023.	 Other,  Tolerance and resistance - Disease resistance	Os04g0664400	LOC_Os04g56850.2, LOC_Os04g56850.1				GO:0010305 - leaf vascular tissue pattern formation, GO:0016020 - membrane, GO:0009942 - longitudinal axis specification, GO:0009908 - flower development, GO:0051607 - defense response to virus, GO:0050687 - negative regulation of defense response to virus, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0048507 - meristem development, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0048364 - root development	TO:0000148 - viral disease resistance	PO:0009047 - stem 
9999	ARF6A	OsARF6a, OsARF6, ARF6	AUXIN RESPONSE FACTOR 6A	auxin response factor-6a, auxin response factor 6a, auxin response factor-6, auxin response factor 6, auxin responsive factor 6	AUXIN RESPONSE FACTOR 6A	osarf6, osarf6-1, osarf6-2, osarf6-3, osarf6-4	2	AB071294, Q6H6V4. GO:0140272: exogenous protein binding. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:2001008: positive regulation of cellulose biosynthetic process. TO:0020100: nitrate uptake. GO:1902025: nitrate import. TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound.	 Other,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os02g0164900	LOC_Os02g06910.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0060359 - response to ammonium ion, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009808 - lignin metabolic process, GO:0009908 - flower development, GO:0010167 - response to nitrate, GO:0006350 - transcription, GO:0030244 - cellulose biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051511 - negative regulation of unidimensional cell growth, GO:0050832 - defense response to fungus, GO:0009834 - secondary cell wall biogenesis	TO:0000074 - blast disease, TO:0000382 - 1000-seed weight, TO:0000731 - lignin content, TO:0000346 - tiller number, TO:0000590 - grain weight, TO:0000163 - auxin sensitivity, TO:0000734 - grain length, TO:0000397 - grain size, TO:0002688 - leaf lamina joint bending, TO:0002672 - auxin content, TO:0000411 - seed length to width ratio, TO:0000396 - grain yield, TO:0000329 - tillering ability, TO:0000124 - flag leaf angle, TO:0000207 - plant height	PO:0020121 - lateral root , PO:0025034 - leaf , PO:0009000 - pulvinus , PO:0009047 - stem , PO:0009039 - glume , PO:0000026 - primary root tip , PO:0009046 - flower , PO:0020103 - flag leaf , PO:0020039 - leaf lamina , PO:0005010 - anther septum 
10000	ARF7A	OsARF7a, OsARF19, ARF19, OsARF7	AUXIN RESPONSE FACTOR 7A	auxin response factor-7a, auxin response factor 7a, auxin response factor-19, auxin response factor 19	AUXIN RESPONSE FACTOR 7A	osarf19	6	AB071296, Q0D9R7. OsARF19 in Zhang et al. 2014, Xu et al. 2018, Yamauchi et al. 2019, Shao et al. 2019, Qin et al. 2020, Cerise et al. 2021, Li et al. 2021, Suzuki et al. 2022, Ling et al. 2022, Guo et al. 2023, Chen et al. 2019. OsARF7 and OsARF19 in Shafiq et al. 2017, Wang et al. 2020, Zhang  et al. 2020. TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound. TO:0020100: nitrate uptake. GO:1902025: nitrate import. GO:1990110: callus formation.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Other,  Tolerance and resistance - Stress tolerance	Os06g0702600	LOC_Os06g48950.1				GO:0009734 - auxin mediated signaling pathway, GO:0048527 - lateral root development, GO:0009742 - brassinosteroid mediated signaling, GO:0060359 - response to ammonium ion, GO:0010311 - lateral root formation, GO:0010618 - aerenchyma formation, GO:0010224 - response to UV-B, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010167 - response to nitrate, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription	TO:0002677 - brassinosteroid sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000206 - leaf angle, TO:0002672 - auxin content, TO:0000428 - callus induction	PO:0000258 - root cortex , PO:0005029 - root primordium 
10001	ARF7B	OsARF7b, OsARF21, DLN216, OsDLN216	AUXIN RESPONSE FACTOR 7B	auxin response factor-7b, auxin response factor 7b, auxin response factor-21, auxin response factor 21, DLN repressor 216, DLN motif protein 216	AUXIN RESPONSE FACTOR 7B		8	AB071297, Q6YZW0. OsARF21 in Zhao et al. 2014, Suzuki et al. 2022, Ma et al. 2023.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Culm,  Other,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape	Os08g0520500	LOC_Os08g40900.2, LOC_Os08g40900.1				GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000734 - grain length, TO:0000456 - spikelet number, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0000411 - seed length to width ratio, TO:0000152 - panicle number, TO:0000590 - grain weight	
10002	RST1	OsARF10, ARF10, OsARF18, ARF18, OsRST1, GLR1, OsGLR1	RICE SALT TOLERANT 1	auxin response factor-10, auxin response factor 10, auxin response factor-18, auxin response factor 18, rice salt tolerant 1, glufosinate-resistant rice 1	AUXIN RESPONSE FACTOR 10	rst1, osarf18, osarf18-1, osarf18-2, glr1, glr1-ko1, glr1-ko2, glr1-ko3, glr1-ko4, glr1-ko5	6	AB071299, Q653H7. miR160a-f target gene. OsARF18 in Huang et al. 2016, Zhou et al. 2022, Zhao et al. 2022, Deng et al. 2022, An et al. 2022. TO:0006064: rolled leaf. GO:0052575: carbohydrate localization. TO:1000022: anther morphology trait. GO:0097164: ammonium ion metabolic process. TO:0000975: grain width. TO:0000949: seedling growth and development trait. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os06g0685700	LOC_Os06g47150.4, LOC_Os06g47150.3, LOC_Os06g47150.2, LOC_Os06g47150.1				GO:0048316 - seed development, GO:0009635 - response to herbicide, GO:0010481 - epidermal cell division, GO:0019740 - nitrogen utilization, GO:0009908 - flower development, GO:0006350 - transcription, GO:0051172 - negative regulation of nitrogen compound metabolic process, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009901 - anther dehiscence, GO:0055075 - potassium ion homeostasis, GO:0048653 - anther development, GO:0010233 - phloem transport, GO:0055078 - sodium ion homeostasis, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048608 - reproductive structure development, GO:0006529 - asparagine biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000146 - seed length, TO:0000304 - seed thickness, TO:0000181 - seed weight, TO:0000328 - sucrose content, TO:0000653 - seed development trait, TO:0000734 - grain length, TO:0000622 - flower development trait, TO:0000455 - seed set percent, TO:0000345 - seed viability, TO:0000526 - sodium concentration, TO:0000513 - potassium concentration, TO:0000525 - sodium to potassium content ratio, TO:0000163 - auxin sensitivity, TO:0000474 - glume opening, TO:0002655 - starch grain size, TO:0000149 - seed width, TO:0000430 - germination rate, TO:0000382 - 1000-seed weight, TO:0000058 - herbicide sensitivity, TO:0000207 - plant height, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0001016 - relative chlorophyll content, TO:0000135 - leaf length, TO:0000447 - filled grain number, TO:0000636 - relative shoot dry weight, TO:0000346 - tiller number, TO:0000180 - spikelet fertility, TO:0000644 - relative root dry weight, TO:0000655 - leaf development trait, TO:0000391 - seed size, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000506 - nitrogen recycling, TO:0000396 - grain yield, TO:0000516 - relative root length, TO:0000696 - starch content, TO:0001034 - relative plant height, TO:0002673 - amino acid content	PO:0009047 - stem , PO:0025530 - reproductive shoot system development stage , PO:0007615 - flower development stage , PO:0009072 - plant ovary , PO:0025034 - leaf , PO:0001035 - G anther dehiscence stage , PO:0001004 - anther development stage , PO:0009066 - anther , PO:0001170 - seed development stage 
10003	ARF16	OsARF16, OsARF2, OsARF1	AUXIN RESPONSE FACTOR 16	auxin response factor-16, auxin response factor 16, auxin response factor-2, auxin response factor 2, auxin response factor-1, auxin response factor 1	AUXIN RESPONSE FACTOR 16		1	AB071300, Q5NB85. OsARF2 in Waller et al. 2002. OsARF1 in Shao et al. 2019, He et al. 2020, Maliket al. 2020, Zhang  et al. 2020. GO:1901698: response to nitrogen compound. TO:0020100: nitrate uptake. GO:1902025: nitrate import. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0236300	LOC_Os01g13520.1, LOC_Os01g13520.2				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0010167 - response to nitrate, GO:0060359 - response to ammonium ion		
10004	ARF3	OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20, ARF4, OsARF3lb, ARF3lb	AUXIN RESPONSE FACTOR 3	auxin response factor-3, auxin response factor 3, OsETTIN3, ETTIN 3, DLN repressor 20, DLN motif protein 20	AUXIN RESPONSE FACTOR 3	osarf3lb	1	Q5JMM1. an ortholog of Arabidopsis ETT. ARF4 in Maliket al. 2020. OsARF3lb in Gu et al. 2023. GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence. 	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os01g0753500	LOC_Os01g54990.1				GO:0003677 - DNA binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009408 - response to heat	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009010 - seed 
10005	ARF5	OsARF5	AUXIN RESPONSE FACTOR 5	auxin response factor-5, auxin response factor 5	AUXIN RESPONSE FACTOR 5	osarf5	2	Q6Z2W3. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. TO:0020100: nitrate uptake. GO:1902025: nitrate import. GO:1990110: callus formation.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os02g0141100	LOC_Os02g04810.1				GO:0009734 - auxin mediated signaling pathway, GO:0010167 - response to nitrate, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0050687 - negative regulation of defense response to virus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0060359 - response to ammonium ion, GO:0051607 - defense response to virus	TO:0000428 - callus induction, TO:0000148 - viral disease resistance	
10006	ARF7	OsARF7	AUXIN RESPONSE FACTOR 7	auxin response factor-7, auxin response factor 7	AUXIN RESPONSE FACTOR 7		2	Q6YVY0.	 Other	Os02g0557200	LOC_Os02g35140.1				GO:0010150 - leaf senescence, GO:0009629 - response to gravity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002693 - gravity response trait	
10007	ARF8	OsARF8	AUXIN RESPONSE FACTOR 8	auxin response factor-8, auxin response factor 8	AUXIN RESPONSE FACTOR 8		2	Q6K223. GO:1990110: callus formation.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0628600	LOC_Os02g41800.1, LOC_Os02g41800.2				GO:0009734 - auxin mediated signaling pathway, GO:0031667 - response to nutrient levels, GO:0007584 - response to nutrient, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation	TO:0000428 - callus induction, TO:0000480 - nutrient sensitivity, TO:0000102 - phosphorus sensitivity	
10008	ARF9	OsARF9	AUXIN RESPONSE FACTOR 9	auxin response factor-9, auxin response factor 9	AUXIN RESPONSE FACTOR 9		4	LOC_Os04g36054. Q0JCZ4.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0442000	LOC_Os04g36054.1				GO:0009734 - auxin mediated signaling pathway, GO:0009629 - response to gravity, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002693 - gravity response trait	
10009	ARF10	OsARF10	AUXIN RESPONSE FACTOR 10	auxin response factor-10, auxin response factor 10	AUXIN RESPONSE FACTOR 10		4	Q7XKK6.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0519700	LOC_Os04g43910.1				GO:0009734 - auxin mediated signaling pathway, GO:0009415 - response to water, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000237 - water stress trait	
10010	ARF13	OsARF13, OsARF12, ARF12	AUXIN RESPONSE FACTOR 13	auxin response factor-13, auxin response factor 13	AUXIN RESPONSE FACTOR 13		4	Q7XSS9. OsARF12 in Zhao et al. 2014, Li et al. 2021. GO:1990110: callus formation.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0690600	LOC_Os04g59430.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0009415 - response to water, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006350 - transcription	TO:0000428 - callus induction, TO:0000237 - water stress trait	
10011	ARF14	OsARF14, OsETT4, ETT4, DLN153, OsDLN153, OsARF3la, ARF3la	AUXIN RESPONSE FACTOR 14	auxin response factor-14, auxin response factor 14, OsETTIN4, DLN repressor 153, DLN motif protein 153	AUXIN RESPONSE FACTOR 14	osarf3la	5	Q0DGS1. a rice ortholog of Arabidopsis ETTIN. OsARF3la in Gu et al. 2023. GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0515400	LOC_Os05g43920.1				GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009734 - auxin mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0003677 - DNA binding, GO:0009408 - response to heat, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription	TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0025034 - leaf 
10012	ARF16	OsARF16	AUXIN RESPONSE FACTOR 16	auxin response factor-16, auxin response factor 16	AUXIN RESPONSE FACTOR 16	osarf16	6	A3B9A0. GO:1990110: callus formation.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0196700	LOC_Os06g09660.1				GO:0006350 - transcription, GO:0009734 - auxin mediated signaling pathway, GO:0010386 - lateral root primordium development, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0051607 - defense response to virus, GO:0009638 - phototropism, GO:0048366 - leaf development, GO:0009785 - blue light signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050688 - regulation of defense response to virus	TO:0000428 - callus induction, TO:0000148 - viral disease resistance	
10013	ARF17	OsARF17	AUXIN RESPONSE FACTOR 17	auxin response factor-17, auxin response factor 17	AUXIN RESPONSE FACTOR 17	osarf17, 17cas-2-1, 17cas-5-2	6	Q653U3. TO: 0000829: leaf lamina morphology trait. GO:2000012: regulation of auxin polar transport. GO:0140272: exogenous protein binding. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:2001008: positive regulation of cellulose biosynthetic process. TO:0020100: nitrate uptake. GO:1902025: nitrate import. TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Other	Os06g0677800	LOC_Os06g46410.1, LOC_Os06g46410.2				GO:0006350 - transcription, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0010600 - regulation of auxin biosynthetic process, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0060359 - response to ammonium ion, GO:0010167 - response to nitrate, GO:0050832 - defense response to fungus, GO:0009908 - flower development, GO:0009834 - secondary cell wall biogenesis, GO:0009808 - lignin metabolic process, GO:0030244 - cellulose biosynthetic process, GO:0051607 - defense response to virus, GO:0009733 - response to auxin stimulus, GO:0009630 - gravitropism, GO:0009926 - auxin polar transport, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway	TO:0000124 - flag leaf angle, TO:0002688 - leaf lamina joint bending, TO:0000567 - tiller angle, TO:0000731 - lignin content, TO:0000329 - tillering ability, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000148 - viral disease resistance, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle, TO:0002693 - gravity response trait, TO:0000346 - tiller number, TO:0000020 - black streak dwarf virus resistance, TO:0000396 - grain yield	PO:0020039 - leaf lamina , PO:0020103 - flag leaf 
10014	ARF20	OsARF20	AUXIN RESPONSE FACTOR 20	auxin response factor-20, auxin response factor 20	AUXIN RESPONSE FACTOR 20		7	A3BH85.	 Other	Os07g0183100	LOC_Os07g08520.1				GO:0006350 - transcription, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus		
10015	ARF22	OsARF22	AUXIN RESPONSE FACTOR 22	auxin response factor-22, auxin response factor 22	AUXIN RESPONSE FACTOR 22		10	Q9AV47.	 Other	Os10g0479900	LOC_Os10g33940.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0048366 - leaf development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0007389 - pattern specification process, GO:0051301 - cell division, GO:0048829 - root cap development, GO:0048589 - developmental growth, GO:0009734 - auxin mediated signaling pathway, GO:0048442 - sepal development, GO:0048441 - petal development, GO:0009738 - abscisic acid mediated signaling, GO:0009743 - response to carbohydrate stimulus, GO:0010154 - fruit development, GO:0003677 - DNA binding		
10016	ARF24	OsARF24	AUXIN RESPONSE FACTOR 24	auxin response factor-24, auxin response factor 24	AUXIN RESPONSE FACTOR 24		12	Q2QQX6. GO:0080181: lateral root branching. TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound. TO:0020100: nitrate uptake. GO:1902025: nitrate import.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Other	Os12g0479400	LOC_Os12g29520.3, LOC_Os12g29520.4, LOC_Os12g29520.5, LOC_Os12g29520.1, LOC_Os12g29520.2				GO:0010047 - fruit dehiscence, GO:0009911 - positive regulation of flower development, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0010150 - leaf senescence, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006350 - transcription, GO:0010227 - floral organ abscission, GO:0048481 - ovule development, GO:0009414 - response to water deprivation, GO:0010167 - response to nitrate, GO:0060359 - response to ammonium ion, GO:0009734 - auxin mediated signaling pathway, GO:0008285 - negative regulation of cell proliferation, GO:0009415 - response to water	TO:0000276 - drought tolerance, TO:0000043 - root anatomy and morphology trait, TO:0000237 - water stress trait	
10017	TSA	OsTSA, pOsTSA, TSbeta, TSA1, OsTSA1	TRYPTOPHAN SYNTHASE ALPHA-SUBUNIT	putative OsTSA, alpha-subunit of tryptophan synthase, tryptophan synthase alpha chain	TRYPTOPHAN SYNTHASE ALPHA-SUBUNIT		7	The properties of Os07g08430 are similar to ZmTSA. TSbeta in Nguyen et al. 2013. TSA1 in Qin et al. 2020.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0182100	LOC_Os07g08430.1				GO:0000162 - tryptophan biosynthetic process, GO:0009570 - chloroplast stroma, GO:0004834 - tryptophan synthase activity, GO:0051607 - defense response to virus, GO:0052544 - callose deposition in cell wall during defense response, GO:0009411 - response to UV, GO:0042742 - defense response to bacterium	TO:0000148 - viral disease resistance, TO:0000160 - UV light sensitivity	
10018	IGL	OsIGL, OsIgl	INDOLE-3-GLYCEROL PHOSPHATE LYASE	indole-3-glycerol phosphate lyase	INDOLE-3-GLYCEROL PHOSPHATE LYASE		3	The catalytic values of Os03g58300 are similar to those of ZmIGL and ZmBX1.  a benzoxazinoid biosynthetic gene.		Os03g0797400	LOC_Os03g58300.1				GO:0052544 - callose deposition in cell wall during defense response, GO:0052315 - phytoalexin biosynthetic process, GO:0000162 - tryptophan biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0004834 - tryptophan synthase activity, GO:0009570 - chloroplast stroma, GO:0042742 - defense response to bacterium		
10019	_		_	OsTSAlike	_		3			Os03g0797000	LOC_Os03g58260.1, LOC_Os03g58260.2				GO:0009570 - chloroplast stroma, GO:0000162 - tryptophan biosynthetic process, GO:0052544 - callose deposition in cell wall during defense response, GO:0042742 - defense response to bacterium, GO:0004834 - tryptophan synthase activity		
10020	ASP1	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsTPR2, OsREL2, REL2, OsTPL3, TPL3, OsTPL2, TPL2, ASP-LSL	ABERRANT SPIKELET AND PANICLE 1	Lissencephaly type-1-like 1, ABERRANT SPIKELET AND PANICLE1, TOPLESS-RELATED PROTEIN 2, TOPLESS 3, aberrant spikelet-long sterile lemma, ROMOSA ENHANCER LOCI2	_	oslis-l1-1, oslis-l1-2, asp1, asp1-1, asp1-2, asp1-3, asp1-4, asp1-5, asp1-fe, asp1-ko, asp1-10, tpl2-1, tpl2-2, asp1, asp1-7#18, asp1-7#25, asp1-8#6, asp1-8#3, asp-lsl	8	AB638269. Q0J7U6. ASP1 encodes a transcriptional co-repressor similar to Arabidopsis TOPLESS, and a loss-of-function mutant exhibited derepression of axillary bud growth as well as a disorganized panicle branching pattern, possibly due toa defect in meristem maintenance. GO:2000036: regulation of stem cell population maintenance. TO:0006064: rolled leaf. OsTPL2 in Fang  et al. 2021. PO:0030123: panicle inflorescence. TO:0020106: Indole-3-acetic acid content.	 Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os08g0162100	LOC_Os08g06480.1				GO:0010229 - inflorescence development, GO:0010072 - primary shoot apical meristem specification, GO:0003714 - transcription corepressor activity, GO:0010073 - meristem maintenance, GO:0005634 - nucleus, GO:0001558 - regulation of cell growth, GO:0019827 - stem cell maintenance, GO:0009734 - auxin mediated signaling pathway	TO:0000650 - lemma length, TO:0000621 - inflorescence development trait, TO:0002727 - sterile lemma width, TO:0020033 - glume length, TO:0020034 - glume width, TO:0000371 - yield trait, TO:0002675 - gibberellic acid content, TO:0002768 - spikelet length, TO:0000455 - seed set percent, TO:0002660 - cytokinin content, TO:0002672 - auxin content, TO:0000040 - panicle length, TO:0000345 - seed viability, TO:0000430 - germination rate, TO:0000145 - internode length, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000240 - sterile lemma length, TO:0000163 - auxin sensitivity, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000152 - panicle number, TO:0000447 - filled grain number, TO:0000050 - inflorescence branching	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009047 - stem 
10021	ALS1	OsALS1, OsABCB25, ABCB25	ALUMINUM SENSITIVE 1	ALUMINUM SENSITIVE 1, ABC transporter superfamily ABCB subgroup member 25	ABC TRANSPORTER B25	osals1, osals1-1, osals1-2, osals1-3	3	Q9FNU2. a half-size ABC transporter. GO:1904880: response to hydrogen sulfide.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0755100	LOC_Os03g54790.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0010044 - response to aluminum ion, GO:0015421 - oligopeptide-transporting ATPase activity, GO:0000325 - plant-type vacuole		
10023	CYP20-2	OsCYP20-2, OsCYP-11, OsNuCYP20-2	CYCLOPHILIN 20-2	cyclophilin 20-2, rice thylakoid lumenal cyclophilin OsCYP20-2, cyclophilin 11	CYCLOPHILIN 20-2	oscyp20-2, oscyp20-2t1	5	OsCYP-11 in Trivedi et al. 2013. D16053. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0000847: panicle inflorescence morphology trait.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape	Os05g0103200	LOC_Os05g01270.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0010275 - NAD(P)H dehydrogenase complex assembly, GO:0009409 - response to cold, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0000245 - spliceosome assembly, GO:0001558 - regulation of cell growth, GO:0006109 - regulation of carbohydrate metabolic process, GO:0005634 - nucleus, GO:0009533 - chloroplast stromal thylakoid, GO:0009826 - unidimensional cell growth, GO:0009507 - chloroplast, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0080050 - regulation of seed development, GO:0009535 - chloroplast thylakoid membrane, GO:0009543 - chloroplast thylakoid lumen	TO:0000303 - cold tolerance, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0002730 - grain shape, TO:0000605 - hydrogen peroxide content	
10024	FKBP12	OsFKBP12	FK506 BINDING PROTEIN 12	FK506 binding protein 12	FK506 BINDING PROTEIN 12		2	GO:1900425: negative regulation of defense response to bacterium. GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0760300	LOC_Os02g52290.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0009651 - response to salt stress, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0002832 - negative regulation of response to biotic stimulus, GO:0009628 - response to abiotic stimulus, GO:0006457 - protein folding, GO:0016020 - membrane	TO:0000326 - leaf color, TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	
10025	FKBP13 	OsFKBP13	FK506 BINDING PROTEIN 13	FK506 binding protein 13	FK506 BINDING PROTEIN 13		6		 Biochemical character	Os06g0663800	LOC_Os06g45340.1, LOC_Os06g45340.2, LOC_Os06g45340.3				GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0009507 - chloroplast, GO:0031977 - thylakoid lumen		
10026	FKBP15-1	OsFKBP15-1	FK506 BINDING PROTEIN 15-1	FK506 binding protein 15-1	FK506 BINDING PROTEIN 15-1		9		 Biochemical character	Os09g0501850	LOC_Os09g32526.1, LOC_Os09g32526.2				GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0005773 - vacuole, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10027	FKBP15-2	OsFKBP15-2	FK506 BINDING PROTEIN 15-2	FK506 binding protein 15-2	FK506 BINDING PROTEIN 15-2		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0915800	LOC_Os01g68710.1, LOC_Os01g68710.2, LOC_Os01g68710.3				GO:0006457 - protein folding, GO:0005528 - FK506 binding, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005773 - vacuole, GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
10028	FKBP16-1	OsFKBP16-1	FK506 BINDING PROTEIN 16-1	FK506 binding protein 16-1	FK506 BINDING PROTEIN 16-1		2		 Biochemical character	Os02g0199300	LOC_Os02g10590.1, LOC_Os02g10590.2				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0000412 - histone peptidyl-prolyl isomerization, GO:0009507 - chloroplast, GO:0005730 - nucleolus		
10029	FKBP16-2	OsFKBP16-2	FK506 BINDING PROTEIN 16-2	FK506 binding protein 16-2	FK506 BINDING PROTEIN 16-2		2		 Biochemical character	Os02g0751600	LOC_Os02g51570.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0009543 - chloroplast thylakoid lumen, GO:0009535 - chloroplast thylakoid membrane, GO:0016020 - membrane, GO:0005528 - FK506 binding		
10030	FKBP16-3	OsFKBP16-3	FK506 BINDING PROTEIN 16-3	FK506 binding protein 16-3	FK506 BINDING PROTEIN 16-3		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0541400	LOC_Os08g42850.1, LOC_Os08g42850.2, LOC_Os08g42850.3, LOC_Os08g42850.4				GO:0009408 - response to heat, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0031977 - thylakoid lumen, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
10031	FKBP16-4	OsFKBP16-4	FK506 BINDING PROTEIN 16-4	FK506 binding protein 16-4	FK506 BINDING PROTEIN 16-4		7		 Biochemical character	Os07g0188266	LOC_Os07g09040.1				GO:0009658 - chloroplast organization, GO:0009707 - chloroplast outer membrane		
10032	FKBP17-1	OsFKBP17-1	FK506 BINDING PROTEIN 17-1	FK506 binding protein 17-1	FK506 BINDING PROTEIN 17-1		2		 Biochemical character	Os02g0168700	LOC_Os02g07220.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0005528 - FK506 binding		
10033	FKBP17-2	OsFKBP17-2	FK506 BINDING PROTEIN 17-2	FK506 binding protein 17-2	FK506 BINDING PROTEIN 17-2		3		 Biochemical character	Os03g0708500	LOC_Os03g50080.1				GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0006457 - protein folding, GO:0009535 - chloroplast thylakoid membrane		
10034	FKBP18	OsFKBP18	FK506 BINDING PROTEIN 18	FK506 binding protein 18	FK506 BINDING PROTEIN 18		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0117600	LOC_Os02g02550.1				GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0016020 - membrane, GO:0006457 - protein folding, GO:0005528 - FK506 binding, GO:0009408 - response to heat, GO:0031977 - thylakoid lumen	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
10035	FKBP19	OsFKBP19	FK506 BINDING PROTEIN 19	FK506 binding protein 19	FK506 BINDING PROTEIN 19		7		 Biochemical character	Os07g0133700	LOC_Os07g04160.1, LOC_Os07g04160.2				GO:0031977 - thylakoid lumen, GO:0009535 - chloroplast thylakoid membrane		
10036	FKBP20-1A	OsFKBP20-1a, OsFKBP20	FK506 BINDING PROTEIN 20-1A	FK506 binding protein 20-1a, FK506-binding protein 20	FK506 BINDING PROTEIN 20-1A		5	AJ420710.	 Biochemical character	Os05g0458100	LOC_Os05g38370.3, LOC_Os05g38370.2, LOC_Os05g38370.1				GO:0006457 - protein folding, GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding		
10037	FKBP20-1B	OsFKBP20-1b	FK506 BINDING PROTEIN 20-1B	FK506 binding protein 20-1b	FK506 BINDING PROTEIN 20-1B	osfkbp20-1b	1	an immunophilin family protein. a spliceosome-associated protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0844300	LOC_Os01g62610.1				GO:0016020 - membrane, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0006457 - protein folding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0009737 - response to abscisic acid stimulus, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
10038	FKBP20-2	OsFKBP20-2	FK506 BINDING PROTEIN 20-2	FK506 binding protein 20-2	FK506 BINDING PROTEIN 20-2		7	PPIase in Fang et al. 2017.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0490400	LOC_Os07g30800.1				GO:0006457 - protein folding, GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009409 - response to cold, GO:0005528 - FK506 binding	TO:0000303 - cold tolerance	
10039	FKBP42A	OsFKBP42a, OsFKBP42b, FKBP42b	FK506 BINDING PROTEIN 42A	FK506 binding protein 42a	FK506 BINDING PROTEIN 42A		12	OsFKBP42b in Nie et al. 2024.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0145500	LOC_Os12g05090.1				GO:0005886 - plasma membrane, GO:0048366 - leaf development, GO:0006457 - protein folding, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005528 - FK506 binding, GO:0016020 - membrane, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
10040	FKBP42B	OsFKBP42b, OsFKBP42a, FKBP42a	FK506 BINDING PROTEIN 42B	FK506 binding protein 42b	FK506 BINDING PROTEIN 42B		11	OsFKBP42a in Nie et al. 2024.	 Biochemical character	Os11g0148300	LOC_Os11g05090.1				GO:0005886 - plasma membrane, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0048366 - leaf development, GO:0016020 - membrane		
10041	FKBP44	OsFKBP44, OsFKBP53b, FKBP53b	FK506 BINDING PROTEIN 44	FK506 binding protein 44	FK506 BINDING PROTEIN 44		9	OsFKBP53b in Nie et al. 2024.	 Biochemical character	Os09g0103900	LOC_Os09g01670.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10042	FKBP46	OsFKBP46, OsFKBP65c, FKBP65c	FK506 BINDING PROTEIN 46	FK506 binding protein 46	FK506 BINDING PROTEIN 46		1	OsFKBP65c in Nie et al. 2024.	 Biochemical character	Os01g0564300	LOC_Os01g38359.1, LOC_Os01g38359.2				GO:0009723 - response to ethylene stimulus, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity	TO:0000173 - ethylene sensitivity	
10043	FKBP53	OsFKBP53, OsFKBP53b, FKBP53b, OsFKBP43, FKBP43	FK506 BINDING PROTEIN 53	FK506 binding protein 53, FK506 binding protein 53b	FK506 BINDING PROTEIN 53		9	OsFKBP53b in Ahn et al. 2010. OsFKBP43 in Nie et al. 2024.	 Biochemical character	Os09g0293900	LOC_Os09g12270.1				GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0016020 - membrane, GO:0006457 - protein folding		
10044	FKBP57	OsFKBP57, OsFKBP65b, FKBP65b	FK506 BINDING PROTEIN 57	FK506 binding protein 57	FK506 BINDING PROTEIN 57		1	OsFKBP65b in Nie et al. 2024. GO:0061077: chaperone-mediated protein folding.	 Biochemical character	Os01g0562400	LOC_Os01g38180.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005737 - cytoplasm, GO:0016853 - isomerase activity, GO:0006457 - protein folding		
10045	BIP122	OsFKBP58, FKBP58, OsFKBP53a, FKBP53a, OsBIP122	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 121	FK506 binding protein 58, FK506 binding protein 53a, brassinosteroid receptor kinase (BRI1)-interacting protein 122, BRI1-interacting protein 122, brassinosteroid receptor kinase-interacting protein 122	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 121		4	AB118009. OsFKBP53a in Ahn et al. 2010, Nie et al. 2024.	 Biochemical character	Os04g0446500	LOC_Os04g36890.1, LOC_Os04g36890.2				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005730 - nucleolus, GO:0006457 - protein folding, GO:0016020 - membrane, GO:0000412 - histone peptidyl-prolyl isomerization, GO:0005528 - FK506 binding		
10046	FKBP59	OsFKBP59, OsFKBP15-3, FKBP15-3	FK506 BINDING PROTEIN 59	FK506 binding protein 59, FK506 binding protein 15-3	FK506 BINDING PROTEIN 59		9	OsFKBP15-3 in Nie et al. 2024.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0103800	LOC_Os09g01650.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
10047	FKBP62A	OsFKBP62a, FKBP62a, OsFKBP64, FKBP64	FK506 BINDING PROTEIN 62A	FK506 binding protein 62a, FK506 binding protein 64	FK506 BINDING PROTEIN 62A		8	OsFKBP64 in Cui et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0525600	LOC_Os08g41390.1, LOC_Os08g41390.2				GO:0006457 - protein folding, GO:0005528 - FK506 binding, GO:0005773 - vacuole, GO:0016020 - membrane, GO:0009408 - response to heat, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity	TO:0000259 - heat tolerance	
10048	FKBP62B	OsFKBP62b, OsFKBP65, FKBP62b, FKBP65	FK506 BINDING PROTEIN 62B	FK506 binding protein 62b, FK506 binding protein 65	FK506 BINDING PROTEIN 62B		4	AF140495. OsFKBP65 in Suzuki et al. 2014.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0352400	LOC_Os04g28420.1, LOC_Os04g28420.2				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009409 - response to cold, GO:0006457 - protein folding, GO:0005773 - vacuole, GO:0005528 - FK506 binding, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0016020 - membrane	TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
10049	FKBP75	OsFKBP62c, FKBP62c, OsFKBP75	FK506 BINDING PROTEIN 75	FK506 binding protein 62c, FK506 binding protein 75	FK506 BINDING PROTEIN 75		2	OsFKBP62c in Ahn et al. 2010, Nie et al. 2024.	 Biochemical character	Os02g0491400	LOC_Os02g28980.1				GO:0005528 - FK506 binding, GO:0005773 - vacuole, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0016020 - membrane		
10050	FKBP72	OsFKBP72	FK506 BINDING PROTEIN 72	FK506 binding protein 72	FK506 BINDING PROTEIN 72		3		 Biochemical character	Os03g0367000	LOC_Os03g25140.1				GO:0009735 - response to cytokinin stimulus, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005528 - FK506 binding, GO:0005783 - endoplasmic reticulum, GO:0009826 - unidimensional cell growth, GO:0030154 - cell differentiation, GO:0030010 - establishment of cell polarity, GO:0009880 - embryonic pattern specification, GO:0048527 - lateral root development, GO:0006457 - protein folding, GO:0016020 - membrane		
10051	FKBP73	OsFKBP73, OsFKBP65a, FKBP65a	FK506 BINDING PROTEIN 73	FK506 binding protein 73	FK506 BINDING PROTEIN 73		1	OsFKBP65a in Nie et al. 2024.	 Biochemical character	Os01g0563000	LOC_Os01g38229.1, LOC_Os01g38229.2, LOC_Os01g38229.3, LOC_Os01g38229.4				GO:0016020 - membrane, GO:0006457 - protein folding, GO:0005528 - FK506 binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10052	TIG	OsTIG	TRIGGER FACTOR-LIKE PROTEIN	trigger factor-like protein, trigger factor OsTIG	TRIGGER FACTOR-LIKE PROTEIN		6	GO:0044183: protein folding chaperone. GO:0061077: chaperone-mediated protein folding.	 Biochemical character	Os06g0308000	LOC_Os06g20320.1				GO:0043022 - ribosome binding, GO:0003729 - mRNA binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0051083 - 'de novo' cotranslational protein folding, GO:0009570 - chloroplast stroma, GO:0009941 - chloroplast envelope, GO:0015031 - protein transport, GO:0006457 - protein folding		
10053	CYP17	OsCYP17, OsCYP-4	CYCLOPHILIN 17	cyclophilin 17, cyclophilin 4	CYCLOPHILIN 17		2	LOC_Os02g02090.	 Biochemical character	Os02g0111200	LOC_Os02g02090.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization		
10054	CYP18-1	OsCYP18-1, OsCYP-12	CYCLOPHILIN 18-1	cyclophilin 18-1, cyclophilin 12	CYCLOPHILIN 18-1		6	OsCYP-12 in Trivedi et al. 2013. LOC_Os06g04000.	 Biochemical character	Os06g0130500	LOC_Os06g04000.1				GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization		
10055	CYP18-2	OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12	CYCLOPHILIN 18-2	cyclophilin 18-2, cyclophilin 23, SKIP interacting protein 12, SKIPa-interacting protein 12, SKIPa-interacting protein 12	CYCLOPHILIN 18-2		8	OsCYP-23 in Trivedi et al. 2013. LOC_Os08g44520 (Os08g0559400/Os08g0559501).  a homologue of human peptidyl-prolyl isomerase-like 1 (PPiL1). EU368702.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0559400	LOC_Os08g44520.1, LOC_Os08g44520.2, LOC_Os08g44520.3				GO:0006457 - protein folding, GO:0009414 - response to water deprivation, GO:0005856 - cytoskeleton, GO:0007049 - cell cycle, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
10056	CYP18-4	OsCYP18-4, OsCYP-26, OsCYP18-3	CYCLOPHILIN 18-4	cyclophilin 18-4, cyclophilin 26	CYCLOPHILIN 18-4		10	OsCYP-26 in Trivedi et al. 2013. OsCYP18-3 in Kumari et al. 2014. LOC_Os10g06630.	 Biochemical character	Os10g0154700	LOC_Os10g06630.1				GO:0005886 - plasma membrane, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006457 - protein folding, GO:0009507 - chloroplast, GO:0046686 - response to cadmium ion, GO:0048046 - apoplast, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10058	CYP19-3	OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b	CYCLOPHILIN 19-3	cyclophilin 19-3, cyclophilin 1, cyclophilin 25	CYCLOPHILIN 19-3		9	L29471. OsCYP-25 in Trivedi  et al. 2013. OsCYP19-2a and OsCYP19-2b in Kumari et al. 2014. LOC_Os09g39780.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0571400	LOC_Os09g39780.1, LOC_Os09g39780.2				GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0046686 - response to cadmium ion		
10059	CYP19-4	OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8	CYCLOPHILIN 19-4	cyclophilin 19-4, cyclophilin 16	CYCLOPHILIN 19-4		6	OsCYP-16 in Trivedi et al. 2013. OsCYP19-3 in Kumari et al. 2014. LOC_Os06g49470.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0708400	LOC_Os06g49470.1				GO:0005783 - endoplasmic reticulum, GO:0048364 - root development, GO:0005771 - multivesicular body, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005829 - cytosol, GO:0005795 - Golgi stack, GO:0009734 - auxin mediated signaling pathway, GO:0042542 - response to hydrogen peroxide, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0005886 - plasma membrane, GO:0006457 - protein folding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0048046 - apoplast	TO:0000276 - drought tolerance, TO:0000590 - grain weight, TO:0000152 - panicle number, TO:0000303 - cold tolerance, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0002657 - oxidative stress	
10060	CYP20-1	OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b	CYCLOPHILIN 20-1	cyclophilin 20-1, cyclophilin 17	CYCLOPHILIN 20-1		6	OsCYP-17 in Trivedi et al. 2013. LOC_Os06g49480.	 Biochemical character	Os06g0708500	LOC_Os06g49480.1, LOC_Os06g49480.2				GO:0005783 - endoplasmic reticulum, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0005771 - multivesicular body, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0048364 - root development, GO:0005795 - Golgi stack, GO:0006457 - protein folding		
10061	CYP20-3	OsCYP20-3, OsCYP-5	CYCLOPHILIN 20-3	cyclophilin 20-3, cyclophilin 5	CYCLOPHILIN 20-3		1	OsCYP-5 in Trivedi et al. 2013. LOC_Os01g18210.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0284700	LOC_Os01g18210.1				GO:0006457 - protein folding, GO:0042742 - defense response to bacterium, GO:0019344 - cysteine biosynthetic process, GO:0009535 - chloroplast thylakoid membrane, GO:0031977 - thylakoid lumen, GO:0009628 - response to abiotic stimulus, GO:0048046 - apoplast, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0009642 - response to light intensity, GO:0010555 - response to mannitol stimulus, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006979 - response to oxidative stress, GO:0022626 - cytosolic ribosome, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity	TO:0000315 - bacterial disease resistance, TO:0000168 - abiotic stress trait	
10062	CYP21-1	OsCYP21-1, OsCYP-24	CYCLOPHILIN 21-1	cyclophilin 21-1, cyclophilin 24	CYCLOPHILIN 21-1		9	OsCYP-24 in Trivedi et al. 2013. LOC_Os09g36670.	 Biochemical character	Os09g0537600	LOC_Os09g36670.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0005794 - Golgi apparatus		
10063	CYP21-4	OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c	CYCLOPHILIN 21-4	cyclophilin 21-4, cyclophilin 19	CYCLOPHILIN 21-4		7	OsCYP-19 in Trivedi et al. 2013. OsCYP21-2a, OsCYP21-2b and OsCYP21-2c in Kumari et al. 2014. LOC_Os07g29390.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character	Os07g0476500	LOC_Os07g29390.1, LOC_Os07g29390.2, LOC_Os07g29390.3				GO:0009651 - response to salt stress, GO:0005794 - Golgi apparatus, GO:0005886 - plasma membrane, GO:0006457 - protein folding, GO:0009737 - response to abscisic acid stimulus, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000371 - yield trait, TO:0002657 - oxidative stress, TO:0000143 - relative biomass, TO:0000181 - seed weight	
10064	CYP22	OsCYP22, OsCYP-10	CYCLOPHILIN 22	cyclophilin 22, cyclophilin 10	CYCLOPHILIN 22		3	OsCYP-10 in Trivedi et al. 2013. LOC_Os03g59700.	 Biochemical character	Os03g0811600	LOC_Os03g59700.1				GO:0005773 - vacuole, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005886 - plasma membrane, GO:0006457 - protein folding		
10065	CYP23	OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c	CYCLOPHILIN 23	cyclophilin 23, cyclophilin 28	CYCLOPHILIN 23		11	OsCYP-28 in Trivedi et al. 2013. LOC_Os11g38990.	 Biochemical character	Os11g0602900	LOC_Os11g38990.1, LOC_Os11g38990.2, LOC_Os11g38990.3				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006457 - protein folding		
10066	CYP26-2	OsCYP26-2, OsCYP-1, OsCYP26-1	CYCLOPHILIN 26-2	cyclophilin 26-2, cyclophilin 1	CYCLOPHILIN 26-2		1	OsCYP-1 in Trivedi et al. 2013. OsCYP26-1 in Kumari et al. 2014. LOC_Os01g02080.	 Biochemical character	Os01g0111100	LOC_Os01g02080.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006457 - protein folding, GO:0009507 - chloroplast		
10067	CYP28	OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d	CYCLOPHILIN 28	cyclophilin 28, cyclophilin 21	CYCLOPHILIN 28		8	OsCYP-21 in Trivedi et al. 2013. LOC_Os08g19610.	 Biochemical character	Os08g0292600	LOC_Os08g19610.1, LOC_Os08g19610.2, LOC_Os08g19610.3, LOC_Os08g19610.4				GO:0009507 - chloroplast, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding, GO:0031977 - thylakoid lumen		
10068	CYP37	OsCYP37, OsCYP37a, OsCYP37b	CYCLOPHILIN 37	cyclophilin 37	CYCLOPHILIN 37		7	LOC_Os07g37830.	 Biochemical character	Os07g0565600	LOC_Os07g37830.1, LOC_Os07g37830.2				GO:0000413 - protein peptidyl-prolyl isomerization, GO:0031977 - thylakoid lumen, GO:0009535 - chloroplast thylakoid membrane, GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity		
10069	CYP38	OsCYP38, OsCYP38a, OsCYP38b	CYCLOPHILIN 38	cyclophilin 38	CYCLOPHILIN 38		8	LOC_Os08g29370.	 Biochemical character	Os08g0382400	LOC_Os08g29370.1, LOC_Os08g29370.2				GO:0042742 - defense response to bacterium, GO:0031977 - thylakoid lumen, GO:0006457 - protein folding, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization		
10070	CYP40A	OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b	CYCLOPHILIN 40A	cyclophilin 40a, cyclophilin 13	CYCLOPHILIN 40A		6	OsCYP-13 in Trivedi et al. 2013. OsCYP40-1a and OsCYP40-1b in Kumari et al. 2014. LOC_Os06g11320.	 Biochemical character	Os06g0216800	LOC_Os06g11320.1, LOC_Os06g11320.2				GO:0006457 - protein folding, GO:0010050 - vegetative phase change, GO:0010582 - floral meristem determinacy, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005737 - cytoplasm		
10071	CYP40B	OsCYP40b, OsCYP-8, OsCYP40-2	CYCLOPHILIN 40B	cyclophilin 40b, cyclophilin 8	CYCLOPHILIN 40B		2	OsCYP-8 in Trivedi et al. 2013. OsCYP40-2 in Kumari et al. 2014. LOC_Os02g52360.	 Biochemical character	Os02g0761100	LOC_Os02g52360.1				GO:0010050 - vegetative phase change, GO:0010582 - floral meristem determinacy, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005737 - cytoplasm, GO:0006457 - protein folding		
10072	CYP57	OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b	CYCLOPHILIN 57	cyclophilin 57, cyclophilin 3	CYCLOPHILIN 57		1	OsCYP-3 in Trivedi et al. 2013. LOC_Os01g40050.	 Biochemical character	Os01g0582400	LOC_Os01g40050.1, LOC_Os01g40050.2				GO:0006457 - protein folding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization		
10073	CYP59A	OsCYP59a, OsCYP-14, OsCYP59-1	CYCLOPHILIN 59A	cyclophilin 59a, cyclophilin 14	CYCLOPHILIN 59A		6	OsCYP-14 in Trivedi et al. 2013. OsCYP59-1 in Kumari et al. 2014. LOC_Os06g45900.	 Biochemical character	Os06g0670400	LOC_Os06g45900.1				GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0006457 - protein folding, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization		
10074	CYP59B	OsCYP59b, OsCYP-15, OsCYP59-2	CYCLOPHILIN 59B	cyclophilin 59b, cyclophilin 15	CYCLOPHILIN 59B		6	OsCYP-15 in Trivedi et al. 2013. OsCYP59-2 in Kumari et al. 2014. LOC_Os06g45910.	 Biochemical character	Os06g0670500	LOC_Os06g45910.1				GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0003723 - RNA binding, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005634 - nucleus, GO:0006457 - protein folding		
10075	CYP63	OsCYP63, OsCYP-18	CYCLOPHILIN 63	cyclophilin 63, cyclophilin 18	CYCLOPHILIN 63		7	OsCYP-18 in Trivedi et al. 2013. LOC_Os07g08190.	 Biochemical character	Os07g0179200	LOC_Os07g08190.1						
10076	CYP65	OsCYP65, OsCYP-9	CYCLOPHILIN 65	cyclophilin 65, cyclophilin 9	CYCLOPHILIN 65		3	OsCYP-9 in Trivedi et al. 2013. LOC_Os03g10400.	 Biochemical character	Os03g0201100	LOC_Os03g10400.2				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0006457 - protein folding		
10077	CYP71	OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b	CYCLOPHILIN 71	cyclophilin 71, cyclophilin 22	CYCLOPHILIN 71		8	OsCYP-22 in Trivedi et al. 2013. LOC_Os08g44330.	 Biochemical character	Os08g0557500	LOC_Os08g44330.1, LOC_Os08g44330.2				GO:0048443 - stamen development, GO:0010082 - regulation of root meristem growth, GO:0010358 - leaf shaping, GO:0010305 - leaf vascular tissue pattern formation, GO:0031060 - regulation of histone methylation, GO:0009909 - regulation of flower development, GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0010338 - leaf formation, GO:0048440 - carpel development, GO:0009933 - meristem structural organization, GO:0006457 - protein folding, GO:0000413 - protein peptidyl-prolyl isomerization, GO:0048453 - sepal formation		
10078	CYP95	OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b	CYCLOPHILIN 95	cyclophilin 95, cyclophilin 6	CYCLOPHILIN 95		2	OsCYP-6 in Trivedi et al. 2013.	 Biochemical character		LOC_Os02g10970.3, LOC_Os02g10970.1						
10079	BZIP39	OsbZIP39, bZIP39, DLN138, OsDLN138	b-ZIP TRANSCRIPTION FACTOR 39	b-ZIP transcription factor 39, basic leucine zipper transcription factor 39, DLN repressor 138, DLN motif protein 138	b-ZIP TRANSCRIPTION FACTOR 39		5		 Tolerance and resistance - Stress tolerance,  Other	Os05g0411300	LOC_Os05g34050.1				GO:0006986 - response to unfolded protein, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
10080	O3	OsbZIP60, bZIP60	OPAQUE 3	b-ZIP transcription factor 60, OPAQUE3, OsbZIP60-like	b-ZIP TRANSCRIPTION FACTOR 60	o3, Osbzip60-like	7	bZIP60 is an ER stress sensor in rice, and a counterpart of mammalian ATF6. PO:0030123: panicle inflorescence. GO:0035437: maintenance of protein localization in endoplasmic reticulum. TO:0001109: grain color trait. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Taste,  Other,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Seed - Morphological traits - Grain shape	Os07g0644100	LOC_Os07g44950.1				GO:0051223 - regulation of protein transport, GO:0010581 - regulation of starch biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0043565 - sequence-specific DNA binding, GO:0019438 - aromatic compound biosynthetic process, GO:0005634 - nucleus, GO:0010431 - seed maturation, GO:0006986 - response to unfolded protein, GO:0048316 - seed development, GO:0042594 - response to starvation, GO:0009960 - endosperm development, GO:0070613 - regulation of protein processing, GO:0034976 - response to endoplasmic reticulum stress, GO:0009408 - response to heat, GO:0003700 - transcription factor activity	TO:0000196 - amylose content, TO:0000487 - endosperm color, TO:0000104 - floury endosperm, TO:0000696 - starch content, TO:0000598 - protein content, TO:0002653 - endosperm storage protein content, TO:0000109 - endosperm storage protein-2 content, TO:0000653 - seed development trait, TO:0000107 - endosperm storage protein-1 content, TO:0000259 - heat tolerance, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000087 - aroma, TO:0000351 - zinc sensitivity, TO:0000432 - temperature response trait	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0007633 - endosperm development stage , PO:0007632 - seed maturation stage 
10081	IRE1	OsIRE1, OsIre1	INOSITOL REQUIRING 1	endoplasmic reticulum (ER) stress sensor IRE1	_		7	rice homolog of yeast Ire1p. AB031396.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0471000	LOC_Os07g28820.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters, GO:0005524 - ATP binding, GO:0006986 - response to unfolded protein, GO:0006397 - mRNA processing, GO:0034976 - response to endoplasmic reticulum stress		
10082	BIP1	OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2	_	ER chaperone BiP1, Binding protein 1, binding protein, endosperm lumenal binding protein, endoplasmic reticulum (ER) chaperone BiP3, Polypeptide chain-binding protein, Mediator 37_2, ER luminal binding protein BiP, Binding immunoglobulin protein		osbip1	2	AF006825. D21113. high molecular weight heat shock protein (HMW HSP). classified as HSP70. BiP3 in Park et al. 2010, Lee & Back 2024. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Endosperm,  Biochemical character,  Seed - Physiological traits - Storage substances	Os02g0115900	LOC_Os02g02410.1				GO:0034975 - protein folding in endoplasmic reticulum, GO:0005618 - cell wall, GO:0010197 - polar nucleus fusion, GO:0009651 - response to salt stress, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0046686 - response to cadmium ion, GO:0005524 - ATP binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0045088 - regulation of innate immune response, GO:0009408 - response to heat, GO:0034976 - response to endoplasmic reticulum stress, GO:0006986 - response to unfolded protein, GO:0006458 - 'de novo' protein folding, GO:0005788 - endoplasmic reticulum lumen, GO:0005730 - nucleolus	TO:0000196 - amylose content, TO:0000104 - floury endosperm, TO:0000259 - heat tolerance, TO:0000266 - chalky endosperm, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
10083	BIP2	OsBiP2, Bip2	BINDING PROTEIN 2	ER chaperone BiP2, Binding protein 2	BINDING PROTEIN 2		3		 Biochemical character,  Character as QTL - Grain quality,  Seed - Physiological traits - Longevity,  Tolerance and resistance - Stress tolerance	Os03g0710500	LOC_Os03g50250.1				GO:0005524 - ATP binding, GO:0009270 - response to humidity, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000435 - seed longevity, TO:0000345 - seed viability, TO:0010001 - percent germination, TO:0000441 - humidity related trait, TO:0000250 - vigor related trait	
10084	BIP3	OsBiP3, BiP3	BINDING PROTEIN 3	ER chaperone BiP3, Binding protein 3	BINDING PROTEIN 3		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0367800	LOC_Os05g30480.1				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0010197 - polar nucleus fusion, GO:0009408 - response to heat, GO:0005618 - cell wall, GO:0009507 - chloroplast, GO:0005773 - vacuole, GO:0030433 - ER-associated protein catabolic process		
10085	BIP4	OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2	BINDING PROTEIN 4	ER chaperone BiP4, Binding protein 4, Mediator 37_5	BINDING PROTEIN 4		5	BiP2 in Zhang et al. 2016. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0428600	LOC_Os05g35400.1				GO:0005618 - cell wall, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0005773 - vacuole, GO:0030433 - ER-associated protein catabolic process, GO:0034976 - response to endoplasmic reticulum stress, GO:0009408 - response to heat, GO:0010197 - polar nucleus fusion, GO:0005524 - ATP binding		
10086	BIP5	OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7	BINDING PROTEIN 5	ER chaperone BiP5, Binding protein 5, Mediator 37_7	BINDING PROTEIN 5		8	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0197700	LOC_Os08g09770.1				GO:0005524 - ATP binding, GO:0034976 - response to endoplasmic reticulum stress, GO:0046686 - response to cadmium ion		
10087	SAR1D	OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1D	"SAR1B-like gene, secretion-associated Ras-superfamily protein 1, ARF-like protein 1c, \"secretion-associated, Ras-related protein1d\""	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1D		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0225000	LOC_Os06g12090.1				GO:0009737 - response to abscisic acid stimulus, GO:0006886 - intracellular protein transport, GO:0009507 - chloroplast, GO:0005794 - Golgi apparatus, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0016192 - vesicle-mediated transport, GO:0005783 - endoplasmic reticulum, GO:0005525 - GTP binding, GO:0009269 - response to desiccation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
10088	CNX	OsCNX, OsCNX1, CNX1	CALNEXIN	Calnexin	CALNEXIN		4	GQ121138.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0402100	LOC_Os04g32950.4, LOC_Os04g32950.3, LOC_Os04g32950.2, LOC_Os04g32950.1				GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0009408 - response to heat, GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0009609 - response to symbiotic bacterium, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0034976 - response to endoplasmic reticulum stress, GO:0005783 - endoplasmic reticulum, GO:0005773 - vacuole, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009505 - plant-type cell wall, GO:0006457 - protein folding	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
10089	ERDJ3B	OsDjB6, OsERdj3B, ERdj3B	ERDJ3 LIKE B	ERdj3B-like gene, ERDJ3 like, ERDJ3 like gene, DnaJ domain protein B6, ER-resident J-protein 3B	ERDJ3 LIKE B		5	cell death marker. a co-chaperone component of the HSP70 system.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0156500	LOC_Os05g06440.1				GO:0006457 - protein folding, GO:0034976 - response to endoplasmic reticulum stress, GO:0005788 - endoplasmic reticulum lumen, GO:0005886 - plasma membrane		
10090	_		_	SDF2-like gene	_		8		 Tolerance and resistance - Stress tolerance	Os08g0278900	LOC_Os08g17680.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum		
10091	FES1C	NEF, OsFes1C, Fes1C	FES1-LIKE C	Fes1-like gene, Fes1-like protein C	FES1-LIKE C		9	CB654132. co-chaperone.	 Biochemical character,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os09g0512700	LOC_Os09g33780.1				GO:0009651 - response to salt stress, GO:0000774 - adenyl-nucleotide exchange factor activity, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0034976 - response to endoplasmic reticulum stress, GO:0005789 - endoplasmic reticulum membrane, GO:0005488 - binding, GO:0009408 - response to heat	TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000590 - grain weight, TO:0000382 - 1000-seed weight, TO:0000449 - grain yield per plant, TO:0000259 - heat tolerance, TO:0000516 - relative root length, TO:0000357 - growth and development trait, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0009010 - seed , PO:0025034 - leaf , PO:0009047 - stem 
10092	BZIP1	OsbZIP01, bZIP01, OsbZIP1, OsRE1, RE1	b-ZIP TRANSCRIPTION FACTOR 1	b-ZIP transcription factor 01, regulator of Ehd1	b-ZIP TRANSCRIPTION FACTOR 1	Osre1	1	AtHY5 homolog in rice. GO:2000028: regulation of photoperiodism, flowering. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Other	Os01g0174000	LOC_Os01g07880.1				GO:0007623 - circadian rhythm, GO:0043565 - sequence-specific DNA binding, GO:0010224 - response to UV-B, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0000601 - UV-B light sensitivity, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0002616 - flowering time	PO:0025034 - leaf 
10093	BZIP2	OsbZIP02, OsbZIP2, OsSTA8	b-ZIP TRANSCRIPTION FACTOR 2	b-ZIP transcription factor 02	b-ZIP TRANSCRIPTION FACTOR 2		1	LOC_Os01g11350. a mature anther-preferentially expressed gene.	 Other,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0211800	LOC_Os01g11350.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		PO:0009066 - anther 
10094	BZIP3	OsbZIP03, OsbZIP3, OsHBP1b, HBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3	b-ZIP TRANSCRIPTION FACTOR 3	b-ZIP transcription factor 03, histone-gene binding protein 1b, Histone gene binding protein-1b, TGA transcription factor 5	b-ZIP TRANSCRIPTION FACTOR 3		1	KM096571. GO:0072593: reactive oxygen species metabolic process.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0279900	LOC_Os01g17260.2, LOC_Os01g17260.1				GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0016209 - antioxidant activity, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0000495 - chlorophyll content, TO:0000112 - disease resistance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000316 - photosynthetic ability, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	
10095	BZIP4	OsbZIP04, OsbZIP4	b-ZIP TRANSCRIPTION FACTOR 4	b-ZIP transcription factor 04	b-ZIP TRANSCRIPTION FACTOR 4		1		 Tolerance and resistance - Stress tolerance,  Other	Os01g0542700	LOC_Os01g36220.1				GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000432 - temperature response trait	
10096	BZIP6	OsbZIP06, OsbZIP6	b-ZIP TRANSCRIPTION FACTOR 6	b-ZIP transcription factor 06	b-ZIP TRANSCRIPTION FACTOR 6		1		 Other	Os01g0756200	LOC_Os01g55150.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10097	BZIP7	OsbZIP07, OsbZIP7	b-ZIP TRANSCRIPTION FACTOR 7	b-ZIP transcription factor 07	b-ZIP TRANSCRIPTION FACTOR 7		1	LOC_Os01g58760. XB21 interacting protein (XB21IP).	 Other	Os01g0801901	LOC_Os01g58760.1				GO:0003700 - transcription factor activity		
10098	BZIP8	OsbZIP08, OsbZIP8, OsTGA2, TGA2, OsTGA2/OsbZIP28	b-ZIP TRANSCRIPTION FACTOR 8	b-ZIP transcription factor 08, TGA transcription factor 2	b-ZIP TRANSCRIPTION FACTOR 8		1	OsTGA2/OsbZIP28 in Moon et al. 2018.	 Other,  Tolerance and resistance - Disease resistance	Os01g0808100	LOC_Os01g59350.2, LOC_Os01g59350.1				GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus	TO:0000175 - bacterial blight disease resistance	
10099	BZIP9	OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2	b-ZIP TRANSCRIPTION FACTOR 9	b-ZIP transcription factor 09, Hd3a BINDING REPRESSOR FACTOR2, Hd3a BINDING REPRESSOR FACTOR 2	b-ZIP TRANSCRIPTION FACTOR 9	hbf2	1	a floral repressor.	 Other,  Reproductive organ - Heading date	Os01g0813100	LOC_Os01g59760.1				GO:2000028 - regulation of photoperiodism, flowering, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000137 - days to heading, TO:0002616 - flowering time	
10101	BZIP12	OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2, OsbZIP12/OsABF1	b-ZIP TRANSCRIPTION FACTOR 12	b-ZIP transcription factor 12, ABA responsive element binding factor 1, ORGAN SPECIFIC ELEMENT 2	b-ZIP TRANSCRIPTION FACTOR 12	Osabf1-1, Osabf1-2, abf1	1	GQ904238. OsABI5 in Kim et al. 2023.	 Vegetative organ - Culm,  Other,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os01g0867300	LOC_Os01g64730.1, LOC_Os01g64730.2				GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009408 - response to heat, GO:0010336 - gibberellic acid homeostasis, GO:0009740 - gibberellic acid mediated signaling, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0010187 - negative regulation of seed germination	TO:0002675 - gibberellic acid content, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000430 - germination rate, TO:0000432 - temperature response trait, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage 
10102	BZIP13	OsbZIP13	b-ZIP TRANSCRIPTION FACTOR 13	b-ZIP transcription factor 13	b-ZIP TRANSCRIPTION FACTOR 13		2		 Other	Os02g0128200	LOC_Os02g03580.1, LOC_Os02g03580.2, LOC_Os02g03580.3				GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10103	BZIP14	OsbZIP14	b-ZIP TRANSCRIPTION FACTOR 14	b-ZIP transcription factor 14	b-ZIP TRANSCRIPTION FACTOR 14		2		 Tolerance and resistance - Stress tolerance,  Other	Os02g0132500	LOC_Os02g03960.1				GO:0003700 - transcription factor activity, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding	TO:0000259 - heat tolerance, TO:0001034 - relative plant height	
10104	RISBZ4	OsbZIP15	RICE SEED B-ZIPPER 4	b-ZIP transcription factor 15, rice seed b-Zipper 4	RICE SEED B-ZIPPER 4		2	AB053473.	 Other	Os02g0175100	LOC_Os02g07840.1, LOC_Os02g07840.2				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10105	BZIP16	OsbZIP16, OsSTA51	b-ZIP TRANSCRIPTION FACTOR 16	b-ZIP transcription factor 16, Basic leucine zipper transcription factor OsbZIP16	b-ZIP TRANSCRIPTION FACTOR 16		2	LOC_Os02g09830. CT835362. a mature anther-preferentially expressed gene.	 Other,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os02g0191600	LOC_Os02g09830.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		PO:0009066 - anther 
10106	BZIP17	OsbZIP17, OsTGA4, TGA4	b-ZIP TRANSCRIPTION FACTOR 17	b-ZIP transcription factor 17	b-ZIP TRANSCRIPTION FACTOR 17		2		 Tolerance and resistance - Insect resistance,  Other	Os02g0194900	LOC_Os02g10140.1, LOC_Os02g10150.1				GO:0003700 - transcription factor activity, GO:0002215 - defense response to nematode, GO:0043565 - sequence-specific DNA binding	TO:0000384 - nematode damage resistance	
10107	BZIP18	OsbZIP18	b-ZIP TRANSCRIPTION FACTOR 18	b-ZIP transcription factor 18	b-ZIP TRANSCRIPTION FACTOR 18	osbzip18, osbzip18-1, osbzip18-2	2	AtHY5 homolog in rice. regulated by osa-miR528-5p and novel13_mature, indirectly ( Liu et al. 2020). GO:1901698: response to nitrogen compound. GO:1905629: positive regulation of serotonin biosynthetic process.	 Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Culm	Os02g0203000	LOC_Os02g10860.1				GO:0009082 - branched chain family amino acid biosynthetic process, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0010224 - response to UV-B, GO:0043565 - sequence-specific DNA binding, GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0009099 - valine biosynthetic process, GO:0009098 - leucine biosynthetic process, GO:0009699 - phenylpropanoid biosynthetic process, GO:0030246 - carbohydrate binding, GO:0009411 - response to UV, GO:0003700 - transcription factor activity, GO:0042427 - serotonin biosynthetic process	TO:0000207 - plant height, TO:0000290 - flavonoid content, TO:0000605 - hydrogen peroxide content, TO:0000571 - shoot fresh weight, TO:0000326 - leaf color, TO:0000346 - tiller number, TO:0002673 - amino acid content, TO:0000401 - plant growth hormone sensitivity, TO:0000601 - UV-B light sensitivity	PO:0025034 - leaf 
10108	BZIP19	OsbZIP19	b-ZIP TRANSCRIPTION FACTOR 19	b-ZIP transcription factor 19	b-ZIP TRANSCRIPTION FACTOR 19		2		 Other,  Tolerance and resistance - Stress tolerance	Os02g0247100	LOC_Os02g14910.1				GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
10109	RITA1	OsbZIP20, bZIP20, RITA-1, RISBZ3	RICE TRANSCRIPTION ACTIVATOR 1	b-ZIP transcription factor 20, rice seed b-Zipper 3, rice transcription activator-1	RICE TRANSCRIPTION ACTIVATOR 1	bzip20	2	L34551. GO:2001250: positive regulation of ammonia assimilation cycle. GO:0098869: cellular oxidant detoxification. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Other,  Tolerance and resistance - Stress tolerance	Os02g0266800	LOC_Os02g16680.1, LOC_Os02g16680.2				GO:0019676 - ammonia assimilation cycle, GO:0060359 - response to ammonium ion, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0009738 - abscisic acid mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0048364 - root development	TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage 
10110	BZIP21	OsbZIP21	b-ZIP TRANSCRIPTION FACTOR 21	b-ZIP transcription factor 21	b-ZIP TRANSCRIPTION FACTOR 21		2		 Other	Os02g0538900	LOC_Os02g33560.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10111	BZIP22	OsbZIP22, OsbZIP43, bZIP43	b-ZIP TRANSCRIPTION FACTOR 22	b-ZIP transcription factor 22, bZIP transcription factor 43	b-ZIP TRANSCRIPTION FACTOR 22	OsbZIP43-M	2	OsbZIP43 in Zhang et al. 2024. GO:1900367: positive regulation of defense response to insect.	 Tolerance and resistance - Insect resistance,  Other	Os02g0728001	LOC_Os02g49560.1				GO:0003700 - transcription factor activity, GO:0002213 - defense response to insect, GO:0009625 - response to insect, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000424 - brown planthopper resistance	
10112	BZIP24	OsbZIP24, OsFD3, FD3, bZIP24/OsFD3	b-ZIP TRANSCRIPTION FACTOR 24	bZIP transcription factor 24, FD Transcription Factor 3	b-ZIP TRANSCRIPTION FACTOR 24	osfd3, osfd3-1	2		 Tolerance and resistance - Stress tolerance,  Other	Os02g0833600	LOC_Os02g58670.1, LOC_Os02g58670.2				GO:0009408 - response to heat, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000432 - temperature response trait	PO:0020148 - shoot apical meristem , PO:0025034 - leaf 
10113	BZIP25	OsbZIP25	b-ZIP TRANSCRIPTION FACTOR 25	bZIP transcription factor 25	b-ZIP TRANSCRIPTION FACTOR 25		3		 Other	Os03g0127500	LOC_Os03g03550.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10114	BZIP26	OsbZIP26	b-ZIP TRANSCRIPTION FACTOR 26	bZIP transcription factor 26	b-ZIP TRANSCRIPTION FACTOR 26		3		 Other	Os03g0239400	LOC_Os03g13614.1, LOC_Os03g13614.2, LOC_Os03g13614.3				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
10115	BZIP27	OsbZIP27	b-ZIP TRANSCRIPTION FACTOR 27	bZIP transcription factor 27	b-ZIP TRANSCRIPTION FACTOR 27		3		 Other	Os03g0306700	LOC_Os03g19370.1, LOC_Os03g19375.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10116	BZIP28	OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08	b-ZIP TRANSCRIPTION FACTOR 28	bZIP transcription factor 28, bZIP transcription factor 1	b-ZIP TRANSCRIPTION FACTOR 28		3	AY620414. OsTGA3/OsbZIP08 in Moon et al. 2018.	 Other,  Tolerance and resistance - Disease resistance	Os03g0318600	LOC_Os03g20310.4, LOC_Os03g20310.3, LOC_Os03g20310.2, LOC_Os03g20310.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0006952 - defense response, GO:0009627 - systemic acquired resistance, GO:0005634 - nucleus, GO:0009751 - response to salicylic acid stimulus, GO:0009410 - response to xenobiotic stimulus, GO:0003700 - transcription factor activity, GO:0005737 - cytoplasm, GO:0006351 - transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding	TO:0000401 - plant growth hormone sensitivity, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease	
10117	BZIP29	OsbZIP29	b-ZIP TRANSCRIPTION FACTOR 29	bZIP transcription factor 29	b-ZIP TRANSCRIPTION FACTOR 29		3		 Other	Os03g0322700	LOC_Os03g20650.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10118	BZIP31	OsbZIP31	b-ZIP TRANSCRIPTION FACTOR 31	b-ZIP transcription factor 31	b-ZIP TRANSCRIPTION FACTOR 31		3		 Other	Os03g0675400	LOC_Os03g47200.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10119	BZIP32	OsbZIP32	b-ZIP TRANSCRIPTION FACTOR 32	b-ZIP transcription factor 32	b-ZIP TRANSCRIPTION FACTOR 32		3		 Other	Os03g0770000	LOC_Os03g56010.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10121	BZIP34	OsbZIP34	b-ZIP TRANSCRIPTION FACTOR 34	b-ZIP transcription factor 34	b-ZIP TRANSCRIPTION FACTOR 34		3		 Other,  Reproductive organ	Os03g0809200	LOC_Os03g59460.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		PO:0000084 - plant sperm cell 
10122	BZIP35	OsbZIP35	b-ZIP TRANSCRIPTION FACTOR 35	b-ZIP transcription factor 35	b-ZIP TRANSCRIPTION FACTOR 35		4		 Other	Os04g0181300	LOC_Os04g10260.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10123	BZIP36	OsbZIP36	b-ZIP TRANSCRIPTION FACTOR 36	b-ZIP transcription factor 36	b-ZIP TRANSCRIPTION FACTOR 36		4		 Other	Os04g0495500	LOC_Os04g41820.1						
10124	BZIP37	OsTGAP1, TGAP1, OsbZIP37	b-ZIP TRANSCRIPTION FACTOR 37	TGA factor for phytoalexin production 1, bZIP transcription factor 37	b-ZIP TRANSCRIPTION FACTOR 37	ostgap1	4		 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os04g0637000	LOC_Os04g54474.1, LOC_Os04g54474.2, LOC_Os04g54474.3				GO:0010322 - regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009689 - induction of phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0046983 - protein dimerization activity, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016102 - diterpenoid biosynthetic process, GO:0052315 - phytoalexin biosynthetic process	TO:0002669 - diterpenoid phytoalexin content, TO:0000674 - phytochemical compound content, TO:0000172 - jasmonic acid sensitivity, TO:0000624 - allelopathic effect	
10125	BZIP40	OsbZIP40	b-ZIP TRANSCRIPTION FACTOR 40	b-ZIP transcription factor 40	b-ZIP TRANSCRIPTION FACTOR 40		5		 Other	Os05g0437700	LOC_Os05g36160.1, LOC_Os05g36160.2				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10126	BZIP41	OsbZIP41, TGA1	b-ZIP TRANSCRIPTION FACTOR 41	b-ZIP transcription factor 41, TGA transcription factor 1	b-ZIP TRANSCRIPTION FACTOR 41		5	LOC_Os05g37170.	 Other	Os05g0443900	LOC_Os05g37170.1, LOC_Os05g37170.2, LOC_Os05g37170.3, LOC_Os05g37170.4, LOC_Os05g37170.5, LOC_Os05g37170.6, LOC_Os05g37170.8				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10127	BZIP42	OsbZIP42, OsABF7, ABF7, HBF1, DLN149, OsDLN149	b-ZIP TRANSCRIPTION FACTOR 42	b-ZIP transcription factor 42, Hd3a BINDING REPRESSOR FACTOR1, Hd3a BINDING REPRESSOR FACTOR 1, DLN repressor 149, DLN motif protein 149	b-ZIP TRANSCRIPTION FACTOR 42	hbf1, hbf1-1	5	HQ858813. a floral repressor.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Other	Os05g0489700	LOC_Os05g41070.1				GO:0003700 - transcription factor activity, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:2000028 - regulation of photoperiodism, flowering, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
10128	BZIP43	OsbZIP43	b-ZIP TRANSCRIPTION FACTOR 43	b-ZIP transcription factor 43	b-ZIP TRANSCRIPTION FACTOR 43		5		 Other	Os05g0492000	LOC_Os05g41280.1						
10129	BZIP44	OsbZIP44	b-ZIP TRANSCRIPTION FACTOR 44	b-ZIP transcription factor 44	b-ZIP TRANSCRIPTION FACTOR 44		5		 Other	Os05g0495200	LOC_Os05g41540.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10130	BZIP45	OsbZIP45	b-ZIP TRANSCRIPTION FACTOR 45	b-ZIP transcription factor 45	b-ZIP TRANSCRIPTION FACTOR 45		5		 Other	Os05g0569300	LOC_Os05g49420.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10131	BZIP47	OsbZIP47	b-ZIP TRANSCRIPTION FACTOR 47	b-ZIP transcription factor 47	b-ZIP TRANSCRIPTION FACTOR 47		6	Gene Expression Omnibus (GEO) database under the accession number GSE196747. GO:0061458: reproductive system development. GO:0080186: developmental vegetative growth. GO:1902182: shoot apical meristem development. TO:0000784: inflorescence branch morphology trait. TO:0000847: panicle morphology trait. GO:0048510: regulation of timing of transition from vegetative to reproductive phase. TO:0001072: inflorescence axis length. TO:0000856: lodicule length. TO:1000022: anther morphology trait.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Other,  Vegetative organ - Leaf,  Vegetative organ - Shoot apical meristem(SAM),  Reproductive organ - Heading date	Os06g0265400	LOC_Os06g15480.1, LOC_Os06g15480.2				GO:0009908 - flower development, GO:0010073 - meristem maintenance, GO:0008285 - negative regulation of cell proliferation, GO:0048437 - floral organ development, GO:0043565 - sequence-specific DNA binding, GO:0009909 - regulation of flower development, GO:0003700 - transcription factor activity, GO:0048653 - anther development, GO:0080006 - internode patterning, GO:0048573 - photoperiodism, flowering, GO:0035266 - meristem growth, GO:0048507 - meristem development, GO:0048509 - regulation of meristem development, GO:0051775 - response to redox state, GO:0010229 - inflorescence development	TO:0006020 - shoot apical meristem development, TO:0000357 - growth and development trait, TO:0002688 - leaf lamina joint bending, TO:0000411 - seed length to width ratio, TO:0000207 - plant height, TO:0006021 - vegetative to reproductive phase transition trait, TO:0002609 - stamen length, TO:0006009 - lodicule anatomy and morphology trait, TO:0000137 - days to heading, TO:0006038 - floral organ number, TO:0000215 - stamen anatomy and morphology trait, TO:0000456 - spikelet number, TO:0000547 - primary branch number, TO:0006016 - meristem tissue development trait, TO:0006022 - floral organ development trait, TO:0006023 - lodicule development trait, TO:0000622 - flower development trait, TO:0000050 - inflorescence branching, TO:0000225 - stamen number	PO:0020003 - plant ovule , PO:0007615 - flower development stage , PO:0001049 - lodicule development stage , PO:0025585 - floral organ formation stage , PO:0020148 - shoot apical meristem , PO:0000230 - inflorescence meristem , PO:0006327 - spikelet meristem , PO:0000229 - flower meristem , PO:0009036 - lodicule , PO:0009029 - stamen , PO:0004703 - carpel primordium , PO:0007089 - stem elongation stage , PO:0001004 - anther development stage 
10132	BZIP48	OsbZIP48, OsHY5, HY5	b-ZIP TRANSCRIPTION FACTOR 48	b-ZIP transcription factor 48, ELONGATED HYPOCOTYL 5	b-ZIP TRANSCRIPTION FACTOR 48		6	an Arabidopsis HY5 (AtHY5) transcription factor ortholog.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits,  Other,  Coloration - Anthocyanin	Os06g0601500	LOC_Os06g39960.1				GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0003700 - transcription factor activity, GO:0032502 - developmental process, GO:0003677 - DNA binding, GO:0010224 - response to UV-B, GO:0005634 - nucleus	TO:0000207 - plant height, TO:0000601 - UV-B light sensitivity, TO:0000486 - seed color, TO:0000071 - anthocyanin content	PO:0007632 - seed maturation stage 
10133	BZIP49	OsbZIP49, OsbZIP50, bZIP50	b-ZIP TRANSCRIPTION FACTOR 49	b-ZIP transcription factor 49	b-ZIP TRANSCRIPTION FACTOR 49		6	OsbZIP50 in Wang et al. 2023.	 Tolerance and resistance - Insect resistance,  Other	Os06g0614100	LOC_Os06g41100.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
10134	BZIP51	OsbZIP51	b-ZIP TRANSCRIPTION FACTOR 51	b-ZIP transcription factor 51	b-ZIP TRANSCRIPTION FACTOR 51		6	LOC_Os06g42690	 Other		LOC_Os06g42690				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10135	RISBZ5	OsbZIP52, bZIP52	RICE SEED B-ZIPPER 5	b-ZIP transcription factor 52, rice seed b-Zipper 5	RICE SEED B-ZIPPER 5		6	AB053474.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0662200	LOC_Os06g45140.3, LOC_Os06g45140.1, LOC_Os06g45140.2				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000303 - cold tolerance, TO:0000432 - temperature response trait	PO:0025034 - leaf 
10136	BZIP53	OsbZIP53, APIP5	b-ZIP TRANSCRIPTION FACTOR 53	b-ZIP transcription factor 53, AvrPiz-t Interacting Protein 5	b-ZIP TRANSCRIPTION FACTOR 53		6	GO:0071294 cellular response to zinc ion. GO:1900150: regulation of defense response to fungus. LOC_Os06g50310.	 Tolerance and resistance - Disease resistance,  Other	Os06g0716800	LOC_Os06g50310.1				GO:0005737 - cytoplasm, GO:0003700 - transcription factor activity, GO:0031342 - negative regulation of cell killing, GO:0043565 - sequence-specific DNA binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
10137	BZIP54	OsbZIP54, OsFD6	b-ZIP TRANSCRIPTION FACTOR 54	b-ZIP transcription factor 54, FD Transcription Factor 6	b-ZIP TRANSCRIPTION FACTOR 54		6	a possible candidate CT (cold tolerance) gene on qCTS6 (QTL for cold tolerance at the seedling stage on chromosome 6).	 Other,  Tolerance and resistance - Stress tolerance	Os06g0719500	LOC_Os06g50480.1				GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000303 - cold tolerance	
10138	BZIP55	OsbZIP55, OsFD2	b-ZIP TRANSCRIPTION FACTOR 55	b-ZIP transcription factor 55, FD Transcription Factor 2	b-ZIP TRANSCRIPTION FACTOR 55		6		 Other,  Reproductive organ - Heading date	Os06g0720900	LOC_Os06g50600.1, LOC_Os06g50600.2				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10139	BZIP56	OsbZIP56, OsFD5	b-ZIP TRANSCRIPTION FACTOR 56	b-ZIP transcription factor 56, FD Transcription Factor 5	b-ZIP TRANSCRIPTION FACTOR 56		6		 Tolerance and resistance - Stress tolerance,  Other	Os06g0724000	LOC_Os06g50830.1, LOC_Os06g50830.2				GO:0043565 - sequence-specific DNA binding, GO:0009635 - response to herbicide, GO:0010188 - response to microbial phytotoxin, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000058 - herbicide sensitivity	
10140	BZIP57	OsbZIP57	b-ZIP TRANSCRIPTION FACTOR 57	b-ZIP transcription factor 57	b-ZIP TRANSCRIPTION FACTOR 57		7		 Other	Os07g0124300	LOC_Os07g03220.1						
10141	BZIP59	OsbZIP59, BIP125	b-ZIP TRANSCRIPTION FACTOR 59	b-ZIP transcription factor 59, brassinosteroid receptor kinase (BRI1)-interacting protein 125, BRI1-interacting protein 125, brassinosteroid receptor kinase-interacting protein 125	b-ZIP TRANSCRIPTION FACTOR 59		7	AB118012.	 Other	Os07g0209800	LOC_Os07g10890.1, LOC_Os07g10890.2				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10142	BZIP61	OsbZIP61	b-ZIP TRANSCRIPTION FACTOR 61	b-ZIP transcription factor 61	b-ZIP TRANSCRIPTION FACTOR 61		7		 Other	Os07g0679500	LOC_Os07g48180.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10143	BZIP62	OsbZIP62, OsABF8, OsEEL, EEL	b-ZIP TRANSCRIPTION FACTOR 62	b-ZIP transcription factor 62, ENHANCED EM LEVEL	b-ZIP TRANSCRIPTION FACTOR 62	osbzip62, bzip62	7	GO:1902584: positive regulation of response to water deprivation.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0686100	LOC_Os07g48660.1				GO:0051607 - defense response to virus, GO:0043565 - sequence-specific DNA binding, GO:0009738 - abscisic acid mediated signaling, GO:0003700 - transcription factor activity, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000148 - viral disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	
10144	BZIP63	OsbZIP63, rTGA2.1, OsrTGA2.1, OsbZIP20, bZIP20	b-ZIP TRANSCRIPTION FACTOR 63	b-ZIP transcription factor 63	b-ZIP TRANSCRIPTION FACTOR 63		7	HQ858807. OsbZIP20 in Wang et al. 2023.	 Tolerance and resistance - Insect resistance,  Other,  Tolerance and resistance - Disease resistance	Os07g0687700	LOC_Os07g48820.1, LOC_Os07g48820.2				GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0002215 - defense response to nematode, GO:0009410 - response to xenobiotic stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009627 - systemic acquired resistance, GO:0005737 - cytoplasm, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000255 - sheath blight disease resistance, TO:0000384 - nematode damage resistance	
10145	BZIP64	OsbZIP64, OsTGA4, TGA4	b-ZIP TRANSCRIPTION FACTOR 64	b-ZIP transcription factor 64	b-ZIP TRANSCRIPTION FACTOR 64		8		 Tolerance and resistance - Insect resistance,  Other	Os08g0176900	LOC_Os08g07970.1, LOC_Os08g07970.2, LOC_Os08g07970.3				GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
10146	BZIP65	OsbZIP65	b-ZIP TRANSCRIPTION FACTOR 65	b-ZIP transcription factor 65	b-ZIP TRANSCRIPTION FACTOR 65		8		 Other	Os08g0357300	LOC_Os08g26880.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10147	BZIP67	OsbZIP67	b-ZIP TRANSCRIPTION FACTOR 67	b-ZIP transcription factor 67	b-ZIP TRANSCRIPTION FACTOR 67		8		 Other	Os08g0487100	LOC_Os08g38020.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10148	BZIP68	OsbZIP68	b-ZIP TRANSCRIPTION FACTOR 68	b-ZIP transcription factor 68	b-ZIP TRANSCRIPTION FACTOR 68		8	an mRNA target of MSTRG.7147.1.	 Other	Os08g0543900	LOC_Os08g43090.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10149	BZIP69	OsbZIP69, OsFD4, FD4	b-ZIP TRANSCRIPTION FACTOR 69	b-ZIP transcription factor 69, FD Transcription Factor 4	b-ZIP TRANSCRIPTION FACTOR 69	osfd4, osfd4-1, osfd4-3	8		 Other,  Reproductive organ - Heading date	Os08g0549600	LOC_Os08g43600.1				GO:0010228 - vegetative to reproductive phase transition, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0020148 - shoot apical meristem , PO:0025588 - flower meristem transition stage 
10150	BZIP70	OsbZIP70	b-ZIP TRANSCRIPTION FACTOR 70	b-ZIP transcription factor 70	b-ZIP TRANSCRIPTION FACTOR 70		9		 Tolerance and resistance - Disease resistance,  Other	Os09g0280500	LOC_Os09g10840.1, LOC_Os09g10840.2				GO:0051607 - defense response to virus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0000148 - viral disease resistance	
10151	BZIP71	OsbZIP71, DLN221, OsDLN221, DLN222, OsDLN222	b-ZIP TRANSCRIPTION FACTOR 71	b-ZIP transcription factor 71, DLN repressor 221, DLN motif protein 221, DLN repressor 222, DLN motif protein 222	b-ZIP TRANSCRIPTION FACTOR 71		9	DLN221 (LOC_Os09g13570.1), DLN222 (LOC_Os09g13575.1).	 Tolerance and resistance - Stress tolerance,  Other	Os09g0306400	LOC_Os09g13575.1, LOC_Os09g13570.1				GO:0008643 - carbohydrate transport, GO:0009409 - response to cold, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress	TO:0000396 - grain yield, TO:0000421 - pollen fertility, TO:0000333 - sugar content, TO:0006001 - salt tolerance, TO:0002667 - abscisic acid content, TO:0000303 - cold tolerance, TO:0000455 - seed set percent, TO:0000605 - hydrogen peroxide content	PO:0009006 - shoot system , PO:0000003 - whole plant , PO:0009005 - root 
10152	BZIP72	OsbZIP72, OsAREB2, OsABF4, ABF4, Osbzip72, OsABI5, ABI5	b-ZIP TRANSCRIPTION FACTOR 72	b-ZIP transcription factor 72, AREB/ABF-family protein 2	b-ZIP TRANSCRIPTION FACTOR 72		9	OsABI5 in Sakuraba et al. 2016.	 Other,  Vegetative organ - Leaf,  Character as QTL - Germination,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os09g0456200	LOC_Os09g28310.1				GO:0010150 - leaf senescence, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0010029 - regulation of seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0009738 - abscisic acid mediated signaling	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage , PO:0007057 - 0 seed germination stage 
10153	TFX1	OsbZIP73, bZIP73, OsTFX1	BZIP TRANSCRIPTION FACTOR TFX1	b-ZIP transcription factor 73, bZIP transcription factor OsTFX1	BZIP TRANSCRIPTION FACTOR TFX1	bZIP73Jap, bZIP73Ind	9	NCBI Sequence Read Archive (SRA) under BioProject PRJNA450934. PO:0030123: panicle inflorescence. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os09g0474000	LOC_Os09g29820.1				GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0019809 - spermidine binding, GO:0003723 - RNA binding, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0043565 - sequence-specific DNA binding	TO:0000333 - sugar content, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000396 - grain yield, TO:0000455 - seed set percent, TO:0002667 - abscisic acid content	PO:0020103 - flag leaf 
10154	BZIP74	OsbZIP74, OsTGA10, TGA10	b-ZIP TRANSCRIPTION FACTOR 74	b-ZIP transcription factor 74, TGA factor 10, TGACGTCA cis-element-binding protein 10	b-ZIP TRANSCRIPTION FACTOR 74	ostga10	9	LOC_Os09g31390. a rice homolog of Arabidopsis TGA10.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other	Os09g0489500	LOC_Os09g31390.3, LOC_Os09g31390.2, LOC_Os09g31390.1				GO:0003700 - transcription factor activity, GO:0048658 - tapetal layer development, GO:0048443 - stamen development, GO:0009556 - microsporogenesis, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding	TO:0000437 - male sterility	
10155	BZIP76	OsbZIP76, DLN229, OsDLN229	b-ZIP TRANSCRIPTION FACTOR 76	b-ZIP transcription factor 76, DLN repressor 229, DLN motif protein 229	b-ZIP TRANSCRIPTION FACTOR 76	osbzip76, osbzip76-1, osbzip76-2	9		 Seed - Physiological traits - Storage substances,  Other,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape	Os09g0520400	LOC_Os09g34880.1				GO:0010342 - cellularization of endosperm, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009960 - endosperm development	TO:0000391 - seed size, TO:0000696 - starch content, TO:0000304 - seed thickness, TO:0000592 - 1000-dehulled grain weight, TO:0000196 - amylose content	PO:0007633 - endosperm development stage , PO:0009089 - endosperm 
10156	BZIP77	OsbZIP77, OsFD1, FD1	b-ZIP TRANSCRIPTION FACTOR 77	b-ZIP transcription factor 77, basic leucine zipper (bZIP) transcription factor FD1, FD Transcription Factor 1	b-ZIP TRANSCRIPTION FACTOR 77	osfd1, osfd1-1, osfd1-2	9	a rice FD homologue.	 Reproductive organ - Heading date,  Other	Os09g0540800	LOC_Os09g36910.1				GO:0010229 - inflorescence development, GO:0005634 - nucleus, GO:2000028 - regulation of photoperiodism, flowering, GO:0010228 - vegetative to reproductive phase transition, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0002616 - flowering time, TO:0000621 - inflorescence development trait, TO:0000137 - days to heading	PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0020148 - shoot apical meristem , PO:0025588 - flower meristem transition stage 
10157	BZIP78	OsbZIP78, CRPG135, OsCRPG135	b-ZIP TRANSCRIPTION FACTOR 78	b-ZIP transcription factor 78, collar region-preferential gene 135	b-ZIP TRANSCRIPTION FACTOR 78		10	one of five transcription factors downstream of LG1 (Jiang et al. 2023).	 Other	Os10g0531900	LOC_Os10g38820.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding		PO:0006012 - leaf collar 
10158	BZIP79	OsbZIP79	b-ZIP TRANSCRIPTION FACTOR 79	b-ZIP transcription factor 79	b-ZIP TRANSCRIPTION FACTOR 79	osbzip79, osbzip79-1, osbzip79-2	11	GO:1901698: response to nitrogen compound. GO:0141067: intracellular nitrogen homeostasis. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903314: regulation of nitrogen cycle metabolic process.	 Tolerance and resistance - Stress tolerance,  Other	Os11g0152700	LOC_Os11g05480.1				GO:0043565 - sequence-specific DNA binding, GO:0031667 - response to nutrient levels, GO:0006995 - cellular response to nitrogen starvation, GO:0003700 - transcription factor activity, GO:0042594 - response to starvation, GO:0019740 - nitrogen utilization, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0046345 - abscisic acid catabolic process, GO:0030912 - response to deep water	TO:0000605 - hydrogen peroxide content, TO:0000011 - nitrogen sensitivity, TO:0000524 - submergence tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0002667 - abscisic acid content	
10159	ZIP2A	OsbZIP80, OsZIP-2a	BASIC/LEUCINE ZIPPER FACTOR 2A	b-ZIP transcription factor 80, basic/leucine zipper protein 2a	BASIC/LEUCINE ZIPPER FACTOR 2A		11	U04296.	 Other	Os11g0154900	LOC_Os11g05640.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10160	BZIP81	OsbZIP81, OsbZIP81.1, OsbZIP81.2	b-ZIP TRANSCRIPTION FACTOR 81	b-ZIP transcription factor 81	b-ZIP TRANSCRIPTION FACTOR 81		11	A Homologue of Arabidopsis VIP1.	 Other,  Tolerance and resistance - Stress tolerance	Os11g0160500	LOC_Os11g06170.2, LOC_Os11g06170.1				GO:0009617 - response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding	TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content	
10161	BZIP82	OsbZIP82	b-ZIP TRANSCRIPTION FACTOR 82	b-ZIP transcription factor 82	b-ZIP TRANSCRIPTION FACTOR 82		11		 Other	Os11g0218000	LOC_Os11g11100.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10162	BZIP83	OsbZIP83, TGAL11, OsTGAL11, OsTGA2, TGA2	b-ZIP TRANSCRIPTION FACTOR 83	b-ZIP transcription factor 83, TGA-like protein 11	b-ZIP TRANSCRIPTION FACTOR 83		12	OsTGA2 in Wang et al. 2023.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Other	Os12g0152900	LOC_Os12g05680.1				GO:0002215 - defense response to nematode, GO:0043565 - sequence-specific DNA binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity	TO:0000384 - nematode damage resistance, TO:0000175 - bacterial blight disease resistance	
10163	RSG	OsbZIP84, BZIP84	REPRESSION OF SHOOT GROWTH	b-ZIP transcription factor 84, repression of shoot growth	b-ZIP TRANSCRIPTION FACTOR 84		12	A Homologue of Arabidopsis VIP1.	 Other	Os12g0162500	LOC_Os12g06520.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10164	BZIP85	OsbZIP85	b-ZIP TRANSCRIPTION FACTOR 85	b-ZIP transcription factor 85	b-ZIP TRANSCRIPTION FACTOR 85		12		 Other	Os12g0194600 	LOC_Os12g09250.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10165	ZIP1A	OsbZIP86, bZIP86, OsZIP-1a, ZIP-1a	BASIC/LEUCINE ZIPPER FACTOR 1A	b-ZIP transcription factor 86, basic/leucine zipper protein 1a	BASIC/LEUCINE ZIPPER FACTOR 1A		12	a homolog of EmBP-1. U04295. OsbZIP86 in Nijhawan et al. 2008, Ge et al. 2024.	 Other,  Tolerance and resistance - Stress tolerance	Os12g0233800	LOC_Os12g13170.1, LOC_Os12g13170.2, LOC_Os12g13170.3				GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity	TO:0006001 - salt tolerance	
10166	BZIP88	OsbZIP88	b-ZIP TRANSCRIPTION FACTOR 88	b-ZIP transcription factor 88	b-ZIP TRANSCRIPTION FACTOR 88		12		 Other	Os12g0601800	LOC_Os12g40920.1, LOC_Os12g40920.3, LOC_Os12g40920.4				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		
10167	BZIP89	OsbZIP89	b-ZIP TRANSCRIPTION FACTOR 89	b-ZIP transcription factor 89	b-ZIP TRANSCRIPTION FACTOR 89		12		 Other	Os12g0634500	LOC_Os12g43790.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10168	_	OsZIP-2b	_	basic/leucine zipper protein 2b	_			U04297.	 Other						GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
10169	_	OsVDAC4, OsVDAC5, VDAC5	_	voltage-dependent anion-selective channel 4, voltage-dependent anion channel 5	_		3	LOC_Os03g10510. OsVDAC5 in Xu et al. 2015.	 Biochemical character	Os03g0202200	LOC_Os03g10510.1, LOC_Os03g10510.2				GO:0046930 - pore complex, GO:0005741 - mitochondrial outer membrane, GO:0008308 - voltage-gated anion channel activity, GO:0015288 - porin activity		
10170	LEA2	OsLEA2, OsLEA4, LEA4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 2	late embryogenesis abundant protein 2, late embryogenesis abundant protein 4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 2		6	OsLEA4 in Jiang et al. 2023.	 Tolerance and resistance - Stress tolerance	Os06g0110200	LOC_Os06g02040.1				GO:0006995 - cellular response to nitrogen starvation, GO:0006970 - response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0009790 - embryonic development, GO:0042594 - response to starvation, GO:0031667 - response to nutrient levels	TO:0000401 - plant growth hormone sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000095 - osmotic response sensitivity	
10171	LEA1	OsLEA1, OsLEA2, LEA2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 1	late embryogenesis abundant protein 1	LATE EMBRYOGENESIS ABUNDANT PROTEIN 1		4	OsLEA2 in Yuan et al. 2021.	 Tolerance and resistance - Stress tolerance	Os04g0589800	LOC_Os04g49980.1				GO:0001666 - response to hypoxia, GO:0009738 - abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0034059 - response to anoxia, GO:0009790 - embryonic development	TO:0000095 - osmotic response sensitivity, TO:0000015 - oxygen sensitivity	
10172	LEA3	OsLEA3, OsEnS-84	LATE EMBRYOGENESIS ABUNDANT PROTEIN 3	late embryogenesis abundant protein 3, endosperm-specific gene 84	LATE EMBRYOGENESIS ABUNDANT PROTEIN 3		6		 Tolerance and resistance - Stress tolerance	Os06g0324400	LOC_Os06g21910.1				GO:0009738 - abscisic acid mediated signaling, GO:0009790 - embryonic development, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity	
10173	LEA4	OsLEA4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4	late embryogenesis abundant protein 4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4		8			Os08g0327700	LOC_Os08g23870.1				GO:0009790 - embryonic development, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
10174	LEA6	OsLEA6	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6	late embryogenesis abundant protein 6	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6		1		 Tolerance and resistance - Stress tolerance	Os01g0624400	LOC_Os01g43530.1				GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0009644 - response to high light intensity, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane		
10175	LEA7	OsLEA7, OsLEA7a, OsLEA7b, OsLEA7c	LATE EMBRYOGENESIS ABUNDANT PROTEIN 7	late embryogenesis abundant protein 7	LATE EMBRYOGENESIS ABUNDANT PROTEIN 7		3	LOC_Os03g62620. GO:2000024: regulation of leaf development. TO:0006064: rolled leaf. the essential genes responsible for creating the gamma-rl mutant (rolled-leaf mutant on chromosome 3) phenotypes.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits,  Vegetative organ - Leaf	Os03g0843300	LOC_Os03g62620.2, LOC_Os03g62620.3, LOC_Os03g62620.4				GO:0005886 - plasma membrane, GO:0080113 - regulation of seed growth, GO:0080112 - seed growth, GO:0046686 - response to cadmium ion, GO:0048366 - leaf development, GO:0009269 - response to desiccation	TO:0000180 - spikelet fertility, TO:0000655 - leaf development trait, TO:0000653 - seed development trait	
10176	LEA8	OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5	LATE EMBRYOGENESIS ABUNDANT PROTEIN 8	late embryogenesis abundant protein 8, late embryogenesis abundant protein 5	LATE EMBRYOGENESIS ABUNDANT PROTEIN 8		5	OsLEA5 in Huang et al. 2018, Lv et al. 2022.	 Tolerance and resistance - Stress tolerance	Os05g0584200	LOC_Os05g50710.1				GO:0009845 - seed germination, GO:0009611 - response to wounding, GO:0009644 - response to high light intensity, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0005886 - plasma membrane, GO:0009738 - abscisic acid mediated signaling, GO:0050832 - defense response to fungus	TO:0002667 - abscisic acid content, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
10177	LEA9	OsLEA9, OsLEA5, LEA5	LATE EMBRYOGENESIS ABUNDANT PROTEIN 9	late embryogenesis abundant protein 9	LATE EMBRYOGENESIS ABUNDANT PROTEIN 9		1	LOC_Os01g21250. BF889451. OsLEA5 in Srivastava et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0314800	LOC_Os01g21250.1				GO:0006950 - response to stress, GO:0050832 - defense response to fungus, GO:0009409 - response to cold	TO:0000074 - blast disease, TO:0000303 - cold tolerance	
10178	LEA10	OsLEA10	LATE EMBRYOGENESIS ABUNDANT PROTEIN 10	late embryogenesis abundant protein 10	LATE EMBRYOGENESIS ABUNDANT PROTEIN 10		2		 Tolerance and resistance - Stress tolerance	Os02g0564600	LOC_Os02g35650.1				GO:0006950 - response to stress		
10179	LEA11	OsLEA11	LATE EMBRYOGENESIS ABUNDANT PROTEIN 11	late embryogenesis abundant protein 11	LATE EMBRYOGENESIS ABUNDANT PROTEIN 11		3		 Tolerance and resistance - Stress tolerance	Os03g0400700	LOC_Os03g28260.1				GO:0006950 - response to stress		
10180	LEA12	OsLEA12	LATE EMBRYOGENESIS ABUNDANT PROTEIN 12	late embryogenesis abundant protein 12	LATE EMBRYOGENESIS ABUNDANT PROTEIN 12	lea12, lea12-1, lea12-2, LEA12-OR, LEA12-93-11	5	GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os05g0362600	LOC_Os05g29930.1				GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0009687 - abscisic acid metabolic process, GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0030104 - water homeostasis	TO:0000522 - stomatal conductance, TO:0000136 - relative water content, TO:0000095 - osmotic response sensitivity, TO:0000153 - relative yield, TO:0001018 - transpiration rate, TO:0000507 - osmotic adjustment capacity, TO:0002662 - leaf rolling tolerance, TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000571 - shoot fresh weight	PO:0025034 - leaf 
10181	LEA13	OsLEA13	LATE EMBRYOGENESIS ABUNDANT PROTEIN 13	late embryogenesis abundant protein 13	LATE EMBRYOGENESIS ABUNDANT PROTEIN 13		8		 Tolerance and resistance - Stress tolerance	Os08g0451300	LOC_Os08g34990.1				GO:0006950 - response to stress		
10182	LEA15	OsLEA15	LATE EMBRYOGENESIS ABUNDANT PROTEIN 15	late embryogenesis abundant protein 15	LATE EMBRYOGENESIS ABUNDANT PROTEIN 15		2			Os02g0250600	LOC_Os02g15250.1						
10183	LEA16	OsLEA16	LATE EMBRYOGENESIS ABUNDANT PROTEIN 16	late embryogenesis abundant protein 16	LATE EMBRYOGENESIS ABUNDANT PROTEIN 16		3	EF444536.	 Tolerance and resistance - Disease resistance	Os03g0168100	LOC_Os03g07180.3, LOC_Os03g07180.2, LOC_Os03g07180.1				GO:0009738 - abscisic acid mediated signaling		
10184	LEA17	OsLEA17, OsLEA3-2, LEA3-2, LEA1	LATE EMBRYOGENESIS ABUNDANT PROTEIN 17	late embryogenesis abundant protein 17	LATE EMBRYOGENESIS ABUNDANT PROTEIN 17		3	A3AHG5. JQ043381. OsLEA3-2 in Duan and Cai 2012, Xiong et al. 2018, Liu et al. 2021, Lv et al. 2022, Luo et al. 2022. LEA1 in Kim et al. 2018, Song et al. 2020, Pandey et al. 2021, Ma et al. 2023.	 Tolerance and resistance - Stress tolerance	Os03g0322900	LOC_Os03g20680.1				GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
10185	LEA18	OsLEA18	LATE EMBRYOGENESIS ABUNDANT PROTEIN 18	late embryogenesis abundant protein 18	LATE EMBRYOGENESIS ABUNDANT PROTEIN 18		4			Os04g0610600	LOC_Os04g52110.1				GO:0009738 - abscisic acid mediated signaling		
10186	LEA20	OsLEA20, OsLEA1, OsLEA1a	LATE EMBRYOGENESIS ABUNDANT PROTEIN 20	late embryogenesis abundant protein 20, Late embryogenesis-abundant 1, Late embryogenesis-abundant 1a	LATE EMBRYOGENESIS ABUNDANT PROTEIN 20		1	OsLEA1 in Lee and Huang 2013. OsLEA1a in Shih et al. 2010, Song et al. 2020.		Os01g0159600	LOC_Os01g06630.1				GO:0009738 - abscisic acid mediated signaling	TO:0000615 - abscisic acid sensitivity	PO:0005052 - plant callus , PO:0009009 - plant embryo 
10187	LEA22	OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45	LATE EMBRYOGENESIS ABUNDANT PROTEIN 24	late embryogenesis abundant protein 22, Responsive to abscisic acid 25, Dehydrin RAB25, Dehydrin1	_		1	P30287. X57327. an osmotic stress responsive dehydrin. OsRab16 in Xu et al. 2013, Liu et al. 2021. Dehydrin1 in Yuan et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0702500	LOC_Os01g50700.1				GO:0006950 - response to stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009415 - response to water	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
10188	LIP5	OsLEA24, LEA24, WSI724, OsWSI724, OsLIP5	LOW-TEMPERATURE-INDUCED PROTEIN 5	late embryogenesis abundant protein 24, water stress-induced 724, WATER STRESS INDUCIBLE PROTEIN 724, low-temperature-induced protein 5	LOW-TEMPERATURE-INDUCED PROTEIN 5		3	AB011368. D26538. dehydrin. XB21 interacting protein (XB21IP).	 Tolerance and resistance - Stress tolerance	Os03g0655400	LOC_Os03g45280.1				GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0046872 - metal ion binding	TO:0000303 - cold tolerance	
10189	LEA30	OsLEA30, OsEnS-43	LATE EMBRYOGENESIS ABUNDANT PROTEIN 30	late embryogenesis abundant protein 30, endosperm-specific gene 43	LATE EMBRYOGENESIS ABUNDANT PROTEIN 30		3			Os03g0159600	LOC_Os03g06360.1, LOC_Os03g06360.2						
10190	LEA31	OsLEA31	LATE EMBRYOGENESIS ABUNDANT PROTEIN 31	late embryogenesis abundant protein 31	LATE EMBRYOGENESIS ABUNDANT PROTEIN 31		3			Os03g0747400	LOC_Os03g53610.1						
10191	LEA32	OsLEA32, OsEnS-55	LATE EMBRYOGENESIS ABUNDANT PROTEIN 32	late embryogenesis abundant protein 32, endosperm-specific gene 55	LATE EMBRYOGENESIS ABUNDANT PROTEIN 32		3	LOC_Os03g53620.		Os03g0747500	LOC_Os03g53620.1						
10192	LEA33	OsLEA33, D34, OsEnS-85	LATE EMBRYOGENESIS ABUNDANT PROTEIN 33	late embryogenesis abundant protein 33, endosperm-specific gene 85	LATE EMBRYOGENESIS ABUNDANT PROTEIN 33		6	LOC_Os06g23350.		Os06g0341300	LOC_Os06g23350.1						
10193	LEA34	OsLEA34	LATE EMBRYOGENESIS ABUNDANT PROTEIN 34	late embryogenesis abundant protein 34	LATE EMBRYOGENESIS ABUNDANT PROTEIN 34		9			Os09g0463450	LOC_Os09g28860.1						
10194	Hb2	HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2	HEMOGLOBIN 2	non-symbiotic hemoglobin 2, Non-legume hemoglobin, Phytogb1.2, phytoglobin 1.2	HEMOGLOBIN 2		3	O04986. D25122, D22678, U76028, U76031. AF335503. TO:0020098: nitrate sensitivity. GO:0035864: response to potassium ion. GO:1903409: reactive oxygen species biosynthetic process.	 Reproductive organ - panicle,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0226200	LOC_Os03g12510.1				GO:0005886 - plasma membrane, GO:0010229 - inflorescence development, GO:0010167 - response to nitrate, GO:0015671 - oxygen transport, GO:0019825 - oxygen binding, GO:0020037 - heme binding, GO:0080033 - response to nitrite, GO:0005618 - cell wall, GO:0051592 - response to calcium ion, GO:0006970 - response to osmotic stress, GO:0005829 - cytosol	TO:0000609 - potassium content, TO:0000621 - inflorescence development trait, TO:0000008 - potassium sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000006 - calcium sensitivity, TO:0000480 - nutrient sensitivity	PO:0001083 - inflorescence development stage 
10195	ERF127	OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23, OsERF3, ERF3	ETHYLENE RESPONSE FACTOR 127	rice wax synthesis regulatory gene 3, wax synthesis regulator 3, ethylene response factor 127, APETALA2/ethylene-responsive element binding protein 23	ETHYLENE RESPONSE FACTOR 127		2	OsERF3 in Wang et al. 2021.	 Other	Os02g0797100	LOC_Os02g55380.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10196	ERF2	OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100	ETHYLENE RESPONSE FACTOR 2	rice wax synthesis regulatory gene 4, wax synthesis regulator 4, ethylene response factor 2, APETALA2/ethylene-responsive element binding protein 100, ETHYLENE-RESPONSE-FACTOR002	ETHYLENE RESPONSE FACTOR 2		6		 Other	Os06g0181700	LOC_Os06g08340.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009723 - response to ethylene stimulus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000173 - ethylene sensitivity	PO:0009005 - root 
10197	_	OsSWAP70A, SWAP70A	_		_		3	a rice homolog of human SWAP70. GO:0035556: intracellular signal transduction.		Os03g0666200	LOC_Os03g46340.1				GO:0004674 - protein serine/threonine kinase activity, GO:0018105 - peptidyl-serine phosphorylation, GO:0005622 - intracellular		
10198	_	OsSWAP70B, SWAP70B, SIP21	_	SKIP interacting protein 21, SKIPa-interacting protein 21, SKIPa-interacting protein 21	_		7	a rice homolog of human SWAP70. EU368711. LOC_Os07g04550. GO:0035556: intracellular signal transduction.		Os07g0138100	LOC_Os07g04550.1				GO:0018105 - peptidyl-serine phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005622 - intracellular		
10199	_	PBZ1	_	Probenazole1													
10200	_	OsIAS, OsOSC11, IAS, OSC11	_	isoarborinol synthase, oxidosqualene cyclase 11	_		11	LOC_Os11g35710.	 Biochemical character	Os11g0562100	LOC_Os11g35710.1				GO:0008152 - metabolic process, GO:0016866 - intramolecular transferase activity		
10201	_	OsOSC2, CAS1	_	oxidosqualene cyclase 2, cycloartenol synthase 1	_		2	AF169966. Q6Z2X6. LOC_Os02g04710.	 Biochemical character	Os02g0139700	LOC_Os02g04710.1, LOC_Os02g04710.2				GO:0016866 - intramolecular transferase activity, GO:0016871 - cycloartenol synthase activity, GO:0008152 - metabolic process		
10202	_	OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j	_	"oxidosqualene cyclase 7, \"2, 3-oxidosqualene cyclase 7\", parkeol synthase"	_		11	LOC_Os11g08569.	 Biochemical character	Os11g0189600	LOC_Os11g08569.1				GO:0008152 - metabolic process, GO:0016866 - intramolecular transferase activity		PO:0020104 - leaf sheath , PO:0020032 - plumule 
10203	_	OsOSC8	_	oxidosqualene cyclase 8, achilleol B synthase	_		11	LOC_Os11g18194.	 Biochemical character	Os11g0285000	LOC_Os11g18194.1				GO:0008152 - metabolic process, GO:0016866 - intramolecular transferase activity		
10204	LCT1	OsLCT1	LOW-AFFINITY CATION TRANSPORTER 1	Low-affinity cation transporter 1		OsLCT1-1, OsLCT1-2, OsLCT1-3	6	Cd transporter. TO:0006059: cadmium concentration. TO:0006044: magnesium concentration. TO:0006047: calcium concentration. TO:0006048: manganese concentration. TO:0000513: potassium concentration. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0579200	LOC_Os06g38120.1				GO:0046686 - response to cadmium ion, GO:0015691 - cadmium ion transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0010233 - phloem transport		PO:0000074 - parenchyma cell , PO:0005004 - shoot node , PO:0005020 - vascular bundle , PO:0005417 - phloem , PO:0020141 - stem node 
10205	_	gp1	_	Glycoprotein 1, vegetative cell wall protein gp1 precursor	_		7		 Tolerance and resistance - Stress tolerance	Os07g0142200	LOC_Os07g04930.1						
10206	_	OsLKR/SDH, OsLKR, OsSDH	_	lysine ketoglutarate reductase/saccharopine dehydrogenase, lysine ketoglutarate reductase, saccharopine dehydrogenase				AB574188	 Biochemical character						GO:0016491 - oxidoreductase activity, GO:0000166 - nucleotide binding		
10207	APC6	OsAPC6	ANAPHASE PROMOTING COMPLEX 6 	Oryza sativa anaphase-promoting complex 6, anaphase-promoting complex 6, anaphase promoting complex/Cyclosome subunit APC6	ANAPHASE PROMOTING COMPLEX 6 	osapc6	3	GO:0044784: metaphase/anaphase transition of cell cycle.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility	Os03g0236900/Os03g0236966	LOC_Os03g13370.1				GO:0000278 - mitotic cell cycle, GO:0032875 - regulation of DNA endoreduplication, GO:0010087 - phloem or xylem histogenesis, GO:0009553 - embryo sac development, GO:0043067 - regulation of programmed cell death, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process	TO:0000455 - seed set percent, TO:0000207 - plant height	
10208	GR1	OsGR1, OsGR2	GLUTATHIONE REDUCTASE 1	glutathione reductase 1	GLUTATHIONE REDUCTASE 1		3	rice chloroplastic GR. OsGR2 (cytosolic GR) in Li et al. 2014. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0163300	LOC_Os03g06740.1				GO:0005739 - mitochondrion, GO:0006749 - glutathione metabolic process, GO:0009570 - chloroplast stroma, GO:0032929 - negative regulation of superoxide release, GO:0045454 - cell redox homeostasis, GO:0050661 - NADP or NADPH binding, GO:0004362 - glutathione-disulfide reductase activity, GO:0050660 - FAD binding, GO:0005507 - copper ion binding, GO:0005524 - ATP binding		
10209	GR2	OsGR2, RGRC2, OsGR, OsGR3, OsRGRC2	GLUTATHIONE REDUCTASE 2	glutathione reductase 2, glutathione reductase	GLUTATHIONE REDUCTASE 2		2	P48642. D85751, AB009592, D78136. Cytosolic Glutathione Reductase, rice cytosolic GR. AY136760-AY136766. OsGR3 (chloroplastic isogene) in Li et al. 2014. KC611088-KC611096 (O. sativa and wild rice species, partial cds). AY136765.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0813500	LOC_Os02g56850.1, LOC_Os02g56850.2, LOC_Os02g56850.3, LOC_Os02g56850.4				GO:0009651 - response to salt stress, GO:0005777 - peroxisome, GO:0006749 - glutathione metabolic process, GO:0045454 - cell redox homeostasis, GO:0050660 - FAD binding, GO:0004362 - glutathione-disulfide reductase activity, GO:0009751 - response to salicylic acid stimulus, GO:0005829 - cytosol, GO:0070482 - response to oxygen levels, GO:0050661 - NADP or NADPH binding, GO:0009635 - response to herbicide, GO:0009414 - response to water deprivation, GO:0032928 - regulation of superoxide release, GO:0046685 - response to arsenic, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000058 - herbicide sensitivity, TO:0002657 - oxidative stress, TO:0000015 - oxygen sensitivity	PO:0009006 - shoot system 
10210	GR3	OsGR3	GLUTATHIONE REDUCTASE 3	glutathione reductase 3	GLUTATHIONE REDUCTASE 3	gr3	10	rice chloroplastic GR. AK108799 = Tc-OsGR3 (truncated OsGR3 sequence) (Wu et al. 2013).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0415300	LOC_Os10g28000.1				GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0009751 - response to salicylic acid stimulus, GO:0009570 - chloroplast stroma, GO:0009414 - response to water deprivation, GO:0043226 - organelle, GO:0005739 - mitochondrion, GO:0070482 - response to oxygen levels, GO:0042542 - response to hydrogen peroxide, GO:0050660 - FAD binding, GO:0032928 - regulation of superoxide release, GO:0006749 - glutathione metabolic process, GO:0004362 - glutathione-disulfide reductase activity, GO:0005524 - ATP binding, GO:0009635 - response to herbicide, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0045454 - cell redox homeostasis	TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance, TO:0000058 - herbicide sensitivity, TO:0002657 - oxidative stress, TO:0000429 - salt sensitivity	
10211	_	RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3, HyPRP1	_	root-specific RCc3, hybrid proline- or glycine-rich protein 1, Hybrid Proline-Rich Protein 1			2	L27208. Hydrophobic Protein from Soybean (HPS)-like protein.	 Vegetative organ - Root,  Biochemical character	Os02g0662000	LOC_Os02g44310.1				GO:0006869 - lipid transport		PO:0009005 - root 
10212	_	RCc2, RCg2, OsHyPRP13, HyP/GRP13, HyPRP13, OsRCg2, OsHyPRP35, HyPRP35	_	root-specific RCc2, hybrid proline- or glycine-rich protein 13, Hybrid Proline-Rich Protein 35			10	L27209, L27210. Hydrophobic Protein from Soybean (HPS)-like protein. OsHyPRP13 in Fujino et al. 2014. OsHyPRP35 in Kapoor et al. 2019.	 Vegetative organ - Root,  Biochemical character	Os10g0551800 	LOC_Os10g40430.1				GO:0006869 - lipid transport, GO:0006508 - proteolysis, GO:0008233 - peptidase activity		PO:0009005 - root 
10213	GLUB1A	GluB, GluB-1a, OsGluB-1a, GluB-1b, GluB1, OsGluB1	GLUTELIN B1A	Glutelin B isoform, Glutelin B-1a	GLUTELIN B1A		2	P14323. X15833. One of the GLUTELIN B isoforms. GluB-1b in Liu et al. 2023. GluB1 in Peng et al. 2024.	 Seed - Physiological traits - Storage substances	Os02g0249800	LOC_Os02g15178.1				GO:0045735 - nutrient reservoir activity		
10214	GLUC	GluC, OsEnS-36, EnS-36, GLU2.2, GluC-1, OsGluC-1	GLUTELIN C	Glutelin type-C, endosperm-specific gene 36, gluten 2.2	GLUTELIN C		2	EU264107 (promoter sequence). GLU2.2 in Xu et al. 2016.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os02g0453600	LOC_Os02g25640.2, LOC_Os02g25640.1				GO:0009415 - response to water, GO:0045735 - nutrient reservoir activity, GO:0009651 - response to salt stress, GO:0009791 - post-embryonic development, GO:0000003 - reproduction, GO:0048316 - seed development	TO:0000237 - water stress trait, TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage , PO:0009089 - endosperm , PO:0006220 - central endosperm , PO:0001170 - seed development stage 
10215	GLUD1	GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD	GLUTELIN D	Glutelin type-D, endosperm-specific gene 33	GLUTELIN D		2	AY429650.	 Seed - Physiological traits - Storage substances	Os02g0249000	LOC_Os02g15090.1				GO:0045735 - nutrient reservoir activity		PO:0006220 - central endosperm 
10216	_	Stt3a, STT3	_	oligosaccharyltransferase subunit Stt3a	_		4	co-chaperone.	 Biochemical character	Os04g0675500	LOC_Os04g57890.1				GO:0005783 - endoplasmic reticulum, GO:0006486 - protein amino acid glycosylation, GO:0005886 - plasma membrane, GO:0004576 - oligosaccharyl transferase activity		
10217	_	OsDER2, DER2	_	Derlin, DER1-like protein 2, Derlin 2	_		3	LOC_Os03g63520. an ERAD-related protein. Q851X7.		Os03g0852200	LOC_Os03g63520.1				GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane		
10218	HSR203J	Hsr203j, OsHsr203j	_		_		1	a cell death marker. a gene in rice zygotes with paternal allele-dependent expression.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0155000	LOC_Os01g06220.1				GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0010446 - response to alkalinity, GO:0016787 - hydrolase activity, GO:0046689 - response to mercury ion	TO:0000481 - alkali sensitivity, TO:0000034 - chromium sensitivity	
10219	CRT2	CRT, OsCRT, CRT-2, OsCRT-2, OsCRT2	CALRETICULIN 2	calreticulin	CALRETICULIN 2		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0832200	LOC_Os03g61670.1				GO:0005509 - calcium ion binding, GO:0009651 - response to salt stress, GO:0006457 - protein folding, GO:0046686 - response to cadmium ion, GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0055074 - calcium ion homeostasis, GO:0005783 - endoplasmic reticulum, GO:0006979 - response to oxidative stress, GO:0009507 - chloroplast		
10220	UPS	OsUPS, OsPUB41, PUB41, CMPG1, OsCMPG1	U-BOX CONTAINING E3 LIGASE INDUCED BY PHOSPHATE STARVATION	"U-box containing E3 ligase induced by phosphate
starvation, plant U-box-containing protein 41, U-box protein 41, immediate-early fungal elicitor protein CMPG1"	U-BOX CONTAINING E3 LIGASE INDUCED BY PHOSPHATE STARVATION	ospub41	3	a U-box protein. JN162673. class III PUB protein (U-box + GKL-box). EST: BQ907174, C27098, AU166815. GO:0140426: PAMP-triggered immunity signalling pathway. GEO-ID: GSE53940 (Whole genome expression profiling of rice leaves treated with Xanthomonas oryzae pv. oryzae secreted cell wall degrading lipase/esteraseA (LipA) at early time points, 30 min. and 120 min.) GO:0080148: negative regulation of response to water deprivation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0240600	LOC_Os03g13740.1				GO:0009409 - response to cold, GO:0004842 - ubiquitin-protein ligase activity, GO:0002237 - response to molecule of bacterial origin, GO:0050832 - defense response to fungus, GO:0002238 - response to molecule of fungal origin, GO:0052542 - callose deposition during defense response, GO:0005634 - nucleus, GO:0000151 - ubiquitin ligase complex, GO:0005829 - cytosol, GO:0050778 - positive regulation of immune response, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0001016 - relative chlorophyll content, TO:0000468 - leaf blast disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf 
10221	ILA1	OsILA1, OsACTPK4, ACTPK4, OsMAPKKK43, MAPKKK43	INCREASED LEAF ANGLE 1	increased leaf angle1, ACT domain containing protein kinase 4, MAPK kinase kinase 43	Raf-like 43	ila1, osmapkkk43	6	GO:0035556: intracellular signal transduction. Raf-like MAPKKK. TO:0000748: leaf morphology trait. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. 	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf	Os06g0724900	LOC_Os06g50920.1				GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0010224 - response to UV-B, GO:0004674 - protein serine/threonine kinase activity, GO:0009834 - secondary cell wall biogenesis	TO:0000206 - leaf angle, TO:0000601 - UV-B light sensitivity, TO:0000731 - lignin content, TO:0002688 - leaf lamina joint bending, TO:0000163 - auxin sensitivity, TO:0000124 - flag leaf angle	
10222	ILA1	IIP1	ILA1 INTERACTING PROTEIN 1	ILA1 interacting protein 1	_		1	an EPR (Eicosapenta peptide repeats) protein.		Os01g0621900	LOC_Os01g43370.1, LOC_Os01g43370.2, LOC_Os01g43372.1				GO:0005516 - calmodulin binding		
10223	IIP2	IIP2	ILA1 INTERACTING PROTEIN 2	ILA1 interacting protein 2	_		2			Os02g0259100	LOC_Os02g15880.1, LOC_Os02g15880.2, LOC_Os02g15880.3, LOC_Os02g15885.1						
10224	IIP3	OsIIP3	ILA1 INTERACTING PROTEIN 3	ILA1 interacting protein 3	_		2		 Vegetative organ - Leaf	Os02g0575700 	LOC_Os02g36590.1, LOC_Os02g36590.2, LOC_Os02g36590.3, LOC_Os02g36595.1					TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending	
10225	IIP4	IIP4	ILA1 INTERACTING PROTEIN 4	ILA1 interacting protein 4	_		4			Os04g0458200 	LOC_Os04g38520.1, LOC_Os04g38525.1						
10226	IIP5	IIP5	ILA1 INTERACTING PROTEIN 5	ILA1 interacting protein 5	_		4			Os04g0640900 	LOC_Os04g54830.1						
10227	IIP6	IIP6	ILA1 INTERACTING PROTEIN 6	ILA1 interacting protein 6	_		6	LOC_Os06g33180.		Os06g0523100							
10228	ACDR1	OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3	ACCELERATED CELL DEATH AND RESISTANCE 1	Oryza sativa accelerated cell death and resistance 1, accelerated cell death and resistance 1, enhanced disease resistance 1, EDR1 ortholog	_		3	AY167575. AF305911. a rice ortholog of Arabidopsis AtEDR1. putative Raf-like MAPKKK.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic	Os03g0160100	LOC_Os03g06410.1				GO:0046777 - protein amino acid autophosphorylation, GO:0000165 - MAPKKK cascade, GO:0009617 - response to bacterium, GO:0004709 - MAP kinase kinase kinase activity, GO:0000186 - activation of MAPKK activity, GO:0031349 - positive regulation of defense response, GO:0010942 - positive regulation of cell death, GO:0050832 - defense response to fungus, GO:0008219 - cell death, GO:0009620 - response to fungus, GO:0010364 - regulation of ethylene biosynthetic process, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus	TO:0002668 - jasmonic acid content, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	
10229	ERF108	OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2	ETHYLENE RESPONSE FACTOR 108	APETALA2, ethylene response factor 108, APETALA2/ethylene-responsive element binding protein 1, Rice Drought-responsive gene 2	ETHYLENE RESPONSE FACTOR 108		1	KC988330.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0131600	LOC_Os01g04020.1, LOC_Os01g04020.2				GO:0009751 - response to salicylic acid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	
10230	ERF72	OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2	ETHYLENE RESPONSE FACTOR 72	ethylene-responsive element-binding protein, ethylene response factor 72, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 1, benzothiadiazole-induced ethylene responsive transcriptional factor 1, BTH-induced ERF transcriptional factor 1, APETALA2/ethylene-responsive element binding protein 64, ethylene-responsive-element binding protein2			9	AY831392. AAV98700. DQ417199. AF364176.	 Tolerance and resistance - Disease resistance,  Seed,  Tolerance and resistance - Stress tolerance,  Other	Os09g0434500	LOC_Os09g26420.1, LOC_Os09g26420.2, LOC_Os09g26420.4, LOC_Os09g26420.5				GO:0003700 - transcription factor activity, GO:0009620 - response to fungus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait, TO:0000620 - embryo development trait, TO:0000074 - blast disease	
10231	SH11	OsJAmyb, JAmyb, OsJAMyb, OsMYB21, MYB21, Os2R_MYB91, 2R_MYB91, OgSH11, OsSH11	SEED SHATTERING 11	JA-regulated myb transcription factor, R2R3-MYB Transcription Factor 91, Seed Shattering 11	JA-REGULATED MYB TRANSCRIPTION FACTOR		11	AY026332. CB621845. R2R3-MYB. defense-related transcription factor control gene. a brassinosteroid-response gene. the candidate gene for qBBR11-4.  target of Osa-miR531. OgSH11 (a MYB transcription factor controlling seed shattering in O. glaberrima): Ogla0133M13.36, BBF89581.1. GO:0098542: defense response to other organism. GO:1900140: regulation of seedling development. GO:1900425: negative regulation of defense response to bacterium. TO:0000930: seed shattering. GO:1901141: regulation of lignin biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Shattering,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Other	Os11g0684000	LOC_Os11g45740.1				GO:0002213 - defense response to insect, GO:0016036 - cellular response to phosphate starvation, GO:0003677 - DNA binding, GO:0009628 - response to abiotic stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0009651 - response to salt stress, GO:0009809 - lignin biosynthetic process, GO:0042594 - response to starvation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000102 - phosphorus sensitivity, TO:0000129 - false smut disease resistance, TO:0000259 - heat tolerance, TO:0000168 - abiotic stress trait, TO:0000473 - grain shattering, TO:0000148 - viral disease resistance, TO:0000112 - disease resistance, TO:0000731 - lignin content, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0009039 - glume , PO:0009047 - stem , PO:0006503 - fruit abscission zone 
10232	_	OsDUF26, CRRSP, OsCRRSP55, CRRSP55	_	domain unknown function 26, Cys Rich Repeat Secretory Protein 55, cysteine-rich repeat secretory protein 55			3	LOC_Os03g16950. GO:0080167 response to karrikin. OsCRRSP55 in Chen et al. 2018.	 Tolerance and resistance	Os03g0277600	LOC_Os03g16950.1						
10233	MPK6	OsMPK6, OsDR6, DR6, OsMPK4, MPK4, OsMAPK4, MAPK4	MITOGEN-ACTIVATED PROTEIN KINASE 6	mitogen-activated protein kinase 6, MAP kinase 4	MITOGEN-ACTIVATED PROTEIN KINASE 6	osmpk6	10	EF174189. FJ621301. Q336X9. defense-responsive protein. OsMPK4 in Wang et al. 2014, Mohanta et al. 2015, Jalmi and Sinha 2016, Li et al. 2021, Jing et al. 2021, Yang et al. 2021, Wang et al. 2023. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.	 Seed,  Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Reproductive organ - panicle	Os10g0533600	LOC_Os10g38950.1				GO:0043069 - negative regulation of programmed cell death, GO:0002237 - response to molecule of bacterial origin, GO:0050832 - defense response to fungus, GO:0009734 - auxin mediated signaling pathway, GO:0006972 - hyperosmotic response, GO:0009651 - response to salt stress, GO:0043622 - cortical microtubule organization, GO:0009411 - response to UV, GO:0080026 - response to indolebutyric acid stimulus, GO:0002213 - defense response to insect, GO:0009620 - response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0000165 - MAPKKK cascade, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009861 - jasmonic acid and ethylene-dependent systemic resistance, GO:0004707 - MAP kinase activity, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0031348 - negative regulation of defense response, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0002238 - response to molecule of fungal origin, GO:0009416 - response to light stimulus, GO:0048316 - seed development, GO:0042539 - hypotonic salinity response	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000371 - yield trait, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent, TO:0000447 - filled grain number, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content, TO:0000075 - light sensitivity, TO:0000063 - mimic response, TO:0002668 - jasmonic acid content, TO:0000454 - stem borer resistance, TO:0000175 - bacterial blight disease resistance, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000160 - UV light sensitivity	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0001170 - seed development stage , PO:0025034 - leaf 
10234	CBP	OsCBP	CALCIUM-BINDING PROTEIN	calcium-binding protein	CALCIUM-BINDING PROTEIN		12		 Biochemical character	Os12g0137100	LOC_Os12g04240.1, LOC_Os12g04240.2				GO:0005509 - calcium ion binding		
10235	CAM	OsCaM	CALMODULIN	calmodulin	CALMODULIN		4		 Biochemical character	Os04g0444200	LOC_Os04g36660.1						
10236	CML4	OsCML4	CALMODULIN-LIKE PROTEIN 4	calmodulin-like 4	CALMODULIN-LIKE PROTEIN 4		3	Q84MN0. calmodulin-related calcium sensor protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0743500	LOC_Os03g53200.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005509 - calcium ion binding, GO:0019722 - calcium-mediated signaling, GO:0005634 - nucleus, GO:0005829 - cytosol	TO:0006001 - salt tolerance	
10237	REM1.5	OsREM1.5	REMORIN 1.5	remorin1, remorin 1, Remorin 1.5, remorin group 1 member 5	REMORIN 1.5	osrem1.5	4	OsREM1.5 in Raffaele et al. 2007 and Gui et al. 2014.	 Tolerance and resistance - Stress tolerance	Os04g0533300	LOC_Os04g45070.1				GO:0009414 - response to water deprivation, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
10238	MPK7	OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5	MITOGEN-ACTIVATED PROTEIN KINASE 7	mitogen-activated protein kinase 7	MITOGEN-ACTIVATED PROTEIN KINASE 7		5	BF889476. Q67C40. the candidate gene for qShB.5-4 (sheath blight resistance QTL 5-4). OsMAPK44 in Zhao et al. 2014. OsMAPK20-5 in Li et al. 2019.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Insect resistance	Os05g0566400	LOC_Os05g49140.3, LOC_Os05g49140.2, LOC_Os05g49140.1				GO:0007263 - nitric oxide mediated signal transduction, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004707 - MAP kinase activity, GO:0000165 - MAPKKK cascade, GO:0009873 - ethylene mediated signaling pathway, GO:0080027 - response to herbivore, GO:0002213 - defense response to insect, GO:0009814 - defense response, incompatible interaction, GO:0009611 - response to wounding, GO:0009723 - response to ethylene stimulus, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000424 - brown planthopper resistance, TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0000205 - white-backed planthopper resistance, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	
10239	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1	PATHOGENESIS-RELATED GENE 10A	Probenazole1, probezanole 1, probenazole-inducible 1, pathogenesis-related gene 10a, pathogenesis-related protein PR-10a, PR protein 10a, pathogenesis-related (PR) 10a, probenazole induced protein 1	PATHOGENESIS-RELATED PROTEIN 10A		12	D38170. a Probenazole-Inducible Gene. AF274850, AAF85972. D82066. BF889432. BGIOSGA037574 (indica). GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os12g0555500 	LOC_Os12g36880.1				GO:0002213 - defense response to insect, GO:0009609 - response to symbiotic bacterium, GO:0009620 - response to fungus, GO:0002221 - pattern recognition receptor signaling pathway, GO:0002215 - defense response to nematode, GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0052543 - callose deposition in cell wall, GO:0002237 - response to molecule of bacterial origin, GO:0016036 - cellular response to phosphate starvation, GO:0009610 - response to symbiotic fungus, GO:0009642 - response to light intensity, GO:0009413 - response to flooding, GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0006952 - defense response, GO:0009416 - response to light stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0010332 - response to gamma radiation, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000482 - chemical stress sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000249 - leaf senescence, TO:0000074 - blast disease, TO:0000460 - light intensity sensitivity, TO:0000114 - flooding related trait, TO:0000261 - insect damage resistance, TO:0000315 - bacterial disease resistance, TO:0006001 - salt tolerance, TO:0000384 - nematode damage resistance, TO:0000424 - brown planthopper resistance	PO:0009066 - anther , PO:0009074 - style , PO:0001054 - 4 leaf senescence stage , PO:0009009 - plant embryo 
10240	PR10B	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b, BetV, OsBetV	PATHOGENESIS-RELATED GENE 10B	pathogenesis-related gene 10b, pathogenesis-related protein PR-10b, PROBENAZOLE INDUCED PROTEIN1	PATHOGENESIS-RELATED PROTEIN 10B		12	AF274851, AAF85973. PBZ1 in Chen et al. 2013. PR10 in Rebecca et al. 2010.	 Tolerance and resistance - Disease resistance	Os12g0555200	LOC_Os12g36850.1				GO:0050832 - defense response to fungus, GO:0009609 - response to symbiotic bacterium, GO:0042742 - defense response to bacterium, GO:0009607 - response to biotic stimulus, GO:0006952 - defense response, GO:0042542 - response to hydrogen peroxide	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0000129 - false smut disease resistance	PO:0009005 - root 
10241	PR10C	RPR10c, PR-10c, PR10c	PATHOGENESIS-RELATED GENE 10C	pathogenesis-related gene 10c, pathogenesis-related protein PR-10c, pathogenesis-related protein PR-10c (PR10c) pseudogene			12	AF274852. a nonfunctional pseudogene.									
10242	FAD3	OsFAD3	OMEGA-3 FATTY ACID DESATURASE 3	w-3 fatty acid desaturase-3	OMEGA-3 FATTY ACID DESATURASE 3		11	D78505. GO:0080167 response to karrikin.	 Biochemical character	Os11g0104400	LOC_Os11g01340.2, LOC_Os11g01340.3, LOC_Os11g01340.4				GO:0042389 - omega-3 fatty acid desaturase activity, GO:0005783 - endoplasmic reticulum, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0009409 - response to cold, GO:0009941 - chloroplast envelope		
10243	MYB2	OsMyb2, OSMYB2	MYB TRANSCRIPTION FACTOR 2	myb transcription factor 2, transcription factor MYB2	MYB TRANSCRIPTION FACTOR 2		11	D88618.	 Other	Os11g0180900	LOC_Os11g07890.1				GO:0003677 - DNA binding		
10246	GL1D	OsMyb3, OSMYB3, MYB3, OsGL1D, OsMYB46, MYB46, Kala3, OsKala3, SMG3, OsSMG3, Os2R_MYB39, 2R_MYB39	GLABRA 1D	myb transcription factor 3, transcription factor MYB3, GLABRA1D, Key gene for black coloration by anthocyanin accumulation on chromosome 3, R2R3-MYB Transcription Factor 39		OsKala3-1xRU, OsKala3-2xRU, OsKala3-3xRU, OsKala3-4xRU, smg3	3	D88619. MW880722, MZ027587. R2R3-MYB. a rice homologs of the Arabidopsis R2R3 MYB transcription factor GLABRA1 (GL1). OsMYB46 in Abdullah-Zawawi et al. 2021. Kala3 was mapped between RM15008 and RM3400 on chromosome 3 and it may be OsMYB3 (Os03g0410000) (Maeda et al. 2014). PO:0030123: panicle inflorescence.  TO:0001109: grain color trait.	 Seed - Physiological traits,  Seed - Morphological traits,  Seed - Morphological traits - Grain shape,  Coloration - Anthocyanin,  Other,  Character as QTL - Grain quality,  Character as QTL - Yield and productivity	Os03g0410000	LOC_Os03g29614.1				GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0001558 - regulation of cell growth, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0042127 - regulation of cell proliferation, GO:0005634 - nucleus, GO:0010229 - inflorescence development	TO:0000707 - pericarp color, TO:0000162 - seed quality, TO:0000621 - inflorescence development trait, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000071 - anthocyanin content, TO:0000397 - grain size, TO:0000266 - chalky endosperm, TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000590 - grain weight	PO:0001083 - inflorescence development stage , PO:0007010 - whole plant fruit ripening stage , PO:0020104 - leaf sheath , PO:0008039 - stem base , PO:0001170 - seed development stage , PO:0009049 - inflorescence 
10247	_	OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C, OsMYB13, MYB13, Os2R_MYB11, 2R_MYB11	_	myb transcription factor 4, transcription factor MYB4, endosperm-specific gene 11, GLABRA1C, GLABRA 1C, R2R3-MYB Transcription Factor 11			1	D88620. AY459344. R2R3-MYB. a homologue of Arabidopsis transcription factor GL1. OsMYB13 in Abdullah-Zawawi et al. 2021.	 Other	Os01g0695900	LOC_Os01g50110.1				GO:0010468 - regulation of gene expression, GO:0010090 - trichome morphogenesis, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0048354 - mucilage biosynthetic process during seed coat development		
10248	CSA2	OsCSA2, MYB5, OsMyb5, OSMYB5, Os2R_MYB58, 2R_MYB58	CARBON STARVED ANTHER 2	myb transcription factor 5, transcription factor MYB5, R2R3-MYB Transcription Factor 58, carbon starved anther 2	MYB TRANSCRIPTION FACTOR 5	csa2, csa2-1, csa2-2, csa2Nip	5	D88621. AY459341. R2R3-MYB. TO:0020101: starch mobilization.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other	Os05g0490600	LOC_Os05g41166.1				GO:0048571 - long-day photoperiodism, GO:0009555 - pollen development, GO:0003677 - DNA binding, GO:0010233 - phloem transport, GO:0009908 - flower development, GO:0008643 - carbohydrate transport, GO:0048653 - anther development, GO:0003682 - chromatin binding	TO:0000696 - starch content, TO:0000300 - glucose content, TO:0000455 - seed set percent, TO:0000009 - genic male sterility-photoperiod sensitive, TO:0000622 - flower development trait, TO:0000229 - photoperiod sensitivity, TO:0000421 - pollen fertility, TO:0000340 - total soluble sugar content, TO:0006005 - fructose content	PO:0009071 - anther wall tapetum , PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0008013 - anther vascular system , PO:0025281 - pollen , PO:0007615 - flower development stage 
10249	MYB12	OsMyb12, Os2R_MYB89, 2R_MYB89	MYB TRANSCRIPTION FACTOR 12	myb transcription factor 12, transcription factor MYB12, R2R3-MYB Transcription Factor 89	MYB TRANSCRIPTION FACTOR 12		11	AF172282. AU032361, AU032360. R2R3-MYB. 	 Other,  Tolerance and resistance - Stress tolerance	Os11g0207600	LOC_Os11g10130.1				GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	
10250	MYB9	OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110, Os2R_MYB87, 2R_MYB87	MYB TRANSCRIPTION FACTOR 9	myb transcription factor 9, transcription factor MYB9, R2R3-MYB Transcription Factor 87	MYB TRANSCRIPTION FACTOR 9		10	Y11350. a MAMP-Responsive MYB Transcription Factor. R2R3-MYB. OsMyb8 in Baldoni et al. 2013. OsMYB110 in Hu et al. 2024. 	 Tolerance and resistance,  Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0478300	LOC_Os10g33810.1				GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0010224 - response to UV-B, GO:0003677 - DNA binding, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000675 - ferulic acid content, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000168 - abiotic stress trait, TO:0000179 - biotic stress trait, TO:0000290 - flavonoid content	
10251	MYB11	OsMyb11, Myb11, OsMYB60, MYB60, Os2R_MYB93, 2R_MYB93	TRANSCRIPTION FACTOR MYB11	myb transcription factor 11, transcription factor MYB11, R2R3-MYB Transcription Factor 93	TRANSCRIPTION FACTOR MYB11		12	Y11352. R2R3-MYB. AY459340, CB658779. photosynthetic electron transport related gene. OsMYB60 in Liu et al. 2018. GO:0080167 response to karrikin. TO:0000748: leaf morphology trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Other	Os12g0125000	LOC_Os12g03150.1				GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009965 - leaf morphogenesis, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0009416 - response to light stimulus, GO:0009617 - response to bacterium, GO:0046686 - response to cadmium ion, GO:0009723 - response to ethylene stimulus, GO:0009626 - plant-type hypersensitive response, GO:0009651 - response to salt stress, GO:0048366 - leaf development, GO:0010118 - stomatal movement	TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000075 - light sensitivity	PO:0001050 - leaf development stage 
10253	_	OsMyb7, Myb7, OsMYB102, MYB102, Os2R_MYB71, 2R_MYB71	_	myb transcription factor 7, transcription factor MYB7, R2R3-MYB Transcription Factor 71			7	Y11415. GO:1900055: regulation of leaf senescence. OsMYB102 in Abdullah-Zawawi et al. 2021.	 Vegetative organ - Leaf,  Other,  Coloration	Os07g0558100	LOC_Os07g37210.1				GO:0003677 - DNA binding, GO:0010150 - leaf senescence, GO:0009964 - negative regulation of flavonoid biosynthetic process	TO:0000249 - leaf senescence	
10254	MYB10	OsMyb10, Os2R_MYB82, 2R_MYB82	MYB TRANSCRIPTION FACTOR 10	myb transcription factor 10, transcription factor MYB10, R2R3-MYB Transcription Factor 82	MYB TRANSCRIPTION FACTOR 10		9	R2R3-MYB. Y11351.	 Other	Os09g0401000 	LOC_Os09g23620.1				GO:0009737 - response to abscisic acid stimulus, GO:0003677 - DNA binding		
10255	_	Osmyb7, myb7, OsMYB38, MYB38, Os2R_MYB28, 2R_MYB28	_	myb transcription factor 7, transcription factor MYB7, R2R3-MYB Transcription Factor 28			2	X96750, X96749, X89605. R2R3-MYB. OsMYB38 in  Lenka et al. 2020.	 Other	Os02g0641900	LOC_Os02g42870.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding		
10256	_	Lox2:Os:1, OsLOX9, LOX9, OsLOX8, LOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1, OsLOX1, OsLOX7, LOX7	_	lipoxygenase Lox2:Os:1, lipoxygenase 9, lipoxygenase 8, herbivore-induced type 2 13-lipoxygenase, RLL2 lipoxygenase	_		8	D14000. P38419. FJ607153. FJ660631 (japonica, OsLOX8), FJ660634 (indica, OsLOX9), AP008214 (25233664-25243037). BAA03102. OsLOX8 and OsLOX9 in Marla and Singh 2012. OsLOX2;1 in Kobayashi et al. 2016, Aung et al. 2018, Dong et al. 2021. OsLOX1 in Liu et al. 2019, Zhang et al. 2021, Kong et al. 2021, Zhang et al. 2022. LOX9 in Hu et al. 2021, Ma et al. 2020, Wang et al. 2021. OsLOX7 in Wang et al. 2023. LOX2 in  An et al. 2022, Tan et al. 2022. GO:1900366: negative regulation of defense response to insect. GO:0098542: defense response to other organism. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os08g0508800	LOC_Os08g39840.1				GO:0009620 - response to fungus, GO:0016165 - lipoxygenase activity, GO:0005506 - iron ion binding, GO:0042742 - defense response to bacterium, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0002213 - defense response to insect, GO:0016166 - phytoene dehydrogenase activity, GO:0031408 - oxylipin biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010106 - cellular response to iron ion starvation, GO:0009651 - response to salt stress, GO:0002215 - defense response to nematode, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0009507 - chloroplast, GO:0009611 - response to wounding, GO:0051607 - defense response to virus, GO:0050832 - defense response to fungus, GO:0051707 - response to other organism, GO:0009695 - jasmonic acid biosynthetic process	TO:0000384 - nematode damage resistance, TO:0000112 - disease resistance, TO:0000148 - viral disease resistance, TO:0006001 - salt tolerance, TO:0002668 - jasmonic acid content, TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000102 - phosphorus sensitivity, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000224 - iron sensitivity	
10257	XAT2	OsXAT2	XYLAN ARABINOSYLTRANSFERASE 2	xylan arabinosyltransferase2	XYLAN ARABINOSYLTRANSFERASE 2		2	Glycosyltransferase. LOC_Os02g22480.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0330200	LOC_Os02g22480.1, LOC_Os02g22480.2				GO:0045492 - xylan biosynthetic process, GO:0009827 - plant-type cell wall modification, GO:0019566 - arabinose metabolic process, GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0000068 - lodging incidence, TO:0002649 - pesticide sensitivity	
10258	XAT3	OsXAT3	XYLAN ARABINOSYLTRANSFERASE 3	xylan arabinosyltransferase3	XYLAN ARABINOSYLTRANSFERASE 3		3	Glycosyltransferase. LOC_Os03g37010.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0567600	LOC_Os03g37010.1, LOC_Os03g37010.2, LOC_Os03g37010.3				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0045492 - xylan biosynthetic process, GO:0019566 - arabinose metabolic process, GO:0008152 - metabolic process, GO:0009827 - plant-type cell wall modification	TO:0000068 - lodging incidence	
10259	_	OsPFA-DSP1, OsPP105	_	plant and fungi atypical dual-specificity phosphatase 1, Protein phosphatase 105	_		9	LOC_Os09g05020.	 Biochemical character	Os09g0135700	LOC_Os09g05020.1, LOC_Os09g05020.2				GO:0004725 - protein tyrosine phosphatase activity, GO:0035335 - peptidyl-tyrosine dephosphorylation		
10260	_	OsPFA-DSP2, OsPP39	_	plant and fungi atypical dual-specificity phosphatase 2, Protein phosphatase 39	_		2	LOC_Os02g53160.	 Biochemical character	Os02g0771400	LOC_Os02g53160.1				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity		
10261	_	OsPFA-DSP3	_	plant and fungi atypical dual-specificity phosphatase 3	_		6		 Biochemical character	Os06g0208700	LOC_Os06g10650.1				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity		
10262	_	OsPFA-DSP4, OsSTA281	_	plant and fungi atypical dual-specificity phosphatase 4	_		12	LOC_Os12g23190. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os12g0420300	LOC_Os12g23190.1				GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity		PO:0009066 - anther 
10263	_	OsIBR5, IBR5, OsPP85	_	MAPK phosphatase IBR5, indole-3-butyric acid-response 5, Protein phosphatase 85	_		6	LOC_Os06g20340.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0308100	LOC_Os06g20340.1, LOC_Os06g20340.2				GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0033549 - MAP kinase phosphatase activity, GO:0004725 - protein tyrosine phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0035335 - peptidyl-tyrosine dephosphorylation		
10264	_	OsDsPTP1, OsPP6	_	Protein phosphatase 6	_		1	LOC_Os01g29469.	 Biochemical character	Os01g0390900	LOC_Os01g29469.1				GO:0006470 - protein amino acid dephosphorylation, GO:0033549 - MAP kinase phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
10265	_	OsPHS1a, OsPP3	_	Protein phosphatase 3	_		1	LOC_Os01g20940.	 Biochemical character	Os01g0311500	LOC_Os01g20940.1				GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0043622 - cortical microtubule organization, GO:0004725 - protein tyrosine phosphatase activity, GO:0010468 - regulation of gene expression, GO:0010119 - regulation of stomatal movement		
10266	_	OsPHS1b, OsPP4, OsSTA14	_	Protein phosphatase 4	_		1	LOC_Os01g24470. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os01g0347000	LOC_Os01g24470.1, LOC_Os01g24470.2				GO:0004725 - protein tyrosine phosphatase activity, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0035335 - peptidyl-tyrosine dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding, GO:0033549 - MAP kinase phosphatase activity		PO:0009066 - anther 
10267	PUT2	OsPUT2, OsLAT7	POLYAMINE UPTAKE TRANSPORTER 2	PA uptake transporter 2, polyamine uptake transporter 2			12	LOC_Os12g39080.	 Biochemical character	Os12g0580400	LOC_Os12g39080.1				GO:0015606 - spermidine transmembrane transporter activity, GO:0015848 - spermidine transport, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
10268	CHLH	OsChlH, ChlH, OsCHLH	MAGNESIUM CHELATASE H SUBUNIT	magnesium chelatase subunit ChlH, magnesium chelatase porphyrin-binding subunit, Magnesium chelatase (MgCh) H subunit, Mg-chelatase H subunit	MAGNESIUM CHELATASE H SUBUNIT		3	Q10M50.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0323200	LOC_Os03g20700.2, LOC_Os03g20700.1				GO:0005739 - mitochondrion, GO:0051707 - response to other organism, GO:0000166 - nucleotide binding, GO:0015995 - chlorophyll biosynthetic process, GO:0016851 - magnesium chelatase activity, GO:0009507 - chloroplast		
10270	YGL98	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3, OsvWA12, vWA12	YELLOW-GREEN LEAF 98	magnesium chelatase subunit ChlD, magnesium-chelatase ChlD subunit, yellow-green leaf mutant 98, yellow-green leaf 7, magnesium-chelatase ChlD protein, MgCh D subunit, D-subunit of Mg-chelatase, Mg-chelatase D subunit, yellow green leaf3, yellow green leaf 3, von Willebrand factor A12		ygl98, Chlorina-1, Chl1, Ygl3, ygl3, ygl7	3	Q6ATS0. YGL3 in Tian et al. 2013. YGL7 in Deng et al. 2014.	 Coloration - Chlorophyll,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Coloration - Others,  Vegetative organ - Leaf	Os03g0811100	LOC_Os03g59640.1				GO:0009739 - response to gibberellin stimulus, GO:0015979 - photosynthesis, GO:0009658 - chloroplast organization, GO:0051707 - response to other organism, GO:0017111 - nucleoside-triphosphatase activity, GO:0009645 - response to low light intensity stimulus, GO:0009637 - response to blue light, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009725 - response to hormone stimulus, GO:0009507 - chloroplast, GO:0016851 - magnesium chelatase activity, GO:0015995 - chlorophyll biosynthetic process, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0002715 - chloroplast development trait, TO:0000166 - gibberellic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000460 - light intensity sensitivity, TO:0000326 - leaf color, TO:0000276 - drought tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000159 - blue light sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
10271	GRP162	OsGRP162	GLYCINE-RICH RNA-BINDING PROTEIN 162	Glycine-Rich Protein GRP162, a Gly-rich protein encoding 162 amino acids, glycine-rich protein 162	GLYCINE-RICH RNA-BINDING PROTEIN 162	grp162-1, grp162-2	12	a partner protein of RF5. AK289192. D22643, D15398. Embryonic abundant protein, glycine-rich. Glycine-rich RNA-binding protein. a subunit of the restoration of fertility complex (RFC). Gene Expression Omnibus (GEO) under accession number GSE222671. 	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration,  Tolerance and resistance - Stress tolerance	Os12g0632000	LOC_Os12g43600.1				GO:0003697 - single-stranded DNA binding, GO:0009651 - response to salt stress, GO:0010043 - response to zinc ion, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0045087 - innate immune response, GO:0007623 - circadian rhythm, GO:0010501 - RNA secondary structure unwinding, GO:0032508 - DNA duplex unwinding, GO:0009737 - response to abscisic acid stimulus, GO:0010119 - regulation of stomatal movement, GO:0005777 - peroxisome, GO:0005730 - nucleolus, GO:0009507 - chloroplast, GO:0006406 - mRNA export from nucleus, GO:0000166 - nucleotide binding, GO:0005618 - cell wall, GO:0010228 - vegetative to reproductive phase transition, GO:0009408 - response to heat, GO:0003690 - double-stranded DNA binding, GO:0005886 - plasma membrane	TO:0000259 - heat tolerance, TO:0000633 - relative total dry weight, TO:0000516 - relative root length, TO:0000497 - fertility restoration trait, TO:0001034 - relative plant height	
10272	RSS3		RICE SALT SENSITIVE 3	RICE SALT SENSITIVE3		rss3	11	Loss of function of this gene results in impaired root growth under salinity conditions. AB753860. GO:2000280: regulation of root development. LOC_Os11g25920.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os11g0446000	LOC_Os11g25920.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009826 - unidimensional cell growth, GO:0048364 - root development	TO:0006001 - salt tolerance, TO:0000227 - root length, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage , PO:0000025 - root tip 
10273	RSS1		RICE SALT SENSITIVE 1			rss1-1, rss1-2, rss1-3	2	Loss of function of this gene results in extreme dwarf and short-root phenotype under high-salt, but not normal growth conditions. Oryza sativa cv. Nipponbare. Tos17 insertional line (Miyao et al., 2003. The Plant Cell 15:1771-1780). ND1004(rss1-1), NC8328(rss1-2), H0851(rss1-3). LOC_Os02g39390.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Root	Os02g0606700	LOC_Os02g39390.1, LOC_Os02g39390.2				GO:0009651 - response to salt stress	TO:0000227 - root length, TO:0006001 - salt tolerance, TO:0000207 - plant height	
10274	TOM1	OsTOM1, ZIFL4, OsZIFL4	TRANSPORTER OF MUGINEIC ACID 1	Transporter of mugineic acids 1, zinc-induced facilitator-like 4	TRANSPORTER OF MUGINEIC ACID 1		11	Efflux transporter of phytosiderophore. MAs (mugineic acid family phytosiderophores) efflux transporter. GO:0080167:response to karrikin. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0134900	LOC_Os11g04020.1				GO:0055085 - transmembrane transport, GO:0042594 - response to starvation, GO:0010040 - response to iron(II) ion, GO:0010106 - cellular response to iron ion starvation, GO:0010043 - response to zinc ion, GO:0009705 - plant-type vacuole membrane, GO:0009624 - response to nematode, GO:0016021 - integral to membrane, GO:0055069 - zinc ion homeostasis	TO:0000224 - iron sensitivity	PO:0009005 - root 
10276	ENA1	OsENA1	EFFLUX TRANSPORTER OF NICOTIANAMINE 1	Efflux transporter of nicotianamine 1			11	Efflux transporter of nicotianamine. NA (nicotianamine) efflux transporter.	 Biochemical character	Os11g0151500	LOC_Os11g05390.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0005215 - transporter activity		
10277	GRF2	OsGRF2	GROWTH-REGULATING FACTOR 2	growth-regulating factor2	GROWTH-REGULATING FACTOR 2		6	BK004857. Q6AWY7.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0204800	LOC_Os06g10310.1				GO:0050832 - defense response to fungus, GO:0016563 - transcription activator activity, GO:0005524 - ATP binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009739 - response to gibberellin stimulus, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity	PO:0009009 - plant embryo , PO:0000037 - shoot apex , PO:0025034 - leaf 
10278	GRF3	OsGRF3	GROWTH-REGULATING FACTOR 3	growth-regulating factor3	GROWTH-REGULATING FACTOR 3		4	BK004858, AU182732, AU086039, D40475. Q6AWY6.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os04g0600900	LOC_Os04g51190.3, LOC_Os04g51190.2, LOC_Os04g51190.1				GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0005524 - ATP binding, GO:0009739 - response to gibberellin stimulus, GO:0016563 - transcription activator activity, GO:0050832 - defense response to fungus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	TO:0000207 - plant height, TO:0000259 - heat tolerance, TO:0002616 - flowering time, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity	PO:0009005 - root , PO:0000037 - shoot apex , PO:0009009 - plant embryo , PO:0000025 - root tip 
10279	GS2	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2, LGS1, OsLGS1	GRAIN SIZE 2	growth-regulating factor4, Growth-Regulating Factor 4, GRAIN SIZE ON CHROMOSOME 2, PANICLE TRAITS 2, grain length and width 2, Large Grain Size 1	GROWTH-REGULATING FACTOR 4	OsGRF4NGR2, OsGRF4ngr2, osgrf4, lgs1, LGS1-JF178, gs1-Ma85	2	BK004859. Q6ZIK5. AJ566408. LC333009, LC333010, LC333011. GO:0072488: ammonium transmembrane transport. GO:0071704: organic substance metabolic process. GO:1901347: negative regulation of secondary cell wall biogenesis. TO:0000845: collective phyllome structure morphology trait.	 Other,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Reproductive organ - Inflorescence,  Tolerance and resistance - Insect resistance,  Vegetative organ - Culm,  Seed,  Reproductive organ - Heading date,  Biochemical character,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance	Os02g0701300	LOC_Os02g47280.2, LOC_Os02g47280.1				GO:0009408 - response to heat, GO:0006109 - regulation of carbohydrate metabolic process, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0009834 - secondary cell wall biogenesis, GO:0006807 - nitrogen compound metabolic process, GO:0051781 - positive regulation of cell division, GO:0045848 - positive regulation of nitrogen utilization, GO:0051302 - regulation of cell division, GO:0009755 - hormone-mediated signaling, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold, GO:0010229 - inflorescence development, GO:0002213 - defense response to insect, GO:0051510 - regulation of unidimensional cell growth, GO:0050832 - defense response to fungus, GO:0030307 - positive regulation of cell growth, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0040008 - regulation of growth, GO:0080006 - internode patterning, GO:0030308 - negative regulation of cell growth	TO:0000382 - 1000-seed weight, TO:0002616 - flowering time, TO:0000620 - embryo development trait, TO:0000473 - grain shattering, TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000397 - grain size, TO:0000207 - plant height, TO:0002660 - cytokinin content, TO:0000621 - inflorescence development trait, TO:0002730 - grain shape, TO:0000396 - grain yield, TO:0000402 - grain width, TO:0000592 - 1000-dehulled grain weight, TO:0000271 - inflorescence length, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000040 - panicle length, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000449 - grain yield per plant	PO:0009066 - anther , PO:0001170 - seed development stage , PO:0000025 - root tip , PO:0001083 - inflorescence development stage , PO:0000037 - shoot apex 
10280	GRF6	OsGRF6	GROWTH-REGULATING FACTOR 6	growth-regulating factor6, GROWTH REGULATING FACTOR 6	GROWTH-REGULATING FACTOR 6	grf6, osgrf6	3	BK004861. AJ575243. (GRF6) is one of the targets of miR396 (Li et al. 2010). OsmiR396d target gene (Tang et al. 2018) TO:0000816: inflorescence bract anatomy and morphology trait. GO:1900150: regulation of defense response to fungus.	 Other,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os03g0729500	LOC_Os03g51970.1				GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0016563 - transcription activator activity, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0051510 - regulation of unidimensional cell growth, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000240 - sterile lemma length, TO:0000653 - seed development trait, TO:0000396 - grain yield, TO:0000620 - embryo development trait, TO:0006022 - floral organ development trait, TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0000259 - heat tolerance, TO:0000166 - gibberellic acid sensitivity	PO:0000025 - root tip , PO:0000037 - shoot apex , PO:0009009 - plant embryo 
10282	GRF8	OsGRF8	GROWTH-REGULATING FACTOR 8	growth-regulating factor8	GROWTH-REGULATING FACTOR 8		11	BK004863. Q6AWY1. GO:1900150: regulation of defense response to fungus. TO:0000975: grain width. TO:0020107: plant cell length. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0551900	LOC_Os11g35030.2, LOC_Os11g35030.1				GO:0050832 - defense response to fungus, GO:0009733 - response to auxin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0016563 - transcription activator activity, GO:0009739 - response to gibberellin stimulus, GO:0002213 - defense response to insect, GO:0005634 - nucleus, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005524 - ATP binding, GO:0006351 - transcription, DNA-dependent	TO:0000074 - blast disease, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0002655 - starch grain size, TO:0000424 - brown planthopper resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000290 - flavonoid content	PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009009 - plant embryo 
10283	GRF9	OsGRF9	GROWTH-REGULATING FACTOR 9	growth-regulating factor9	GROWTH-REGULATING FACTOR 9		3	BK004878. Q9FRG8. GO:1900150: regulation of defense response to fungus. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy,  Biochemical character	Os03g0674700	LOC_Os03g47140.1				GO:0009733 - response to auxin stimulus, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0010029 - regulation of seed germination, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016563 - transcription activator activity, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000259 - heat tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0007057 - 0 seed germination stage , PO:0009009 - plant embryo , PO:0009049 - inflorescence 
10284	GRF10	OsGRF10	GROWTH-REGULATING FACTOR 10	growth-regulating factor10	GROWTH-REGULATING FACTOR 10	grf10	2	BK004879. Q6EPP9. Os02g0678800 (GRF10) is one of the targets of miR396 (Li et al. 2010). TO:0000816: inflorescence bract anatomy and morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os02g0678800	LOC_Os02g45570.1, LOC_Os02g45570.2				GO:0006351 - transcription, DNA-dependent, GO:0005524 - ATP binding, GO:0016563 - transcription activator activity, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus	TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0000240 - sterile lemma length, TO:0006022 - floral organ development trait	PO:0009009 - plant embryo 
10285	GRF11	OsGRF11	GROWTH-REGULATING FACTOR 11	growth-regulating factor11	GROWTH-REGULATING FACTOR 11		7	BK004880, D40170, AU174496. Q6AWX8.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0467500	LOC_Os07g28430.1				GO:0006351 - transcription, DNA-dependent, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0005634 - nucleus	TO:0000074 - blast disease, TO:0000259 - heat tolerance	PO:0009066 - anther , PO:0009009 - plant embryo 
10286	GRF12	OsGRF12	GROWTH-REGULATING FACTOR 12	growth-regulating factor12	GROWTH-REGULATING FACTOR 12		4	BK004881. Q6AWX7.	 Biochemical character	Os04g0574500	LOC_Os04g48510.1				GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0009739 - response to gibberellin stimulus, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016563 - transcription activator activity	TO:0000166 - gibberellic acid sensitivity	PO:0009009 - plant embryo 
10287	GRF5	OsGRF5	GROWTH-REGULATING FACTOR 5	growth-regulating factor5	GROWTH-REGULATING FACTOR 5		6	BK004860. Q6AWY4. AJ566409. 	 Biochemical character,  Vegetative organ - Culm,  Other,  Seed,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os06g0116200	LOC_Os06g02560.3, LOC_Os06g02560.2, LOC_Os06g02560.1				GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0016563 - transcription activator activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent	TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000620 - embryo development trait, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity, TO:0002616 - flowering time	PO:0000037 - shoot apex , PO:0000025 - root tip , PO:0009009 - plant embryo 
10288	GER1	OsGLP8-4, GLP8-4, OsGER1, OsGer1, OsCDP8.4, CDP8.4	GERMIN-LIKE PROTEIN 1	Germin-like protein 8-4, germin-like protein 1, cupin domain protein 8.4	GERMIN-LIKE PROTEIN 1		8	AF032971. Q6YZZ6.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance	Os08g0189300	LOC_Os08g08980.1				GO:0009651 - response to salt stress, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0045735 - nutrient reservoir activity, GO:0009607 - response to biotic stimulus, GO:0030145 - manganese ion binding	TO:0006001 - salt tolerance, TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance	PO:0009010 - seed 
10289	GLP8-10	OsGLP8-10, OsRGLP2, RGLP2, OsCDP8.10, CDP8.10	GERMIN-LIKE PROTEIN 8-10	Germin-like protein 8-10, cupin domain protein 8.10	GERMIN-LIKE PROTEIN 8-10	glp8-10	8	cupin domain containing protein. GO:1990169: stress response to copper ion.	 Tolerance and resistance,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os08g0189900	LOC_Os08g09060.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0002242 - defense response to parasitic plant, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0045735 - nutrient reservoir activity, GO:0002213 - defense response to insect, GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0046688 - response to copper ion, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0034059 - response to anoxia	TO:0000621 - inflorescence development trait, TO:0000021 - copper sensitivity, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000477 - panicle blast disease resistance, TO:0000444 - parasitic weed	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
10290	GLP12-4	OsGLP12-4, OsCDP12.4, CDP12.4	GERMIN-LIKE PROTEIN 12-4	cupin domain protein 12.4	GERMIN-LIKE PROTEIN 12-4		12		 Seed - Physiological traits - Storage substances	Os12g0155000	LOC_Os12g05880.1				GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0016023 - cytoplasmic membrane-bounded vesicle, GO:0048046 - apoplast		
10291	TMT1	OsTMT1, OsAZT4, AZT4	TONOPLAST MONOSACCHARIDE TRANSPORTER 1	AZT protein 4, AZT-type monosaccharide transporter 4, monosaccharide transporter AZT4	TONOPLAST MONOSACCHARIDE TRANSPORTER 1		10	GU066765.	 Biochemical character	Os10g0539900	LOC_Os10g39440.2, LOC_Os10g39440.1				GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity	TO:0000333 - sugar content	
10292	TMT2	OsTMT2, AZT1, OsAZT1	TONOPLAST MONOSACCHARIDE TRANSPORTER 2	AZT protein 1, AZT-type monosaccharide transporter 1, monosaccharide transporter AZT1	TONOPLAST MONOSACCHARIDE TRANSPORTER 2		2	GU066766. Vacuolar sugar transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0229400	LOC_Os02g13560.4, LOC_Os02g13560.3, LOC_Os02g13560.2, LOC_Os02g13560.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0022857 - transmembrane transporter activity, GO:0009749 - response to glucose stimulus, GO:0009744 - response to sucrose stimulus, GO:0009750 - response to fructose stimulus	TO:0000333 - sugar content, TO:0000238 - growth media composition sensitivity	PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0020104 - leaf sheath 
10293	TDC1	OsTDC, TDC, TDC2, OsTDC1, OsTDC4	TRYPTOPHAN DECARBOXYLASE 1	Trp decarboxylase 1, tryptophan decarboxylase	TRYPTOPHAN DECARBOXYLASE 1		8	Q6ZJK7. PDB ID: 6KHO, 6KHP and 6KHN. Senescence-induced serotonin biosynthesis. Aromatic L-amino acid decarboxylase (AADC) (E.C.4.1.1.28) TDC2 in Liu et al. 2015. OsTDC4 in Bhowal et al. 2021. GO:0036469: L-tryptophan decarboxylase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0140300	LOC_Os08g04540.1				GO:0009739 - response to gibberellin stimulus, GO:0009723 - response to ethylene stimulus, GO:0006587 - serotonin biosynthetic process from tryptophan, GO:0009737 - response to abscisic acid stimulus, GO:0010224 - response to UV-B, GO:0009411 - response to UV, GO:0009607 - response to biotic stimulus, GO:0009851 - auxin biosynthetic process, GO:0030187 - melatonin biosynthetic process, GO:0009741 - response to brassinosteroid stimulus, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0016831 - carboxy-lyase activity, GO:0009651 - response to salt stress, GO:0007623 - circadian rhythm, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0006520 - cellular amino acid metabolic process, GO:0009409 - response to cold, GO:0009725 - response to hormone stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000163 - auxin sensitivity, TO:0000179 - biotic stress trait	PO:0009005 - root , PO:0007010 - whole plant fruit ripening stage 
10294	TDC2	OsTDC2, OsTDC3	TRYPTOPHAN DECARBOXYLASE 2	Trp decarboxylase 2	TRYPTOPHAN DECARBOXYLASE 2		7	Q7XHL3. E.C.4.1.1.28 OsTDC3 in Bhowal et al. 2021.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0437500	LOC_Os07g25590.1				GO:0009611 - response to wounding, GO:0006520 - cellular amino acid metabolic process, GO:0009646 - response to absence of light, GO:0005737 - cytoplasm, GO:0004837 - tyrosine decarboxylase activity, GO:0010446 - response to alkalinity, GO:0009725 - response to hormone stimulus, GO:0030187 - melatonin biosynthetic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009851 - auxin biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0009409 - response to cold, GO:0042427 - serotonin biosynthetic process, GO:0009741 - response to brassinosteroid stimulus, GO:0030186 - melatonin metabolic process, GO:0004058 - aromatic-L-amino-acid decarboxylase activity, GO:0009416 - response to light stimulus, GO:0007623 - circadian rhythm	TO:0002677 - brassinosteroid sensitivity, TO:0000075 - light sensitivity, TO:0000259 - heat tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000481 - alkali sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
10295	TYDC	TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3, OsTDC1	TYROSHINE DECARBOXYLASE	Tyr decarboxylase, tryptophan decarboxylase	TYROSHINE DECARBOXYLASE		1	AB162137. Conversion of tyrosine into tyramine. Aromatic L-amino acid decarboxylase (E.C.4.1.1.28) OsTDC1 in Bhowal et al. 2021.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0770200	LOC_Os01g56380.1				GO:0009409 - response to cold, GO:0009607 - response to biotic stimulus, GO:0009646 - response to absence of light, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0030170 - pyridoxal phosphate binding, GO:0016831 - carboxy-lyase activity, GO:0006520 - cellular amino acid metabolic process	TO:0000173 - ethylene sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000075 - light sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000179 - biotic stress trait, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009006 - shoot system , PO:0007041 - inflorescence emergence stage 
10296	-	OsRecQ1	-	QDE-3 homologue in rice, RecQ DNA helicase, RecQ-like helicase 1			11			Os11g0672700	LOC_Os11g44910.1, LOC_Os11g44910.2, LOC_Os11g44910.3				GO:0003676 - nucleic acid binding, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0006310 - DNA recombination		
10297	CYP704B2	OsCYP704B2	CYTOCHROME P450 HYDROXYLASE 704B2	Cytochrome P450 704B2	CYTOCHROME P450 HYDROXYLASE 704B2	cyp704b2, oscyp704b2	3	Anther cutin biosynthesis and pollen exine formation. fatty acid omega-hysroxylase. cyp704b2 rice mutants exhibit anther cuticle defects (Li et al., 2010). a member of fatty acid metabolic gene cluster on chromosome 3 (FGC3). PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0168600	LOC_Os03g07250.1				GO:0005506 - iron ion binding, GO:0010143 - cutin biosynthetic process, GO:0042542 - response to hydrogen peroxide, GO:0048653 - anther development, GO:0018685 - alkane 1-monooxygenase activity, GO:0080110 - sporopollenin biosynthetic process, GO:0048437 - floral organ development, GO:0048658 - tapetal layer development, GO:0009555 - pollen development, GO:0010208 - pollen wall assembly, GO:0005783 - endoplasmic reticulum, GO:0009055 - electron carrier activity	TO:0000531 - anther length, TO:0000449 - grain yield per plant, TO:0000218 - pollen abortion type, TO:0000187 - anther color, TO:0006022 - floral organ development trait, TO:0000437 - male sterility, TO:0002657 - oxidative stress	PO:0009049 - inflorescence , PO:0001004 - anther development stage , PO:0025385 - cutin , PO:0001007 - pollen development stage 
10298	COL4	OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, BBX5, CCT06	CONSTANS-LIKE GENE 4	CONSTANS-like gene 4, B-box-containing protein 5, CCT domain-containing gene 6, CCT (CO, CO-LIKE and TOC1) domain protein 6, CCT domain protein 6, OsCO  like2	CONSTANS-LIKE PROTEIN 4	oscol4	2	MT435799 - MT435928. CO-like protein containing two B-box zinc finger domains and one CCT domain. floral repressor. OsCO  like2 in Li et al. 2023.	 Reproductive organ - Heading date	Os02g0610500	LOC_Os02g39710.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0005622 - intracellular, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading	PO:0009006 - shoot system , PO:0009066 - anther , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0007616 - flowering stage 
10299	CO3	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31	CONSTANS 3	CONSTANS-like gene B, B-box-containing protein 27, CCT domain-containing gene 31, CCT (CO, CO-LIKE and TOC1) domain protein 31, CCT domain protein 31	CONSTANS 3	CO3-CR	9	AB001887, S12569. CT835894. Zinc-finger Protein. floral repressor. GO:2000028: regulation of photoperiodism, flowering.	 Reproductive organ - Heading date	Os09g0240200 	LOC_Os09g06464.1				GO:0048573 - photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0005622 - intracellular, GO:0005634 - nucleus, GO:0007623 - circadian rhythm	TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0025034 - leaf , PO:0009006 - shoot system , PO:0007616 - flowering stage 
10305	-	OsI	-	CONSTANS-like gene I			7	AP005307 (Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0046D03). 									
10306	-	OsJ	-	CONSTANS-like gene J			3	AC087181									
10307	-	OsK	-	CONSTANS-like gene K													
10308	-	OsL	-	CONSTANS-like gene L			6	AP004993									
10309	-	OsM	-	CONSTANS-like gene M													
10310	BBX7	OsN, OsBBX7, OsCCT08, OsCCT8, OsDTH2, CCT08, CCT8, DTH2	_	CONSTANS-like gene N, B-box-containing protein 7, CCT domain-containing gene 8, CCT (CO, CO-LIKE and TOC1) domain protein 8, CCT domain protein 8		dth2, oscct8	2	S3574, AB001888. CT832281, CT832280, CT832282, CT832279. Zinc-finger Protein. 	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Vegetative organ - Culm	Os02g0724000	LOC_Os02g49230.4, LOC_Os02g49230.6, LOC_Os02g49230.5, LOC_Os02g49230.1, LOC_Os02g49230.2, LOC_Os02g49230.3				GO:0010045 - response to nickel ion, GO:0008270 - zinc ion binding, GO:0007623 - circadian rhythm, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010039 - response to iron ion, GO:0009751 - response to salicylic acid stimulus, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity, TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0009010 - seed , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0009089 - endosperm 
10311	-	OsO	-	CONSTANS-like gene O													
10312	BBX9	OsP, OsBBX9, OsCCT12, CCT12	B-BOX-CONTAINING PROTEIN 9	CONSTANS-like gene P, B-box-containing protein 9, CCT domain-containing gene 12, CCT (CO, CO-LIKE and TOC1) domain protein 12, CCT domain protein 12	B-BOX-CONTAINING PROTEIN 9		3	AB001882. Zinc-finger Protein	 Tolerance and resistance - Stress tolerance	Os03g0351100	LOC_Os03g22770.2, LOC_Os03g22770.1				GO:0005622 - intracellular, GO:0046686 - response to cadmium ion, GO:0007623 - circadian rhythm, GO:0008270 - zinc ion binding, GO:0010045 - response to nickel ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0007616 - flowering stage , PO:0009066 - anther , PO:0009006 - shoot system , PO:0009010 - seed 
10314	_	Os3378-1	_	Mutatorlike element Os3378-1, MULE Os3378-1			5	AP008211: 1334664 to 18339057	 Other								
10315	_	Os3378-2	_	Mutatorlike element Os3378-2, MULE Os3378-2			4	AP008210: 16795928-16800322	 Other								
10316	_	Os3378-3	_	Mutatorlike element Os3378-3, MULE Os3378-3			4	AP008210: 16760748-168756355	 Other								
10317	_	Os3378-4	_	Mutatorlike element Os3378-4, MULE Os3378-4			11	AP008217: 28527877-28531720. truncated element	 Other								
10318	CBSX1	OsCBSX1, Cen8.t00941	_	cystathionine b-synthase domain containing protein OsCBSX1, CBS domain containing protein OsCBSX1	_		8	a Cen8 (centromere of chromosome 8) Active Gene. CBSX for proteins containing only a single CBS domain. O. barthii: OBART08G10130, O. brachyantha: OB08G19240, O. glaberrima: ORGLA08G0088800, O. rufipogon: ORUFI08G11440, , O. nivara: ONIVA08G10830, O. meridionalis: OMERI08G08660, O. longistaminata: KN540332.1_FG002, O. sativa indica: BGIOSGA014003, O. glumaepatula: OGLUM08G11030.	 Tolerance and resistance - Stress tolerance	Os08g0313200	LOC_Os08g22149.1				GO:0034059 - response to anoxia, GO:0009570 - chloroplast stroma, GO:0001666 - response to hypoxia	TO:0000015 - oxygen sensitivity	
10319	CBSX2	OsCBSX2	_	cystathionine b-synthase domain containing protein OsCBSX2, CBS domain containing protein OsCBSX2	_		9	CBSX for proteins containing only a single CBS domain. O. barthii: OBART09G00750, O. brachyantha: OB09G10450, O. glaberrima: ORGLA09G0006600, O. rufipogon: ORUFI09G00780, O. punctata: OPUNC09G00530, O. nivara: ONIVA09G00790, O. meridionalis: OMERI09G00790, O. longistaminata: KN538975.1_FGP001, O. sativa indica: BGIOSGA030223, O. glumaepatula: OGLUM09G01050.	 Tolerance and resistance - Stress tolerance	Os09g0115500	LOC_Os09g02710.1				GO:0009570 - chloroplast stroma, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
10320	CBSX3	OsCBSX3, OsCBSX3a, OsCBSX3b, OsCBSX3c, OsCBSX3d, OsCBSX3e	_	cystathionine b-synthase domain containing protein OsCBSX3, CBS domain containing protein OsCBSX3	_		2	CBSX for proteins containing only a single CBS domain. O. barthii: OBART02G37390, O. brachyantha: OB02G44090, O. glaberrima: ORGLA02G0326000, O. rufipogon: ORUFI02G38890, O. punctata: OPUNC02G34550, O. nivara: ONIVA02G40140, O. meridionalis: OMERI02G35160, O. longistaminata: KN539631.1_FGP002, O. sativa indica: BGIOSGA009298, O. glumaepatula: OGLUM02G38520.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0818000	LOC_Os02g57280.1, LOC_Os02g57280.4, LOC_Os02g57280.5, LOC_Os02g57280.6, LOC_Os02g57280.7, LOC_Os02g57280.8				GO:0034059 - response to anoxia, GO:0001666 - response to hypoxia, GO:0009651 - response to salt stress, GO:0003824 - catalytic activity, GO:0008152 - metabolic process	TO:0006001 - salt tolerance, TO:0000015 - oxygen sensitivity	
10321	CBSX4	OsCBSX4, OsCBSX4a, OsCBSX4b, OsCBSX4c, OsCBSX4d, OsCBSX4e, OsCBSX4f	_	cystathionine b-synthase domain containing protein OsCBSX4, CBS domain containing protein OsCBSX4	_		3	CBSX for proteins containing only a single CBS domain. O. barthii: OBART03G33380, O. brachyantha: OB03G40470, O. glaberrima: ORGLA03G0303100, O. rufipogon: ORUFI03G34760, O. punctata: OPUNC03G30600, O. nivara: ONIVA01G07590, O. meridionalis: OMERI03G30610, O. longistaminata: KN539195.1_FGP002, O. sativa indica: BGIOSGA009847, O. glumaepatula: OGLUM03G33040. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0737000	LOC_Os03g52690.8, LOC_Os03g52690.7, LOC_Os03g52690.1, LOC_Os03g52690.2, LOC_Os03g52690.3, LOC_Os03g52690.4, LOC_Os03g52690.5, LOC_Os03g52690.6				GO:0005739 - mitochondrion, GO:0003824 - catalytic activity, GO:0009408 - response to heat, GO:0050897 - cobalt ion binding, GO:0009651 - response to salt stress, GO:0008152 - metabolic process	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	PO:0000003 - whole plant , PO:0009005 - root , PO:0009006 - shoot system , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009047 - stem , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009051 - spikelet , PO:0020103 - flag leaf , PO:0009049 - inflorescence 
10322	CBSX5	OsCBSX5	_	cystathionine b-synthase domain containing protein OsCBSX5, CBS domain containing protein OsCBSX5, cystathionine beta-synthase X5	_		4	CBSX for proteins containing only a single CBS domain. O. barthii: OBART04G01510, O. brachyantha: OB04G11410, O. glaberrima: ORGLA04G0012700, O. rufipogon: ORUFI04G01970, O. punctata: OPUNC04G01560, O. nivara: ONIVA04G01220, O. meridionalis: OMERI04G01560, O. longistaminata: KN540164.1_FGP003, O. sativa indica: BGIOSGA038246, O. glumaepatula: OGLUM09G00370.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0136700	LOC_Os04g05010.1				GO:0009408 - response to heat, GO:0009970 - cellular response to sulfate starvation, GO:0042594 - response to starvation, GO:0003824 - catalytic activity, GO:0008152 - metabolic process	TO:0000007 - sulfur sensitivity, TO:0000259 - heat tolerance	
10323	CBSX6	OsCBSX6	_	cystathionine b-synthase domain containing protein OsCBSX6, CBS domain containing protein OsCBSX6	_		1	CBSX for proteins containing only a single CBS domain. O. barthii: OBART01G23850, O. brachyantha: OB01G33220, O. rufipogon: ORUFI01G26680, O. punctata: OPUNC01G23900, O. nivara: ONIVA01G26810, O. meridionalis: OMERI01G21950, O. longistaminata: KN538828.1_FGP037, O. sativa indica: BGIOSGA004059, O. glumaepatula: OGLUM01G27660.	 Biochemical character	Os01g0634900	LOC_Os01g44360.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity		
10324	CBSX7	OsCBSX7, OsCBSX7a, OsCBSX7b, OsCBSCBS1, CBSCBS1	_	cystathionine b-synthase domain containing protein OsCBSX7, CBS domain containing protein OsCBSX7	_		1	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified. CBSCBS nomenclature was given to the proteins containing only two CBS domains. CBSX for proteins containing only a single CBS domain. CBSCBS1 in Tomar et al. 2022. O. barthii: OBART01G20960, O. brachyantha: OB01G30560, O. rufipogon: ORUFI01G23670, O. punctata: OPUNC01G21010, O. nivara: ONIVA01G23560, O. meridionalis: OMERI01G19150, O. longistaminata: KN538783.1_FGP013, O. sativa indica: BGIOSGA001328, O. glumaepatula: OGLUM01G24630. PO:0030123: panicle inflorescence.	 Biochemical character	Os01g0586600	LOC_Os01g40420.1, LOC_Os01g40420.2, LOC_Os01g40420.3				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		PO:0009051 - spikelet , PO:0020103 - flag leaf , PO:0009089 - endosperm , PO:0009005 - root , PO:0009047 - stem , PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0000003 - whole plant 
10325	CBSX8	OsCBSX8, CBSCBSCBD1, OsCBSCBSCBD1	_	cystathionine b-synthase domain containing protein OsCBSX8, CBS domain containing protein OsCBSX8	_		3	CBSX for proteins containing only a single CBS domain. CBSCBSCBD for proteins containing two CBS domains and one CBD domain. CBSCBSCBD1 in Tomar et al. 2022. O. barthii: OBART03G41570, O. brachyantha: OB03G48600, O. glaberrima: ORGLA03G0385000, O. rufipogon: ORUFI03G43350, O. punctata: OPUNC03G38580, O. nivara: ONIVA03G44080, O. meridionalis: OMERI03G38270, O. longistaminata: KN538745.1_FGP032, O. sativa indica: BGIOSGA013983, O. glumaepatula: OGLUM03G41400. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0856400	LOC_Os03g63940.1				GO:0016301 - kinase activity, GO:0042149 - cellular response to glucose starvation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009009 - plant embryo , PO:0009006 - shoot system , PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0020103 - flag leaf , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0009089 - endosperm , PO:0000003 - whole plant 
10326	CBSX9	OsCBSX9	_	cystathionine b-synthase domain containing protein OsCBSX9, CBS domain containing protein OsCBSX9	_		2	CBSX for proteins containing only a single CBS domain. O. barthii: OBART02G04490, O. brachyantha: OB02G13800, O. glaberrima: ORGLA02G0041600, O. rufipogon: ORUFI02G04640, O. punctata: OPUNC02G03750, O. nivara: ONIVA02G04500, O. meridionalis: OMERI02G05310, O. sativa indica: BGIOSGA007572, O. glumaepatula: OGLUM02G04420.	 Tolerance and resistance - Stress tolerance	Os02g0158900	LOC_Os02g06410.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0001666 - response to hypoxia, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity	PO:0009009 - plant embryo , PO:0009005 - root , PO:0009089 - endosperm 
10327	CBSX10	OsCBSX10, CBSCBS4, OsCBSCBS4	_	cystathionine b-synthase domain containing protein OsCBSX10, CBS domain containing protein OsCBSX10	_		1	CBSX for proteins containing only a single CBS domain. CBSCBS nomenclature was given to the proteins containing only two CBS domains. CBSCBS4 in Tomar et al. 2022. O. barthii: OBART01G23730, O. brachyantha: OB01G33160, O. glaberrima: ORGLA01G0192900, O. rufipogon: ORUFI01G26590, O. punctata: OPUNC01G23850, O. nivara: ONIVA01G26710, O. meridionalis: OMERI01G21900, O. longistaminata: KN538828.1_FGP039, O. sativa indica: BGIOSGA004055, O. glumaepatula: OGLUM01G27560.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0633400	LOC_Os01g44250.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009089 - endosperm , PO:0009009 - plant embryo 
10328	CBSX11	OsCBSX11	_	cystathionine b-synthase domain containing protein OsCBSX11, CBS domain containing protein OsCBSX11	_		2	CBSX for proteins containing only a single CBS domain. O. barthii: OBART02G25440, O. brachyantha: OB02G32800, O. rufipogon: ORUFI02G26820, O. punctata: OPUNC02G23230, O. nivara: ONIVA02G27880, O. meridionalis: OMERI02G24920, O. longistaminata: KN539013.1_FGP003, O. sativa indica: BGIOSGA008689, O. glumaepatula: OGLUM02G25950.		Os02g0639300	LOC_Os02g42640.1						
10329	CBSX12	OsCBSX12	_	cystathionine b-synthase domain containing protein OsCBSX12, CBS domain containing protein OsCBSX12	_		4	CBSX for proteins containing only a single CBS domain. O. barthii: OBART04G29820, O. brachyantha: OB04G36790, O. glaberrima: ORGLA04G0261200, O. rufipogon: ORUFI04G31480, O. punctata: OPUNC04G27350, O. nivara: ONIVA04G28300, O. meridionalis: OMERI04G25210, O. sativa indica: BGIOSGA014082, O. glumaepatula: OGLUM04G29730.	 Tolerance and resistance - Stress tolerance	Os04g0679600	LOC_Os04g58310.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
10330	CBSCLC1	OsCBSCLC1, OsCLC1, CLC1	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 1	cystathionine b-synthase domain containing protein OsCBSCLC1, CBS domain containing protein OsCBSCLC1, CBS domain containing protein 1, ChLoride Channel 1	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 1		1	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART01G39050, O. brachyantha: OB01G47840, O. glaberrima: ORGLA01G0329900, O. rufipogon: ORUFI01G42410, O. punctata: OPUNC01G37800, O. nivara: ONIVA01G43900, O. meridionalis: OMERI01G36000, O. longistaminata: KN539884.1_FGP008, O. sativa indica: BGIOSGA004909, O. glumaepatula: OGLUM01G43320.	 Reproductive organ,  Tolerance and resistance - Stress tolerance	Os01g0876100	LOC_Os01g65500.1				GO:0005247 - voltage-gated chloride channel activity, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009705 - plant-type vacuole membrane	TO:0006001 - salt tolerance	PO:0000084 - plant sperm cell 
10331	CBSCLC2	OsCBSCLC2, OsCLC2, CLC2	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 2	cystathionine b-synthase domain containing protein OsCBSCLC2, CBS domain containing protein OsCBSCLC2, CBS domain containing protein 2, ChLoride Channel 2	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 2		1	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART01G27980, O. brachyantha: OB01G37140, O. glaberrima: ORGLA01G0231200, O. rufipogon: ORUFI01G31050, O. punctata: OPUNC01G27880, O. nivara: ONIVA01G31950, O. longistaminata: KN539741.1_FGP010, O. sativa indica: BGIOSGA004288, O. glumaepatula: OGLUM01G31960.		Os01g0704700	LOC_Os01g50860.1				GO:0009535 - chloroplast thylakoid membrane, GO:0005247 - voltage-gated chloride channel activity		
10332	CLC2	CBSCLC3, OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1, OsCLC2, OsCLC-2, CLC-2, OsCLC3, CLC3	CHLORIDE CHANNEL 2	cystathionine b-synthase domain containing protein OsCBSCLC3, CBS domain containing protein OsCBSCLC3, CBS domain containing protein 3, Cl-channel 1, CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3, ChLoride Channel 3	CHLORIDE CHANNEL 2		2	AB069967, AB069968. These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART02G20670, O. brachyantha: OB02G28240, O. glaberrima: ORGLA02G0177300, O. rufipogon: ORUFI02G21700, O. punctata: OPUNC02G18580, O. nivara: ONIVA02G22650, O. meridionalis: OMERI02G20380, O. longistaminata: KN538737.1_FGP009, O. sativa indica: BGIOSGA006252, O. glumaepatula: OGLUM02G20940. OsCLC2 in Neang et al. 2020. OsCLC3 in Nedelyaeva et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0558100	LOC_Os02g35190.2, LOC_Os02g35190.1				GO:0016021 - integral to membrane, GO:0005247 - voltage-gated chloride channel activity, GO:0009651 - response to salt stress, GO:0001666 - response to hypoxia, GO:0034059 - response to anoxia, GO:0005254 - chloride channel activity	TO:0000015 - oxygen sensitivity, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath 
10333	CBSCLC4	OsCBSCLC4, OsCLC4, CLC4	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 4	cystathionine b-synthase domain containing protein OsCBSCLC4, CBS domain containing protein OsCBSCLC4, CBS domain containing protein 4, ChLoride Channel 4	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 4		3	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART03G30570, O. brachyantha: OB03G37650, O. glaberrima: ORGLA03G0280100, O. rufipogon: ORUFI03G31810, O. punctata: OPUNC03G27870, O. nivara: ONIVA03G31920, O. meridionalis: OMERI03G26730, O. longistaminata: KN542832.1_FGP001, O. sativa indica: BGIOSGA009993, O. glumaepatula: OGLUM03G30790.	 Tolerance and resistance - Stress tolerance	Os03g0695700	LOC_Os03g48940.3, LOC_Os03g48940.2, LOC_Os03g48940.1				GO:0005802 - trans-Golgi network, GO:0010038 - response to metal ion, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005216 - ion channel activity, GO:0009826 - unidimensional cell growth	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
10334	CBSCLC5	OsCBSCLC5, OsCLC5, CLC5	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 5	cystathionine b-synthase domain containing protein OsCBSCLC5, CBS domain containing protein OsCBSCLC5, CBS domain containing protein 5, chloride channel 5	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 5		4	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART04G27250, O. brachyantha: OB04G34170, O. glaberrima: ORGLA04G0235000, O. rufipogon: ORUFI04G28900, O. punctata: OPUNC04G24730, O. nivara: ONIVA04G25550, O. meridionalis: OMERI04G22690, O. longistaminata: KN538912.1_FGP009, O. sativa indica: BGIOSGA017236, O. glumaepatula: OGLUM04G27200.	 Tolerance and resistance - Stress tolerance	Os04g0644800	LOC_Os04g55210.1				GO:0005247 - voltage-gated chloride channel activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0016020 - membrane	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0020104 - leaf sheath 
10335	CBSCLC6	OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b, OsCLC6, CLC6	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 6	cystathionine b-synthase domain containing protein OsCBSCLC6, CBS domain containing protein OsCBSCLC6, CBS domain containing protein 6, chloride channel 6	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 6		8	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART08G09810, O. brachyantha: OB08G18730, O. glaberrima: ORGLA08G0084800, O. rufipogon: ORUFI08G11100, O. punctata: OPUNC08G09140, O. nivara: ONIVA08G10550, O. longistaminata: KN538923.1_FGP002, O. sativa indica: BGIOSGA028422, O. glumaepatula: OGLUM08G10690.	 Tolerance and resistance - Stress tolerance	Os08g0300300	LOC_Os08g20570.2, LOC_Os08g20570.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0020104 - leaf sheath 
10336	CBSCLC7	OsCBSCLC7, OsCLC7, CLC7	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 7	cystathionine b-synthase domain containing protein OsCBSCLC7, CBS domain containing protein OsCBSCLC7, CBS domain containing protein 7, ChLoride Channel 7	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 7		12	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART12G10660, O. brachyantha: OB12G19240, O. glaberrima: ORGLA12G0099500, O. rufipogon: ORUFI12G11740, O. punctata: OPUNC12G09550, O. nivara: ONIVA08G11240, O. meridionalis: OMERI12G07260, O. longistaminata: KN540094.1_FGP001, O. sativa indica: BGIOSGA036265, O. glumaepatula: OGLUM12G11730.	 Tolerance and resistance - Stress tolerance	Os12g0438600	LOC_Os12g25200.1				GO:0010167 - response to nitrate, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane, GO:0009671 - nitrate:hydrogen symporter activity, GO:0005247 - voltage-gated chloride channel activity	TO:0006001 - salt tolerance	
10337	CBSCLC8	OsCBSCLC8	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8	cystathionine b-synthase domain containing protein OsCBSCLC8, CBS domain containing protein OsCBSCLC8, CBS domain containing protein 8	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8		8	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART08G19330, O. brachyantha: OB08G26380, O. glaberrima: ORGLA08G0170000, O. rufipogon: ORUFI08G21610, O. punctata: OPUNC08G17380, O. nivara: ONIVA08G21390, O. meridionalis: OMERI08G15970, O. longistaminata: KN539998.1_FGP007, O. sativa indica: BGIOSGA028930, O. glumaepatula: OGLUM08G20420.	 Biochemical character	Os08g0499200	LOC_Os08g38980.1				GO:0005794 - Golgi apparatus, GO:0003824 - catalytic activity, GO:0005247 - voltage-gated chloride channel activity, GO:0016021 - integral to membrane, GO:0008152 - metabolic process, GO:0009507 - chloroplast		
10338	CBSCLC9	OsCBSCLC9, OsCBSCLC9a, OsCBSCLC9b	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9	cystathionine b-synthase domain containing protein OsCBSCLC9, CBS domain containing protein OsCBSCLC9, CBS domain containing protein 9	CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9		2	These CBSCLC proteins belong to chloride channel protein (CLC) family. CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART02G30500, O. brachyantha: OB02G37640, O. glaberrima: ORGLA02G0260400, O. rufipogon: ORUFI02G32200, O. punctata: OPUNC02G28140, O. nivara: ONIVA02G33300, O. meridionalis: OMERI02G29500, O. longistaminata: KN539828.1_FGP002, O. sativa indica: BGIOSGA005723, O. glumaepatula: OGLUM02G31200.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0720700	LOC_Os02g48880.1, LOC_Os02g48880.2				GO:0005794 - Golgi apparatus, GO:0003824 - catalytic activity, GO:0034059 - response to anoxia, GO:0001666 - response to hypoxia, GO:0005247 - voltage-gated chloride channel activity, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0008152 - metabolic process	TO:0000015 - oxygen sensitivity	
10339	CBSCLC10	OsCBSCLC10, OsCBSCLC10a, OsCBSCLC10b	CYSTATHIONINE B-SYSTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 10	cystathionine b-synthase domain containing protein OsCBSCLC10, CBS domain containing protein OsCBSCLC10, CBS domain containing protein 10	CYSTATHIONINE B-SYSTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 10		4	These CBSCLC proteins belong to chloride channel protein (CLC) family. LOC_Os04g36560 (not found in MSU Rice Genome Annotation Project Release 7 data). CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART04G13680, O. brachyantha: OB04G20940, O. glaberrima: ORGLA04G0107400, O. rufipogon: ORUFI04G14940, O. punctata: OPUNC04G11570, O. nivara: ONIVA04G11880, O. meridionalis: OMERI04G12300, O. longistaminata: KN538758.1__FGP045, O. sativa indica: BGIOSGA015026, O. glumaepatula: OGLUM04g13430.									
10340	CBSDUFCH1	OsCBSDUFCH1, OsCBSDUFCH1a, OsCBSDUFCH1b	_	cystathionine b-synthase domain containing protein OsCBSDUFCH1, CBS domain containing protein OsCBSDUFCH1	_		3	These CBSDUFCH proteins contain a domain of unknown function (DUF21)(PF01595) at the N-terminus adjacent to a CBS domain and a CorC_HlyC domain (PF03471) at the C-terminus. CBSDUFCH for protein containing one CBS domain along with DUF and CorC_HlyC domains. O. barthii: OBART03G24980, O. brachyantha: OB03G33260, O. glaberrima: ORGLA03G0231500, O. rufipogon: ORUFI03G25590, O. punctata: OPUNC03G22890, O. nivara: ONIVA05G20570, O. meridionalis: OMERI09G00570, O. longistaminata: KN539929.1_FGP005, O. sativa indica: BGIOSGA010327, O. glumaepatula: OGLUM03G25680.		Os03g0593200	LOC_Os03g39640.2				GO:0050660 - FAD binding		
10341	CBSSIS1	OsCBSSIS1	_	cystathionine b-synthase domain containing protein OsCBSSIS1, CBS domain containing protein OsCBSSIS1, Rib-5-P isomerase	_		2	Proteins containing sugar isomerase (SIS) domain along with a CBS domain have been classified in this CBSSIS subgroup. CBSSIS for proteins containing one CBS domain and a SIS domain. O. barthii: OBART02G04440, O. brachyantha: OB02G13760, O. glaberrima: ORGLA02G0041100, O. rufipogon: ORUFI02G04580, O. punctata: OPUNC02G03710, O. nivara: ONIVA02G04440, O. meridionalis: OMERI02G05280, O. longistaminata: AMDW01038281.1_FGP001, O. sativa indica: BGIOSGA007570, O. glumaepatula: OGLUM02G04360.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0158300	LOC_Os02g06360.1				GO:0016853 - isomerase activity, GO:0005975 - carbohydrate metabolic process, GO:0034059 - response to anoxia, GO:0001666 - response to hypoxia, GO:0030246 - carbohydrate binding	TO:0000015 - oxygen sensitivity	
10342	DPS1	OsCBSDUF1, OsCBSDUF1a, OsCBSDUF1b, CBSDUF1, CBSDUF1a, CBSDUF1b	DEGENERATED PANICLE AND PARTIAL STERILITY 1	cystathionine b-synthase domain containing protein OsCBSDUF1, CBS domain containing protein OsCBSDUF1	_	dps1, dps1-3, dps1-13	5	MK351894, MK351895. Proteins classified in this CBSDUF subgroup contain a DUF21 domain at the N-terminus, along with a CBS domain. CBSDUF for proteins containing one CBS domain and a DUF domain. TO:0000847: panicle inflorescence morphology trait. GO:0072593: reactive oxygen species metabolic process. PO:0030123: panicle inflorescence. TO:1000022: anther morphology trait. GO:1904276: regulation of wax biosynthetic process. GO:1901957: regulation of cutin biosynthetic process. O. barthii: OBART05G15460, O. brachyantha: OB05G23380, O. glaberrima: ORGLA05G0133400, O. rufipogon: ORUFI05G16590, O. punctata: OPUNC05G13520, O. nivara: ONIVA05G15910, O. longistaminata: KN538789.1_FGP036, O. sativa indica: BGIOSGA019818, O. glumaepatula: OGLUM05G16330. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os05g0395300	LOC_Os05g32850.2, LOC_Os05g32850.1				GO:0010143 - cutin biosynthetic process, GO:0010025 - wax biosynthetic process, GO:0048653 - anther development, GO:0009409 - response to cold, GO:0016209 - antioxidant activity, GO:0043069 - negative regulation of programmed cell death, GO:0006631 - fatty acid metabolic process, GO:0042542 - response to hydrogen peroxide, GO:0042335 - cuticle development, GO:0010229 - inflorescence development, GO:0005739 - mitochondrion	TO:0002657 - oxidative stress, TO:0000180 - spikelet fertility, TO:0000455 - seed set percent, TO:0000657 - spikelet anatomy and morphology trait, TO:0000187 - anther color, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait	PO:0009066 - anther , PO:0009005 - root , PO:0009006 - shoot system , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0000003 - whole plant , PO:0001004 - anther development stage , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0020103 - flag leaf , PO:0009051 - spikelet , PO:0009047 - stem , PO:0025034 - leaf , PO:0020104 - leaf sheath 
10343	CBSDUF2	OsCBSDUF2	_	cystathionine b-synthase domain containing protein OsCBSDUF2, CBS domain containing protein OsCBSDUF2	_		3	Proteins classified in this CBSDUF subgroup contain a DUF21 domain at the N-terminus, along with a CBS domain. CBSDUF for proteins containing one CBS domain and a DUF domain. O. barthii: OBART03G29240, O. brachyantha: OB03G36640, O. glaberrima: ORGLA03G0270900, O. rufipogon: ORUFI03G30380, O. punctata: OPUNC03G26710, O. nivara: ONIVA03G30450, O. meridionalis: OMERI03G25510, O. longistaminata: KN539376.1_FGP002, O. sativa indica: BGIOSGA013305, O. glumaepatula: OGLUM03G29470.	 Tolerance and resistance - Stress tolerance	Os03g0674300	LOC_Os03g47120.1				GO:0005886 - plasma membrane, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
10344	CBSDUF3	OsCBSDUF3, OsSTA88	_	cystathionine b-synthase domain containing protein OsCBSDUF3, CBS domain containing protein OsCBSDUF3	_		3	Proteins classified in this CBSDUF subgroup contain a DUF21 domain at the N-terminus, along with a CBS domain. a mature anther-preferentially expressed gene. CBSDUF for proteins containing one CBS domain and a DUF domain. O. brachyantha: OB03G11990, O. glaberrima: ORGLA03G0017900, O. punctata: OPUNC03G01830, O. nivara: ONIVA03G01670, O. meridionalis: OMERI03G01920, O. longistaminata: KN538922.1_FGP007, O. sativa indica: BGIOSGA011758, O. glumaepatula: OGLUM03G02000.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0125800	LOC_Os03g03430.1						PO:0009066 - anther 
10345	CBSPPR1	OsCBSPPR1	_	cystathionine b-synthase domain containing protein OsCBSPPR1, CBS domain containing protein OsCBSPPR1	_		9	This CBSPPR subgroup is composed of a single gene encoding for a single protein, containing a pentatricopeptide repeat (PPR) motif and a CBS domain. CBSPPR for proteins containing one CBS and a PPR domain. O. barthii: OBART09G11240, O. brachyantha: OB09G17770, O. glaberrima: ORGLA09G0083900, O. rufipogon: ORUFI09G12030, O. punctata: OPUNC09G09700, O. nivara: ONIVA09G10970, O. meridionalis: OMERI09G08760, O. longistaminata: KN538802.1_FGP030, O. sativa indica: BGIOSGA030810, O. glumaepatula: OGLUM09G11610.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0431600	LOC_Os09g26190.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
10346	CBSIMPDH1	OsCBSIMPDH1, OsCBSIMPDH1a, OsCBSIMPDH1b, IMPDH, OsIMPDH	_	cystathionine b-synthase domain containing protein OsCBSIMPDH1, CBS domain containing protein OsCBSIMPDH1, IMP dehydrogenase	_		3	Proteins containing inosine-5'-monophosphate dehydrogenase (IMPDH) domain (PF00478) along with CBS domain has been classified in this CBSIMPDH subgroup. CBSIMPDH for proteins containing one CBS domain along with an IMPDH domain. O. barthii: OBART03G36230, O. brachyantha: OB03G43120, O. glaberrima: ORGLA03G0332100, O. rufipogon: ORUFI03G37690, O. punctata: OPUNC03G33230, O. nivara: ONIVA10G12680, O. meridionalis: OMERI03G33460, O. longistaminata: KN538718.1_FGP015, O. sativa indica: BGIOSGA013663, O. glumaepatula: OGLUM03G35940. PO:0030123: panicle inflorescence.	 Biochemical character	Os03g0780500	LOC_Os03g56800.2, LOC_Os03g56800.1				GO:0003938 - IMP dehydrogenase activity		PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0020103 - flag leaf , PO:0020104 - leaf sheath , PO:0000003 - whole plant , PO:0009089 - endosperm , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0009006 - shoot system , PO:0009009 - plant embryo 
10347	CBSCBS2	OsCBSCBS2	_	cystathionine b-synthase domain containing protein OsCBSCBS2, CBS domain containing protein OsCBSCBS2	_		1	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified. CBSCBS nomenclature was given to the proteins containing only two CBS domains. O. barthii: OBART01G42110, O. brachyantha: OB01G50980, O. glaberrima: ORGLA01G0361100, O. rufipogon: ORUFI01G45460, O. punctata: OPUNC01G41000, O. nivara: ONIVA01G47250, O. meridionalis: OMERI01G39130, O. longistaminata: KN538700.1_FGP089, O. sativa indica: BGIOSGA000232, O. glumaepatula: OGLUM01G46320.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0921500	LOC_Os01g69240.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0009505 - plant-type cell wall, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
10348	CBSCBS3	OsCBSCBS3	_	cystathionine b-synthase domain containing protein OsCBSCBS3, CBS domain containing protein OsCBSCBS3	_		4	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified. CBSCBS nomenclature was given to the proteins containing only two CBS domains. O. barthii: OBART04G10160, O. brachyantha: OB04G17440, O. glaberrima: ORGLA04G0072300, O. rufipogon: ORUFI04G11190, O. punctata: OPUNC04G08200, O. nivara: ONIVA04G07900, O. meridionalis: OMERI04G09350, O. longistaminata: KN539457.1_FGP003, O. sativa indica: BGIOSGA015211, O. glumaepatula: OGLUM04G09770.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0382300	LOC_Os04g31340.1				GO:0009505 - plant-type cell wall, GO:0009651 - response to salt stress, GO:0003824 - catalytic activity, GO:0008152 - metabolic process	TO:0006001 - salt tolerance	
10349	CBSCBS4	OsCBSCBS4, OsCBSCBS4a, OsCBSCBS4b, OsCBSCBS4c, OsCBSCBS4d, OsCBSCBS4e, CBSCBSCBD2, OsCBSCBSCBD2	_	cystathionine b-synthase domain containing protein OsCBSCBS4, CBS domain containing protein OsCBSCBS4	_		4	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified. Putative activator subunit of SNF1-related protein kinase SNF4. AJ575236. CBSCBSCBD for proteins containing two CBS domains and one CBD domain. CBSCBSCBD2 in Tomar et al. 2022. O. barthii: OBART04G11280, O. glaberrima: ORGLA04G0082300, O. rufipogon: ORUFI04G12420, O. punctata: OPUNC04G09270, O. nivara: ONIVA04G09180, O. meridionalis: OMERI04G09790, O. longistaminata: KN540832.1_FGP004, O. sativa indica: BGIOSGA015167, O. glumaepatula: OGLUM04G10930.	 Seed,  Biochemical character	Os04g0401300	LOC_Os04g32880.5, LOC_Os04g32880.4, LOC_Os04g32880.1, LOC_Os04g32880.2, LOC_Os04g32880.3				GO:0008152 - metabolic process, GO:0003824 - catalytic activity	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
10350	CBSCBS5	OsCBSCBS5, CBSX7, OsCBSX7	_	cystathionine b-synthase domain containing protein OsCBSCBS5, CBS domain containing protein OsCBSCBS5	_		1	In CBSCBS subgroup, proteins containing only two CBSdomains have been classified. CBSX for proteins containing only a single CBS domain. CBSCBS nomenclature was given to the proteins containing only two CBS domains. CBSX7 in Tomar et al. 2022. O. barthii: OBART01G42010, O. brachyantha: OB01G50800, O. glaberrima: ORGLA01G0359900, O. rufipogon: ORUFI01G45370, O. punctata: OPUNC01G40900, O. nivara: ONIVA01G47160, O. meridionalis: OMERI01G39010, O. longistaminata: KN538700.1_FGP054, O. sativa indica: BGIOSGA000236, O. glumaepatula: OGLUM01G46190.	 Tolerance and resistance - Stress tolerance	Os01g0920000	LOC_Os01g69090.1				GO:0009651 - response to salt stress, GO:0005773 - vacuole	TO:0006001 - salt tolerance	
10351	CBSCBSPB1	OsCBSCBSPB1	_	cystathionine b-synthase domain containing protein OsCBSCBSPB1, CBS domain containing protein OsCBSCBSPB1	_		1	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain. CBSCBSPB for proteins containing two CBS domains and one PB1 domain. O. barthii: OBART01G42210, O. brachyantha: OB01G51130, O. glaberrima: ORGLA01G0362200, O. rufipogon: ORUFI01G45630, O. punctata: OPUNC01G30700, O. nivara: ONIVA01G48290, O. meridionalis: OMERI01G39240, O. longistaminata: AMDW01119939.1_FGP001, O. sativa indica: BGIOSGA005080, O. glumaepatula: OGLUM01G46480.	 Biochemical character	Os01g0923300	LOC_Os01g69900.1				GO:0003824 - catalytic activity, GO:0008152 - metabolic process		
10352	CBSCBSPB2	OsCBSCBSPB2	_	cystathionine b-synthase domain containing protein OsCBSCBSPB2, CBS domain containing protein OsCBSCBSPB2	_		11	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain. CBSCBSPB for proteins containing two CBS domains and one PB1 domain. O. barthii: OBART11G04430, O. brachyantha: OB11G13640, O. glaberrima: ORGLA11G0041900, O. rufipogon: ORUFI11G04310, O. punctata: OPUNC11G04060, O. nivara: ONIVA11G04460, O. meridionalis: OMERI11G03910, O. longistaminata: KN538712.1_FGP055, O. sativa indica: BGIOSGA034423, O. glumaepatula: OGLUM11G04170.		Os11g0170300	LOC_Os11g06930.1						
10353	CBSCBSPB3	OsCBSCBSPB3	_	cystathionine b-synthase domain containing protein OsCBSCBSPB3, CBS domain containing protein OsCBSCBSPB3	_		1	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain. CBSCBSPB for proteins containing two CBS domains and one PB1 domain. O. barthii: OBART01G44640, O. brachyantha: OB01G53940, O. glaberrima: ORGLA01G0384500, O. rufipogon: ORUFI01G48120, O. punctata: OPUNC01G43690, O. nivara: ONIVA01G50810, O. meridionalis: OMERI01G41500, O. longistaminata: KN541465.1_FGP002, O. sativa indica: BGIOSGA005225, O. glumaepatula: OGLUM01G49030.	 Biochemical character	Os01g0961200	LOC_Os01g73040.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity		
10354	CBSCBSPB4	OsCBSCBSPB4	_	cystathionine b-synthase domain containing protein OsCBSCBSPB4, CBS domain containing protein OsCBSCBSPB4	_		12	These CBSCBSPB proteins contain Phox/Bemp1 (PB1) domain along with the CBS domain. BF889471. CBSCBSPB for proteins containing two CBS domains and one PB1 domain. O. barthii: OBART12G04230, O. brachyantha: OB12G14180, O. glaberrima: ORGLA12G0039900, O. rufipogon: ORUFI12G04820, O. punctata: OPUNC12G04290, O. nivara: ONIVA12G03900, O. meridionalis: OMERI12G02390, O. longistaminata: KN538717.1_FGP087, O. sativa indica: BGIOSGA036554, O. glumaepatula: OGLUM12G05000.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0169400	LOC_Os12g07190.1				GO:0003824 - catalytic activity, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0008152 - metabolic process	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance	
10355	NAC10	ONAC010, ONAC10, OsSTA199, OsNAC3, NAC3	NAC DOMAIN-CONTAINING PROTEIN 10	NAC domain-containing protein 010, Grain Protein Content 2 homolog, GPC-B2 homolog, NAC domain-containing protein 10	NAC DOMAIN-CONTAINING PROTEIN 10		7	a mature anther-preferentially expressed gene. OsNAP-like protein. a candidate gene for GWi7.1. TO:0000975: grain width. OsNAC3 in Zhao et al. 2021.	 Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance	Os07g0566500	LOC_Os07g37920.1				GO:0051607 - defense response to virus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000148 - viral disease resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000020 - black streak dwarf virus resistance	PO:0009066 - anther 
10356	HCT1	OsHCT1	HYDROXYCINNAMOYLTRANSFERASE 1	Hydroxycinnamoyltransferase 1, hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 1	HYDROXYCINNAMOYLTRANSFERASE 1		4	GI=115459249	 Biochemical character	Os04g0500700	LOC_Os04g42250.2, LOC_Os04g42250.3, LOC_Os04g42250.4				GO:0009807 - lignan biosynthetic process	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
10357	HCT2	OsHCT2, HCT	HYDROXYCINNAMOYLTRANSFERASE 2	Hydroxycinnamoyltransferase 2, hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 2	HYDROXYCINNAMOYLTRANSFERASE 2		2	GI=115447256. HCT in Kishi-Kaboshi et al. 2018. OsCaM1 target gene.	 Biochemical character	Os02g0611800	LOC_Os02g39850.1				GO:0009807 - lignan biosynthetic process	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
10358	HCT3	OsHCT3, Os-PHT1, OsPHT1, PHT1	HYDROXYCINNAMOYLTRANSFERASE 3	Hydroxycinnamoyltransferase 3, putrescine hy- droxycinnamoyl transferase 1	HYDROXYCINNAMOYLTRANSFERASE 3		6	GI=115466797. KX430016. LOC_Os06g08580.	 Biochemical character	Os06g0184900	LOC_Os06g08580.1						
10359	HCT4	OsHCT4	HYDROXYCINNAMOYLTRANSFERASE 4	Hydroxycinnamoyltransferase 4	HYDROXYCINNAMOYLTRANSFERASE 4		6	GI=115466807	 Biochemical character	Os06g0185500	LOC_Os06g08640.1						
10360	SH1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1	SHATTERING1	YABBY2, YABBY 2, OsYABBY2, Os YABBY2, Shattering1, Shattering 1, FIL homolog 2	PROTEIN YABBY 2		3	Q10FZ7. AB274014. AF098753. homolog of sorghum SH1. YAB family TF gene. a shattering-related YABBY transcription factor.	 Seed - Physiological traits - Shattering,  Other	Os03g0650000	LOC_Os03g44710.3, LOC_Os03g44710.2, LOC_Os03g44710.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus		PO:0009038 - palea , PO:0009037 - lemma 
10361	YAB3	OsYAB3, OsYAB4, TOB3	YABBY3	YABBY 3, OsYABBY3, Os YABBY3, TONGARI-BOUSHI 3, TONGARI-BOUSHI3	PROTEIN YABBY 3		10	Q8L556. AB274015. OsYAB4 in Dai et al. 2007.	 Vegetative organ - Leaf,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0508300	LOC_Os10g36420.1				GO:0010229 - inflorescence development, GO:0005634 - nucleus, GO:0010158 - abaxial cell fate specification, GO:0010154 - fruit development, GO:0046872 - metal ion binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0025487 - bract primordium , PO:0009051 - spikelet 
10362	YAB4	OsYAB4, OsYAB7, TOB2	YABBY4	YABBY 4, OsYABBY4, Os YABBY4, TONGARI-BOUSHI 2, TONGARI-BOUSHI2	PROTEIN YABBY 4	osyab4	2	Q6H668. AB274016. OsYAB7 in Dai et al. 2007.	 Other,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0643200	LOC_Os02g42950.1, LOC_Os02g42950.2				GO:0010229 - inflorescence development, GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0046872 - metal ion binding	TO:0000621 - inflorescence development trait	PO:0009051 - spikelet , PO:0025487 - bract primordium , PO:0001083 - inflorescence development stage 
10363	YAB6	OsYAB6, OsYAB5	YABBY6	YABBY 6, OsYABBY6, Os YABBY6	PROTEIN YABBY 6		12	Q2QM17. AB274018. OsYAB5 in Dai et al. 2007. GO:0099402: plant organ development.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Other	Os12g0621100	LOC_Os12g42610.1				GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0007045 - coleoptile emergence stage , PO:0009037 - lemma , PO:0009038 - palea , PO:0007057 - 0 seed germination stage 
10364	YAB7	OsYAB7	YABBY7	YABBY 7, OsYABBY7, Os YABBY7	PROTEIN YABBY 7		7	A2PZN8. AB274019.	 Other	Os07g0571800	LOC_Os07g38410.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus		PO:0009037 - lemma , PO:0009038 - palea 
10365	CHI3	gh1, GH1, OsGH1, OsCHI, Cfi, CHI, OsCHI3	CHALCONE ISOMERASE 3	gold hull and internode 1, chalcone isomerase, chalcone flavonone isomerase, chalcone-flavonone isomerase	CHALCONE ISOMERASE 3	gh1	3	Q84T92. AF474922. lodging resistance. TO:0001109: grain color trait.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Biochemical character,  Seed,  Seed - Morphological traits,  Coloration - Others,  Tolerance and resistance - Insect resistance	Os03g0819600	LOC_Os03g60509.2, LOC_Os03g60509.1				GO:0009416 - response to light stimulus, GO:0009814 - defense response, incompatible interaction, GO:0009718 - anthocyanin biosynthetic process, GO:0045430 - chalcone isomerase activity, GO:0009809 - lignin biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0048316 - seed development, GO:0009628 - response to abiotic stimulus, GO:0002213 - defense response to insect, GO:0009411 - response to UV	TO:0000396 - grain yield, TO:0000160 - UV light sensitivity, TO:0000075 - light sensitivity, TO:0000071 - anthocyanin content, TO:0000707 - pericarp color, TO:0000675 - ferulic acid content, TO:0000424 - brown planthopper resistance, TO:0000653 - seed development trait, TO:0000494 - pigment content, TO:0000534 - culm color, TO:0000168 - abiotic stress trait, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000051 - stem strength, TO:0000290 - flavonoid content	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0025034 - leaf 
10366	KAT1	OsKAT1, OsKAT3	SHAKER POTASSIUM CHANNEL 1	shaker potassium channel OsKAT1	_		1	Q5JM04. rice homolog of Shaker family K1 channel KAT1. inward rectifying shaker-like potassium channel. OsKAT3 in Musavizadeh et al. 2021.	 Tolerance and resistance - Stress tolerance	Os01g0756700	LOC_Os01g55200.1				GO:0010118 - stomatal movement, GO:0007623 - circadian rhythm, GO:0016021 - integral to membrane, GO:0009644 - response to high light intensity, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0005249 - voltage-gated potassium channel activity	TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009006 - shoot system 
10367	KAT2	OsKAT2	SHAKER POTASSIUM CHANNEL 2	shaker potassium channel OsKAT2	_		1	Q5QNI1. inward rectifying shaker-like potassium channel. OsKAT2 may be a functional ortholog of AtKAT1. GO:1990069: stomatal opening.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0210700	LOC_Os01g11250.1				GO:0005886 - plasma membrane, GO:0050891 - multicellular organismal water homeostasis, GO:0009644 - response to high light intensity, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0005249 - voltage-gated potassium channel activity, GO:0010118 - stomatal movement, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0000293 - guard cell , PO:0009006 - shoot system , PO:0009005 - root 
10368	KAT3	OsKAT3, OsKAT1, KAT1	SHAKER POTASSIUM CHANNEL 3	shaker potassium channel OsKAT3	_		2	inward rectifying shaker-like potassium channel. OsKAT1 in Musavizadeh et al. 2021, Tian et al. 2024.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0245800	LOC_Os02g14840.1				GO:0009409 - response to cold, GO:0009644 - response to high light intensity, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0005249 - voltage-gated potassium channel activity, GO:0007623 - circadian rhythm, GO:0010118 - stomatal movement, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
10369	AKT1	OsAKT1, Os-AKT1	_	salt-sensitive K1 uptake channel OsAKT1, K+ channel alpha subunit, shaker potassium channel AKT1	_	Os-akt1, akt1-1, akt1-2, osakt1, osakt1-4, osakt1-8	1	AY065970. P0C550. Q0JKV1. GO:0097369: sodium ion import. GO:0010107: potassium ion import. GO:1904383: response to sodium phosphate.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0648000	LOC_Os01g45990.1				GO:0016021 - integral to membrane, GO:0055078 - sodium ion homeostasis, GO:0009651 - response to salt stress, GO:0009860 - pollen tube growth, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0005249 - voltage-gated potassium channel activity, GO:0006970 - response to osmotic stress, GO:0005886 - plasma membrane, GO:0051607 - defense response to virus, GO:0042594 - response to starvation, GO:0048767 - root hair elongation, GO:0055075 - potassium ion homeostasis, GO:0030001 - metal ion transport, GO:0006995 - cellular response to nitrogen starvation	TO:0000609 - potassium content, TO:0001034 - relative plant height, TO:0000527 - sodium uptake, TO:0000514 - potassium uptake, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0006001 - salt tolerance, TO:0000011 - nitrogen sensitivity, TO:0000608 - sodium content, TO:0000095 - osmotic response sensitivity, TO:0000513 - potassium concentration, TO:0000526 - sodium concentration, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0025181 - root elongation zone , PO:0009010 - seed 
10370	AKT2	OsAKT2, ZMK2, OsZMK2, OsK3.1, K3.1	_	salt-sensitive K1 uptake channel OsAKT2, Potassium channel protein ZMK2, shaker potassium channel AKT2	_	osakt2, cr-osakt2-1, cr-osakt2-2	5	JN989970. Q75HP9. GO:1904180: negative regulation of membrane depolarization. GO:0071805: potassium ion transmembrane transport. GO:0110126: phloem loading. TO:0000975: grain width. TO:1000036: root system potassium content. PO:0030104: caryopsis fruit. GO:0003254: regulation of membrane depolarization. GO:1904982: sucrose transmembrane transport.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os05g0428700	LOC_Os05g35410.1				GO:0055078 - sodium ion homeostasis, GO:0009651 - response to salt stress, GO:0009915 - phloem loading, GO:0015770 - sucrose transport, GO:0005249 - voltage-gated potassium channel activity, GO:0006813 - potassium ion transport, GO:0005886 - plasma membrane, GO:0051899 - membrane depolarization, GO:0040007 - growth, GO:0033993 - response to lipid, GO:0070300 - phosphatidic acid binding, GO:0019932 - second-messenger-mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0042391 - regulation of membrane potential, GO:0016021 - integral to membrane, GO:0055075 - potassium ion homeostasis	TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0002730 - grain shape, TO:0000609 - potassium content, TO:0000514 - potassium uptake, TO:0000479 - acid sensitivity, TO:0000527 - sodium uptake, TO:0000040 - panicle length, TO:0000328 - sucrose content, TO:0006001 - salt tolerance, TO:0000449 - grain yield per plant, TO:0000399 - grain thickness, TO:0000447 - filled grain number, TO:0000576 - stem length, TO:0000590 - grain weight, TO:0000516 - relative root length, TO:0001016 - relative chlorophyll content, TO:0000515 - relative growth rate, TO:0000608 - sodium content, TO:0000525 - sodium to potassium content ratio, TO:0000153 - relative yield, TO:0000591 - 100-dehulled grain weight, TO:0000734 - grain length, TO:0020003 - shoot potassium content	PO:0009006 - shoot system , PO:0020142 - stem internode , PO:0025034 - leaf , PO:0009005 - root , PO:0005417 - phloem , PO:0020103 - flag leaf , PO:0020104 - leaf sheath 
10371	_	OsARP, OsCTP	_	antiporter regulating protein, antiporter-regulating protein, cation transporter, cation transport protein, pistil extensin like protein	_		2	AB112061. AU095352, AU031408.	 Tolerance and resistance - Stress tolerance	Os02g0465900	LOC_Os02g26700.1, LOC_Os02g26700.2, LOC_Os02g26700.3, LOC_Os02g26700.4, LOC_Os02g26700.6, LOC_Os02g26700.7, LOC_Os02g26700.8, LOC_Os02g26700.9				GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion	TO:0000432 - temperature response trait	
10372	MIL1 	MIL1, mil1	MICROSPORELESS 1	MICROSPORELESS1, microsporeless1	CC-TYPE GLUTAREDOXIN	mil1, MIL1	7	a plant-specific CC-type glutaredoxin. JN417767. the ortholog of maize MSCA1.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0151100	LOC_Os07g05630.1				GO:0009055 - electron carrier activity, GO:0045836 - positive regulation of meiosis, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
10374	AM1	OsAM1, SWI1, Osam1	AMEIOTIC 1	AMEIOTIC1	_	Osam1, Osam1-1, Osam1-2	3	a homolog of Arabidopsis SWI1 and maize AM1.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0650400	LOC_Os03g44760.1, LOC_Os03g44760.2, LOC_Os03g44760.3, LOC_Os03g44760.4, LOC_Os03g44760.5				GO:0007128 - meiotic prophase I, GO:0007126 - meiosis		
10375	HSP23.7	OsHsp23.7, OsHSP23.7	23.7 KDA HEAT SHOCK PROTEIN	23.7 kDa heat shock protein	23.7 KDA HEAT SHOCK PROTEIN		12		 Tolerance and resistance - Stress tolerance	Os12g0569700	LOC_Os12g38180.1				GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
10376	MIS2	OsCR4, CR4, OsMIS2	MINI SEED 2	CRINKLY4, rice CRINKLY4 orthologue, CR4 ortholog	CRINKLY4 RECEPTOR-LIKE KINASE	mis2	3	BAB68389, AB057787. Crinkly4 receptor-like kinase. TO:0000816: inflorescence bract anatomy and morphology trait. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os03g0637800	LOC_Os03g43670.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0051302 - regulation of cell division, GO:0005886 - plasma membrane, GO:0001558 - regulation of cell growth, GO:0005768 - endosome	TO:0000397 - grain size, TO:0000734 - grain length, TO:0002730 - grain shape, TO:0000399 - grain thickness, TO:0000240 - sterile lemma length, TO:0000657 - spikelet anatomy and morphology trait, TO:0000455 - seed set percent, TO:0000621 - inflorescence development trait, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000592 - 1000-dehulled grain weight, TO:0006022 - floral organ development trait	PO:0001083 - inflorescence development stage 
10377	CRR1	OsCRR1	CRINKLY4-RELATED PROTEIN 1	CRINKLY4-RELATED protein 1	CRINKLY4-RELATED PROTEIN 1		4	Crinkly4 receptor-like kinase. CAE03130, AL606452.2 (complement of bases 72163-74631).		Os04g0439600	LOC_Os04g35890.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10378	CRR2	OsCRR2	CRINKLY4-RELATED PROTEIN 2	CRINKLY4-RELATED protein 2	CRINKLY4-RELATED PROTEIN 2		8	Crinkly4 receptor-like kinase. BAD09531, AP004584.3 (bases 80615-83125).		Os08g0109800	LOC_Os08g01830.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
10379	CCR3	OsCRR3	CRINKLY4-RELATED PROTEIN 3	CRINKLY4-RELATED protein 3	CRINKLY4-RELATED PROTEIN 3		5	Crinkly4 receptor-like kinase. AC129720.2 (bases 81114-83507). up-regulated after fertilization (Abiko et al. 2013).		Os05g0127300	LOC_Os05g03620.1				GO:0005524 - ATP binding, GO:0009790 - embryonic development, GO:0004674 - protein serine/threonine kinase activity		
10380	CRR4	OsCRR4	CRINKLY4-RELATED PROTEIN 4	CRINKLY4-RELATED protein 4	CRINKLY4-RELATED PROTEIN 4		11	Crinkly4 receptor-like kinase. AC123524.2 (complement of bases 90800-88365).		Os11g0222000	LOC_Os11g11490.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10382	PGIP6	Ospgip6, pgip6, OsPGIP6	POLYGALACTURONASE-INHIBITING PROTEIN 6	Polygalacturonase-inhibiting protein 6, polygalacturonase inhibiting protein 6	POLYGALACTURONASE-INHIBITING PROTEIN 6		8	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. putative DNA-damage- repair/toleration protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0505900	LOC_Os08g39550.1				GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0002238 - response to molecule of fungal origin, GO:0006952 - defense response	TO:0000203 - bacterial leaf streak disease resistance, TO:0000439 - fungal disease resistance, TO:0000303 - cold tolerance	
10383	PGIP7	Ospgip7, pgip7, OsPGIP7	POLYGALACTURONASE-INHIBITING PROTEIN 7	Polygalacturonase-inhibiting protein 7, polygalacturonase inhibiting protein 7	POLYGALACTURONASE-INHIBITING PROTEIN 7		9	leucine-rich repeat (LRR) protein, inhibitor of fungal polygalacturonase. AC108762. EEE69955.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0491612	LOC_Os09g31450.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0006952 - defense response	TO:0000203 - bacterial leaf streak disease resistance	
10384	_	OsTEF1	_	Transcription Elongation Factor 1	_		2		 Vegetative organ - Culm	Os02g0134300	LOC_Os02g04160.1, LOC_Os02g04160.2						
10385	_	OsRGP1, C1RGP	_	reversibly glycosylated polypeptide 1, class 1 OsRGP, class 1 RGP	_												
10386	_	OsRGP2, C2RGP	_	reversibly glycosylated polypeptide 2, class 2 OsRGP, class 2 RGP	_												
10387	LOX1	OsLOX1, OsLOX5, OsLOX2, LOX2	LIPOXYGENASE 1	lipoxygenase 1	LIPOXYGENASE 1	oslox2-1, oslox2-2	2	FJ660617, FJ660618, AP008208 (5279133-5282623). OsLOX5 in Liu et al. 2019. OsLOX2 in Dai et al. 2023, Islam et al. 2023. GO:0098542: defense response to other organism. TO:0020068: beta-glucan content.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Biochemical character	Os02g0194700 	LOC_Os02g10120.1				GO:0002213 - defense response to insect, GO:0005506 - iron ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0031408 - oxylipin biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0016165 - lipoxygenase activity	TO:0000112 - disease resistance, TO:0006007 - polysaccharide content, TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity	
10388	LOX2	OsLOX2, OsLOX6, LOX6	LIPOXYGENASE 2	lipoxygenase 2	LIPOXYGENASE 2		3	FJ660619, FJ660620, AP008209 (4168945-4175326). Q8H016. OsLOX6 in Wang et al. 2023.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os03g0179900	LOC_Os03g08220.1				GO:0016165 - lipoxygenase activity, GO:0009620 - response to fungus, GO:0005506 - iron ion binding, GO:0080086 - stamen filament development, GO:0009733 - response to auxin stimulus, GO:0002215 - defense response to nematode, GO:0009555 - pollen development, GO:0009901 - anther dehiscence, GO:0031408 - oxylipin biosynthetic process	TO:0000384 - nematode damage resistance, TO:0000163 - auxin sensitivity	
10390	SPH	OsLOX6, LOX6, LOX5, OsLOX5	SPLIT-HULL	lipoxygenase 6, split-hull	LIPOXYGENASE 6	sph	4	FJ660627, FJ660628, AP008210 (22279716-22283972). Q7XV13. LOX5 in Islam et al. 2023. TO:0000845: collective phyllome structure morphology trait. TO:1000023: lemma morphology trait.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0447100	LOC_Os04g37430.1				GO:0005506 - iron ion binding, GO:0048573 - photoperiodism, flowering, GO:0031408 - oxylipin biosynthetic process, GO:0016165 - lipoxygenase activity	TO:0000565 - spikelets per panicle length, TO:0000137 - days to heading, TO:0005001 - linoleic acid content, TO:0005005 - alpha-linolenic acid content, TO:0000731 - lignin content, TO:0000592 - 1000-dehulled grain weight, TO:0000180 - spikelet fertility, TO:0000576 - stem length	
10391	LOX7	OsLOX7, LOX6, OsLOX6	LIPOXYGENASE 7	lipoxygenase 7	LIPOXYGENASE 7		5	FJ660629, FJ660630, AP008211 (13601100-13607113). LOX6 in Islam et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0304600	LOC_Os05g23880.1				GO:0005506 - iron ion binding, GO:0031408 - oxylipin biosynthetic process, GO:0009414 - response to water deprivation, GO:0016165 - lipoxygenase activity	TO:0000276 - drought tolerance	
10392	LOX8	OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2, OsLOX1, CM-LOX8	LIPOXYGENASE 8	lipoxygenase 8, lipoxygenase 9	LIPOXYGENASE 8		8	FJ660632 (indica, OsLOX8), FJ660633 (japonica, OsLOX9), AP008214 (25209131-25216838). Q84YK8. OsLOX8 and  OsLOX9 in Marla and Singh 2012. OsLOX2;3 in Kobayashi se al. 2016, Aung et al. 2018. OsLOX2 in Cheng et al. 2019, Kong et al. 2021, Liu et al. 2022. OsLOX1 in He et al. 2016. CM-LOX8 in Islam et al. 2023.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0509100 	LOC_Os08g39850.2, LOC_Os08g39850.3, LOC_Os08g39850.4, LOC_Os08g39850.1				GO:0050832 - defense response to fungus, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0009695 - jasmonic acid biosynthetic process, GO:0016165 - lipoxygenase activity, GO:0002215 - defense response to nematode, GO:0031408 - oxylipin biosynthetic process, GO:0010106 - cellular response to iron ion starvation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0009753 - response to jasmonic acid stimulus, GO:0009266 - response to temperature stimulus	TO:0000020 - black streak dwarf virus resistance, TO:0000102 - phosphorus sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000432 - temperature response trait, TO:0000224 - iron sensitivity, TO:0000074 - blast disease, TO:0000384 - nematode damage resistance	
10393	LOX10	OsLOX10, OsLOX3, LOX3	LIPOXYGENASE 10	lipoxygenase 10, lipoxygenase 3	LIPOXYGENASE 10		11	FJ660635, FJ660636, AP008217 (20820998-20830730). EU146294, EU700314. OsLOX3 (in Fig1, Fig2, body text) and OsLOX10 (in Table1, Table3) in Marla and Singh 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0575600	LOC_Os11g36719.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0016165 - lipoxygenase activity, GO:0048364 - root development, GO:0009409 - response to cold, GO:0031408 - oxylipin biosynthetic process	TO:0000303 - cold tolerance	
10394	LOX11	OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2, LOX2.1, OsLOX2.1, OsLOX14, LOX14	LIPOXYGENASE 11	lipoxygenase 11, lipoxygenase 12, rice chemically induced cDNA 1, BPH-inducible gene 252, Brown planthopper-inducible gene 252, Lipoxygenase 2.1	LIPOXYGENASE 11	oslox14	12	FJ660638, FJ667775, FJ667776. AP008218 (22888253-22893842). CAC01439. AJ270938. EU513009. OsBphi252 is tightly linked to Bph1.  OsLOX11 (FJ660638, FJ667775) and  OsLOX12 (FJ667776) in Marla and Singh 2012. Lipoxygenase 2.1 in Sudo et al. 2008. OsLOX2.2 in Ma et al. 2018. LOX2.1 in Islam et al. 2023. OsLOX14 in Yang et al. 2024. GO:1900367: positive regulation of defense response to insect.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0559200 	LOC_Os12g37260.1				GO:0005506 - iron ion binding, GO:0010597 - green leaf volatile biosynthetic process, GO:0009611 - response to wounding, GO:0002213 - defense response to insect, GO:0046688 - response to copper ion, GO:0031408 - oxylipin biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009695 - jasmonic acid biosynthetic process, GO:0051607 - defense response to virus, GO:0016165 - lipoxygenase activity, GO:0006952 - defense response	TO:0000148 - viral disease resistance, TO:0000179 - biotic stress trait, TO:0000021 - copper sensitivity, TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance	
10395	LOX12	OsLOX12	LIPOXYGENASE 12	lipoxygenase 12	LIPOXYGENASE 12		12	FJ667775, AP008218 (22968459-22970460).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0560200	LOC_Os12g37350.1				GO:0005506 - iron ion binding, GO:0016165 - lipoxygenase activity, GO:0031408 - oxylipin biosynthetic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
10396	DRM2	OsDRM2, osdrm2, DRM2-1	DOMAINS REARRANGED METHYLTRANSFERASE 2	domains rearranged methyltransferase 2, domains rearranged methylase 2	DOMAINS REARRANGED METHYLTRANSFERASE 2	osdrm2, osdrm2-1b, osdrm2-1c, osdrm2-1d, osdrm2-2a, osdrm2-2b, drm2, osdrm2-2	3	AB524355. CT860708. DNA methyltransferase. homologous to animal Dnmt3. DRM2-1 in Li et al. 2017. GO:0080188: RNA-directed DNA methylation. GO:1903705: positive regulation of siRNA production.	 Reproductive organ - Heading date,  Vegetative organ - Culm,  Biochemical character,  Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os03g0110800	LOC_Os03g02010.4				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0006306 - DNA methylation, GO:0051567 - histone H3-K9 methylation, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0010425 - DNA methylation on cytosine within a CNG sequence, GO:0046686 - response to cadmium ion, GO:0006346 - methylation-dependent chromatin silencing, GO:0008168 - methyltransferase activity	TO:0000346 - tiller number, TO:0000262 - panicle shape, TO:0002616 - flowering time, TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000485 - sterility related trait, TO:0000657 - spikelet anatomy and morphology trait	
10397	DRM1A	OsDRM1a	DOMAINS REARRANGED METHYLTRANSFERASE 1A	domains rearranged methyltransferase 1a, domains rearranged methylase 1a	DOMAINS REARRANGED METHYLTRANSFERASE 1A	Osdrm3	11	AB524356.	 Biochemical character	Os11g0109200/Os11g0109301	LOC_Os11g01810.1				GO:0006306 - DNA methylation, GO:0003677 - DNA binding, GO:0008168 - methyltransferase activity		
10398	DRM1B	OsDRM1b	DOMAINS REARRANGED METHYLTRANSFERASE 1B	domains rearranged methyltransferase 1b, domains rearranged methylase 1b	DOMAINS REARRANGED METHYLTRANSFERASE 1B	Osdrm1b	12		 Biochemical character	Os12g0108900	LOC_Os12g01800.1				GO:0003677 - DNA binding, GO:0008168 - methyltransferase activity, GO:0006306 - DNA methylation		
10399	DRM3	OsDRM3, DRM2-2	DOMAINS REARRANGED METHYLTRANSFERASE 3	domains rearranged methyltransferase 3, domains rearranged methylase 3	DOMAINS REARRANGED METHYLTRANSFERASE 3	Osdrm3	5	DRM2-2 in Li et al. 2017.	 Biochemical character	Os05g0133900	LOC_Os05g04330.1, LOC_Os05g04330.2				GO:0008168 - methyltransferase activity		
10400	CMT1	OsCMT1, OsCMT3b, CMT3b	CHROMOMETHYLTRANSFERASE 1	chromomethyltransferase 1, chromomethylase 3b, CHG methyltransferase 3b	CHROMOMETHYLTRANSFERASE 1	oscmt3b, cmt3b	3	AB360584. the orthologs of ZMET2 and ZMET5. OsCMT3b in Cheng et al. 2015, Hu et al. 2021, Li et al. 2024. OsCMT3b might not play a major role in maintaining CHG methylation (Cheng et al. 2015). GO:0090116 C-5 methylation of cytosine. GO:0044726: epigenetic programing of female pronucleus. GO:0090309: positive regulation of DNA methylation-dependent heterochromatin formation. 	 Biochemical character	Os03g0226800/Os03g0226901	LOC_Os03g12570.1				GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0006346 - methylation-dependent chromatin silencing, GO:0006306 - DNA methylation, GO:0003677 - DNA binding, GO:0008168 - methyltransferase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009008 - DNA-methyltransferase activity, GO:0009555 - pollen development, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0005634 - nucleus, GO:0010425 - DNA methylation on cytosine within a CNG sequence		PO:0006204 - sporocyte , PO:0001007 - pollen development stage , PO:0020048 - microspore , PO:0025121 - pollen sperm cell 
10401	CMT2	OsCMT2, OsCMT3a, CMT3a	CHROMOMETHYLTRANSFERASE 2	chromomethyltransferase 2, chromomethylase 3a, CHG methyltransferase 3a	CHROMOMETHYLTRANSFERASE 2	oscmt3a, oscmt3a-1, oscmt3a-2, cmt3a	10	AB360583  OsCMT3a in Cheng et al. 2015, Wang et al. 2018, Hu et al. 2021, Li et al. 2024. a functional orthologue of ZMET2 and CMT3. the orthologs of ZMET2 and ZMET5. GO:0090116 C-5 methylation of cytosine. 	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Biochemical character	Os10g0104900	LOC_Os10g01570.1				GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0003677 - DNA binding, GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0005634 - nucleus, GO:0010425 - DNA methylation on cytosine within a CNG sequence, GO:0051567 - histone H3-K9 methylation, GO:0070895 - negative regulation of transposon integration, GO:0006342 - chromatin silencing, GO:0032776 - DNA methylation on cytosine, GO:0032502 - developmental process, GO:0009294 - DNA mediated transformation, GO:0010069 - zygote asymmetric cytokinesis in the embryo sac, GO:0032196 - transposition, GO:0009008 - DNA-methyltransferase activity, GO:0009555 - pollen development, GO:0006306 - DNA methylation, GO:0006346 - methylation-dependent chromatin silencing, GO:0046686 - response to cadmium ion	TO:0000357 - growth and development trait, TO:0000485 - sterility related trait, TO:0000421 - pollen fertility	PO:0000423 - plant zygote , PO:0020094 - plant egg cell , PO:0001007 - pollen development stage 
10402	CMT3	OsCMT3, CMT3-1, CMT2, OsCMT2	CHROMOMETHYLTRANSFERASE 3	chromomethyltransferase 3, CHROMOMETHYLASE2	CHROMOMETHYLTRANSFERASE 3	Oscmt2	5	GO:0090116 C-5 methylation of cytosine. LOC_Os05g13790. CMT3-1 and CMT3 in Li et al. 2017. OsCMT2 in Hu et al. 2021.	 Biochemical character	Os05g0224900	LOC_Os05g13780.1, LOC_Os05g13790.1				GO:0003886 - DNA (cytosine-5-)-methyltransferase activity, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10403	DNMT2	OsDNMT2, OsDnmt2	DNA METHYLTRANSFERASE 2	DNA methyltransferase 2	DNA METHYLTRANSFERASE 2		1		 Biochemical character	Os01g0612000	LOC_Os01g42630.1, LOC_Os01g42630.2, LOC_Os01g42630.3				GO:0003677 - DNA binding, GO:0006306 - DNA methylation		
10404	SHAT1	OsSHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5, DLN124, OsDLN124, ObSHAT1, OgSHAT1, OrSHAT1	SHATTERING ABORTION 1	SHATTERING ABORTION1, shattering abortion 1, APETALA2/ethylene-responsive element binding protein 43, APETALA2-5, DLN repressor 124, DLN motif protein 124	_	shat1	4	FO082280. an APETALA2 transcription factor. AP2 family TF gene. AP2-5 in Dai et al. 2016. TO:0000930: seed shattering.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Shattering	Os04g0649100	LOC_Os04g55560.4, LOC_Os04g55560.3, LOC_Os04g55560.2				GO:0003677 - DNA binding, GO:0051409 - response to nitrosative stress, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000473 - grain shattering	
10405	CAM1-3	OsCam1-3, OsCaM1-3, CAM1	CALMODULIN 1-3	Calmodulin 1-3, calmodulin 1	CALMODULIN 1-3		1	Q0JNS6. CAM1 in Zhang et al. 2013.	 Biochemical character	Os01g0267900	LOC_Os01g16240.1				GO:0010099 - regulation of photomorphogenesis, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005509 - calcium ion binding, GO:0019722 - calcium-mediated signaling, GO:0005516 - calmodulin binding, GO:0009846 - pollen germination		
10406	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6	18.0-KD CLASS I HEAT SHOCK PROTEIN	18.0 kDa class I heat shock protein, 18.0 kDa heat shock protein, 18.0-kD class I heat shock protein, multiple stress responsive gene 3, small heat shock protein 20	18.0-KD CLASS I HEAT SHOCK PROTEIN 		3	small heat shock protein. Class-I Low-Molecular-Mass Heat-Shock Protein. U83670. X75616. Q84Q72. FJ383169. OsSHSP1 in Ham et al. 2013. OsHSP20 in Li et al. 2015, Guo et al. 2020. OsHSP18.6 in Qiu et al. 2015. TO:0020092: copper content trait.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0267000	LOC_Os03g16030.1				GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0046688 - response to copper ion, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0046685 - response to arsenic, GO:0046686 - response to cadmium ion, GO:0042542 - response to hydrogen peroxide, GO:0045471 - response to ethanol, GO:0009615 - response to virus, GO:0010045 - response to nickel ion, GO:0010288 - response to lead ion, GO:0032025 - response to cobalt ion, GO:0010038 - response to metal ion, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000430 - germination rate, TO:0000207 - plant height, TO:0000020 - black streak dwarf virus resistance, TO:0000413 - rice tungro virus resistance, TO:0002667 - abscisic acid content, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000148 - viral disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000203 - bacterial leaf streak disease resistance, TO:0000496 - carotenoid content, TO:0000021 - copper sensitivity, TO:0000016 - cobalt sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000495 - chlorophyll content, TO:0000227 - root length, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	
10407	HSP18.0-CIII	OsHSP18.0-CIII	18.0-KD CLASS III HEAT SHOCK PROTEIN	18.0 kDa class III heat shock protein, 18.0-kD class III heat shock protein	18.0-KD CLASS III HEAT SHOCK PROTEIN 		2	Q6K7E9.	 Tolerance and resistance - Stress tolerance	Os02g0782500	LOC_Os02g54140.1				GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0009644 - response to high light intensity, GO:0006457 - protein folding, GO:0042542 - response to hydrogen peroxide	TO:0000259 - heat tolerance	
10408	HSP17.4-CI	OsHSP17.4-CI	17.4-KD CLASS I HEAT SHOCK PROTEIN	17.4-kD class I heat shock protein	17.4-KD CLASS I HEAT SHOCK PROTEIN				 Tolerance and resistance - Stress tolerance						GO:0009408 - response to heat		
10409	ERF92	OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78	ETHYLENE RESPONSE FACTOR 92	ethylene response factor 922, ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 922, ethylene response factor 92, APETALA2/ethylene-responsive element binding protein 78, Ethylene responsive factor 922	ETHYLENE RESPONSE FACTOR 92		1	LOC_Os01g54890. AP2 transcription factor. OsERF922 in Wang et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0752500	LOC_Os01g54890.1				GO:0003700 - transcription factor activity, GO:0009635 - response to herbicide, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000058 - herbicide sensitivity, TO:0006001 - salt tolerance	
10411	_	OsRTH1, RTH1	_	Reversion-To-ethylene Sensitivity1 homologue 1	_		1	LOC_Os01g51430. Green-ripe (GR) related protein.		Os01g0711600	LOC_Os01g51430.1				GO:0048366 - leaf development, GO:0048830 - adventitious root development, GO:0009723 - response to ethylene stimulus, GO:0010150 - leaf senescence, GO:0009873 - ethylene mediated signaling pathway	TO:0000173 - ethylene sensitivity, TO:0000249 - leaf senescence	
10412	_	OsRTH2, RTH2	_	Reversion-To-ethylene Sensitivity1 homologue 2	_		5	LOC_Os05g46240. Green-ripe (GR) related protein. AAV59409.		Os05g0539800	LOC_Os05g46240.1, LOC_Os05g46240.2, LOC_Os05g46240.3, LOC_Os05g46240.4				GO:0005783 - endoplasmic reticulum, GO:0010105 - negative regulation of ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0005794 - Golgi apparatus		
10413	_	OsRTH3, RTH3	_	Reversion-To-ethylene Sensitivity1 homologue 3	_		3	LOC_Os03g58520. Green-ripe (GR) related protein. AAO37528.		Os03g0799500	LOC_Os03g58520.1						
10415	CHR705	chr705, OsCHR705	CHROMATIN REMODELING FACTOR 705	CHD-related gene 705, chromatin remodeling factor 705	CHROMATIN REMODELING FACTOR 705		7	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0660200	LOC_Os07g46590.1				GO:0016887 - ATPase activity, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0042393 - histone binding, GO:0009651 - response to salt stress, GO:0006338 - chromatin remodeling, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0003676 - nucleic acid binding, GO:0004386 - helicase activity, GO:0009414 - response to water deprivation, GO:0000785 - chromatin	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
10416	PKL	CHR702, chr702, OsCHR702	PICKLE	CHD-related gene 702, chromatin remodeling factor 702			6	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0183800	LOC_Os06g08480.1				GO:0000785 - chromatin, GO:0003682 - chromatin binding, GO:0009414 - response to water deprivation, GO:0016887 - ATPase activity, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0050832 - defense response to fungus, GO:0042393 - histone binding	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
10417	HFP	OsHFP	HEMOPEXIN FOLD PROTEIN	hemopexin fold protein	HEMOPEXIN FOLD PROTEIN		4	CAE03710. an anther-specific protein. JX233809.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Coloration - Chlorophyll	Os04g0213100	LOC_Os04g13540.1				GO:0046872 - metal ion binding		
10418	MSP	OsSub42, SUB42, OsSP2, OS-MSP, OsMSP	MEIOTIC SERINE PROTEINASE-LIKE PROTEIN	Serine protease 2, Subtilisin 42, SUBTILISIN 42, meiotic serine proteinase-like protein	MEIOTIC SERINE PROTEINASE-LIKE PROTEIN		4	subtilisin-like serine protease. panicle-specific gene. AY683198. AY644644. Similar to tomato meiotic serine proteinase. AU065677, AU030354. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0543700	LOC_Os04g45960.1				GO:0043086 - negative regulation of catalytic activity, GO:0006508 - proteolysis, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity, GO:0016020 - membrane	TO:0000432 - temperature response trait, TO:0000723 - microsporocyte development trait	
10419	MORE1I	XYH, OsMORE1i	MAGNAPORTHE ORYZAE RESISTANCE 1I	Magnaporthe oryzae resistance 1i	_		5	early seed-specific gene.	 Tolerance and resistance - Disease resistance	Os05g0298700	LOC_Os05g23350.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0043169 - cation binding, GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process	TO:0000074 - blast disease	PO:0009010 - seed 
10420	NOMT	OsNOMT, COMTL3, OsCOMTL3, OsCOMT29, COMT29	NARINGENIN 7-O-METHYLTRANSFERASE	naringenin 7-O-methyltransferase, CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 3, Caffeic Acid O-Methyltransferase 29	NARINGENIN 7-O-METHYLTRANSFERASE	osnomt, osnomt-2, osnomt-3	12	AB692949. Q0IP69. metabolite: Sakuranetin.	 Tolerance and resistance,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os12g0240900	LOC_Os12g13810.1, LOC_Os12g13800.1				GO:0051555 - flavonol biosynthetic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0002238 - response to molecule of fungal origin, GO:0009741 - response to brassinosteroid stimulus, GO:0033799 - myricetin 3'-O-methyltransferase activity, GO:0030755 - quercetin 3-O-methyltransferase activity, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0002213 - defense response to insect, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0009809 - lignin biosynthetic process, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0009716 - flavonoid phytoalexin biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000172 - jasmonic acid sensitivity, TO:0000236 - crop damage resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000290 - flavonoid content, TO:0000179 - biotic stress trait, TO:0000477 - panicle blast disease resistance, TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance, TO:0000317 - cutworm resistance, TO:0000074 - blast disease	PO:0009049 - inflorescence , PO:0025034 - leaf 
10421	COM1	OsCOM1	COMPLETION OF MEIOSIS 1	Completion of Meiosis 1, completion of meiotic recombination 1, COM1/SAE2 homolog	_	Oscom1, Oscom1-1, Oscom1-2, Oscom1-3, Oscom1-4, com1	6	the homolog of COM1/SAE2 in S. cerevisiae.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0613400	LOC_Os06g41050.1				GO:0000706 - meiotic DNA double-strand break processing, GO:0000724 - double-strand break repair via homologous recombination		
10422	RACK1	RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A	RECEPTOR FOR ACTIVATED C-KINASE 1	q group of receptor for activated C-kinase, GTP-binding regulatory protein beta chain, receptor for activated C kinase 1, Receptor for Activated C-kinase 1	RECEPTOR FOR ACTIVATED C-KINASE 1		1	D38231. P49027. D22687, D15480. WD repeat containing receptor, RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0686800	LOC_Os01g49290.1				GO:0022626 - cytosolic ribosome, GO:0005783 - endoplasmic reticulum, GO:0009408 - response to heat, GO:0070301 - cellular response to hydrogen peroxide, GO:0009738 - abscisic acid mediated signaling, GO:0050832 - defense response to fungus, GO:0051776 - detection of redox state, GO:0048367 - shoot development, GO:0006952 - defense response, GO:0009873 - ethylene mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009648 - photoperiodism, GO:0007623 - circadian rhythm, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0005730 - nucleolus, GO:0004871 - signal transducer activity, GO:0060267 - positive regulation of respiratory burst, GO:0009845 - seed germination, GO:0048364 - root development, GO:0046686 - response to cadmium ion, GO:0009507 - chloroplast, GO:0002238 - response to molecule of fungal origin, GO:0002679 - respiratory burst during defense response	TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000371 - yield trait, TO:0000229 - photoperiod sensitivity, TO:0002667 - abscisic acid content, TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000173 - ethylene sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000129 - false smut disease resistance	PO:0009046 - flower 
10423	SIK1	OsSIK1, OsER2, ER2, OsERL, ERL	STRESS INDUCED PROTEIN KINASE 1	ERECTA 2, ER-LIKE			6	GQ423058, AY332474. Receptor-like kinase (RLK). a rice homolog of Arabidopsis ERCTA (ER). PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os06g0130100	LOC_Os06g03970.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009047 - stem , PO:0009029 - stamen , PO:0009051 - spikelet , PO:0025034 - leaf 
10424	PHO1;1	OsPHO1;1	PHOSPHATE TRANSPORTER 1;1			Ospho1;1, Ospho1;1-1, Ospho1;1-2	1	Q657S5. Pi homeostasis. TO:0020089: iron content.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0110100	LOC_Os01g02000.1				GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation, GO:0000822 - inositol hexakisphosphate binding, GO:0005802 - trans-Golgi network, GO:0005886 - plasma membrane, GO:0005794 - Golgi apparatus, GO:0005737 - cytoplasm, GO:0015114 - phosphate transmembrane transporter activity, GO:0034756 - regulation of iron ion transport	TO:0000102 - phosphorus sensitivity	
10425	PHO1;2	OsPHO1;2, PHO1.2, OsPHO1.2, PHO1	PHOSPHATE TRANSPORTER 1;2	PHOSPHATE1;2, PHOSPHATE1.2		Ospho1;2, Ospho1;2-ko1, Ospho1;2-ko2, Ospho1;2-ko3, Ospho1;2-ko4, Ospho1;2-ko5, Ospho1;2-ko6, Ospho1;2-ko7, Ospho1;2-ko8	2	Q6K991. Root-to-shoot Pi transfer. PHO1 in Wang et al. 2020. TO:0020102: phosphate content. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed,  Biochemical character	Os02g0809800	LOC_Os02g56510.1				GO:0010233 - phloem transport, GO:0016036 - cellular response to phosphate starvation, GO:0010431 - seed maturation, GO:0055062 - phosphate ion homeostasis, GO:0006817 - phosphate transport, GO:0005802 - trans-Golgi network, GO:0006799 - polyphosphate biosynthetic process, GO:0048016 - inositol phosphate-mediated signaling, GO:0015114 - phosphate transmembrane transporter activity, GO:0042594 - response to starvation, GO:0005886 - plasma membrane, GO:0000822 - inositol hexakisphosphate binding, GO:0005794 - Golgi apparatus, GO:0005737 - cytoplasm, GO:0016021 - integral to membrane, GO:0046685 - response to arsenic	TO:0000653 - seed development trait, TO:0000396 - grain yield, TO:0000019 - seedling height, TO:0000102 - phosphorus sensitivity	PO:0020003 - plant ovule , PO:0005020 - vascular bundle , PO:0009005 - root , PO:0005004 - shoot node , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009049 - inflorescence , PO:0009084 - pericarp , PO:0007632 - seed maturation stage , PO:0006000 - caryopsis hull , PO:0009010 - seed , PO:0008006 - nucellar epidermis 
10426	PHO1;3	OsPHO1;3, OsPHT1	PHOSPHATE TRANSPORTER 1;3	Phosphate transporter 1			6	Q651J5. Pi homeostasis.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0493600	LOC_Os06g29790.1				GO:0015114 - phosphate transmembrane transporter activity, GO:0005794 - Golgi apparatus, GO:0005737 - cytoplasm, GO:0000822 - inositol hexakisphosphate binding, GO:0005802 - trans-Golgi network, GO:0005886 - plasma membrane, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
10427	PHO1;3 CIS-NAT	OsPHO1;3 cis-NAT	PHOSPHATE TRANSPORTER 1;3 CIS-NATURAL ANTISENSE TRANSCRIPT				6	Pi homeostasis	 Biochemical character	Os06g0493700							
10428	PHO1;2 CIS-NAT	OsPHO1;2 cis-NAT, cis-NAT PHO1;2, cisNATpho1.2, cis-NATpho1.2	PHOSPHATE TRANSPORTER 1;2 CIS-NATURAL ANTISENSE TRANSCRIPT	noncoding antisense RNA of PHO1.2			2	Pi homeostasis	 Biochemical character	Os02g0809700							
10429	PHO1;1 CIS-NAT	OsPHO1;1 cis-NAT	PHOSPHATE TRANSPORTER 1;1 CIS-NATURAL ANTISENSE TRANSCRIPT				1	Pi homeostasis	 Biochemical character	Os01g0110050							
10430	CAD1	OsCAD1	CINNAMYL ALCOHOL DEHYDROGENASE 1	Cinnamyl alcohol dehydrogenase 1	CINNAMYL-ALCOHOL DEHYDROGENASE 1		10	Q8H859. GO:0052747:sinapyl alcohol dehydrogenase activity. no detectable catalytic activity. lacks the GxxxxP motif for NADPH binding.	 Biochemical character	Os10g0194200	LOC_Os10g11810.3, LOC_Os10g11810.2, LOC_Os10g11810.1				GO:0000166 - nucleotide binding, GO:0009809 - lignin biosynthetic process, GO:0009808 - lignin metabolic process, GO:0044036 - cell wall macromolecule metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0055114 - oxidation reduction, GO:0008270 - zinc ion binding		
10432	CAD3	OsCAD3	CINNAMYL ALCOHOL DEHYDROGENASE 3	Cinnamyl alcohol dehydrogenase 3	CINNAMYL-ALCOHOL DEHYDROGENASE 3		10	Q337Y2. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os10g0430200	LOC_Os10g29470.1				GO:0044036 - cell wall macromolecule metabolic process, GO:0009808 - lignin metabolic process, GO:0055114 - oxidation reduction, GO:0009626 - plant-type hypersensitive response, GO:0009617 - response to bacterium, GO:0048046 - apoplast, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0009809 - lignin biosynthetic process	TO:0000733 - lignin biosynthesis trait	
10433	CAD4	OsCAD4	CINNAMYL ALCOHOL DEHYDROGENASE 4	Cinnamyl alcohol dehydrogenase 4	CINNAMYL-ALCOHOL DEHYDROGENASE 4		11	LOC_Os11g40690. Q2R114. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os11g0622800	LOC_Os11g40690.1				GO:0055114 - oxidation reduction, GO:0009808 - lignin metabolic process, GO:0009809 - lignin biosynthetic process, GO:0044036 - cell wall macromolecule metabolic process, GO:0008270 - zinc ion binding, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0000166 - nucleotide binding, GO:0048037 - cofactor binding		
10434	CAD5	OsCAD5	CINNAMYL ALCOHOL DEHYDROGENASE 5	Cinnamyl alcohol dehydrogenase 5	CINNAMYL-ALCOHOL DEHYDROGENASE 5		8	Q0J6T3. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os08g0270400	LOC_Os08g16910.1				GO:0009809 - lignin biosynthetic process, GO:0044036 - cell wall macromolecule metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0009626 - plant-type hypersensitive response, GO:0009617 - response to bacterium, GO:0048046 - apoplast, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0055114 - oxidation reduction, GO:0009808 - lignin metabolic process		
10435	CAD6	OsCAD6	CINNAMYL ALCOHOL DEHYDROGENASE 6	Cinnamyl alcohol dehydrogenase 6	CINNAMYL-ALCOHOL DEHYDROGENASE 6		4	Q7XWU3. GO:0052747:sinapyl alcohol dehydrogenase activity. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0229100	LOC_Os04g15920.1				GO:0009808 - lignin metabolic process, GO:0008270 - zinc ion binding, GO:0009809 - lignin biosynthetic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0055114 - oxidation reduction, GO:0044036 - cell wall macromolecule metabolic process, GO:0042742 - defense response to bacterium, GO:0009411 - response to UV, GO:0010266 - response to vitamin B1, GO:0009698 - phenylpropanoid metabolic process, GO:0000166 - nucleotide binding	TO:0000175 - bacterial blight disease resistance, TO:0000160 - UV light sensitivity	PO:0009047 - stem , PO:0020104 - leaf sheath 
10436	CAD8A	OsCAD8A	CINNAMYL ALCOHOL DEHYDROGENASE 8A	Cinnamyl alcohol dehydrogenase 8A	CINNAMYL-ALCOHOL DEHYDROGENASE 8A		9	Q6ERX1. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0399800	LOC_Os09g23530.1				GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0009809 - lignin biosynthetic process, GO:0055114 - oxidation reduction, GO:0044036 - cell wall macromolecule metabolic process, GO:0009808 - lignin metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0009626 - plant-type hypersensitive response, GO:0009617 - response to bacterium, GO:0048046 - apoplast, GO:0018456 - aryl-alcohol dehydrogenase activity		
10437	CAD8B	OsCAD8B	CINNAMYL ALCOHOL DEHYDROGENASE 8B	Cinnamyl alcohol dehydrogenase 8B	CINNAMYL-ALCOHOL DEHYDROGENASE 8B		9	LOC_Os09g23540. Q6ERW9. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0400000	LOC_Os09g23540.1				GO:0009626 - plant-type hypersensitive response, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0044036 - cell wall macromolecule metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0009808 - lignin metabolic process, GO:0009617 - response to bacterium, GO:0055114 - oxidation reduction, GO:0048046 - apoplast, GO:0009809 - lignin biosynthetic process		
10438	CAD8C	OsCAD8C, CAD8c	CINNAMYL ALCOHOL DEHYDROGENASE 8C	Cinnamyl alcohol dehydrogenase 8C	CINNAMYL-ALCOHOL DEHYDROGENASE 8C		9	LOC_Os09g23550. Q6ERW7. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0400300	LOC_Os09g23550.1, LOC_Os09g23550.2				GO:0009626 - plant-type hypersensitive response, GO:0055114 - oxidation reduction, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0044036 - cell wall macromolecule metabolic process, GO:0009809 - lignin biosynthetic process, GO:0009808 - lignin metabolic process, GO:0000166 - nucleotide binding, GO:0009617 - response to bacterium, GO:0008270 - zinc ion binding, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0048046 - apoplast	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
10439	CAD8D	OsCAD8D	CINNAMYL ALCOHOL DEHYDROGENASE 8D	Cinnamyl alcohol dehydrogenase 8D	CINNAMYL-ALCOHOL DEHYDROGENASE 8D		9	Q6ERW5. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os09g0400400	LOC_Os09g23560.1				GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0009626 - plant-type hypersensitive response, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0044036 - cell wall macromolecule metabolic process, GO:0009617 - response to bacterium, GO:0055114 - oxidation reduction, GO:0048046 - apoplast, GO:0009808 - lignin metabolic process, GO:0009809 - lignin biosynthetic process		
10440	CAD9	OsCAD9	CINNAMYL ALCOHOL DEHYDROGENASE 9	Cinnamyl alcohol dehydrogenase 9	CINNAMYL-ALCOHOL DEHYDROGENASE 9		3	Q10PS6. GO:0052747:sinapyl alcohol dehydrogenase activity.	 Biochemical character	Os03g0223200	LOC_Os03g12270.1				GO:0008270 - zinc ion binding, GO:0048046 - apoplast, GO:0009809 - lignin biosynthetic process, GO:0000166 - nucleotide binding, GO:0018456 - aryl-alcohol dehydrogenase activity, GO:0009617 - response to bacterium, GO:0009626 - plant-type hypersensitive response, GO:0055114 - oxidation reduction, GO:0009808 - lignin metabolic process, GO:0045551 - cinnamyl-alcohol dehydrogenase activity, GO:0044036 - cell wall macromolecule metabolic process		
10441	COMTL1	OsCOMTL1, OsCOMT27, COMT27	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 1	Caffeic Acid O-Methyltransferase 27	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 1		12		 Biochemical character	Os12g0199500	LOC_Os12g09770.1				GO:0032259 - methylation, GO:0005737 - cytoplasm, GO:0008171 - O-methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0019438 - aromatic compound biosynthetic process		
10442	COMTL2	OsCOMTL2, OsCOMT3, COMT3	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 2	Caffeic Acid O-Methyltransferase 3	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 2		4	miR160b-3p-target.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0104900	LOC_Os04g01470.1				GO:0009414 - response to water deprivation, GO:0009411 - response to UV, GO:0009507 - chloroplast, GO:0008171 - O-methyltransferase activity	TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity	PO:0009049 - inflorescence , PO:0009047 - stem 
10444	COMTL4	OsCOMTL4, COMT2, OsCOMT2	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 4	caffeic acid O-methyltransferase 2	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 4		2	COMT2 in Koshiba et al. 2013, Liang et al. 2022. metabolite: Trigonelline. SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0823400	LOC_Os02g57760.1				GO:0008171 - O-methyltransferase activity, GO:0009807 - lignan biosynthetic process, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0044272 - sulfur compound biosynthetic process	TO:0000276 - drought tolerance, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	PO:0009005 - root , PO:0009047 - stem 
10445	COMTL5	OsCOMTL5, OsCOMT4, COMT4	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 5	Caffeic Acid O-Methyltransferase 4	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 5		4	an indole glucosinolate O- methyltransferase. SCC (sulfur-containing compound) biosynthetic gene. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0175600	LOC_Os04g09604.1				GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity	TO:0006001 - salt tolerance	PO:0009047 - stem 
10446	COMTL6	OsCOMTL6, OsCOMT5, COMT5	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 6	Caffeic Acid O-Methyltransferase 5	CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 6		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0175900	LOC_Os04g09654.2, LOC_Os04g09654.1				GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0008171 - O-methyltransferase activity	TO:0000276 - drought tolerance	
10447	PIM	Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km	PYRICULARIA ORYZAE RESISTANCE M	Pyricularia oryzae resistance m, Magnaporthe grisea resistance-m, Blast resistance m			11	resistant to several races of Pyricularia grisea. [RGN12:19].  Original line is Minehikari (Japonica).  Pi-m was renamed Pi-km as a Pi-k allele (Kiyosawa 1978). PO:0009025; leaf. GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000504 - leaf temperature, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
10448	LMS	OsLMS	LESION MIMIC AND SENESCENCE			lms	2	LMS gene encodes a protein with a catalytic CTD phosphatase domain and two double stranded RNA binding motifs (dsRBM). GO:0070940: dephosphorylation of RNA polymerase II C-terminal domain.	 Tolerance and resistance - Lesion mimic	Os02g0639000	LOC_Os02g42600.1				GO:0008420 - CTD phosphatase activity, GO:0017018 - myosin phosphatase activity, GO:0005634 - nucleus, GO:0003723 - RNA binding	TO:0000063 - mimic response	
10449	-	OsCPL1, CPL1	-	C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 1			4	putative Arabidopsis FIERY2/CPL1 homolog.		Os04g0529500	LOC_Os04g44710.1, LOC_Os04g44710.2						
10450	-	OsCPL2, CPL2	-	C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 2			1	putative Arabidopsis CPL2 homolog.		Os01g0857000	LOC_Os01g63820.1, LOC_Os01g63820.2						
10451	HSF26	OsHsf26	HEAT STRESS TRANSCRIPTION FACTOR 26	Heat stress transcription factor 26	HEAT STRESS TRANSCRIPTION FACTOR 26		6	Os06g22610.	 Tolerance and resistance - Stress tolerance								
10452	IAA23	OsIAA23	AUX/IAA PROTEIN 23	Aux/IAA protein 23, Auxin-responsive Aux/IAA gene family member 23	AUX/IAA PROTEIN 23	Osiaa23, Osiaa23-2, Osiaa23-3, Osiaa23-R5	6	Q69VE0. Osiaa23-R5 (one of the six intragenic suppressors of an auxin insensitive mutant, Osiaa23)	 Tolerance and resistance - Stress tolerance	Os06g0597000	LOC_Os06g39590.1, LOC_Os06g39590.2				GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0048364 - root development, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000656 - root development trait	PO:0009005 - root , PO:0007520 - root development stage 
10453	IAA20	OsIAA20	AUX/IAA PROTEIN 20	Aux/IAA protein 20, Indoleacetic Acid-Induced 20	AUX/IAA PROTEIN 20		6	Q5VRR0. BAF18829.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0166500	LOC_Os06g07040.1				GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009629 - response to gravity, GO:0009408 - response to heat, GO:0009723 - response to ethylene stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051607 - defense response to virus, GO:0006351 - transcription, DNA-dependent	TO:0000163 - auxin sensitivity, TO:0002693 - gravity response trait, TO:0000259 - heat tolerance, TO:0000173 - ethylene sensitivity, TO:0000020 - black streak dwarf virus resistance	PO:0000016 - lateral root primordium 
10454	CRLL1	OsCrll1, OsLBD3-1, LBD3-1, CRL1L1	CRL1-LIKE 1	Crl1-like 1, lateral organ boundaries domain 3-1	CRL1-LIKE 1		3	AB200235.		Os03g0149000	LOC_Os03g05500.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009755 - hormone-mediated signaling, GO:0005634 - nucleus		
10455	CRLL2	OsCrll2, Crll2, CRL1L2	CRL1-LIKE 2	Crl1-like 2	CRL1-LIKE 2		10	AB200236.		Os10g0162600	LOC_Os10g07510.1				GO:0005634 - nucleus, GO:0009755 - hormone-mediated signaling, GO:0045893 - positive regulation of transcription, DNA-dependent		
10456	IG1	CRL1L3, CRLL3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2	INDETERMINATE GAMETOPHYTE 1	Crl1-like 3, indeterminate gametophyte1, lateral organ boundaries domain 1-9, ASYMMETRIC LEAVES2, ASYMMETRIC LEAVES 2			1	AB200237. Q8LQH4. rice orthologue of maize IG1. a LBD-like gene. TO:0000869: glume anatomy and morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf	Os01g0889400	LOC_Os01g66590.1, LOC_Os01g66590.2, LOC_Os01g66590.3				GO:0048437 - floral organ development, GO:0005634 - nucleus, GO:0009561 - megagametogenesis, GO:0009553 - embryo sac development, GO:0007275 - multicellular organismal development	TO:0000206 - leaf angle, TO:0006038 - floral organ number, TO:0006022 - floral organ development trait, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0009038 - palea , PO:0007621 - megagametophyte development stage , PO:0004001 - bulliform cell , PO:0009039 - glume , PO:0025279 - megagametophyte 
10458	IAA3	OsIAA3	AUX/IAA PROTEIN 3	Aux/IAA protein 3	AUX/IAA PROTEIN 3		1		 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os01g0231000 	LOC_Os01g13030.2, LOC_Os01g13030.1				GO:0009734 - auxin mediated signaling pathway, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus	TO:0000734 - grain length, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	
10460	EDS1	OsEDS1	ENHANCED DISEASE SUSCEPTIBILITY 1	enhanced disease susceptibility 1, ENHANCED DISEASE SUSCEPTIBILITY1, Arabidopsis EDS1 homolog		oseds1	9	rice homolog of AtEDS1. GO:1903285: positive regulation of hydrogen peroxide catabolic process. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance	Os09g0392100	LOC_Os09g22450.1				GO:0004806 - triacylglycerol lipase activity, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0009617 - response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006629 - lipid metabolic process, GO:0002213 - defense response to insect, GO:0009814 - defense response, incompatible interaction, GO:0009408 - response to heat, GO:0042744 - hydrogen peroxide catabolic process	TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000315 - bacterial disease resistance, TO:0000424 - brown planthopper resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000153 - relative yield	
10461	PAD4	OsPAD4	PHYTOALEXIN DEFICIENT 4	phytoalexin deficient 4			11	CX118864. a rice ortholog of Arabidopsis phytoalexin deficient 4 (AtPAD4). TO:0020093: nitrogen content.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Biochemical character	Os11g0195500	LOC_Os11g09010.3, LOC_Os11g09010.2, LOC_Os11g09010.1				GO:0002213 - defense response to insect, GO:0010618 - aerenchyma formation, GO:0006629 - lipid metabolic process, GO:0005886 - plasma membrane, GO:0009617 - response to bacterium, GO:0009693 - ethylene biosynthetic process, GO:0009609 - response to symbiotic bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009611 - response to wounding, GO:0004806 - triacylglycerol lipase activity, GO:0042742 - defense response to bacterium	TO:0000424 - brown planthopper resistance, TO:0002668 - jasmonic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0002670 - momilactone A content, TO:0000175 - bacterial blight disease resistance	
10462	ICS1	OsICS1, OsICS, ICS	ISOCHORISMATE SYNTHASE 1	isochorismate synthase 1, ISOCHORISMATE SYNTHASE1	ISOCHORISMATE SYNTHASE 1	Osics1	9	GO:0071731: response to nitric oxide.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os09g0361500	LOC_Os09g19734.1, LOC_Os09g19734.2				GO:0008909 - isochorismate synthase activity, GO:0009627 - systemic acquired resistance, GO:0002213 - defense response to insect, GO:0031348 - negative regulation of defense response, GO:0051607 - defense response to virus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009697 - salicylic acid biosynthetic process, GO:0010118 - stomatal movement, GO:0042372 - phylloquinone biosynthetic process, GO:0009536 - plastid, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000020 - black streak dwarf virus resistance, TO:0000175 - bacterial blight disease resistance, TO:0000424 - brown planthopper resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000476 - growth hormone content, TO:0000148 - viral disease resistance	
10463	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6	PHENYLALANINE AMMONIA-LYASE 1	phenylalanine ammonia-lyase 1, phenylalanine ammonia lyase	PHENYLALANINE AMMONIA-LYASE 1	ospal4	2	Q0DZE0. X87946. A2X7F7. D41931. KF556681. OsPAL, OsPAL2 in Rakwal et al. 2009. OsPAL2 in Hayashiet al. 2014. OsPAL4 in Tonnessen et al. 2014, Wang et al. 2017, Zhou et al. 2018, Filipe et al. 2018, Bai et al. 2019, Sathe et al. 2019, Wu et al. 2019, Dong et al. 2020, Zhou et al. 2021, He et al. 2020, Singh et al. 2021, Wang et al. 2021, Wu et al. 2022, Yang et al. 2022, Wang et al. 2022, Wang et al. 2021, Huang et al. 2023, Ning et al. 2023, Ding et al. 2023. OsPAL6 in Yang et al. 2016. TO:0001109: grain color trait. GO:0140426: PAMP-triggered immunity signalling pathway.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits,  Vegetative organ - Leaf,  Tolerance and resistance,  Biochemical character,  Tolerance and resistance - Insect resistance,  Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance	Os02g0627100	LOC_Os02g41680.1	GR:0060593			GO:0009751 - response to salicylic acid stimulus, GO:0009635 - response to herbicide, GO:0046688 - response to copper ion, GO:0005737 - cytoplasm, GO:0006559 - L-phenylalanine catabolic process, GO:0002213 - defense response to insect, GO:0010332 - response to gamma radiation, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0009800 - cinnamic acid biosynthetic process, GO:0032355 - response to estradiol stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0002238 - response to molecule of fungal origin, GO:0010229 - inflorescence development, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0009697 - salicylic acid biosynthetic process, GO:0009609 - response to symbiotic bacterium, GO:0010200 - response to chitin, GO:0002215 - defense response to nematode, GO:0009718 - anthocyanin biosynthetic process	TO:0000255 - sheath blight disease resistance, TO:0000674 - phytochemical compound content, TO:0000074 - blast disease, TO:0000421 - pollen fertility, TO:0000175 - bacterial blight disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000071 - anthocyanin content, TO:0000401 - plant growth hormone sensitivity, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000664 - fungal blight disease resistance, TO:0000021 - copper sensitivity, TO:0000315 - bacterial disease resistance, TO:0000424 - brown planthopper resistance, TO:0000326 - leaf color, TO:0000384 - nematode damage resistance, TO:0000058 - herbicide sensitivity	PO:0009005 - root , PO:0001083 - inflorescence development stage 
10464	PLT1	OsPLT1, AP2/EREBP#044, AP2/EREBP44, AINTEGUMENTA, OsAINTEGUMENTA	PLETHORA 1	Plethora 1, APETALA2/ethylene-responsive element binding protein 44	PLETHORA 1		4	GO:1990110: callus formation.	 Other	Os04g0653600	LOC_Os04g55970.1, LOC_Os04g55970.2				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000428 - callus induction	
10465	PLT2	OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6	PLETHORA 2	Plethora 2, APETALA2/ethylene-responsive element binding protein 60, Hairy Leaf 6	PLETHORA 2		6	HQ858843. AP2-EREBP transcription factor. GO:2000039: regulation of trichome morphogenesis. TO:0000748: leaf morphology trait. GO:1990110: callus formation.	 Other,  Vegetative organ - Leaf	Os06g0657500	LOC_Os06g44750.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0010090 - trichome morphogenesis, GO:0006351 - transcription, DNA-dependent	TO:0000428 - callus induction	
10466	PLT3	OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2	PLETHORA 3	Plethora 3, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 18, BABY BOOM2, BABY BOOM 2	PLETHORA 3	bbm2	2		 Seed - Morphological traits - Embryo,  Other	Os02g0614300	LOC_Os02g40070.1				GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000345 - seed viability	PO:0000423 - plant zygote 
10467	PLT4	OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4	PLETHORA 4	Plethora 4, APETALA2/ethylene-responsive element binding protein 37, BABY BOOM4, BABY BOOM 4	PLETHORA  4		4		 Other	Os04g0504500	LOC_Os04g42570.1						PO:0000084 - plant sperm cell 
10468	PLT5	OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1	PLETHORA 5	Plethora 5, APETALA2/ethylene-responsive element binding protein 5, BABY BOOM3, BABY BOOM 3	PLETHORA 5	bbm3	1	BBM3 in Khanday et al. 2019, Rahman et al. 2019, Chahal et al. 2022. GO:1990110: callus formation. ortholog of Arabidopsis BBM.	 Other,  Seed - Morphological traits - Embryo	Os01g0899800	LOC_Os01g67410.1				GO:0009790 - embryonic development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent	TO:0000345 - seed viability, TO:0000428 - callus induction	PO:0000423 - plant zygote 
10469	PLT6	OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1	PLETHORA 6	Plethora 6, APETALA2/ethylene-responsive element binding protein 118, BABY BOOM1, BABY BOOM 1, Apospory-specific Genome Region-BABY-BOOM LIKE 1, BABY-BOOM LIKE 1	PLETHORA 6	bbm1	11	the rice ortholog of PsASGR-BBML1. a gene in rice zygotes with paternal allele-dependent expression. GO:1990110: callus formation.	 Seed - Morphological traits - Embryo,  Other	Os11g0295900	LOC_Os11g19060.1				GO:0009566 - fertilization, GO:0006351 - transcription, DNA-dependent, GO:0019954 - asexual reproduction, GO:0010262 - somatic embryogenesis, GO:0005634 - nucleus, GO:0051781 - positive regulation of cell division, GO:0051785 - positive regulation of nuclear division, GO:0009790 - embryonic development, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0000345 - seed viability, TO:0000428 - callus induction	PO:0000423 - plant zygote , PO:0000084 - plant sperm cell 
10470	PLT7	OsPLT7, AP2/EREBP#088, AP2/EREBP88	PLETHORA 7	Plethora 7, APETALA2/ethylene-responsive element binding protein 88	PLETHORA 7		3	GO:1990110: callus formation.	 Other	Os03g0770700	LOC_Os03g56050.1				GO:0003700 - transcription factor activity	TO:0000428 - callus induction	
10471	PLT8	OsPLT8, CRL5, OsCRL5, AP2/EREBP141, AP2/EREBP#141	PLETHORA 8	Plethora 8, CROWN ROOTLESS5, APETALA2/ethylene-responsive element binding protein 141, PLETHORA2	PLETHORA 8	crl5	7	PLETHORA2 in Whankaew et al. 2020. likely related to drought and salt stress(Whankaew et al. 2020).	 Other,  Vegetative organ - Root	Os07g0124700	LOC_Os07g03250.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000227 - root length	
10472	PLT10	OsPLT10, AP2/EREBP26, AP2/EREBP#026	PLETHORA 10	Plethora 10, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 26	PLETHORA 10		3	LOC_Os03g07940.	 Other	Os03g0176300	LOC_Os03g07940.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10473	PLT9	OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT	PLETHORA 9	Plethora 9, APETALA2/ethylene-responsive element binding protein 137	PLETHORA 9		3	a rice ANT homolog. GO:1990110: callus formation.	 Other	Os03g0232200	LOC_Os03g12950.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0000428 - callus induction	
10474	RSOSPR10	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10, OsBETV1, BETV1	ROOT-SPECIFIC ORYZA SATIVA PR10	root-specific Oryza sativa PR10, root specific rice PR10, root-specific OsPR10a, Root specific pathogenesis-related protein 10	ROOT-SPECIFIC ORYZA SATIVA PR10		12	AB127580. GQ487631 (promoter), GQ487632 (promoter), GQ487633. GO:0080163: regulation of protein serine/threonine phosphatase activity. OsPR10a in Rawat et al. 2013 and Li et al. 2017. OsPR10 in Kaur et al. 2017, Lin et al. 2018, Moon et al. 2022, Liao et al. 2022. GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os12g0555000 	LOC_Os12g36830.1				GO:0009743 - response to carbohydrate stimulus, GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0004872 - receptor activity, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0010427 - abscisic acid binding, GO:0048364 - root development, GO:0043086 - negative regulation of catalytic activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0052543 - callose deposition in cell wall, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010431 - seed maturation, GO:0009409 - response to cold, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0046688 - response to copper ion, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0002661 - seed maturation, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000129 - false smut disease resistance, TO:0000261 - insect damage resistance, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0007632 - seed maturation stage 
10475	CRK1	OsCRK1, OsCBK, CBK	CDPK-RELATED KINASE 1	CDPK-related kinase 1, Ca2+/calmodulin (CaM)-binding protein kinase, calmodulin-binding kinase	CDPK-RELATED KINASE 1		3	AF368282. Q10KY3. AC125784.	 Biochemical character	Os03g0366200	LOC_Os03g25070.1				GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004683 - calmodulin-dependent protein kinase activity		
10476	CRK2	OsCRK2	CDPK-RELATED KINASE 2	CDPK-related kinase 2	CDPK-RELATED KINASE 2		6	AP004678.	 Biochemical character								
10477	CRK3	OsCRK3	CDPK-RELATED KINASE 3	CDPK-related kinase 3	CDPK-RELATED KINASE 3		7	AP004309, AP004380.	 Biochemical character								
10478	CRK4	OsCRK4	CDPK-RELATED KINASE 4	CDPK-related kinase 4	CDPK-RELATED KINASE 4		7	AP005292, AP004671.	 Biochemical character								
10479	CRK5	OsCRK5	CDPK-RELATED KINASE 5	CDPK-related kinase 5	CDPK-RELATED KINASE 5		10	AE017111, AC087192.	 Biochemical character								
10480	_	OsPEPRK1	_	phosphoenolpyruvate (PEP) carboxylase kinase-related kinase 1			6	AP002838, AP001168.	 Biochemical character								
10481	_	OsPEPRK2	_	phosphoenolpyruvate (PEP) carboxylase kinase-related kinase 2			9	AP005676.	 Biochemical character	Os09g0466900	LOC_Os09g29170.1, LOC_Os09g29170.2, LOC_Os09g29170.3, LOC_Os09g29170.4				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
10482	RBOHI	OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF, OsNOX8, NOX8, OsRboh8, Rboh8	RESPIRATORY BURST OXIDASE HOMOLOG I	respiratory burst oxidase homolog I, NADPH oxidase 8	RESPIRATORY BURST OXIDASE HOMOLOG I		11	ROS-producing NADPH oxidase. ABA94089. OsRbohF in Li et al. 2011. OsRboh8 in Ouyang et al. 2023. GO:1903409: reactive oxygen species biosynthetic process.	 Character as QTL - Germination,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os11g0537400	LOC_Os11g33120.1, LOC_Os11g33120.2, LOC_Os11g33120.3				GO:0005509 - calcium ion binding, GO:0009845 - seed germination, GO:0016174 - NAD(P)H oxidase activity, GO:0022626 - cytosolic ribosome, GO:0050832 - defense response to fungus, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009739 - response to gibberellin stimulus, GO:0043069 - negative regulation of programmed cell death, GO:0004601 - peroxidase activity, GO:0009415 - response to water, GO:0005887 - integral to plasma membrane, GO:0009060 - aerobic respiration, GO:0009413 - response to flooding, GO:0009408 - response to heat, GO:0010053 - root epidermal cell differentiation, GO:0042542 - response to hydrogen peroxide, GO:0043068 - positive regulation of programmed cell death, GO:0033198 - response to ATP, GO:0005773 - vacuole	TO:0000524 - submergence tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000605 - hydrogen peroxide content	PO:0007022 - seed imbibition stage , PO:0006023 - bundle sheath , PO:0009010 - seed , PO:0005360 - aleurone layer , PO:0007057 - 0 seed germination stage 
10483	RBOHC	rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5, RBOHA, OsRboh5, Rboh5	RESPIRATORY BURST OXIDASE HOMOLOG C	Respiratory Burst Oxidase Homolog C, NADPH oxidase 5	RESPIRATORY BURST OXIDASE HOMOLOG C		5	OsrbohD in Yoshie et al. 2005. OsRboh5 in Zhang et al. 2014, Xu et al. 2020, Kim et al. 2019, Xiong et al. 2021. RBOHA in Liu et al. 2019. GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os05g0528000	LOC_Os05g45210.3, LOC_Os05g45210.2, LOC_Os05g45210.1				GO:0009845 - seed germination, GO:0052542 - callose deposition during defense response, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009415 - response to water, GO:0009414 - response to water deprivation, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0043069 - negative regulation of programmed cell death, GO:0010119 - regulation of stomatal movement, GO:0009723 - response to ethylene stimulus, GO:0009413 - response to flooding, GO:0009737 - response to abscisic acid stimulus, GO:0005887 - integral to plasma membrane, GO:0002679 - respiratory burst during defense response, GO:0004601 - peroxidase activity, GO:0005509 - calcium ion binding	TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0000256 - root hair cell , PO:0007022 - seed imbibition stage , PO:0009010 - seed , PO:0007057 - 0 seed germination stage , PO:0005360 - aleurone layer , PO:0006023 - bundle sheath 
10484	RBOHA	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2, OsRboh2, Rboh2	RESPIRATORY BURST OXIDASE HOMOLOG A	Respiratory Burst Oxidase Homolog A, respiratory burst oxidase homologue A, NADPH oxidase 2	RESPIRATORY BURST OXIDASE HOMOLOG A	osrbohA, rbohA, osrbohA-1, osrbohA-2	1	NM_191558(Record removed). X93301. AF015302. D40466, D39082. OsRboh2 in Zhang et al. 2014, Xu et al. 2020, Ouyang et al. 2023. GO:1903409: reactive oxygen species biosynthetic process. GO:0072593: reactive oxygen species metabolic process. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Character as QTL - Germination,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0734200	LOC_Os01g53294.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009644 - response to high light intensity, GO:0010119 - regulation of stomatal movement, GO:0016491 - oxidoreductase activity, GO:0052542 - callose deposition during defense response, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009415 - response to water, GO:0009753 - response to jasmonic acid stimulus, GO:0043069 - negative regulation of programmed cell death, GO:0009845 - seed germination, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0009413 - response to flooding, GO:0005886 - plasma membrane, GO:0009723 - response to ethylene stimulus, GO:0042554 - superoxide anion generation, GO:0002679 - respiratory burst during defense response, GO:0050793 - regulation of developmental process, GO:0006979 - response to oxidative stress, GO:0005887 - integral to plasma membrane, GO:0009408 - response to heat	TO:0000172 - jasmonic acid sensitivity, TO:0000430 - germination rate, TO:0000605 - hydrogen peroxide content, TO:0000524 - submergence tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000639 - seed fertility, TO:0000259 - heat tolerance, TO:0000457 - total biomass yield	PO:0006023 - bundle sheath , PO:0007057 - 0 seed germination stage , PO:0005360 - aleurone layer , PO:0007022 - seed imbibition stage , PO:0009010 - seed 
10485	RBOHD	rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4, OsRboh4, Rboh4	RESPIRATORY BURST OXIDASE HOMOLOG D	Respiratory Burst Oxidase Homolog D, NADPH oxidase 4	RESPIRATORY BURST OXIDASE HOMOLOG D		5	OsRboh4 in Xu et al. 2020, Ouyang et al. 2023. GO:1903409: reactive oxygen species biosynthetic process.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0465800	LOC_Os05g38980.1				GO:0009733 - response to auxin stimulus, GO:0009413 - response to flooding, GO:0004601 - peroxidase activity, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0009734 - auxin mediated signaling pathway, GO:0005509 - calcium ion binding, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009555 - pollen development, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0000524 - submergence tolerance, TO:0000163 - auxin sensitivity, TO:0000421 - pollen fertility, TO:0000276 - drought tolerance	PO:0001007 - pollen development stage 
10486	RBOHE	rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3, OsRboh3, Rboh3	RESPIRATORY BURST OXIDASE HOMOLOG E	Respiratory Burst Oxidase Homolog E, NADPH oxidase 3	RESPIRATORY BURST OXIDASE HOMOLOG E		1	OsRboh3 in Xu et al. 2020. a target gene for Osa-MIR2919.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0835500	LOC_Os01g61880.2, LOC_Os01g61880.1				GO:0004601 - peroxidase activity, GO:0009414 - response to water deprivation, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0009738 - abscisic acid mediated signaling, GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0005509 - calcium ion binding, GO:0009737 - response to abscisic acid stimulus	TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
10487	RBOHF	RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE, OsRboh6, Rboh6	RESPIRATORY BURST OXIDASE HOMOLOG F	Respiratory Burst Oxidase Homolog F, Respiratory Burst Oxidase Homolog E, NADPH oxidase 6	RESPIRATORY BURST OXIDASE HOMOLOG F		8	XM_482730 (Obsolete data corresponding to Os08g0453700). OsrbohE in Yoshie et al. 2005, Jiang et al. 2017, Zan et al. 2023. OsRboh6 in Ouyang et al. 2023. GO:1903409: reactive oxygen species biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0453700 	LOC_Os08g35210.1				GO:0050665 - hydrogen peroxide biosynthetic process, GO:0005509 - calcium ion binding, GO:0004601 - peroxidase activity, GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0009737 - response to abscisic acid stimulus	TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity	
10488	RBOHG	rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB, OsRBOHB, RBOHB, OsRboh7, Rboh7	RESPIRATORY BURST OXIDASE HOMOLOG G	Respiratory Burst Oxidase Homolog G, NADPH oxidase 7	RESPIRATORY BURST OXIDASE HOMOLOG G	osrbohB	9	OsrbohB in Yoshie et al. 2005, Xiong et al. 2021,  et al. 2021. OsRboh7 in Xu et al. 2020.	 Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0438000	LOC_Os09g26660.1				GO:0009609 - response to symbiotic bacterium, GO:0005509 - calcium ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0004601 - peroxidase activity, GO:0050664 - oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor, GO:0009845 - seed germination, GO:0009415 - response to water	TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0007057 - 0 seed germination stage , PO:0004006 - mesophyll cell , PO:0009010 - seed , PO:0005360 - aleurone layer , PO:0007022 - seed imbibition stage 
10489	RBOHH	rbohH, OsrbohH, Os rbohH, OsNox9, Nox9, OsRboh9, Rboh9, Os-RbohH, RbohH	RESPIRATORY BURST OXIDASE HOMOLOG H	Respiratory Burst Oxidase Homolog H, NADPH oxidase 9	RESPIRATORY BURST OXIDASE HOMOLOG H		12	ABA99453. OsRboh9 in Zhang et al. 2014. GO:0036293: response to decreased oxygen levels. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Character as QTL - Germination,  Biochemical character	Os12g0541300	LOC_Os12g35610.1, LOC_Os12g35610.2, LOC_Os12g35610.3				GO:0004601 - peroxidase activity, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0009415 - response to water, GO:0002238 - response to molecule of fungal origin, GO:0009845 - seed germination, GO:0070482 - response to oxygen levels, GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0009873 - ethylene mediated signaling pathway, GO:0010618 - aerenchyma formation, GO:0016174 - NAD(P)H oxidase activity	TO:0000015 - oxygen sensitivity, TO:0000524 - submergence tolerance, TO:0000173 - ethylene sensitivity, TO:0000439 - fungal disease resistance	PO:0005360 - aleurone layer , PO:0007022 - seed imbibition stage , PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
10490	RAC2	OsRAC2, OsRac2, Os Rac2	RAC/ROP-TYPE GTPASE 2	small GTP-binding protein 2, Rac-like GTP-binding protein 2	RAC/ROP-TYPE GTPASE 2												
10491	RAC3	OsRAC3, OsRac3, Os Rac3	RAC/ROP-TYPE GTPASE 3	small GTP-binding protein 3, Rac-like GTP-binding protein 3	RAC/ROP-TYPE GTPASE 3												
10492	RAC4	OsRAC4, OsRac4, Os Rac4	RAC/ROP-TYPE GTPASE 4	small GTP-binding protein 4, Rac-like GTP-binding protein 4	RAC/ROP-TYPE GTPASE 4												
10493	RAC5	OsRAC5, OsRac5, Os Rac5	RAC/ROP-TYPE GTPASE 5	small GTP-binding protein 5, Rac-like GTP-binding protein 5	RAC/ROP-TYPE GTPASE 5												
10494	RAC6	OsRAC6, OsRac6, Os Rac6	RAC/ROP-TYPE GTPASE 6	small GTP-binding protein 6, Rac-like GTP-binding protein 6	RAC/ROP-TYPE GTPASE 6												
10495	RAC7	OsRAC7, OsRac7, Os Rac7	RAC/ROP-TYPE GTPASE 7	small GTP-binding protein 7, Rac-like GTP-binding protein 7	RAC/ROP-TYPE GTPASE 7												
10496	CML10	OsCML10	CALMODULIN-LIKE PROTEIN 10	calmodulin-like protein 10, CaM-like 10	CALMODULIN-LIKE PROTEIN 10		1	Q8RZB5. a calmodulin-related calcium sensor protein.		Os01g0949500	LOC_Os01g72100.1				GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0005509 - calcium ion binding		
10497	CML11	OsCML11	CALMODULIN-LIKE PROTEIN 11	calmodulin-like protein 11	CALMODULIN-LIKE PROTEIN 11		1	Q9AWK2.	 Tolerance and resistance - Stress tolerance	Os01g0505600	LOC_Os01g32120.1				GO:0043269 - regulation of ion transport, GO:0005509 - calcium ion binding, GO:0000325 - plant-type vacuole		
10498	CML12	OsCML12	CALMODULIN-LIKE PROTEIN 12	calmodulin-like protein 12	CALMODULIN-LIKE PROTEIN 12		1	Q5ZD81.		Os01g0604500	LOC_Os01g41990.1				GO:0005509 - calcium ion binding		
10499	CML13	OsCML13	CALMODULIN-LIKE PROTEIN 13	calmodulin-like protein 13	CALMODULIN-LIKE PROTEIN 13		7	Q7F0J0. LOC_Os07g42660.		Os07g0618800 					GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0006281 - DNA repair, GO:0005737 - cytoplasm		
10500	CML14	OsCML14	CALMODULIN-LIKE PROTEIN 14	calmodulin-like protein 14, CaM-like 14	CALMODULIN-LIKE PROTEIN 14		5	Q6L5F4.	 Tolerance and resistance - Disease resistance	Os05g0577500	LOC_Os05g50180.1				GO:0050832 - defense response to fungus, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium, GO:0005509 - calcium ion binding	TO:0000468 - leaf blast disease resistance	
10501	CML15	OsCML15	CALMODULIN-LIKE PROTEIN 15	calmodulin-like protein 15	CALMODULIN-LIKE PROTEIN 15		5	Q6L4D4.	 Tolerance and resistance - Stress tolerance	Os05g0380900	LOC_Os05g31620.1				GO:0005509 - calcium ion binding, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	
10502	CML16	OsCML16	CALMODULIN-LIKE PROTEIN 16	calmodulin-like protein 16	CALMODULIN-LIKE PROTEIN 16		1	Q5ZCK5.	 Tolerance and resistance - Stress tolerance	Os01g0135700	LOC_Os01g04330.1				GO:0005509 - calcium ion binding, GO:0009628 - response to abiotic stimulus, GO:0019722 - calcium-mediated signaling	TO:0000168 - abiotic stress trait	
10503	CML17	OsCML17	CALMODULIN-LIKE PROTEIN 17	calmodulin-like protein 17	CALMODULIN-LIKE PROTEIN 17		2	Q0DZP5.		Os02g0606600	LOC_Os02g39384.1				GO:0005509 - calcium ion binding		
10504	CML18	OsCML18	CALMODULIN-LIKE PROTEIN 18	calmodulin-like protein 18	CALMODULIN-LIKE PROTEIN 18		5	Q0DJV6.		Os05g0223000	LOC_Os05g13580.1				GO:0005509 - calcium ion binding		
10505	CML2	OsCML2	CALMODULIN-LIKE PROTEIN 2	calmodulin-like protein 2	CALMODULIN-LIKE PROTEIN 2		11	Q0IUU4.		Os11g0134400	LOC_Os11g03980.1				GO:0005509 - calcium ion binding, GO:0016020 - membrane		
10506	CML21	OsCML21	CALMODULIN-LIKE PROTEIN 21	calmodulin-like protein 21	CALMODULIN-LIKE PROTEIN 21		5	Q0DJ94.		Os05g0312600	LOC_Os05g24780.1				GO:0005509 - calcium ion binding		
10507	CML22	OsCML22	CALMODULIN-LIKE PROTEIN 22	calmodulin-like protein 22	CALMODULIN-LIKE PROTEIN 22		4	Q0JC44.		Os04g0492800	LOC_Os04g41540.1				GO:0005509 - calcium ion binding		
10508	CML24	OsCML24	CALMODULIN-LIKE PROTEIN 24	calmodulin-like protein 24	CALMODULIN-LIKE PROTEIN 24		7	LOC_Os07g48340. Q7XHW4. XB21 interacting protein (XB21IP). Calmodulin-related calcium sensor protein.		Os07g0681400	LOC_Os07g48340.1, LOC_Os07g48340.2				GO:0005509 - calcium ion binding		
10509	CML27	OsCML27	CALMODULIN-LIKE PROTEIN 27	calmodulin-like protein 27	CALMODULIN-LIKE PROTEIN 27		3	Q10LX4.		Os03g0331700	LOC_Os03g21380.1, LOC_Os03g21380.2				GO:0005509 - calcium ion binding		
10510	CML20	OsCML20	CALMODULIN-LIKE PROTEIN 20	calmodulin-like protein 20	CALMODULIN-LIKE PROTEIN 20		2	Q6Z2J1.		Os02g0733500	LOC_Os02g50060.1				GO:0005509 - calcium ion binding		
10511	CML28	OsCML28	CALMODULIN-LIKE PROTEIN 28	calmodulin-like protein 28	CALMODULIN-LIKE PROTEIN 28		12	Q2QVI1.		Os12g0228800	LOC_Os12g12730.1				GO:0005509 - calcium ion binding		
10512	CML29	OsCML29	CALMODULIN-LIKE PROTEIN 29	calmodulin-like protein 29	CALMODULIN-LIKE PROTEIN 29		6	Q5Z676.		Os06g0691600	LOC_Os06g47640.1				GO:0005509 - calcium ion binding		
10513	CML3	OsCML3, OsSTA271, OsCML3m, OsCML3s	CALMODULIN-LIKE PROTEIN 3	calmodulin-like protein 3, CaM-Like 3	CALMODULIN-LIKE PROTEIN 3		12	Q0IQB6. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0132300	LOC_Os12g03816.1				GO:0016020 - membrane, GO:0005509 - calcium ion binding, GO:0019722 - calcium-mediated signaling, GO:0005634 - nucleus, GO:0005886 - plasma membrane		PO:0009066 - anther 
10514	CML30	OsCML30	CALMODULIN-LIKE PROTEIN 30	calmodulin-like protein 30	CALMODULIN-LIKE PROTEIN 30		6	Q5SND2.		Os06g0172200	LOC_Os06g07560.1				GO:0005509 - calcium ion binding		
10515	CML31	OsCML31, OsMSR2, MSR2	CALMODULIN-LIKE PROTEIN 31	calmodulin-like protein 31, multi-stress-responsive gene 2	CALMODULIN-LIKE PROTEIN 31		1	Q8RYK0.	 Tolerance and resistance - Stress tolerance	Os01g0955100	LOC_Os01g72530.1				GO:0034059 - response to anoxia, GO:0019722 - calcium-mediated signaling, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005509 - calcium ion binding, GO:0009651 - response to salt stress, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000394 - drought related trait, TO:0000432 - temperature response trait	
10516	CML32	OsCML32	CALMODULIN-LIKE PROTEIN 32	calmodulin-like protein 32	CALMODULIN-LIKE PROTEIN 32		8	Q84UL5.		Os08g0144100	LOC_Os08g04890.1				GO:0005509 - calcium ion binding		
10517	CML5	OsCML5	CALMODULIN-LIKE PROTEIN 5	calmodulin-like protein 5	CALMODULIN-LIKE PROTEIN 5		12	Q948R0. AU085804.	 Tolerance and resistance - Stress tolerance	Os12g0603800	LOC_Os12g41110.1				GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0005509 - calcium ion binding, GO:0009414 - response to water deprivation, GO:0019722 - calcium-mediated signaling, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus		
10518	CML6	OsCML6	CALMODULIN-LIKE PROTEIN 6	calmodulin-like protein 6	CALMODULIN-LIKE PROTEIN 6		11	Q2R1Z5.		Os11g0586200	LOC_Os11g37550.1				GO:0005509 - calcium ion binding		
10519	CML7	OsCML7, OsSTKC	CALMODULIN-LIKE PROTEIN 7	calmodulin-like protein 7, Ser/Thr kinase/calmodulin	CALMODULIN-LIKE PROTEIN 7		8	Q84VG0. AY224521.		Os08g0117400	LOC_Os08g02420.1				GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005509 - calcium ion binding, GO:0009409 - response to cold		
10520	CML8	OsCML8	CALMODULIN-LIKE PROTEIN 8	calmodulin-like protein 8	CALMODULIN-LIKE PROTEIN 8		10	Q338P8.	 Tolerance and resistance - Stress tolerance	Os10g0389000	LOC_Os10g25010.1				GO:0005509 - calcium ion binding		
10521	CML9	OsCML9	CALMODULIN-LIKE PROTEIN 9	calmodulin-like protein 9	CALMODULIN-LIKE PROTEIN 9		5	Q6F334.		Os05g0491000	LOC_Os05g41200.1				GO:0005509 - calcium ion binding		
10522	IAA11	OsIAA11	AUX/IAA PROTEIN 11	Aux/IAA protein 11, indole-3-acetic acid inducible11, indole-3-acetic acid inducible 11	AUX/IAA PROTEIN 11	Osiaa11	3	Q75GK0. BAF12627. rice homolog  of Arabidopsis AtIAA14. GO:1990110: callus formation.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Tolerance and resistance	Os03g0633500	LOC_Os03g43400.1				GO:0001708 - cell fate specification, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009629 - response to gravity, GO:0009630 - gravitropism, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009734 - auxin mediated signaling pathway, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0010102 - lateral root morphogenesis, GO:0009753 - response to jasmonic acid stimulus, GO:0048527 - lateral root development	TO:0000511 - phosphorus uptake, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0002693 - gravity response trait, TO:0000428 - callus induction	PO:0007520 - root development stage 
10523	IAA31	OsIAA3, IAA3, OsIAA31, OsIAA30, IAA30	_	Aux/IAA protein 3, Aux/IAA protein 31, Auxin-responsive protein IAA31		Osiaa3	12	P0C133. OsIAA3 in Mao et al. 2020. OsIAA30 in Li et al. 2022.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os12g0601400	LOC_Os12g40900.1				GO:0030912 - response to deep water, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0051607 - defense response to virus, GO:0009733 - response to auxin stimulus, GO:0006351 - transcription, DNA-dependent, GO:0009408 - response to heat, GO:0005634 - nucleus	TO:0000020 - black streak dwarf virus resistance, TO:0002672 - auxin content, TO:0000524 - submergence tolerance, TO:0000259 - heat tolerance, TO:0000163 - auxin sensitivity	
10524	IAA12	OsIAA12	AUX/IAA PROTEIN 12	Aux/IAA protein 12, INDOLE-3-ACETIC ACID INDUCIBLE 12	AUX/IAA PROTEIN 12		3	Q75GK1. TO: 0000829: leaf lamina morphology trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os03g0633800	LOC_Os03g43410.1				GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus, GO:0006351 - transcription, DNA-dependent, GO:0051510 - regulation of unidimensional cell growth, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway	TO:0002688 - leaf lamina joint bending, TO:0002693 - gravity response trait, TO:0000206 - leaf angle	
10525	AGC1	OsPIDL, PIDL, OsAGC1	AGC PROTEIN KINASE 1	OsPINOID-like, OsPIDlike, AGC protein kinase 1	AGC PROTEIN KINASE 1		1	Q94E49. OsPID homolog.	 Biochemical character	Os01g0174700	LOC_Os01g07940.1				GO:0048825 - cotyledon development, GO:0007275 - multicellular organismal development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009734 - auxin mediated signaling pathway, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation		
10526	CFL1	OsCFL1	CURLY FLAG LEAF 1	curly flag leaf1		cfl1-1	2	Rice CFL1 negatively regulate cuticle development. the candidate gene for qLFR2.3,	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os02g0516400	LOC_Os02g31140.1				GO:0042335 - cuticle development	TO:0000085 - leaf rolling, TO:0000068 - lodging incidence, TO:0002681 - leaf curling	
10527	VPE2	OsVPE2, OsaLeg1, OsLeg1, Leg1	VACUOLAR PROCESSING ENZYME 2	vacuolar processing enzyme 2, legumain 1	VACUOLAR PROCESSING ENZYME 2	osvpe2-1, osvpe2-2	1	BAF05258. a vegetative-related protease. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:1902883: negative regulation of response to oxidative stress.GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity	Os01g0559600	LOC_Os01g37910.1, LOC_Os01g37910.2, LOC_Os01g37910.3				GO:0004197 - cysteine-type endopeptidase activity, GO:0006979 - response to oxidative stress, GO:0006508 - proteolysis, GO:0009409 - response to cold, GO:0000323 - lytic vacuole	TO:0000615 - abscisic acid sensitivity, TO:0000429 - salt sensitivity, TO:0000249 - leaf senescence, TO:0000164 - stress trait, TO:0000346 - tiller number, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000455 - seed set percent, TO:0000605 - hydrogen peroxide content	
10528	REP2	OsVPE3, VPE3, OsREP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2	CYSTEINE ENDOPEPTIDASE REP-2	vacuolar processing enzyme 3, cysteine endopeptidase REP-2, legumain 2	CYSTEINE ENDOPEPTIDASE REP-2		2	BAC41387. AB081464. asparaginyl endopeptidase. a seed-related legumain.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os02g0644000	LOC_Os02g43010.1, LOC_Os02g43010.2				GO:0009845 - seed germination, GO:0006508 - proteolysis, GO:0004197 - cysteine-type endopeptidase activity, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0043067 - regulation of programmed cell death, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000164 - stress trait, TO:0000429 - salt sensitivity	PO:0007057 - 0 seed germination stage , PO:0005360 - aleurone layer , PO:0009010 - seed 
10529	VPE4	OsVPE4, OsaLeg4, Leg4	VACUOLAR PROCESSING ENZYME 4	vacuolar processing enzyme 4, legumain 4	VACUOLAR PROCESSING ENZYME 4		5	BAF18418. a vegetative-related protease.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0593900	LOC_Os05g51570.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0000323 - lytic vacuole	TO:0000615 - abscisic acid sensitivity, TO:0000164 - stress trait, TO:0000429 - salt sensitivity	
10530	_	OsGLU3, OsGH9A2, GLU3, GH9A2	_	endo-1, 4-b-D-glucanase 3, glycoside hydrolase OsGH9A2, glycoside hydrolase 9A2	_		4	a putative membrane-bound endo-1,4-b-glucanase. Q7XUK4. GO:0071555 cellular cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0497200	LOC_Os04g41970.1				GO:0016021 - integral to membrane, GO:0030245 - cellulose catabolic process, GO:0070482 - response to oxygen levels, GO:0008810 - cellulase activity	TO:0000015 - oxygen sensitivity	
10531	ERF4	OsERF#004, OsERF004, OsERF4, AP2/EREBP#159, AP2/EREBP159	ETHYLENE RESPONSE FACTOR 4	ethylene response factor 4, APETALA2/ethylene-responsive element binding protein 159	ETHYLENE RESPONSE FACTOR 4		12		 Other	Os12g0582900	LOC_Os12g39330.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10532	ERF5	OsERF#005, OsERF005, OsERF5, AP2/EREBP#072, AP2/EREBP72	ETHYLENE RESPONSE FACTOR 5	ethylene response factor 5, APETALA2/ethylene-responsive element binding protein 72	ETHYLENE RESPONSE FACTOR 5		7		 Other	Os07g0204000	LOC_Os07g10410.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10533	ERF6	OsERF#006, OsERF006, OsERF6, AP2/EREBP#075, AP2/EREBP75	ETHYLENE RESPONSE FACTOR 6	ethylene response factor 6, APETALA2/ethylene-responsive element binding protein 75	ETHYLENE RESPONSE FACTOR 6		7		 Other	Os07g0575000	LOC_Os07g38750.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10534	ERF7	OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142, DLN158, OsDLN158	ETHYLENE RESPONSE FACTOR 7	ethylene response factor 7, APETALA2/ethylene-responsive element binding protein 142, DLN repressor 158, DLN motif protein 158	ETHYLENE RESPONSE FACTOR 7		6		 Other	Os06g0166400	LOC_Os06g07030.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10535	ERF9	OsERF#009, OsERF009, OsERF9, AP2/EREBP#135, AP2/EREBP135	ETHYLENE RESPONSE FACTOR 9	ethylene response factor 9, APETALA2/ethylene-responsive element binding protein 135	ETHYLENE RESPONSE FACTOR 9		3		 Other	Os03g0263000	LOC_Os03g15660.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10536	ERF10	OsERF#010, OsERF010, OsERF10	ETHYLENE RESPONSE FACTOR 10	ethylene response factor 10	ETHYLENE RESPONSE FACTOR 10		6	LOC_Os06g09690 (Obsolete Locus).	 Other								
10538	ERF14	OsERF#014, OsERF014, OsERF14, AP2/EREBP#103, AP2/EREBP103	ETHYLENE RESPONSE FACTOR 14	ethylene response factor 14, APETALA2/ethylene-responsive element binding protein 103	ETHYLENE RESPONSE FACTOR 14		6	LOC_Os06g09810 (Os06g0198400 in PMID:22807623).	 Other		LOC_Os06g09810				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10539	ERF15	OsERF#015, OsERF015, OsERF15, AP2/EREBP#102, AP2/EREBP102	ETHYLENE RESPONSE FACTOR 15	ethylene response factor 15, APETALA2/ethylene-responsive element binding protein 102	ETHYLENE RESPONSE FACTOR 15		6	LOC_Os06g09790 (Os06g0198200 in PMID:22807623).	 Other		LOC_Os06g09790				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10540	ERF16	OsERF#016, OsERF016, OsERF16, AP2/EREBP#055, AP2/EREBP55	ETHYLENE RESPONSE FACTOR 16	ethylene response factor 16, APETALA2/ethylene-responsive element binding protein 55	ETHYLENE RESPONSE FACTOR 16		6	LOC_Os06g09760 (Os06g0197900 in PMID:22807623).	 Other		LOC_Os06g09760				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10541	ERF17	OsERF#017, OsERF017, OsERF17, AP2/EREBP#091, AP2/EREBP91	ETHYLENE RESPONSE FACTOR 17	ethylene response factor 17, APETALA2/ethylene-responsive element binding protein 91	ETHYLENE RESPONSE FACTOR 17		1	ERF020 in Li et al. 2021.	 Other	Os01g0885900	LOC_Os01g66270.1						
10542	ERF18	OsERF#018, OsERF018, OsERF18, AP2/EREBP#115, AP2/EREBP115	ETHYLENE RESPONSE FACTOR 18	ethylene response factor 18, APETALA2/ethylene-responsive element binding protein 115	ETHYLENE RESPONSE FACTOR 18		10		 Other	Os10g0523900	LOC_Os10g38000.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10543	ERF19	OsERF#019, OsERF019, OsERF19, AP2/EREBP#157, AP2/EREBP157	ETHYLENE RESPONSE FACTOR 19	ethylene response factor 19, APETALA2/ethylene-responsive element binding protein 157	ETHYLENE RESPONSE FACTOR 19		11		 Other	Os11g0242300	LOC_Os11g13840.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10544	ERF20	OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G	ETHYLENE RESPONSE FACTOR 20	ethylene response factor 20, APETALA2/ethylene-responsive element binding protein 126	ETHYLENE RESPONSE FACTOR 20		2	OsDREB1G  in Mao et al. 2019.	 Other	Os02g0676800	LOC_Os02g45420.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10545	ERF21	OsERF#021, OsERF021, OsERF21, AP2/EREBP#140, AP2/EREBP140	ETHYLENE RESPONSE FACTOR 21	ethylene response factor 21, APETALA2/ethylene-responsive element binding protein 140	ETHYLENE RESPONSE FACTOR 21		2		 Other	Os02g0558700	LOC_Os02g35240.1						
10546	ERF22	OsERF#022, OsERF022, OsERF22, AP2/EREBP#087, AP2/EREBP87	ETHYLENE RESPONSE FACTOR 22	ethylene response factor 22, APETALA2/ethylene-responsive element binding protein 87	ETHYLENE RESPONSE FACTOR 22		4	LOC_Os04g36640 (Os04g0443800 (Obsolete data)) in Rashid et al. 2012.	 Other						GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10547	ERF23	OsERF#023, OsERF023, OsERF23, AP2/EREBP#144, AP2/EREBP144	ETHYLENE RESPONSE FACTOR 23	ethylene response factor 23, APETALA2/ethylene-responsive element binding protein 144	ETHYLENE RESPONSE FACTOR 23		4		 Other	Os04g0572200	LOC_Os04g48330.1				GO:0003700 - transcription factor activity		
10549	DREB1F	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F	ethylene response factor 27, APETALA2/ethylene-responsive element binding protein 81, Dehydration-responsive element-binding protein 1F	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F		1	Q8S9Z5. AY785897. AY345234. A2WZI4.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0968800	LOC_Os01g73770.1				GO:0009409 - response to cold, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress	TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
10550	ERF32	OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21, OsDREB2B	ETHYLENE RESPONSE FACTOR 32	ethylene response factor 32, APETALA2/ethylene-responsive element binding protein 21	ETHYLENE RESPONSE FACTOR 32		2	OsDREB2B in Liu et al. 2021.	 Other,  Tolerance and resistance - Stress tolerance	Os02g0656600	LOC_Os02g43940.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	
10551	ERF33	OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2	ETHYLENE RESPONSE FACTOR 33	ethylene response factor 33, APETALA2/ethylene-responsive element binding protein 40	ETHYLENE RESPONSE FACTOR 33		4	AY196209. HQ858809. AP2-EREBP transcription factor.	 Other	Os04g0549700	LOC_Os04g46400.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10552	ERF34	OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42	ETHYLENE RESPONSE FACTOR 34	ethylene response factor 34, APETALA2/ethylene-responsive element binding protein 42	ETHYLENE RESPONSE FACTOR 34		4	LOC_Os04g46440.	 Other	Os04g0550200	LOC_Os04g46440.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10553	ERF35	OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211, ARAG1, OsARAG1	ETHYLENE RESPONSE FACTOR 35	"ethylene response factor 35, APETALA2/ethylene-responsive element binding protein 148, AP2/EREBP-type
transcription factor OsAP211, ABA responsive AP2-like gene 1"	ETHYLENE RESPONSE FACTOR 35		2	AY346094.	 Other,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os02g0657000	LOC_Os02g43970.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009845 - seed germination, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009009 - plant embryo , PO:0009010 - seed , PO:0009005 - root , PO:0009049 - inflorescence , PO:0007057 - 0 seed germination stage 
10554	ERF36	OsERF#036, OsERF036, OsERF36, AP2/EREBP#007, AP2/EREBP7	ETHYLENE RESPONSE FACTOR 36	ethylene response factor 36, APETALA2/ethylene-responsive element binding protein 7	ETHYLENE RESPONSE FACTOR 36		10		 Other	Os10g0560700	LOC_Os10g41130.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10555	ERF37	OsERF#037, OsERF037, OsERF37, AP2/EREBP#041, AP2/EREBP41	ETHYLENE RESPONSE FACTOR 37	ethylene response factor 37, APETALA2/ethylene-responsive element binding protein 41	ETHYLENE RESPONSE FACTOR 37		4		 Other	Os04g0549800	LOC_Os04g46410.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10556	ERF38	OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1	ETHYLENE RESPONSE FACTOR 38	ethylene response factor 38, APETALA2/ethylene-responsive element binding protein 82	ETHYLENE RESPONSE FACTOR 38		2	AY258281.	 Other	Os02g0231000	LOC_Os02g13710.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10557	ERF39	OsERF#039, OsERF039, OsERF39, AP2/EREBP#002, AP2/EREBP2	ETHYLENE RESPONSE FACTOR 39	ethylene response factor 39, APETALA2/ethylene-responsive element binding protein 2	ETHYLENE RESPONSE FACTOR 39		1		 Other	Os01g0200600	LOC_Os01g10370.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10558	ERF41	OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E	ETHYLENE RESPONSE FACTOR 41	ethylene response factor 41, APETALA2/ethylene-responsive element binding protein 25, dehydration-responsive element-binding protein 2E	ETHYLENE RESPONSE FACTOR 41		3	Q10R18.	 Tolerance and resistance - Stress tolerance	Os03g0174400	LOC_Os03g07830.1				GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent	TO:0000276 - drought tolerance	
10559	ERF42	OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, DREB2B, OsDREB2B2, OsDREB2A, DREB2A	ETHYLENE RESPONSE FACTOR 42	ethylene response factor 42, APETALA2/ethylene-responsive element binding protein 48, dehydration-responsive element-binding protein 2B	ETHYLENE RESPONSE FACTOR 42		5	Q5W6R4. OsDREB2A in Rao et al. 2015. OsDREB2B in Chen et al. 2008, Moin et al. 2017, Freeg et al. 2022, Zan et al. 2023, Yoo et al. 2023.	 Tolerance and resistance - Stress tolerance	Os05g0346200	LOC_Os05g27930.4, LOC_Os05g27930.3, LOC_Os05g27930.2, LOC_Os05g27930.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
10560	ERF43	OsERF#043, OsERF043, OsERF43, AP2/EREBP#095, AP2/EREBP95	ETHYLENE RESPONSE FACTOR 43	ethylene response factor 43, APETALA2/ethylene-responsive element binding protein 95	ETHYLENE RESPONSE FACTOR 43		5	Q65WX1.	 Tolerance and resistance - Stress tolerance	Os05g0473300	LOC_Os05g39590.1, LOC_Os05g39590.2, LOC_Os05g39590.3				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10561	ERF44	OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124	ETHYLENE RESPONSE FACTOR 44	ethylene response factor 44, APETALA2/ethylene-responsive element binding protein 112, dehydration-responsive element-binding protein 2C, endosperm-specific gene 124	ETHYLENE RESPONSE FACTOR 44		8	Q84ZA1.	 Tolerance and resistance - Stress tolerance	Os08g0565200	LOC_Os08g45110.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006950 - response to stress		PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009072 - plant ovary 
10562	ERF45	OsERF#045, OsERF045, OsERF45, AP2/EREBP#119, AP2/EREBP119	ETHYLENE RESPONSE FACTOR 45	ethylene response factor 45, APETALA2/ethylene-responsive element binding protein 119	ETHYLENE RESPONSE FACTOR 45		4		 Other	Os04g0529100	LOC_Os04g44670.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10563	ERF46	OsERF#046, OsERF046, OsERF46	ETHYLENE RESPONSE FACTOR 46	ethylene response factor 46	ETHYLENE RESPONSE FACTOR 46		2		 Other	Os02g0638400	LOC_Os02g42580.1						
10564	ERF47	OsERF#047, OsERF047, OsERF47, AP2/EREBP#121, AP2/EREBP121	ETHYLENE RESPONSE FACTOR 47	ethylene response factor 47, APETALA2/ethylene-responsive element binding protein 121	ETHYLENE RESPONSE FACTOR 47		3		 Other	Os03g0191900	LOC_Os03g09170.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10565	ERF48	OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170, OsDRAP1, DRAP1, OsERF48/OsDRAP1	ETHYLENE RESPONSE FACTOR 48	ethylene response factor 48, APETALA2/ethylene-responsive element binding protein 170, Drought Responsive AP2/EREBP gene 1	ETHYLENE RESPONSE FACTOR 48		8		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Other,  Character as QTL - Yield and productivity	Os08g0408500	LOC_Os08g31580.1				GO:0048364 - root development, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0045454 - cell redox homeostasis, GO:0009651 - response to salt stress	TO:0000456 - spikelet number, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000656 - root development trait, TO:0000227 - root length, TO:0000396 - grain yield, TO:0000115 - root mass density, TO:0002673 - amino acid content, TO:0000152 - panicle number, TO:0006002 - proline content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0007520 - root development stage 
10566	ERF49	OsERF#049, OsERF049, OsERF49, AP2/EREBP#132, AP2/EREBP132	ETHYLENE RESPONSE FACTOR 49	ethylene response factor 49, APETALA2/ethylene-responsive element binding protein 132	ETHYLENE RESPONSE FACTOR 49		2		 Other	Os02g0752800	LOC_Os02g51670.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10567	ERF50	OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6, OsERF60, ERF60	ETHYLENE RESPONSE FACTOR 50	ethylene response factor 50, APETALA2/ethylene-responsive element binding protein 113, dehydration-responsive element-binding protein 6	ETHYLENE RESPONSE FACTOR 50		9	HQ858824. AP2-EREBP transcription factor. OsERF60 in Zhang et al. 2023.  GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0369000	LOC_Os09g20350.1				GO:0006351 - transcription, DNA-dependent, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity	
10568	RPH1	OsERF#052, OsERF052, OsERF52, ERF52, AP2/EREBP#053, AP2/EREBP53, OsRPH1, STG5, OsSTG5	REDUCED PLANT HEIGHT 1	ethylene response factor 52, APETALA2/ethylene-responsive element binding protein 53, Reduced Plant Height 1, salt tolerance gene 5	ETHYLENE RESPONSE FACTOR 52	stg5	5	the potential candidate gene of a major salt-tolerant locus known as qSTS5 (salt tolerance site 5).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Other	Os05g0572000	LOC_Os05g49700.1				GO:0006351 - transcription, DNA-dependent, GO:0055075 - potassium ion homeostasis, GO:0009637 - response to blue light, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0055078 - sodium ion homeostasis	TO:0000609 - potassium content, TO:0000525 - sodium to potassium content ratio, TO:0002689 - leaf sheath length, TO:0002675 - gibberellic acid content, TO:0000159 - blue light sensitivity, TO:0000207 - plant height, TO:0000145 - internode length, TO:0006001 - salt tolerance, TO:0001016 - relative chlorophyll content, TO:0000608 - sodium content	
10569	ERF53	OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134	ETHYLENE RESPONSE FACTOR 53	ethylene response factor 53, APETALA2/ethylene-responsive element binding protein 134	ETHYLENE RESPONSE FACTOR 53		1	LOC_Os01g12440.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0224100	LOC_Os01g12440.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0010332 - response to gamma radiation, GO:0003677 - DNA binding		
10570	ERF54	OsERF#054, OsERF054, OsERF54, AP2/EREBP#162, AP2/EREBP162	ETHYLENE RESPONSE FACTOR 54	ethylene response factor 54, APETALA2/ethylene-responsive element binding protein 162	ETHYLENE RESPONSE FACTOR 54		1		 Other	Os01g0657400	LOC_Os01g46870.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10571	ERF55	OsERF#055, OsERF055, OsERF55, AP2/EREBP#146, AP2/EREBP146	ETHYLENE RESPONSE FACTOR 55	ethylene response factor 55, APETALA2/ethylene-responsive element binding protein 146	ETHYLENE RESPONSE FACTOR 55		6		 Other	Os06g0160500	LOC_Os06g06540.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10572	ERF56	OsERF#056, OsERF056, OsERF56, AP2/EREBP#164, AP2/EREBP164	ETHYLENE RESPONSE FACTOR 56	ethylene response factor 56, APETALA2/ethylene-responsive element binding protein 164	ETHYLENE RESPONSE FACTOR 56		5		 Other	Os05g0316800	LOC_Os05g25260.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10573	ERF57	OsERF#057, OsERF057, OsERF57, AP2/EREBP#145, AP2/EREBP145, OsERF1, ERF1	ETHYLENE RESPONSE FACTOR 57	ethylene response factor 57, APETALA2/ethylene-responsive element binding protein 145	ETHYLENE RESPONSE FACTOR 57		7	OsERF1 in Zhang et al. 2023.	 Other	Os07g0227600	LOC_Os07g12510.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10574	ERF58	OsERF#058, OsERF058, OsERF58, AP2/EREBP#032, AP2/EREBP32, OsERF77, ERF77	ETHYLENE RESPONSE FACTOR 58	ethylene response factor 58, APETALA2/ethylene-responsive element binding protein 32	ETHYLENE RESPONSE FACTOR 58		3	OsERF77 in Zhang et al. 2023.	 Other	Os03g0815800	LOC_Os03g60120.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10575	ERF61	OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93	ETHYLENE RESPONSE FACTOR 61	ethylene response factor 61, APETALA2/ethylene-responsive element binding protein 93	ETHYLENE RESPONSE FACTOR 61		5	AJ575218.	 Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Germination,  Seed	Os05g0361700	LOC_Os05g29810.1				GO:0009413 - response to flooding, GO:0006351 - transcription, DNA-dependent, GO:0009629 - response to gravity, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity	TO:0002693 - gravity response trait, TO:0000653 - seed development trait, TO:0000620 - embryo development trait, TO:0000524 - submergence tolerance	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
10576	ERF62	OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125, WAP1, OsWAP1, OsSTAP1, STAP1, ERF1, OsERF1	ETHYLENE RESPONSE FACTOR 62	ethylene response factor 62, APETALA2/ethylene-responsive element binding protein 125, Wall-Associated regulator WAP1	ETHYLENE RESPONSE FACTOR 62	OsLG3IRAT109, OsLG3Nipponbare	3	GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence. GO:1902305: regulation of sodium ion transmembrane transport. OsSTAP1 and ERF1 in Wang et al. 2020.	 Other,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os03g0183000	LOC_Os03g08470.2, LOC_Os03g08470.1, LOC_Os03g08470.3				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009735 - response to cytokinin stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009873 - ethylene mediated signaling pathway, GO:0009736 - cytokinin mediated signaling, GO:0003700 - transcription factor activity, GO:0008284 - positive regulation of cell proliferation, GO:0006970 - response to osmotic stress, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0045454 - cell redox homeostasis, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis, GO:0051238 - sequestering of metal ion, GO:0009409 - response to cold	TO:0000167 - cytokinin sensitivity, TO:0000590 - grain weight, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000276 - drought tolerance, TO:0000609 - potassium content, TO:0000608 - sodium content, TO:0000303 - cold tolerance	PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root , PO:0025034 - leaf 
10577	ERF64	OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4	ETHYLENE RESPONSE FACTOR 64	ethylene response factor 64, APETALA2/ethylene-responsive element binding protein 29, benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 4, benzothiadiazole-induced ethylene responsive transcriptional factor 4, BTH-induced ethylene responsive transcriptional factor 4, BTH-induced ERF transcriptional factor 4	ETHYLENE RESPONSE FACTOR 64		3	AAK92632. AY831395.	 Other	Os03g0183300	LOC_Os03g08500.1, LOC_Os03g08500.2				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10578	ERF65	OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107	ETHYLENE RESPONSE FACTOR 65	ethylene response factor 65, APETALA2/ethylene-responsive element binding protein 107	ETHYLENE RESPONSE FACTOR 65		7		 Reproductive organ - Spikelet, flower, glume, awn,  Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0617000	LOC_Os07g42510.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0048653 - anther development, GO:0003700 - transcription factor activity	TO:0000437 - male sterility	PO:0001004 - anther development stage 
10579	ERF66	OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30, EREBP30	ETHYLENE RESPONSE FACTOR 66	ethylene response factor 66, APETALA2/ethylene-responsive element binding protein 30	ETHYLENE RESPONSE FACTOR 66		3		 Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os03g0341000	LOC_Os03g22170.1				GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0009629 - response to gravity, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0034059 - response to anoxia	TO:0000524 - submergence tolerance, TO:0002693 - gravity response trait	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
10580	ERF67	OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76	ETHYLENE RESPONSE FACTOR 67	ethylene response factor 67, APETALA2/ethylene-responsive element binding protein 76	ETHYLENE RESPONSE FACTOR 67		7		 Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Germination	Os07g0674800	LOC_Os07g47790.2, LOC_Os07g47790.1				GO:0030912 - response to deep water, GO:0034059 - response to anoxia, GO:0005634 - nucleus, GO:0009413 - response to flooding, GO:0009629 - response to gravity, GO:0003700 - transcription factor activity, GO:0009845 - seed germination, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent	TO:0000524 - submergence tolerance, TO:0002693 - gravity response trait	PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage 
10581	ERF68	OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2	ETHYLENE RESPONSE FACTOR 68	ethylene response factor 68, APETALA2/ethylene-responsive element binding protein 3, ethylene response factor 2	ETHYLENE RESPONSE FACTOR 68		1	AJ575219.	 Seed,  Tolerance and resistance - Stress tolerance,  Other	Os01g0313300	LOC_Os01g21120.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0001666 - response to hypoxia, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
10582	ERF69	OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28, DLN77, OsDLN77, HINGE5, OsHINGE5	ETHYLENE RESPONSE FACTOR 69	ethylene response factor 69, APETALA2/ethylene-responsive element binding protein 28, DLN repressor 77, DLN motif protein 77, Highly Induced by Nitrate Gene 5	ETHYLENE RESPONSE FACTOR 69		3	TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0183200	LOC_Os03g08490.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0010167 - response to nitrate		
10583	ERF71	OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15	ETHYLENE RESPONSE FACTOR 71	ethylene response factor 71, APETALA2/ethylene-responsive element binding protein 124, ethylene response factor 15	ETHYLENE RESPONSE FACTOR 71		6	ABH04236. LOC_Os06g09390. TO:0001055: root aerenchyma cross-sectional area.	 Vegetative organ - Root,  Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os06g0194000	LOC_Os06g09390.1, LOC_Os06g09390.2				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0005829 - cytosol, GO:0042545 - cell wall modification, GO:0048364 - root development, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000043 - root anatomy and morphology trait, TO:0000172 - jasmonic acid sensitivity	PO:0007520 - root development stage , PO:0006085 - root meristem , PO:0006203 - pericycle , PO:0005059 - root endodermis 
10584	ERF74	OsERF#074, OsERF074, OsERF74, AP2/EREBP#051, AP2/EREBP51, DLN152, OsDLN152	ETHYLENE RESPONSE FACTOR 74	ethylene response factor 74, APETALA2/ethylene-responsive element binding protein 51, DLN repressor 152, DLN motif protein 152	ETHYLENE RESPONSE FACTOR 74		5		 Other	Os05g0497300	LOC_Os05g41780.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10585	ERF76	OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46, DLN126, OsDLN126	ETHYLENE RESPONSE FACTOR 76	ethylene response factor 76, APETALA2/ethylene-responsive element binding protein 46, DLN repressor 126, DLN motif protein 126	ETHYLENE RESPONSE FACTOR 76		4		 Tolerance and resistance - Stress tolerance,  Other	Os04g0669200	LOC_Os04g57340.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus	TO:0006001 - salt tolerance	
10586	NDL1	ERF79, OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17, OsNDL1, DSP, OsDSP	NARROW AND DWARF LEAF 1	ethylene response factor 79, APETALA2/ethylene-responsive element binding protein 17, defective stigma and panicle	ETHYLENE RESPONSE FACTOR 79	dsp, dsp cr2-1, dsp cr2-2, dsp cr2-5, dsp cr2-8, dsp cr2-15-3, dsp cr2-15, dsp cr3	2	the Ortholog of Arabidopsis ENHANCER OF SHOOT REGENERATION1 (ESR1)/DORNROSCHEN (DRN). GO:0062210:  shoot regeneration. GO:0090506: axillary shoot meristem initiation. PO:0030123: panicle inflorescence. TO:0000784: inflorescence branch morphology trait. GO:2000012: regulation of auxin polar transport.	 Other,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Vegetative organ - Shoot apical meristem(SAM),  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Vegetative organ - Leaf	Os02g0594300	LOC_Os02g38090.1				GO:0048437 - floral organ development, GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0008283 - cell proliferation, GO:0010492 - maintenance of shoot apical meristem identity, GO:0003677 - DNA binding, GO:0048366 - leaf development, GO:0009926 - auxin polar transport, GO:0009733 - response to auxin stimulus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010223 - secondary shoot formation, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity, GO:0048480 - stigma development, GO:0005634 - nucleus	TO:0000358 - female sterility, TO:0006016 - meristem tissue development trait, TO:0000621 - inflorescence development trait, TO:0000655 - leaf development trait, TO:0000050 - inflorescence branching, TO:0000455 - seed set percent, TO:0006038 - floral organ number, TO:0006020 - shoot apical meristem development, TO:0000456 - spikelet number, TO:0000163 - auxin sensitivity, TO:0000346 - tiller number, TO:0000630 - pedicel length, TO:0006022 - floral organ development trait, TO:0000329 - tillering ability	PO:0025127 - primordium , PO:0025477 - floral organ primordium , PO:0020148 - shoot apical meristem , PO:0000017 - vascular leaf primordium , PO:0009049 - inflorescence , PO:0009072 - plant ovary , PO:0009073 - stigma , PO:0001083 - inflorescence development stage , PO:0001050 - leaf development stage , PO:0009013 - portion of meristem tissue , PO:0006327 - spikelet meristem , PO:0009066 - anther 
10587	ERF80	OsERF#080, OsERF080, OsERF80, AP2/EREBP#069, AP2/EREBP69	ETHYLENE RESPONSE FACTOR 80	ethylene response factor 80, APETALA2/ethylene-responsive element binding protein 69	ETHYLENE RESPONSE FACTOR 80		8		 Other	Os08g0173700	LOC_Os08g07700.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10588	ERF81	OsERF#081, OsERF081, OsERF81, AP2/EREBP#014, AP2/EREBP14	ETHYLENE RESPONSE FACTOR 81	ethylene response factor 81, APETALA2/ethylene-responsive element binding protein 14	ETHYLENE RESPONSE FACTOR 81		2		 Other,  Tolerance and resistance - Stress tolerance	Os02g0520000	LOC_Os02g32040.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0009266 - response to temperature stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000432 - temperature response trait	
10589	ERF82	OsERF#082, OsERF082, OsERF82, AP2/EREBP#035, AP2/EREBP35	ETHYLENE RESPONSE FACTOR 82	ethylene response factor 82, APETALA2/ethylene-responsive element binding protein 35	ETHYLENE RESPONSE FACTOR 82		4		 Other,  Tolerance and resistance - Stress tolerance	Os04g0399800	LOC_Os04g32790.1				GO:0003677 - DNA binding, GO:0009266 - response to temperature stimulus, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000432 - temperature response trait	
10590	ERF83	OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163	ETHYLENE RESPONSE FACTOR 83	ethylene response factor 83, APETALA2/ethylene-responsive element binding protein 163	ETHYLENE RESPONSE FACTOR 83		3	TO:0000975: grain width.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity	Os03g0860100	LOC_Os03g64260.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0006952 - defense response, GO:0003700 - transcription factor activity, GO:0009266 - response to temperature stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000576 - stem length, TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0000040 - panicle length, TO:0000456 - spikelet number, TO:0000447 - filled grain number, TO:0000276 - drought tolerance, TO:0000432 - temperature response trait	PO:0009015 - portion of vascular tissue , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root 
10591	ERF85	OsERF#085, OsERF085, OsERF85, AP2/EREBP#151, AP2/EREBP151, AP2/EREBP#062, AP2/EREBP62	ETHYLENE RESPONSE FACTOR 85	ethylene response factor 85, APETALA2/ethylene-responsive element binding protein 151, APETALA2/ethylene-responsive element binding protein 62	ETHYLENE RESPONSE FACTOR 85		5	LOC_Os05g37640 (Os05g0448675 and Os05g0448700 by RAP DB ID converter).	 Other	Os05g0448700	LOC_Os05g37640.1						
10592	ERF87	OsERF#087, OsERF087, OsERF87, AP2/EREBP#067, AP2/EREBP67	ETHYLENE RESPONSE FACTOR 87	ethylene response factor 87, APETALA2/ethylene-responsive element binding protein 67	ETHYLENE RESPONSE FACTOR 87		9		 Other,  Character as QTL - Germination,  Seed - Physiological traits - Dormancy	Os09g0572000	LOC_Os09g39850.1				GO:0009873 - ethylene mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0048623 - seed germination on parent plant, GO:0006351 - transcription, DNA-dependent, GO:0010162 - seed dormancy	TO:0000619 - vivipary, TO:0000253 - seed dormancy	PO:0009009 - plant embryo , PO:0007632 - seed maturation stage 
10593	ERF88	OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23	ETHYLENE RESPONSE FACTOR 88	ethylene response factor 88, APETALA2/ethylene-responsive element binding protein 24, AP2/ERF Transcription Factor 23	ETHYLENE RESPONSE FACTOR 88		3	AY339376. OsAP23 might be a negative regulator ofthe salt stress response in higher plants (Zhuang et al. 2013).	 Other,  Tolerance and resistance - Stress tolerance	Os03g0150200	LOC_Os03g05590.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009266 - response to temperature stimulus, GO:0006351 - transcription, DNA-dependent, GO:0010200 - response to chitin, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000432 - temperature response trait	
10594	ERF89	OsERF#089, OsERF089, OsERF89, AP2/EREBP#154, AP2/EREBP154	ETHYLENE RESPONSE FACTOR 89	ethylene response factor 89, APETALA2/ethylene-responsive element binding protein 154	ETHYLENE RESPONSE FACTOR 89		10	LOC_Os10g30840. (Os10g0445100 in PMID:22807623).	 Other		LOC_Os10g30840				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0010200 - response to chitin		
10595	ERF90	OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71	ETHYLENE RESPONSE FACTOR 90	ethylene response factor 90, APETALA2/ethylene-responsive element binding protein 71	ETHYLENE RESPONSE FACTOR 90		8	LOC_Os08g44960. (Os08g0563600 in PMID:22807623).	 Other		LOC_Os08g44960				GO:0010200 - response to chitin, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10596	ERF94	OsERF#094, OsERF094, OsERF94, AP2/EREBP#039, AP2/EREBP39	ETHYLENE RESPONSE FACTOR 94	ethylene response factor 94, APETALA2/ethylene-responsive element binding protein 39	ETHYLENE RESPONSE FACTOR 94		4		 Other	Os04g0547600	LOC_Os04g46250.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10597	ERF95	OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2	ETHYLENE RESPONSE FACTOR 95	ethylene response factor 95, APETALA2/ethylene-responsive element binding protein 20, Salt tolerance activation 2	ETHYLENE RESPONSE FACTOR 95		2	LOC_Os02g43820.	 Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0655200	LOC_Os02g43820.1				GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0002661 - seed maturation, TO:0000590 - grain weight, TO:0001033 - relative spikelet number, TO:0000495 - chlorophyll content, TO:0000352 - plant dry weight, TO:0000442 - plant fresh weight	
10598	ERF97	OsERF#097, OsERF097, OsERF97, AP2/EREBP#038, AP2/EREBP38	ETHYLENE RESPONSE FACTOR 97	ethylene response factor 97, APETALA2/ethylene-responsive element binding protein 38	ETHYLENE RESPONSE FACTOR 97		4		 Other	Os04g0547500	LOC_Os04g46240.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10599	ERF98	OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120	ETHYLENE RESPONSE FACTOR 98	ethylene response factor 98, APETALA2/ethylene-responsive element binding protein 120	ETHYLENE RESPONSE FACTOR 98		2		 Other	Os02g0546600	LOC_Os02g34260.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10600	ERF99	OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2	ETHYLENE RESPONSE FACTOR 99	ethylene response factor 99, APETALA2/ethylene-responsive element binding protein 80, ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN2	ETHYLENE RESPONSE FACTOR 99		1	OsEREBP2 in Serra et al. 2013, Zhang et al. 2020.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0868000	LOC_Os01g64790.1				GO:0006351 - transcription, DNA-dependent, GO:0030912 - response to deep water, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance	
10601	ERF100	OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36	ETHYLENE RESPONSE FACTOR 100	ethylene response factor 100, APETALA2/ethylene-responsive element binding protein 36	ETHYLENE RESPONSE FACTOR 100		4		 Other	Os04g0429050	LOC_Os04g34970.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10602	ERF102	OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB	ETHYLENE RESPONSE FACTOR 102	ethylene response factor 102, APETALA2/ethylene-responsive element binding protein 123, ERF protein associated with tillering and panicle branching	ETHYLENE RESPONSE FACTOR 102		9	EU622934.	 Other	Os09g0457900	LOC_Os09g28440.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity, TO:0002675 - gibberellic acid content	
10603	ERF105	OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50	ETHYLENE RESPONSE FACTOR 105	ethylene response factor 105, APETALA2/ethylene-responsive element binding protein 50	ETHYLENE RESPONSE FACTOR 105		5		 Other	Os05g0437050/Os05g0437100	LOC_Os05g36100.1						
10604	ERF107	OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15	ETHYLENE RESPONSE FACTOR 107	ethylene response factor 107, APETALA2/ethylene-responsive element binding protein 15	ETHYLENE RESPONSE FACTOR 107		2		 Other	Os02g0521100	LOC_Os02g32140.1						
10605	ERF109	OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63, DLN223, OsDLN223	ETHYLENE RESPONSE FACTOR 109	ethylene response factor 109, APETALA2/ethylene-responsive element binding protein 63, DLN repressor 223, DLN motif protein 223	ETHYLENE RESPONSE FACTOR 109		9		 Other	Os09g0309700	LOC_Os09g13940.5, LOC_Os09g13940.4, LOC_Os09g13940.3, LOC_Os09g13940.2, LOC_Os09g13940.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10606	ERF110	OsERF#110, OsERF110, AP2/EREBP#008, AP2/EREBP8, SKL2, OsSKL2, SKL2-1, SKL2-2, SKL2-1Nipponbare, SKL2-2C9285	ETHYLENE RESPONSE FACTOR 110	ethylene response factor 110, APETALA2/ethylene-responsive element binding protein 8, SK-LIKE 2, SNORKEL-LIKE 2	ETHYLENE RESPONSE FACTOR 110		12	LOC_Os12g41030 (Os12g0602966 in PMID:22807623). LC651152 (SKL2-2). SKL2-1Nipponbare(normal cultivated rice Nipponbare SKL2), SKL2-2C9285 ((deepwater rice [O. sativa admixture C9285 (Dowai38/9)] SKL2)	 Other	Os12g0602966	LOC_Os12g41030.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10607	ERF111	OsERF#111, OsERF111, SKL4, OsSKL4, SKL4-1, SKL4-2, SKL4-1Nipponbare, SKL4-2C9285	ETHYLENE RESPONSE FACTOR 111	ethylene response factor 111, SK-LIKE 4, SNORKEL-LIKE 4	ETHYLENE RESPONSE FACTOR 111		12	LC651155 (SKL4-1), LC651156 (SKL4-2).	 Other	Os12g0603100	LOC_Os12g41040.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis, GO:0006351 - transcription, DNA-dependent		
10608	ERF112	OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9, SKL3, OsSKL3, SKL3-1, SKL3-2, SKL3-3, SKL3-1C9285, SKL3-2Nipponbare, SKL3-3C9285	ETHYLENE RESPONSE FACTOR 112	ethylene response factor 112, APETALA2/ethylene-responsive element binding protein 9, SK-LIKE 3, SNORKEL-LIKE 3	ETHYLENE RESPONSE FACTOR 112		12	LC651153 ( SKL3-1), LC651154 (SKL3-3). Two SKL3 genes (SKL3-1 and SKL3-3) are present in duplicate in the deepwater rice genome (Nagai et al. 2022). 	 Other,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os12g0603300	LOC_Os12g41060.1				GO:0006351 - transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0003700 - transcription factor activity, GO:0009413 - response to flooding, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000173 - ethylene sensitivity, TO:0000397 - grain size, TO:0000524 - submergence tolerance	
10609	ERF113	OsERF#113, OsERF113, AP2/EREBP#058, AP2/EREBP58	ETHYLENE RESPONSE FACTOR 113	ethylene response factor 113, APETALA2/ethylene-responsive element binding protein 58	ETHYLENE RESPONSE FACTOR 113		6		 Other	Os06g0636000	LOC_Os06g42990.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10610	ERF114	OsERF#114, OsERF114	ETHYLENE RESPONSE FACTOR 114	ethylene response factor 114	ETHYLENE RESPONSE FACTOR 114		6		 Other	Os06g0635700	LOC_Os06g42910.1						PO:0009089 - endosperm 
10611	ERF115	OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123	ETHYLENE RESPONSE FACTOR 115	ethylene response factor 115, APETALA2/ethylene-responsive element binding protein 110, endosperm-specific gene 123	ETHYLENE RESPONSE FACTOR 115		8	PO:0030104: caryopsis fruit. OsERF115 orthologs: Oryza glaberrima-OGLUM08G22130, Oryza rufipogon-A0A0E0QLD3, Oryza nivara-A0A0E0IEQ5, Oryza meridionalis-A0A0E0CEE1, Oryza punctata-OPUNC08G18940.1, Oryza brachyantha-XP_006660297.1.	 Other,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os08g0521600	LOC_Os08g41030.1				GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0051781 - positive regulation of cell division, GO:0051512 - positive regulation of unidimensional cell growth, GO:0010431 - seed maturation, GO:0010229 - inflorescence development, GO:0009723 - response to ethylene stimulus, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009960 - endosperm development	TO:0002661 - seed maturation, TO:0000173 - ethylene sensitivity, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0000621 - inflorescence development trait	PO:0009089 - endosperm , PO:0001083 - inflorescence development stage , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0007632 - seed maturation stage , PO:0007633 - endosperm development stage , PO:0009051 - spikelet , PO:0005360 - aleurone layer 
10612	ERF117	OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4, ABI4	ETHYLENE RESPONSE FACTOR 117	ethylene response factor 117, APETALA2/ethylene-responsive element binding protein 150	ETHYLENE RESPONSE FACTOR 117		5	C7J2Z1. GO:0044212: transcription regulatory region DNA binding.	 Other,  Tolerance and resistance - Stress tolerance	Os05g0351200	LOC_Os05g28350.1				GO:0005634 - nucleus, GO:0050826 - response to freezing, GO:0010449 - root meristem growth, GO:0009737 - response to abscisic acid stimulus, GO:0009749 - response to glucose stimulus, GO:0006970 - response to osmotic stress, GO:0010162 - seed dormancy, GO:0005983 - starch catabolic process, GO:0010182 - sugar mediated signaling, GO:0009414 - response to water deprivation, GO:0010228 - vegetative to reproductive phase transition, GO:0019915 - lipid storage, GO:0010353 - response to trehalose stimulus, GO:0048527 - lateral root development, GO:0009793 - embryonic development ending in seed dormancy, GO:0043565 - sequence-specific DNA binding, GO:0010896 - regulation of triglyceride catabolic process, GO:0009933 - meristem structural organization, GO:0006950 - response to stress, GO:0031930 - mitochondrial signaling pathway, GO:0009640 - photomorphogenesis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009909 - regulation of flower development, GO:0032880 - regulation of protein localization, GO:0016567 - protein ubiquitination, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10613	ERF118	OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117	ETHYLENE RESPONSE FACTOR 118	ethylene response factor 118, APETALA2/ethylene-responsive element binding protein 117	ETHYLENE RESPONSE FACTOR 118		11		 Other	Os11g0168500	LOC_Os11g06770.1, LOC_Os11g06770.2				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10614	ERF119	OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104, DLN161, OsDLN161	ETHYLENE RESPONSE FACTOR 119	ethylene response factor 119, APETALA2/ethylene-responsive element binding protein 104, DLN repressor 161, DLN motif protein 161	ETHYLENE RESPONSE FACTOR 119		6	LOC_Os06g10780 (Os06g0210300 in PMID:22807623).	 Other		LOC_Os06g10780.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10615	ERF120	OsERF#120, OsERF120, AP2/EREBP#105, AP2/EREBP105	ETHYLENE RESPONSE FACTOR 120	ethylene response factor 120, APETALA2/ethylene-responsive element binding protein 105	ETHYLENE RESPONSE FACTOR 120		6		 Other	Os06g0222400	LOC_Os06g11860.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
10616	ERF121	OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61, DLN174, OsDLN174	ETHYLENE RESPONSE FACTOR 121	ethylene response factor 121, APETALA2/ethylene-responsive element binding protein 61, DLN repressor 174, DLN motif protein 174	ETHYLENE RESPONSE FACTOR 121		6		 Other	Os06g0691100	LOC_Os06g47590.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10617	ERF122	OsERF#122, OsERF122, AP2/EREBP#056, AP2/EREBP56	ETHYLENE RESPONSE FACTOR 122	ethylene response factor 122, APETALA2/ethylene-responsive element binding protein 56	ETHYLENE RESPONSE FACTOR 122		6		 Other	Os06g0553700	LOC_Os06g36000.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10618	ERF123	OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66	ETHYLENE RESPONSE FACTOR 123	ethylene response factor 123, APETALA2/ethylene-responsive element binding protein 66	ETHYLENE RESPONSE FACTOR 123		9	LOC_Os09g39810.	 Tolerance and resistance - Disease resistance,  Other	Os09g0571700	LOC_Os09g39810.1				GO:0006351 - transcription, DNA-dependent, GO:0042742 - defense response to bacterium, GO:0010200 - response to chitin, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000175 - bacterial blight disease resistance	
10619	ERF125	OsERF#125, OsERF125, AP2/EREBP#016, AP2/EREBP16	ETHYLENE RESPONSE FACTOR 125	ethylene response factor 125, APETALA2/ethylene-responsive element binding protein 16	ETHYLENE RESPONSE FACTOR 125		2	LOC_Os02g34270 (Os02g0546800 in PMID:22807623).	 Other		LOC_Os02g34270				GO:0010200 - response to chitin, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10620	ERF126	OsERF#126, OsERF126	ETHYLENE RESPONSE FACTOR 126	ethylene response factor 126	ETHYLENE RESPONSE FACTOR 126		2		 Other	Os02g0767700	LOC_Os02g52880.1, LOC_Os02g52880.2				GO:0004812 - aminoacyl-tRNA ligase activity		
10621	ERF128	OsERF#128, OsERF128, AP2/EREBP#034, AP2/EREBP34	ETHYLENE RESPONSE FACTOR 128	ethylene response factor 128, APETALA2/ethylene-responsive element binding protein 34	ETHYLENE RESPONSE FACTOR 128		4		 Other	Os04g0257500	LOC_Os04g18650.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0010200 - response to chitin, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10622	ERF129	OsERF#129, OsERF129, AP2/EREBP#045, AP2/EREBP45	ETHYLENE RESPONSE FACTOR 129	ethylene response factor 129, APETALA2/ethylene-responsive element binding protein 45	ETHYLENE RESPONSE FACTOR 129		4		 Other	Os04g0655700	LOC_Os04g56150.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10623	MFS1	ERF130, OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165, DLN151, OsDLN151	MULTI-FLORET SPIKELET 1	ethylene response factor 130, APETALA2/ethylene-responsive element binding protein 165, DLN repressor 151, DLN motif protein 151, MULTI-FLORET SPIKELET1	ETHYLENE RESPONSE FACTOR 130	mfs1, mfs1-1, mfs1-2	5	TO:1000024: palea morphology trait. TO:0000972: spikelet rachilla length.	 Reproductive organ - Spikelet, flower, glume, awn,  Other	Os05g0497200	LOC_Os05g41760.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0010077 - maintenance of inflorescence meristem identity, GO:0010582 - floral meristem determinacy, GO:0048497 - maintenance of floral organ identity, GO:0006351 - transcription, DNA-dependent		PO:0000229 - flower meristem , PO:0009051 - spikelet , PO:0009029 - stamen , PO:0009036 - lodicule , PO:0009037 - lemma , PO:0009038 - palea , PO:0000230 - inflorescence meristem 
10624	ERF131	OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1	ETHYLENE RESPONSE FACTOR 131	ethylene response factor 131, APETALA2/ethylene-responsive element binding protein 94, SALT-RESPONSIVE ERF1	ETHYLENE RESPONSE FACTOR 131	serf1	5	JQ246414.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0420300	LOC_Os05g34730.1				GO:0009609 - response to symbiotic bacterium, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0000302 - response to reactive oxygen species, GO:0009610 - response to symbiotic fungus, GO:0009651 - response to salt stress	TO:0000333 - sugar content, TO:0006001 - salt tolerance	
10625	ERF132	OsERF#132, OsERF132, AP2/EREBP#010, AP2/EREBP10, DLN41, OsDLN41	ETHYLENE RESPONSE FACTOR 132	ethylene response factor 132, APETALA2/ethylene-responsive element binding protein 10, DLN repressor 41, DLN motif protein 41	ETHYLENE RESPONSE FACTOR 132		2	LOC_Os02g06330 (Os02g0158000 in PMID:22807623).	 Other		LOC_Os02g06330.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
10626	ERF133	OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m	ETHYLENE RESPONSE FACTOR 133	ethylene response factor 133, APETALA2/ethylene-responsive element binding protein 65, Dehydration-responsive element-binding protein 1H	ETHYLENE RESPONSE FACTOR 133		9	Q0J090. A2Z388. CK007053. ObDREB1m is the orthologous gene in O. brachyantha. GO:1901370: response to glutathione.	 Seed - Physiological traits - Dormancy,  Other,  Tolerance and resistance - Stress tolerance	Os09g0522100	LOC_Os09g35020.1				GO:0009609 - response to symbiotic bacterium, GO:0005634 - nucleus, GO:0009845 - seed germination, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0030912 - response to deep water, GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0006950 - response to stress	TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance	PO:0007022 - seed imbibition stage 
10627	ERF134	OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11, DLN46, OsDLN46	ETHYLENE RESPONSE FACTOR 134	ethylene response factor 134, APETALA2/ethylene-responsive element binding protein 11, DLN repressor 46, DLN motif protein 46	ETHYLENE RESPONSE FACTOR 134		2	LOC_Os02g09650 (Os02g0189600 (Chlorophyll a/b-binding protein , not found in IRGSP-1.0) in PMID:22807623) in Rashid et al. 2012.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Os02g09650.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000437 - male sterility	
10628	ERF135	OsERF#135, OsERF135	ETHYLENE RESPONSE FACTOR 135	ethylene response factor 135	ETHYLENE RESPONSE FACTOR 135		8	BAC99579.1a	 Other						GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
10629	ERF136	OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106	ETHYLENE RESPONSE FACTOR 136	ethylene response factor 136, APETALA2/ethylene-responsive element binding protein 106	ETHYLENE RESPONSE FACTOR 136		7	LOC_Os07g22730.	 Other	Os07g0410300	LOC_Os07g22730.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
10630	ERF137	OsERF#137, OsERF137, AP2/EREBP136, AP2/EREBP#136	ETHYLENE RESPONSE FACTOR 137	ethylene response factor 137, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 136	ETHYLENE RESPONSE FACTOR 137		3	LOC_Os03g02650.	 Other	Os03g0117900	LOC_Os03g02650.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10631	ERF138	OsERF#138, OsERF138, AP2/EREBP#108, AP2/EREBP108	ETHYLENE RESPONSE FACTOR 138	ethylene response factor 138, APETALA2/ethylene-responsive element binding protein 108	ETHYLENE RESPONSE FACTOR 138		8		 Other	Os08g0360800	LOC_Os08g27220.1, LOC_Os08g27230.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10632	ERF139	OsERF#139, OsERF139	ETHYLENE RESPONSE FACTOR 139	ethylene response factor 139	ETHYLENE RESPONSE FACTOR 139		6	LOC_Os06g09730 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Other								
10633	ERF140	OsERF#140, OsERF140, AP2/EREBP#013, AP2/EREBP13	ETHYLENE RESPONSE FACTOR 140	ethylene response factor 140, APETALA2/ethylene-responsive element binding protein 13	ETHYLENE RESPONSE FACTOR 140		2		 Other	Os02g0499000	LOC_Os02g29550.1, LOC_Os02g29550.2, LOC_Os02g29550.3						
10634	ERF141	OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19	ETHYLENE RESPONSE FACTOR 141	ethylene response factor 141, APETALA2/ethylene-responsive element binding protein 19	ETHYLENE RESPONSE FACTOR 141		2	regulated by osa-miR528-5p and novel13_mature, indirectly ( Liu et al. 2020).	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other,  Tolerance and resistance - Stress tolerance	Os02g0638650	LOC_Os02g42585.1				GO:0048653 - anther development, GO:0005634 - nucleus, GO:0009266 - response to temperature stimulus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0010208 - pollen wall assembly, GO:0003700 - transcription factor activity, GO:0009555 - pollen development	TO:0000432 - temperature response trait, TO:0000437 - male sterility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
10635	NGR5	ERF142, OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1, OsNGR5, GR5, OsGR5	NITROGEN-MEDIATED TILLER GROWTH RESPONSE 5	ethylene response factor 142, APETALA2/ethylene-responsive element binding protein 49, small organ size1, small organ size 1, SHOEBOX, shoebox, reduced leaf angle1, reduced leaf angle 1, GRAIN ROUND 5	ETHYLENE RESPONSE FACTOR 142	smos1, smos1-1, smos1-2, smos1-3, sub, rla1, gr5-1, gr5-2	5	an unusual APETALA2 (AP2)-type transcription factor with an imperfect AP2 domain. AB897877. Transcriptome analysis in rice smos1 mutant: GEOID: GSE54357 GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1900457: regulation of brassinosteroid mediated signaling pathway. GO:1902347: response to strigolactone. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Other,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root	Os05g0389000	LOC_Os05g32270.2, LOC_Os05g32270.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009826 - unidimensional cell growth, GO:0009845 - seed germination, GO:0009741 - response to brassinosteroid stimulus, GO:0016049 - cell growth, GO:0008283 - cell proliferation, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0000226 - microtubule cytoskeleton organization, GO:0042127 - regulation of cell proliferation, GO:0001558 - regulation of cell growth, GO:0009734 - auxin mediated signaling pathway, GO:0009742 - brassinosteroid mediated signaling, GO:0006808 - regulation of nitrogen utilization, GO:0009755 - hormone-mediated signaling, GO:0003677 - DNA binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0002692 - root meristem development, TO:0002684 - plant cell size, TO:0000163 - auxin sensitivity, TO:0000397 - grain size, TO:0002730 - grain shape, TO:0000399 - grain thickness, TO:0000382 - 1000-seed weight, TO:0000371 - yield trait, TO:0000329 - tillering ability, TO:0002637 - leaf size, TO:0000227 - root length, TO:0000346 - tiller number, TO:0000391 - seed size, TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0002601 - stamen size, TO:0002602 - pistil size, TO:0001035 - stem width, TO:0000734 - grain length	PO:0007527 - 2 root meristem formation stage , PO:0006085 - root meristem , PO:0009047 - stem , PO:0007057 - 0 seed germination stage , PO:0009049 - inflorescence 
10636	ERF143	OsERF#143, OsERF143	ETHYLENE RESPONSE FACTOR 143	ethylene response factor 143	ETHYLENE RESPONSE FACTOR 143		6		 Other	Os06g0197600	LOC_Os06g09717.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent		
10637	ERF144	OsERF#144, OsERF144	ETHYLENE RESPONSE FACTOR 144	ethylene response factor 144	ETHYLENE RESPONSE FACTOR 144		10	LOC_Os10g26590.	 Other		LOC_Os10g26590				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
10638	ERF145	OsERF#145, OsERF145	ETHYLENE RESPONSE FACTOR 145	ethylene response factor 145	ETHYLENE RESPONSE FACTOR 145		12	LOC_Os12g40960.	 Other		LOC_Os12g40960				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity		
10639	AP2/EREBP47	AP2/EREBP#047	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 47	APETALA2/ethylene-responsive element binding protein 47	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 47		2	AP004768.3	 Other								
10640	ERF8	OsERF#008, OsERF008, OsERF8, AP2/EREBP#128, AP2/EREBP128, DLN123, OsDLN123	ETHYLENE RESPONSE FACTOR 8	ethylene response factor 8, APETALA2/ethylene-responsive element binding protein 128, DLN repressor 123, DLN motif protein 123	ETHYLENE RESPONSE FACTOR 8		4		 Other	Os04g0648900	LOC_Os04g55520.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
10641	ERF13	OsERF#013, OsERF013, OsERF13, AP2/EREBP#143, AP2/EREBP143	ETHYLENE RESPONSE FACTOR 13	ethylene response factor 13, APETALA2/ethylene-responsive element binding protein 143	ETHYLENE RESPONSE FACTOR 13		6		 Other	Os06g0223100	LOC_Os06g11940.1						
10642	AP2/EREBP77	AP2/EREBP#077, OsRAV1, RAV1, OsRAV8, RAV8	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 77	APETALA2/ethylene-responsive element binding protein 77, related to ABI3/VP1-1, RAV subfamily member 1	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 77		1	Q9AWS7. RELATED TO ABI3 AND VP1 (RAV) family of transcription factor. OsRAV8 in Osnato et al. 2020.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0140700	LOC_Os01g04750.1				GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0003700 - transcription factor activity	TO:0000524 - submergence tolerance	
10643	AP2/EREBP129	AP2/EREBP#129, OsRAV2, RAV2, OsRAV9/OsTEM1, OsRAV9/OsTEM1, OsRAV9, OsTEM1, RAV9, TEM1	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 129	APETALA2/ethylene-responsive element binding protein 129, related to ABI3/VP1-2, RAV subfamily member 2, TEMPRANILLO1	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 129		1	Q9AWS0.  OsRAV9/OsTEM1 in Osnato et al. 2020. RELATED TO ABI3 AND VP1 (RAV) family of transcription factor. GO:2000028: regulation of photoperiodism, flowering.	 Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os01g0141000	LOC_Os01g04800.1				GO:0006351 - transcription, DNA-dependent, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0003006 - reproductive developmental process, GO:0003677 - DNA binding, GO:0048366 - leaf development, GO:0009751 - response to salicylic acid stimulus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress, GO:0048527 - lateral root development, GO:0048573 - photoperiodism, flowering, GO:0009910 - negative regulation of flower development, GO:0007623 - circadian rhythm	TO:0006001 - salt tolerance, TO:0000137 - days to heading	PO:0025034 - leaf , PO:0020148 - shoot apical meristem , PO:0008039 - stem base , PO:0009005 - root 
10644	AP2/EREBP127	AP2/EREBP#127, OsRAV11, RAV11, OsRAV1, RAV1	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 127	APETALA2/ethylene-responsive element binding protein 127, RAV transcription factor 11, RELATED TO ABI3 AND VP1	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 127	osrav1, osrav1-1, osrav1-2	1	Q8RZX9. a rice RAV subfamily member. RELATED TO ABI3 AND VP1 (RAV) family of transcription factor.	 Character as QTL - Germination,  Vegetative organ - Root,  Other,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits,  Tolerance and resistance - Stress tolerance	Os01g0693400	LOC_Os01g49830.1				GO:0030912 - response to deep water, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0007623 - circadian rhythm, GO:0048440 - carpel development, GO:0010229 - inflorescence development, GO:0009699 - phenylpropanoid biosynthetic process, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0010029 - regulation of seed germination, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000280 - seedling vigor, TO:0000653 - seed development trait, TO:0000430 - germination rate, TO:0000345 - seed viability, TO:0000644 - relative root dry weight, TO:0000636 - relative shoot dry weight, TO:0000227 - root length, TO:0000524 - submergence tolerance, TO:0000552 - shoot dry weight, TO:0000621 - inflorescence development trait, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000019 - seedling height, TO:0000391 - seed size, TO:0000516 - relative root length, TO:0000078 - root dry weight	PO:0008039 - stem base , PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0020104 - leaf sheath , PO:0009089 - endosperm , PO:0007022 - seed imbibition stage , PO:0007057 - 0 seed germination stage , PO:0009009 - plant embryo 
10645	AP2/EREBP79	AP2/EREBP#079	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 79	APETALA2/ethylene-responsive element binding protein 79	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 79		1		 Other	Os01g0813300	LOC_Os01g59780.1						
10648	AP2/EREBP22	AP2/EREBP#022	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 22	APETALA2/ethylene-responsive element binding protein 22, BABY BOOM 1-LIKE	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 22		2		 Other	Os02g0747600	LOC_Os02g51300.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
10649	AP2/EREBP139	AP2/EREBP#139	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 139	APETALA2/ethylene-responsive element binding protein 139	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 139		2		 Other	Os02g0767800							
10651	AP2/EREBP85	AP2/EREBP#085, DRD1, OsDRD1, CHR730, OsCHR730	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 85	APETALA2/ethylene-responsive element binding protein 85, chromatin remodeling factor 730	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 85		3	a putative meiosis-related gene. GO:0140658: ATP-dependent chromatin remodeler activity. GO:0080188: gene silencing by RNA-directed DNA methylation.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0165266 	LOC_Os03g06920.1				GO:0004386 - helicase activity, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0007126 - meiosis, GO:0005634 - nucleus, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
10654	AP2/EREBP86	AP2/EREBP#086	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 86	APETALA2/ethylene-responsive element binding protein 86	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 86		3		 Other	Os03g0313100	LOC_Os03g19900.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10659	AP2/EREBP92	AP2/EREBP#092	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 92	APETALA2/ethylene-responsive element binding protein 92	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 92		5		 Other	Os05g0356201	LOC_Os05g28800.1						
10660	WRI3	AP2/EREBP52, AP2/EREBP#052, ERF52, OsWRI3	WRINKLED3	APETALA2/ethylene-responsive element binding protein 52, WRINKLED 3, WRI1 like protein 3	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 52		5		 Other	Os05g0536250	LOC_Os05g45954.1						PO:0025034 - leaf 
10661	AP2/EREBP96	AP2/EREBP#096, OsRAV12, RAV12, OsEREBP96, EREBP96	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 96	APETALA2/ethylene-responsive element binding protein 96, RAV transcription factor 12	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 96		5	Q6L4H4. miR444d.2-target. RELATED TO ABI3 AND VP1 (RAV) family of transcription factor.. a rice RAV subfamily member.	 Seed - Morphological traits - Grain shape,  Other	Os05g0549800	LOC_Os05g47650.1				GO:0048440 - carpel development, GO:0007623 - circadian rhythm, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity	TO:0000391 - seed size	PO:0025034 - leaf , PO:0009005 - root 
10662	WRI4	AP2/EREBP99, AP2/EREBP#099, OsWRI4	WRINKLED4	APETALA2/ethylene-responsive element binding protein 99, WRINKLED 4, WRI1 like protein 4	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 99		6		 Other	Os06g0145700	LOC_Os06g05340.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10663	AP2/EREBP31	AP2/EREBP#031	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 31	APETALA2/ethylene-responsive element binding protein 31	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 31		6	AP006056.	 Other								
10664	AP2/EREBP101	AP2/EREBP#101	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 101	APETALA2/ethylene-responsive element binding protein 101	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 101		6	LOC_Os06g09717 (Os06g0197600 by RAP DB ID converter, Os06g0197200 in PMID:22807623).	 Other	Os06g0197600 	LOC_Os06g09717.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
10665	AP2/EREBP59	AP2/EREBP#059, AP2-4	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 59	APETALA2/ethylene-responsive element binding protein 59, APETALA2-4	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 59		6	LOC_Os06g43220. AP2-4 in Dai et al. 2016.	 Seed - Morphological traits,  Other	Os06g0639200	LOC_Os06g43220.1				GO:0003700 - transcription factor activity	TO:0000397 - grain size, TO:0000382 - 1000-seed weight	
10668	AP2/EREBP68	AP2/EREBP#068	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 68	APETALA2/ethylene-responsive element binding protein 68	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 68		8		 Other	Os08g0171100	LOC_Os08g07440.1				GO:0003700 - transcription factor activity		
10669	LFS	AP2/EREBP#109, AP2/EREBP109, OsAP2/EREBP109, OsLFS	LATE FLOWERING SEMI-DWARF	APETALA2/ethylene-responsive element binding protein 109	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 109	lfs, lfs-1, lfs-2	8	HQ858820. AP2-EREBP transcription factor.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Reproductive organ - panicle	Os08g0442400	LOC_Os08g34360.1				GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0010187 - negative regulation of seed germination, GO:0006351 - transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0040008 - regulation of growth, GO:0007623 - circadian rhythm	TO:0000382 - 1000-seed weight, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000137 - days to heading, TO:0002675 - gibberellic acid content, TO:0002616 - flowering time	
10670	AP2/EREBP153	AP2/EREBP#153	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 153	APETALA2/ethylene-responsive element binding protein 153	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 153		9		 Tolerance and resistance - Stress tolerance	Os09g0423800	LOC_Os09g25600.1				GO:0040008 - regulation of growth, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0010187 - negative regulation of seed germination, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
10671	WRI1-1	AP2/EREBP131, AP2/EREBP#131, OsWRI1-1, OsWRI1a, WRI1a	WRINKLED1-1	APETALA2/ethylene-responsive element binding protein 131, WRINKLED 1-1, WRI1 like protein 1-1, WRINKLED1a, WRINKLED 1a	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 131		11	AJ575217.	 Vegetative organ - Leaf,  Vegetative organ - Root,  Reproductive organ - panicle,  Seed,  Other,  Coloration - Chlorophyll,  Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os11g0129700	LOC_Os11g03540.1				GO:0048573 - photoperiodism, flowering, GO:0045821 - positive regulation of glycolysis, GO:0045723 - positive regulation of fatty acid biosynthetic process, GO:0046889 - positive regulation of lipid biosynthetic process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000207 - plant height, TO:0000495 - chlorophyll content, TO:0000620 - embryo development trait, TO:0000653 - seed development trait, TO:0002759 - grain number, TO:0002616 - flowering time, TO:0000590 - grain weight, TO:0000326 - leaf color, TO:0002681 - leaf curling, TO:0000227 - root length, TO:0000145 - internode length, TO:0000357 - growth and development trait, TO:0000604 - fat and essential oil content, TO:0000040 - panicle length, TO:0000137 - days to heading, TO:0000382 - 1000-seed weight, TO:0000135 - leaf length	PO:0000003 - whole plant , PO:0009005 - root , PO:0009009 - plant embryo 
10673	WRI1-2	AP2/EREBP155, AP2/EREBP#155, OsWRI1-2, OsWRI1b, WRI1b	WRINKLED1-2	APETALA2/ethylene-responsive element binding protein 155, WRINKLED 1-2, WRI1 like protein 1-2, WRINKLED1b, WRINKLED 1b	APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 155		12		 Other	Os12g0126300	LOC_Os12g03290.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006110 - regulation of glycolysis, GO:0019432 - triglyceride biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0009744 - response to sucrose stimulus, GO:0003700 - transcription factor activity		PO:0009009 - plant embryo , PO:0000003 - whole plant , PO:0009005 - root 
10674	_	BFL1	_	BRANCHED FLORETLESS 1		bfl1	7	AP004570, P0625E02.25. BFL1 is most probably a rice ortholog of the maize ERF (EREBP/AP2) transcription factor gene BD1. Based on the similarities in mutant phenotypes bfl1 is likely to be an allele of the previously reported frizzy panicle locus.	 Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0010074 - maintenance of meristem identity	TO:0000621 - inflorescence development trait, TO:0006017 - meristem identity	
10675	_	atp6-orfH79	_	CMS-associated transcript atp6-orfH79	_		Mt		 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000350 - cms-hl type, TO:0000053 - pollen sterility	
10678	MPK16	OsMPK16, OsMPK15, MPK15, OsMAPK16, MAPK16	MAP KINASE 16	MAP kinase 16	MAP KINASE 16	mpk15, mpk15-1, mpk15-2	11	Q53N72. OsMPK15 in Hong et al. 2019. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Biochemical character,  Seed - Morphological traits	Os11g0271100	LOC_Os11g17080.3, LOC_Os11g17080.2, LOC_Os11g17080.1				GO:0031348 - negative regulation of defense response, GO:0005773 - vacuole, GO:0009863 - salicylic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0004707 - MAP kinase activity, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0000165 - MAPKKK cascade, GO:0005524 - ATP binding, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000180 - spikelet fertility, TO:0000592 - 1000-dehulled grain weight, TO:0000449 - grain yield per plant, TO:0000391 - seed size, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000605 - hydrogen peroxide content, TO:0000734 - grain length	
10679	MPK20-1	OsMPK20-1, OsMAPK10, MAPK10	MAP KINASE 20-1	MAP kinase 20-1	MAP KINASE 20-1		1	Q5ZCI1. OsMAPK10 in Chen et al. 2022. GO:2000652: regulation of secondary cell wall biogenesis	 Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0629900	LOC_Os01g43910.1				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009834 - secondary cell wall biogenesis, GO:0004707 - MAP kinase activity, GO:0000165 - MAPKKK cascade	TO:0000207 - plant height, TO:0000276 - drought tolerance, TO:0000731 - lignin content	
10680	_	OsMPK20-3, MPK20-3, OsMAPK11, MAPK11	_	MAP kinase 20-3	_		6	Q5VN19. OsMAPK11 in Fang et al. 2020.	 Biochemical character	Os06g0367900	LOC_Os06g26340.3, LOC_Os06g26340.1, LOC_Os06g26340.2				GO:0000165 - MAPKKK cascade, GO:0004707 - MAP kinase activity, GO:0005524 - ATP binding		
10681	WJUMK1	OsMPK20-4, MPK20-4, OsWJUMK, OsWJUMK1, WJUMK, MAPK8, OsMPK8, MPK8, OsMAPK20-4, MAPK20-4, OsMPKG1, MPKG1	WOUND- AND JA-UNINDUCIBLE MAP KINASE 1	MAP kinase 20-4, Wound- and JA-uninducible MAP kinase 1	WOUND- AND JA-UNINDUCIBLE MAP KINASE 1		1	Q5SN53. AJ512643. MAPK8 in Katsuragi et al. 2008. OsMPK8 in Nanda et al. 2018. an osa-miR159b target gene.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0665200	LOC_Os01g47530.3, LOC_Os01g47530.4, LOC_Os01g47530.2, LOC_Os01g47530.1				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0002237 - response to molecule of bacterial origin, GO:0004707 - MAP kinase activity, GO:0000165 - MAPKKK cascade	TO:0000615 - abscisic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
10682	_	OsWD40-1, WD40-1, OsWD40, WD40, OsDWD68, DWD68	_	WD-40 repeat domain-containing protein, DWD motif- containing protein 68			1	LOC_Os01g03510.1		Os01g0125800	LOC_Os01g03510.1				GO:0030864 - cortical actin cytoskeleton, GO:0051015 - actin filament binding, GO:0042643 - actomyosin, actin part, GO:0030836 - positive regulation of actin filament depolymerization, GO:0030042 - actin filament depolymerization, GO:0005634 - nucleus		
10683	_	OsWD40-2, UV-DDB2, OsUV-DDB2, OsDWD10, DWD10	_	UV-damaged DNA binding protein 2, Ultraviolet-damaged DNA binding protein 2, DWD motif- containing protein 10			1	AK082381. AB082381.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0141700	LOC_Os01g04870.1				GO:0006281 - DNA repair, GO:0005634 - nucleus, GO:0010224 - response to UV-B		
10685	_	OsWD40-4	_				1			Os01g0177100	LOC_Os01g08190.1, LOC_Os01g08190.2, LOC_Os01g08190.3, LOC_Os01g08190.5						
10686	_	OsWD40-5, OsDWD13, DWD13	_	DWD motif- containing protein 13			1			Os01g0183100	LOC_Os01g08770.1						
10687	CBE1	OsWD40-6, OsCBE1	CULLIN4-BASED E3 UBIQUITIN LIGASE 1	Cullin4-Based E3 ubiquitin ligase1	CULLIN4-BASED E3 UBIQUITIN LIGASE 1	Oscbe1, Oscbe1-1, Oscbe1-2	1	a substrate receptor of Cullin4-based E3 ubiquitin ligase complex (C4E3).	 Reproductive organ - Panicle, Mode of branching,  Seed - Physiological traits - Dormancy,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os01g0185400	LOC_Os01g09020.1				GO:0009738 - abscisic acid mediated signaling, GO:0010029 - regulation of seed germination, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0002759 - grain number, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000316 - photosynthetic ability, TO:0001016 - relative chlorophyll content, TO:0000152 - panicle number, TO:0000303 - cold tolerance	
10688	_	OsWD40-7, OsDWD35, DWD35	_	DWD motif- containing protein 35			1			Os01g0187500	LOC_Os01g09252.1						
10689	_	OsWD40-8	_				1			Os01g0205100	LOC_Os01g10790.1						
10690	PUB71	OsWD40-9, OsPUB71, OsPUB71, PUB71	PLANT U-BOX-CONTAINING PROTEIN 71	plant U-box-containing protein 71, U-box protein 71, U-box-type E3 ubiquitin ligase 71	PLANT U-BOX-CONTAINING PROTEIN 71		1	class VI PUB protein (U-box + WD40).	 Biochemical character	Os01g0229700	LOC_Os01g12930.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
10691	_	OsWD40-10	_				1			Os01g0232200	LOC_Os01g13140.1						
10692	_	OsWD40-11, OsDWD22, DWD22	_	DWD motif- containing protein 22			1			Os01g0238900	LOC_Os01g13730.1				GO:0080008 - CUL4 RING ubiquitin ligase complex		
10693	WD40-12	OsWD40-12, TPR1, OsTPR1	WD40 PROTEIN 12	TOPLESS-RELATED PROTEIN 1	WD40 PROTEIN 12		1	Q5NBT9.	 Other	Os01g0254100	LOC_Os01g15020.2, LOC_Os01g15020.1				GO:0048608 - reproductive structure development, GO:0009791 - post-embryonic development, GO:0048367 - shoot development, GO:0003714 - transcription corepressor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010072 - primary shoot apical meristem specification		
10694	_	OsWD40-13, OsDWD62, DWD62	_	DWD motif- containing protein 62			1			Os01g0322800	LOC_Os01g21940.1				GO:0008380 - RNA splicing, GO:0005634 - nucleus		
10695	WD40-14	OsWD40-14, OsDWD36, DWD36	WD40 PROTEIN 14	WD40 protein 14, DWD motif- containing protein 36	WD40 PROTEIN 14		1	CT832474. an OsTTG1 paralogous gene. similar to LEC14B gene.		Os01g0383700	LOC_Os01g28680.9, LOC_Os01g28680.8, LOC_Os01g28680.7, LOC_Os01g28680.5, LOC_Os01g28680.4, LOC_Os01g28680.1, LOC_Os01g28680.10, LOC_Os01g28680.12, LOC_Os01g28680.13, LOC_Os01g28680.2, LOC_Os01g28680.3						
10696	_	OsWD40-15, OsDWD64, DWD64	_	DWD motif- containing protein 64			1			Os01g0551900	LOC_Os01g37120.1						
10697	SCD1	OsWD40-16, WD40-16, OsSCD1, OsDWD31, DWD31	STOMATAL CYTOKINESIS DEFECTIVE1	STOMATAL CYTOKINESIS DEFECTIVE 1, DWD motif- containing protein 31			1			Os01g0575500	LOC_Os01g39380.1, LOC_Os01g39380.2, LOC_Os01g39380.3				GO:0010235 - guard mother cell cytokinesis, GO:0005886 - plasma membrane, GO:0031410 - cytoplasmic vesicle, GO:0045824 - negative regulation of innate immune response, GO:0032483 - regulation of Rab protein signal transduction, GO:0030136 - clathrin-coated vesicle, GO:0009825 - multidimensional cell growth		
10698	_	OsWD40-17, OsLUGL, LUGL, KKX, OsKKX	_	LEUNIG-like transcriptional regulator, KAIKOUXIAO, LEUNIG-like, LEUNIG		kkx	1	PO:0030123: panicle inflorescence. TO:0000845: collective phyllome structure morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Seed - Morphological traits	Os01g0607400	LOC_Os01g42260.4, LOC_Os01g42260.3, LOC_Os01g42260.2, LOC_Os01g42260.1				GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0009908 - flower development, GO:0048449 - floral organ formation, GO:0009734 - auxin mediated signaling pathway	TO:0000485 - sterility related trait, TO:0000184 - seed anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0002672 - auxin content	PO:0025127 - primordium , PO:0006327 - spikelet meristem , PO:0001083 - inflorescence development stage , PO:0000229 - flower meristem , PO:0025477 - floral organ primordium 
10699	_	OsWD40-18, WD40-18, LUG, DLN14, OsDLN14	_	transcriptional corepressor LEUNIG, LEUNIG, DLN repressor 14, DLN motif protein 14			1			Os01g0607600	LOC_Os01g42270.1				GO:0005634 - nucleus, GO:0009908 - flower development		
10700	SEH1	OsWD40-19, WD40-19, OsSEH1	NUCLEOPORIN SEH1	nucleoporin SEH1, WD40 protein 19	NUCLEOPORIN SEH1	osseh1, osseh1-1, osseh1-2	1	highly similar to Arabidopsis thaliana (Seh1). GO:0035859: Seh1-associated complex. GO:1904263: positive regulation of TORC1 signaling.	 Tolerance and resistance - Stress tolerance	Os01g0620100	LOC_Os01g43250.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0009687 - abscisic acid metabolic process, GO:0031080 - Nup107-160 complex, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0005198 - structural molecule activity, GO:0034198 - cellular response to amino acid starvation, GO:0045454 - cell redox homeostasis, GO:0009699 - phenylpropanoid biosynthetic process, GO:0015031 - protein transport	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content, TO:0000340 - total soluble sugar content, TO:0000516 - relative root length, TO:0001034 - relative plant height, TO:0000290 - flavonoid content, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity	
10701	_	OsWD40-20, OsDWD67, DWD67	_	DWD motif- containing protein 67			1			Os01g0635400	LOC_Os01g44394.1						
10703	_	OsWD40-22	_				1			Os01g0702400	LOC_Os01g50690.1				GO:0030833 - regulation of actin filament polymerization, GO:0005856 - cytoskeleton		
10704	FVE	OsWD40-23, WD40-23, OsFVE, OsDWD5, DWD5	_	DWD motif- containing protein 5			1	DQ132808. a rice gene homologous to Arabidopsis FVE. GO:2000028: regulation of photoperiodism, flowering.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os01g0710000	LOC_Os01g51300.1, LOC_Os01g51300.2				GO:0009908 - flower development, GO:0009826 - unidimensional cell growth, GO:0005737 - cytoplasm, GO:0005730 - nucleolus, GO:0046872 - metal ion binding, GO:0048573 - photoperiodism, flowering, GO:0009409 - response to cold, GO:0010090 - trichome morphogenesis, GO:0009965 - leaf morphogenesis	TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000303 - cold tolerance	
10705	WD40-24	OsWD40-24, OsSPA3/4, OsDWD75, DWD75	WD40-REPEAT TRANSCRIPTION FACTOR 24	SPA3/4-like, DWD motif- containing protein 75	WD40-REPEAT TRANSCRIPTION FACTOR 24		1	one of rice SPA orthologs. target of Osa-miR396. miR5144-5p-target.		Os01g0725800	LOC_Os01g52640.3				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
10706	_	OsWD40-25	_				1			Os01g0776400	LOC_Os01g56860.1						
10707	_	OsWD40-26, OsKTN80c, OsDWD8, DWD8	_	katanin P80c, Katanin regulatory subunit P80c, DWD motif- containing protein 8			1	a katanin P80 ortholog. a microtubule-severing enzyme.		Os01g0780400	LOC_Os01g57210.1, LOC_Os01g57210.2				GO:0051013 - microtubule severing, GO:0008352 - katanin complex		
10709	_	OsWD40-28	_				1			Os01g0857900	LOC_Os01g63900.1						
10710	_	OsWD40-29	_				1			Os01g0924300	LOC_Os01g69970.1						
10712	_	OsWD40-31	_				1			Os01g0946100	LOC_Os01g71780.1						
10713	_	OsWD40-32, OsFY, FY, OsDWD32, DWD32	_	DWD motif- containing protein 32			1	DQ132809. a Homolog of AtFY. KC611002-KC611014 (O. sativa and wild rice species, partial cds).	 Reproductive organ - Heading date	Os01g0951000	LOC_Os01g72220.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0010162 - seed dormancy, GO:0050826 - response to freezing, GO:0009909 - regulation of flower development, GO:0010564 - regulation of cell cycle process, GO:0016567 - protein ubiquitination, GO:0006470 - protein amino acid dephosphorylation, GO:0030422 - production of siRNA involved in RNA interference, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0010072 - primary shoot apical meristem specification, GO:0043687 - post-translational protein modification, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009640 - photomorphogenesis, GO:0009845 - seed germination, GO:0005623 - cell, GO:0000278 - mitotic cell cycle, GO:0010074 - maintenance of meristem identity, GO:0051301 - cell division, GO:0048825 - cotyledon development, GO:0001700 - embryonic development via the syncytial blastoderm, GO:0009880 - embryonic pattern specification, GO:0006406 - mRNA export from nucleus, GO:0007062 - sister chromatid cohesion, GO:0006397 - mRNA processing, GO:0031124 - mRNA 3'-end processing, GO:0009793 - embryonic development ending in seed dormancy, GO:0019915 - lipid storage, GO:0016570 - histone modification, GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0048449 - floral organ formation, GO:0010182 - sugar mediated signaling, GO:0010228 - vegetative to reproductive phase transition		
10714	CCS52B	OsWD40-33, WD40-33, OsCCS52B, OsCCS52B, CCS52B, OsCDH1B, CDH1B	CELL CYCLE SWITCH 52 B	cell cycle switch 52 B, cell cycle switch 52B, B-type cell cycle switch 52, APC-type E3 ubiquitin ligase OsCCS52B	CELL CYCLE SWITCH 52 B		1	OsCCS52B may be involved in cell expansion regulation in rice endosperm. GO:1990757: ubiquitin ligase activator activity. GO:1905786: positive regulation of anaphase-promoting complex-dependent catabolic process. GO:0097027: ubiquitin-protein transferase activator activity. GO:1904668: positive regulation of ubiquitin protein ligase activity.	 Seed - Morphological traits	Os01g0972900	LOC_Os01g74146.1				GO:0005680 - anaphase-promoting complex, GO:0010997 - anaphase-promoting complex binding, GO:0051445 - regulation of meiotic cell cycle, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	TO:0000730 - mitotic cell cycle trait	PO:0020003 - plant ovule , PO:0020021 - integument , PO:0000002 - anther wall 
10715	_	OsWD40-34, OsRUP, OsDWD72, DWD72	_	DWD motif- containing protein 72			2	CT835316. LOC_Os02g02380.		Os02g0114900	LOC_Os02g02380.1						
10716	_	OsWD40-35	_				2			Os02g0132800	LOC_Os02g03990.1						
10717	_	OsWD40-36	_				2	AK11732, CT832588, AB055156.		Os02g0135800	LOC_Os02g04320.1, LOC_Os02g04320.2				GO:0005730 - nucleolus		
10718	_	OsWD40-37	_				2	CT830604, CT835453, CT835452.		Os02g0162700	LOC_Os02g06720.1						
10719	_	OsWD40-38	_				2	CT833519.		Os02g0205400	LOC_Os02g11060.1				GO:0016301 - kinase activity		
10720	_	OsWD40-39, OsDWD3, DWD3	_	DWD motif- containing protein 3			2			Os02g0245100	LOC_Os02g14790.1				GO:0006625 - protein targeting to peroxisome		
10721	SLG2	OsWD40-40, WD40-40, OsDWD60, DWD60, OsSLG2	SLENDER GUY 2	WD40 protein 40, DWD motif- containing protein 60, SLENDER GUY2	WD40 PROTEIN 40	slg2	2	TO:0000975: grain width. PO:0030123: panicle inflorescence. TO:0020103: adventitious root length.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Root	Os02g0290300	LOC_Os02g18820.1, LOC_Os02g18820.2				GO:0005634 - nucleus, GO:0048367 - shoot development, GO:0030307 - positive regulation of cell growth, GO:0048364 - root development, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048316 - seed development	TO:0000654 - shoot development trait, TO:0000653 - seed development trait, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000656 - root development trait, TO:0001006 - adventitious root number, TO:0000227 - root length, TO:0000447 - filled grain number	PO:0001170 - seed development stage , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0007520 - root development stage , PO:0009005 - root , PO:0025527 - shoot system development stage , PO:0020103 - flag leaf , PO:0009082 - spikelet floret , PO:0009049 - inflorescence 
10722	_	OsWD40-41	_				2			Os02g0294600	LOC_Os02g19210.1, LOC_Os02g19210.2						
10723	_	OsWD40-42, OsDWD51, DWD51	_	DWD motif- containing protein 51			2			Os02g0307200	LOC_Os02g20430.1				GO:0010224 - response to UV-B, GO:0006281 - DNA repair, GO:0005634 - nucleus		
10724	_	OsWD40-43, OsDWD7, DWD7	_	DWD motif- containing protein 7			2			Os02g0319800	LOC_Os02g21490.1						
10725	_	OsWD40-44	_				2			Os02g0539900	LOC_Os02g33630.1						
10726	WD40-45	OsWD40-45, OsSGW5, SGW5	SUPPRESSOR OF GW5	WD40 protein 45, suppressor of gw5	WD40 PROTEIN 45		2		 Seed - Morphological traits - Grain shape	Os02g0543400	LOC_Os02g33860.1					TO:0000975 - grain width	
10727	_	OsWD40-46, OsDWD27, DWD27	_	DWD motif- containing protein 27			2			Os02g0591600	LOC_Os02g37856.1						
10728	_	OsWD40-47	_				2	CT832990.		Os02g0638900	LOC_Os02g42590.1, LOC_Os02g42590.2, LOC_Os02g42590.3						
10729	_	OsWD40-48, OsSTA70	_				2	LOC_Os02g44380. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0663300	LOC_Os02g44380.2						PO:0009066 - anther 
10731	TTG1A	OsWD40-50, WD40-50, OsTTG1A, OsTTG1, TTG1	TRANSPARENT TESTA GLABRA 1A	WD40 protein 50, TRANSPARENT TESTA GLABRA1A, TRANSPARENT TESTA GLABRA1	WD40 PROTEIN 50	osttg1	2	Q0DYP5. a homologue of Arabidopsis transcription factor TTG1. the syntenic orthologs of TRANSPARENT TESTA GLABRA 1 (AtTTG1, At5G24520) in Arabidopsis thaliana and pale aleurone color1 (pac1, GRMZM2G058292) in maize.  TO:0001109: grain color trait.	 Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Seed - Morphological traits	Os02g0682500	LOC_Os02g45810.2, LOC_Os02g45810.1				GO:0010026 - trichome differentiation, GO:0009642 - response to light intensity, GO:0009957 - epidermal cell fate specification, GO:0032880 - regulation of protein localization, GO:0009408 - response to heat, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0045165 - cell fate commitment, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0006612 - protein targeting to membrane, GO:0005737 - cytoplasm, GO:0003677 - DNA binding, GO:0010363 - regulation of plant-type hypersensitive response, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000197 - ligule color, TO:0000071 - anthocyanin content, TO:0000065 - root color, TO:0000364 - leaf collar color, TO:0002724 - leaf sheath color, TO:0000707 - pericarp color, TO:0000056 - stem color, TO:0000201 - panicle color, TO:0000326 - leaf color, TO:0000486 - seed color, TO:0000140 - apiculus color, TO:0000460 - light intensity sensitivity, TO:0000259 - heat tolerance	PO:0007010 - whole plant fruit ripening stage , PO:0001170 - seed development stage , PO:0007632 - seed maturation stage , PO:0020103 - flag leaf , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0006012 - leaf collar , PO:0009047 - stem , PO:0009010 - seed 
10732	CDC20.1	OsWD40-51, OsCDC20.1, WD40-51, CDC20.1, CDC20.2, OsCDC20.2, OsCDC20-3, CDC20-3, OsCDC20A, CDC20A	CELL DIVISION CYCLE PROTEIN 20.1	cell division cycle protein 20.1, Cell Division Cycle 20.2, APC-type E3 ubiquitin ligase OsCDC20-3	CELL DIVISION CYCLE PROTEIN 20.1		2	CT830874. WD repeat-containing protein. a putative meiosis-related gene. CDC20.2 in Lin et al. 2022. GO:1990757: ubiquitin ligase activator activity. GO:1905786: positive regulation of anaphase-promoting complex-dependent catabolic process. GO:0097027: ubiquitin-protein transferase activator activity. GO:1904668: positive regulation of ubiquitin protein ligase activity.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0700100	LOC_Os02g47180.1, LOC_Os02g47180.2				GO:0005680 - anaphase-promoting complex, GO:0045132 - meiotic chromosome segregation, GO:0000910 - cytokinesis, GO:0007126 - meiosis, GO:0000278 - mitotic cell cycle, GO:0010997 - anaphase-promoting complex binding, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	TO:0000437 - male sterility, TO:0000421 - pollen fertility, TO:0000729 - meiotic cell cycle trait, TO:0000730 - mitotic cell cycle trait	PO:0020003 - plant ovule , PO:0009066 - anther 
10734	_	OsWD40-53, OsDWD23, DWD23	_	DWD motif- containing protein 23			2			Os02g0722800	LOC_Os02g49090.1, LOC_Os02g49090.2				GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA, GO:0009965 - leaf morphogenesis, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0000932 - cytoplasmic mRNA processing body		
10735	_	OsWD40-54	_				2			Os02g0740900	LOC_Os02g50740.1						
10738	_	OsWD40-57, OsDWD65, DWD65	_	DWD motif- containing protein 65			2			Os02g0796700	LOC_Os02g55340.1						
10739	WD40-58	OsWD40-58	WD-REPEAT PROTEIN 40-58	WD-repeat protein 40-58	WD-REPEAT PROTEIN 40-58		2			Os02g0813800	LOC_Os02g56880.1				GO:0009908 - flower development, GO:0009790 - embryonic development		
10740	_	OsWD40-59	_				2			Os02g0817200	LOC_Os02g57220.1				GO:0030833 - regulation of actin filament polymerization, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005856 - cytoskeleton		
10741	_	OsWD40-60, OsDWD69, DWD69	_	DWD motif- containing protein 69			3			Os03g0115400	LOC_Os03g02440.1, LOC_Os03g02440.2						
10743	_	OsWD40-62	_				3			Os03g0145600	LOC_Os03g05210.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
10744	_	OsWD40-63	_				3			Os03g0151700	LOC_Os03g05720.1				GO:0005730 - nucleolus		
10745	_	OsWD40-64, OsDWD49, DWD49	_	DWD motif- containing protein 49			3			Os03g0187300	LOC_Os03g08830.1				GO:0005886 - plasma membrane		
10746	_	OsWD40-65	_				3			Os03g0207900	LOC_Os03g10990.1						
10747	WD40-66	OsWD40-66, TPR3, OsTPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2, OsTPL, TPL	WD40 PROTEIN 66	TOPLESS-RELATED PROTEIN 3, TOPLESS 2, topless-related 1, TOPLESS	WD40 PROTEIN 66		3	TPR1 in Wang et al. 2015. OsTPL in Feng et al. 2020.	 Other	Os03g0254700	LOC_Os03g14980.2, LOC_Os03g14980.1				GO:0010072 - primary shoot apical meristem specification, GO:0006338 - chromatin remodeling, GO:0003714 - transcription corepressor activity, GO:0010051 - xylem and phloem pattern formation, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009733 - response to auxin stimulus, GO:0009867 - jasmonic acid mediated signaling pathway		
10748	_	OsWD40-67	_				3			Os03g0286800	LOC_Os03g17780.1				GO:0080008 - CUL4 RING ubiquitin ligase complex		
10749	_	OsWD40-68	_				3			Os03g0300300	LOC_Os03g18840.1						
10750	WD40-69	OsWD40-69, OsBrd6, Brd6	WD-REPEAT PROTEIN 40-69	WD40 protein 69, bromodomain-containing protein 6	WD-REPEAT PROTEIN 40-69		3	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os03g0306200	LOC_Os03g19340.1				GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009010 - seed 
10751	_	OsWD40-70, OsDWD2, DWD2	_	DWD motif- containing protein 2			3			Os03g0339100	LOC_Os03g21990.1				GO:0048366 - leaf development, GO:0009749 - response to glucose stimulus, GO:0048825 - cotyledon development, GO:0009870 - defense response signaling pathway, resistance gene-dependent, GO:0009755 - hormone-mediated signaling, GO:0010204 - defense response signaling pathway, resistance gene-independent, GO:0048364 - root development, GO:0010182 - sugar mediated signaling, GO:0042742 - defense response to bacterium, GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0005634 - nucleus, GO:0006508 - proteolysis		
10752	_	OsWD40-71	_				3			Os03g0355300	LOC_Os03g23920.1						
10753	_	OsWD40-72	_				3			Os03g0355200	LOC_Os03g23935.1				GO:0001709 - cell fate determination, GO:0009560 - embryo sac egg cell differentiation, GO:0016607 - nuclear speck		
10755	_	OsWD40-74, OsDWD39, DWD39	_	DWD motif- containing protein 39			3			Os03g0397500	LOC_Os03g27970.1						
10756	_	OsWD40-75	_				3				LOC_Os03g32020.1						
10757	_	OsWD40-76, OsDWD66, DWD66	_	DWD motif- containing protein 66			3			Os03g0448600	LOC_Os03g33580.1, LOC_Os03g33580.2				GO:0007094 - mitotic cell cycle spindle assembly checkpoint, GO:0000776 - kinetochore, GO:0009524 - phragmoplast		
10758	WD40-77	OsWD40-77	WD-REPEAT PROTEIN 40-77	WD-repeat protein 40-77	WD-REPEAT PROTEIN 40-77		3			Os03g0625300	LOC_Os03g42710.1						
10759	_	OsWD40-78, OsDWD73, DWD73	_	DWD motif- containing protein 73			3			Os03g0625900	LOC_Os03g42770.1				GO:0060321 - acceptance of pollen, GO:0005730 - nucleolus, GO:0003676 - nucleic acid binding, GO:0030529 - ribonucleoprotein complex, GO:0009553 - embryo sac development, GO:0009793 - embryonic development ending in seed dormancy		
10760	MSI1	OsWD40-79, OsMSI1, WD40-79, OsDWD1, DWD1	MULTICOPY SUPPRESSORS OF THE IRAL 1	Multicopy suppressors of the iral 1, DWD motif- containing protein 1	MULTICOPY SUPPRESSORS OF THE IRAL 1		3	CT829253. Q10G81. a rice polycomb group (PcG) protein. a homolog of Arabidopsis PRC2. rice homolog of AtMSI1. a core polycomb repressive complex 2 (PRC2) component. GO:0061458: reproductive system development. PO:0030123: panicle inflorescence. GO:0061085: regulation of histone H3-K27 methylation. 	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0640100	LOC_Os03g43890.1				GO:0010026 - trichome differentiation, GO:0010214 - seed coat development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006349 - genetic imprinting, GO:0009909 - regulation of flower development, GO:0070734 - histone H3-K27 methylation, GO:0031507 - heterochromatin formation, GO:0008283 - cell proliferation, GO:0006281 - DNA repair, GO:0045787 - positive regulation of cell cycle, GO:0009555 - pollen development, GO:0048366 - leaf development, GO:0006310 - DNA recombination, GO:0006351 - transcription, DNA-dependent, GO:0009507 - chloroplast, GO:0009793 - embryonic development ending in seed dormancy, GO:0016585 - chromatin remodeling complex		PO:0000003 - whole plant , PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0009049 - inflorescence 
10761	RGB1	OsWD40-80, RGbeta1, OsRGB1, OsDWD38, DWD38	RICE G PROTEIN BETA SUBUNIT 1	heterotrimeric G protein beta 1 subunit, heterotrimeric G protein b-subunit 1, G protein beta subunit 1, DWD motif- containing protein 38	RICE G PROTEIN BETA SUBUNIT 1	rgb1, rgb1-1, rgb1-2, rgb1-3	3	Q40687. X89737. Gene Expression Omnibus ID: GSE169377. TO:0000949: seedling growth and development trait. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape	Os03g0669200	LOC_Os03g46650.1				GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0004871 - signal transducer activity, GO:0009790 - embryonic development, GO:0010252 - auxin homeostasis, GO:0010581 - regulation of starch biosynthetic process, GO:0005985 - sucrose metabolic process, GO:0048367 - shoot development, GO:0048527 - lateral root development, GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0008219 - cell death, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0010600 - regulation of auxin biosynthetic process, GO:0009887 - organ morphogenesis, GO:0009723 - response to ethylene stimulus, GO:0048364 - root development, GO:0010431 - seed maturation, GO:0009817 - defense response to fungus, incompatible interaction, GO:0048316 - seed development, GO:0010154 - fruit development, GO:0009845 - seed germination, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum	TO:0000430 - germination rate, TO:0000207 - plant height, TO:0000391 - seed size, TO:0000620 - embryo development trait, TO:0000639 - seed fertility, TO:0000397 - grain size, TO:0000152 - panicle number, TO:0000137 - days to heading, TO:0000590 - grain weight, TO:0000696 - starch content, TO:0000656 - root development trait, TO:0002672 - auxin content, TO:0000064 - embryo related trait, TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000303 - cold tolerance	PO:0007131 - seedling development stage , PO:0025527 - shoot system development stage , PO:0007632 - seed maturation stage , PO:0001170 - seed development stage , PO:0007631 - plant embryo stage , PO:0007520 - root development stage 
10762	_	OsWD40-81, OsLST8, LST8, OsDWD26, DWD26	_	DWD motif- containing protein 26			3	CT832450.		Os03g0681700	LOC_Os03g47780.1, LOC_Os03g47780.2				GO:0031931 - TORC1 complex, GO:0031932 - TORC2 complex, GO:0031929 - TOR signaling pathway, GO:0032956 - regulation of actin cytoskeleton organization		
10763	_	OsWD40-82, OsDWD19, DWD19	_	DWD motif- containing protein 19			3			Os03g0685600	LOC_Os03g48090.1						
10764	_	OsWD40-83, WD40-83, OsCDT2, CDT2, OsDWD58, DWD58	_	DWD motif- containing protein 58			3			Os03g0699100	LOC_Os03g49200.2, LOC_Os03g49200.1						
10765	_	OsWD40-84	_				3	Q9AUR8.		Os03g0711400	LOC_Os03g50340.1				GO:0005886 - plasma membrane, GO:0030126 - COPI vesicle coat, GO:0005198 - structural molecule activity, GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport		
10766	_	OsWD40-85	_				3	Q9AUR7.		Os03g0711500	LOC_Os03g50350.1				GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0030126 - COPI vesicle coat, GO:0005198 - structural molecule activity, GO:0016192 - vesicle-mediated transport		
10767	_	OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5, OsDWD41, DWD41	_	WD repeat domain 5, DWD motif- containing protein 41			3	LOC_Os03g51550. a WD40 protein related to Arabidopsis WDR5. Rice, a model SD plant, contains two major flowering pathways: a conserved photoperiod pathway and a unique photoperiod-independent flowering-time pathway. OsWDR5a might not be involved in the photoperiod pathway (Jiang et al. 2018). chromatin-modifying complex. histone modification protein.	 Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os03g0725400	LOC_Os03g51550.1, LOC_Os03g51550.2, LOC_Os03g51550.3				GO:0005634 - nucleus, GO:0051568 - histone H3-K4 methylation, GO:0042393 - histone binding, GO:0010228 - vegetative to reproductive phase transition, GO:0048188 - Set1C/COMPASS complex, GO:0010229 - inflorescence development, GO:0009790 - embryonic development	TO:0002759 - grain number, TO:0000137 - days to heading, TO:0006032 - panicle size, TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
10768	_	OsWD40-87	_				3			Os03g0735100	LOC_Os03g52470.1						
10769	_	OsWD40-88	_				3			Os03g0738000	LOC_Os03g52794.1						
10770	GORI	OsWD40-89, WD40-89, OsGORI, OsABT, ABT	GERMINATING MODULATOR OF RICE POLLEN	Germinating modulator of rice pollen, ABA signaling terminator	GERMINATING MODULATOR OF RICE POLLEN	gori, gori-2	3		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os03g0738700	LOC_Os03g52870.1				GO:0005829 - cytosol, GO:0009846 - pollen germination, GO:0009860 - pollen tube growth, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0042545 - cell wall modification, GO:0048268 - clathrin coat assembly, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0055075 - potassium ion homeostasis, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0046345 - abscisic acid catabolic process	TO:0000434 - root activity, TO:0000609 - potassium content, TO:0000525 - sodium to potassium content ratio, TO:0000605 - hydrogen peroxide content, TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000437 - male sterility, TO:0000608 - sodium content	PO:0025281 - pollen 
10771	_	OsWD40-90, WD40-90	_				3			Os03g0744650/Os03g0744675	LOC_Os03g53280.1						
10772	_	OsWD40-91, OsDWD24, DWD24	_	DWD motif- containing protein 24			3	CT832664.		Os03g0746600	LOC_Os03g53510.2						
10773	_	OsWD40-92	_				3			Os03g0746800	LOC_Os03g53530.1						
10774	_	OsWD40-93	_				3			Os03g0754900	LOC_Os03g54770.1, LOC_Os03g54770.2, LOC_Os03g54770.3						
10776	_	OsWD40-95	_				3			Os03g0831800	LOC_Os03g61630.1, LOC_Os03g61630.2				GO:0005730 - nucleolus		
10777	_	OsWD40-96	_				3			Os03g0851600	LOC_Os03g63470.1						
10778	_	OsWD40-97	_				3	AU162272, AU029581.	 Tolerance and resistance - Stress tolerance	Os03g0858400	LOC_Os03g64110.1					TO:0000432 - temperature response trait	
10779	_	OsWD40-98	_				3			Os03g0861000	LOC_Os03g64310.1						
10780	_	OsWD40-99	_				4			Os04g0195000	LOC_Os04g11880.1, LOC_Os04g11880.2, LOC_Os04g11880.3				GO:0008270 - zinc ion binding, GO:0009630 - gravitropism, GO:0016192 - vesicle-mediated transport, GO:0006886 - intracellular protein transport		
10781	_	OsWD40-100	_				4			Os04g0417800	LOC_Os04g34080.1						
10782	_	OsWD40-101	_				4			Os04g0481600	LOC_Os04g40560.1						
10783	_	OsWD40-102, OsDWD33, DWD33	_	DWD motif- containing protein 33			4			Os04g0507900	LOC_Os04g42880.1						
10784	_	OsWD40-103	_				4								GO:0003697 - single-stranded DNA binding, GO:0009908 - flower development, GO:0009790 - embryonic development		
10785	_	OsWD40-104	_				4			Os04g0529400	LOC_Os04g44700.1, LOC_Os04g44700.2						
10786	_	OsWD40-105	_				4			Os04g0555400							
10787	KRN2	OsWD40-106, WD40-106, OsKRN2	KERNEL ROW NUMBER 2	kernel row number2		oskrn2-1, oskrn2-2	4	BGIOSGA016939  in indica. accession number in NCBI: PRJNA771523 (WGS of CRISPR knockouts for DUF1644, KRN2 and OsKRN2).	 Character as QTL - Yield and productivity	Os04g0568400	LOC_Os04g48010.1, LOC_Os04g48010.2					TO:0000396 - grain yield, TO:0002759 - grain number	
10788	_	OsWD40-107	_				4			Os04g0572700	LOC_Os04g48375.1						
10789	_	OsWD40-108, OsDWD61, DWD61	_	DWD motif- containing protein 61			4			Os04g0592700	LOC_Os04g50660.1				GO:0009793 - embryonic development ending in seed dormancy, GO:0006364 - rRNA processing, GO:0032040 - small-subunit processome, GO:0005730 - nucleolus, GO:0051301 - cell division, GO:0009880 - embryonic pattern specification		
10790	WD40-109	OsWD40-109, OsCDC20, CDC20, CDC20.1, OsCDC20.1, OsCDC20-2, CDC20-2, OsCDC20B, CDC20B	WD-40 REPEAT DOMAIN-CONTAINING PROTEIN 109	Cell Division Cycle 20.1, APC-type E3 ubiquitin ligase OsCDC20-2	WD-40 REPEAT DOMAIN-CONTAINING PROTEIN 109		4	CT834267, CT834269, CT834268, CT834266. GO:0097027: ubiquitin-protein transferase activator activity. GO:1904668: positive regulation of ubiquitin protein ligase activity. GO:1905786: positive regulation of anaphase-promoting complex-dependent catabolic process.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0599800	LOC_Os04g51110.1, LOC_Os04g51110.2				GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0045132 - meiotic chromosome segregation, GO:0005680 - anaphase-promoting complex, GO:0007126 - meiosis, GO:0000910 - cytokinesis, GO:0010997 - anaphase-promoting complex binding, GO:0000278 - mitotic cell cycle	TO:0000421 - pollen fertility, TO:0000730 - mitotic cell cycle trait, TO:0000437 - male sterility, TO:0000729 - meiotic cell cycle trait	PO:0009066 - anther , PO:0020003 - plant ovule 
10791	_	OsWD40-110, OsFbox233, Os_F0069, OsFBW1, FBW1	_	F-box protein 233, F-box-type E3 ubiquitin ligase W1			4	LOC_Os04g52870. Os_F0069 in Hua et al. 2011.		Os04g0619700	LOC_Os04g52870.1				GO:0016036 - cellular response to phosphate starvation		
10792	_	OsWD40-111, OsDWD43, DWD43	_	DWD motif- containing protein 43			4			Os04g0677650	LOC_Os04g58130.1				GO:0016036 - cellular response to phosphate starvation		
10793	_	OsWD40-112	_				4			Os04g0678300	LOC_Os04g58180.1						
10794	_	OsWD40-113, OsDWD34, DWD34	_	DWD motif- containing protein 34			5	CT832718.		Os05g0144100	LOC_Os05g05210.1, LOC_Os05g05210.2						
10796	_	OsWD40-115	_				5			Os05g0240200	LOC_Os05g15040.1, LOC_Os05g15040.2, LOC_Os05g15040.3, LOC_Os05g15040.4				GO:0006952 - defense response, GO:0043531 - ADP binding		
10797	_	OsWD40-116, OseIF3i, eIF3i, EIF3I, OsDWD52, DWD52	_	"EUKARYOTIC INITIATION FACTOR 3I, \"eukaryotic translation initiation factor 3, subunit i\", DWD motif- containing protein 52"			5	CT829116. LOC_Os05g16660.	 Other,  Tolerance and resistance - Stress tolerance	Os05g0256000	LOC_Os05g16660.1, LOC_Os05g16660.2, LOC_Os05g16660.3				GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0003743 - translation initiation factor activity, GO:0006446 - regulation of translational initiation, GO:0001731 - formation of translation preinitiation complex, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex		
10798	_	OsWD40-117	_				5			Os05g0299300	LOC_Os05g23430.2						
10800	_	OsWD40-119, OsDWD17, DWD17	_	DWD motif- containing protein 17			5	CT829855, CT829853, CT829854.		Os05g0407200	LOC_Os05g33710.1						
10801	_	OsWD40-120	_				5	CT832035.		Os05g0519500	LOC_Os05g44320.1, LOC_Os05g44320.2, LOC_Os05g44320.3						
10802	_	OsWD40-121, OsDWD15, DWD15	_	DWD motif- containing protein 15			5			Os05g0543300	LOC_Os05g46570.1						
10803	RACK1B	OsWD40-122, WD40-122, OsRACK1B	RECEPTOR FOR ACTIVATED C KINASE 1B	G-protein beta-subunit-like polypeptide, receptor for activated C kinase 1B	RECEPTOR FOR ACTIVATED C KINASE 1B		5	CT833917. Q6L4F8. D29704. GO:0071588: hydrogen peroxide mediated signaling pathway. GO:0160030: pollen intine formation. GO:1900055: regulation of leaf senescence. GO:1903647: negative regulation of chlorophyll catabolic process.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0552300	LOC_Os05g47890.1				GO:0048653 - anther development, GO:0046686 - response to cadmium ion, GO:0048364 - root development, GO:0022626 - cytosolic ribosome, GO:0048367 - shoot development, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence, GO:0010271 - regulation of chlorophyll catabolic process, GO:0009555 - pollen development, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0010229 - inflorescence development, GO:0009901 - anther dehiscence, GO:0010584 - pollen exine formation, GO:0005730 - nucleolus, GO:0004871 - signal transducer activity, GO:0010208 - pollen wall assembly	TO:0000605 - hydrogen peroxide content, TO:0000421 - pollen fertility, TO:0000474 - glume opening, TO:0000436 - spikelet sterility, TO:0000214 - anther shape, TO:0000657 - spikelet anatomy and morphology trait, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000249 - leaf senescence, TO:0001016 - relative chlorophyll content, TO:0002664 - leaf yellowing tolerance	PO:0001054 - 4 leaf senescence stage , PO:0001035 - G anther dehiscence stage , PO:0001083 - inflorescence development stage , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
10804	_	OsWD40-123, OsSPA1, OsDWD76, DWD76	_	SPA1-like, DWD motif- containing protein 76			5	LOC_Os05g49590. one of rice SPA orthologs.		Os05g0571000	LOC_Os05g49590.1, LOC_Os05g49590.2				GO:0016772 - transferase activity, transferring phosphorus-containing groups		
10805	_	OsWD40-124	_				6			Os06g0131100	LOC_Os06g04040.1, LOC_Os06g04040.2, LOC_Os06g04040.3				GO:0048700 - acquisition of desiccation tolerance, GO:0009790 - embryonic development		
10806	_	OsWD40-125	_	beta prime COP coatomer protein			6	Q5VQ78. C26456, AU164984.	 Tolerance and resistance - Stress tolerance	Os06g0143900	LOC_Os06g05180.3, LOC_Os06g05180.4				GO:0016192 - vesicle-mediated transport, GO:0006886 - intracellular protein transport, GO:0005198 - structural molecule activity, GO:0030663 - COPI coated vesicle membrane, GO:0030117 - membrane coat	TO:0000432 - temperature response trait	
10808	_	OsWD40-127	_				6			Os06g0238700	LOC_Os06g13140.1						
10809	WD40-128	OsWD40-128, OsDWD18, DWD18, OsEDC4, EDC4	WD40 PROTEIN 128	DWD motif- containing protein 18, enhancer of mRNA decapping protein 4	WD40 PROTEIN 128		6		 Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity	Os06g0300800	LOC_Os06g19660.1, LOC_Os06g19660.2				GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0000932 - cytoplasmic mRNA processing body, GO:0050832 - defense response to fungus, GO:0009965 - leaf morphogenesis, GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA	TO:0000074 - blast disease, TO:0000357 - growth and development trait	
10810	_	OsWD40-129	_				6			Os06g0502600	LOC_Os06g30680.1						
10811	_	OsWD40-130	_				6			Os06g0598900	LOC_Os06g39760.1						
10812	_	OsWD40-131	_				6			Os06g0644600	LOC_Os06g43690.1						
10813	_	OsWD40-132	_				6			Os06g0649500	LOC_Os06g44030.1, LOC_Os06g44030.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
10814	_	OsWD40-133, OsDWD71, DWD71	_	DWD motif- containing protein 71			6			Os06g0653800	LOC_Os06g44370.1						
10815	_	OsWD40-134	_				6			Os06g0678650	LOC_Os06g46475.1				GO:0005739 - mitochondrion		
10816	_	OsWD40-135, OsDWD48, DWD48	_	DWD motif- containing protein 48			6			Os06g0724500	LOC_Os06g50880.1						
10817	_	OsWD40-136	_				7	LOC_Os07g03160.		Os07g0123700	LOC_Os07g03160.1						
10819	SERL7	OsWD40-138, OsSERL7, OsDWD29, DWD29	SERK-LIKE GENE 7	SERK-like gene 7, DWD motif- containing protein 29	SERK-LIKE PROTEIN 7		7			Os07g0224900	LOC_Os07g12320.1				GO:0006364 - rRNA processing, GO:0005730 - nucleolus		
10820	_	OsWD40-139	_				7			Os07g0246300	LOC_Os07g14280.1				GO:0005730 - nucleolus		
10821	_	OsWD40-140, OsDWD37, DWD37	_	DWD motif- containing protein 37			7			Os07g0252000	LOC_Os07g14830.1						
10822	_	OsWD40-141, OsDWD40, DWD40	_	DWD motif- containing protein 40			7			Os07g0405100	LOC_Os07g22220.1						
10823	_	OsWD40-142, OsDWD11, DWD11	_	DWD motif- containing protein 11			7			Os07g0408100	LOC_Os07g22534.1, LOC_Os07g22534.2, LOC_Os07g22534.3, LOC_Os07g22534.4						
10824	_	OsWD40-143	_				7			Os07g0435400	LOC_Os07g25440.1, LOC_Os07g25440.2				GO:0005634 - nucleus, GO:0051726 - regulation of cell cycle, GO:0006364 - rRNA processing		
10825	_	OsWD40-144, WD40-144, OsWDR5b, WDR5b, OsDWD28, DWD28	_	DWD motif- containing protein 28			7	LOC_Os07g38430. a WD40 protein related to Arabidopsis WDR5. 		Os07g0572000	LOC_Os07g38430.1						
10826	_	OsWD40-145	_				7			Os07g0588500	LOC_Os07g39950.1				GO:0009524 - phragmoplast, GO:0000776 - kinetochore, GO:0007094 - mitotic cell cycle spindle assembly checkpoint		
10827	_	OsWD40-146, OsDWD14, DWD14	_	DWD motif- containing protein 14			7	CT832145.		Os07g0589400	LOC_Os07g40030.1, LOC_Os07g40030.2, LOC_Os07g40030.3						
10828	_	OsWD40-147, OsDWD44, DWD44	_	DWD motif- containing protein 44			7	CT831874.		Os07g0600400	LOC_Os07g40930.1				GO:0005730 - nucleolus, GO:0042254 - ribosome biogenesis		
10829	_	OsWD40-148	_				7	AB042102.		Os07g0657200	LOC_Os07g46370.1				GO:0016020 - membrane		
10830	_	OsWD40-149, OsDWD30, DWD30	_	DWD motif- containing protein 30			7			Os07g0660700	LOC_Os07g46620.1						
10831	_	OsWD40-150	_				7	LOC_Os07g47410.			LOC_Os07g47410						
10832	_	OsWD40-151	_				7	LOC_Os07g49090.			LOC_Os07g49090						
10833	_	OsWD40-152	_				8			Os08g0108300	LOC_Os08g01690.1						
10837	WD40-156	OsWD40-156	WD40 PROTEIN 156		WD40 PROTEIN 156		8	similar to mRNA-associated protein mrnp 41. One of three hub genes in DEGs identified among AG (Anaerobic germination) stress, cold stress and conbined AG and cold stresses (Thapa et al. 2023).	 Tolerance and resistance - Stress tolerance	Os08g0176800	LOC_Os08g07960.1, LOC_Os08g07960.2				GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0009409 - response to cold, GO:0034059 - response to anoxia, GO:0001666 - response to hypoxia, GO:0009413 - response to flooding	TO:0000114 - flooding related trait, TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance	
10838	_	OsWD40-157	_				8			Os08g0282500	LOC_Os08g18150.1						
10839	_	OsWD40-158	_				8			Os08g0285200	LOC_Os08g18880.1						
10840	_	OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I, OsDWD53, DWD53	_	"EUKARYOTIC INITIATION FACTOR 3I, \"eukaryotic translation initiation factor 3, subunit i\", DWD motif- containing protein 53"			8	CT833823. a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21660.	 Other,  Tolerance and resistance - Stress tolerance	Os08g0308100	LOC_Os08g21660.1, LOC_Os08g21660.2				GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0009651 - response to salt stress, GO:0001731 - formation of translation preinitiation complex, GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0003743 - translation initiation factor activity, GO:0046686 - response to cadmium ion, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex		
10842	EHD5	OsWD40-161, WD40-161, Ehd5, OsEhd5	EARLY HEADING DATE 5	Early heading date 5	WD-REPEAT PROTEIN 40-161	ehd5	8	PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Character as QTL - Yield and productivity	Os08g0493900	LOC_Os08g38570.1				GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0009416 - response to light stimulus, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0048573 - photoperiodism, flowering	TO:0000152 - panicle number, TO:0000137 - days to heading, TO:0000449 - grain yield per plant, TO:0002616 - flowering time, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000040 - panicle length, TO:0000547 - primary branch number, TO:0000075 - light sensitivity, TO:0000371 - yield trait	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0025477 - floral organ primordium 
10844	_	OsWD40-163	_				8			Os08g0531200	LOC_Os08g41900.1						
10846	_	OsWD40-165	_				9	Q0J3D9.		Os09g0127800	LOC_Os09g04110.1, LOC_Os09g04110.2				GO:0030126 - COPI vesicle coat, GO:0005198 - structural molecule activity, GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport, GO:0005886 - plasma membrane		
10847	DRW1	OsWD40-166, WD40-166, OsDRW1, OsDWD47, DWD47	DWARF-RELATED WD40 PROTEIN 1 	dwarf-related wd40 protein 1, DWD motif- containing protein 47	DWARF-RELATED WD40 PROTEIN 1 	drw1	9	Rice homolog of yeast CTF4 (CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4). rice homolog of Arabidopsis EOL1.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity	Os09g0241100	LOC_Os09g06560.1				GO:0070734 - histone H3-K27 methylation, GO:0005634 - nucleus, GO:0010564 - regulation of cell cycle process, GO:0045740 - positive regulation of DNA replication, GO:0006974 - response to DNA damage stimulus, GO:0045787 - positive regulation of cell cycle	TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000592 - 1000-dehulled grain weight, TO:0000145 - internode length, TO:0000455 - seed set percent, TO:0000135 - leaf length	PO:0005052 - plant callus , PO:0025034 - leaf , PO:0006085 - root meristem , PO:0020148 - shoot apical meristem 
10848	WD40-167	OsWD40-167, CDC20.3, OsCDC20.3, OsCDC20-1, CDC20-1	WD-40 REPEAT DOMAIN-CONTAINING PROTEIN 167	Cell Division Cycle 20.3, APC-type E3 ubiquitin ligase OsCDC20-1	WD-40 REPEAT DOMAIN-CONTAINING PROTEIN 167		9	GO:0097027: ubiquitin-protein transferase activator activity. GO:1904668: positive regulation of ubiquitin protein ligase activity. GO:1990757: ubiquitin ligase activator activity. GO:1905786: positive regulation of anaphase-promoting complex-dependent catabolic process.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0242300	LOC_Os09g06680.1				GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0005680 - anaphase-promoting complex, GO:0010997 - anaphase-promoting complex binding, GO:0045132 - meiotic chromosome segregation, GO:0000910 - cytokinesis, GO:0007126 - meiosis	TO:0000437 - male sterility, TO:0000421 - pollen fertility	
10849	_	OsWD40-168	_				9			Os09g0267500	LOC_Os09g09470.1, LOC_Os09g09470.2				GO:0005828 - kinetochore microtubule, GO:0060236 - regulation of mitotic spindle organization, GO:0009553 - embryo sac development, GO:0009555 - pollen development, GO:0032467 - positive regulation of cytokinesis, GO:0000919 - cell plate formation		
10850	WD40-169	OsWD40-169, OsDWD59, DWD59, HSLG2, OsHSLG2	WD40 PROTEIN 169	WD40 protein 169, DWD motif- containing protein 59, Homologue of SLG2	WD40 protein 169, DWD motif- containing protein 59, Homologue of SLG2	hslg2	9	PO:0030123: panicle inflorescence. 		Os09g0296900	LOC_Os09g12550.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0006914 - autophagy		PO:0009082 - spikelet floret , PO:0009047 - stem , PO:0009005 - root , PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
10851	_	OsWD40-170, OsDWD16, DWD16	_	DWD motif- containing protein 16			9			Os09g0298400	LOC_Os09g12710.1				GO:0010267 - production of ta-siRNAs involved in RNA interference		
10852	WD40-171	OsWD40-171, OsDWD63, DWD63, OsDWD1, DWD1	WD-REPEAT PROTEIN 40-171	WD-repeat protein 40-171, DWD motif- containing protein 63, DDB1 binding WD 1	WD-REPEAT PROTEIN 40-171		9		 Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance	Os09g0363600	LOC_Os09g19900.1				GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response	TO:0000207 - plant height, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance	
10853	_	OsWD40-172	_				9			Os09g0477800	LOC_Os09g30090.1						
10854	_	OsWD40-173, WD40-173, OsMed4_1, Med4_1, OsDWD4, DWD4	_	Mediator 4_1, DWD motif- containing protein 4			9	LOC_Os09g36900.		Os09g0540600	LOC_Os09g36900.1				GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0005634 - nucleus		
10855	_	OsWD40-174, WD40-174	_				9	Q652L2. an osa-miR167d-5p target gene.	 Tolerance and resistance - Disease resistance	Os09g0567700	LOC_Os09g39420.1				GO:0006351 - transcription, DNA-dependent, GO:0016568 - chromatin modification, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000175 - bacterial blight disease resistance	
10856	_	OsWD40-175, OsDWD20, DWD20	_	DWD motif- containing protein 20			10			Os10g0104500	LOC_Os10g01540.1, LOC_Os10g01540.2						
10857	_	OsWD40-176, OsDWD25, DWD25	_	DWD motif- containing protein 25			10	CT829300.		Os10g0464100	LOC_Os10g32710.1, LOC_Os10g32710.2, LOC_Os10g32710.3						
10858	_	OsWD40-177	_				10			Os10g0465000	LOC_Os10g32770.1, LOC_Os10g32770.2, LOC_Os10g32770.3						
10859	PUB72	OsWD40-178, OsPUB72, OsDWD6, DWD6, OsPUB72, PUB72	PLANT U-BOX-CONTAINING PROTEIN 72	plant U-box-containing protein 72, U-box protein 72, DWD motif- containing protein 6, U-box-type E3 ubiquitin ligase 72	PLANT U-BOX-CONTAINING PROTEIN 72		10	Q9AV81. class VI PUB protein (U-box + WD40). EST: CB64800, CB64800, CB65460, CB65461, C28936, CB64479, CB64479, CB64050, CB63621, CB63622, CB63994, CB64625, CB64625, CB630643, CB630644, CB633728, CB633729, CA753148, CB684534, CB684533, CB684504, AU063371, AU063355, AU101014, CR288259, AU068591, BI81131, CR288238, AU166674, AU222544, BQ908380, AU092951, CF308939, CF308938.		Os10g0466300	LOC_Os10g32880.1				GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0046686 - response to cadmium ion, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0009507 - chloroplast		
10860	_	OsWD40-179, OsKTN80a, OsDWD9, DWD9	_	katanin P80a, Katanin regulatory subunit P80a, DWD motif- containing protein 9			10	a katanin P80 ortholog. a microtubule-severing enzyme.	 Vegetative organ - Root	Os10g0494800	LOC_Os10g35200.1				GO:0051013 - microtubule severing, GO:0008352 - katanin complex	TO:0000227 - root length	
10861	_	OsWD40-180	_				10			Os10g0544500	LOC_Os10g39760.1						
10862	_	OsWD40-181	_				11	CT830828.		Os11g0132600	LOC_Os11g03780.1, LOC_Os11g03780.2				GO:0045493 - xylan catabolic process, GO:0048046 - apoplast, GO:0009505 - plant-type cell wall, GO:0005773 - vacuole, GO:0009044 - xylan 1,4-beta-xylosidase activity, GO:0046556 - alpha-N-arabinofuranosidase activity, GO:0046373 - L-arabinose metabolic process		
10863	_	OsWD40-182, OsDWD45, DWD45	_	DWD motif- containing protein 45			11	DQ491004.		Os11g0134500	LOC_Os11g03990.1						
10864	_	OsWD40-183, OsSTA251	_				11	LOC_Os11g07480. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0176000	LOC_Os11g07480.1						PO:0009066 - anther 
10865	_	OsWD40-184, OsFbox571, Os_F0380, OsFBW2, FBW2	_	F-box protein 571, F-box-type E3 ubiquitin ligase W2			11	LOC_Os11g07970. Os_F0380 in Hua et al. 2011.		Os11g0182400	LOC_Os11g07970.1						
10866	_	OsWD40-185, OsSTA253	_				11	LOC_Os11g08400. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0187100	LOC_Os11g08400.1						PO:0009066 - anther 
10867	RLCK316	OsWD40-186, OsRLCK316, OsDWD70, DWD70	RECEPTOR-LIKE CYTOPLASMIC KINASE 316	Receptor-like Cytoplasmic Kinase 316, DWD motif- containing protein 70	RECEPTOR-LIKE CYTOPLASMIC KINASE 316		11	LOC_Os11g10640.		Os11g0212300	LOC_Os11g10640.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
10868	_	OsWD40-187	_				11			Os11g0212900					GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
10869	RLCK318	OsWD40-188, OsRLCK318	RECEPTOR-LIKE CYTOPLASMIC KINASE 318	Receptor-like Cytoplasmic Kinase 318	RECEPTOR-LIKE CYTOPLASMIC KINASE 318		11	LOC_Os11g10710.	 Seed	Os11g0213000	LOC_Os11g10710.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
10870	_	OsWD40-189, OsDWD21, DWD21	_	DWD motif- containing protein 21			11			Os11g0594200	LOC_Os11g38170.1, LOC_Os11g38170.2						
10871	WD40-190	OsWD40-190	WD40-REPEAT TRANSCRIPTION FACTOR 190	WD40-repeat transcription factor 190	WD40-REPEAT TRANSCRIPTION FACTOR 190		11		 Vegetative organ - Leaf,  Coloration - Anthocyanin	Os11g0610700	LOC_Os11g39650.1				GO:0031540 - regulation of anthocyanin biosynthetic process	TO:0000326 - leaf color	
10872	_	OsWD40-191	_				11			Os11g0660400	LOC_Os11g43895.1						
10873	_	OsWD40-192	_				12	CT830828.		Os12g0129400	LOC_Os12g03540.1						
10874	_	OsWD40-193, RIP1	_	RICE IMMATURE POLLEN 1		rip1	12	DQ491004.		Os12g0132400	LOC_Os12g03822.1, LOC_Os12g03822.2				GO:0005634 - nucleus		
10875	WD40-194	OsWD40-194, OsDWD12, DWD12, OsWDR48	WD40 PROTEIN 194	DWD motif- containing protein 12, WD40-REPEAT PROTEIN48	WD40 PROTEIN 194		12			Os12g0165000	LOC_Os12g06810.1, LOC_Os12g06810.2, LOC_Os12g06810.3, LOC_Os12g06810.4				GO:0010311 - lateral root formation		
10876	_	OsWD40-195	_				12			Os12g0172500	LOC_Os12g07450.1, LOC_Os12g07450.2, LOC_Os12g07450.3						
10877	_	OsWD40-196, OsSTA276	_				12	LOC_Os12g07874. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0178633	LOC_Os12g07874.1						PO:0009066 - anther 
10878	_	OsWD40-197	_				12	CT832923.		Os12g0294100	LOC_Os12g19590.1, LOC_Os12g19590.2, LOC_Os12g19590.3						
10879	WD40-198	OsWD40-198	WD-REPEAT PROTEIN 40-198	WD-repeat protein 40-198	WD-REPEAT PROTEIN 40-198		12			Os12g0594000	LOC_Os12g40260.1				GO:0016020 - membrane		
10880	_	OsWD40-199	_				12			Os12g0609800	LOC_Os12g41620.1						
10881	_	OsWD40-200, OsDWD50, DWD50	_	DWD motif- containing protein 50			12			Os12g0615900	LOC_Os12g42150.1				GO:0080008 - CUL4 RING ubiquitin ligase complex, GO:0005730 - nucleolus		
10882	TFIIAGAMMA1	OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1	TRANSCRIPTION FACTOR II A GAMMA SUBUNIT 1	small subunit of the transcription factor IIA located on chromosome 1, Gamma subunit of transcription factor II A, transcription factor II A gamma subunit 1	TRANSCRIPTION FACTOR II A GAMMA SUBUNIT 1	mTFIIAgamma1	1	CB097192. FJ811371-FJ811411 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901774-DQ901802 (wild rice species). EF069843-EF069903 (O. sativa and wild rice species). JQ415824-JQ415867 (wild rice species).	 Other,  Tolerance and resistance - Disease resistance	Os01g0970500	LOC_Os01g73890.1				GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005672 - transcription factor TFIIA complex, GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0005634 - nucleus	TO:0000175 - bacterial blight disease resistance	
10883	DLN32	CHR703, OsDLN32, OsCHR703	DLN REPRESSOR 32	CHD-related gene 703, chromatin remodeling factor 703, DLN repressor 32, DLN motif protein 32	DLN REPRESSOR 32		1	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0881000	LOC_Os01g65850.1				GO:0003677 - DNA binding, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0000785 - chromatin, GO:0016887 - ATPase activity, GO:0003682 - chromatin binding, GO:0004386 - helicase activity, GO:0016787 - hydrolase activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0008270 - zinc ion binding, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000074 - blast disease	
10884	_	CHR723, OsCHR723	_	CHD-related gene 723			6	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein. the most possible candidate gene for qLTG6 (QTL for low-temperature germination on chromosome 6).	 Tolerance and resistance - Stress tolerance	Os06g0102800/Os06g0102900	LOC_Os06g01320.1				GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0046872 - metal ion binding	TO:0000303 - cold tolerance	
10885	DLN39	CHR744, OsCHR744, OsDLN39	DLN REPRESSOR 39	CHD-related gene 744, DLN repressor 39, DLN motif protein 39	DLN REPRESSOR 39		2	chromodomain, helicase/ATPase, and DNA-binding domain (CHD) protein		Os02g0110700	LOC_Os02g02050.1				GO:0006342 - chromatin silencing		
10886	TRX15	OsTrx15, Trx15	THIOREDOXIN 15	Thioredoxin 15	THIOREDOXIN 15		4	Q0J9V5, Q0J9V6.	 Biochemical character	Os04g0629500	LOC_Os04g53740.1				GO:0009055 - electron carrier activity, GO:0006662 - glycerol ether metabolic process, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
10887	RMC	OsRMC, OsRLK, OsDUF26, DUF26, OsCBMIP, CBMIP, NCS, OsNCS, OsCRK5, CRK5	ROOT MEANDER CURLING	root meander curling, receptor-like protein RMC, domain of unknown function 26, CBM1-interacting protein, noe2 cell death suppressor 1, CDPK-RELATED PROTEIN KINASE 5		ncs1, ncs1-cr1, ncs1-cr2	4	AAL87185. GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root	Os04g0659300	LOC_Os04g56430.1				GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0050954 - sensory perception of mechanical stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010106 - cellular response to iron ion starvation, GO:0016301 - kinase activity, GO:0046688 - response to copper ion, GO:0010040 - response to iron(II) ion, GO:0048046 - apoplast, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009642 - response to light intensity, GO:0002215 - defense response to nematode, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0002238 - response to molecule of fungal origin, GO:0010942 - positive regulation of cell death, GO:0009751 - response to salicylic acid stimulus, GO:0009266 - response to temperature stimulus, GO:0010363 - regulation of plant-type hypersensitive response, GO:0001966 - thigmotaxis, GO:0045454 - cell redox homeostasis, GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium	TO:0000432 - temperature response trait, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000021 - copper sensitivity, TO:0000460 - light intensity sensitivity, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content, TO:0000384 - nematode damage resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0002710 - root shape, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0001054 - 4 leaf senescence stage , PO:0009005 - root 
10888	IDS1	OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2, DLN104, OsDLN104	INDETERMINATE SPIKELET 1	OsINDETERMINATE SPIKELET 1, INDETERMINATE SPIKELET1, APETALA2/ethylene-responsive element binding protein 33, APETALA2-2, DLN repressor 104, DLN motif protein 104		osids1, ids1-1	3	AP2-2 in Dai et al. 2016.	 Other,  Reproductive organ - Inflorescence,  Reproductive organ - Heading date,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0818800	LOC_Os03g60430.2, LOC_Os03g60430.1				GO:0003677 - DNA binding, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0010076 - maintenance of floral meristem identity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:2000028 - regulation of photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity	TO:0000397 - grain size, TO:0000650 - lemma length, TO:0000382 - 1000-seed weight, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000137 - days to heading, TO:0006001 - salt tolerance, TO:0002616 - flowering time, TO:0000622 - flower development trait	PO:0007601 - floral organ meristem development stage , PO:0007615 - flower development stage 
10889	MIR172A	OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a	MICRORNA172A	rice microRNA172a			9	miRBASE accession: MI0001139. AY551254. LM379345. TO:0000869: glume anatomy and morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Other,  Tolerance and resistance - Disease resistance						GO:0048506 - regulation of timing of meristematic phase transition, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex	TO:0000420 - fertility related trait, TO:0000650 - lemma length, TO:0006029 - glume number, TO:0000074 - blast disease	PO:0025395 - floral organ , PO:0000229 - flower meristem 
10890	MIR172B	OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b	MICRORNA172B	rice microRNA172b			1	miRBASE accession: MI0001140. AY551255. LM379346. target: OsbHLH153 (Os03g0171700).	 Other,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0009642 - response to light intensity	TO:0000124 - flag leaf angle, TO:0000655 - leaf development trait, TO:0000460 - light intensity sensitivity, TO:0000650 - lemma length, TO:0000429 - salt sensitivity	
10891	MIR172C	OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c	MICRORNA172C	rice microRNA172c			7	miRBASE accession: MI0001141. AY551256. LM379347.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000420 - fertility related trait	
10892	MIR172D	OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d	MICRORNA172D	rice microRNA172d			2	miRBASE accession: MI0001154. AY551253. LM379357, LM383079. 	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000420 - fertility related trait	
10893	IAA1	OsIAA1, OsIAA4	AUX/IAA PROTEIN 1	Aux/IAA protein 1	AUX/IAA PROTEIN 1		1	OsIAA4 in Nakamura et al. 2006. an early auxin response gene.	 Tolerance and resistance - Stress tolerance	Os01g0178500 	LOC_Os01g08320.1				GO:0051707 - response to other organism, GO:0009733 - response to auxin stimulus, GO:0009609 - response to symbiotic bacterium, GO:0042594 - response to starvation	TO:0000163 - auxin sensitivity	
10894	IAA2	OsIAA2	AUX/IAA PROTEIN 2	Aux/IAA protein 2, Indoleacetic Acid-Induced 2	AUX/IAA PROTEIN 2		1	Q9LG86.	 Tolerance and resistance - Stress tolerance	Os01g0190300 	LOC_Os01g09450.2, LOC_Os01g09450.1				GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0009629 - response to gravity, GO:0005634 - nucleus	TO:0002693 - gravity response trait	
10895	IAA4	OsIAA4, IAA20, OsIAA20	AUX/IAA PROTEIN 4	Aux/IAA protein 4	AUX/IAA PROTEIN 4		1	A2ZRY8. IAA20 in Wang et al. 2022. GO:1990110: callus formation.		Os01g0286900 	LOC_Os01g18360.2, LOC_Os01g18360.1				GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000428 - callus induction	
10896	IAA5	OsIAA5	AUX/IAA PROTEIN 5	Aux/IAA protein 5	AUX/IAA PROTEIN 5		1	Q0JKG7. GO:1990110: callus formation.		Os01g0675700	LOC_Os01g48444.1				GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000163 - auxin sensitivity, TO:0000428 - callus induction	
10897	IAA6	OsIAA6	AUX/IAA PROTEIN 6	Aux/IAA protein 6	AUX/IAA PROTEIN 6		1	Q8LQ74. GO:0080186: developmental vegetative growth.	 Heterochrony,  Tolerance and resistance - Stress tolerance	Os01g0741900	LOC_Os01g53880.7, LOC_Os01g53880.1, LOC_Os01g53880.2, LOC_Os01g53880.3, LOC_Os01g53880.4, LOC_Os01g53880.5, LOC_Os01g53880.6				GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006417 - regulation of translation, GO:0009733 - response to auxin stimulus, GO:0006351 - transcription, DNA-dependent, GO:0009408 - response to heat, GO:0009609 - response to symbiotic bacterium, GO:0034021 - response to silicon dioxide, GO:0005634 - nucleus, GO:0040034 - regulation of development, heterochronic	TO:0000259 - heat tolerance	
10898	IAA7	OsIAA7, DLN51, OsDLN51	_	Aux/IAA protein 7, DLN repressor 51, DLN motif protein 51			2	Q6H543.	 Tolerance and resistance - Disease resistance	Os02g0228900 	LOC_Os02g13520.1				GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0051607 - defense response to virus	TO:0000020 - black streak dwarf virus resistance	
10899	IAA8	OsIAA8	AUX/IAA PROTEIN 8	Aux/IAA protein 8, INDOLE-3-ACETIC ACID INDUCIBLE 8-LIKE	AUX/IAA PROTEIN 8		2	Q6Z5M0.	 Other,  Tolerance and resistance - Stress tolerance	Os02g0723400 	LOC_Os02g49160.1				GO:0009733 - response to auxin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0009415 - response to water, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0000237 - water stress trait, TO:0000276 - drought tolerance	
10900	IAA9	OsIAA9, OsIAA2	AUX/IAA PROTEIN 9	Aux/IAA protein 9	AUX/IAA PROTEIN 9		2	OsIAA2 in Remington et al. 2004 and Nakamura et al. 2006. BAF10351.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0805100 	LOC_Os02g56120.3, LOC_Os02g56120.2, LOC_Os02g56120.1				GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0010104 - regulation of ethylene mediated signaling pathway	TO:0002693 - gravity response trait, TO:0000173 - ethylene sensitivity, TO:0000163 - auxin sensitivity, TO:0000227 - root length	PO:0000016 - lateral root primordium 
10901	IAA10	OsIAA10, OsIAA5, DLN71, OsDLN71	_	Aux/IAA protein 10, DLN repressor 71, DLN motif protein 71, Indoleacetic Acid-Induced 10		osiaa10, osiaa10-1, osiaa10-2, iaa10	2	Q0DWF2. D15870. OsIAA5 in Nakamura et al. 2006. Auxin-induced protein. GO:1990110: callus formation.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity	Os02g0817600 	LOC_Os02g57250.2, LOC_Os02g57250.1				GO:0048316 - seed development, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0051607 - defense response to virus, GO:0050687 - negative regulation of defense response to virus, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0001558 - regulation of cell growth, GO:0005737 - cytoplasm	TO:0000163 - auxin sensitivity, TO:0000734 - grain length, TO:0000148 - viral disease resistance, TO:0000653 - seed development trait, TO:0000382 - 1000-seed weight, TO:0000207 - plant height, TO:0000411 - seed length to width ratio, TO:0000590 - grain weight, TO:0000357 - growth and development trait, TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000428 - callus induction	PO:0001170 - seed development stage , PO:0005052 - plant callus 
10902	IAA13	OsIAA13, OsIAA1, OsiIAA1	AUX/IAA PROTEIN 13	Aux/IAA protein 13, Aux/IAA protein 1	AUX/IAA PROTEIN 13	Osiaa13, iaa13	3	AJ251791. AJ563599. A2XLV9, Q10D34. OsIAA1 in Thakur et al. 2001 and Nakamura et al. 2006.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0742900	LOC_Os03g53150.1, LOC_Os03g53150.2				GO:0009651 - response to salt stress, GO:0010618 - aerenchyma formation, GO:0010311 - lateral root formation, GO:0010102 - lateral root morphogenesis, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009630 - gravitropism, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0034059 - response to anoxia	TO:0000259 - heat tolerance, TO:0001013 - lateral root number, TO:0006001 - salt tolerance	PO:0000258 - root cortex , PO:0005029 - root primordium 
10903	IAA14	OsIAA14, AUX/IAA14, OsAUX/IAA14	AUX/IAA PROTEIN 14	Aux/IAA protein 14	AUX/IAA PROTEIN 14		3		 Tolerance and resistance - Stress tolerance	Os03g0797800 	LOC_Os03g58350.1				GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000259 - heat tolerance	
10904	IAA15	OsIAA15	AUX/IAA PROTEIN 15	Aux/IAA protein 15	AUX/IAA PROTEIN 15		5			Os05g0178600	LOC_Os05g08570.6, LOC_Os05g08570.5, LOC_Os05g08570.4, LOC_Os05g08570.1, LOC_Os05g08570.2, LOC_Os05g08570.3				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus		
10905	IAA16	OsIAA16, DLN134, OsDLN134	AUX/IAA PROTEIN 16	Aux/IAA protein 16, DLN repressor 134, DLN motif protein 134	AUX/IAA PROTEIN 16		5			Os05g0186900	LOC_Os05g09480.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0006351 - transcription, DNA-dependent		
10906	IAA17	OsIAA17, OsIAA17q5, IAA17q5	_	Aux/IAA protein 17			5		 Tolerance and resistance - Stress tolerance	Os05g0230700 	LOC_Os05g14180.1, LOC_Os05g14180.2				GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0007584 - response to nutrient, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus	TO:0000102 - phosphorus sensitivity	
10907	IAA18	OsIAA18	_	Aux/IAA protein 18			5		 Tolerance and resistance - Stress tolerance	Os05g0523300 	LOC_Os05g44810.1, LOC_Os05g44810.2, LOC_Os05g44810.3				GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
10908	IAA19	OsIAA19	_	Aux/IAA protein 19, Auxin-responsive Aux/IAA gene family member 19			5			Os05g0559400	LOC_Os05g48590.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0006351 - transcription, DNA-dependent		
10909	IAA21	OsIAA21	AUX/IAA PROTEIN 21	Aux/IAA protein 21	AUX/IAA PROTEIN 21		6			Os06g0335500 	LOC_Os06g22870.1, LOC_Os06g22870.2						
10910	IAA22	OsIAA22	_	Aux/IAA protein 22, INDOLE-3-ACETIC ACID INDUCIBLE 22			6	Q69TU6.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0355300	LOC_Os06g24850.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0009415 - response to water	TO:0000237 - water stress trait	
10911	IAA24	OsIAA24	AUX/IAA PROTEIN 24	Aux/IAA protein 24, auxin response element-binding transcriptional factor 24	AUX/IAA PROTEIN 24		7	Q6ZL5.	 Other	Os07g0182400	LOC_Os07g08460.2, LOC_Os07g08460.1				GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000163 - auxin sensitivity, TO:0002672 - auxin content	
10912	IAA25	OsIAA25	_	Aux/IAA protein 25			8		 Tolerance and resistance - Stress tolerance	Os08g0109400 	LOC_Os08g01780.1, LOC_Os08g01780.2				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway, GO:0009415 - response to water, GO:0009629 - response to gravity	TO:0000237 - water stress trait, TO:0002693 - gravity response trait	
10913	IAA26	OsIAA26	AUX/IAA PROTEIN 26	Aux/IAA protein 26	AUX/IAA PROTEIN 26		9	GO:1990110: callus formation.	 Vegetative organ - Root	Os09g0527700 	LOC_Os09g35870.1				GO:0009734 - auxin mediated signaling pathway, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000428 - callus induction, TO:0000227 - root length	
10914	IAA27	OsIAA27	AUX/IAA PROTEIN 27	Aux/IAA protein 27, INDOLE-3-ACETIC ACID INDUCIBLE 27	AUX/IAA PROTEIN 27		11			Os11g0221000 	LOC_Os11g11410.1, LOC_Os11g11410.2, LOC_Os11g11410.3, LOC_Os11g11410.4				GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
10915	IAA28	OsIAA28	_	Aux/IAA protein 28			11			Os11g0221200	LOC_Os11g11420.1				GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
10916	IAA29	OsIAA29, OsEnS-141	AUX/IAA PROTEIN 29	Aux/IAA protein 29, endosperm-specific gene 141	AUX/IAA PROTEIN 29	osiaa29, osiaa29-1, osiaa29-2	11		 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm	Os11g0221300	LOC_Os11g11430.1, LOC_Os11g11430.2				GO:0005634 - nucleus, GO:0010431 - seed maturation, GO:0009408 - response to heat, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009793 - embryonic development ending in seed dormancy, GO:0048316 - seed development, GO:0009960 - endosperm development, GO:0010581 - regulation of starch biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0009734 - auxin mediated signaling pathway	TO:0002656 - starch grain shape, TO:0002672 - auxin content, TO:0000653 - seed development trait, TO:0000113 - giant embryo, TO:0000162 - seed quality, TO:0000620 - embryo development trait, TO:0000696 - starch content, TO:0000153 - relative yield, TO:0000590 - grain weight, TO:0000189 - embryoless, TO:0002655 - starch grain size, TO:0000259 - heat tolerance, TO:0000396 - grain yield, TO:0002653 - endosperm storage protein content	PO:0007633 - endosperm development stage , PO:0001170 - seed development stage , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009010 - seed , PO:0007632 - seed maturation stage , PO:0005360 - aleurone layer 
10917	IAA30	OsIAA30	AUX/IAA PROTEIN 30	Aux/IAA protein 30	AUX/IAA PROTEIN 30		12			Os12g0601300	LOC_Os12g40890.1				GO:0009734 - auxin mediated signaling pathway, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
10918	RAI1	OsRAI1, OsbHLH003, bHLH003, bHLH3	RAC IMMUNITY 1	Rac Immunity1, Rac Immunity 1, basic helix-loop-helix protein 003	BASIC HELIX-LOOP-HELIX PROTEIN 3		3	HQ858849. bHLH transcription factor.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0135700	LOC_Os03g04310.1, LOC_Os03g04310.2				GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0000112 - disease resistance	
10919	CERK1	OsCERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9, OsCERK1/OsLYK9, OsLYK9, LYK9	CHITIN ELICITOR RECEPTOR KINASE 1	chitin elicitor receptor kinase 1, chitinelicitor receptor kinase-1, LysM receptor-like kinase 9	CHITIN ELICITOR RECEPTOR KINASE 1	oscerk1, Oscerk1, Oscerk1-1, cerk1, cerk1-2	8	GO:0035556:intracellular signal transduction. GO:0061057: peptidoglycan recognition protein signaling pathway. GO:0036377: arbuscular mycorrhizal association. rice NFR1/LYK3 ortholog. GO:1903409: reactive oxygen species biosynthetic process. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:2000023: regulation of lateral root development.	 Tolerance and resistance,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os08g0538300	LOC_Os08g42580.4, LOC_Os08g42580.1				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009609 - response to symbiotic bacterium, GO:0019722 - calcium-mediated signaling, GO:0009608 - response to symbiont, GO:0009603 - detection of symbiotic fungus, GO:0009877 - nodulation, GO:0042742 - defense response to bacterium, GO:0009610 - response to symbiotic fungus, GO:0009617 - response to bacterium, GO:0048527 - lateral root development, GO:0004674 - protein serine/threonine kinase activity, GO:0050850 - positive regulation of calcium-mediated signaling, GO:0019199 - transmembrane receptor protein kinase activity, GO:0032491 - detection of molecule of fungal origin, GO:0010200 - response to chitin, GO:0052064 - induction by symbiont of defense-related host reactive oxygen species production, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0005886 - plasma membrane, GO:0009817 - defense response to fungus, incompatible interaction, GO:0005783 - endoplasmic reticulum, GO:0051480 - cytosolic calcium ion homeostasis, GO:0002237 - response to molecule of bacterial origin, GO:0032494 - response to peptidoglycan, GO:0043410 - positive regulation of MAPKKK cascade, GO:0045089 - positive regulation of innate immune response	TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0001013 - lateral root number, TO:0000074 - blast disease, TO:0000112 - disease resistance	PO:0006036 - root epidermis , PO:0000258 - root cortex , PO:0007520 - root development stage 
10920	LYK4	OsLysM-RLK1, LysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2	LYSM-TYPE RECEPTOR-LIKE KINASE 4	LysM receptor-like kinase 1, LysM-type receptor-like kinase4, NFR5/NFP ortholog, NODE FACTOR RECPETOR 5	LYSM-TYPE RECEPTOR-LIKE KINASE 4	Osnfr5, osnfr5	2	a unique rice homolog of LjNFR5/MtNFP.  the closest rice ortholog of the Nod factor receptor component NFR5 from Lotus japonicas. GO:0036377: arbuscular mycorrhizal association.		Os02g0193000	LOC_Os02g09960.1				GO:0032491 - detection of molecule of fungal origin, GO:0050850 - positive regulation of calcium-mediated signaling, GO:0009877 - nodulation, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus		
10921	LYK5	OsLysM-RLK2, LysM-RLK2, OsLYK5, OsNFR5, NFR5, OsMYR1/OsLYK2, OsMYR1, OsLYK2, MYR1, LYK2, NFR5/MYR1	LYSM-TYPE RECEPTOR-LIKE KINASE 5	LysM receptor-like kinase 2, LysM-type receptor-like kinase5, Nod-Factor Receptor 5, Myc Factor Receptor 1, NODE FACTOR RECPETOR 5	LYSM-TYPE RECEPTOR-LIKE KINASE 5	Osmyr1, Osmyr1-1/Oslyk2-1, Osmyr1-2, Osmyr1-3, osnfr5, osnfr5-1, nfr5/myr1	3	OsMYR1/OsLYK2 in He et al. 2019. GO:0036377: arbuscular mycorrhizal association. GO:1900150: regulation of defense response to fungus. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:2000023: regulation of lateral root development. GO:0036377: arbuscular mycorrhizal association.	 Vegetative organ - Root,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os03g0233300	LOC_Os03g13080.1				GO:0031348 - negative regulation of defense response, GO:0043408 - regulation of MAPKKK cascade, GO:0032491 - detection of molecule of fungal origin, GO:0048527 - lateral root development, GO:0002238 - response to molecule of fungal origin, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus, GO:0009603 - detection of symbiotic fungus, GO:0070492 - oligosaccharide binding, GO:0051480 - cytosolic calcium ion homeostasis, GO:0005886 - plasma membrane, GO:0008061 - chitin binding	TO:0001013 - lateral root number, TO:0000074 - blast disease	PO:0006036 - root epidermis , PO:0000258 - root cortex 
10922	LYK1	OsLysM-RLK3, LysM-RLK3, OsLYK	LYSM-TYPE RECEPTOR-LIKE KINASE 1	LysM receptor-like kinase 3, LysM-type receptor-like kinase1	LYSM-TYPE RECEPTOR-LIKE KINASE 1		1			Os01g0546000	LOC_Os01g36550.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
10923	_	OsLysM-RLK4, LysM-RLK4, OsRLK3	_	LysM receptor-like kinase 4, LysM kinase 3			1	OsRLK3 in Wang et al. 2021. a defense-related LysM kinase.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os01g0741200	LOC_Os01g53840.1				GO:0010200 - response to chitin, GO:0002215 - defense response to nematode, GO:0005524 - ATP binding, GO:0009751 - response to salicylic acid stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0009624 - response to nematode, GO:0009753 - response to jasmonic acid stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0002238 - response to molecule of fungal origin	TO:0000172 - jasmonic acid sensitivity, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000384 - nematode damage resistance	
10924	LYK2	OsLysM-RLK5, LysM-RLK5, OsLYK2	LYSM-TYPE RECEPTOR-LIKE KINASE 2	LysM receptor-like kinase 5, LysM-type receptor-like kinase2	LYSM-TYPE RECEPTOR-LIKE KINASE 2		6			Os06g0625300	LOC_Os06g41980.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
10925	LYK3	OsLysM-RLK6, LysM-RLK6, OsLYK3	LYSM-TYPE RECEPTOR-LIKE KINASE 3	LysM receptor-like kinase 6, LysM-type receptor-like kinase3	LYSM-TYPE RECEPTOR-LIKE KINASE 3		6			Os06g0625200	LOC_Os06g41960.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
10926	LYK6	OsLysM-RLK7, LysM-RLK7, OsLYK6	LYSM-TYPE RECEPTOR-LIKE KINASE 6	LysM receptor-like kinase 7, LysM-type receptor-like kinase6	LYSM-TYPE RECEPTOR-LIKE KINASE 6		11			Os11g0557500	LOC_Os11g35330.1				GO:0016998 - cell wall macromolecule catabolic process, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
10927	RLCK330	OsLysM-RLK8, LysM-RLK8, OsRLCK330	RECEPTOR-LIKE CYTOPLASMIC KINASE 330	LysM receptor-like kinase 8	RECEPTOR-LIKE CYTOPLASMIC KINASE 330		11			Os11g0549300	LOC_Os11g34624.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016998 - cell wall macromolecule catabolic process, GO:0005524 - ATP binding		
10928	RLCK276	OsLysM-RLK10, LysM-RLK10, OsRLCK276, OsCERK2/OsRLK10, OsCERK2, OsRLK10, CERK2, RLK10	RECEPTOR-LIKE CYTOPLASMIC KINASE 276	LysM receptor-like kinase 10, Receptor-like Cytoplasmic Kinase 276, chitin elicitor receptor kinase 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 276	oscerk2	9	AB510402. D7UPN3. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance	Os09g0511000	LOC_Os09g33630.1, LOC_Os09g33630.2, LOC_Os09g33630.3				GO:0002238 - response to molecule of fungal origin, GO:0043621 - protein self-association, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009610 - response to symbiotic fungus, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0008061 - chitin binding, GO:0010200 - response to chitin		
10929	ICE2	OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2	INDUCER OF CBF EXPRESSION 2	basic helix-loop-helix protein 001, Inducer of CBF expression 2, inducer of C-repeat binding factors expression 2	INDUCER OF CBF EXPRESSION 2	c-osice2	1	HQ858878. bHLH transcription factor. a rice homolog of Arabidopsis ICE (inducer of CBF expression). orthologues of AtICE1. GO:2000033: regulation of seed dormancy process. GO:1902265: abscisic acid homeostasis.	 Other,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os01g0928000	LOC_Os01g70310.2, LOC_Os01g70310.1				GO:0009266 - response to temperature stimulus, GO:0010162 - seed dormancy, GO:0010231 - maintenance of seed dormancy, GO:0009628 - response to abiotic stimulus, GO:0010374 - stomatal complex development, GO:0009409 - response to cold, GO:0046345 - abscisic acid catabolic process, GO:0010115 - regulation of abscisic acid biosynthetic process	TO:0000253 - seed dormancy, TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait, TO:0000432 - temperature response trait	PO:0009010 - seed 
10930	BHLH2	OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1	BASIC HELIX-LOOP-HELIX PROTEIN 2	basic helix-loop-helix protein 002, Inducer of CBF expression 1	BASIC HELIX-LOOP-HELIX PROTEIN 2	osbhlh002-1, c-osice1, t-osice1	11	OsICE1 is a master transcription factor of the cold stress signaling. a rice homolog of Arabidopsis ICE (inducer of CBF expression). orthologues of AtICE1.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os11g0523700	LOC_Os11g32100.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0010440 - stomatal lineage progression, GO:0050826 - response to freezing, GO:0009631 - cold acclimation, GO:0009409 - response to cold, GO:0010374 - stomatal complex development	TO:0000303 - cold tolerance, TO:0006003 - oligosaccharide content	PO:0009010 - seed 
10931	_	OsbHLH004	_	basic helix-loop-helix protein 004	_		10			Os10g0544200	LOC_Os10g39750.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
10932	BHLH6	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35	BASIC HELIX-LOOP-HELIX PROTEIN 6	basic helix-loop-helix protein 006, Transcription factor bHLH35	BASIC HELIX-LOOP-HELIX PROTEIN 6	bhlh6, bhlh6-1, bhlh6-2	4	AB040744. BF889463. bHLH35 in Sim et al. 2018. TO:0020102: phosphate content. TO:0001051: root hair density. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0301500	LOC_Os04g23550.2, LOC_Os04g23550.1				GO:0009651 - response to salt stress, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0031347 - regulation of defense response, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0055062 - phosphate ion homeostasis, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0002665 - root hair length, TO:0000227 - root length, TO:0000576 - stem length, TO:0000074 - blast disease, TO:0000207 - plant height, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009005 - root 
10933	_	OsbHLH155	_	basic helix-loop-helix protein 155	_		6			Os06g0724800	LOC_Os06g50900.1				GO:0005634 - nucleus		
10934	COI1	OsCOI1a, OsCOI1, Os_F0728, COI1a, F0728, OsFBL4, FBL4	CORONATINE INSENSITIVE 1	coronatine insensitive 1a, CORONATINE INSENSITIVE1, coronatine insensitive 1, F-box-type E3 ubiquitin ligase L4		oscoi1a	1	AY168645. DQ028826. a component of the SCF E3 ubiquitin ligase complex. an F-box protein. TO:0020068: beta-glucan content.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll	Os01g0853400	LOC_Os01g63420.3, LOC_Os01g63420.2, LOC_Os01g63420.1				GO:0009611 - response to wounding, GO:0080027 - response to herbivore, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0002213 - defense response to insect, GO:0010118 - stomatal movement, GO:0009625 - response to insect, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0031348 - negative regulation of defense response, GO:0019005 - SCF ubiquitin ligase complex, GO:0010218 - response to far red light, GO:0009909 - regulation of flower development, GO:0009754 - detection of jasmonic acid stimulus, GO:0051607 - defense response to virus, GO:0009753 - response to jasmonic acid stimulus, GO:0010150 - leaf senescence, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009641 - shade avoidance, GO:0050832 - defense response to fungus	TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000403 - leaf-folder resistance, TO:0006007 - polysaccharide content, TO:0000249 - leaf senescence, TO:0000020 - black streak dwarf virus resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance	
10935	COI1B	OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646, OsFBL23, FBL23, OsCOl-1, COl-1	CORONATINE INSENSITIVE 1B	coronatine insensitive 1b, F-box protein 260, F-box-type E3 ubiquitin ligase L23	F-BOX PROTEIN 260	oscoi1b-1, oscoi1b	5	a JA receptor. OsCOl-1 in Wang et al. 2023. TO:0020068: beta-glucan content.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os05g0449500	LOC_Os05g37690.1				GO:0080027 - response to herbivore, GO:0002213 - defense response to insect, GO:0051607 - defense response to virus, GO:0010118 - stomatal movement, GO:0009909 - regulation of flower development, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009641 - shade avoidance, GO:0009611 - response to wounding, GO:0009625 - response to insect, GO:0009754 - detection of jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0019005 - SCF ubiquitin ligase complex, GO:0010218 - response to far red light, GO:0010150 - leaf senescence, GO:0002215 - defense response to nematode	TO:0000074 - blast disease, TO:0000396 - grain yield, TO:0000298 - chlorophyll ratio, TO:0000020 - black streak dwarf virus resistance, TO:0000180 - spikelet fertility, TO:0006007 - polysaccharide content, TO:0002712 - stay green trait, TO:0000657 - spikelet anatomy and morphology trait, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance, TO:0000031 - silicon sensitivity, TO:0000249 - leaf senescence, TO:0000384 - nematode damage resistance, TO:0000590 - grain weight	PO:0001054 - 4 leaf senescence stage 
10936	NHX3	OsNHX3, OsNHX2, NHX2	NA+/H+ ANTIPORTER 3	Na+/H+ antiporter 3, NHX-type antiporter 3, Sodium/hydrogen antiporter 3	NA+/H+ ANTIPORTER 3		5	AY360145. AB531433. Oryza sativa subsp. Indica: BGIOSGA018801, Oryza rufipogon: ORUFI05G03390, Oryza meridionalis: OMERI05G03260, Oryza nivara: ONIVA05G03230, Oryza glaberrima: ORGLA05G0031000, Oryza barthii: OBART05G03250, Oryza glumipatula: OGLUM05G03300, Oryza punctata: OPUNC05G03110, Oryza brachyantha: OB05G13170. OsNHX2 in Prodjinoto et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0148600	LOC_Os05g05590.1				GO:0055078 - sodium ion homeostasis, GO:0055081 - anion homeostasis, GO:0005773 - vacuole, GO:0009651 - response to salt stress, GO:0009725 - response to hormone stimulus, GO:0016021 - integral to membrane, GO:0015385 - sodium:hydrogen antiporter activity, GO:0006885 - regulation of pH	TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0020104 - leaf sheath , PO:0009005 - root 
10938	AMT5;1	OsAMT5.1, OsAMT5;1	AMMONIUM TRANSPORTER 5;1	ammonium transporter 5 member 1	AMMONIUM TRANSPORTER 5;1		12		 Biochemical character	Os12g0105100	LOC_Os12g01420.1				GO:0008519 - ammonium transmembrane transporter activity, GO:0016021 - integral to membrane		
10939	AMT5;2	OsAMT5.2, OsAMT5;2	AMMONIUM TRANSPORTER 5;2	ammonium transporter 5 member 2	AMMONIUM TRANSPORTER 5;2		11		 Biochemical character	Os11g0105300	LOC_Os11g01410.1				GO:0008519 - ammonium transmembrane transporter activity, GO:0016021 - integral to membrane		
10941	GSK1	Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21	GSK3-LIKE KINASE 1	GSK3/SHAGGY-Like Kinase 1, glycogen synthase kinase3-like gene 1, GSK3/SHAGGY-Like Kinase 21, GSK3-like Kinase 1	GSK3-LIKE KINASE 1		1	Q9LWN0. BAA92966. an orthologue of the Arabidopsis brassinosteroid insensitive 2 (BIN2). a BIN2 homolog. a GSK3/SHAGGY-like kinase clade II member. GO:1902911: protein kinase complex. GO:0106310: protein serine kinase activity. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance	Os01g0205700	LOC_Os01g10840.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009825 - multidimensional cell growth, GO:0009965 - leaf morphogenesis, GO:0005524 - ATP binding, GO:0009742 - brassinosteroid mediated signaling, GO:0005829 - cytosol, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0005886 - plasma membrane, GO:0009729 - detection of brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0046827 - positive regulation of protein export from nucleus, GO:0042538 - hyperosmotic salinity response	TO:0000153 - relative yield, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
10942	BIN2	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2	BRASSINOSTEROID-INSENSITIVE 2	GSK3/SHAGGY-Like Kinase 2, GSK3/SHAGGY-LIKE KINASE2, BRASSINOSTEROID-INSENSITIVE2, GSK3/SHAGGY-Like Kinase 22, GSK3-like Kinase 7, Shaggy/GSK3-like kinase 22, Glycogen synthase kinase 2		OsGSK2typeA, OsGSK2typeB	5	a GSK3/SHAGGY-like kinase clade II member. one of the Arabidopsis AtSK21 orthologs in rice. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. OsSK22/OsGSK7 in Thitisaksakul et al. 2017. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.  TO:0000789: bud morphology trait.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0207500	LOC_Os05g11730.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005634 - nucleus, GO:0045926 - negative regulation of growth, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0005737 - cytoplasm, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009729 - detection of brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0009825 - multidimensional cell growth, GO:0009965 - leaf morphogenesis, GO:0042538 - hyperosmotic salinity response, GO:0046827 - positive regulation of protein export from nucleus, GO:0042127 - regulation of cell proliferation, GO:0009826 - unidimensional cell growth, GO:0009741 - response to brassinosteroid stimulus, GO:0009408 - response to heat	TO:0000148 - viral disease resistance, TO:0000544 - mesocotyl length, TO:0002677 - brassinosteroid sensitivity, TO:0000734 - grain length, TO:0000259 - heat tolerance, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0000020 - black streak dwarf virus resistance, TO:0002676 - brassinosteroid content, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
10943	SKETHA	GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8	SHAGGY-LIKE KINASE ETHA	GSK3/SHAGGY-Like Kinase 4, shaggy-like kinase etha, GSK3/SHAGGY-Like Kinase 24, GSK3-like Kinase 8	SHAGGY-LIKE KINASE ETHA		6	Y13437. a rice ortholog of AtBIN2. a GSK3/SHAGGY-like kinase clade II member. OsSK24/OsGSK8 in Thitisaksakul et al. 2017.		Os06g0547900	LOC_Os06g35530.1				GO:0042538 - hyperosmotic salinity response, GO:0009825 - multidimensional cell growth, GO:0005829 - cytosol, GO:0009965 - leaf morphogenesis, GO:0009742 - brassinosteroid mediated signaling, GO:0009729 - detection of brassinosteroid stimulus, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009733 - response to auxin stimulus, GO:0046827 - positive regulation of protein export from nucleus		
10945	ILI1	OsbHLH154, bHLH154, OsILI1	INCREASED LEAF INCLINATION 1	Increased Leaf Inclination1, INCREASED LEAF INCLINATION 1, basic helix-loop-helix protein 154	BASIC HELIX-LOOP-HELIX PROTEIN 154	ili1-D	4		 Vegetative organ - Leaf,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os04g0641700	LOC_Os04g54900.1				GO:0010086 - embryonic root morphogenesis, GO:0009742 - brassinosteroid mediated signaling, GO:0009826 - unidimensional cell growth, GO:0009640 - photomorphogenesis, GO:0005773 - vacuole, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase	TO:0002688 - leaf lamina joint bending, TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle	
10946	ILI2	OsILI2, OsbHLH186, bHLH186, ATAC2/ILI2, ATAC2, OsATAC2	INCREASED LEAF INCLINATION 2	Increased Leaf Inclination 2, basic helix-loop-helix protein 186, Alternative TalC Target locus 2		atac-1	11		 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os11g0603000	LOC_Os11g39000.2, LOC_Os11g39000.1				GO:0009826 - unidimensional cell growth, GO:0009413 - response to flooding, GO:0003677 - DNA binding, GO:0009640 - photomorphogenesis, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009741 - response to brassinosteroid stimulus, GO:0009845 - seed germination, GO:0009629 - response to gravity, GO:0002237 - response to molecule of bacterial origin, GO:0009630 - gravitropism, GO:0009590 - detection of gravity	TO:0002693 - gravity response trait, TO:0000524 - submergence tolerance	PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage 
10947	ILI3	OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2	INCREASED LEAF INCLINATION 3	Increased Leaf Inclination3, basic helix-loop-helix protein 153, BRASSINOSTEROID UPREGULATED 1-LIKE2, BRASSINOSTEROID UPREGULATED 1-LIKE 2			3	Q10R47. miR172b-target. 	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0171700	LOC_Os03g07540.1				GO:0009733 - response to auxin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0040008 - regulation of growth, GO:0009741 - response to brassinosteroid stimulus, GO:0009642 - response to light intensity, GO:0046983 - protein dimerization activity, GO:0009739 - response to gibberellin stimulus	TO:0000655 - leaf development trait, TO:0000206 - leaf angle, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000124 - flag leaf angle, TO:0000460 - light intensity sensitivity, TO:0002677 - brassinosteroid sensitivity	
10948	ILI5	ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170	INCREASED LEAF INCLINATION 5	Increased Leaf Inclination 5, POSITIVE REGULATOR OF GRAIN LENGTH 2, BRASSINOSTEROID UPREGULATED 1-LIKE1, BRASSINOSTEROID UPREGULATED1 LIKE1, basic helix-loop-helix protein 170		osbul1, OsBUL1D	2	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os02g0747900	LOC_Os02g51320.1				GO:0010224 - response to UV-B, GO:0051510 - regulation of unidimensional cell growth, GO:0009409 - response to cold, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling	TO:0002687 - cell elongation trait, TO:0002677 - brassinosteroid sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0000601 - UV-B light sensitivity, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000303 - cold tolerance	PO:0009046 - flower , PO:0009051 - spikelet 
10949	ILI6	ILI6, OsILI6, PGL1, OsPGL1	INCREASED LEAF INCLINATION 6	Increased Leaf Inclination6, POSITIVE REGULATOR OF GRAIN LENGTH 1			3	Atypical basic helix-loop-helix (bHLH) protein	 Character as QTL - Yield and productivity,  Seed - Morphological traits	Os03g0171300	LOC_Os03g07510.1, LOC_Os03g07510.2				GO:0009826 - unidimensional cell growth, GO:0010086 - embryonic root morphogenesis, GO:0009640 - photomorphogenesis, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0005773 - vacuole, GO:0009742 - brassinosteroid mediated signaling	TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000734 - grain length	
10950	ILI7	OsILI7, OsbHLH173, bHLH173	INCREASED LEAF INCLINATION 7	Increased Leaf Inclination7, basic helix-loop-helix protein 173			10		 Vegetative organ - Leaf	Os10g0404300	LOC_Os10g26460.1				GO:0005773 - vacuole, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009640 - photomorphogenesis, GO:0009742 - brassinosteroid mediated signaling, GO:0009826 - unidimensional cell growth, GO:0010086 - embryonic root morphogenesis	TO:0000206 - leaf angle	
10951	IBH1	Os IBH1, OsIBH1, OsbHLH175, bHLH175	ILI1-BINDING BHLH PROTEIN 1	ILI1Binding bHLH Protein1, ILI1 Binding bHLH 1, basic helix-loop-helix protein 175	ILI1-BINDING BHLH PROTEIN 1		4	Q7XR02.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Seed - Morphological traits	Os04g0660100	LOC_Os04g56500.1				GO:0009741 - response to brassinosteroid stimulus, GO:0051511 - negative regulation of unidimensional cell growth, GO:0009826 - unidimensional cell growth, GO:0006351 - transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0040008 - regulation of growth, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002687 - cell elongation trait, TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle	
10952	GELP1	OsGELP1, OsEST1	GDSL ESTERASE/LIPASE PROTEIN 1	GDSL esterase/lipase protein 1, esterase 1	GDSL ESTERASE/LIPASE PROTEIN 1		1		 Biochemical character	Os01g0214200	LOC_Os01g11570.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10953	GELP2	OsGELP2, OsGELP2a, OsGELP2b	GDSL ESTERASE/LIPASE PROTEIN 2	GDSL esterase/lipase protein 2	GDSL ESTERASE/LIPASE PROTEIN 2		1		 Biochemical character	Os01g0214600	LOC_Os01g11620.1, LOC_Os01g11620.2				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10954	GELP3	OsGELP3, OsGELP3a, OsGELP3b	GDSL ESTERASE/LIPASE PROTEIN 3	GDSL esterase/lipase protein 3	GDSL ESTERASE/LIPASE PROTEIN 3		1		 Biochemical character	Os01g0214800	LOC_Os01g11650.1, LOC_Os01g11650.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10955	GELP4	OsGELP4	GDSL ESTERASE/LIPASE PROTEIN 4	GDSL esterase/lipase protein 4	GDSL ESTERASE/LIPASE PROTEIN 4		1		 Biochemical character	Os01g0215000	LOC_Os01g11660.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10956	GELP5	OsGELP5, OsGELP5a, OsGELP5b	GDSL ESTERASE/LIPASE PROTEIN 5	GDSL esterase/lipase protein 5	GDSL ESTERASE/LIPASE PROTEIN 5		1		 Biochemical character	Os01g0215500	LOC_Os01g11700.1, LOC_Os01g11700.2				GO:0016787 - hydrolase activity		
10957	GELP6	OsGELP6	GDSL ESTERASE/LIPASE PROTEIN 6	GDSL esterase/lipase protein 6	GDSL ESTERASE/LIPASE PROTEIN 6		1		 Biochemical character	Os01g0215700	LOC_Os01g11710.1				GO:0005618 - cell wall, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process, GO:0005773 - vacuole		
10958	GELP7	OsGELP7	GDSL ESTERASE/LIPASE PROTEIN 7	GDSL esterase/lipase protein 7	GDSL ESTERASE/LIPASE PROTEIN 7		1		 Biochemical character	Os01g0216000	LOC_Os01g11730.1				GO:0006629 - lipid metabolic process, GO:0005618 - cell wall, GO:0016788 - hydrolase activity, acting on ester bonds		
10959	GELP8	OsGELP8	GDSL ESTERASE/LIPASE PROTEIN 8	GDSL esterase/lipase protein 8	GDSL ESTERASE/LIPASE PROTEIN 8		1		 Biochemical character	Os01g0216300	LOC_Os01g11740.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10960	GELP9	OsGELP9	GDSL ESTERASE/LIPASE PROTEIN 9	GDSL esterase/lipase protein 9	GDSL ESTERASE/LIPASE PROTEIN 9		1		 Biochemical character	Os01g0216400	LOC_Os01g11750.1				GO:0005618 - cell wall, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10961	GELP10	OsGELP10	GDSL ESTERASE/LIPASE PROTEIN 10	GDSL esterase/lipase protein 10	GDSL ESTERASE/LIPASE PROTEIN 10		1		 Biochemical character	Os01g0216500	LOC_Os01g11760.1				GO:0016787 - hydrolase activity		
10962	GELP11	OsGELP11	GDSL ESTERASE/LIPASE PROTEIN 11	GDSL esterase/lipase protein 11	GDSL ESTERASE/LIPASE PROTEIN 11		1		 Biochemical character	Os01g0216900	LOC_Os01g11790.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10963	GELP13	OsGELP13	GDSL ESTERASE/LIPASE PROTEIN 13	GDSL esterase/lipase protein 13	GDSL ESTERASE/LIPASE PROTEIN 13		1		 Biochemical character	Os01g0223500	LOC_Os01g12381.1						
10964	GELP14	OsGELP14	GDSL ESTERASE/LIPASE PROTEIN 14	GDSL esterase/lipase protein 14	GDSL ESTERASE/LIPASE PROTEIN 14		1		 Biochemical character	Os01g0329900	LOC_Os01g22640.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009570 - chloroplast stroma, GO:0006629 - lipid metabolic process		
10965	GELP15	OsGELP15, OsGELP15a, OsGELP15b, OsGELP15c	GDSL ESTERASE/LIPASE PROTEIN 15	GDSL esterase/lipase protein 15	GDSL ESTERASE/LIPASE PROTEIN 15		1		 Biochemical character	Os01g0330100	LOC_Os01g22660.1, LOC_Os01g22660.2, LOC_Os01g22660.3				GO:0016787 - hydrolase activity		
10966	GELP16	OsGELP16, OsGELP16a, OsGELP16b	GDSL ESTERASE/LIPASE PROTEIN 16	GDSL esterase/lipase protein 16	GDSL ESTERASE/LIPASE PROTEIN 16		1		 Biochemical character	Os01g0331100	LOC_Os01g22780.1, LOC_Os01g22780.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10967	GELP17	OsGELP17	GDSL ESTERASE/LIPASE PROTEIN 17	GDSL esterase/lipase protein 17	GDSL ESTERASE/LIPASE PROTEIN 17		1		 Biochemical character	Os01g0612900	LOC_Os01g42730.1				GO:0016787 - hydrolase activity		
10968	GELP18	OsGELP18, OsGELP18a, OsGELP18b	GDSL ESTERASE/LIPASE PROTEIN 18	GDSL esterase/lipase protein 18	GDSL ESTERASE/LIPASE PROTEIN 18		1		 Biochemical character	Os01g0649200	LOC_Os01g46080.1, LOC_Os01g46080.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10969	GELP19	OsGELP19	GDSL ESTERASE/LIPASE PROTEIN 19	GDSL esterase/lipase protein 19	GDSL ESTERASE/LIPASE PROTEIN 19		1		 Biochemical character	Os01g0649400	LOC_Os01g46090.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10970	GELP20	OsGELP20, OsGELP20a, OsGELP20b, OsGELP20c	GDSL ESTERASE/LIPASE PROTEIN 20	GDSL esterase/lipase protein 20	GDSL ESTERASE/LIPASE PROTEIN 20		1		 Biochemical character	Os01g0649900	LOC_Os01g46120.1, LOC_Os01g46120.2, LOC_Os01g46120.3				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10971	GELP21	OsGELP21, OsGELP21a, OsGELP21b, OsGELP21c	GDSL ESTERASE/LIPASE PROTEIN 21	GDSL esterase/lipase protein 21	GDSL ESTERASE/LIPASE PROTEIN 21		1	AK062412.	 Biochemical character	Os01g0650200	LOC_Os01g46169.1, LOC_Os01g46169.2, LOC_Os01g46169.3				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10972	GELP22	OsGELP22	GDSL ESTERASE/LIPASE PROTEIN 22	GDSL esterase/lipase protein 22	GDSL ESTERASE/LIPASE PROTEIN 22		1		 Biochemical character	Os01g0650900	LOC_Os01g46210.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10973	GELP23	OsGELP23	GDSL ESTERASE/LIPASE PROTEIN 23	GDSL esterase/lipase protein 23	GDSL ESTERASE/LIPASE PROTEIN 23		1		 Biochemical character	Os01g0651000	LOC_Os01g46220.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10974	GELP24	OsGELP24	GDSL ESTERASE/LIPASE PROTEIN 24	GDSL esterase/lipase protein 24	GDSL ESTERASE/LIPASE PROTEIN 24		1		 Biochemical character	Os01g0728100	LOC_Os01g52770.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10975	GELP25	OsGELP25	GDSL ESTERASE/LIPASE PROTEIN 25	GDSL esterase/lipase protein 25	GDSL ESTERASE/LIPASE PROTEIN 25		1		 Biochemical character	Os01g0748500	LOC_Os01g54470.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10976	GELP26	OsGELP26	GDSL ESTERASE/LIPASE PROTEIN 26	GDSL esterase/lipase protein 26	GDSL ESTERASE/LIPASE PROTEIN 26		1		 Biochemical character	Os01g0827700	LOC_Os01g61200.1				GO:0016298 - lipase activity, GO:0006629 - lipid metabolic process		
10977	GELP27	OsGELP27	GDSL ESTERASE/LIPASE PROTEIN 27	GDSL esterase/lipase protein 27	GDSL ESTERASE/LIPASE PROTEIN 27		1		 Biochemical character	Os01g0832100	LOC_Os01g61570.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10978	GELP28	OsGELP28	GDSL ESTERASE/LIPASE PROTEIN 28	GDSL esterase/lipase protein 28	GDSL ESTERASE/LIPASE PROTEIN 28		1		 Biochemical character	Os01g0958600	LOC_Os01g72850.1						
10979	GELP29	OsGELP29	GDSL ESTERASE/LIPASE PROTEIN 29	GDSL esterase/lipase protein 29	GDSL ESTERASE/LIPASE PROTEIN 29		2		 Biochemical character	Os02g0101400	LOC_Os02g01140.1				GO:0005576 - extracellular region, GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10980	GELP30	OsGELP30	GDSL ESTERASE/LIPASE PROTEIN 30	GDSL esterase/lipase protein 30	GDSL ESTERASE/LIPASE PROTEIN 30		2		 Biochemical character	Os02g0110000	LOC_Os02g01980.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10981	GELP31	OsGELP31	GDSL ESTERASE/LIPASE PROTEIN 31	GDSL esterase/lipase protein 31	GDSL ESTERASE/LIPASE PROTEIN 31		2		 Biochemical character	Os02g0189200	LOC_Os02g09610.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10982	GELP32	OsGELP32	GDSL ESTERASE/LIPASE PROTEIN 32	GDSL esterase/lipase protein 32	GDSL ESTERASE/LIPASE PROTEIN 32		2		 Biochemical character	Os02g0189300	LOC_Os02g09620.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10983	GELP33	OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c	GDSL ESTERASE/LIPASE PROTEIN 33	GDSL esterase/lipase protein 33	GDSL ESTERASE/LIPASE PROTEIN 33		2		 Biochemical character	Os02g0250400	LOC_Os02g15230.1, LOC_Os02g15230.2, LOC_Os02g15230.3				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10984	RMS2	OsGELP34, GELP34, OsRMS2	RICE MALE STERILE 2	GDSL esterase/lipase protein 34, rice male sterile2	GDSL ESTERASE/LIPASE PROTEIN 34	rms2, osgelp34	2		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0290900	LOC_Os02g18870.1				GO:0010584 - pollen exine formation, GO:0048653 - anther development, GO:0009555 - pollen development, GO:0006629 - lipid metabolic process, GO:0042335 - cuticle development, GO:0005783 - endoplasmic reticulum, GO:0055088 - lipid homeostasis, GO:0016788 - hydrolase activity, acting on ester bonds	TO:0000437 - male sterility	PO:0025281 - pollen , PO:0009066 - anther , PO:0001004 - anther development stage 
10985	GELP35	OsGELP35	GDSL ESTERASE/LIPASE PROTEIN 35	GDSL esterase/lipase protein 35	GDSL ESTERASE/LIPASE PROTEIN 35		2		 Biochemical character	Os02g0291600	LOC_Os02g18954.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10986	GELP36	OsGELP36	GDSL ESTERASE/LIPASE PROTEIN 36	GDSL esterase/lipase protein 36	GDSL ESTERASE/LIPASE PROTEIN 36		2	LOC_Os02g18990.	 Biochemical character		LOC_Os02g18990				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10987	GELP37	OsGELP37	GDSL ESTERASE/LIPASE PROTEIN 37	GDSL esterase/lipase protein 37	GDSL ESTERASE/LIPASE PROTEIN 37		2		 Biochemical character	Os02g0292600	LOC_Os02g19040.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10988	GELP38	OsGELP38	GDSL ESTERASE/LIPASE PROTEIN 38	GDSL esterase/lipase protein 38	GDSL ESTERASE/LIPASE PROTEIN 38		2		 Biochemical character	Os02g0604000	LOC_Os02g39170.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10989	GELP39	OsGELP39	GDSL ESTERASE/LIPASE PROTEIN 39	GDSL esterase/lipase protein 39	GDSL ESTERASE/LIPASE PROTEIN 39		2		 Biochemical character	Os02g0608801	LOC_Os02g39590.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10990	GELP40	OsGELP40	GDSL ESTERASE/LIPASE PROTEIN 40	GDSL esterase/lipase protein 40	GDSL ESTERASE/LIPASE PROTEIN 40		2		 Biochemical character	Os02g0617400	LOC_Os02g40440.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10991	GELP41	OsGELP41	GDSL ESTERASE/LIPASE PROTEIN 41	GDSL esterase/lipase protein 41	GDSL ESTERASE/LIPASE PROTEIN 41		2		 Biochemical character	Os02g0668900	LOC_Os02g44850.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10992	GELP42	OsGELP42	GDSL ESTERASE/LIPASE PROTEIN 42	GDSL esterase/lipase protein 42	GDSL ESTERASE/LIPASE PROTEIN 42		2		 Biochemical character	Os02g0669000	LOC_Os02g44860.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10993	GELP43	OsGELP43	GDSL ESTERASE/LIPASE PROTEIN 43	GDSL esterase/lipase protein 43	GDSL ESTERASE/LIPASE PROTEIN 43		2		 Biochemical character	Os02g0732800	LOC_Os02g50000.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10994	GELP44	OsGELP44, OsGELP44a, OsGELP44b	GDSL ESTERASE/LIPASE PROTEIN 44	GDSL esterase/lipase protein 44	GDSL ESTERASE/LIPASE PROTEIN 44		2		 Biochemical character	Os02g0740400	LOC_Os02g50690.1, LOC_Os02g50690.2				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
10995	GELP45	OsGELP45, OsGELP45a, OsGELP45b	GDSL ESTERASE/LIPASE PROTEIN 45	GDSL esterase/lipase protein 45	GDSL ESTERASE/LIPASE PROTEIN 45		2	GDSL-like lipase/acylhydrolase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0816200	LOC_Os02g57110.1, LOC_Os02g57110.2				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0009066 - anther 
10996	GELP46	OsGELP46, OsGELP46a, OsGELP46b	GDSL ESTERASE/LIPASE PROTEIN 46	GDSL esterase/lipase protein 46	GDSL ESTERASE/LIPASE PROTEIN 46		3		 Biochemical character	Os03g0310000	LOC_Os03g19670.1, LOC_Os03g19670.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10997	GELP47	OsGELP47	GDSL ESTERASE/LIPASE PROTEIN 47	GDSL esterase/lipase protein 47	GDSL ESTERASE/LIPASE PROTEIN 47		3		 Biochemical character	Os03g0365000	LOC_Os03g24960.1, LOC_Os03g25000.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10998	GELP48	OsGELP48	GDSL ESTERASE/LIPASE PROTEIN 48	GDSL esterase/lipase protein 48	GDSL ESTERASE/LIPASE PROTEIN 48		3	LOC_Os03g25010. 	 Biochemical character	Os03g0365475	LOC_Os03g25010.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
10999	GELP49	OsGELP49, HTA1, OsHTA1	GDSL ESTERASE/LIPASE PROTEIN 49	GDSL esterase/lipase protein 49	GDSL ESTERASE/LIPASE PROTEIN 49	hta1, hta1-1, hta1-2	3	GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0365800	LOC_Os03g25030.1				GO:0009408 - response to heat, GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds	TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance	
11000	GELP50	OsGELP50, OsGELP50a, OsGELP50b	GDSL ESTERASE/LIPASE PROTEIN 50	GDSL esterase/lipase protein 50	GDSL ESTERASE/LIPASE PROTEIN 50		3		 Biochemical character	Os03g0365900	LOC_Os03g25040.1, LOC_Os03g25040.2				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11001	GELP51	OsGELP51	GDSL ESTERASE/LIPASE PROTEIN 51	GDSL esterase/lipase protein 51	GDSL ESTERASE/LIPASE PROTEIN 51		3		 Biochemical character	Os03g0580800	LOC_Os03g38390.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11002	GELP52	OsGELP52	GDSL ESTERASE/LIPASE PROTEIN 52	GDSL esterase/lipase protein 52	GDSL ESTERASE/LIPASE PROTEIN 52		3		 Biochemical character	Os03g0581400	LOC_Os03g38470.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11003	GELP53	OsGELP53	GDSL ESTERASE/LIPASE PROTEIN 53	GDSL esterase/lipase protein 53	GDSL ESTERASE/LIPASE PROTEIN 53		3		 Biochemical character	Os03g0683800	LOC_Os03g47940.1				GO:0016298 - lipase activity, GO:0006629 - lipid metabolic process		
11004	GELP54	OsGELP54	GDSL ESTERASE/LIPASE PROTEIN 54	GDSL esterase/lipase protein 54	GDSL ESTERASE/LIPASE PROTEIN 54		3		 Biochemical character	Os03g0844600	LOC_Os03g62740.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11005	GELP55	OsGELP55, OsGELP55a, OsGELP55b	GDSL ESTERASE/LIPASE PROTEIN 55	GDSL esterase/lipase protein 55	GDSL ESTERASE/LIPASE PROTEIN 55		3		 Biochemical character	Os03g0859100	LOC_Os03g64170.1, LOC_Os03g64170.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005576 - extracellular region, GO:0006629 - lipid metabolic process		
11006	GELP56	OsGELP56	GDSL ESTERASE/LIPASE PROTEIN 56	GDSL esterase/lipase protein 56	GDSL ESTERASE/LIPASE PROTEIN 56		4		 Biochemical character	Os04g0507700	LOC_Os04g42860.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11007	GELP57	OsGELP57	GDSL ESTERASE/LIPASE PROTEIN 57	GDSL esterase/lipase protein 57	GDSL ESTERASE/LIPASE PROTEIN 57		4		 Biochemical character	Os04g0561800	LOC_Os04g47390.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11008	GELP58	OsGELP58, OsGELP58a, OsGELP58b, OsGELP58c, OsGELP58d	GDSL ESTERASE/LIPASE PROTEIN 58	GDSL esterase/lipase protein 58	GDSL ESTERASE/LIPASE PROTEIN 58		4		 Biochemical character	Os04g0577300	LOC_Os04g48800.1, LOC_Os04g48800.2, LOC_Os04g48800.3, LOC_Os04g48800.4				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11009	GELP59	OsGELP59, RMP7	GDSL ESTERASE/LIPASE PROTEIN 59	GDSL esterase/lipase protein 59, rice microspore-preferred 7	GDSL ESTERASE/LIPASE PROTEIN 59		4	LOC_Os04g55660.	 Biochemical character	Os04g0650200	LOC_Os04g55660.1				GO:0009556 - microsporogenesis, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		PO:0001007 - pollen development stage 
11010	GELP60	OsGELP60	GDSL ESTERASE/LIPASE PROTEIN 60	GDSL esterase/lipase protein 60	GDSL ESTERASE/LIPASE PROTEIN 60		5		 Biochemical character	Os05g0133401	LOC_Os05g04240.1				GO:0009570 - chloroplast stroma, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11011	GELP61	OsGELP61	GDSL ESTERASE/LIPASE PROTEIN 61	GDSL esterase/lipase protein 61	GDSL ESTERASE/LIPASE PROTEIN 61		5		 Biochemical character	Os05g0159200	LOC_Os05g06710.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11012	GELP62	OsGELP62, OsGELP62a, OsGELP62b, OsGELP62c, DARX1, OsDARX1	GDSL ESTERASE/LIPASE PROTEIN 62	GDSL esterase/lipase protein 62, DEACETYLASE ON ARABINOSYL SIDECHAIN OF XYLAN1	GDSL ESTERASE/LIPASE PROTEIN 62	darx1, darx1-1	5	TO:0000748: leaf morphology trait. TO:0000993: cellulose content.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Biochemical character	Os05g0159300	LOC_Os05g06720.3, LOC_Os05g06720.2, LOC_Os05g06720.1				GO:0016787 - hydrolase activity, GO:0005794 - Golgi apparatus, GO:0009834 - secondary cell wall biogenesis	TO:0000051 - stem strength, TO:0000207 - plant height	
11013	GELP63	OsGELP63	GDSL ESTERASE/LIPASE PROTEIN 63	GDSL esterase/lipase protein 63	GDSL ESTERASE/LIPASE PROTEIN 63		5		 Biochemical character	Os05g0209600	LOC_Os05g11910.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11014	GELP64	OsGELP64, OsGELP64a, OsGELP64b, MHZ11, OsMHZ11	GDSL ESTERASE/LIPASE PROTEIN 64	GDSL esterase/lipase protein 64, mao huzi 11	GDSL ESTERASE/LIPASE PROTEIN 64	mhz11	5	"mhz (mao huzi), meaning \"cat whiskers\" based on the appearance of their roots (Zhao et al. 2020). GO:2000280: regulation of root development. GO:0106118: regulation of sterol biosynthetic process."	 Biochemical character,  Vegetative organ - Root	Os05g0210100	LOC_Os05g11950.2, LOC_Os05g11950.1				GO:0005789 - endoplasmic reticulum membrane, GO:0019216 - regulation of lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process, GO:0016126 - sterol biosynthetic process, GO:0055092 - sterol homeostasis, GO:0009723 - response to ethylene stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0048364 - root development, GO:0009727 - detection of ethylene stimulus	TO:0000173 - ethylene sensitivity	
11015	GELP65	OsGELP65	GDSL ESTERASE/LIPASE PROTEIN 65	GDSL esterase/lipase protein 65	GDSL ESTERASE/LIPASE PROTEIN 65		5		 Biochemical character	Os05g0210400	LOC_Os05g11970.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11016	GELP66	OsGELP66	GDSL ESTERASE/LIPASE PROTEIN 66	GDSL esterase/lipase protein 66	GDSL ESTERASE/LIPASE PROTEIN 66		5		 Biochemical character	Os05g0401000	LOC_Os05g33270.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11017	GELP67	OsGELP67, OsGELP67a, OsGELP67b	GDSL ESTERASE/LIPASE PROTEIN 67	GDSL esterase/lipase protein 67	GDSL ESTERASE/LIPASE PROTEIN 67		5		 Biochemical character	Os05g0419800	LOC_Os05g34700.1, LOC_Os05g34700.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11018	GELP68	OsGELP68	GDSL ESTERASE/LIPASE PROTEIN 68	GDSL esterase/lipase protein 68	GDSL ESTERASE/LIPASE PROTEIN 68		5		 Biochemical character	Os05g0468500	LOC_Os05g39220.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11019	GELP69	OsGELP69	GDSL ESTERASE/LIPASE PROTEIN 69	GDSL esterase/lipase protein 69	GDSL ESTERASE/LIPASE PROTEIN 69		5		 Biochemical character	Os05g0506500	LOC_Os05g43090.1				GO:0016787 - hydrolase activity		
11020	GELP70	OsGELP70	GDSL ESTERASE/LIPASE PROTEIN 70	GDSL esterase/lipase protein 70	GDSL ESTERASE/LIPASE PROTEIN 70		5		 Biochemical character	Os05g0506600	LOC_Os05g43100.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11021	GELP71	OsGELP71	GDSL ESTERASE/LIPASE PROTEIN 71	GDSL esterase/lipase protein 71	GDSL ESTERASE/LIPASE PROTEIN 71		5		 Biochemical character	Os05g0506700	LOC_Os05g43110.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11022	GELP72	OsGELP72	GDSL ESTERASE/LIPASE PROTEIN 72	GDSL esterase/lipase protein 72	GDSL ESTERASE/LIPASE PROTEIN 72		5		 Biochemical character	Os05g0506800	LOC_Os05g43120.1				GO:0016787 - hydrolase activity		
11023	GELP73	OsGELP73	GDSL ESTERASE/LIPASE PROTEIN 73	GDSL esterase/lipase protein 73	GDSL ESTERASE/LIPASE PROTEIN 73		5		 Biochemical character	Os05g0518300	LOC_Os05g44200.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11024	GELP74	OsGELP74	GDSL ESTERASE/LIPASE PROTEIN 74	GDSL esterase/lipase protein 74	GDSL ESTERASE/LIPASE PROTEIN 74		6		 Biochemical character	Os06g0148200	LOC_Os06g05550.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0048046 - apoplast, GO:0006629 - lipid metabolic process		
11025	GELP75	OsGELP75, OsGELP75a, OsGELP75b, OsGELP75c	GDSL ESTERASE/LIPASE PROTEIN 75	GDSL esterase/lipase protein 75	GDSL ESTERASE/LIPASE PROTEIN 75		6		 Biochemical character	Os06g0149100	LOC_Os06g05630.1, LOC_Os06g05630.2, LOC_Os06g05630.3				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11026	GELP76	OsGELP76	GDSL ESTERASE/LIPASE PROTEIN 76	GDSL esterase/lipase protein 76	GDSL ESTERASE/LIPASE PROTEIN 76		6		 Biochemical character	Os06g0156400	LOC_Os06g06230.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11027	GELP77	OsGELP77, OsGELP77a, OsGELP77b	GDSL ESTERASE/LIPASE PROTEIN 77	GDSL esterase/lipase protein 77	GDSL ESTERASE/LIPASE PROTEIN 77	osgelp77, osgelp77-1, osgelp77-2	6	GDSL-like lipase/acylhydrolase. PO:0030123: panicle inflorescence.	 Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os06g0156600	LOC_Os06g06250.1, LOC_Os06g06250.2				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0080140 - regulation of jasmonic acid metabolic process, GO:0009408 - response to heat, GO:0006629 - lipid metabolic process, GO:0050832 - defense response to fungus, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0042742 - defense response to bacterium, GO:0005783 - endoplasmic reticulum, GO:0009753 - response to jasmonic acid stimulus	TO:0000449 - grain yield per plant, TO:0000175 - bacterial blight disease resistance, TO:0000346 - tiller number, TO:0000382 - 1000-seed weight, TO:0000259 - heat tolerance, TO:0000152 - panicle number, TO:0000455 - seed set percent, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0000604 - fat and essential oil content, TO:0000396 - grain yield, TO:0002668 - jasmonic acid content, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000203 - bacterial leaf streak disease resistance	PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0020142 - stem internode , PO:0020141 - stem node , PO:0009005 - root , PO:0009066 - anther 
11028	GELP78	OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2	GDSL ESTERASE/LIPASE PROTEIN 78	GDSL esterase/lipase protein 78, endosperm-specific gene 82, GDSL lipase 2	GDSL ESTERASE/LIPASE PROTEIN 78		6	LOC_Os06g06260. GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0156700	LOC_Os06g06260.1				GO:0055088 - lipid homeostasis, GO:0050832 - defense response to fungus, GO:0006629 - lipid metabolic process, GO:0016298 - lipase activity, GO:0009751 - response to salicylic acid stimulus, GO:0019216 - regulation of lipid metabolic process, GO:0005811 - lipid particle, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0005789 - endoplasmic reticulum membrane	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0020142 - stem internode , PO:0020141 - stem node 
11029	GELP79	OsGELP79	GDSL ESTERASE/LIPASE PROTEIN 79	GDSL esterase/lipase protein 79	GDSL ESTERASE/LIPASE PROTEIN 79		6		 Biochemical character	Os06g0157000	LOC_Os06g06290.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11030	GELP80	OsGELP80	GDSL ESTERASE/LIPASE PROTEIN 80	GDSL esterase/lipase protein 80	GDSL ESTERASE/LIPASE PROTEIN 80		6		 Biochemical character	Os06g0160200	LOC_Os06g06520.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11031	GELP81	OsGELP81	GDSL ESTERASE/LIPASE PROTEIN 81	GDSL esterase/lipase protein 81	GDSL ESTERASE/LIPASE PROTEIN 81		6	OsGDSL (GDSL-like lipase/acylhydrolase) in Mirdar et al. 2019.	 Biochemical character	Os06g0229400	LOC_Os06g12410.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11032	GELP82	OsGELP82	GDSL ESTERASE/LIPASE PROTEIN 82	GDSL esterase/lipase protein 82	GDSL ESTERASE/LIPASE PROTEIN 82		6		 Biochemical character	Os06g0257600	LOC_Os06g14630.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11033	GELP83	OsGELP83, OsGELP83a, OsGELP83b	GDSL ESTERASE/LIPASE PROTEIN 83	GDSL esterase/lipase protein 83	GDSL ESTERASE/LIPASE PROTEIN 83		6		 Biochemical character	Os06g0351500	LOC_Os06g24404.1, LOC_Os06g24404.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005576 - extracellular region, GO:0006629 - lipid metabolic process		
11034	GELP84	OsGELP84	GDSL ESTERASE/LIPASE PROTEIN 84	GDSL esterase/lipase protein 84	GDSL ESTERASE/LIPASE PROTEIN 84		6		 Biochemical character	Os06g0531600	LOC_Os06g34070.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11035	GELP85	OsGELP85	GDSL ESTERASE/LIPASE PROTEIN 85	GDSL esterase/lipase protein 85	GDSL ESTERASE/LIPASE PROTEIN 85		6		 Biochemical character	Os06g0531900	LOC_Os06g34120.1				GO:0006629 - lipid metabolic process, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0016788 - hydrolase activity, acting on ester bonds		
11036	GELP86	OsGELP86	GDSL ESTERASE/LIPASE PROTEIN 86	GDSL esterase/lipase protein 86	GDSL ESTERASE/LIPASE PROTEIN 86		6		 Biochemical character	Os06g0560700	LOC_Os06g36520.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11037	GELP87	OsGELP87	GDSL ESTERASE/LIPASE PROTEIN 87	GDSL esterase/lipase protein 87	GDSL ESTERASE/LIPASE PROTEIN 87		6		 Biochemical character	Os06g0636700	LOC_Os06g43044.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11038	GELP88	OsGELP88	GDSL ESTERASE/LIPASE PROTEIN 88	GDSL esterase/lipase protein 88	GDSL ESTERASE/LIPASE PROTEIN 88		6		 Biochemical character	Os06g0694200	LOC_Os06g47910.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11039	GELP89	OsGELP89	GDSL ESTERASE/LIPASE PROTEIN 89	GDSL esterase/lipase protein 89	GDSL ESTERASE/LIPASE PROTEIN 89		6		 Biochemical character	Os06g0725100	LOC_Os06g50940.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11040	GELP90	OsGELP90	GDSL ESTERASE/LIPASE PROTEIN 90	GDSL esterase/lipase protein 90	GDSL ESTERASE/LIPASE PROTEIN 90		6		 Biochemical character	Os06g0725200	LOC_Os06g50950.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11041	GELP91	OsGELP91	GDSL ESTERASE/LIPASE PROTEIN 91	GDSL esterase/lipase protein 91	GDSL ESTERASE/LIPASE PROTEIN 91		7		 Biochemical character	Os07g0586100	LOC_Os07g39740.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009505 - plant-type cell wall, GO:0004560 - alpha-L-fucosidase activity		
11042	GELP92	OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE	GDSL ESTERASE/LIPASE PROTEIN 92	GDSL esterase/lipase protein 92, acetylcholinesterase	GDSL ESTERASE/LIPASE PROTEIN 92		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0586200	LOC_Os07g39750.1, LOC_Os07g39750.2, LOC_Os07g39750.3				GO:0009505 - plant-type cell wall, GO:0004560 - alpha-L-fucosidase activity, GO:0006629 - lipid metabolic process, GO:0009629 - response to gravity, GO:0009630 - gravitropism, GO:0016788 - hydrolase activity, acting on ester bonds	TO:0002693 - gravity response trait	
11043	GELP93	OsGELP93	GDSL ESTERASE/LIPASE PROTEIN 93	GDSL esterase/lipase protein 93	GDSL ESTERASE/LIPASE PROTEIN 93		7		 Biochemical character	Os07g0642200	LOC_Os07g44780.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11044	GELP94	OsGELP94, OsGELP94a, OsGELP94b	GDSL ESTERASE/LIPASE PROTEIN 94	GDSL esterase/lipase protein 94	GDSL ESTERASE/LIPASE PROTEIN 94		7		 Biochemical character	Os07g0668300	LOC_Os07g47210.1, LOC_Os07g47210.2				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11045	GELP95	OsGELP95	GDSL ESTERASE/LIPASE PROTEIN 95	GDSL esterase/lipase protein 95	GDSL ESTERASE/LIPASE PROTEIN 95		8		 Biochemical character	Os08g0112900	LOC_Os08g02094.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11046	GELP96	OsGELP96, OsGELP96a, OsGELP96b	GDSL ESTERASE/LIPASE PROTEIN 96	GDSL esterase/lipase protein 96	GDSL ESTERASE/LIPASE PROTEIN 96		8		 Biochemical character	Os08g0565900	LOC_Os08g45150.1, LOC_Os08g45150.2				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11047	GELP97	OsGELP97, OsGELP97a, OsGELP97b	GDSL ESTERASE/LIPASE PROTEIN 97	GDSL esterase/lipase protein 97	GDSL ESTERASE/LIPASE PROTEIN 97		9		 Biochemical character	Os09g0132200	LOC_Os09g04624.1, LOC_Os09g04624.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11048	GELP98	OsGELP98, OsGELP98a, OsGELP98b	GDSL ESTERASE/LIPASE PROTEIN 98	GDSL esterase/lipase protein 98	GDSL ESTERASE/LIPASE PROTEIN 98		9		 Biochemical character	Os09g0132900	LOC_Os09g04710.1, LOC_Os09g04710.2				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11049	GELP99	OsGELP99	GDSL ESTERASE/LIPASE PROTEIN 99	GDSL esterase/lipase protein 99	GDSL ESTERASE/LIPASE PROTEIN 99		9		 Biochemical character	Os09g0247600	LOC_Os09g07290.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11050	GELP100	OsGELP100, OsGELP100a, OsGELP100b	GDSL ESTERASE/LIPASE PROTEIN 100	GDSL esterase/lipase protein 100	GDSL ESTERASE/LIPASE PROTEIN 100		9		 Biochemical character	Os09g0540400	LOC_Os09g36880.1, LOC_Os09g36880.2				GO:0006629 - lipid metabolic process, GO:0005576 - extracellular region, GO:0016298 - lipase activity		
11051	GELP101	OsGELP101	GDSL ESTERASE/LIPASE PROTEIN 101	GDSL esterase/lipase protein 101	GDSL ESTERASE/LIPASE PROTEIN 101		9		 Biochemical character	Os09g0567800	LOC_Os09g39430.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11052	GELP102	OsGELP102	GDSL ESTERASE/LIPASE PROTEIN 102	GDSL esterase/lipase protein 102	GDSL ESTERASE/LIPASE PROTEIN 102		10		 Biochemical character	Os10g0140300	LOC_Os10g05088.1				GO:0006629 - lipid metabolic process, GO:0016298 - lipase activity		
11053	GELP103	OsGELP103	GDSL ESTERASE/LIPASE PROTEIN 103	GDSL esterase/lipase protein 103	GDSL ESTERASE/LIPASE PROTEIN 103		10		 Biochemical character	Os10g0392800/Os10g0392900	LOC_Os10g25340.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11054	GELP104	OsGELP104	GDSL ESTERASE/LIPASE PROTEIN 104	GDSL esterase/lipase protein 104	GDSL ESTERASE/LIPASE PROTEIN 104		10		 Biochemical character	Os10g0393600/Os10g0393700	LOC_Os10g25380.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11055	GELP105	OsGELP105	GDSL ESTERASE/LIPASE PROTEIN 105	GDSL esterase/lipase protein 105	GDSL ESTERASE/LIPASE PROTEIN 105		10		 Biochemical character	Os10g0393800	LOC_Os10g25400.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11056	GELP106	OsGELP106	GDSL ESTERASE/LIPASE PROTEIN 106	GDSL esterase/lipase protein 106	GDSL ESTERASE/LIPASE PROTEIN 106		10		 Biochemical character	Os10g0394000	LOC_Os10g25420.1				GO:0016787 - hydrolase activity		
11057	GELP107	OsGELP107	GDSL ESTERASE/LIPASE PROTEIN 107	GDSL esterase/lipase protein 107	GDSL ESTERASE/LIPASE PROTEIN 107		10		 Biochemical character	Os10g0438600	LOC_Os10g30290.1				GO:0006629 - lipid metabolic process, GO:0005576 - extracellular region, GO:0016298 - lipase activity		
11058	GELP108	OsGELP108	GDSL ESTERASE/LIPASE PROTEIN 108	GDSL esterase/lipase protein 108	GDSL ESTERASE/LIPASE PROTEIN 108		10		 Biochemical character	Os10g0463200	LOC_Os10g32580.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11059	GELP109	OsGELP109	GDSL ESTERASE/LIPASE PROTEIN 109	GDSL esterase/lipase protein 109	GDSL ESTERASE/LIPASE PROTEIN 109		10		 Biochemical character	Os10g0476700	LOC_Os10g33690.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11060	GELP110	OsGELP110	GDSL ESTERASE/LIPASE PROTEIN 110	GDSL esterase/lipase protein 110	GDSL ESTERASE/LIPASE PROTEIN 110	osgelp110	11		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0129500	LOC_Os11g03520.1				GO:0009555 - pollen development, GO:0016787 - hydrolase activity, GO:0080110 - sporopollenin biosynthetic process, GO:0005777 - peroxisome, GO:0007127 - meiosis I, GO:0010584 - pollen exine formation	TO:0000437 - male sterility	PO:0009066 - anther 
11061	GELP111	OsGELP111	GDSL ESTERASE/LIPASE PROTEIN 111	GDSL esterase/lipase protein 111	GDSL ESTERASE/LIPASE PROTEIN 111		11		 Biochemical character	Os11g0521000	LOC_Os11g31940.1				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11062	GELP112	OsGELP112, WDL1	GDSL ESTERASE/LIPASE PROTEIN 112	GDSL esterase/lipase protein 112, wilted dwarf and lethal 1	GDSL ESTERASE/LIPASE PROTEIN 112	wdl1	11	LOC_Os11g48070. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character	Os11g0708400	LOC_Os11g48070.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process	TO:0000709 - leaf gloss	
11063	GELP113	OsGELP113	GDSL ESTERASE/LIPASE PROTEIN 113	GDSL esterase/lipase protein 113	GDSL ESTERASE/LIPASE PROTEIN 113		12		 Biochemical character	Os12g0274200	LOC_Os12g17570.1				GO:0016788 - hydrolase activity, acting on ester bonds, GO:0006629 - lipid metabolic process		
11064	GELP114	OsGELP114, OsGELP114a, OsGELP114b	GDSL ESTERASE/LIPASE PROTEIN 114	GDSL esterase/lipase protein 114	GDSL ESTERASE/LIPASE PROTEIN 114		12		 Biochemical character	Os12g0566700	LOC_Os12g37910.1, LOC_Os12g37910.2				GO:0006629 - lipid metabolic process, GO:0016788 - hydrolase activity, acting on ester bonds		
11065	FBOX516	OsFbx352, OsFbox516, Fbx352, Fbox516, Os_F0046, OsFBX352, FBX352	F-BOX PROTEIN 516	F-box gene 352, F-box domain protein 352, F-box protein 516, F-box-type E3 ubiquitin ligase X352	F-BOX PROTEIN 516		10	OsFbx352 in Song et al. 2012, Li et al. 2024. Os_F0046 in Hua et al. 2011.	 Character as QTL - Grain quality,  Seed - Physiological traits - Longevity,  Tolerance and resistance - Stress tolerance,  Other	Os10g0127900	LOC_Os10g03850.5, LOC_Os10g03850.1, LOC_Os10g03850.2, LOC_Os10g03850.3, LOC_Os10g03850.4				GO:0009408 - response to heat, GO:0009270 - response to humidity	TO:0000345 - seed viability, TO:0000259 - heat tolerance, TO:0000435 - seed longevity, TO:0000250 - vigor related trait, TO:0010001 - percent germination, TO:0000441 - humidity related trait	
11066	_	MAIF1, OsFbox104, Os_F0528, OsFBDUF13, FBDUF13	_	miRNAs regulated and abiotic stress induced F-box gene 1, F-box protein 104, F-box-type E3 ubiquitin ligase FBDUF13			2	LOC_Os02g44990. Os_F0528 in Hua et al. 2011.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0671100	LOC_Os02g44990.1						
11067	_	OsDRF1, OsFbox209, Os_F0001, OsFBX133, FBX133	_	defense-related F-box protein 1, F-box protein 209, F-box-type E3 ubiquitin ligase X133			4	DQ237916. LOC_Os04g35190. Os_F0001 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0431200	LOC_Os04g35190.1				GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0006417 - regulation of translation, GO:0009408 - response to heat, GO:0005739 - mitochondrion		
11068	USP1	OsUsp1, OsUSP31, USP31	UNIVERSAL STRESS PROTEIN 1	universal stress protein 1, universal stress protein 31	UNIVERSAL STRESS PROTEIN 1		7	AF491815. OsUSP31 in Arabia et al. 2021.	 Tolerance and resistance - Stress tolerance	Os07g0673400	LOC_Os07g47620.1				GO:0009413 - response to flooding, GO:0006950 - response to stress	TO:0000524 - submergence tolerance	PO:0009005 - root , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0025034 - leaf 
11069	SIP2	Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1	SUBMERGENCE-INDUCED PROTEIN 2	submergence-induced protein 2, submergence-induced protein2, acireductone dioxygenase 1	SUBMERGENCE-INDUCED PROTEIN 2		10	AF050200. C28663, BR000389. A2Z7C4. A1L4T4. TO:0006066: leaf trichome density.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Biochemical character	Os10g0419400	LOC_Os10g28350.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0019509 - methionine salvage, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0046872 - metal ion binding, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0009723 - response to ethylene stimulus, GO:0010365 - positive regulation of ethylene biosynthetic process, GO:0010150 - leaf senescence, GO:0009611 - response to wounding, GO:0034059 - response to anoxia, GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity	TO:0000566 - stomatal frequency, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance, TO:0000136 - relative water content, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000131 - leaf water potential, TO:0000163 - auxin sensitivity, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
11070	_	OsRab1A2	_	small GTP-binding protein OsRab1A2				AK060839.									
11071	_	OsRab1B1	_	small GTP-binding protein OsRab1B1				AK062838.									
11072	_	OsRab1B2, OsRas1	_	small GTP-binding protein OsRab1B2, Ras related protein 1			1	P40392. an OsHIR1-interacting protein. D15451. Transforming protein (ypt1) in Sasaki et al. 1994. a Ras- related RIC1.		Os01g0558600	LOC_Os01g37800.1				GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction		
11073	_	OsRab1C1	_	small GTP-binding protein OsRab1C1, GTP-binding protein OsRab1			1	D22939. OsRab1 in Sasaki et al. 1994.		Os01g0179700	LOC_Os01g08450.1				GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction		
11074	_	OsRab1C3, OsRab1	_	small GTP-binding protein OsRab1C3			2	OsRab1 in Rho et al. 2009.		Os02g0653800	LOC_Os02g43690.3				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0015031 - protein transport		
11075	_	OsRab2A1, OsRab2	_	small GTP-binding protein OsRab2A1			4	OsRab2 in Rho et al. 2009.		Os04g0470100	LOC_Os04g39440.1, LOC_Os04g39440.2, LOC_Os04g39440.3, LOC_Os04g39440.4				GO:0005773 - vacuole, GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction		
11076	RAB2A2	OsRab2A2, Rab2B	_	small GTP-binding protein OsRab2A2, Ras-related G protein Rab-2-B			2	Ras-related G protein Rab-2-B in Luo et al. 2022.		Os02g0586400	LOC_Os02g37420.1				GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005773 - vacuole, GO:0005525 - GTP binding		
11077	_	OsRab2B1	_	small GTP-binding protein OsRab2B1			10	Os10g0208800 (in Rap1 (build3)).									
11078	_	OsRab5A1, OsRab5b, Rab5b	_	small GTP-binding protein OsRab5A1			3	OsRab5b in Rho et al. 2009, Wen et al. 2015. a plant-specific Rab5.		Os03g0151900	LOC_Os03g05740.1				GO:0010009 - external side of endosome membrane, GO:0045022 - early endosome to late endosome transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005769 - early endosome, GO:0005525 - GTP binding, GO:0015031 - protein transport		
11079	_	OsRab5A2, Rab5A2	_	small GTP-binding protein OsRab5A2			10			Os10g0441800	LOC_Os10g30520.1				GO:0007264 - small GTPase mediated signal transduction, GO:0010009 - external side of endosome membrane, GO:0015031 - protein transport, GO:0045022 - early endosome to late endosome transport, GO:0005525 - GTP binding, GO:0005769 - early endosome		
11080	_	OsRab5B1, Rab5c, OsRab5c	_	small GTP-binding protein OsRab5B1			3	Rab5c in Wen et al. 2015.		Os03g0666500	LOC_Os03g46390.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane, GO:0005768 - endosome, GO:0015031 - protein transport, GO:0005525 - GTP binding		
11082	_	OsRab5C1	_	small GTP-binding protein OsRab5C1			6			Os06g0687100	LOC_Os06g47260.1, LOC_Os06g47260.2				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		
11083	_	OsRab5D1	_	small GTP-binding protein OsRab5D1			5			Os05g0341600	LOC_Os05g27530.1, LOC_Os05g27530.2				GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction		
11084	_	OsRab6A1, Rab6A1	_	small GTP-binding protein OsRab6A1			7	LOC_Os07g31370.1 Ras-related protein.		Os07g0496000	LOC_Os07g31370.1				GO:0032940 - secretion by cell, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005886 - plasma membrane		PO:0009005 - root 
11085	_	OsRab6B2, Rab6B2, OsRab6a, Rab6a	_	small GTP-binding protein OsRab6B2			3	OsRab6a in Yang and Zhang 2016, Yang et al. 2020. TO:0020103: adventitious root length. TO:0006049: iron concentration. GO:0097286: iron ion import. TO:0020089: iron content trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0191400	LOC_Os03g09140.1, LOC_Os03g09140.2				GO:0055072 - iron ion homeostasis, GO:0010037 - response to carbon dioxide, GO:0048364 - root development, GO:0010106 - cellular response to iron ion starvation, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0040008 - regulation of growth	TO:0000571 - shoot fresh weight, TO:0000396 - grain yield, TO:0000224 - iron sensitivity, TO:0000495 - chlorophyll content, TO:0000227 - root length, TO:0000656 - root development trait, TO:0000457 - total biomass yield, TO:0000207 - plant height, TO:0000578 - root fresh weight	PO:0007520 - root development stage 
11086	RAB7A1	OsRab7A1	_	small GTP-binding protein OsRab7A1			5			Os05g0536900	LOC_Os05g46000.1				GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction		
11087	RAB7A2	OsRab7A2	_	small GTP-binding protein OsRab7A2			1			Os01g0714900	LOC_Os01g51700.1, LOC_Os01g51700.2, LOC_Os01g51700.3				GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction		
11088	RAB7B1	OsRab7B1, Rab7B1, OsRab7	_	small GTP-binding protein OsRab7B1			1			Os01g0227300	LOC_Os01g12730.1, LOC_Os01g12730.2				GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport		
11089	RAB7B2	OsRab7B2	_	small GTP-binding protein OsRab7B2			5			Os05g0445000							
11090	RAB7B3	OsRab7B3, Rab7B3, OsRab7, Rab7	_	small GTP-binding protein OsRab7B3, GTP-binding protein OsRab7			5	a Rice Rab7 Homolog. a Vesicle Trafficking Gene. OsRab7 in Sasaki et al. 1994, Nahm et al. 2003, Peng et al. 2014, El-Esawi and Alayafi 2019, Jan et al. 2023. AY226827. D16050.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0516600	LOC_Os05g44050.1				GO:0005886 - plasma membrane, GO:0016192 - vesicle-mediated transport, GO:0007033 - vacuole organization, GO:0007264 - small GTPase mediated signal transduction, GO:0005774 - vacuolar membrane, GO:0009651 - response to salt stress, GO:0005525 - GTP binding, GO:0030104 - water homeostasis, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0015031 - protein transport, GO:0006979 - response to oxidative stress, GO:0005634 - nucleus	TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000495 - chlorophyll content, TO:0000325 - soluble protein content, TO:0000333 - sugar content, TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000396 - grain yield, TO:0000467 - cell membrane stability	
11091	_	OsRab8A1	_	small GTP-binding protein OsRab8A1			7	AY576526(Homologs of the Os03g0819900 gene).							GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0009873 - ethylene mediated signaling pathway, GO:0005773 - vacuole, GO:0005525 - GTP binding, GO:0005886 - plasma membrane		
11092	RAB8A2	OsRab8A2	_	small GTP-binding protein OsRab8A2			5			Os05g0461300	LOC_Os05g38630.1, LOC_Os05g38630.2				GO:0009873 - ethylene mediated signaling pathway, GO:0005525 - GTP binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport		
11093	_	OsRab8A3	_	small GTP-binding protein OsRab8A3			7	a Ras-related protein. a G-protein signaling component.	 Tolerance and resistance - Stress tolerance	Os07g0239400	LOC_Os07g13530.1, LOC_Os07g13530.2				GO:0015031 - protein transport, GO:0009873 - ethylene mediated signaling pathway, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009411 - response to UV, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction	TO:0000160 - UV light sensitivity	
11094	_	OsRab8A5, OsRab8a	_	small GTP-binding protein OsRab8A5			3			Os03g0819900	LOC_Os03g60530.1, LOC_Os03g60530.3				GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0009873 - ethylene mediated signaling pathway, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005773 - vacuole		
11095	_	OsRab8B1	_	small GTP-binding protein OsRab8B1			7			Os07g0195100	LOC_Os07g09680.1, LOC_Os07g09680.2, LOC_Os07g09680.3				GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction		
11096	_	OsRab11A1	_	small GTP-binding protein OsRab11A1			3			Os03g0843100	LOC_Os03g62600.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0009504 - cell plate, GO:0005886 - plasma membrane, GO:0005768 - endosome, GO:0000910 - cytokinesis, GO:0015031 - protein transport		
11097	RAB11A2	OsRab11A2, Rab11A2, RABA2a, OsRABA2a	_	small GTP-binding protein OsRab11A2			5	RABA2a in Gao et al. 2021.		Os05g0105100	LOC_Os05g01480.1				GO:0005886 - plasma membrane, GO:0005768 - endosome, GO:0009504 - cell plate, GO:0009609 - response to symbiotic bacterium, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0000910 - cytokinesis, GO:0015031 - protein transport		
11098	_	OsRab11B2	_	small GTP-binding protein OsRab11B2			3			Os03g0823700	LOC_Os03g60870.1				GO:0009504 - cell plate, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0005768 - endosome, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction		
11099	RAB11C1	OsRab11C1	RESPONSIVE TO ABA GENE 11C1	small GTP-binding protein OsRab11C1			1	a Candidate Gene for qCTB-1-2 (a QTL for Cold tolerance at the bud burst stage). GO:1902006: negative regulation of proline biosynthetic process.	 Tolerance and resistance - Stress tolerance	Os01g0667600	LOC_Os01g47730.1				GO:0006561 - proline biosynthetic process, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0006002 - proline content	PO:0009005 - root 
11100	_	OsRab11C2	_	small GTP-binding protein OsRab11C2			9			Os09g0327100	LOC_Os09g15790.1				GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0015031 - protein transport		
11101	_	OsRab11C3	_	small GTP-binding protein OsRab11C3			5	a Ras-related protein. a G-protein signaling component.	 Tolerance and resistance - Stress tolerance	Os05g0564400	LOC_Os05g48980.1				GO:0007264 - small GTPase mediated signal transduction, GO:0009411 - response to UV, GO:0005525 - GTP binding, GO:0046686 - response to cadmium ion, GO:0015031 - protein transport	TO:0000160 - UV light sensitivity	
11102	_	OsRab11D1, OsRab11, Rab11, ric2	_	small GTP-binding protein OsRab11D1, ras-related small GTP-binding protein ric2			6	P40393. D13758. D29719.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0551400	LOC_Os06g35814.1				GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005773 - vacuole	TO:0006001 - salt tolerance	
11103	_	OsRab11D2	_	small GTP-binding protein OsRab11D2			1			Os01g0750000	LOC_Os01g54590.1				GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005773 - vacuole, GO:0005525 - GTP binding, GO:0005886 - plasma membrane		
11104	_	OsRab11D3	_	small GTP-binding protein OsRab11D3			5			Os05g0516800	LOC_Os05g44070.1				GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0005773 - vacuole, GO:0007264 - small GTPase mediated signal transduction		
11105	_	OsRab11E1	_	small GTP-binding protein OsRab11E1			10			Os10g0377400	LOC_Os10g23100.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0015031 - protein transport, GO:0032456 - endocytic recycling		
11106	_	OsRab11F1, OsPRA2, PRA2, OsPra2	_	small GTP-binding protein OsRab11F1			6	a small G protein which is homologous with Pea Pra2 protein. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Culm	Os06g0714600	LOC_Os06g50060.1				GO:0009742 - brassinosteroid mediated signaling, GO:0016020 - membrane, GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0009741 - response to brassinosteroid stimulus, GO:0005768 - endosome, GO:0005634 - nucleus, GO:0009504 - cell plate, GO:0005886 - plasma membrane	TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity	PO:0020033 - coleoptile , PO:0009005 - root 
11107	_	OsRab11F2	_	small GTP-binding protein OsRab11F2			9			Os09g0527600	LOC_Os09g35860.1				GO:0005634 - nucleus, GO:0005525 - GTP binding, GO:0005768 - endosome, GO:0007264 - small GTPase mediated signal transduction, GO:0009504 - cell plate, GO:0015031 - protein transport		
11108	_	OsRab11G1	_	small GTP-binding protein OsRab11G1			7			Os07g0634200	LOC_Os07g44040.1				GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0005525 - GTP binding		
11109	_	OsRab11G2	_	small GTP-binding protein OsRab11G2			8			Os08g0525000	LOC_Os08g41340.1				GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0005886 - plasma membrane, GO:0007264 - small GTPase mediated signal transduction		
11110	_	OsRab18A1	_	small GTP-binding protein OsRab18A1				AK111647.									
11111	_	OsRab18B1	_	small GTP-binding protein OsRab18B1			10			Os10g0456600	LOC_Os10g31830.1				GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005777 - peroxisome, GO:0007264 - small GTPase mediated signal transduction		
11112	_	OsRab18B2, Q10RT8	_	small GTP-binding protein OsRab18B2, Ras-related protein RAB-18			3	RAB18 homologous protein. CT830193.		Os03g0146000	LOC_Os03g05280.1				GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005777 - peroxisome, GO:0007264 - small GTPase mediated signal transduction		
11113	VSR3	VSR3, OsVSR3, OsVSR5, VSR5	VACUOLAR SORTING RECEPTOR 3	vacuolar sorting receptor 3, vacuolar sorting receptor 5	VACUOLAR SORTING RECEPTOR 3		7	OsVSR5 in Yang & Jiang 2023.		Os07g0680000	LOC_Os07g48229.1				GO:0006896 - Golgi to vacuole transport, GO:0005509 - calcium ion binding, GO:0009940 - amino-terminal vacuolar sorting propeptide binding, GO:0017119 - Golgi transport complex, GO:0005886 - plasma membrane		
11114	MTI4A	OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b	METALLOTHIONEIN I-4A	Metallothionein 1a, type 1 metallothionein a1, type 1 metallothionein a2, Metallothionein protein OsIDS1	METALLOTHIONEIN I-4A		12	Q0IMG5. BR000392. LOC_Os12g38270. OsMT1b in Wong et al. 2004. OsMT-I-4a in Zhou et al. 2006. OsMT1a in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0570700	LOC_Os12g38270.1, LOC_Os12g38270.2				GO:0030912 - response to deep water, GO:0005634 - nucleus, GO:0005507 - copper ion binding, GO:0010618 - aerenchyma formation, GO:0006950 - response to stress, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait, TO:0000103 - deepwater stress	
11115	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1	METALLOTHIONEIN I-1B	Metallothionein 1b, type 1 metallothionein b, Metallothionein type 1-like protein a	METALLOTHIONEIN I-1B		3	LOC_Os03g17870. Q10N03. TO:0006059: cadmium concentration. OsMT-I-1b in Zhou et al. 2006. OsMT1b in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0288000	LOC_Os03g17870.1				GO:0042542 - response to hydrogen peroxide, GO:0010043 - response to zinc ion, GO:0046687 - response to chromate, GO:0046686 - response to cadmium ion, GO:0005507 - copper ion binding, GO:0046689 - response to mercury ion, GO:0046688 - response to copper ion, GO:0045471 - response to ethanol, GO:0010288 - response to lead ion	TO:0000351 - zinc sensitivity, TO:0000034 - chromium sensitivity, TO:0000021 - copper sensitivity	
11116	MTI4B	OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc	METALLOTHIONEIN I-4B	Metallothionein 1c, type 1 metallothionein c, Metallothionein type 1-like protein c	METALLOTHIONEIN I-4B		12	Q2QNE8. LOC_Os12g38051. OsMT1f in Andres-Borderia et al. 2017. OsMT-I-4b in Zhou et al. 2006. OsMT1c in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0568200	LOC_Os12g38051.1				GO:0046688 - response to copper ion, GO:0005507 - copper ion binding	TO:0000021 - copper sensitivity	
11117	MTI1A	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, MT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1	METALLOTHIONEIN I-1A	Metallothionein 1e, type 1 metallothionein e, rice genomic metallothionein-like gene, metallothionein-like gene-1, rice genomic metallothionein-like gene-1, Metallothionein-like protein 1	METALLOTHIONEIN I-1A		11	A2ZH20, P0C5B3. EU684548. AF017366. U18404. U43529. U46159. BF889443. OsMT1a in Wong et al. 2004. OsMT-I-1a in Zhou et al. 2006. OsMT1e in Kumar et al. 2012.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0704500	LOC_Os11g47809.1				GO:0010288 - response to lead ion, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0030912 - response to deep water, GO:0046687 - response to chromate, GO:0010618 - aerenchyma formation, GO:0005507 - copper ion binding, GO:0010043 - response to zinc ion, GO:0046688 - response to copper ion, GO:0046689 - response to mercury ion	TO:0000103 - deepwater stress, TO:0000074 - blast disease, TO:0000351 - zinc sensitivity, TO:0000034 - chromium sensitivity, TO:0000021 - copper sensitivity	PO:0009005 - root 
11118	MT1F	OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb	METALLOTHIONEIN 1F	Metallothionein 1f, type 1 metallothionein f, Metallothionein type 1-like protein b	METALLOTHIONEIN 1F		12	LOC_Os12g38010. OsMT1c in Andres-Borderia et al. 2017. OsMT1f in Kumar et al. 2012.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0567800	LOC_Os12g38010.1				GO:0005507 - copper ion binding, GO:0000302 - response to reactive oxygen species, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0002657 - oxidative stress	
11119	MT1G	OsMT1g, MT1g, MT1Le, OsMT1Le	METALLOTHIONEIN 1G	Metallothionein 1g, type 1 metallothionein g, Metallothionein type 1-like protein e	METALLOTHIONEIN 1G		12	LOC_Os12g38290.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0571000	LOC_Os12g38290.1				GO:0010044 - response to aluminum ion, GO:0000302 - response to reactive oxygen species, GO:0005507 - copper ion binding	TO:0002657 - oxidative stress, TO:0000354 - aluminum sensitivity	
11120	MT2A	OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1	METALLOTHIONEIN 2A	Metallothionein 2a, type 2 metallothionein a, metallothionein 6, metallothionein-like gene-2, MT-like gene-2	METALLOTHIONEIN 2A		1	LOC_Os01g05650. P94029. D89931.  U43530. D15602. AB175913-AB175925 (O. rufipogon).OsMT2a in Wong et al. 2004, Kumar et al. 2012. OsMT-I-2a in Zhou et al. 2006. met6 in Miyashita et al. 2005.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0149800	LOC_Os01g05650.1				GO:0005507 - copper ion binding, GO:0006950 - response to stress		
11121	MTI2B	OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2	METALLOTHIONEIN I-2B	Metallothionein 2c, type 2 metallothionein c, metallothionein 5, metallothionein (MT)-like protein	METALLOTHIONEIN I-2B		1	Q5JM82. AF017365. AB175896-AB175912 (O. rufipogon). AB002820. OsMT2c in Wong et al. 2004, Kumar et al. 2012. OsMT-I-2b in Zhou et al. 2006. met5 in Miyashita et al. 2005. As3+ binding.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0974200	LOC_Os01g74300.1				GO:0046872 - metal ion binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
11122	MT2D	OsMT2d	METALLOTHIONEIN 2D	Metallothionein 2d, type 2 metallothionein d	METALLOTHIONEIN 2D		1		 Biochemical character	Os01g0149200	LOC_Os01g05585.1				GO:0046872 - metal ion binding		
11123	MTI3A	OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a	METALLOTHIONEIN I-3A	Metallothionein 3a, type 3 metallothionein a, metallothionein 2	METALLOTHIONEIN I-3A		1	LOC_Os01g10400. A2WLS0, A1YTM8. AF001396. met2 in Miyashita et al. 2005. AB175797-AB175896 (O. rufipogon). AU055773, AU055774, AU057501, AU057502. XB21 interacting protein (XB21IP). OsMT3a in Wong et al. 2004, Kumar et al. 2012. OsMT-I-3a in Zhou et al. 2006.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0200700	LOC_Os01g10400.1, LOC_Os01g10400.2				GO:0010038 - response to metal ion, GO:0046872 - metal ion binding	TO:0000432 - temperature response trait, TO:0000238 - growth media composition sensitivity	
11124	MTII1A	OsMT4, OsMT-II-1a, MT4, MT-II-1a	METALLOTHIONEIN II-1A	Metallothionein 4, type 4 metallothionein	METALLOTHIONEIN II-1A		10	LOC_Os10g39610. Q109B0, AY572960, AAS78805. OsMT4 in Wong et al. 2004, Kumar et al. 2012. OsMT-II-1a in Zhou et al. 2006.	 Biochemical character	Os10g0542100	LOC_Os10g39610.1, LOC_Os10g39610.2				GO:0008270 - zinc ion binding		
11125	CRY1A	OsCRY1a, OsCRY1, CRY1a, CRY2, OsCCT1a, CCT1a	CRYPTOCHROME 1A	cryptochrome 1a, Blue-light-receptor cryptochrome 1	CRYPTOCHROME 1A	Oscry1a-2	2	AB073546. AB024337. a rice ortholog of Arabidopsis gene for circadian clock component. CRY2 in Matsuzaki et al. 2015. TO:0000949: seedling growth and development trait.	 Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0573200	LOC_Os02g36380.1, LOC_Os02g36380.2			86.8	GO:0010343 - singlet oxygen-mediated programmed cell death, GO:0010075 - regulation of meristem growth, GO:0009882 - blue light photoreceptor activity, GO:0055114 - oxidation reduction, GO:0009785 - blue light signaling pathway, GO:0009637 - response to blue light, GO:0009640 - photomorphogenesis, GO:0010224 - response to UV-B, GO:0009881 - photoreceptor activity, GO:0009583 - detection of light stimulus, GO:0009414 - response to water deprivation, GO:0006281 - DNA repair, GO:0007623 - circadian rhythm, GO:0010118 - stomatal movement, GO:0046777 - protein amino acid autophosphorylation, GO:0046283 - anthocyanin metabolic process, GO:0003913 - DNA photolyase activity, GO:0010617 - circadian regulation of calcium ion oscillation, GO:0004672 - protein kinase activity, GO:0051510 - regulation of unidimensional cell growth, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000159 - blue light sensitivity, TO:0002689 - leaf sheath length, TO:0000601 - UV-B light sensitivity, TO:0002675 - gibberellic acid content	PO:0007131 - seedling development stage 
11126	CRY1B	OsCRY1b, OsCRY2, CRY1b, CRY1, OsCCT1b, CCT1b	CRYPTOCHROME 1B	cryptochrome 1b, Blue-light-receptor cryptochrome 2	CRYPTOCHROME 1B	cry1b-1, cry1b-2, cry1b-3, Oscry1b-1	4	AB073547. AB098568. a rice ortholog of Arabidopsis gene for circadian clock component. CRY1 in Matsuzaki et al. 2015. TO:0000949: seedling growth and development trait.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0452100	LOC_Os04g37920.6, LOC_Os04g37920.4, LOC_Os04g37920.1, LOC_Os04g37920.3			67.8	GO:0051510 - regulation of unidimensional cell growth, GO:0055114 - oxidation reduction, GO:0005524 - ATP binding, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0009637 - response to blue light, GO:0009640 - photomorphogenesis, GO:0009785 - blue light signaling pathway, GO:0009882 - blue light photoreceptor activity, GO:0010075 - regulation of meristem growth, GO:0010118 - stomatal movement, GO:0010343 - singlet oxygen-mediated programmed cell death, GO:0010617 - circadian regulation of calcium ion oscillation, GO:0046283 - anthocyanin metabolic process, GO:0006281 - DNA repair, GO:0005737 - cytoplasm, GO:0040008 - regulation of growth, GO:0009740 - gibberellic acid mediated signaling, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0030187 - melatonin biosynthetic process, GO:0003913 - DNA photolyase activity, GO:0046777 - protein amino acid autophosphorylation, GO:0009583 - detection of light stimulus, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity	TO:0002688 - leaf lamina joint bending, TO:0000135 - leaf length, TO:0006001 - salt tolerance, TO:0000159 - blue light sensitivity, TO:0002675 - gibberellic acid content, TO:0001007 - coleoptile length, TO:0002689 - leaf sheath length, TO:0002676 - brassinosteroid content	PO:0007131 - seedling development stage 
11127	CRY2	OsCRY2	CRYPTOCHROME 2	cryptochrome 2	CRYPTOCHROME 2	Oscry2-1	2	AB103094.	 Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0625000	LOC_Os02g41550.1, LOC_Os02g41550.2, LOC_Os02g41550.3, LOC_Os02g41550.4			101.2	GO:0051510 - regulation of unidimensional cell growth, GO:0009637 - response to blue light, GO:0009785 - blue light signaling pathway, GO:0010224 - response to UV-B, GO:0009908 - flower development, GO:0003913 - DNA photolyase activity, GO:0009648 - photoperiodism, GO:0006281 - DNA repair, GO:0009740 - gibberellic acid mediated signaling, GO:0009881 - photoreceptor activity	TO:0000159 - blue light sensitivity, TO:0002675 - gibberellic acid content, TO:0002689 - leaf sheath length, TO:0000601 - UV-B light sensitivity	PO:0007615 - flower development stage 
11128	BHLH133	OsbHLH133, bHLH133, OsRSL8, RSL8	BASIC HELIX-LOOP-HELIX PROTEIN 133	basic helix-loop-helix protein 133, ROOT HAIR DEFECTIVE-SIX LIKE 8	BASIC HELIX-LOOP-HELIX PROTEIN 133		12		 Tolerance and resistance - Stress tolerance	Os12g0508500	LOC_Os12g32400.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0034059 - response to anoxia		
11129	MTN	OsMTN	METHYLTHIOADENOSINE/S-ADENOSYL HOMOCYSTEINE NUCLEOSIDASE	Methylthioadenosine/S-adenosyl homocysteine nucleosidase, 5'-methylthioadenosine nucleosidase, MTA nucleosidase	METHYLTHIOADENOSINE/S-ADENOSYL HOMOCYSTEINE NUCLEOSIDASE		6	AU031688. AF458088.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0112200	LOC_Os06g02220.1				GO:0010106 - cellular response to iron ion starvation, GO:0003824 - catalytic activity, GO:0034224 - cellular response to zinc ion starvation, GO:0019509 - methionine salvage, GO:0005886 - plasma membrane, GO:0008782 - adenosylhomocysteine nucleosidase activity, GO:0009116 - nucleoside metabolic process	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	
11130	MTK1	OsMTK, OsMTK1, MTK	METHYLTHIORIBOSE KINASE 1	Methylthioribose Kinase 1, MTR kinase 1	METHYLTHIORIBOSE KINASE 1		4	Q7XR61. AY593959. D25025, AU031747, D23753.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0669800	LOC_Os04g57400.1				GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0019509 - methionine salvage, GO:0046522 - S-methyl-5-thioribose kinase activity	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000351 - zinc sensitivity	
11131	SAMS2	OsSAM2, SAM2, OsSAMS2, OS-SAMS2	S-ADENOSYL-L-METHIONINE SYNTHETASE 2	S-Adenosyl-l-methionine synthetase 2, S-adenosylmethionine synthetase 2	S-ADENOSYL-L-METHIONINE SYNTHETASE 2		1	P93438. U82833. D24436.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Biochemical character	Os01g0323600	LOC_Os01g22010.4, LOC_Os01g22010.1, LOC_Os01g22010.2, LOC_Os01g22010.3				GO:0005886 - plasma membrane, GO:0008652 - cellular amino acid biosynthetic process, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0046394 - carboxylic acid biosynthetic process, GO:0046872 - metal ion binding, GO:0004478 - methionine adenosyltransferase activity, GO:0005618 - cell wall, GO:0009414 - response to water deprivation, GO:0005730 - nucleolus, GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0006730 - one-carbon metabolic process, GO:0006555 - methionine metabolic process, GO:0015948 - methanogenesis, GO:0009809 - lignin biosynthetic process, GO:0006556 - S-adenosylmethionine biosynthetic process, GO:0005524 - ATP binding	TO:0000224 - iron sensitivity, TO:0000276 - drought tolerance, TO:0000351 - zinc sensitivity	
11132	APT1	OsAPT1, APRT	ADENINE PHOSPHORIBOSYLTRANSFERASE 1	Adenine phosphoribosyltransferase 1	ADENINE PHOSPHORIBOSYLTRANSFERASE 1		12	AU172608.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0589100	LOC_Os12g39860.1, LOC_Os12g39860.2				GO:0009116 - nucleoside metabolic process, GO:0009505 - plant-type cell wall, GO:0046686 - response to cadmium ion, GO:0009507 - chloroplast, GO:0003999 - adenine phosphoribosyltransferase activity, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0019509 - methionine salvage, GO:0005886 - plasma membrane, GO:0006168 - adenine salvage, GO:0005829 - cytosol	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	
11133	_	OsRPI, RPI	_	ribose-5-phosphate isomerase			4	C26897. GO:0080167:response to karrikin.	 Biochemical character	Os04g0306400	LOC_Os04g24140.1				GO:0008219 - cell death, GO:0005737 - cytoplasm, GO:0004751 - ribose-5-phosphate isomerase activity, GO:0009052 - pentose-phosphate shunt, non-oxidative branch, GO:0010228 - vegetative to reproductive phase transition, GO:0046109 - uridine biosynthetic process, GO:0030244 - cellulose biosynthetic process		
11134	DEP	OsDEP	DEHYDRATASE-ENOLASE-PHOSPHATASE	Dehydratase-enolase-phosphatase, Methylthioribulose-1-phosphate dehydratase-enolase-phosphatase	DEHYDRATASE-ENOLASE-PHOSPHATASE		11	Q2R483. D23987.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0484000	LOC_Os11g29370.1				GO:0009570 - chloroplast stroma, GO:0046570 - 5-methylthioribulose-1-phosphate 4-dehydratase activity, GO:0000287 - magnesium ion binding, GO:0019509 - methionine salvage, GO:0043874 - acireductone synthase activity, GO:0008967 - phosphoglycolate phosphatase activity, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
11135	IDI4	OsIDI4	IRON-DEFICIENCY-INDUCED PROTEIN 4	Aminotransferase OsIDI4, Fe-deficiency-induced protein 4	IRON-DEFICIENCY-INDUCED PROTEIN 4		9	AU164691. Putative aminotransferase catalyzing the synthesis of methionine. Asparate/tyrosine/aromatic aminotransferase. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0453800	LOC_Os09g28050.1, LOC_Os09g28050.2, LOC_Os09g28050.3				GO:0019509 - methionine salvage, GO:0008483 - transaminase activity, GO:0009058 - biosynthetic process, GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0042594 - response to starvation	TO:0000224 - iron sensitivity, TO:0000351 - zinc sensitivity	
11136	BHLH63	OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63	BASIC HELIX-LOOP-HELIX PROTEIN 63	basic helix-loop-helix protein 063, iron-related transcription factor 3	BASIC HELIX-LOOP-HELIX PROTEIN 63		3	GO:1901967: negative regulation of cellular response to iron ion starvation. Transcriptional regulator (putatively negative).	 Other,  Tolerance and resistance - Stress tolerance	Os03g0379300	LOC_Os03g26210.3, LOC_Os03g26210.2, LOC_Os03g26210.1				GO:0010106 - cellular response to iron ion starvation, GO:0003677 - DNA binding, GO:0055072 - iron ion homeostasis	TO:0000224 - iron sensitivity	PO:0009006 - shoot system , PO:0009005 - root 
11137	VIT1;2	OsVIT1;2, OsVIT1	VACUOLAR IRON TRANSPORTER 1;2	vacuolar iron influxer VIT1;2, Vacuolar Iron Transporter 1	VACUOLAR IRON TRANSPORTER 1;2	osvit1-1	4	Q6MWE5. OsVIT1 in Zhang et al. 2012.		Os04g0463400	LOC_Os04g38940.1, LOC_Os04g38940.2				GO:0016021 - integral to membrane, GO:0006880 - intracellular sequestering of iron ion, GO:0034755 - iron ion transmembrane transport, GO:0005774 - vacuolar membrane, GO:0005381 - iron ion transmembrane transporter activity		
11138	MIR	OsMIR	MITOCHONDRIAL IRON-REGULATED GENE	mitochondrial iron-regulated gene	MITOCHONDRIAL IRON-REGULATED PROTEIN	mir	12	TO:0020089: iron content.	 Tolerance and resistance - Stress tolerance	Os12g0282000	LOC_Os12g18410.1, LOC_Os12g18410.2				GO:0010106 - cellular response to iron ion starvation, GO:0055072 - iron ion homeostasis		
11139	FRDL1	OsFRDL1	FRD3-LIKE PROTEIN 1	FRD3-like protein 1	FRD3-LIKE PROTEIN 1		3	citrate efflux transporter. GO:1990641: response to iron ion starvation. TO:0020090: zinc content trait. TO:0006048: manganese concentration. TO:0006053: zinc concentration.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0216700	LOC_Os03g11734.1, LOC_Os03g11734.2, LOC_Os03g11734.3				GO:0009609 - response to symbiotic bacterium, GO:0016020 - membrane, GO:0015297 - antiporter activity, GO:0015238 - drug transporter activity, GO:0010039 - response to iron ion	TO:0000224 - iron sensitivity	
11140	_	OsFRDL2	_	FRD3-like protein 2			10		 Biochemical character	Os10g0206800	LOC_Os10g13940.1				GO:0015238 - drug transporter activity, GO:0015137 - citrate transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0015746 - citrate transport, GO:0006879 - cellular iron ion homeostasis, GO:0015297 - antiporter activity		
11141	_	OsFRDL3	_	FRD3-like protein 3			2			Os02g0833100	LOC_Os02g58620.1						
11142	FRDL4	OsFRDL4, MATE	FRD3-LIKE PROTEIN 4	FRD3-like protein 4	FRD3-LIKE PROTEIN 4		1	multidrug and toxic compound extrusion (MATE) family. citrate efflux MATE transporter. AB608020. GO:1904880: response to hydrogen sulfide.	 Tolerance and resistance - Stress tolerance	Os01g0919100	LOC_Os01g69010.1				GO:0046720 - citric acid secretion, GO:0010044 - response to aluminum ion	TO:0000354 - aluminum sensitivity	
11143	XB24	XB24	XA21 BINDING PROTEIN 24	XA21 binding protein 24	XA21 BINDING PROTEIN 24		1		 Tolerance and resistance - Disease resistance	Os01g0771200	LOC_Os01g56470.1				GO:0016887 - ATPase activity		
11144	XB15	XB15, OsPP2C35, PP2C35, OsPP59, SIP35	XA21 BINDING PROTEIN 15	XA21 binding protein 15, protein phosphatase 2C35, protein phosphatase 2C 35, protein phosphatase 59, SKIP interacting protein 35, SKIPa-interacting protein 35, SKIPa-interacting protein 35	XA21 BINDING PROTEIN 15		3	LOC_Os03g60650. Q84T94. AJ575237. EU368725. 	 Tolerance and resistance - Disease resistance,  Seed	Os03g0821300	LOC_Os03g60650.1				GO:0042742 - defense response to bacterium, GO:0046872 - metal ion binding, GO:0008152 - metabolic process, GO:0004721 - phosphoprotein phosphatase activity, GO:0005886 - plasma membrane, GO:0007165 - signal transduction, GO:0006952 - defense response, GO:0048366 - leaf development	TO:0000620 - embryo development trait, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait	
11145	_	XBOS31, OsRFPHC-7, OsRING222, RING222	_	RING finger protein OsRFPHC-7, RING-HC protein 7, RING-type E3 ubiquitin ligase 222			1	rice homolog of XB3. Q94CT7.	 Biochemical character	Os01g0974400	LOC_Os01g74320.1				GO:0016874 - ligase activity, GO:0016567 - protein ubiquitination, GO:0008270 - zinc ion binding		
11146	_	XBOS32, OsRING345, RING345	_	RING-type E3 ubiquitin ligase 345			2	rice homolog of XB3. Q6KAE5.		Os02g0791200	LOC_Os02g54860.1, LOC_Os02g54860.2				GO:0016567 - protein ubiquitination, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity		
11147	_	XBOS33, OsRING346, RING346	_	RING-type E3 ubiquitin ligase 346			10	rice homolog of XB3. Q337A0.		Os10g0521600	LOC_Os10g37730.1, LOC_Os10g37730.2, LOC_Os10g37730.3				GO:0008270 - zinc ion binding, GO:0004842 - ubiquitin-protein ligase activity		
11148	_	XBOS34, OsRING270, RING270	_	RING-type E3 ubiquitin ligase 270			7	rice homolog of XB3. Q7XI08.		Os07g0446100	LOC_Os07g26490.1, LOC_Os07g26490.2				GO:0016874 - ligase activity, GO:0016567 - protein ubiquitination, GO:0008270 - zinc ion binding		
11149	_	XBOS35, OsRING350, RING350	_	RING-type E3 ubiquitin ligase 350			8	rice homolog of XB3. Q7EZ44.		Os08g0258200	LOC_Os08g15840.1, LOC_Os08g15840.2, LOC_Os08g15840.4, LOC_Os08g15840.5				GO:0008270 - zinc ion binding, GO:0016874 - ligase activity, GO:0016567 - protein ubiquitination		
11150	XBOS36	OsXBOS36, OsRING3, RING3	XB3 PROTEIN HOMOLOG 6	XB3 protein homolog 6, RING-type E3 ubiquitin ligase 3	XB3 PROTEIN HOMOLOG 6	xbos36	6	rice homolog of XB3. a monocot-specific E3 ligase. a CULLIN RING-box protein. DQ088999. Q4JHE0. GO:0061630: ubiquitin protein ligase activity.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0128600/Os06g0128700	LOC_Os06g03800.1, LOC_Os06g03800.2				GO:0048236 - plant-type spore development, GO:0016874 - ligase activity, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0016567 - protein ubiquitination, GO:0005737 - cytoplasm, GO:0009555 - pollen development	TO:0000727 - sporogenesis, TO:0000437 - male sterility, TO:0000353 - aborted at pollen maturity stage	PO:0001007 - pollen development stage 
11151	MRS2-2	OsMGT1, OsMRS2-2, MGT1	MRS2/MGT FAMILY MEMBER 2	MAGNESIUM TRANSPORTER1, Magnesium transporter 1, MRS2/MGT family member 2	MRS2/MGT FAMILY MEMBER 2	osmgt1	1	AB731703. Q8S1N1.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0869200	LOC_Os01g64890.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0070482 - response to oxygen levels, GO:0015095 - magnesium ion transmembrane transporter activity	TO:0000015 - oxygen sensitivity	
11152	BC15	OsCTL1, CHIT13, OsCHIT13	BRITTLE CULM 15	brittle culm15, BRITTLE CULM15, brittle, culm-15, chitinase-like1, chitinase-like 1, chitinase 13			9		 Vegetative organ - Culm	Os09g0494200	LOC_Os09g32080.2, LOC_Os09g32080.1				GO:0004568 - chitinase activity, GO:0009414 - response to water deprivation, GO:0009809 - lignin biosynthetic process, GO:0009735 - response to cytokinin stimulus, GO:0005886 - plasma membrane, GO:0009408 - response to heat, GO:0006032 - chitin catabolic process, GO:0016998 - cell wall macromolecule catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0009651 - response to salt stress, GO:0043255 - regulation of carbohydrate biosynthetic process, GO:0009825 - multidimensional cell growth, GO:0010053 - root epidermal cell differentiation, GO:0010337 - regulation of salicylic acid metabolic process		
11153	SPX2	OsSPX2	SPX DOMAIN PROTEIN 2	SPX (SYG/PHO81/XPR1) domain gene 2, SPX domain protein 2	SPX DOMAIN PROTEIN 2	spx2, osspx2	2	Q6Z784 (japonica). A2X254 (indica). PDB accession number 7D3Y (Crystal structure of the osPHR2-osSPX2 complex). Pi signaling pathway. TO:0020098: nitrate sensitivity. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0202200	LOC_Os02g10780.1				GO:0009962 - regulation of flavonoid biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0009716 - flavonoid phytoalexin biosynthetic process, GO:0010167 - response to nitrate, GO:0042594 - response to starvation, GO:0010247 - detection of phosphate ion, GO:0040008 - regulation of growth, GO:0031347 - regulation of defense response, GO:0055062 - phosphate ion homeostasis, GO:0070417 - cellular response to cold, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0002688 - leaf lamina joint bending, TO:0000357 - growth and development trait, TO:0000206 - leaf angle, TO:0000112 - disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000102 - phosphorus sensitivity	
11154	SPX3	OsSPX3	SPX DOMAIN PROTEIN 3	SPX (SYG/PHO81/XPR1) domain gene 3, SPX domain protein 3	SPX DOMAIN PROTEIN 3	spx3, osspx3	10	Q7XEY9. TO:0020098: nitrate sensitivity. GO:1900425: negative regulation of defense response to bacterium.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0392600	LOC_Os10g25310.1				GO:0010167 - response to nitrate, GO:0042594 - response to starvation, GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0070417 - cellular response to cold, GO:0016036 - cellular response to phosphate starvation, GO:0042742 - defense response to bacterium	TO:0000102 - phosphorus sensitivity, TO:0000203 - bacterial leaf streak disease resistance	
11155	SPX4	OsSPX4, Os-SPX4	SPX DOMAIN PROTEIN 4	SPX (SYG/PHO81/XPR1) domain gene 4, SPX protein 4, SPX domain protein 4	SPX DOMAIN PROTEIN 4	spx4	3	Q10B79.  a phosphate signalling repressor. TO:0020102: phosphate content.TO:0020098: nitrate sensitivity. PO:0030123: panicle inflorescence. GO:1902347: response to strigolactone.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0827500	LOC_Os03g61200.2, LOC_Os03g61200.1				GO:0055062 - phosphate ion homeostasis, GO:0070417 - cellular response to cold, GO:0006794 - phosphorus utilization, GO:0019740 - nitrogen utilization, GO:0016036 - cellular response to phosphate starvation, GO:0007584 - response to nutrient, GO:0010167 - response to nitrate	TO:0000450 - grain yield per panicle, TO:0000168 - abiotic stress trait, TO:0000227 - root length, TO:0000576 - stem length, TO:0000102 - phosphorus sensitivity	PO:0009066 - anther , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009006 - shoot system 
11156	SPX5	OsSPX5	SPX DOMAIN PROTEIN 5	SPX (SYG/PHO81/XPR1) domain gene 5, SPX domain protein 5	SPX DOMAIN PROTEIN 5		3	Q7Y0F6. KF267997. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0406100	LOC_Os03g29250.1				GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0070417 - cellular response to cold, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0010167 - response to nitrate	TO:0000102 - phosphorus sensitivity	
11157	SPX6	OsSPX6	SPX DOMAIN PROTEIN 6	SPX (SYG/PHO81/XPR1) domain gene 6, SPX domain protein 6	SPX DOMAIN PROTEIN 6		7	LOC_Os07g42330. (not found in MSU Rice Genome Annotation Project Release 7 data). KF267998. Q8H398. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0614700					GO:0042594 - response to starvation, GO:0070417 - cellular response to cold	TO:0000102 - phosphorus sensitivity	
11158	_	LYP4, Os-LYP4, OsLYP4	_	lysin motif-containing protein 4, lysin motif (LysM)-containing protein  4, LysM-containing protein  4			9	GO:0061057: peptidoglycan recognition protein signaling pathway.	 Tolerance and resistance - Disease resistance	Os09g0452200	LOC_Os09g27890.1, LOC_Os09g27890.2				GO:0032491 - detection of molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0046658 - anchored to plasma membrane, GO:0016998 - cell wall macromolecule catabolic process, GO:0032490 - detection of molecule of bacterial origin, GO:0010200 - response to chitin	TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance	
11159	LYP6	Os-LYP6, OsLYP6	LYSIN MOTIF-CONTAINING PROTEIN 6	lysin motif-containing protein 6, lysin motif (LysM)-containing protein 6, LysM-containing protein 6	LYSIN MOTIF-CONTAINING PROTEIN 6		6	GO:0061057: peptidoglycan recognition protein signaling pathway.	 Tolerance and resistance - Disease resistance	Os06g0208800	LOC_Os06g10660.1				GO:0010200 - response to chitin, GO:0032490 - detection of molecule of bacterial origin, GO:0002237 - response to molecule of bacterial origin, GO:0009609 - response to symbiotic bacterium, GO:0050832 - defense response to fungus, GO:0046658 - anchored to plasma membrane, GO:0042742 - defense response to bacterium, GO:0032491 - detection of molecule of fungal origin	TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance	
11160	_	LYP2, Os-LYP2	_	lysin motif-containing protein 2			11			Os11g0548600	LOC_Os11g34570.1				GO:0016998 - cell wall macromolecule catabolic process		
11161	_	LYP3, Os-LYP3	_	lysin motif-containing protein 3			9			Os09g0548200	LOC_Os09g37600.1				GO:0016998 - cell wall macromolecule catabolic process		
11162	_	LYP5, Os-LYP5	_	lysin motif-containing protein 5			2			Os02g0769200	LOC_Os02g53000.1, LOC_Os02g53000.2				GO:0016998 - cell wall macromolecule catabolic process		
11163	LVP1	SDG724, OsSDG724, OsLVP1, OsSET34	LONG VEGETATIVE PHASE 1	SET Domain Group Protein 724, long vegetative phase1, SET protein 34	SET DOMAIN GROUP PROTEIN 724	lvp1, lvp1-1, lvp1-2, sdg724	9	GO:2000028: regulation of photoperiodism, flowering.	 Reproductive organ - Heading date,  Biochemical character	Os09g0307800	LOC_Os09g13740.1, LOC_Os09g13740.2				GO:0048573 - photoperiodism, flowering, GO:0034968 - histone lysine methylation, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0046975 - histone methyltransferase activity (H3-K36 specific)	TO:0002616 - flowering time, TO:0000137 - days to heading	
11164	SDG708	SDG708	SET DOMAIN GROUP PROTEIN 708	SET Domain Group Protein708	SET DOMAIN GROUP PROTEIN 708		4	LOC_Os04g34980 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character								
11165	SDG725	OsSDG725, OsSET8, ASHH2	SET DOMAIN GROUP PROTEIN 725	"SET Domain Group Protein725, SET DOMAIN GROUP725, SET protein 8, \"ABSENT, SMALL, OR HOMEOTIC DISCS 1 HOMOLOG 2\""	SET DOMAIN GROUP PROTEIN 725	sdg725	2	GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Heading date,  Seed - Morphological traits,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os02g0554000	LOC_Os02g34850.1				GO:0008270 - zinc ion binding, GO:0009742 - brassinosteroid mediated signaling, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:2000028 - regulation of photoperiodism, flowering, GO:0009908 - flower development, GO:0034968 - histone lysine methylation, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus	TO:0000397 - grain size, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending, TO:0000391 - seed size, TO:0000456 - spikelet number	PO:0007615 - flower development stage 
11166	SDG736	SDG736, OsSET9	SET DOMAIN GROUP PROTEIN 736	SET Domain Group Protein736, SET protein 9	SET DOMAIN GROUP PROTEIN 736		2		 Biochemical character	Os02g0611300	LOC_Os02g39800.1, LOC_Os02g39810.1				GO:0034968 - histone lysine methylation, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus		
11167	HAC701	OsHAC701, OsKIX_1, OsHAC5	HISTONE ACETYLTRANSFERASE HAC701	Histone acetyltransferase HAC701, KIX domain protein 1	HISTONE ACETYLTRANSFERASE HAC701		1	Q9XHY7. CBP family.	 Biochemical character	Os01g0246100	LOC_Os01g14370.1, LOC_Os01g14370.2				GO:0003712 - transcription cofactor activity, GO:0008270 - zinc ion binding, GO:0016573 - histone acetylation, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0004402 - histone acetyltransferase activity		
11168	HAC703	OsHAC703, OsKIX_2, OsHAC1	HISTONE ACETYLTRANSFERASE HAC703	Histone acetyltransferase HAC703, KIX domain protein 2	HISTONE ACETYLTRANSFERASE HAC703		2	Q6YXY2. CBP family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0137500	LOC_Os02g04490.1				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0016573 - histone acetylation, GO:0009737 - response to abscisic acid stimulus, GO:0003712 - transcription cofactor activity, GO:0004402 - histone acetyltransferase activity	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009030 - carpel , PO:0009006 - shoot system 
11169	HAC704	OsHAC704, OsKIX_4, OsHAC12	HISTONE ACETYLTRANSFERASE HAC704	Histone acetyltransferase HAC704, KIX domain protein 4	HISTONE ACETYLTRANSFERASE HAC704		6	Q5Z8V7. CBP family.	 Biochemical character	Os06g0704800	LOC_Os06g49130.1, LOC_Os06g49130.2				GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0004402 - histone acetyltransferase activity, GO:0003712 - transcription cofactor activity, GO:0006351 - transcription, DNA-dependent, GO:0016573 - histone acetylation		PO:0009009 - plant embryo 
11170	HAF701	OsHAF701, OsBrd7, Brd7	HISTONE ACETYLTRANSFERASE HAF701	Histone acetyltransferase HAF701, bromodomain-containing protein 7	HISTONE ACETYLTRANSFERASE HAF701		6	Q67W65. TAFII250-related family. PO:0030123: panicle inflorescence.	 Other,  Tolerance and resistance - Stress tolerance	Os06g0645700	LOC_Os06g43790.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0046686 - response to cadmium ion, GO:0016568 - chromatin modification, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009066 - anther 
11171	HAG702	OsHAG702, GCN5, OsGCN5, OsBrd10, Brd10	HISTONE ACETYLTRANSFERASE HAG702	Histone acetyltransferase HAG702, bromodomain-containing protein 10	HISTONE ACETYLTRANSFERASE HAG702		10	Q338B9. GNAT family. rice ortholog of yeast GCN5.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os10g0415900	LOC_Os10g28040.1				GO:0043966 - histone H3 acetylation, GO:0051302 - regulation of cell division, GO:0010075 - regulation of meristem growth, GO:0009926 - auxin polar transport, GO:0048364 - root development, GO:0009908 - flower development, GO:0009416 - response to light stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046686 - response to cadmium ion, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0000123 - histone acetyltransferase complex, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010015 - root morphogenesis, GO:0010484 - H3 histone acetyltransferase activity	TO:0000303 - cold tolerance, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000207 - plant height	PO:0009049 - inflorescence , PO:0006085 - root meristem , PO:0009030 - carpel 
11172	HAG703	OsHAG703, OsELP3, ELP3	HISTONE ACETYLTRANSFERASE HAG703	Histone acetyltransferase HAG703	HISTONE ACETYLTRANSFERASE HAG703		4	Q7X7L3. GNAT family.  an ortholog of yeast ELP3 and Arabidopsis ELO3. the catalytic subunit of Elongator.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0484900	LOC_Os04g40840.1				GO:0008283 - cell proliferation, GO:0005634 - nucleus, GO:0016573 - histone acetylation, GO:0035265 - organ growth, GO:0046872 - metal ion binding, GO:0051536 - iron-sulfur cluster binding, GO:0004402 - histone acetyltransferase activity, GO:0009294 - DNA mediated transformation, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0048366 - leaf development, GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent	TO:0000370 - leaf width, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000655 - leaf development trait, TO:0002681 - leaf curling	PO:0009009 - plant embryo , PO:0001050 - leaf development stage 
11173	HAG704	OsHAG704	HISTONE ACETYLTRANSFERASE HAG704	Histone acetyltransferase HAG704	HISTONE ACETYLTRANSFERASE HAG704		9	Q6ES10. GNAT family.	 Biochemical character	Os09g0347800	LOC_Os09g17850.1				GO:0043967 - histone H4 acetylation, GO:0005737 - cytoplasm, GO:0006348 - chromatin silencing at telomere, GO:0010485 - H4 histone acetyltransferase activity, GO:0000123 - histone acetyltransferase complex		
11174	HAM701	OsHAM701, OsMOF, MOF	HISTONE ACETYLTRANSFERASE HAM701	Histone acetyltransferase HAM701, Males-absent-on-the-first	HISTONE ACETYLTRANSFERASE HAM701		7	Q8LI34. MYST family. chromatin-modifying complex. histone modification protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0626600	LOC_Os07g43360.1				GO:0006351 - transcription, DNA-dependent, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0010485 - H4 histone acetyltransferase activity, GO:0009414 - response to water deprivation, GO:0000790 - nuclear chromatin, GO:0005634 - nucleus, GO:0004402 - histone acetyltransferase activity, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0000123 - histone acetyltransferase complex, GO:0016573 - histone acetylation, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11175	_	OsELF3-2, OsEF3	_	EARLY FLOWERING 3-2			1	an Ortholog of Arabidopsis EARLY FLOWERING 3.									
11176	NAC96	NAC94, ONAC096, ONAC96, NAC4, OsNAC4, OsNAC94	NAC DOMAIN-CONTAINING PROTEIN 96	NAC domain-containing protein 94, NAC domain-containing protein 096, NAC domain-containing protein 96	NAC DOMAIN-CONTAINING PROTEIN 96		7	NAC4 in Han et al. 2019. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0138200	LOC_Os07g04560.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0010200 - response to chitin, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0051607 - defense response to virus, GO:0002238 - response to molecule of fungal origin, GO:0002237 - response to molecule of bacterial origin, GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000074 - blast disease	
11178	NAC24	NAC94, ONAC024, ONAC24, OsNAC024, NAC024	NAC DOMAIN-CONTAINING PROTEIN 24	NAC domain-containing protein 94, NAC domain-containing protein 024, NAC domain-containing protein 24	NAC DOMAIN-CONTAINING PROTEIN 24	osnac24, osnac24-1, osnac24-2, osnac24-3	5	TO:0001069: cooking quality trait.	 Seed - Morphological traits - Endosperm,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Other	Os05g0415400	LOC_Os05g34310.1				GO:0010581 - regulation of starch biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005829 - cytosol, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0002656 - starch grain shape, TO:0000340 - total soluble sugar content, TO:0000696 - starch content, TO:0002655 - starch grain size, TO:0000196 - amylose content, TO:0000266 - chalky endosperm	PO:0009010 - seed , PO:0009089 - endosperm , PO:0009088 - seed coat , PO:0001170 - seed development stage , PO:0007633 - endosperm development stage 
11179	SGO1	OsSGO1	SHUGOSHIN 1	shugoshin 1, SHUGOSHIN1	SHUGOSHIN 1	Ossgo1, Ossgo1-1, Ossgo1-2, sgo1-1	2	the rice  homolog of ZmSGO1. HQ333477. GO:0090173: regulation of synaptonemal complex assembly.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Other	Os02g0799100	LOC_Os02g55570.1				GO:0005634 - nucleus, GO:0007130 - synaptonemal complex assembly, GO:0007126 - meiosis, GO:0007067 - mitosis, GO:0045132 - meiotic chromosome segregation, GO:0000775 - chromosome, centromeric region		
11180	SGO2	OsSGO2	SHUGOSHIN 2	shugoshin 2, SHUGOSHIN2	SHUGOSHIN 2												
11181	_	Osr2	_	transposable element Osr2, LTR retrotransposon Osr2			4	AL442110: 95121-100070. 	 Other						GO:0032196 - transposition		
11182	_	Osr23	_	transposable element Osr23, LTR retrotransposon Osr23			1	AP002843: 144255-139782.	 Other								
11183	_	Osr35	_	transposable element Osr35, LTR retrotransposon Osr35			10	AC068924: 94924-100611.	 Other								
11184	_	Osr36	_	transposable element Osr36, LTR retrotransposon Osr36			1	AP001551: 59722-64876.	 Other								
11185	_	Osr42	_	transposable element Osr42					 Other								
11186	AHA1	OSA1, OsA1, osAHA1, AHA1	H+-ATPASE 1	plasma membrane H+-ATPase 1, PM H+-ATPase 1, plasma membrane H+ P-Type ATPase 1	H+-ATPASE 1		3	D10207, AJ439999. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0689300	LOC_Os03g48310.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0009651 - response to salt stress, GO:0046872 - metal ion binding, GO:0006754 - ATP biosynthetic process, GO:0010167 - response to nitrate, GO:0016021 - integral to membrane, GO:0060359 - response to ammonium ion	TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0000025 - root tip , PO:0009005 - root 
11187	AHA2	OSA2, OsA2, osAHA2, AHA2, OsPMA2	H+-ATPASE 2	plasma membrane H+-ATPase 2, PM H+-ATPase 2, plasma membrane H+ P-Type ATPase 2	H+-ATPASE 2		7	D31843, AJ440000. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os07g0191200	LOC_Os07g09340.1				GO:0006754 - ATP biosynthetic process, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0010106 - cellular response to iron ion starvation, GO:0010167 - response to nitrate, GO:0046872 - metal ion binding	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance	
11188	AHA3	OSA3, OsA3, osAHA3, AHA3, PAM3	H+-ATPASE 3	plasma membrane H+-ATPase 3, PM H+-ATPase 3, plasma membrane H+ P-Type ATPase 3	H+-ATPASE 3		12	AF110268. EF611739, EU190458.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0638700	LOC_Os12g44150.1, LOC_Os12g44150.2				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0006754 - ATP biosynthetic process, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0060359 - response to ammonium ion, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
11189	LMPA	OSA7, OsA7, osAHA7, AHA7, PAA-Hwa, OsLMPA	LESION MIMIC LEAF AND PANICLE APICAL ABORTION	plasma membrane H+-ATPase 7, PM H+-ATPase 7, plasma membrane H+ P-Type ATPase 7, panicle apical abortion-h, lesion mimic leaf and panicle apical abortion	H+-ATPASE 7	paa-h, lmpa	4	AJ440218. Q7XPY2. the candidate gene of panicle apical abortion (PAA-Hwa) mutant from a japonica cultivar Hwacheongbyeo (Akter et al. 2014). TO:0000847: panicle anatomy and morphology trait . TO:0020098: nitrate sensitivity. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence.	 Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - panicle,  Biochemical character,  Tolerance and resistance - Lesion mimic	Os04g0656100	LOC_Os04g56160.1, LOC_Os04g56160.2, LOC_Os04g56160.3				GO:0016021 - integral to membrane, GO:0006754 - ATP biosynthetic process, GO:0009414 - response to water deprivation, GO:0010119 - regulation of stomatal movement, GO:0010167 - response to nitrate, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0005524 - ATP binding, GO:0009658 - chloroplast organization, GO:0009408 - response to heat, GO:0010229 - inflorescence development, GO:0043067 - regulation of programmed cell death, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0060359 - response to ammonium ion, GO:0046872 - metal ion binding, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism	TO:0002715 - chloroplast development trait, TO:0000657 - spikelet anatomy and morphology trait, TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000040 - panicle length, TO:0000496 - carotenoid content, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content, TO:0000063 - mimic response, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000293 - chlorophyll-a content, TO:0000371 - yield trait, TO:0000295 - chlorophyll-b content, TO:0000447 - filled grain number	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root , PO:0025034 - leaf , PO:0000025 - root tip 
11190	AHA8	OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1	H+-ATPASE 8	plasma membrane H+-ATPase 8, PM H+-ATPase 8, plasma membrane H+ P-Type ATPase 8, H+-ATPase 1	H+-ATPASE 8	Osa8, Os-ha1, ha1	3	AJ440219. Os-HA1 in Wang et al. 2014. TO:0020102: phosphate content. TO:0020098: nitrate sensitivity. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os03g0100800	LOC_Os03g01120.1				GO:0006812 - cation transport, GO:0005886 - plasma membrane, GO:0009566 - fertilization, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0010167 - response to nitrate, GO:0006754 - ATP biosynthetic process, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0016021 - integral to membrane	TO:0000078 - root dry weight, TO:0000227 - root length	
11191	AHA9	OSA9, OsA9, osAHA9, AHA9	H+-ATPASE 9	plasma membrane H+-ATPase 9, PM H+-ATPase 9, plasma membrane H+ P-Type ATPase 9	H+-ATPASE 9		3	AJ440220.	 Biochemical character	Os03g0183900	LOC_Os03g08560.1				GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0007035 - vacuolar acidification, GO:0007033 - vacuole organization, GO:0006812 - cation transport, GO:0010023 - proanthocyanidin biosynthetic process, GO:0006754 - ATP biosynthetic process, GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
11192	AHA4	OSA4, OsA4, osAHA4, AHA4	H+-ATPASE 4	plasma membrane H+-ATPase 4, PM H+-ATPase 4, plasma membrane H+ P-Type ATPase 4	H+-ATPASE 4		6		 Biochemical character								
11193	AHA5	OSA5, OsA5, osAHA5, AHA5	H+-ATPASE 5	plasma membrane H+-ATPase 5, PM H+-ATPase 5, plasma membrane H+ P-Type ATPase 5	H+-ATPASE 5		2	TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Biochemical character						GO:0006754 - ATP biosynthetic process, GO:0016021 - integral to membrane, GO:0010167 - response to nitrate, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0019829 - cation-transporting ATPase activity		
11194	AHA6	OSA6, OsA6, osAHA6, AHA6	H+-ATPASE 6	plasma membrane H+-ATPase 6, PM H+-ATPase 6, plasma membrane H+ P-Type ATPase 6	H+-ATPASE 6		2		 Biochemical character	Os02g0797300	LOC_Os02g55400.1				GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0005773 - vacuole, GO:0006754 - ATP biosynthetic process, GO:0009414 - response to water deprivation, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0010119 - regulation of stomatal movement		
11195	AHA10	OSA10, OsA10, osAHA10, AHA10	H+-ATPASE 10	plasma membrane H+-ATPase 10, PM H+-ATPase 10, plasma membrane H+ P-Type ATPase 10	H+-ATPASE 10		6		 Biochemical character	Os06g0181500	LOC_Os06g08310.1						
11196	SPS1	OsSPS1	SOLANESYL-PP SYNTHASE 1	solanesyl diphosphate synthase 1, solanesyl-PP synthase 1, SPP synthase 1	SOLANESYL-PP SYNTHASE 1		6	Q653T6. GO:0052923:all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity.	 Biochemical character	Os06g0678200	LOC_Os06g46450.1, LOC_Os06g46450.2				GO:0006744 - ubiquinone biosynthetic process, GO:0008299 - isoprenoid biosynthetic process, GO:0009570 - chloroplast stroma, GO:0009507 - chloroplast, GO:0046872 - metal ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009790 - embryonic development, GO:0009739 - response to gibberellin stimulus, GO:0005739 - mitochondrion, GO:0004161 - dimethylallyltranstransferase activity, GO:0050347 - trans-octaprenyltranstransferase activity	TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	
11197	SPS2	OsSPS2	SOLANESYL-PP SYNTHASE 2	solanesyl diphosphate synthase 2, solanesyl-PP synthase 2, SPP synthase 2	SOLANESYL-PP SYNTHASE 2		5	Q75HZ9. GO:0052923:all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity.	 Biochemical character	Os05g0582300	LOC_Os05g50550.1				GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0008299 - isoprenoid biosynthetic process, GO:0009507 - chloroplast, GO:0009570 - chloroplast stroma, GO:0050347 - trans-octaprenyltranstransferase activity, GO:0046872 - metal ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0010236 - plastoquinone biosynthetic process, GO:0015979 - photosynthesis, GO:0009536 - plastid	TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
11198	FPPS1	OsFPPS1, FPPS, OsFPS	FARNESYL-PP SYNTHASE 1	farnesyl diphosphate synthase 1, farnesyl diphosphate synthase, FDP synthase, farnesyl-PP synthase 1, FPP synthase 1	FARNESYL-PP SYNTHASE 1		1	D85317.	 Biochemical character	Os01g0703400	LOC_Os01g50760.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005829 - cytosol, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0004337 - geranyltranstransferase activity, GO:0008299 - isoprenoid biosynthetic process, GO:0004161 - dimethylallyltranstransferase activity	TO:0000401 - plant growth hormone sensitivity	
11199	FPPS2	OsFPPS2, OsFPS2, FPS2	FARNESYL-PP SYNTHASE 2	farnesyl diphosphate synthase 2, farnesyl-PP synthase 2, FPP synthase 2	FARNESYL-PP SYNTHASE 2		5	AB021979.	 Biochemical character	Os05g0543400	LOC_Os05g46580.1				GO:0009753 - response to jasmonic acid stimulus, GO:0008299 - isoprenoid biosynthetic process, GO:0004337 - geranyltranstransferase activity, GO:0005829 - cytosol, GO:0004161 - dimethylallyltranstransferase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
11200	FPPS3	OsFPPS3, OsFPS5, FPS5	FARNESYL-PP SYNTHASE 3	farnesyl diphosphate synthase 3, farnesyl-PP synthase 3, FPP synthase 3	FARNESYL-PP SYNTHASE 3		4	OsFPS5 in You et al. 2020.	 Biochemical character	Os04g0657100	LOC_Os04g56210.1				GO:0004161 - dimethylallyltranstransferase activity, GO:0005737 - cytoplasm, GO:0008299 - isoprenoid biosynthetic process, GO:0004337 - geranyltranstransferase activity		
11201	GGPPS1	OsGGPPS1	GERANYLGERANYL DIPHOSPHATE SYNTHASE 1	geranylgeranyl diphosphate synthase 1, GGPP synthase 1, geranylgeranyl-PP synthase 1	GERANYLGERANYL DIPHOSPHATE SYNTHASE 1	osggpps-1	7		 Biochemical character,  Coloration - Chlorophyll	Os07g0580900	LOC_Os07g39270.1, LOC_Os07g39270.2				GO:0010287 - plastoglobule, GO:0015995 - chlorophyll biosynthetic process, GO:0009570 - chloroplast stroma, GO:0042651 - thylakoid membrane, GO:0009507 - chloroplast, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0004311 - farnesyltranstransferase activity, GO:0009513 - etioplast, GO:0005739 - mitochondrion, GO:0005783 - endoplasmic reticulum, GO:0008299 - isoprenoid biosynthetic process	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	
11202	GGPPS2	OsGGPPS2, OsGRP, GRP, OsGGPPS1, GGPPS1	GERANYLGERANYL DIPHOSPHATE SYNTHASE 2	geranylgeranyl diphosphate synthase 2, GGPPS recruiting protein, GGPS recruiting protein	GERANYLGERANYL DIPHOSPHATE SYNTHASE 2		2	OsGGPPS1 in Ninkuu et al. 2022.	 Biochemical character	Os02g0668100	LOC_Os02g44780.1, LOC_Os02g44780.2, LOC_Os02g44780.3				GO:0016740 - transferase activity, GO:0010287 - plastoglobule, GO:0009739 - response to gibberellin stimulus, GO:0008299 - isoprenoid biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009570 - chloroplast stroma	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
11203	SPS11	sps11, OsSPS11, OsSPS5, SPS5	SUCROSE PHOSPHATE SYNTHASE 11	sucrose phosphate synthase 11	SUCROSE PHOSPHATE SYNTHASE 11		11	LOC_Os11g12810. Q53JI9. BI809390. OsPSP5 in Almadanim et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0236100	LOC_Os11g12810.1				GO:0005986 - sucrose biosynthetic process, GO:0046524 - sucrose-phosphate synthase activity, GO:0009409 - response to cold, GO:0005886 - plasma membrane	TO:0000303 - cold tolerance	
11204	SPS8	OsSPS8, OsSPS4, SPS4	SUCROSE PHOSPHATE SYNTHASE 8	sucrose phosphate synthase 8	SUCROSE PHOSPHATE SYNTHASE 8		8	LOC_Os08g20660. Q6ZHZ1. CB667221, CB667222, CB666200, CF326019, CB678310, CA999246, CB638627, CB638628, CF309892, CB639268. OsSPS4 in Almadanim et al. 2017.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0301500	LOC_Os08g20660.1, LOC_Os08g20660.2				GO:0046524 - sucrose-phosphate synthase activity, GO:0009409 - response to cold, GO:0005986 - sucrose biosynthetic process, GO:0005886 - plasma membrane	TO:0000303 - cold tolerance	
11205	SPS2	OsSPS2	SUCROSE PHOSPHATE SYNTHASE 2	sucrose phosphate synthase 2	SUCROSE PHOSPHATE SYNTHASE 2		2	B7F7B9. CB683436, CB683879, CA763243, AU197546, AU062665.	 Biochemical character	Os02g0184400	LOC_Os02g09170.1, LOC_Os02g09170.2				GO:0005886 - plasma membrane, GO:0046524 - sucrose-phosphate synthase activity, GO:0005986 - sucrose biosynthetic process		
11206	SPS6	OsSPS6	SUCROSE PHOSPHATE SYNTHASE 6	sucrose phosphate synthase 6	SUCROSE PHOSPHATE SYNTHASE 6		6	LOC_Os06g43630. Q67WN8. CB635596, CB635597, CB645118, CB645119, CB641942, CB641943, CB649251, CB649252, CB669304, CB641944, CA999208, CB638899, CB638900, C25857, CF328390.	 Biochemical character	Os06g0643800	LOC_Os06g43630.1				GO:0005886 - plasma membrane, GO:0046524 - sucrose-phosphate synthase activity, GO:0005986 - sucrose biosynthetic process		
11207	_	OsPPT1a	_	p-hydroxybenzoate polyprenyltransferase 1a			8		 Biochemical character	Os08g0322600	LOC_Os08g23320.1				GO:0009790 - embryonic development, GO:0047293 - 4-hydroxybenzoate nonaprenyltransferase activity, GO:0016021 - integral to membrane, GO:0006744 - ubiquinone biosynthetic process		
11208	_	OsPPT1b	_	p-hydroxybenzoate polyprenyltransferase 1b													
11209	_	OsPPT1c	_	p-hydroxybenzoate polyprenyltransferase 1c													
11210	HGGT	OsHGGT, OsHST, HST	HOMOGENTISIC ACID GERANYLGERANYL TRANSFERASE	homogentisic acid geranylgeranyl transferase, homogentisic acid solanesyl transferase	HOMOGENTISIC ACID GERANYLGERANYL TRANSFERASE		6	AY222862. Q0DAK7. vitamin E biosynthetic enzyme. OsHST (homogentisic acid solanesyl transferase) in Hwang et al. 2014.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0646900	LOC_Os06g43880.1				GO:0004659 - prenyltransferase activity, GO:0009416 - response to light stimulus, GO:0006979 - response to oxidative stress, GO:0016021 - integral to membrane	TO:0002657 - oxidative stress, TO:0000075 - light sensitivity	
11211	PDCD5	OsPDCD5	PROGRAMMED CELL DEATH 5	programmed cell death 5			5	AAP92158. AY327105. AY749430 (alternatively spliced variant). a Homolog of the Mammalian PDCD5. TO:0000847: panicle inflorescence morphology trait. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os05g0547850	LOC_Os05g47446.1, LOC_Os05g47446.2				GO:0010371 - regulation of gibberellin biosynthetic process, GO:0003677 - DNA binding, GO:0012501 - programmed cell death, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0010600 - regulation of auxin biosynthetic process, GO:0009691 - cytokinin biosynthetic process, GO:0009734 - auxin mediated signaling pathway, GO:0009740 - gibberellic acid mediated signaling, GO:0009736 - cytokinin mediated signaling, GO:0009926 - auxin polar transport	TO:0000396 - grain yield, TO:0002672 - auxin content, TO:0006032 - panicle size, TO:0002660 - cytokinin content, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000040 - panicle length, TO:0002675 - gibberellic acid content, TO:0002730 - grain shape, TO:0000089 - panicle type	PO:0009005 - root , PO:0009066 - anther , PO:0009039 - glume , PO:0009047 - stem , PO:0020142 - stem internode , PO:0025034 - leaf , PO:0005020 - vascular bundle 
11213	FPN1	OsFPN1	FERROPORTIN 1	Ferroportin1, OsFerroportin, Ferroportin	FERROPORTIN 1	osfpn1-1, Osfpn1-2, osfpn1-3	6	Q5Z922. GO:0035444:nickel cation transmembrane transport. TO:0001044: cobalt content trait. TO:0006051: nickel content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0560000	LOC_Os06g36450.1				GO:0010232 - vascular transport, GO:0005381 - iron ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0055068 - cobalt ion homeostasis, GO:0005886 - plasma membrane, GO:0015099 - nickel ion transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane, GO:0005794 - Golgi apparatus, GO:0015087 - cobalt ion transmembrane transporter activity, GO:0010299 - detoxification of cobalt ion, GO:0010045 - response to nickel ion, GO:0032025 - response to cobalt ion	TO:0000016 - cobalt sensitivity	PO:0009005 - root , PO:0025082 - reproductive shoot system 
11214	OPT7	OPT, OsOPT7	OLIGOPEPTIDE TRANSPORTER 7	Oligopeptide Transporter, Oligopeptide Transporter 7	OLIGOPEPTIDE TRANSPORTER 7	opt7-1, opt7-2	3	TO:0020090: zinc content trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0751100	LOC_Os03g54000.1, LOC_Os03g54000.2				GO:0048316 - seed development, GO:0010106 - cellular response to iron ion starvation, GO:0055072 - iron ion homeostasis, GO:0005886 - plasma membrane, GO:0010114 - response to red light, GO:0006875 - cellular metal ion homeostasis, GO:0055085 - transmembrane transport	TO:0000224 - iron sensitivity, TO:0000158 - red light sensitivity, TO:0000653 - seed development trait	PO:0009006 - shoot system , PO:0000025 - root tip , PO:0003011 - root vascular system , PO:0001170 - seed development stage 
11215	ICL	OsEnS-107, EnS-107, OsI85, I85, OsICL, Osl85, l43, Osl43, OsL85	ISOCITRATE LYASE	isocitrate lyase, endosperm-specific gene 107	ISOCITRATE LYASE	icl	7	AF251075. Osl85 in Wu and Yang 2016, Xing et al. 2018, Gong et al. 2019, Zhao et al. 2021, Chen et al. 2021. l43 in Fang et al. 2016.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os07g0529000	LOC_Os07g34520.3, LOC_Os07g34520.2, LOC_Os07g34520.1				GO:0019752 - carboxylic acid metabolic process, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0004451 - isocitrate lyase activity, GO:0009651 - response to salt stress, GO:0009413 - response to flooding, GO:0050832 - defense response to fungus	TO:0000468 - leaf blast disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000249 - leaf senescence, TO:0000524 - submergence tolerance	PO:0001054 - 4 leaf senescence stage 
11216	GNS1	OsPR2, PR2, Gns1, OsGNS1, OsEGL1	BETA GLUCANASE 1	(1,3;1,4)-b-glucanase, (1,3;1,4)-beta-glucanase, pathogenesis-related gene 2, endo-(1,3;1,4)-beta-glucanase 1, glucanase-1	BETA GLUCANASE 1		5	X58877. AY768944. a rice beta-glucanase gene.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Biochemical character	Os05g0375400	LOC_Os05g31140.1, LOC_Os05g31140.2, LOC_Os05g31140.3				GO:0005975 - carbohydrate metabolic process, GO:0009817 - defense response to fungus, incompatible interaction, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009266 - response to temperature stimulus, GO:0010332 - response to gamma radiation, GO:0050832 - defense response to fungus, GO:0005618 - cell wall, GO:0009723 - response to ethylene stimulus, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009617 - response to bacterium, GO:0048364 - root development, GO:0009735 - response to cytokinin stimulus, GO:0009645 - response to low light intensity stimulus, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0043169 - cation binding, GO:0048046 - apoplast, GO:0042972 - licheninase activity, GO:0002238 - response to molecule of fungal origin, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold	TO:0000401 - plant growth hormone sensitivity, TO:0000173 - ethylene sensitivity, TO:0000074 - blast disease, TO:0000167 - cytokinin sensitivity, TO:0000460 - light intensity sensitivity, TO:0000207 - plant height, TO:0000656 - root development trait, TO:0000063 - mimic response, TO:0000168 - abiotic stress trait, TO:0000432 - temperature response trait, TO:0000179 - biotic stress trait	PO:0009005 - root , PO:0007520 - root development stage 
11217	BURP16	OsRD22, RD22, OsBURP16	BURP DOMAIN-CONTAINING PROTEIN 16	polygalacturonase isoenzyme 1 beta subunit, BURP domain-containing protein 16, beta subunit of polygalacturonase 1, polygalacturonase 1 beta subunit, non-catalytic PG1beta subunit	BURP DOMAIN-CONTAINING PROTEIN 16		10	Q7XES5. AF251069.	 Tolerance and resistance - Stress tolerance	Os10g0409400	LOC_Os10g26940.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0010332 - response to gamma radiation	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
11218	SNRK1BETA3	akin-b, akin-beta, OsSnRK1beta3, SnRK1beta3	SUCROSE NON-FERMENTING-1-RELATED PROTEIN KINASE-1 REGULATORY BETA 3 SUBUNIT	b-subunit of SnRK1, beta-subunit of SnRK1, Sucrose non-fermenting-1-related protein kinase-1 regulatory Beta 3 subunit, SnRK1 Beta 3 subunit	SUCROSE NON-FERMENTING-1-RELATED PROTEIN KINASE-1 REGULATORY BETA 3 SUBUNIT		5		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0491200	LOC_Os05g41220.1, LOC_Os05g41220.2				GO:0007623 - circadian rhythm, GO:0043562 - cellular response to nitrogen levels, GO:0009646 - response to absence of light, GO:0050832 - defense response to fungus, GO:0042594 - response to starvation	TO:0000074 - blast disease, TO:0000460 - light intensity sensitivity	PO:0025034 - leaf 
11219	ADC2	ADCa, OsAdc2, OsADC2	ARGININE DECARBOXYLASE 2	Arginine decarboxylase a, Arginine decarboxylase 2	ARGININE DECARBOXYLASE 2		4	LOC_Os04g01690. Q7XRA1. FJ746894.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0107600 	LOC_Os04g01690.1, LOC_Os04g01690.2, LOC_Os04g01690.3				GO:0008295 - spermidine biosynthetic process, GO:0009651 - response to salt stress, GO:0009446 - putrescine biosynthetic process, GO:0008792 - arginine decarboxylase activity, GO:0006596 - polyamine biosynthetic process, GO:0006527 - arginine catabolic process	TO:0006001 - salt tolerance	
11220	ODCA	ODCa, OsODC1, ODC1	ORNITHINE DECARBOXYLASE A	Ornithine decarboxylase a, ornithine decarboxylase 1	ORNITHINE DECARBOXYLASE A		9		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os09g0543400	LOC_Os09g37120.1				GO:0048364 - root development, GO:0003824 - catalytic activity, GO:0009651 - response to salt stress, GO:0010044 - response to aluminum ion, GO:0006596 - polyamine biosynthetic process, GO:0009446 - putrescine biosynthetic process	TO:0006001 - salt tolerance, TO:0000354 - aluminum sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage 
11221	ODCB	ODCb, OsODC3, ODC3, OsODC1, ODC1	ORNITHINE DECARBOXYLASE B	Ornithine decarboxylase b, ornithine decarboxylase 3	ORNITHINE DECARBOXYLASE B		2	OsODC1 in Zhou et al. 2020.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0482400	LOC_Os02g28110.1				GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress, GO:0003824 - catalytic activity	TO:0006001 - salt tolerance	
11222	PAOA	PAOa, OsPAO2, PAO2, OsPAOa	POLYAMINE OXIDASE A	Polyamine oxidase a, Polyamine oxidase 2	POLYAMINE OXIDASE A		3	FAD-containing polyamide oxidase. GO:1904583: response to polyamine macromolecule. GO:1904585: response to putrescine.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0193400	LOC_Os03g09810.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0006598 - polyamine catabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0005576 - extracellular region, GO:0016491 - oxidoreductase activity	TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance	
11223	PAOB	PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2	POLYAMINE OXIDASE B	Polyamine oxidase b, Polyamine oxidase 6	POLYAMINE OXIDASE B		9	FAD-containing polyamide oxidase. OsPAO6 in Sagor et al. 2021. GO:1904583: response to polyamine macromolecule. GO:1904585: response to putrescine. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0368200	LOC_Os09g20260.1				GO:0009737 - response to abscisic acid stimulus, GO:0006598 - polyamine catabolic process, GO:0009733 - response to auxin stimulus, GO:0016491 - oxidoreductase activity, GO:0005576 - extracellular region, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
11224	_	DAO	_	Copper amine oxidase			7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0572100	LOC_Os07g38440.1				GO:0005618 - cell wall, GO:0005507 - copper ion binding, GO:0009308 - amine metabolic process, GO:0008131 - amine oxidase activity, GO:0048038 - quinone binding		
11225	FTL1	FTL, FT-L1, OsFTL1, FTL1	FLOWERING TIME LIKE GENE 1	FT-like gene 1			1	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.	 Reproductive organ - Heading date	Os01g0218500	LOC_Os01g11940.1				GO:0009737 - response to abscisic acid stimulus, GO:0009416 - response to light stimulus	TO:0000615 - abscisic acid sensitivity, TO:0002616 - flowering time, TO:0000075 - light sensitivity	
11226	FTL4	OsFT, osFT, FT-L 4, OsFTL4, FT-L4, FT-1, OsFT-1	FLOWERING TIME LIKE GENE 4	FT-like gene 4			9	AQ289409. FT-1 in Yin et al. 2021.	 Reproductive organ - Heading date	Os09g0513500	LOC_Os09g33850.1				GO:0048573 - photoperiodism, flowering, GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000075 - light sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0002616 - flowering time, TO:0000137 - days to heading	
11227	FTL5	FT-L 5, OsFTL5, FT-L5	FLOWERING TIME LIKE GENE 5	FT-like gene 5			2	AP004124. PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.			LOC_Os02g39064.1						
11228	FTL6	FT-L 6, OsFTL6, FT-L6	FLOWERING TIME LIKE GENE 6	FT-like gene 6			4	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.		Os04g0488400	LOC_Os04g41130.1				GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000075 - light sensitivity, TO:0000172 - jasmonic acid sensitivity	
11229	FTL7	FT-L 7, OsFTL7	FLOWERING TIME LIKE GENE 7	FT-like gene 7			12	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.		Os12g0232300	LOC_Os12g13030.1				GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
11230	FTL8	FT-L 8, OsFTL8	FLOWERING TIME LIKE GENE 8	FT-like gene 8			1	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.		Os01g0202700	LOC_Os01g10590.1				GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
11231	FTL10	OsFTL10	FLOWERING TIME LIKE GENE 10	FT-like gene 10, Flowering Locus T-like 10			5	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. GO:1902584: positive regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os05g0518000	LOC_Os05g44180.1				GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:2000028 - regulation of photoperiodism, flowering, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0010555 - response to mannitol stimulus, GO:0009651 - response to salt stress, GO:0009735 - response to cytokinin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	
11232	FTL11	OsFTL11	FLOWERING TIME LIKE GENE 11	FT-like gene 11			11	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.		Os11g0293800	LOC_Os11g18870.1						
11233	FTL12	OsFTL12, FT-L11	FLOWERING TIME LIKE GENE 12	FT-like gene 12, FLOWERING LOCUS T-like 12, FT-like gene 11		osftl12-ko	6	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. FT-L11 in Ishikawa et al. 2005. GO:2000904: regulation of starch metabolic process.	 Reproductive organ - Heading date	Os06g0552900	LOC_Os06g35940.1				GO:0005982 - starch metabolic process, GO:0070613 - regulation of protein processing, GO:0009416 - response to light stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0034976 - response to endoplasmic reticulum stress, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0005985 - sucrose metabolic process	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000137 - days to heading, TO:0000075 - light sensitivity, TO:0002616 - flowering time	PO:0009047 - stem , PO:0009006 - shoot system , PO:0025034 - leaf 
11234	FTL13	OsFTL13	FLOWERING TIME LIKE GENE 13	FT-like gene 13			2	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family.		Os02g0232300	LOC_Os02g13830.1				GO:0009416 - response to light stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000075 - light sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
11235	SIR2B	Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2, DLN255, OsDLN255, OsSRT702, SRT702	SIRTUIN 2B	DLN repressor 255, DLN motif protein 255, sirtuin2b, sirtuin 702	SIRTUIN 2B	ossrt2, srt2-1, srt2-2	12	ABA95936. Histone deacetylase. SIR2-like gene.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0179800	LOC_Os12g07950.3, LOC_Os12g07950.2, LOC_Os12g07950.1				GO:0008270 - zinc ion binding, GO:0002238 - response to molecule of fungal origin, GO:0005759 - mitochondrial matrix, GO:0034979 - NAD-dependent protein deacetylase activity, GO:0009733 - response to auxin stimulus, GO:0006476 - protein amino acid deacetylation, GO:0016740 - transferase activity, GO:0034355 - NAD salvage, GO:0047484 - regulation of response to osmotic stress, GO:0070933 - histone H4 deacetylation, GO:0033552 - response to vitamin B3, GO:0070403 - NAD binding, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0045088 - regulation of innate immune response, GO:0010363 - regulation of plant-type hypersensitive response	TO:0000112 - disease resistance, TO:0000129 - false smut disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance	PO:0025034 - leaf 
11236	_	OsFAD7	_				3	GO:0080167:response to karrikin.	 Tolerance and resistance - Stress tolerance	Os03g0290300	LOC_Os03g18070.1				GO:0042389 - omega-3 fatty acid desaturase activity, GO:0009409 - response to cold, GO:0005783 - endoplasmic reticulum, GO:0009941 - chloroplast envelope, GO:0006636 - unsaturated fatty acid biosynthetic process		
11238	LCRN1	OsSPL3, SPL3, OsLCRN1	LOWER CROWN ROOT NUMBER 1	Squamosa promoter-binding-like protein 3, SQUAMOSA Promoter-Binding Protein-Like 3, lower crown root number1	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3	lcrn1	2	A3A2Z8. OsmiR156 target gene.	 Vegetative organ - Root,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Other,  Seed - Physiological traits - Storage substances	Os02g0139400	LOC_Os02g04680.2, LOC_Os02g04680.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0010050 - vegetative phase change, GO:0043565 - sequence-specific DNA binding, GO:0008270 - zinc ion binding, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048364 - root development, GO:0045449 - regulation of transcription	TO:0001013 - lateral root number, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000357 - growth and development trait, TO:0002673 - amino acid content	PO:0005679 - epidermis , PO:0000025 - root tip , PO:0005427 - sclerenchyma , PO:0000252 - endodermis , PO:0020123 - root cap , PO:0025197 - stele , PO:0020127 - primary root , PO:0005772 - exodermis 
11239	SPL5	OsSPL5	RICE SQUAMOSA PROMOTER-BINDING-LIKE 5	Squamosa promoter-binding-like protein 5	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 5		2	Q0E3F8.	 Other	Os02g0177300	LOC_Os02g08070.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription		
11240	SPL6	OsSPL6, DLN106, DLN106a, DLN106b, OsDLN106, OsDLN106a, OsDLN106b	RICE SQUAMOSA PROMOTER-BINDING-LIKE 6	Squamosa promoter-binding-like protein 6, DLN repressor 106, DLN motif protein 106	RICE SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 6		3	Q75LH6.	 Other	Os03g0833300	LOC_Os03g61760.1				GO:0005634 - nucleus, GO:0006350 - transcription, GO:0008270 - zinc ion binding, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding		
11241	SPL17	OsSPL17	RICE SQUAMOSA PROMOTER-BINDING-LIKE 17	Squamosa promoter-binding-like protein 17	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 17	spl17	9	A3C057. TO: inflorescence axis length. TO:0001061: inflorescence axis thickness. TO:0001063: panicle inflorescence internode length. TO:0001062: number of panicle internodes.	 Other,  Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os09g0491532	LOC_Os09g31438.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0006350 - transcription, GO:0010050 - vegetative phase change, GO:0010229 - inflorescence development, GO:0010432 - bract development, GO:0045449 - regulation of transcription, GO:0003677 - DNA binding	TO:0000621 - inflorescence development trait, TO:0000357 - growth and development trait, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000050 - inflorescence branching	PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0025487 - bract primordium 
11242	SPL18	OsSPL18	RICE SQUAMOSA PROMOTER-BINDING-LIKE 18	Squamosa promoter-binding-like protein 18	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 18		9	Q0J0K1. TO:0000975: grain width. PO:0030123: panicle inflorescence. the Candidate Gene of qPL9-6.	 Other,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os09g0507100	LOC_Os09g32944.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0046872 - metal ion binding, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0042127 - regulation of cell proliferation	TO:0002759 - grain number, TO:0000590 - grain weight, TO:0000149 - seed width, TO:0000040 - panicle length, TO:0000399 - grain thickness, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
11243	SPL19	OsSPL19	RICE SQUAMOSA PROMOTER-BINDING-LIKE 19	Squamosa promoter-binding-like protein 19	RICE SQUAMOSA PROMOTER-BINDING-LIKE POTEIN 19		11	Q2R3Y1.	 Other	Os11g0496600	LOC_Os11g30370.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046872 - metal ion binding		
11244	LG2	OsLG2, OsbZIP11, BZIP11	LIGULELESS 2	OsLIGULELESS2, LIGULELESS2, OsLIGULELESS 2, b-ZIP transcription factor 11	b-ZIP TRANSCRIPTION FACTOR 11 	oslg2	1	LOC_Os01g64020. A homologue (LOC_Os01g64020) of ZmLG2 is present in the rice genome. We did not observe the liguleless phenotypes in the T-DNA knockout mutants in the oslg2 homologous gene, perhaps due to genome duplication in rice as well (Lee et al. 2007).	 Other	Os01g0859500	LOC_Os01g64020.1, LOC_Os01g64020.2				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
11245	_	lg1	_	liguleless1			4	AL442117. AF488772.	 Other								
11246	_	OsLP, PR-5, 14b	_	osmotin protein, Osmotin, OsPR5-like			3	an osmotin-like protein. L76377. D15454. alpha-amylase/trypsin inhibitor in Sasaki et al. 1994. PR5/thaumatin.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0663400	LOC_Os03g46060.1				GO:0009817 - defense response to fungus, incompatible interaction, GO:0009651 - response to salt stress	TO:0000095 - osmotic response sensitivity	
11247	NHX4	OsNHX4	NA+/H+ ANTIPORTER 4	Na+/H+ antiporter 4, NHX-type antiporter 4, Sodium/hydrogen antiporter 4	NA+/H+ ANTIPORTER 4		6	Oryza rufipogon: ORUFI06G13400, Oryza nivara: ONIVA06G14580, Oryza barthii: OBART06G12670, Oryza glumipatula: OGLUM06G13560, Oryza punctata: OPUNC06G12060, Oryza brachyantha: OB06G21140.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0318500	LOC_Os06g21360.1				GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0015385 - sodium:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0005773 - vacuole	TO:0006001 - salt tolerance	PO:0020104 - leaf sheath 
11248	GPA6	OsNHX5, NHX5, OsGPA6	GLUTELIN PRECURSOR ACCUMULATION 6	Na+/H+ antiporter 5, NHX-type antiporter 5, glutelin precursor accumulation6, Sodium/hydrogen antiporter 5	NA+/H+ ANTIPORTER 5	gpa6	9	AB531434. AU174198. Oryza sativa subsp. Indica: BGIOSGA030066, Oryza rufipogon: ORUFI09G04390, Oryza meridionalis: OMERI09G03010, Oryza nivara: ONIVA09G04150, Oryza barthii: OBART09G03930, Oryza glumipatula: OGLUM09G04670.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Biochemical character	Os09g0286400	LOC_Os09g11450.1, LOC_Os09g11450.2				GO:0006892 - post-Golgi vesicle-mediated transport, GO:0015031 - protein transport, GO:0009651 - response to salt stress, GO:0015385 - sodium:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0005802 - trans-Golgi network	TO:0000598 - protein content, TO:0006001 - salt tolerance, TO:0000104 - floury endosperm, TO:0002656 - starch grain shape, TO:0000592 - 1000-dehulled grain weight, TO:0000196 - amylose content, TO:0000604 - fat and essential oil content	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009006 - shoot system 
11249	NHX2	OsNHX2	NA+/H+ ANTIPORTER 2	Na+/H+ antiporter 2, NHX-type antiporter 2, Sodium/hydrogen antiporter 2	NA+/H+ ANTIPORTER		11	AB531435. C91861. Oryza sativa subsp. Indica: BGIOSGA027380, Oryza rufipogon: ORUFI11G23040, Oryza meridionalis: OMERI11G17560, Oryza nivara: ONIVA11G21550, Oryza barthii: OBART11G21190, Oryza glumipatula: OGLUM11G20600, Oryza punctata: OPUNC11G17770, Oryza brachyantha: OB11G25980.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0648000	LOC_Os11g42790.1				GO:0009651 - response to salt stress, GO:0005773 - vacuole, GO:0015385 - sodium:hydrogen antiporter activity, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0055078 - sodium ion homeostasis, GO:0055081 - anion homeostasis, GO:0006885 - regulation of pH	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0020104 - leaf sheath , PO:0009005 - root 
11250	MYB1R	OsMyb1R, OsMYB1R, LHY-like_chr.2	_	MYB transcription factor OsMyb1R			2	a rice ortholog of Arabidopsis gene for circadian clock component.	 Tolerance and resistance - Stress tolerance	Os02g0685200	LOC_Os02g46030.1				GO:0003682 - chromatin binding, GO:0007623 - circadian rhythm, GO:0003677 - DNA binding		
11251	RCN11	"Xyl, OsXylT, XylT, RCN11/OsXylT, \"beta1, 2-XylT\""	REDUCED CULM NUMBER 11	"\"beta 1, 2-xylosyltransferase\", reduced culm number11"	BETA 1,2-XYLOSYLTRANSFERASE	rcn11, osxylt	8	AJ621918, AJ621917.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os08g0503800	LOC_Os08g39380.1				GO:0006487 - protein amino acid N-linked glycosylation, GO:0005794 - Golgi apparatus, GO:0031204 - posttranslational protein targeting to membrane, translocation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009845 - seed germination, GO:0009753 - response to jasmonic acid stimulus, GO:0005797 - Golgi medial cisterna, GO:0009733 - response to auxin stimulus, GO:0042285 - xylosyltransferase activity	TO:0000237 - water stress trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000432 - temperature response trait, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage , PO:0006213 - root aerenchyma 
11252	_		_	Xylem Cys proteinase 2			2			Os02g0715000	LOC_Os02g48450.1				GO:0000325 - plant-type vacuole, GO:0008234 - cysteine-type peptidase activity, GO:0010623 - developmental programmed cell death, GO:0005634 - nucleus, GO:0006508 - proteolysis, GO:0005618 - cell wall		
11253	NDART1-0	nDART1-0	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-0	non-autonomous DNA-based active rice transposon 1-0			3		 Other						GO:0032196 - transposition		
11254	NDART1-1	nDART1-1	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-1	non-autonomous DNA-based active rice transposon 1-1			9		 Other						GO:0032196 - transposition		
11255	NDART1-2	nDART1-2	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-2	non-autonomous DNA-based active rice transposon 1-2			12		 Other						GO:0032196 - transposition		
11256	NDART1-3(3-1)	nDART1-3(3-1)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(3-1)	non-autonomous DNA-based active rice transposon 1-3(3-1)			3		 Other						GO:0032196 - transposition		
11257	NDART1-3(3-2)	nDART1-3(3-2)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(3-2)	non-autonomous DNA-based active rice transposon 1-3(3-2)			3		 Other						GO:0032196 - transposition		
11258	NDART1-3(6)	nDART1-3(6)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(6)	non-autonomous DNA-based active rice transposon 1-3(6)			6		 Other						GO:0032196 - transposition		
11259	NDART1-3(8)	nDART1-3(8)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-3(8)	non-autonomous DNA-based active rice transposon 1-3(8)			8		 Other						GO:0032196 - transposition		
11260	NDART1-5	nDART1-5	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-5	non-autonomous DNA-based active rice transposon 1-5			3		 Other						GO:0032196 - transposition		
11261	NDART1-6	nDART1-6	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-6	non-autonomous DNA-based active rice transposon 1-6			2		 Other						GO:0032196 - transposition		
11262	NDART1-7	nDART1-7	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-7	non-autonomous DNA-based active rice transposon 1-7			4		 Other						GO:0032196 - transposition		
11263	NDART1-9	nDART1-9	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-9	non-autonomous DNA-based active rice transposon 1-9			2		 Other						GO:0032196 - transposition		
11264	NDART1-10	nDART1-10	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-10	non-autonomous DNA-based active rice transposon 1-10			5		 Other						GO:0032196 - transposition		
11265	NDART1-11	nDART1-11	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-11	non-autonomous DNA-based active rice transposon 1-11			3		 Other						GO:0032196 - transposition		
11266	NDART1-12	nDART1-12	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-12	non-autonomous DNA-based active rice transposon 1-12			1		 Other						GO:0032196 - transposition		
11267	ADART1-27	aDart1-27	AUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-27				6		 Other						GO:0032196 - transposition		
11268	DART1-1	Dart1-1	DNA-BASED ACTIVE RICE TRANSPOSON 1-1				10		 Other						GO:0032196 - transposition		
11269	DART1-2	Dart1-2	DNA-BASED ACTIVE RICE TRANSPOSON 1-2				12		 Other						GO:0032196 - transposition		
11270	DART1-13	Dart1-13	DNA-BASED ACTIVE RICE TRANSPOSON 1-13				10		 Other						GO:0032196 - transposition		
11271	DART1-16	Dart1-16	DNA-BASED ACTIVE RICE TRANSPOSON 1-16				6		 Other						GO:0032196 - transposition		
11272	DART1-19	Dart1-19	DNA-BASED ACTIVE RICE TRANSPOSON 1-19				1		 Other						GO:0032196 - transposition		
11273	DART1-27	Dart1-27	DNA-BASED ACTIVE RICE TRANSPOSON 1-27				6		 Other						GO:0032196 - transposition		
11274	DART1-28	Dart1-28	DNA-BASED ACTIVE RICE TRANSPOSON 1-28				11		 Other						GO:0032196 - transposition		
11275	DART1-34	Dart1-34	DNA-BASED ACTIVE RICE TRANSPOSON 1-34				11		 Other						GO:0032196 - transposition		
11276	DART1-38	Dart1-38	DNA-BASED ACTIVE RICE TRANSPOSON 1-38				11		 Other						GO:0032196 - transposition		
11277	_	CKI	_	casein kinase I, Casein Kinase I-Like Protein			1	AP003273, BAB92346.1.	 Biochemical character						GO:0005737 - cytoplasm, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0005634 - nucleus, GO:0005524 - ATP binding		
11278	_	OsHOL1	_	HARMLESS TO OZONE LAYER 1			3	CT835256.	 Biochemical character	Os03g0843800	LOC_Os03g62670.1, LOC_Os03g62670.2, LOC_Os03g62670.3				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity		
11279	_	OsHOL2	_	HARMLESS TO OZONE LAYER 2			6		 Biochemical character	Os06g0153900	LOC_Os06g06040.1, LOC_Os06g06040.2, LOC_Os06g06040.3, LOC_Os06g06040.4, LOC_Os06g06040.5, LOC_Os06g06040.6, LOC_Os06g06040.7				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009941 - chloroplast envelope, GO:0005886 - plasma membrane		
11280	NDART(l)1-5	nDart(l)1-5	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-5	non-autonomous DNA-based active rice transposon (I) 1-5			3		 Other						GO:0032196 - transposition		
11281	NDART(l)1-21	nDart(l)1-21	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-21	non-autonomous DNA-based active rice transposon (I) 1-21			1		 Other						GO:0032196 - transposition		
11282	NDART(l)1-22	nDart(l)1-22	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-22	non-autonomous DNA-based active rice transposon (I) 1-22			12		 Other						GO:0032196 - transposition		
11283	NDART(l)1-23	nDart(l)1-23	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-23	non-autonomous DNA-based active rice transposon (I) 1-23			6		 Other						GO:0032196 - transposition		
11284	NDART(l)1-24	nDart(l)1-24	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-24	non-autonomous DNA-based active rice transposon (I) 1-24			2		 Other						GO:0032196 - transposition		
11285	NDART(l)1-25	nDart(l)1-25	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-25	non-autonomous DNA-based active rice transposon (I) 1-25			1		 Other						GO:0032196 - transposition		
11286	NDART(l)1-26	nDart(l)1-26	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON (l) 1-26	non-autonomous DNA-based active rice transposon (I) 1-26			11		 Other						GO:0032196 - transposition		
11287	NDART1-101	nDart1-101	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-101	non-autonomous DNA-based active rice transposon 1-101			7		 Other						GO:0032196 - transposition		
11288	NDART1-102	nDart1-102	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-102	non-autonomous DNA-based active rice transposon 1-102			1		 Other						GO:0032196 - transposition		
11289	NDART1-103	nDart1-103	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-103	non-autonomous DNA-based active rice transposon 1-103			10		 Other						GO:0032196 - transposition		
11290	NDART1-104	nDart1-104	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-104	non-autonomous DNA-based active rice transposon 1-104			6		 Other						GO:0032196 - transposition		
11291	NDART1-201	nDart1-201	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-201	non-autonomous DNA-based active rice transposon 1-201			12		 Other						GO:0032196 - transposition		
11292	_	OsRPK1, OsJNipponRPK1, OsI219RPK1, OsI9311RPK1	_	receptor-like protein kinase 1			1	GI:53792194, GI:380710172, GI:218188631.	 Biochemical character	Os01g0607900	LOC_Os01g42294.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
11293	_	OsJ_RLL1	_				5	a leucine rich repeat receptor-like kinase. GI:47777361.	 Biochemical character	Os05g0588250	LOC_Os05g51070.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
11294	AGP1	OsAGP1	ARABINOGALACTAN PROTEIN 1	Arabinogalactan protein 1	ARABINOGALACTAN PROTEIN 1		8	Q6Z232. EU282461. GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os08g0482300	LOC_Os08g37630.1				GO:0009737 - response to abscisic acid stimulus, GO:0031225 - anchored to membrane, GO:0032578 - aleurone grain membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0005773 - vacuole, GO:0008585 - female gonad development	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait	PO:0009072 - plant ovary , PO:0009010 - seed , PO:0009073 - stigma , PO:0001083 - inflorescence development stage 
11295	AGP2	OsAGP2	ARABINOGALACTAN PROTEIN 2	Arabinogalactan protein 2	ARABINOGALACTAN PROTEIN 2		1	LOC_Os01g71170.	 Tolerance and resistance - Stress tolerance	Os01g0937900	LOC_Os01g71170.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11296	AGP3	OsAGP3	ARABINOGALACTAN PROTEIN 3	Arabinogalactan protein 3	ARABINOGALACTAN PROTEIN 3		3	up-regulated after fertilization (Abiko et al. 2013).	 Tolerance and resistance - Stress tolerance	Os03g0188500					GO:0009790 - embryonic development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
11297	AGP4	OsAGP4	ARABINOGALACTAN PROTEIN 4	Arabinogalactan protein 4	ARABINOGALACTAN PROTEIN 4		4	LOC_Os04g37770.		Os04g0450701	LOC_Os04g37770.1						
11298	AGP5	OsAGP5	ARABINOGALACTAN PROTEIN 5	Arabinogalactan protein 5	ARABINOGALACTAN PROTEIN 5		4			Os04g0545250							
11299	AGP6	OsAGP6	ARABINOGALACTAN PROTEIN 6	Arabinogalactan protein 6	ARABINOGALACTAN PROTEIN 6		5	LOC_Os05g37110.		Os05g0443200	LOC_Os05g37110.1						
11300	AGP7	OsAGP7	ARABINOGALACTAN PROTEIN 7	Arabinogalactan protein 7	ARABINOGALACTAN PROTEIN 7		6	PO:0030123: panicle inflorescence.		Os06g0284900	LOC_Os06g17450.1						PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009010 - seed 
11301	AGP8	OsAGP8	ARABINOGALACTAN PROTEIN 8	Arabinogalactan protein 8	ARABINOGALACTAN PROTEIN 8		7	LOC_Os07g28660. Os07g0469800 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os07g28660						
11302	AGP9	OsAGP9	ARABINOGALACTAN PROTEIN 9	Arabinogalactan protein 9	ARABINOGALACTAN PROTEIN 9		10			Os10g0377150							
11303	AGP10	OsAGP10	ARABINOGALACTAN PROTEIN 10	Arabinogalactan protein 10	ARABINOGALACTAN PROTEIN 10		8	LOC_Os08g38250.		Os08g0490400	LOC_Os08g38250.1						
11304	AGP11	OsAGP11	ARABINOGALACTAN PROTEIN 11	Arabinogalactan protein 11	ARABINOGALACTAN PROTEIN 11		4	Os04g0492200 (in Rap3 (build5)). LOC_Os04g41480.			LOC_Os04g41480						
11305	AGP12	OsAGP12	ARABINOGALACTAN PROTEIN 12	Arabinogalactan protein 12	ARABINOGALACTAN PROTEIN 12		1	LOC_Os01g02010.		Os01g0110200	LOC_Os01g02010.1						
11306	AGP13	OsAGP13	ARABINOGALACTAN PROTEIN 13	Arabinogalactan protein 13	ARABINOGALACTAN PROTEIN 13		7	Os07g0590800 (in Rap1 (build3)). LOC_Os07g40130.		Os07g0590700	LOC_Os07g40130.1						PO:0009049 - inflorescence , PO:0008016 - vegetative shoot apical meristem 
11307	AGP14	OsAGP14, OsAGPEP2	ARABINOGALACTAN PROTEIN 14	Arabinogalactan protein 14, arabinogalactan peptide 2	ARABINOGALACTAN PROTEIN 14		1	A9UGV6. EU282463. LOC_Os01g37950.		Os01g0559900	LOC_Os01g37950.1				GO:0031225 - anchored to membrane, GO:0032578 - aleurone grain membrane, GO:0005773 - vacuole		
11308	AGP15	OsAGP15	ARABINOGALACTAN PROTEIN 15	Arabinogalactan protein 15	ARABINOGALACTAN PROTEIN 15		1	LOC_Os01g40950.	 Tolerance and resistance - Stress tolerance	Os01g0592500	LOC_Os01g40950.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0009047 - stem , PO:0025034 - leaf , PO:0009010 - seed 
11309	AGP16	OsAGP16	ARABINOGALACTAN PROTEIN 16	Arabinogalactan protein 16	ARABINOGALACTAN PROTEIN 16		1	LOC_Os01g46850.aPO:0030123: panicle inflorescence.		Os01g0657000	LOC_Os01g46850.1				GO:0009555 - pollen development		PO:0009066 - anther , PO:0009049 - inflorescence , PO:0001007 - pollen development stage , PO:0009073 - stigma 
11310	AGP17	OsAGP17	ARABINOGALACTAN PROTEIN 17	Arabinogalactan protein 17	ARABINOGALACTAN PROTEIN 17		1	LOC_Os01g55220.		Os01g0756900	LOC_Os01g55220.1						PO:0008016 - vegetative shoot apical meristem 
11311	AGP18	OsAGP18	ARABINOGALACTAN PROTEIN 18	Arabinogalactan protein 18	ARABINOGALACTAN PROTEIN 18		1	LOC_Os01g57030. Os01g0778300 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os01g57030						
11312	AGP19	OsAGP19, OsAGPEP1	ARABINOGALACTAN PROTEIN 19	Arabinogalactan protein 19, arabinogalactan peptide 1	ARABINOGALACTAN PROTEIN 19		1	A9UGV5. EU282462. LOC_Os01g57040.		Os01g0778400	LOC_Os01g57040.1				GO:0005773 - vacuole, GO:0031225 - anchored to membrane, GO:0032578 - aleurone grain membrane		PO:0009047 - stem 
11313	AGP20	OsAGP20	ARABINOGALACTAN PROTEIN 20	Arabinogalactan protein 20	ARABINOGALACTAN PROTEIN 20		2	LOC_Os02g16500.	 Tolerance and resistance - Stress tolerance	Os02g0264800	LOC_Os02g16500.1				GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity	PO:0008016 - vegetative shoot apical meristem 
11314	AGP21	OsAGP21	ARABINOGALACTAN PROTEIN 21	Arabinogalactan protein 21	ARABINOGALACTAN PROTEIN 21		2	LOC_Os02g48710.		Os02g0718600	LOC_Os02g48710.1						
11315	AGP22	OsAGP22	ARABINOGALACTAN PROTEIN 22	Arabinogalactan protein 22	ARABINOGALACTAN PROTEIN 22		2			Os02g0718100							
11316	AGP23	OsAGP23	ARABINOGALACTAN PROTEIN 23	Arabinogalactan protein 23	ARABINOGALACTAN PROTEIN 23		5	LOC_Os05g12580.	 Tolerance and resistance - Stress tolerance	Os05g0217000	LOC_Os05g12580.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11317	AGP24	OsAGP24	ARABINOGALACTAN PROTEIN 24	Arabinogalactan protein 24	ARABINOGALACTAN PROTEIN 24		6	LOC_Os06g21400.	 Tolerance and resistance - Stress tolerance	Os06g0318800					GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
11318	AGP25	OsAGP25	ARABINOGALACTAN PROTEIN 25	Arabinogalactan protein 25	ARABINOGALACTAN PROTEIN 25		6	LOC_Os06g21410.	 Tolerance and resistance - Stress tolerance	Os06g0318900					GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0009005 - root , PO:0009049 - inflorescence 
11319	AGP26	OsAGP26	ARABINOGALACTAN PROTEIN 26	Arabinogalactan protein 26	ARABINOGALACTAN PROTEIN 26		6	LOC_Os06g30920.		Os06g0505700	LOC_Os06g30920.1						
11320	AGP27	OsAGP27	ARABINOGALACTAN PROTEIN 27	Arabinogalactan protein 27	ARABINOGALACTAN PROTEIN 27		7	LOC_Os07g38630. GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0573900	LOC_Os07g38630.1				GO:0009555 - pollen development, GO:0008585 - female gonad development, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001007 - pollen development stage , PO:0009073 - stigma , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
11321	AGP28	OsAGP28	ARABINOGALACTAN PROTEIN 28	Arabinogalactan protein 28	ARABINOGALACTAN PROTEIN 28		5	chromosome location: Chr5:26814680, 26815094.									
11322	AGP29	OsAGP29	ARABINOGALACTAN PROTEIN 29	Arabinogalactan protein 29	ARABINOGALACTAN PROTEIN 29		1	LOC_Os01g42210.		Os01g0607100	LOC_Os01g42210.1				GO:0016021 - integral to membrane		
11323	AGP30	OsAGP30, DLN50, OsDLN50	ARABINOGALACTAN PROTEIN 30	Arabinogalactan protein 30, DLN repressor 50, DLN motif protein 50	ARABINOGALACTAN PROTEIN 30		2	GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Seed,  Reproductive organ - Inflorescence	Os02g0196100	LOC_Os02g10240.1				GO:0048316 - seed development, GO:0003676 - nucleic acid binding, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0008585 - female gonad development, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0009073 - stigma , PO:0001170 - seed development stage 
11324	AGP31	OsAGP31, OsGP1, GP1	ARABINOGALACTAN PROTEIN 31	Arabinogalactan protein 31	ARABINOGALACTAN PROTEIN 31		3	Hydroxyproline-rich glycoprotein (HRGP) family. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os03g0852400	LOC_Os03g63540.1				GO:0009651 - response to salt stress, GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis, GO:0010446 - response to alkalinity, GO:0005618 - cell wall, GO:0016020 - membrane, GO:0019725 - cellular homeostasis	TO:0000481 - alkali sensitivity, TO:0006001 - salt tolerance, TO:0000143 - relative biomass, TO:0001034 - relative plant height	PO:0009049 - inflorescence 
11328	_	OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1	_	non-specific lipid transfer protein-like AGP 1, non-specific lipid transfer protein-like arabinogalactan protein 1, GPI-anchored non-specific lipid transfer protein 6, type G nsLTP 6, type G non-specific lipid transfer protein 6, non-specific lipid transfer protein-like protein 1			3	Q6ASY2. EU282465. LOC_Os03g26820.		Os03g0385400	LOC_Os03g26820.1				GO:0005773 - vacuole, GO:0032578 - aleurone grain membrane, GO:0008289 - lipid binding, GO:0008233 - peptidase activity, GO:0006869 - lipid transport, GO:0006508 - proteolysis, GO:0031225 - anchored to membrane		
11329	_	OsLLA2, OsLTPG27, LLA2, LTPG27	_	non-specific lipid transfer protein-like AGP 2, non-specific lipid transfer protein-like arabinogalactan protein 2, GPI-anchored non-specific lipid transfer protein 27, type G nsLTP 27			3	LOC_Os03g46180.		Os03g0664600	LOC_Os03g46180.1				GO:0006508 - proteolysis, GO:0006869 - lipid transport, GO:0008233 - peptidase activity		PO:0009005 - root 
11330	_	OsLLA3, LLA3, OsHyPRP15, HyPRP15	_	non-specific lipid transfer protein-like AGP 3, non-specific lipid transfer protein-like arabinogalactan protein 3, Hybrid Proline-Rich Protein 15			4	Os04g0612300 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Disease resistance		LOC_Os04g52250.1				GO:0050832 - defense response to fungus, GO:0006869 - lipid transport	TO:0000074 - blast disease	
11331	_	OsLLA4, LLA4, OsHyPRP20, HyPRP20	_	non-specific lipid transfer protein-like AGP 4, non-specific lipid transfer protein-like arabinogalactan protein 4, Hybrid Proline-Rich Protein 20			6	Os06g0681500 (in RAP2 (build4)).			LOC_Os06g46780.1				GO:0006869 - lipid transport		
11332	_	OsLLA5, LLA5, OsHyPRP21, HyPRP21	_	non-specific lipid transfer protein-like AGP 5, non-specific lipid transfer protein-like arabinogalactan protein 5, Hybrid Proline-Rich Protein 21			6			Os06g0682750	LOC_Os06g46870.1				GO:0003723 - RNA binding, GO:0006869 - lipid transport, GO:0006396 - RNA processing		
11333	_	OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14	_	non-specific lipid transfer protein-like AGP 6, non-specific lipid transfer protein-like arabinogalactan protein 6, GPI-anchored non-specific lipid transfer protein 14, type G nsLTP 14, type G non-specific lipid transfer protein 14			7	LOC_Os07g07790.		Os07g0174400	LOC_Os07g07790.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		
11334	_	OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21, OsHyPRP25, HyPRP25	_	non-specific lipid transfer protein-like AGP 7, non-specific lipid transfer protein-like arabinogalactan protein 7, GPI-anchored non-specific lipid transfer protein 21, type G nsLTP 21, type G non-specific lipid transfer protein 21, Hybrid Proline-Rich Protein 25			7	LOC_Os07g43290.2 as OsHyPRP25 in Kapoor et al. 2019.	 Tolerance and resistance - Disease resistance	Os07g0625800	LOC_Os07g43290.2, LOC_Os07g43290.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	PO:0009005 - root 
11335	_	OsLLA8, LLA8, OsHyPRP27, HyPRP27	_	non-specific lipid transfer protein-like AGP 8, non-specific lipid transfer protein-like arabinogalactan protein 8, Hybrid Proline-Rich Protein 27			10			Os10g0191100	LOC_Os10g11370.1				GO:0006508 - proteolysis, GO:0006869 - lipid transport, GO:0008233 - peptidase activity		
11336	FLA1	OsFLA1	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1	fasciclin-like AGP 1, fasciclin-like arabinogalactan protein 1	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1		4	LOC_Os04g48490.	 Tolerance and resistance - Stress tolerance	Os04g0574200	LOC_Os04g48490.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
11337	FLA2	OsFLA2	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2	fasciclin-like AGP 2, fasciclin-like arabinogalactan protein 2	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2		3	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.		Os03g0128000	LOC_Os03g03600.1				GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis		PO:0008016 - vegetative shoot apical meristem , PO:0009049 - inflorescence 
11338	FLA3	OsFLA3	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3	fasciclin-like AGP 3, fasciclin-like arabinogalactan protein 3	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3		8	LOC_Os08g23180.		Os08g0321000	LOC_Os08g23180.1						
11339	FLA4	OsFLA4	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4	fasciclin-like AGP 4, fasciclin-like arabinogalactan protein 4	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4		8	LOC_Os08g38270.	 Tolerance and resistance - Stress tolerance	Os08g0490600	LOC_Os08g38270.1				GO:0009409 - response to cold, GO:0009556 - microsporogenesis, GO:0009554 - megasporogenesis	TO:0000303 - cold tolerance	PO:0009049 - inflorescence , PO:0009073 - stigma 
11340	FLA5	OsFLA5	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5	fasciclin-like AGP 5, fasciclin-like arabinogalactan protein 5	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5		8	LOC_Os08g39270.	 Tolerance and resistance - Stress tolerance	Os08g0502400	LOC_Os08g39270.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11341	FLA6	OsFLA6	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6	fasciclin-like AGP 6, fasciclin-like arabinogalactan protein 6	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6		5	LOC_Os05g48900.		Os05g0563600	LOC_Os05g48900.1						
11342	FLA7	OsFLA7	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7	fasciclin-like AGP 7, fasciclin-like arabinogalactan protein 7	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7		1	LOC_Os01g47780. GO:0035670: plant-type ovary development. TO:0020111: ovary development trait.	 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0668100	LOC_Os01g47780.1				GO:0010229 - inflorescence development, GO:0008585 - female gonad development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009073 - stigma 
11343	FLA8	OsFLA8	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8	fasciclin-like AGP 8, fasciclin-like arabinogalactan protein 8	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8		1	LOC_Os01g06580.		Os01g0159200	LOC_Os01g06580.1						PO:0009049 - inflorescence , PO:0009066 - anther 
11344	FLA9	OsFLA9	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9	fasciclin-like AGP 9, fasciclin-like arabinogalactan protein 9	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9		5	LOC_Os05g07060.		Os05g0163300	LOC_Os05g07060.1						
11345	FLA10	OsFLA10	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10	fasciclin-like AGP 10, fasciclin-like arabinogalactan protein 10	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10		9	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.		Os09g0476800	LOC_Os09g30010.1						
11346	FLA11	OsFLA11	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11	fasciclin-like AGP 11, fasciclin-like arabinogalactan protein 11	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11		9	LOC_Os09g07350.		Os09g0248100	LOC_Os09g07350.1				GO:0046658 - anchored to plasma membrane, GO:0009556 - microsporogenesis, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009554 - megasporogenesis	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009073 - stigma , PO:0009049 - inflorescence 
11347	FLA12	OsFLA12	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12	fasciclin-like AGP 12, fasciclin-like arabinogalactan protein 12	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12		1	LOC_Os01g62380.		Os01g0841100	LOC_Os01g62380.1, LOC_Os01g62380.2						
11348	FLA13	OsFLA13	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13	fasciclin-like AGP 13, fasciclin-like arabinogalactan protein 13	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13		4	LOC_Os04g39600.		Os04g0472200	LOC_Os04g39600.1						
11349	FLA14	OsFLA14	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14	fasciclin-like AGP 14, fasciclin-like arabinogalactan protein 14	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14		4	LOC_Os04g39590.		Os04g0472100	LOC_Os04g39590.1				GO:0009555 - pollen development		PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
11350	FLA15	OsFLA15	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15	fasciclin-like AGP 15, fasciclin-like arabinogalactan protein 15	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15		2	LOC_Os02g20560.		Os02g0308800	LOC_Os02g20560.1				GO:0009555 - pollen development		PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
11351	FLA16	OsFLA16	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16	fasciclin-like AGP 16, fasciclin-like arabinogalactan protein 16	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16		7	LOC_Os07g06680.		Os07g0160600	LOC_Os07g06680.1				GO:0005773 - vacuole		PO:0009066 - anther , PO:0009049 - inflorescence 
11352	FLA17	OsFLA17	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17	fasciclin-like AGP 17, fasciclin-like arabinogalactan protein 17	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17		3	LOC_Os03g57490.	 Reproductive organ - Inflorescence	Os03g0788700	LOC_Os03g57490.1, LOC_Os03g57490.2				GO:0009554 - megasporogenesis, GO:0010229 - inflorescence development, GO:0009556 - microsporogenesis, GO:0005773 - vacuole	TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
11353	FLA18	OsFLA18	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18	fasciclin-like AGP 18, fasciclin-like arabinogalactan protein 18	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18		5	LOC_Os05g48890.	 Tolerance and resistance - Stress tolerance	Os05g0563550	LOC_Os05g48890.1				GO:0009414 - response to water deprivation, GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009073 - stigma , PO:0009049 - inflorescence 
11354	FLA19	OsFLA19	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19	fasciclin-like AGP 19, fasciclin-like arabinogalactan protein 19	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19		2		 Tolerance and resistance - Stress tolerance	Os02g0308400	LOC_Os02g20540.2, LOC_Os02g20540.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath 
11355	FLA20	OsFLA20	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20	fasciclin-like AGP 20, fasciclin-like arabinogalactan protein 20	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20		2	LOC_Os02g26320.		Os02g0461500	LOC_Os02g26320.1						
11356	FLA21	OsFLA21	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21	fasciclin-like AGP 21, fasciclin-like arabinogalactan protein 21	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21		2	LOC_Os02g49420.		Os02g0726000	LOC_Os02g49420.1						
11357	FLA22	OsFLA22	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 22	fasciclin-like AGP 22, fasciclin-like arabinogalactan protein 22	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 22		2	LOC_Os02g26290.		Os02g0461000	LOC_Os02g26290.1						PO:0009049 - inflorescence , PO:0009066 - anther 
11358	FLA23	OsFLA23	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 23	fasciclin-like AGP 23, fasciclin-like arabinogalactan protein 23	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 23		6	LOC_Os06g17460.		Os06g0285100	LOC_Os06g17460.1						
11359	FLA24	OsFLA24	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 24	fasciclin-like AGP 24, fasciclin-like arabinogalactan protein 24	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 24		3	LOC_Os03g57460.		Os03g0788600	LOC_Os03g57460.1				GO:0009556 - microsporogenesis, GO:0005773 - vacuole, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009554 - megasporogenesis	TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0009049 - inflorescence 
11360	FLA25	OsFLA25	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 25	fasciclin-like AGP 25, fasciclin-like arabinogalactan protein 25	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 25		6	LOC_Os06g44660.		Os06g0656800	LOC_Os06g44660.1				GO:0009555 - pollen development		PO:0009073 - stigma , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0001007 - pollen development stage 
11361	FLA26	OsFLA26	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 26	fasciclin-like AGP 26, fasciclin-like arabinogalactan protein 26	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 26		5	LOC_Os05g38500.		Os05g0459700	LOC_Os05g38500.1						
11362	FLA27	OsFLA27	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27	fasciclin-like AGP 27, fasciclin-like arabinogalactan protein 27	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27		9	LOC_Os09g30486.	 Tolerance and resistance - Stress tolerance	Os09g0482780	LOC_Os09g30486.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009066 - anther 
11363	SK1	OsSK1	SHIKIMATE KINASE 1	Shikimate kinase 1, Shikimate kinase	SHIKIMATE KINASE 1		2	AB188834. Q5NTH4. AU175176, AU176556.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0749300	LOC_Os02g51410.1, LOC_Os02g51410.2, LOC_Os02g51410.3				GO:0019632 - shikimate metabolic process, GO:0046872 - metal ion binding, GO:0009411 - response to UV, GO:0009507 - chloroplast, GO:0009423 - chorismate biosynthetic process, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0005524 - ATP binding, GO:0004765 - shikimate kinase activity	TO:0000432 - temperature response trait, TO:0000160 - UV light sensitivity	
11364	SK2	OsSK2	SHIKIMATE KINASE 2	Shikimate kinase 2	SHIKIMATE KINASE 2		6	AB188835. Q5NTH3.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0225800	LOC_Os06g12150.1, LOC_Os06g12150.2				GO:0005524 - ATP binding, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009423 - chorismate biosynthetic process, GO:0009411 - response to UV, GO:0009507 - chloroplast, GO:0019632 - shikimate metabolic process, GO:0046872 - metal ion binding, GO:0004765 - shikimate kinase activity	TO:0000160 - UV light sensitivity	
11365	SK3	OsSK3	SHIKIMATE KINASE 3	Shikimate kinase 3	SHIKIMATE KINASE 3		4	AB188836. Q7X7H9. LOC_Os04g54800. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character	Os04g0640600	LOC_Os04g54800.3, LOC_Os04g54800.2, LOC_Os04g54800.1				GO:0019632 - shikimate metabolic process, GO:0004765 - shikimate kinase activity, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus, GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0009423 - chorismate biosynthetic process, GO:0005524 - ATP binding, GO:0009073 - aromatic amino acid family biosynthetic process		PO:0025025 - root system 
11366	SK4	OsSK4, OsSKL1	SHIKIMATE KINASE 4	Shikimate kinase 4	SHIKIMATE KINASE 4		1		 Biochemical character	Os01g0102600	LOC_Os01g01302.1				GO:0004765 - shikimate kinase activity, GO:0005524 - ATP binding		
11367	_	OsSWIB	_	SWIB complex BAF60b domain-containing protein			4			Os04g0382100	LOC_Os04g31320.1				GO:0048364 - root development		
11368	SWI3C	OsSWI3C, OsCHB705, CHB705, OsSWI3C1, SWI3C1	_	SWIRM domain-containing protein OsSWI3C, SWITCH/SUCROSE NONFERMENTING (SWI/SNF) chromatin remodelling complex subunit 3C			11	a putative rice SWI/SNF CRC component.	 Tolerance and resistance - Stress tolerance	Os11g0183700	LOC_Os11g08080.1, LOC_Os11g08080.2				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0003682 - chromatin binding	TO:0000276 - drought tolerance	
11369	LTI6A	OsLti6a, Lti6a, OsLTI6A, OsRCI2-10	LOW TEMPERATURE INDUCED GENE 6A	low temperature-induced low molecular weight integral membrane protein LTI6a, low temperature induced gene 6a, rare cold-inducible 2-10	LOW TEMPERATURE INDUCED PROTEIN 6A		7	AY607689. Q8H5T6. RCI2 (rare cold-inducible 2) family gene. 	 Tolerance and resistance - Stress tolerance	Os07g0635900	LOC_Os07g44180.1	GR:0101182			GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0055078 - sodium ion homeostasis, GO:0005886 - plasma membrane, GO:0042538 - hyperosmotic salinity response, GO:0055075 - potassium ion homeostasis, GO:0009409 - response to cold, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress	TO:0002677 - brassinosteroid sensitivity, TO:0000303 - cold tolerance	
11370	LTI6B	OsLti6b, Lti6b, OsLTI6B, OsRCI2-6	LOW TEMPERATURE INDUCED GENE 6B	low temperature-induced low molecular weight integral membrane protein LTI6b, low temperature induced gene 6b, low temperature and salt responsive protein LTI6B, rare cold-inducible 2-6	LOW TEMPERATURE INDUCED PROTEIN 6B		5	AY607690. Q0DKW8. EB687546. D40768, AU174271. RCI2 (rare cold-inducible 2) family gene. 	 Tolerance and resistance - Stress tolerance	Os05g0138300	LOC_Os05g04700.1				GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane, GO:0042538 - hyperosmotic salinity response, GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis	TO:0000432 - temperature response trait, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
11371	BHLH10	OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116, OsMYC3, MYC3	BASIC HELIX-LOOP-HELIX PROTEIN 10	inducer of CBF expression 1, basic helix-loop-helix protein 010, OsMYC2-like protein 1, MYC2-like protein 1, Myelocytomatosis oncogene transcription factor 3	BASIC HELIX-LOOP-HELIX PROTEIN 10	Osmyc3, Osmyc3-1, Osmyc3-12	1	bHLH116 in Katsuragi et al. 2015. OsMYC3 in Li et al 2021, Tan et al. 2022.	 Tolerance and resistance,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os01g0705700 	LOC_Os01g50940.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0051607 - defense response to virus, GO:0009741 - response to brassinosteroid stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0006952 - defense response, GO:0046983 - protein dimerization activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000227 - root length, TO:0000276 - drought tolerance, TO:0000236 - crop damage resistance, TO:0000303 - cold tolerance, TO:0000179 - biotic stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000148 - viral disease resistance, TO:0000205 - white-backed planthopper resistance	
11372	PAP1A	OsPAP1a, NPP3, OsNPP3	PURPLE ACID PHOSPHATASE 1A	purple acid phosphatase 1a, Nucleotide pyrophosphatase/phosphodiesterase 3	PURPLE ACID PHOSPHATASE 1A		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0214000	LOC_Os03g11530.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11373	PAP1B	OsPAP1b, NPP2, OsNPP2	PURPLE ACID PHOSPHATASE 1B	purple acid phosphatase 1b, Nucleotide pyrophosphatase/phosphodiesterase 2	PURPLE ACID PHOSPHATASE 1B		12	AB196673.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0576750	LOC_Os12g38770.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11374	PAP1C	OsPAP1c, NPP4, OsNPP4	PURPLE ACID PHOSPHATASE 1C	purple acid phosphatase 1c, Nucleotide pyrophosphatase/phosphodiesterase 4	PURPLE ACID PHOSPHATASE 1C		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0576700	LOC_Os12g38760.1, LOC_Os12g38760.2				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11375	PAP1D	OsPAP1d, NPP5, OsNPP5	PURPLE ACID PHOSPHATASE 1D	purple acid phosphatase 1d, Nucleotide pyrophosphatase/phosphodiesterase 5	PURPLE ACID PHOSPHATASE 1D		12	LOC_Os12g38750.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0576600	LOC_Os12g38750.1, LOC_Os12g38750.2				GO:0016036 - cellular response to phosphate starvation, GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding	TO:0000102 - phosphorus sensitivity	
11376	PAP3A	OsPAP3a	PURPLE ACID PHOSPHATASE 3A	purple acid phosphatase 3a	PURPLE ACID PHOSPHATASE 3A		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0549615	LOC_Os11g34710.1				GO:0016311 - dephosphorylation, GO:0003993 - acid phosphatase activity, GO:0005773 - vacuole, GO:0030643 - cellular phosphate ion homeostasis, GO:0042542 - response to hydrogen peroxide		
11377	PAP3B	OsPAP3b	PURPLE ACID PHOSPHATASE 3B	purple acid phosphatase 3b	PURPLE ACID PHOSPHATASE 3B		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0116800	LOC_Os10g02750.1				GO:0016311 - dephosphorylation, GO:0016036 - cellular response to phosphate starvation, GO:0005773 - vacuole, GO:0003993 - acid phosphatase activity, GO:0042542 - response to hydrogen peroxide, GO:0030643 - cellular phosphate ion homeostasis		
11378	PAP3C	OsPAP3c	PURPLE ACID PHOSPHATASE 3C	purple acid phosphatase 3c	PURPLE ACID PHOSPHATASE 3C		3	LOC_Os03g13540.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Biochemical character	Os03g0238600	LOC_Os03g13540.1				GO:0016036 - cellular response to phosphate starvation, GO:0003993 - acid phosphatase activity, GO:0005773 - vacuole, GO:0006817 - phosphate transport, GO:0042542 - response to hydrogen peroxide, GO:0016311 - dephosphorylation, GO:0030643 - cellular phosphate ion homeostasis	TO:0000102 - phosphorus sensitivity, TO:0002661 - seed maturation	
11379	PAP7	OsPAP7	PURPLE ACID PHOSPHATASE 7	purple acid phosphatase 7	PURPLE ACID PHOSPHATASE 7		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0549620	LOC_Os11g34720.1				GO:0016311 - dephosphorylation, GO:0003993 - acid phosphatase activity, GO:0030643 - cellular phosphate ion homeostasis, GO:0005773 - vacuole, GO:0042542 - response to hydrogen peroxide		
11380	PAP9A	OsPAP9a	PURPLE ACID PHOSPHATASE 9A	purple acid phosphatase 9a	PURPLE ACID PHOSPHATASE 9A		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0111600	LOC_Os07g02090.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding, GO:0009507 - chloroplast		
11381	PAP9B	OsPAP9b	PURPLE ACID PHOSPHATASE 9B	purple acid phosphatase 9b	PURPLE ACID PHOSPHATASE 9B		1		 Biochemical character,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os01g0800500	LOC_Os01g58640.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity, TO:0002661 - seed maturation	
11382	PAP10A	OsPAP10a, PAP10, OsPAP2, PAP2	PURPLE ACID PHOSPHATASE 10A	purple acid phosphatase 10a	PURPLE ACID PHOSPHATASE 10A		1	a phosphatase implicated in Pi recycling. PAP10 in Zhao et al. 2016. OsPAP2 in Zhang et al. 2023.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0776600	LOC_Os01g56880.2, LOC_Os01g56880.1				GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0003993 - acid phosphatase activity, GO:0006817 - phosphate transport, GO:0009505 - plant-type cell wall, GO:0046872 - metal ion binding	TO:0000102 - phosphorus sensitivity, TO:0002661 - seed maturation	
11383	PAP10B	OsPAP10b	PURPLE ACID PHOSPHATASE 10B	purple acid phosphatase 10b	PURPLE ACID PHOSPHATASE 10B		12	Digital expression data showed that the expression of OsPAP10b and OsPAP10d is very low, suggesting that these two genes may be pseudogenes. (Lu et al. 2016)	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0637000	LOC_Os12g44010.1				GO:0016036 - cellular response to phosphate starvation, GO:0009505 - plant-type cell wall, GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11384	PAP10C	OsPAP10c	PURPLE ACID PHOSPHATASE 10C	purple acid phosphatase 10c	PURPLE ACID PHOSPHATASE 10C	pap10c-1, pap10c-2, Ospap10c-1, Ospap10c-2	12	TO:0020102: phosphate content.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0637100	LOC_Os12g44020.1, LOC_Os12g44020.2				GO:0042594 - response to starvation, GO:0003993 - acid phosphatase activity, GO:0016036 - cellular response to phosphate starvation, GO:0009505 - plant-type cell wall, GO:0046872 - metal ion binding	TO:0000346 - tiller number, TO:0000153 - relative yield, TO:0000480 - nutrient sensitivity, TO:0001034 - relative plant height, TO:0000207 - plant height	PO:0006036 - root epidermis , PO:0009005 - root 
11385	PAP10D	OsPAP10d	PURPLE ACID PHOSPHATASE 10D	purple acid phosphatase 10d	PURPLE ACID PHOSPHATASE 10D		12	Digital expression data showed that the expression of OsPAP10b and OsPAP10d is very low, suggesting that these two genes may be pseudogenes. (Lu et al. 2016) LOC_Os12g44030, LOC_Os12g44040 and LOC_Os12g44050 are mis-annotated as three ORFs. LOC_Os12g44030 and LOC_Os12g44050 encode the N-terminal and C-terminal regions of the OsPAP10d protein, which is disrupted by the putative transposon gene LOC_Os12g44040. (Lu et al. 2016) 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0637200	LOC_Os12g44030.1				GO:0016787 - hydrolase activity, GO:0009505 - plant-type cell wall, GO:0016036 - cellular response to phosphate starvation		
11386	PAP15	OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1	PURPLE ACID PHOSPHATASE 15	purple acid phosphatase 15, purple acid phosphatase phytase b, phytase 1	PURPLE ACID PHOSPHATASE 15		3	HM006823, ADG07931. HQ337903.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0848200	LOC_Os03g63074.1, LOC_Os03g63074.2				GO:0009845 - seed germination, GO:0046872 - metal ion binding, GO:0003824 - catalytic activity, GO:0003993 - acid phosphatase activity, GO:0030170 - pyridoxal phosphate binding, GO:0008707 - 4-phytase activity, GO:0008152 - metabolic process, GO:0009846 - pollen germination		
11387	PAP18	OsPAP18	PURPLE ACID PHOSPHATASE 18	purple acid phosphatase 18	PURPLE ACID PHOSPHATASE 18		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0568900	LOC_Os03g37130.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11388	PAP20A	OsPAP20a	PURPLE ACID PHOSPHATASE 20A	purple acid phosphatase 20a	PURPLE ACID PHOSPHATASE 20A		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0151800	LOC_Os11g05410.1, LOC_Os11g05410.2				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11389	PAP20B	OsPAP20b	PURPLE ACID PHOSPHATASE 20B	purple acid phosphatase 20b	PURPLE ACID PHOSPHATASE 20B		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0151000	LOC_Os12g05540.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11390	PAP21A	OsPAP21a	PURPLE ACID PHOSPHATASE 21A	purple acid phosphatase 21a	PURPLE ACID PHOSPHATASE 21A		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0410600	LOC_Os04g33530.1				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding		
11391	PAP21B	OsPAP21b	PURPLE ACID PHOSPHATASE 21B	purple acid phosphatase 21b	PURPLE ACID PHOSPHATASE 21B		11	TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0151700	LOC_Os11g05400.1				GO:0016036 - cellular response to phosphate starvation, GO:0003993 - acid phosphatase activity, GO:0006796 - phosphate metabolic process, GO:0046872 - metal ion binding	TO:0000457 - total biomass yield, TO:0000227 - root length, TO:0001019 - root to total biomass ratio	
11392	PAP21C	OsPAP21c	PURPLE ACID PHOSPHATASE 21C	purple acid phosphatase 21c	PURPLE ACID PHOSPHATASE 21C		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0150700	LOC_Os12g05510.1				GO:0046872 - metal ion binding, GO:0003993 - acid phosphatase activity		
11393	PAP23	OsPAP23	PURPLE ACID PHOSPHATASE 23	purple acid phosphatase 23	PURPLE ACID PHOSPHATASE 23		8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0280100	LOC_Os08g17784.1, LOC_Os08g17784.2				GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding, GO:0016036 - cellular response to phosphate starvation		
11394	PAP26	OsPAP26	PURPLE ACID PHOSPHATASE 26	purple acid phosphatase 26	PURPLE ACID PHOSPHATASE 26		6	TO:0020102: phosphate content.	 Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0643900	LOC_Os06g43640.2, LOC_Os06g43640.1				GO:0006817 - phosphate transport, GO:0003993 - acid phosphatase activity, GO:0005773 - vacuole, GO:0009505 - plant-type cell wall, GO:0046872 - metal ion binding, GO:0042594 - response to starvation, GO:0010150 - leaf senescence, GO:0055062 - phosphate ion homeostasis	TO:0000249 - leaf senescence, TO:0002661 - seed maturation	PO:0001054 - 4 leaf senescence stage 
11395	PAP27A	OsPAP27a, NPP6, OsNPP6	PURPLE ACID PHOSPHATASE 27A	purple acid phosphatase 27a, Nucleotide pyrophosphatase/phosphodiesterase 6	PURPLE ACID PHOSPHATASE 27A		9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0506000	LOC_Os09g32840.1				GO:0005618 - cell wall, GO:0003993 - acid phosphatase activity, GO:0046872 - metal ion binding, GO:0016036 - cellular response to phosphate starvation		
11396	PAP27C	OsPAP27c	PURPLE ACID PHOSPHATASE 27C	purple acid phosphatase 27c	PURPLE ACID PHOSPHATASE 27C		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0505900	LOC_Os09g32830.1						
11397	PHGPX	OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX	PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE	glutathione peroxidase 2, phospholipid hydroperoxide glutathione peroxidase			3	AJ270955.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0358100	LOC_Os03g24380.1				GO:0004602 - glutathione peroxidase activity, GO:0050832 - defense response to fungus, GO:0009793 - embryonic development ending in seed dormancy, GO:0005886 - plasma membrane, GO:0006979 - response to oxidative stress	TO:0000074 - blast disease	
11398	GPX3	OsGpx3, GPX3, OsGPx03	GLUTATHIONE PEROXIDASE 3	glutathione peroxidase 3	GLUTATHIONE PEROXIDASE 3		2		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0664000	LOC_Os02g44500.1				GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0004602 - glutathione peroxidase activity, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0046686 - response to cadmium ion	TO:0000074 - blast disease	
11399	GPX4	OsGpx4, GPX4, OsGPx04, OsGPX4	GLUTATHIONE PEROXIDASE 4	glutathione peroxidase 4	GLUTATHIONE PEROXIDASE 4		6	GO:0080167:response to karrikin.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0185900	LOC_Os06g08670.1				GO:0009941 - chloroplast envelope, GO:0031099 - regeneration, GO:0045454 - cell redox homeostasis, GO:0009570 - chloroplast stroma, GO:0006979 - response to oxidative stress, GO:0009535 - chloroplast thylakoid membrane, GO:0004602 - glutathione peroxidase activity		
11400	GPX5	OsGpx5, GPX5, OsGPx05	GLUTATHIONE PEROXIDASE 5	glutathione peroxidase 5	GLUTATHIONE PEROXIDASE 5		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0284900	LOC_Os11g18170.1				GO:0004602 - glutathione peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046685 - response to arsenic	TO:0002657 - oxidative stress	PO:0009006 - shoot system 
11401	SAMS1	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS	S-ADENOSYL-L-METHIONINE SYNTHETASE 1	S-Adenosyl-l-methionine synthetase 1, S-adenosyl methionine synthetase, S-adenosylmethionine synthetase 1, SAM synthase	S-ADENOSYL-L-METHIONINE SYNTHETASE 1	Ossams1	5	Z26867. A2Y053. Q0DKY4. D24100, AU174654, AU065347. AM177232-AM177311 (exon 1: O. sativa, O. rufipogon, O. officinalis) TO:0020090: zinc content trait.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0135700	LOC_Os05g04510.2, LOC_Os05g04510.1				GO:0009873 - ethylene mediated signaling pathway, GO:0006555 - methionine metabolic process, GO:0004478 - methionine adenosyltransferase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0006730 - one-carbon metabolic process, GO:0010364 - regulation of ethylene biosynthetic process, GO:0006556 - S-adenosylmethionine biosynthetic process, GO:0051607 - defense response to virus, GO:0009809 - lignin biosynthetic process, GO:0005618 - cell wall, GO:0009753 - response to jasmonic acid stimulus, GO:0015948 - methanogenesis, GO:0046872 - metal ion binding, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005730 - nucleolus	TO:0002759 - grain number, TO:0000249 - leaf senescence, TO:0000148 - viral disease resistance, TO:0000391 - seed size, TO:0000590 - grain weight, TO:0002661 - seed maturation, TO:0000172 - jasmonic acid sensitivity, TO:0000476 - growth hormone content	
11402	_	OsSAMS3, OsSAMS1, SAMS3, SAMS1, SAM2, SAM1	_	S-Adenosyl-l-methionine synthetase 3			1	Q9LGU6. CI069897. OsSAMS1 in Ishimaru et al. 2010. SAM2 in Yoon et al. 2020. SAM1 in Shim et al. 2021. SAMS3 in Lin et al. 2021.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0293000	LOC_Os01g18860.1, LOC_Os01g18860.2				GO:0006556 - S-adenosylmethionine biosynthetic process, GO:0009809 - lignin biosynthetic process, GO:0005524 - ATP binding, GO:0006555 - methionine metabolic process, GO:0009409 - response to cold, GO:0005730 - nucleolus, GO:0006730 - one-carbon metabolic process, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0046872 - metal ion binding, GO:0015948 - methanogenesis, GO:0005618 - cell wall, GO:0046688 - response to copper ion, GO:0004478 - methionine adenosyltransferase activity	TO:0000021 - copper sensitivity	
11403	PAO1	OsPAO1, OsAO4, AO4	POLYAMINE OXIDASE 1	Polyamine oxidase 1, Amine oxidase 4	POLYAMINE OXIDASE 1		1	FAD-containing polyamide oxidase. GO: 1990534: thermospermine oxidase activity. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0710200	LOC_Os01g51320.1				GO:0009739 - response to gibberellin stimulus, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0006598 - polyamine catabolic process, GO:0016491 - oxidoreductase activity, GO:0005737 - cytoplasm, GO:0009735 - response to cytokinin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity	
11404	PAO3	OsPAO3, OsAO3, AO3	POLYAMINE OXIDASE 3	Polyamine oxidase 3, Amine oxidase 3	POLYAMINE OXIDASE 3		4	LOC_Os04g53190/LOC_Os04g53195. LOC_Os04g53190 in Saha and Giri 2017. FAD-containing polyamide oxidase. GO:1904583: response to polyamine macromolecule. GO:1904585: response to putrescine.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0623300	LOC_Os04g53195.1, LOC_Os04g53190.2, LOC_Os04g53190.1				GO:0016491 - oxidoreductase activity, GO:0009408 - response to heat, GO:0005777 - peroxisome, GO:0000166 - nucleotide binding, GO:0006598 - polyamine catabolic process, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
11405	PAO4	OsPAO4, OsAO1, AO1	POLYAMINE OXIDASE 4	Polyamine oxidase 4, Amine oxidase 1	POLYAMINE OXIDASE 4	ko-ospao4	4	FAD-containing polyamide oxidase. target gene of Osa-miR11117. GO:1904583: response to polyamine macromolecule. GO:1904585: response to putrescine. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0671200	LOC_Os04g57550.1				GO:0009751 - response to salicylic acid stimulus, GO:0050832 - defense response to fungus, GO:0006598 - polyamine catabolic process, GO:0046592 - polyamine oxidase activity, GO:0016491 - oxidoreductase activity, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0000166 - nucleotide binding, GO:0005777 - peroxisome, GO:0009873 - ethylene mediated signaling pathway	TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000357 - growth and development trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0005052 - plant callus 
11406	PAO5	OsPAO5, OsAO2, AO2	POLYAMINE OXIDASE 5	Polyamine oxidase 5, Amine oxidase 2	POLYAMINE OXIDASE 5		4	FAD-containing polyamide oxidase.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os04g0671300	LOC_Os04g57560.1				GO:0050665 - hydrogen peroxide biosynthetic process, GO:0046592 - polyamine oxidase activity, GO:0006598 - polyamine catabolic process, GO:0009739 - response to gibberellin stimulus, GO:0005777 - peroxisome, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0009415 - response to water, GO:0000166 - nucleotide binding, GO:0009845 - seed germination	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0010001 - percent germination, TO:0000605 - hydrogen peroxide content	PO:0009009 - plant embryo , PO:0007057 - 0 seed germination stage 
11407	PAO7	OsPAO7, OsPAO3, PAO3	POLYAMINE OXIDASE 7	Polyamine oxidase 7	POLYAMINE OXIDASE 7		9	FAD-containing polyamide oxidase. GO:1904585: response to putrescine. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0368500	LOC_Os09g20284.1				GO:0009651 - response to salt stress, GO:0046592 - polyamine oxidase activity, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0006598 - polyamine catabolic process, GO:0009751 - response to salicylic acid stimulus, GO:0050660 - FAD binding, GO:0005576 - extracellular region, GO:0016491 - oxidoreductase activity	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance	
11408	GF14C	GF14c, OsGF14c, 14-3-3c	G-BOX FACTOR 14-3-3C PROTEIN	G-box factor 14-3-3c protein		gf14c	8	Q6ZKC0. AAB07457. D22692. osa-miR414 target gene.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os08g0430500	LOC_Os08g33370.1, LOC_Os08g33370.2				GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:2000028 - regulation of photoperiodism, flowering, GO:0005739 - mitochondrion, GO:0005635 - nuclear envelope, GO:0005618 - cell wall, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0002616 - flowering time, TO:0000137 - days to heading	
11409	GF14B	GF14b, OsGF14b, 14-3-3b	G-BOX FACTOR 14-3-3B PROTEIN	G-box factor 14-3-3b protein	G-BOX FACTOR 14-3-3B PROTEIN	osgf14b	4	Q7XTE8. AAB07456. D15663.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date	Os04g0462500	LOC_Os04g38870.5, LOC_Os04g38870.4, LOC_Os04g38870.3, LOC_Os04g38870.2, LOC_Os04g38870.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0009737 - response to abscisic acid stimulus, GO:0005635 - nuclear envelope, GO:0006970 - response to osmotic stress, GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus, GO:0009570 - chloroplast stroma, GO:0005739 - mitochondrion, GO:0005634 - nucleus, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	
11410	GF14A	GF14a, OsGF14a, WIN2, 14-3-3a	G-BOX FACTOR 14-3-3A PROTEIN	G-box factor 14-3-3a protein, wound-inducible WIN2	G-BOX FACTOR 14-3-3A PROTEIN		8	Q84J55. AAO72553. AY224524.	 Reproductive organ - Heading date	Os08g0480800	LOC_Os08g37490.1				GO:0046686 - response to cadmium ion, GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0009505 - plant-type cell wall		
11411	GF14D	GF14d, OsGF14d, Os14-3-3, 14-3-3d	G-BOX FACTOR 14-3-3D PROTEIN	G-box factor 14-3-3d protein			11	Q2R2W2. AAB07458.	 Reproductive organ - Heading date	Os11g0546900	LOC_Os11g34450.1				GO:0005739 - mitochondrion, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0005635 - nuclear envelope, GO:0046686 - response to cadmium ion		
11412	GF14F	GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f	G-BOX FACTOR 14-3-3F PROTEIN	G-box factor 14-3-3f protein, ras-related small GTP-binding protein ric1		OsGF14f-Crispr-5	3	Q06967. D16140. D10436. D23181.	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0710800	LOC_Os03g50290.1, LOC_Os03g50290.2, LOC_Os03g50290.3				GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0006588 - activation of tryptophan 5-monooxygenase activity, GO:0006970 - response to osmotic stress, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0005635 - nuclear envelope, GO:0000077 - DNA damage checkpoint, GO:0046686 - response to cadmium ion, GO:0009570 - chloroplast stroma, GO:0008426 - protein kinase C inhibitor activity, GO:0009409 - response to cold, GO:0004623 - phospholipase A2 activity	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
11413	GF14G	GF14g, OsGF14g, 14-3-3g	G-BOX FACTOR 14-3-3G PROTEIN	G-box factor 14-3-3g protein			1	Q5QNB8. BAD73105.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os01g0209200	LOC_Os01g11110.2				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
11414	GF14H	GF14h, OsGF14h, 14-3-3h	G-BOX FACTOR 14-3-3H PROTEIN	G-box factor 14-3-3h protein			11	Q2R1D5. ABA94733.	 Reproductive organ - Heading date,  Character as QTL - Germination	Os11g0609600	LOC_Os11g39540.1				GO:0009737 - response to abscisic acid stimulus, GO:0010030 - positive regulation of seed germination, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0005783 - endoplasmic reticulum, GO:0005737 - cytoplasm, GO:0008104 - protein localization, GO:0007165 - signal transduction	TO:0000430 - germination rate, TO:0000615 - abscisic acid sensitivity	
11415	KAN1	OsKAN1, OsKAN2, KAN2	KANADI 1	OsKANADI1, KANADI1, OsKANADI2, KANADI2			2	a rice homologue of Arabidopsis KANADI. OsKANADI2 in Liu et al. 2018, Kannan et al. 2021.	 Reproductive organ - Heading date,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0696900	LOC_Os02g46940.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
11416	_	OsBIP116b	_				7	a rice homologue of Arabidopsis WAVEDAMPENED2.	 Reproductive organ - Heading date	Os07g0185432	LOC_Os07g08790.1						
11417	PK1	OsPK1	PYRUVATE KINASE 1	pyruvate kinase 1	PYRUVATE KINASE 1	ospk1	11	A novel rice dwarf mutant ospk1, showing dwarfism, panicle enclosure, reduced seed set, and outgrowth of axillary buds from culm nodes, was identified. D16086. cytosolic pyruvate kinase (PKc) subunit. PO:0030104: caryopsis fruit.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Seed,  Biochemical character	Os11g0148500	LOC_Os11g05110.1, LOC_Os11g05110.2, LOC_Os11g05110.3				GO:0005829 - cytosol, GO:0004743 - pyruvate kinase activity, GO:0000287 - magnesium ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0010431 - seed maturation, GO:0005739 - mitochondrion, GO:0046686 - response to cadmium ion, GO:0030955 - potassium ion binding, GO:0006096 - glycolysis, GO:0005886 - plasma membrane, GO:0009635 - response to herbicide, GO:0005737 - cytoplasm	TO:0000058 - herbicide sensitivity, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0000590 - grain weight, TO:0000266 - chalky endosperm	PO:0009010 - seed , PO:0001170 - seed development stage , PO:0007632 - seed maturation stage , PO:0025034 - leaf 
11418	_	PEPCK, OsPEPCK	_	PEP carboxykinase, Phosphoenolpyruvate carboxykinase			10	LOC_Os10g13700.	 Biochemical character	Os10g0204400	LOC_Os10g13700.2				GO:0016020 - membrane, GO:0005829 - cytosol, GO:0046686 - response to cadmium ion, GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity, GO:0006094 - gluconeogenesis, GO:0016036 - cellular response to phosphate starvation, GO:0016301 - kinase activity, GO:0009817 - defense response to fungus, incompatible interaction, GO:0005524 - ATP binding, GO:0005730 - nucleolus		
11419	PEPC1	PEPC-1, Osppc1, ppc1	PHOSPHOENOLPYRUVATE CARBOXYLASE 1	PEP carboxylase 1, Phosphoenolpyruvate carboxylase 1, PEPCase 1	PHOSPHOENOLPYRUVATE CARBOXYLASE 1		2	TO:0020093: nitrogen content. the root-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase. AF271995.	 Seed,  Seed - Physiological traits - Storage substances,  Biochemical character	Os02g0244700	LOC_Os02g14770.1, LOC_Os02g14770.2, LOC_Os02g14770.3, LOC_Os02g14770.4				GO:0008652 - cellular amino acid biosynthetic process, GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0006099 - tricarboxylic acid cycle, GO:0006807 - nitrogen compound metabolic process, GO:0048316 - seed development, GO:0015977 - carbon utilization by fixation of carbon dioxide	TO:0000653 - seed development trait, TO:0002653 - endosperm storage protein content	PO:0004506 - developing seed stage 
11420	PPC4	PEPC-2, Osppc4, ppc4	PHOSPHOENOLPYRUVATE CARBOXYLASE 4	PEP carboxylase 2, Phosphoenolpyruvate carboxylase 2, phosphoenolpyruvate carboxylase 4, PEPCase 4	PHOSPHOENOLPYRUVATE CARBOXYLASE 4		1	PEPC-2 in Zhang et al. 2012. a chloroplastic isozyme. a plant-type Phosphoenolpyruvate Carboxylase. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0208700	LOC_Os01g11054.4, LOC_Os01g11054.1, LOC_Os01g11054.2, LOC_Os01g11054.3				GO:0042594 - response to starvation, GO:0009507 - chloroplast, GO:0006099 - tricarboxylic acid cycle, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0008964 - phosphoenolpyruvate carboxylase activity	TO:0000011 - nitrogen sensitivity	
11422	_	ALT-2, OsGGAT, GGAT	_	Alanine transaminase 2, glutamate:glyoxylate aminotransferase			7		 Biochemical character	Os07g0108300	LOC_Os07g01760.1				GO:0016020 - membrane, GO:0048046 - apoplast, GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity, GO:0005773 - vacuole, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration, GO:0047958 - glycine:2-oxoglutarate aminotransferase activity, GO:0005777 - peroxisome, GO:0008453 - alanine-glyoxylate transaminase activity, GO:0030170 - pyridoxal phosphate binding		
11423	PURAPLHA	OsPuraplha	PURINE-RICH DNA-BINDING PROTEIN ALPHA	purine-rich DNA-binding protein alpha, purine-rich element binding protein alpha	PURINE-RICH DNA-BINDING PROTEIN ALPHA		1	GI:218187924. OsI_01264. GO:0000977: RNA polymerase II transcription regulatory region sequence-specific DNA binding. GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.	 Tolerance and resistance - Stress tolerance	Os01g0260700	LOC_Os01g15600.1				GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0032422 - purine-rich negative regulatory element binding, GO:0003729 - mRNA binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005737 - cytoplasm		
11424	MTP1	OsMTP1	METAL TOLERANCE PROTEIN 1	metal tolerance protein 1	METAL TOLERANCE PROTEIN 1		5	Q688R1. KU356852.1 (Indica). Cation Diffusion Facilitator (CDF) family. GO:1990532: stress response to nickel ion. GO:1990170: stress response to cadmium ion. TO:0020090: zinc content trait. TO:0006059: cadmium content trait. TO:0020096: mineral and ion transport trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0128400	LOC_Os05g03780.1				GO:0009705 - plant-type vacuole membrane, GO:0010233 - phloem transport, GO:0006829 - zinc ion transport, GO:0005886 - plasma membrane, GO:0010299 - detoxification of cobalt ion, GO:0015691 - cadmium ion transport, GO:0046873 - metal ion transmembrane transporter activity, GO:0048316 - seed development, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0070574 - cadmium ion transmembrane transport, GO:0010288 - response to lead ion, GO:0010312 - detoxification of zinc ion, GO:0009617 - response to bacterium		PO:0009047 - stem , PO:0009005 - root , PO:0025416 - sieve tube , PO:0001170 - seed development stage , PO:0025034 - leaf 
11425	CDC16	OsCDC16	CELL DIVISION CONTROL 16	cell division cycle protein 16					 Biochemical character								
11427	CAL1	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1, OsPDF2.2, PDF2.2	CADMIUM ACCUMULATION IN LEAF 1 	Cp-thionin 1, defensing-like 7, Pathogenesis related gene 12, cadmium accumulation in leaf 1, Cd accumulation in leaf 1		cal1	2	Q6K209. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os02g0629800	LOC_Os02g41904.1				GO:0009617 - response to bacterium, GO:0009505 - plant-type cell wall, GO:0009753 - response to jasmonic acid stimulus, GO:0005886 - plasma membrane, GO:0009845 - seed germination, GO:0007584 - response to nutrient, GO:0050832 - defense response to fungus, GO:0010233 - phloem transport, GO:0046870 - cadmium ion binding, GO:0051047 - positive regulation of secretion, GO:0055073 - cadmium ion homeostasis, GO:0005615 - extracellular space	TO:0000172 - jasmonic acid sensitivity, TO:0000480 - nutrient sensitivity	PO:0005772 - exodermis , PO:0020104 - leaf sheath , PO:0007616 - flowering stage , PO:0009005 - root , PO:0007057 - 0 seed germination stage , PO:0000074 - parenchyma cell , PO:0005352 - xylem 
11428	SUI1	OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1	SHORTENED UPPERMOST INTERNODE 1	Shortened Uppermost Internode 1, Phosphatidylserine Synthase 1	PHOSPHATIDYLSERINE SYNTHASE 1	sui1-1, sui1-2, sui1, sui1-4	1	GU564663. Q0JR55. TO:0000755: shoot internode anatomy and morphology trait.	 Biochemical character,  Vegetative organ - Culm	Os01g0118300	LOC_Os01g02890.1				GO:0017157 - regulation of exocytosis, GO:0006646 - phosphatidylethanolamine biosynthetic process, GO:0006644 - phospholipid metabolic process, GO:0005789 - endoplasmic reticulum membrane, GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity, GO:0016021 - integral to membrane, GO:0019827 - stem cell maintenance, GO:0048831 - regulation of shoot development, GO:0080006 - internode patterning, GO:0006659 - phosphatidylserine biosynthetic process, GO:0006892 - post-Golgi vesicle-mediated transport, GO:0001558 - regulation of cell growth	TO:0000397 - grain size, TO:0002641 - acid detergent fiber, TO:0000207 - plant height, TO:0000420 - fertility related trait, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0000300 - glucose content, TO:0000346 - tiller number	PO:0005005 - shoot internode , PO:0007089 - stem elongation stage 
11429	PR4B	OsPR4b, OsPR-4b	PATHOGENESIS-RELATED GENE 4B	pathogenesis-related protein 4b, PR protein 4b	PATHOGENESIS-RELATED PROTEIN 4B		11	PR4/barwin homolog.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0592100	LOC_Os11g37960.1				GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0080027 - response to herbivore, GO:0009615 - response to virus, GO:0009723 - response to ethylene stimulus, GO:0009627 - systemic acquired resistance, GO:0009817 - defense response to fungus, incompatible interaction		
11430	PR4C	OsPR4c	PATHOGENESIS-RELATED GENE 4C	pathogenesis-related protein 4c, PR protein 4c	PATHOGENESIS-RELATED PROTEIN 4C		11		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0592000	LOC_Os11g37950.1				GO:0009615 - response to virus, GO:0050832 - defense response to fungus, GO:0009627 - systemic acquired resistance, GO:0009817 - defense response to fungus, incompatible interaction, GO:0042742 - defense response to bacterium, GO:0080027 - response to herbivore, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus	TO:0000255 - sheath blight disease resistance	
11431	PR4D	OsPR4d	PATHOGENESIS-RELATED GENE 4D	pathogenesis-related protein 4d, PR protein 4d	PATHOGENESIS-RELATED PROTEIN 4D		11		 Tolerance and resistance - Stress tolerance	Os11g0591800	LOC_Os11g37940.1				GO:0009723 - response to ethylene stimulus, GO:0009817 - defense response to fungus, incompatible interaction, GO:0042742 - defense response to bacterium, GO:0009627 - systemic acquired resistance, GO:0009615 - response to virus, GO:0080027 - response to herbivore, GO:0009651 - response to salt stress		
11432	PR4E	OsPR4e	PATHOGENESIS-RELATED GENE 4E	pathogenesis-related protein 4e, PR protein 4e	PATHOGENESIS-RELATED PROTEIN 4E		11	LOC Os11g37930.							GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus		
11433	GAP1	OsGAP1	GTPASE-ACTIVATING PROTEIN 1	GTPase-activating protein 1	GTPASE-ACTIVATING PROTEIN 1		2	AU101977.	 Tolerance and resistance - Stress tolerance	Os02g0709800 	LOC_Os02g48000.1, LOC_Os02g48000.2, LOC_Os02g48000.3				GO:0006970 - response to osmotic stress, GO:0005622 - intracellular, GO:0032851 - positive regulation of Rab GTPase activity, GO:0005097 - Rab GTPase activator activity, GO:0009651 - response to salt stress	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
11434	GDI3	OsGDI3, OsGDI2, GDI2	GDP DISSOCIATION INHIBITOR 3	GDP dissociation inhibitor 3, GDP dissociation inhibitor3, GDP dissociation inhibitor protein OsGDI3	GDP DISSOCIATION INHIBITOR 3		3	AU094095. RabGDI family. NADB domain containing protein. OsGDI2 in Shad et al. 2023. PO:0030123: panicle inflorescence.		Os03g0277000 	LOC_Os03g16900.1				GO:0015031 - protein transport, GO:0005093 - Rab GDP-dissociation inhibitor activity		PO:0009049 - inflorescence , PO:0006000 - caryopsis hull , PO:0009029 - stamen 
11435	GDI1	OsGDI1	GDP DISSOCIATION INHIBITOR 1	GDP dissociation inhibitor 1, GDP dissociation inhibitor1, GDP dissociation inhibitor protein OsGDI1, GDP-dissociation inhibitor 1, guanine nucleotide-dissociation inhibitor 1	GDP DISSOCIATION INHIBITOR 1		5	AF016896. RabGDI family. NADB domain containing protein.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape	Os05g0418000	LOC_Os05g34540.1				GO:0015031 - protein transport, GO:0005093 - Rab GDP-dissociation inhibitor activity, GO:0050832 - defense response to fungus, GO:0048227 - plasma membrane to endosome transport	TO:0000397 - grain size, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000734 - grain length, TO:0000399 - grain thickness	
11436	GDI2	OsGDI2, OsGDI3, GDI3	GDP DISSOCIATION INHIBITOR 2	GDP dissociation inhibitor 2, GDP dissociation inhibitor2, GDP dissociation inhibitor protein OsGDI2, GDP-dissociation inhibitor 2, guanine nucleotide-dissociation inhibitor 3	GDP DISSOCIATION INHIBITOR 2		5	AF016897. RabGDI family. NADB domain containing protein. OsGDI3 in Shad et al. 2023.		Os05g0304400	LOC_Os05g23860.1				GO:0048227 - plasma membrane to endosome transport, GO:0005093 - Rab GDP-dissociation inhibitor activity, GO:0015031 - protein transport		
11437	DSM3	OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1	DROUGHT- AND SALT-SENSITIVE MUTANT 3	inositol 1, 3, 4-trisphosphate 5/6-kinase 2, drought- and salt-sensitive mutant 3	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 2	dsm3, dsm3-1, dsm3-2	3	AY323825. GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0230500	LOC_Os03g12840.1, LOC_Os03g12840.2, LOC_Os03g12840.3				GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0032957 - inositol trisphosphate metabolic process, GO:0047484 - regulation of response to osmotic stress, GO:0005783 - endoplasmic reticulum, GO:0005524 - ATP binding, GO:0000287 - magnesium ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000143 - relative biomass, TO:0000340 - total soluble sugar content, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000153 - relative yield	
11438	ITPK1	OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 1	inositol 1, 3, 4-trisphosphate 5/6-kinase 1	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 1		10	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. AAK00417.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0103800	LOC_Os10g01480.1				GO:0005634 - nucleus, GO:0000287 - magnesium ion binding, GO:0005737 - cytoplasm, GO:0009611 - response to wounding, GO:0009737 - response to abscisic acid stimulus, GO:0032957 - inositol trisphosphate metabolic process, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0032958 - inositol phosphate biosynthetic process, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11439	ITPK3	OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 3	inositol 1, 3, 4-trisphosphate 5/6-kinase 3, inositol polyphosphate kinase 1	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 3		3	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. OsIPK1 in Zhao et al. 2013. LOC_Os03g51610.	 Biochemical character	Os03g0726200	LOC_Os03g51610.1				GO:0009611 - response to wounding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0032957 - inositol trisphosphate metabolic process, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0032958 - inositol phosphate biosynthetic process, GO:0005524 - ATP binding, GO:0000287 - magnesium ion binding	TO:0000615 - abscisic acid sensitivity	
11440	ITPK4	OsITPK4, OsITP5/6K-4, ITP5/6K-4	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 4	inositol 1, 3, 4-trisphosphate 5/6-kinase 4	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 4		2	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0466400	LOC_Os02g26720.1				GO:0032958 - inositol phosphate biosynthetic process, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus, GO:0000287 - magnesium ion binding, GO:0005622 - intracellular, GO:0032957 - inositol trisphosphate metabolic process	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11441	ITPK5	OsITPK5, OsITP5/6K-5, OsITL3	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 5	inositol 1, 3, 4-trisphosphate 5/6-kinase 5	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 5		10	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. AAL67584.	 Biochemical character	Os10g0576100	LOC_Os10g42550.1				GO:0005524 - ATP binding, GO:0047325 - inositol tetrakisphosphate 1-kinase activity, GO:0032957 - inositol trisphosphate metabolic process, GO:0000287 - magnesium ion binding, GO:0005622 - intracellular		
11442	ITPK6	OsITPK6, OsITP5/6K-6, ITP5/6K-6	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 6	inositol 1, 3, 4-trisphosphate 5/6-kinase 6	INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 6		9	GO:0052726:inositol-1,3,4-trisphosphate 5-kinase activity. GO:0052725:inositol-1,3,4-trisphosphate 6-kinase activity. LOC_Os09g34300.	 Biochemical character	Os09g0518700	LOC_Os09g34300.1				GO:0009737 - response to abscisic acid stimulus, GO:0000287 - magnesium ion binding, GO:0032958 - inositol phosphate biosynthetic process, GO:0005524 - ATP binding, GO:0005622 - intracellular, GO:0032957 - inositol trisphosphate metabolic process, GO:0047325 - inositol tetrakisphosphate 1-kinase activity	TO:0000615 - abscisic acid sensitivity	
11443	ROPGEF1	Os RopGEF1, OsRopGEF1, RopGEF1, OsRacGEF7, RacGEF7, OsGEF22, GEF22	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 1	GEF for ROP 1, guanine nucleotide exchange factor for Rop 1, Rop-specific GEF1, Rop-specific guanine nucleotide exchange factor 1, Guanine nucleotide exchange factor 22	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 1		10	RhoGEF family. PRONE domain containing protein. OsRacGEF7 in Jing et al. 2021.	 Tolerance and resistance - Stress tolerance	Os10g0550300	LOC_Os10g40270.1				GO:0005886 - plasma membrane, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0009414 - response to water deprivation, GO:0016301 - kinase activity	TO:0000276 - drought tolerance	
11444	ROPGEF2	Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159, OsGEF29, GEF29	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 2	GEF for ROP 2, guanine nucleotide exchange factor for Rop 2, Rop-specific GEF2, Rop-specific guanine nucleotide exchange factor 2, Guanine nucleotide exchange factor 29	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 2		5	RhoGEF family. PRONE domain containing protein. GO:0080147:root hair cell development. a mature anther-preferentially expressed gene. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0560100 	LOC_Os05g48640.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0009793 - embryonic development ending in seed dormancy, GO:0009860 - pollen tube growth, GO:0005737 - cytoplasm		PO:0006000 - caryopsis hull , PO:0009049 - inflorescence , PO:0009029 - stamen , PO:0009066 - anther 
11445	ROPGEF3	Os RopGEF3, OsRopGEF3, RopGEF3, OsGEF26, GEF26	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 3	GEF for ROP 3, guanine nucleotide exchange factor for Rop 3, Rop-specific GEF3, Rop-specific guanine nucleotide exchange factor 3, Guanine nucleotide exchange factor 26	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 3	osropgef3, osropgef3-1, osropgef3-2	2	RhoGEF family. PRONE domain containing protein. GO:1903409: reactive oxygen species biosynthetic process. GO:1902890: regulation of root hair elongation. PO:0030123: panicle inflorescence.	 Vegetative organ - Root	Os02g0272300	LOC_Os02g17240.1				GO:0048767 - root hair elongation, GO:0005737 - cytoplasm, GO:0043226 - organelle, GO:0005089 - Rho guanyl-nucleotide exchange factor activity	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage , PO:0009049 - inflorescence , PO:0006000 - caryopsis hull , PO:0009029 - stamen , PO:0000256 - root hair cell 
11446	ROPGEF4	Os RopGEF4, OsRopGEF4, RopGEF4	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 4	GEF for ROP 4, guanine nucleotide exchange factor for Rop 4, Rop-specific GEF4, Rop-specific guanine nucleotide exchange factor 4	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 4		2			Os02g0702600	LOC_Os02g47420.1, LOC_Os02g47420.2, LOC_Os02g47420.3, LOC_Os02g47420.4				GO:0005089 - Rho guanyl-nucleotide exchange factor activity		
11447	ALDH18B2	P5CS2, OsP5CS2, OsALDH18B2	ALDEHYDE DEHYDROGENASE 18B2	pyrroline-5-carboxylate synthetase 2, proline carboxylate synthase 2, Aldehyde dehydrogenase 18B2	ALDEHYDE DEHYDROGENASE 18B2		1	OsP5CS1 in Zhu et al. 2015. OsP5CS in Chen et al. 2017.	 Seed - Physiological traits - Taste,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0848200	LOC_Os01g62900.1				GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity, GO:0009651 - response to salt stress, GO:0009610 - response to symbiotic fungus, GO:0009269 - response to desiccation, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0004349 - glutamate 5-kinase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009793 - embryonic development ending in seed dormancy, GO:0048364 - root development, GO:0042538 - hyperosmotic salinity response, GO:0006561 - proline biosynthetic process	TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000087 - aroma, TO:0006001 - salt tolerance, TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance	PO:0025281 - pollen 
11448	ROPGEF6	Os RopGEF6, OsRopGEF6, RopGEF6, OsGEF28, GEF28	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 6	GEF for ROP 6, guanine nucleotide exchange factor for Rop 6, Rop-specific GEF6, Rop-specific guanine nucleotide exchange factor 6, Guanine nucleotide exchange factor 28	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 6		1	RhoGEF family. PRONE domain containing protein. PO:0030123: panicle inflorescence.		Os01g0675000	LOC_Os01g48410.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity		PO:0009029 - stamen , PO:0006000 - caryopsis hull , PO:0009049 - inflorescence 
11449	ROPGEF7	Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2, RacGEF2, OsRacGEF1, RacGEF1, OsGEF20, GEF20	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 7	GEF for ROP 7, guanine nucleotide exchange factor for Rop 7, Rop-specific GEF7, Rop-specific guanine nucleotide exchange factor 7, small GTPase Rac/ROP guanine nucleotide exchange factor 2, Guanine nucleotide exchange factor 20	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 7		9	RhoGEF family. PRONE domain containing protein. OsRacGEF2 in Akamatsu et al. 2015. GO:0071555: cell wall organization. OsRacGEF1 in Jing et al. 2021. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os09g0544800	LOC_Os09g37270.1, LOC_Os09g37270.2				GO:0008356 - asymmetric cell division, GO:0008361 - regulation of cell size, GO:0009825 - multidimensional cell growth, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009926 - auxin polar transport, GO:0080092 - regulation of pollen tube growth, GO:0009860 - pollen tube growth, GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0005783 - endoplasmic reticulum, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0048767 - root hair elongation, GO:0016324 - apical plasma membrane, GO:0010075 - regulation of meristem growth, GO:0006952 - defense response, GO:0007389 - pattern specification process, GO:0000271 - polysaccharide biosynthetic process	TO:0000276 - drought tolerance, TO:0000112 - disease resistance	
11450	ROPGEF8	Os RopGEF8, OsRopGEF8, RopGEF8, OsGEF27, GEF27	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 8	GEF for ROP 8, guanine nucleotide exchange factor for Rop 8, Rop-specific GEF8, Rop-specific guanine nucleotide exchange factor 8, Guanine nucleotide exchange factor 27	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 8		1	RhoGEF family. PRONE domain containing protein. PO:0030123: panicle inflorescence.		Os01g0760300 	LOC_Os01g55520.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity		PO:0006000 - caryopsis hull , PO:0009049 - inflorescence , PO:0009029 - stamen 
11451	ROPGEF9	Os RopGEF9, OsRopGEF9, RopGEF9, OsGEF24, GEF24	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 9	GEF for ROP 9, guanine nucleotide exchange factor for Rop 9, Rop-specific GEF9, Rop-specific guanine nucleotide exchange factor 9, Guanine nucleotide exchange factor 24	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 9		4	RhoGEF family. PRONE domain containing protein.		Os04g0559100	LOC_Os04g47170.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0005886 - plasma membrane		
11452	ROPGEF11/12	Os RopGEF11, OsRopGEF11, RopGEF11, Os RopGEF12, OsRopGEF12, RopGEF12, OsRopGEF11/12, OsGEF25, GEF25	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 11/12	GEF for ROP 11, guanine nucleotide exchange factor for Rop 11, Rop-specific GEF11, Rop-specific guanine nucleotide exchange factor 11, GEF for ROP 12, guanine nucleotide exchange factor for Rop 12, Rop-specific GEF12, Rop-specific guanine nucleotide exchange factor 12, Guanine nucleotide exchange factor 25	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 11/12		7	RhoGEF family. PRONE domain containing protein.		Os07g0481100	LOC_Os07g29780.1, LOC_Os07g29780.2				GO:0005886 - plasma membrane, GO:0005089 - Rho guanyl-nucleotide exchange factor activity		
11453	_	OsABC1-2, OsAbc1-2	_	ABC1 domain-containing gene 2		osabc1-2, osabc1-2'	2		 Tolerance and resistance - Stress tolerance	Os02g0575500	LOC_Os02g36570.1				GO:0009941 - chloroplast envelope, GO:0016772 - transferase activity, transferring phosphorus-containing groups		
11454	_	ONAC001, ONAC1	_	NAC domain-containing protein 001, NAC domain-containing protein 1	_		9	LOC_Os09g33490.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0509100	LOC_Os09g33490.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent	TO:0006001 - salt tolerance	
11455	_	ONAC003, ONAC3, ONAC016, ONAC16, SNAC3, OsSND3, SND3, OsNAC006, NAC006, ONAC066	_	NAC domain-containing protein 003, NAC domain-containing protein 3, NAC domain-containing protein 16, stress-responsive NAC transcription factor 3, SECONDARY WALL-ASSOCIATED NAC PROTEIN3	_	osnac006, osnac006_1, osnac006_2	1	NCBI SRA database accession number: PRJNA603607. ONAC066 in Liu et al. 2018. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0020096: mineral and ion transport trait. TO:0020076: phenolic compound content.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0191300	LOC_Os01g09550.1, LOC_Os01g09550.2, LOC_Os01g09550.4, LOC_Os01g09550.3				GO:0009739 - response to gibberellin stimulus, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009733 - response to auxin stimulus, GO:0050832 - defense response to fungus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010109 - regulation of photosynthesis, GO:0046685 - response to arsenic, GO:0030104 - water homeostasis	TO:0000095 - osmotic response sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0002667 - abscisic acid content, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0001016 - relative chlorophyll content, TO:0000340 - total soluble sugar content, TO:0000598 - protein content, TO:0000259 - heat tolerance, TO:0006002 - proline content, TO:0000290 - flavonoid content, TO:0000136 - relative water content, TO:0001034 - relative plant height, TO:0000644 - relative root dry weight, TO:0000636 - relative shoot dry weight, TO:0000325 - soluble protein content, TO:0000153 - relative yield, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
11457	_	ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52	_	NAC domain-containing protein 005, NAC domain-containing protein 5, NAC domain-containing protein 35, NAC domain-containing protein 46, NAC domain-containing protein 52	_		8	LOC_Os08g42400.	 Other	Os08g0535800	LOC_Os08g42400.1, LOC_Os08g42400.2, LOC_Os08g42400.3				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11458	NAC6	ONAC006, ONAC6, DLN95, OsDLN95	NAC DOMAIN-CONTAINING PROTEIN 6	NAC domain-containing protein 006, NAC domain-containing protein 6, DLN repressor 95, DLN motif protein 95	NAC DOMAIN-CONTAINING PROTEIN 6		3		 Tolerance and resistance - Insect resistance,  Other	Os03g0624600	LOC_Os03g42630.1				GO:0002213 - defense response to insect, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000205 - white-backed planthopper resistance	
11459	_	ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1, DLN157, OsDLN157	_	NAC domain-containing protein 007, NAC domain-containing protein 7, SECONDARY WALL ASSOCIATED NAC DOMAIN PROTEIN 1, SECONDARY WALL NAC DOMAIN PROTEIN 1, secondary wall NAC transcription factor 1, secondary wall-associated NAC 1, no apical meristem, DLN repressor 157, DLN motif protein 157	_		6	JN634070. the orthologue of the rice NAC Secondary-wall Thickening factor (NST) transcription factor. the rice orthologue of NST3/SND1 from Arabidopsis.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0131700	LOC_Os06g04090.1				GO:0009834 - secondary cell wall biogenesis, GO:0010047 - fruit dehiscence, GO:0009901 - anther dehiscence, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009809 - lignin biosynthetic process, GO:0009414 - response to water deprivation	TO:0000206 - leaf angle, TO:0000333 - sugar content, TO:0000731 - lignin content, TO:0000276 - drought tolerance, TO:0000499 - flower anatomy and morphology trait, TO:0000733 - lignin biosynthesis trait	
11460	_	ONAC008, ONAC8, NAC8	_	NAC domain-containing protein 008, NAC domain-containing protein 8	_		4		 Other	Os04g0515900	LOC_Os04g43560.1				GO:0003677 - DNA binding, GO:0009609 - response to symbiotic bacterium, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009617 - response to bacterium		
11461	Y37	NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, OsNAC092, NAC092, OsNAC92, NAC92	YELLOW 37	NAC domain-containing protein 011, NAC domain-containing protein 11, miR164-targeted NAC4, Oryza miR164-targeted NAC4, Yellow37, Yellow 37, DLN repressor 172, DLN motif protein 172	NAC DOMAIN-CONTAINING PROTEIN 11	osnac092	6	a target gene of miR164a. miR164c target gene. OsNAC1 in Ma et al. 2013, Borna et al. 2022. OsNAC092 in Lin et al. 2022. GO:1990641: response to iron ion starvation. GO:1900057: positive regulation of leaf senescence. GO:2000028:regulation of photoperiodism, flowering. GO:0080148: negative regulation of response to water deprivation. GO:0072593: reactive oxygen species metabolic process.	 Reproductive organ - Heading date,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Yield and productivity	Os06g0675600	LOC_Os06g46270.1				GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0010150 - leaf senescence, GO:0010942 - positive regulation of cell death, GO:0006995 - cellular response to nitrogen starvation, GO:0045454 - cell redox homeostasis, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0003677 - DNA binding, GO:0055072 - iron ion homeostasis, GO:0009739 - response to gibberellin stimulus, GO:0048573 - photoperiodism, flowering, GO:0009408 - response to heat, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000224 - iron sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000249 - leaf senescence, TO:0000136 - relative water content, TO:0001016 - relative chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0000137 - days to heading, TO:0000276 - drought tolerance, TO:0000396 - grain yield	PO:0009005 - root , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0001054 - 4 leaf senescence stage 
11462	NAC12	ONAC012, ONAC12	NAC DOMAIN-CONTAINING PROTEIN 12	NAC domain-containing protein 012, NAC domain-containing protein 12	NAC DOMAIN-CONTAINING PROTEIN 12		5		 Other,  Tolerance and resistance - Insect resistance	Os05g0442700	LOC_Os05g37080.1				GO:0002213 - defense response to insect, GO:0009617 - response to bacterium, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009609 - response to symbiotic bacterium, GO:0003677 - DNA binding	TO:0000205 - white-backed planthopper resistance	
11463	NAC13	ONAC013, ONAC13, ONAC064, ONA064, DLN53, OsDLN53	NAC DOMAIN-CONTAINING PROTEIN 13	NAC domain-containing protein 013, NAC domain-containing protein 13, NAC domain-containing protein 64, DLN repressor 53, DLN motif protein 53	NAC DOMAIN-CONTAINING PROTEIN 13		2		 Other	Os02g0252200	LOC_Os02g15340.1				GO:0005634 - nucleus, GO:0010455 - positive regulation of cell fate commitment, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048829 - root cap development		
11464	NAC14	ONAC014, ONAC14, OsNAC14, NAC14, OsNAC68, NAC68	NAC DOMAIN-CONTAINING PROTEIN 14	NAC domain-containing protein 014, NAC domain-containing protein 14	NAC DOMAIN-CONTAINING PROTEIN 14	osnac14, osbnac68	1	OsNAC68 in Xin et al. 2021. likely to be a candidate gene for qLNA1-2 (N accumulation under low N conditions), qHNA1 (N accumulation under high N conditions), and qLNUE1 ( NUE under low N conditions). GO:0140013: meiotic nuclear division. GO:1901698: response to nitrogen compound.  TO:0020093: nitrogen content.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Other,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0675800	LOC_Os01g48446.1				GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0042594 - response to starvation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0080134 - regulation of response to stress, GO:0009414 - response to water deprivation, GO:0031347 - regulation of defense response, GO:0009651 - response to salt stress, GO:0006808 - regulation of nitrogen utilization, GO:0006282 - regulation of DNA repair, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0000040 - panicle length, TO:0000371 - yield trait, TO:0000455 - seed set percent, TO:0000153 - relative yield, TO:0006001 - salt tolerance, TO:0000592 - 1000-dehulled grain weight, TO:0000011 - nitrogen sensitivity, TO:0002759 - grain number, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
11465	NAC15	OsNAC15, ONAC015, ONAC15, ONAC069, ONAC69	NAC DOMAIN-CONTAINING PROTEIN 15	NAC domain-containing protein 015, NAC domain-containing protein 15, NAC domain-containing protein 69	NAC DOMAIN-CONTAINING PROTEIN 15	osnac15-1, osnac15-2	7	a target of osa-miR1846 (osa-miR1846a-5p and osa-miR1846b-5p). TO:0006059: cadmium content trait. TO:1000056: shoot system cadmium content. TO:1000030: root system cadmium content. TO:0006053: zinc concentration. GO: 0120127: response to zinc ion starvation. GO:1990641: response to iron ion starvation. GO:0090551: response to manganese starvation. GO:0120126: response to copper ion starvation. GO:0001216: DNA-binding transcription activator activity.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Other	Os07g0684800	LOC_Os07g48550.1				GO:0003700 - transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0046686 - response to cadmium ion, GO:0015691 - cadmium ion transport, GO:0010233 - phloem transport, GO:0030912 - response to deep water, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000524 - submergence tolerance, TO:0000227 - root length, TO:0000644 - relative root dry weight, TO:0000636 - relative shoot dry weight, TO:0000351 - zinc sensitivity	PO:0009005 - root 
11466	NAC17	ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111	NAC DOMAIN-CONTAINING PROTEIN 17	NAC domain-containing protein 017, NAC domain-containing protein 17, NAC domain-containing protein 30	NAC DOMAIN-CONTAINING PROTEIN 17		11	OsNAC111 in Yokotani et al. 2014.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance,  Coloration - Others	Os11g0154500	LOC_Os11g05614.1				GO:0003677 - DNA binding, GO:0009609 - response to symbiotic bacterium, GO:0005634 - nucleus, GO:0009617 - response to bacterium, GO:0043473 - pigmentation, GO:0030912 - response to deep water, GO:0050832 - defense response to fungus, GO:0051607 - defense response to virus, GO:0009698 - phenylpropanoid metabolic process, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000020 - black streak dwarf virus resistance, TO:0000074 - blast disease, TO:0000386 - rice ragged stunt virus resistance, TO:0000624 - allelopathic effect, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000148 - viral disease resistance	
11467	NAC18	ONAC018, ONAC18, OsSWN4	NAC DOMAIN-CONTAINING PROTEIN 18	NAC domain-containing protein 018, NAC domain-containing protein 18, secondary wall NAC transcription factor 4, secondary wall-associated NAC 4, SECONDARY WALL NAC DOMAIN PROTEIN 4	NAC DOMAIN-CONTAINING PROTEIN 18		10	JN634073. LOC_Os10g38834.	 Other	Os10g0532000 	LOC_Os10g38834.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0010200 - response to chitin, GO:0003677 - DNA binding		
11468	NAC19	ONAC019, ONAC19	NAC DOMAIN-CONTAINING PROTEIN 19	NAC domain-containing protein 019, NAC domain-containing protein 19	NAC DOMAIN-CONTAINING PROTEIN 19		6	LOC_Os06g01230.	 Other	Os06g0101800	LOC_Os06g01230.1, LOC_Os06g01230.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11469	NAC21	ONAC021, ONAC21, DLN220, OsDLN220	NAC DOMAIN-CONTAINING PROTEIN 21	NAC domain-containing protein 021, NAC domain-containing protein 21, DLN repressor 220, DLN motif protein 220	NAC DOMAIN-CONTAINING PROTEIN 21		9		 Other	Os09g0295000	LOC_Os09g12380.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11470	NAC22	ONAC022, ONAC22	NAC DOMAIN-CONTAINING PROTEIN 22	NAC domain-containing protein 022, NAC domain-containing protein 22	NAC DOMAIN-CONTAINING PROTEIN 22		3	LOC_Os03g04070.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0133000	LOC_Os03g04070.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11471	NAC25	ONAC025, ONAC25, OsEnS-144, OsNAC025, NAC025	NAC DOMAIN-CONTAINING PROTEIN 25	NAC domain-containing protein 025, NAC domain-containing protein 25, endosperm-specific gene 144	NAC DOMAIN-CONTAINING PROTEIN 25		11		 Other	Os11g0512000 	LOC_Os11g31330.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11472	NAC26	ONAC026, ONAC26, OsEnS-8, DLN11, OsDLN11	NAC DOMAIN-CONTAINING PROTEIN 26	NAC domain-containing protein 026, NAC domain-containing protein 26, endosperm-specific gene 8, DLN repressor 11, DLN motif protein 11	NAC DOMAIN-CONTAINING PROTEIN 26	osnac26, osnac26-1, and osnac26-2	1		 Seed - Morphological traits - Grain shape,  Other,  Seed - Physiological traits - Storage substances	Os01g0393100	LOC_Os01g29840.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0019252 - starch biosynthetic process, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000484 - seed shape, TO:0000598 - protein content, TO:0000696 - starch content, TO:0002653 - endosperm storage protein content	PO:0005360 - aleurone layer , PO:0009089 - endosperm , PO:0009009 - plant embryo 
11474	NAC28	ONAC028, ONAC28	NAC DOMAIN-CONTAINING PROTEIN 28	NAC domain-containing protein 028, NAC domain-containing protein 28	NAC DOMAIN-CONTAINING PROTEIN 28		2	LOC_Os02g34970.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0555300 	LOC_Os02g34970.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0048367 - shoot development, GO:0010089 - xylem development, GO:0043067 - regulation of programmed cell death	TO:0006001 - salt tolerance	
11475	NAC29	ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2, DLN201, OsDLN201	NAC DOMAIN-CONTAINING PROTEIN 29	NAC domain-containing protein 029, NAC domain-containing protein 29, SECONDARY WALL NAC DOMAIN PROTEIN 2, secondary wall NAC transcription factor 2, secondary wall-associated NAC 2, NAC SECONDARY WALL THICKENING PROMOTING1/2, DLN repressor 201, DLN motif protein 201	NAC DOMAIN-CONTAINING PROTEIN 29		8	JN634071. a CESA regulator. GO:2001006: regulation of cellulose biosynthetic process.	 Other	Os08g0115800	LOC_Os08g02300.1				GO:0016020 - membrane, GO:0009809 - lignin biosynthetic process, GO:0010047 - fruit dehiscence, GO:0009834 - secondary cell wall biogenesis, GO:0009617 - response to bacterium, GO:0003677 - DNA binding, GO:0009901 - anther dehiscence, GO:0009609 - response to symbiotic bacterium, GO:0045893 - positive regulation of transcription, DNA-dependent		
11476	NAC31	ONAC031, ONAC31, OsSWN3	NAC DOMAIN-CONTAINING PROTEIN 31	NAC domain-containing protein 031, NAC domain-containing protein 31, secondary wall NAC transcription factor 3, secondary wall-associated NAC 3, SECONDARY WALL NAC DOMAIN PROTEIN 3	NAC DOMAIN-CONTAINING PROTEIN 31		8	JN634072. a CESA regulator. GO:2001006: regulation of cellulose biosynthetic process. GO:1901347: negative regulation of secondary cell wall biogenesis.	 Vegetative organ - Culm,  Tolerance and resistance - Insect resistance,  Other,  Reproductive organ - Inflorescence	Os08g0103900 	LOC_Os08g01330.1				GO:0002213 - defense response to insect, GO:0005634 - nucleus, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0010089 - xylem development, GO:0003677 - DNA binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0080006 - internode patterning, GO:0030308 - negative regulation of cell growth, GO:0009834 - secondary cell wall biogenesis	TO:0000205 - white-backed planthopper resistance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
11477	NAC32	ONAC032, ONAC32, ONAC056, ONAC56	NAC DOMAIN-CONTAINING PROTEIN 32	NAC domain-containing protein 032, NAC domain-containing protein 32, NAC domain-containing protein 56	NAC DOMAIN-CONTAINING PROTEIN 32		2	LOC_Os02g56600.	 Other,  Tolerance and resistance - Stress tolerance	Os02g0810900 	LOC_Os02g56600.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0003677 - DNA binding	TO:0006001 - salt tolerance	
11478	NAC37	ONAC037, ONAC37, OsNTL2, NTL2	NAC DOMAIN-CONTAINING PROTEIN 37	NAC domain-containing protein 037, NAC domain-containing protein 37, NAC membrane-bound transcription factor 2, NAC MTF2	NAC DOMAIN-CONTAINING PROTEIN 37		8	LOC_Os08g06140.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0157900	LOC_Os08g06140.1, LOC_Os08g06140.2, LOC_Os08g06140.3				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048366 - leaf development, GO:0009651 - response to salt stress, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0000655 - leaf development trait, TO:0006001 - salt tolerance	PO:0001050 - leaf development stage 
11479	CUC1	ONAC039, ONAC39, NAC39, OsCUC1, DLN86, OsDLN86	CUP SHAPED COTYLEDON 1	NAC domain-containing protein 039, NAC domain-containing protein 39, CUP SHAPED COTYLEDON1, DLN repressor 86, DLN motif protein 86	NAC DOMAIN-CONTAINING PROTEIN 39		3		 Other	Os03g0327100 	LOC_Os03g21030.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11480	NAC40	ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5, UCIP17, OsUCIP17	NAC DOMAIN-CONTAINING PROTEIN 40	NAC domain-containing protein 040, NAC domain-containing protein 40, NAC domain-containing protein 54, NAC membrane-bound transcription factor 5, NAC MTF5, membrane-bound NAC-like TF 5, OsUBC26 Interact Protein 17	NAC DOMAIN-CONTAINING PROTEIN 40		8	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Other,  Reproductive organ - Heading date	Os08g0562200	LOC_Os08g44820.5, LOC_Os08g44820.1, LOC_Os08g44820.2, LOC_Os08g44820.3, LOC_Os08g44820.4				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0048366 - leaf development, GO:0005634 - nucleus, GO:2000028 - regulation of photoperiodism, flowering, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000655 - leaf development trait	PO:0001050 - leaf development stage , PO:0025034 - leaf 
11481	NAC41	ONAC041, ONAC41, ONAC050, ONAC50	NAC DOMAIN-CONTAINING PROTEIN 41	NAC domain-containing protein 041, NAC domain-containing protein 41, NAC domain-containing protein 50	NAC DOMAIN-CONTAINING PROTEIN 41		1	LOC_Os01g70110.	 Other	Os01g0925400	LOC_Os01g70110.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11482	NAC42	OsNAC42, ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4	NAC DOMAIN-CONTAINING PROTEIN 42	NAC domain-containing protein 042, NAC domain-containing protein 42, NAC domain-containing protein 51, NAC membrane-bound transcription factor 4, NAC MTF4	NAC DOMAIN-CONTAINING PROTEIN 42	osnac42, OsNAC42HapA, OsNAC42HapB, OsNAC42HapC	9	GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0493700 	LOC_Os09g32040.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048366 - leaf development, GO:0009651 - response to salt stress, GO:0009408 - response to heat	TO:0000011 - nitrogen sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000655 - leaf development trait	PO:0001050 - leaf development stage 
11483	NAC45	ONAC045, ONAC45, DLN243, OsDLN243, OsNAM, NAM	NAC DOMAIN-CONTAINING PROTEIN 45	NAC domain-containing protein 045, NAC domain-containing protein 45, DLN repressor 243, DLN motif protein 243, No Apical Meristem	NAC DOMAIN-CONTAINING PROTEIN 45	osnac45, osnac45-14, osnac45-15	11	OsNAM in Chauhan et al. 2019. Functional expressions of OsNAM and OsGRAM in yeast showed enhanced tolerance to various abiotic stresses (Chauhan et al. 2019). GO:1903840: response to arsenite(3-). GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os11g0127600 	LOC_Os11g03370.1				GO:0009609 - response to symbiotic bacterium, GO:0009409 - response to cold, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006970 - response to osmotic stress, GO:0051607 - defense response to virus, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000020 - black streak dwarf virus resistance, TO:0000615 - abscisic acid sensitivity, TO:0000148 - viral disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0020124 - root stele 
11484	NAC47	ONAC047, ONAC47	NAC DOMAIN-CONTAINING PROTEIN 47	NAC domain-containing protein 047, NAC domain-containing protein 47	NAC DOMAIN-CONTAINING PROTEIN 47			AK068153.	 Other								
11485	NAC49	ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57	NAC DOMAIN-CONTAINING PROTEIN 49	NAC domain-containing protein 049, NAC domain-containing protein 49, NAC domain-containing protein 053, NAC domain-containing protein 53, NAC domain-containing protein 057, NAC domain-containing protein 57	NAC DOMAIN-CONTAINING PROTEIN 49		8	AK068393, AK072275, AK071052. AP005657. LOC_Os08g02160.	 Other		LOC_Os08g02160						
11488	NAC55	ONAC055, ONAC55, CRPG64, OsCRPG64	NAC DOMAIN-CONTAINING PROTEIN 55	NAC domain-containing protein 055, NAC domain-containing protein 55, collar region-preferential gene 55	NAC DOMAIN-CONTAINING PROTEIN 55		3	one of five transcription factors downstream of LG1 (Jiang et al. 2023). 	 Tolerance and resistance - Disease resistance,  Other	Os03g0109000 	LOC_Os03g01870.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000020 - black streak dwarf virus resistance	PO:0006012 - leaf collar 
11489	NAC59	ONAC059, ONAC59	NAC DOMAIN-CONTAINING PROTEIN 59	NAC domain-containing protein 059, NAC domain-containing protein 59	NAC DOMAIN-CONTAINING PROTEIN 59		1		 Tolerance and resistance - Insect resistance,  Other	Os01g0862800	LOC_Os01g64310.1, LOC_Os01g64310.2				GO:0009617 - response to bacterium, GO:0002213 - defense response to insect, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009609 - response to symbiotic bacterium, GO:0003677 - DNA binding, GO:0009620 - response to fungus	TO:0000205 - white-backed planthopper resistance	
11490	NAC61	ONAC061, ONAC61	NAC DOMAIN-CONTAINING PROTEIN 61	NAC domain-containing protein 061, NAC domain-containing protein 61	NAC DOMAIN-CONTAINING PROTEIN 61		10	LOC_Os10g21560.	 Other,  Tolerance and resistance - Stress tolerance	Os10g0359500 	LOC_Os10g21560.1, LOC_Os10g21560.2				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
11491	NAC62	ONAC062, ONAC62, OsSND2, SND2	NAC DOMAIN-CONTAINING PROTEIN 62	NAC domain-containing protein 062, NAC domain-containing protein 62, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN2, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2	NAC DOMAIN-CONTAINING PROTEIN 62	snd2-c1, snd2-c2	5	LOC_Os05g48850. a close homolog of AtSND2. TO:0006064: rolled leaf. TO:0000993: cellulose content. GO:2000652: regulation of secondary cell wall biogenesis. GO:2001008: positive regulation of cellulose biosynthetic process. O:0030123: panicle inflorescence.	 Other,  Vegetative organ - Leaf	Os05g0563000 	LOC_Os05g48850.1				GO:0030244 - cellulose biosynthetic process, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009834 - secondary cell wall biogenesis, GO:0006355 - regulation of transcription, DNA-dependent		PO:0020142 - stem internode 
11492	NAC63	ONAC063, ONAC63	NAC DOMAIN-CONTAINING PROTEIN 63	NAC domain-containing protein 063, NAC domain-containing protein 63	NAC DOMAIN-CONTAINING PROTEIN 63		8		 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os08g0436700 	LOC_Os08g33910.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
11493	NAC65	ONAC065, ONAC65	NAC DOMAIN-CONTAINING PROTEIN 65	NAC domain-containing protein 065, NAC domain-containing protein 65	NAC DOMAIN-CONTAINING PROTEIN 65		7	LOC_Os07g27330.	 Other	Os07g0456900	LOC_Os07g27330.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11494	NAC66	ONAC066, ONAC66	NAC DOMAIN-CONTAINING PROTEIN 66	NAC domain-containing protein 066, NAC domain-containing protein 66	NAC DOMAIN-CONTAINING PROTEIN 66	onac066-1	3	GO:1902884: positive regulation of response to oxidative stress. GO:1902584: positive regulation of response to water deprivation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0777000 	LOC_Os03g56580.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000340 - total soluble sugar content, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content	
11495	NAC70	ONAC070, ONAC70, OsNTL6, NTL6, OsNAC78	NAC DOMAIN-CONTAINING PROTEIN 70	NAC domain-containing protein 070, NAC domain-containing protein 70, NAC membrane-bound transcription factor 6, NAC MTF6	NAC DOMAIN-CONTAINING PROTEIN 70	osntl6	2	OsNAC78 in Xie et al. 2020. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os02g0822400	LOC_Os02g57650.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050777 - negative regulation of immune response, GO:0005783 - endoplasmic reticulum, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0034976 - response to endoplasmic reticulum stress, GO:0048366 - leaf development	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000655 - leaf development trait, TO:0000074 - blast disease	PO:0001050 - leaf development stage 
11496	NAC72	ONAC072, ONAC72, DLN228, OsDLN228	NAC DOMAIN-CONTAINING PROTEIN 72	NAC domain-containing protein 072, NAC domain-containing protein 72, DLN repressor 228, DLN motif protein 228	NAC DOMAIN-CONTAINING PROTEIN 72		9		 Other	Os09g0497900 	LOC_Os09g32260.2, LOC_Os09g32260.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
11497	NAC73	ONAC073, ONAC73, OsSND2, SND2	NAC DOMAIN-CONTAINING PROTEIN 73	NAC domain-containing protein 073, NAC domain-containing protein 73, SECONDARY WALL-ASSOCIATED NAC PROTEIN2	NAC DOMAIN-CONTAINING PROTEIN 73		1		 Other	Os01g0672100 	LOC_Os01g48130.2, LOC_Os01g48130.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11498	NAC75	ONAC075, ONAC75	NAC DOMAIN-CONTAINING PROTEIN 75	NAC domain-containing protein 075, NAC domain-containing protein 75	NAC DOMAIN-CONTAINING PROTEIN 75		1	LOC_Os01g66490.	 Other	Os01g0888300 	LOC_Os01g66490.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
11499	NAC60	ONAC060, ONAC60, OMTN3, OsNAC60, DLN265, OsDLN265	NAC DOMAIN-CONTAINING PROTEIN 60	NAC domain-containing protein 060, NAC domain-containing protein 60, miR164-targeted NAC3, Oryza miR164-targeted NAC3, DLN repressor 265, DLN motif protein 265	NAC DOMAIN-CONTAINING PROTEIN 60	osnac60	12	a target gene of miR164a. miR164c target gene. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os12g0610600	LOC_Os12g41680.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0003677 - DNA binding, GO:0042742 - defense response to bacterium, GO:0055072 - iron ion homeostasis, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010942 - positive regulation of cell death	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000224 - iron sensitivity	PO:0009005 - root 
11500	_	OsCMO	_	choline monooxygenase			6	AJ578494. LOC_Os06g48510.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0698785	LOC_Os06g48510.1				GO:0031456 - glycine betaine biosynthetic process, GO:0005506 - iron ion binding, GO:0016708 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, GO:0019439 - aromatic compound catabolic process, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11501	TAR1	OsTAR1, FBL	TRYPTOPHAN AMINOTRANSFERASE 1	Trp aminotransferase 1, FIBLIKE, FIB LIKE, TRYPTOPHAN AMINOTRANSFERASE RELATED 1	TRYPTOPHAN AMINOTRANSFERASE 1	ostar1	5	a paralog of FIB. orthologous to TAA1/TAR1/TAR2 of Arabidopsis and VT2/VT2-like of maize. TSG1 homolog. PO:0030104: caryopsis fruit.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Biochemical character	Os05g0169300	LOC_Os05g07720.1				GO:0009641 - shade avoidance, GO:0009734 - auxin mediated signaling pathway, GO:0050362 - L-tryptophan:2-oxoglutarate aminotransferase activity, GO:0047312 - L-phenylalanine:pyruvate aminotransferase activity, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity, GO:0080099 - L-methionine:2-oxoglutarate aminotransferase activity, GO:0050048 - L-leucine:2-oxoglutarate aminotransferase activity, GO:0009958 - positive gravitropism, GO:0080100 - L-glutamine:2-oxoglutarate aminotransferase activity, GO:0048825 - cotyledon development, GO:0005783 - endoplasmic reticulum, GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity, GO:0005737 - cytoplasm, GO:0009723 - response to ethylene stimulus, GO:0080022 - primary root development, GO:0030170 - pyridoxal phosphate binding, GO:0016846 - carbon-sulfur lyase activity, GO:0080098 - L-tyrosine:pyruvate aminotransferase activity, GO:0004838 - L-tyrosine:2-oxoglutarate aminotransferase activity, GO:0080097 - L-tryptophan:pyruvate aminotransferase activity, GO:0010087 - phloem or xylem histogenesis, GO:0010078 - maintenance of root meristem identity, GO:0048366 - leaf development, GO:0009684 - indoleacetic acid biosynthetic process, GO:0048467 - gynoecium development, GO:0010588 - cotyledon vascular tissue pattern formation, GO:0009960 - endosperm development, GO:0009851 - auxin biosynthetic process	TO:0002681 - leaf curling, TO:0000163 - auxin sensitivity, TO:0000266 - chalky endosperm, TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0000391 - seed size	PO:0025281 - pollen , PO:0007633 - endosperm development stage 
11503	SYP71	OsSYP71	_				5	a Qc-SNARE protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0553700	LOC_Os05g48020.1				GO:0006979 - response to oxidative stress, GO:0006886 - intracellular protein transport, GO:0048278 - vesicle docking, GO:0006906 - vesicle fusion, GO:0012505 - endomembrane system, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0016021 - integral to membrane, GO:0031201 - SNARE complex, GO:0050832 - defense response to fungus	TO:0002657 - oxidative stress, TO:0000074 - blast disease	
11504	_	OsSYP72	_					a Qc-SNARE protein.									
11505	_	OsBET11	_					a Qc-SNARE protein.									
11506	_	OsBET12	_					a Qc-SNARE protein.									
11507	_	OsSYP51	_					a Qc-SNARE protein.									
11508	_	OsSYP52	_					a Qc-SNARE protein.									
11509	_	OsSYP61	_					a Qc-SNARE protein.									
11510	_	OsSYP62	_					a Qc-SNARE protein.									
11511	_	OsUSE11	_					a Qc-SNARE protein.									
11512	_	OsUSE12	_					a Qc-SNARE protein.									
11513	_	OsSFT11	_					a Qc-SNARE protein.									
11514	_	OsSFT12	_					a Qc-SNARE protein.									
11515	MPG1	OsMPG1, OsVTC1-1, VTC1-1	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 1	mannose-1-phosphate guanyl transferase 1	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 1	vtc1-1	1	JN408497. Q941T9. one of three rice GMPase (GDP-mannose pyrophosphorylase) homologs. GO:2000082: regulation of L-ascorbic acid biosynthetic process. TO:0000932: mannose content.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0847200	LOC_Os01g62840.1				GO:0019853 - L-ascorbic acid biosynthetic process, GO:0009298 - GDP-mannose biosynthetic process, GO:0009646 - response to absence of light, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0052482 - cell wall thickening during defense response, GO:0060359 - response to ammonium ion, GO:0019430 - removal of superoxide radicals, GO:0006979 - response to oxidative stress, GO:0009725 - response to hormone stimulus, GO:0006970 - response to osmotic stress, GO:0004475 - mannose-1-phosphate guanylyltransferase activity, GO:0009742 - brassinosteroid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus, GO:0050832 - defense response to fungus, GO:0030244 - cellulose biosynthetic process, GO:0010193 - response to ozone, GO:0009058 - biosynthetic process, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0005525 - GTP binding	TO:0000075 - light sensitivity, TO:0002657 - oxidative stress, TO:0006006 - monosaccharide content, TO:0000074 - blast disease, TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000401 - plant growth hormone sensitivity	PO:0025034 - leaf 
11516	MPG2	OsMPG2	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 2	mannose-1-phosphate guanyl transferase 2	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 2		3	JN408498.	 Biochemical character	Os03g0208900	LOC_Os03g11050.1, LOC_Os03g11050.3				GO:0009058 - biosynthetic process, GO:0016779 - nucleotidyltransferase activity, GO:0005777 - peroxisome, GO:0046686 - response to cadmium ion		
11517	MPG3	OsMPG3, OsVTC1-3, VTC1-3	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 3	mannose-1-phosphate guanyl transferase 3	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 3		3	JN408499. Q84JH5. one of three rice GMPase (GDP-mannose pyrophosphorylase) homologs. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Plant growth activity	Os03g0268400	LOC_Os03g16150.3, LOC_Os03g16150.2, LOC_Os03g16150.1				GO:0009408 - response to heat, GO:0005525 - GTP binding, GO:0004475 - mannose-1-phosphate guanylyltransferase activity, GO:0009298 - GDP-mannose biosynthetic process, GO:0030244 - cellulose biosynthetic process, GO:0010193 - response to ozone, GO:0009651 - response to salt stress, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0060359 - response to ammonium ion, GO:0009646 - response to absence of light, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009873 - ethylene mediated signaling pathway	TO:0006001 - salt tolerance, TO:0001007 - coleoptile length, TO:0000605 - hydrogen peroxide content, TO:0000173 - ethylene sensitivity	PO:0009005 - root 
11518	MPG4	OsMPG4, OsVTC1-8, VTC1-8	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 4	mannose-1-phosphate guanyl transferase 4	MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 4		8	JN408500. Q6Z9A3. one of three rice GMPase (GDP-mannose pyrophosphorylase) homologs.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0237200	LOC_Os08g13930.1, LOC_Os08g13930.2				GO:0009298 - GDP-mannose biosynthetic process, GO:0004475 - mannose-1-phosphate guanylyltransferase activity, GO:0060359 - response to ammonium ion, GO:0009753 - response to jasmonic acid stimulus, GO:0005525 - GTP binding, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0030244 - cellulose biosynthetic process, GO:0042742 - defense response to bacterium, GO:0010193 - response to ozone		
11519	HSP90	OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94	RICE 90KDA HEAT SHOCK PROTEIN	rice 90kDa heat shock protein, heat shock protein90, heat shock protein 90, glucose-regulated protein 94, endoplasmin	RICE 90KDA HEAT SHOCK PROTEIN		6	AB037681.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0716700	LOC_Os06g50300.1				GO:0009306 - protein secretion, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0009735 - response to cytokinin stimulus, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009934 - regulation of meristem structural organization, GO:0010075 - regulation of meristem growth, GO:0046686 - response to cadmium ion, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0005783 - endoplasmic reticulum, GO:0042026 - protein refolding, GO:0009408 - response to heat, GO:0003773 - heat shock protein activity	TO:0000112 - disease resistance, TO:0000259 - heat tolerance, TO:0000167 - cytokinin sensitivity	
11520	SGT1	OsSgt1, OsSGT1, Os SGT1	SUPPRESSOR OF THE G2 ALLELE OF SKP1	suppressor of the G2 allele of skp1	SUPPRESSOR OF THE G2 ALLELE OF SKP1		1	Q0JL44. AF192467. BAF05534. AAF18438. a subunit of the SCF ubiquitin ligase complex. a component in the OsRac1-mediated complex. GO:1901001: negative regulation of response to salt stress. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0624500	LOC_Os01g43540.1				GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm	TO:0000175 - bacterial blight disease resistance, TO:0000112 - disease resistance, TO:0000074 - blast disease, TO:0006001 - salt tolerance	
11521	SOD2	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn, OsCSD3, CSD3, CuZnSOD3, OsCSD2, CSD2, Cu/Zn-SOD2	SUPEROXIDE DISMUTASE 2	superoxide dismutase 2, Copper/zinc Superoxide Dismutase 2, copper-zinc superoxide dismutase 2	SUPEROXIDE DISMUTASE 2		3	OsCSD2 in Zheng  et al. 2024. the candidate gene for qSL3 regarding seed storability. GO:0120126: response to copper ion starvation.	 Seed - Physiological traits - Longevity,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0219200	LOC_Os03g11960.4, LOC_Os03g11960.1, LOC_Os03g11960.2, LOC_Os03g11960.3				GO:0005507 - copper ion binding, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0006979 - response to oxidative stress, GO:0016020 - membrane, GO:0009687 - abscisic acid metabolic process, GO:0005737 - cytoplasm, GO:0005773 - vacuole, GO:0005634 - nucleus, GO:0004784 - superoxide dismutase activity, GO:0019430 - removal of superoxide radicals, GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress, GO:0005777 - peroxisome	TO:0002667 - abscisic acid content, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000435 - seed longevity	PO:0009009 - plant embryo 
11522	SOD4	OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3, sodCp, OssodCp, OsCu/ZnSOD3, CuZnSOD2, OsSOD1	SUPEROXIDE DISMUTASE 4	superoxide dismutase 4, Cu-dependent SOD 2	SUPEROXIDE DISMUTASE 4		8	P93407. D85239. AB026724. OsCu/Zn-SOD. OsCSD2 in Andres-Borderia et al. 2017, Navarro et al. 2021. Cu/ZnSOD3 in Huang et al. 2018, Song et al. 2021. OsSOD1 in Lou et al. 20230. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0561700	LOC_Os08g44770.2, LOC_Os08g44770.1				GO:0004784 - superoxide dismutase activity, GO:0046688 - response to copper ion, GO:0009416 - response to light stimulus, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0008270 - zinc ion binding, GO:0010446 - response to alkalinity, GO:0005507 - copper ion binding, GO:0009579 - thylakoid, GO:0048046 - apoplast, GO:0010039 - response to iron ion, GO:0019430 - removal of superoxide radicals, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000481 - alkali sensitivity	PO:0025034 - leaf 
11523	_	OsPMS1, OsPMS2	_	mismatch repair protein OsPMS1			2			Os02g0592300	LOC_Os02g37920.1				GO:0006298 - mismatch repair, GO:0007131 - reciprocal meiotic recombination, GO:0005524 - ATP binding, GO:0032407 - MutSalpha complex binding, GO:0030983 - mismatched DNA binding, GO:0003697 - single-stranded DNA binding, GO:0048316 - seed development, GO:0016887 - ATPase activity, GO:0032389 - MutLalpha complex, GO:0009555 - pollen development		
11524	MLH1	OsMLH1	MUTL-HOMOLOG 1	MutL-homolog 1	MUTL-HOMOLOG 1	Osmlh1, Osmlh1-1, Osmlh1-2	1		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Female sterility	Os01g0958900	LOC_Os01g72880.1				GO:0016887 - ATPase activity, GO:0007131 - reciprocal meiotic recombination, GO:0006298 - mismatch repair, GO:0048229 - gametophyte development, GO:0009553 - embryo sac development, GO:0051321 - meiotic cell cycle, GO:0048236 - plant-type spore development, GO:0000795 - synaptonemal complex, GO:0005712 - chiasma, GO:0003697 - single-stranded DNA binding, GO:0005524 - ATP binding, GO:0030983 - mismatched DNA binding, GO:0032389 - MutLalpha complex, GO:0032407 - MutSalpha complex binding, GO:0032390 - MutLbeta complex	TO:0000437 - male sterility, TO:0000358 - female sterility	
11525	_	OsRINGC2-1, RINGC2-1	_	RING-C2 type protein 1			11	LOC_Os11g01190.		Os11g0102800					GO:0000166 - nucleotide binding, GO:0030014 - CCR4-NOT complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0003723 - RNA binding		
11526	_	OsRINGC2-2, OsRING307, RING307	_	RING-C2 type protein 2, RING-type E3 ubiquitin ligase 307			12			Os12g0102400	LOC_Os12g01190.2				GO:0000166 - nucleotide binding, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
11527	_	OsLRP, OsLRR1, LRR1	_	leucine-rich repeat protein, extracellular leucine-rich repeat (eLRR) domain protein 1, LEUCINE-RICH REPEAT PROTEIN 1			1	LOC_Os01g59440. AF364178. XB21 interacting protein (XB21IP).	 Tolerance and resistance - Disease resistance	Os01g0809300	LOC_Os01g59440.1, LOC_Os01g59440.2, LOC_Os01g59440.3				GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
11528	HIR1	OsHIR1, OsHSI1	HYPERSENSITIVE-INDUCED REACTION PROTEIN 1	hypersensitive-induced reaction protein 1	HYPERSENSITIVE-INDUCED REACTION PROTEIN 1		8	AF374475. an OsHIR1-interacting protein. TO:0006059: cadmium content trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0398400	LOC_Os08g30790.1, LOC_Os08g30790.2, LOC_Os08g30790.3				GO:0015691 - cadmium ion transport, GO:0005773 - vacuole, GO:0009507 - chloroplast, GO:0005886 - plasma membrane		
11529	SG2	OsSERK1, SERK1, OsBAK1, BAK1, OsSERK1/OsBAK1, OsBISERK1, BISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, OsSG2	SMALL GRAIN 2	somatic embryogenesis receptor-like kinase 1, somatic embryogenesis receptor kinase 1, SERK family receptor-like protein kinase 1, BRI1-associated receptor kinase 1, BTH-induced SERK1, benzothiadiazole-induced SERK1, bri1-associated receptor kinase 1 (BAK1) homologue 1, small grain 2, BRASSINOSTEROID RECEPTOR- ASSOCIATED KINASE 1	BENZOTHIADIAZOLE-INDUCED SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	sg2, bak1	8	OsBISERK1 in Hu et al. 2005, Song et al. 2008. OsSERK1 in to et al. 2005, Feng et al. 2022. AY463361. BI118743. AB188246, AB188247. a rice ortholog of Arabidopsis SERK1/SERK2/BAK1. GO:0140426: PAMP-triggered immunity signalling pathway.	 Character as QTL - Yield and productivity,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Biochemical character	Os08g0174700	LOC_Os08g07760.1				GO:0010942 - positive regulation of cell death, GO:0052544 - callose deposition in cell wall during defense response, GO:0050832 - defense response to fungus, GO:0009741 - response to brassinosteroid stimulus, GO:0002679 - respiratory burst during defense response, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0032502 - developmental process, GO:0042742 - defense response to bacterium, GO:0009742 - brassinosteroid mediated signaling, GO:0042127 - regulation of cell proliferation, GO:0000165 - MAPKKK cascade, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0002253 - activation of immune response	TO:0000129 - false smut disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0002759 - grain number, TO:0000207 - plant height, TO:0002688 - leaf lamina joint bending, TO:0000074 - blast disease, TO:0002677 - brassinosteroid sensitivity, TO:0000734 - grain length, TO:0000255 - sheath blight disease resistance, TO:0000397 - grain size, TO:0000206 - leaf angle	
11530	VIT1	OsVIT2, OsVIT1, VIT2	VACUOLAR IRON TRANSPORTER 1	Vacuolar Iron Transporter 2, vacuolar Fe and Mn transporter 1, Vacuolar Fe transporter 1	VACUOLAR IRON TRANSPORTER 1	osvit2-1	9	Q6ERE5. OsVIT2 in Zhang et al. 2012, Liu et al. 2020, Regon et al. 2022, Nguyen et al. 2022. TO:0006059: cadmium content trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0396900	LOC_Os09g23300.1				GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0055072 - iron ion homeostasis, GO:0015691 - cadmium ion transport, GO:0046686 - response to cadmium ion, GO:0005774 - vacuolar membrane, GO:0010040 - response to iron(II) ion, GO:0006811 - ion transport	TO:0000224 - iron sensitivity, TO:0000074 - blast disease	
11531	_	OsPE	_	polyembryo, Polyembryony, polyembryonic mutant		OsPE 1, OsPE 2, OsPE 3	3		 Seed - Morphological traits - Embryo	Os03g0241300	LOC_Os03g13810.1, LOC_Os03g13810.2, LOC_Os03g13810.3						
11532	LYCE	OsLCYe, OsLCYepsilon, LCYepsilon, epsilon-LCY, OsLYCE	LYCOPENE EPSILON-CYCLASE	e-ionone-forming lycopene cyclase, lycopene e-cyclase, epsilon-ionone-forming lycopene cyclase, lycopene epsilon-cyclase	LYCOPENE EPSILON-CYCLASE		1		 Coloration - Others,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0581300	LOC_Os01g39960.1				GO:0016123 - xanthophyll biosynthetic process, GO:0016120 - carotene biosynthetic process, GO:0009416 - response to light stimulus, GO:0016117 - carotenoid biosynthetic process, GO:0045435 - lycopene epsilon cyclase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009414 - response to water deprivation	TO:0000075 - light sensitivity, TO:0000276 - drought tolerance	
11533	LCYB	OsLCYbeta, OsLYCb, OsLCY, beta-OsLCY, beta-LCY	LYCOPENE BETA-CYCLASE	lycopene e-cyclase, lycopene beta-cyclase	LYCOPENE BETA-CYCLASE		2	AP005849.	 Biochemical character,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os02g0190600	LOC_Os02g09750.1				GO:0045436 - lycopene beta cyclase activity, GO:0009408 - response to heat, GO:0009416 - response to light stimulus, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016117 - carotenoid biosynthetic process, GO:0016120 - carotene biosynthetic process	TO:0000259 - heat tolerance, TO:0000075 - light sensitivity	
11534	NGLF	OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM	NARROW GRAIN AND LOW FERTILITY	narrow grain and low fertility, arginase, Osarginase	ARGINASE	nglf-1, nglf-2	4	LOC_Os04g01590. an arginine hydrolysis enzyme. HM369061.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Biochemical character	Os04g0106300	LOC_Os04g01590.1				GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0050897 - cobalt ion binding, GO:0004053 - arginase activity, GO:0006527 - arginine catabolic process, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0042742 - defense response to bacterium	TO:0002730 - grain shape, TO:0000050 - inflorescence branching, TO:0002759 - grain number, TO:0006001 - salt tolerance	
11535	SPL1	OsSPL1	SPHINGOSINE-1-PHOSPHATE LYASE 1	Sphingosine-1-Phoshpate Lyase 1	SPHINGOSINE-1-PHOSPHATE LYASE 1				 Tolerance and resistance - Stress tolerance								
11536	DDF1	OsDDF1	DWARF AND DEFORMED FLOWER 1	Dwarf and deformed flower 1, dwarf and deformed flower 1-1		ddf1-1	6	an F-box protein. DDF1 was preliminarily mapped in a region between markers RM588 and RM587 on chromosome 6 with the genetic distances of 3.8 cM and 2.4 cM to the two markers, respectively. GO:0061458: reproductive system development. TO:0000756: stem internode morphology trait. TO:0000821: leaf vein size. TO:0000820: leaf vein morphology trait. TO:0000862: floral organ morphology trait. TO:1000024: palea morphology trait.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os06g0139000	LOC_Os06g04710.1				GO:0005730 - nucleolus, GO:0010093 - specification of floral organ identity, GO:0051302 - regulation of cell division, GO:0001558 - regulation of cell growth	TO:0000576 - stem length, TO:0000614 - lemma shape, TO:0000437 - male sterility, TO:0000223 - pistil anatomy and morphology trait, TO:0006020 - shoot apical meristem development, TO:0002692 - root meristem development, TO:0000470 - vascular tissue related trait, TO:0000472 - vascular bundle number, TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0006032 - panicle size, TO:0000215 - stamen anatomy and morphology trait, TO:0000040 - panicle length, TO:0000306 - root thickness, TO:0000227 - root length, TO:0000258 - leaf thickness, TO:0000135 - leaf length, TO:0006009 - lodicule anatomy and morphology trait, TO:0000145 - internode length, TO:0000339 - stem thickness	
11538	PSTOL1	Pstol1, OsPSTOL1, OsPSTOL, PSTOL, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO	P-STARVATION TOLERANCE 1	phosphorus-starvation tolerance 1, protein kinase Pstol1, P-STarvation TOLerance 1, phosphorus uptake 1, Phosphorus uptake1		OsPSTOL1-J, OsPSTOL1-K, OsPSTOL1-KS1, OsPSTOL1-KS2	12	BAK26566. AB458444. A major quantitative trait locus for phosphorus-deficiency tolerance, Pup1, was identified in the traditional aus-type rice variety Kasalath. PSTOL1 is a Pup1-specific protein kinase gene and the most obvious candidate gene for Pup1. japonica-type Nipponbare rice varieties naturally lacks the PSTOL1 gene. TO:0000985: root system morphology trait. GO:1904383: response to sodium phosphate.TO:0020100: nitrate uptake.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root			GR:0060610			GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0016036 - cellular response to phosphate starvation, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0031667 - response to nutrient levels, GO:0006995 - cellular response to nitrogen starvation, GO:0004674 - protein serine/threonine kinase activity, GO:0005737 - cytoplasm, GO:0048364 - root development, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity, TO:0000480 - nutrient sensitivity, TO:0000143 - relative biomass, TO:0000516 - relative root length, TO:0000511 - phosphorus uptake, TO:0000168 - abiotic stress trait, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000153 - relative yield, TO:0000011 - nitrogen sensitivity	PO:0007520 - root development stage , PO:0009006 - shoot system , PO:0009005 - root 
11539	PUPK20-2	OsPupK20-2, PupK20-2, DIR55, OsDIR55, OsjDIR55	_	Dirigent 55, DIR domain protein 55			12	AB458444. BAK26565. A major quantitative trait locus for phosphorus-deficiency tolerance, Pup1, was identified in the traditional aus-type rice variety Kasalath. The Pup1 dirigent gene OsPupK20-2 is downstream of PSTOL1.	 Tolerance and resistance - Stress tolerance	Os12g0449650	LOC_Os12g26380.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
11540	_	OsPupK05-1	_				12	BAH79994. AB458444.									
11541	_	OsPupK04-1	_				12	AB458444. BAH79993. a putative fatty acid oxygenase.							GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
11542	_	OsPupK29-1	_				12	AB458444. BAH80018.									
11543	_	OsPupK01	_				12	AB458444.									
11544	_	OsPupK53	_				12	AB458444.									
11545	_	OsPupK67	_				12	AB458444.									
11546	MAC1	OsMac1, Mac1	MAP-KINASE ACTIVATING PROTEIN 1	MAP-kinase activating protein 1	MAP-KINASE ACTIVATING PROTEIN 1		6			Os06g0726600	LOC_Os06g51100.1, LOC_Os06g51100.2				GO:0009626 - plant-type hypersensitive response, GO:0016021 - integral to membrane, GO:0016301 - kinase activity		
11547	_	OsBI-1, OsBI1, BI1	_	Bax inhibitor-1			2	Q9MBD8.	 Tolerance and resistance - Stress tolerance	Os02g0125300	LOC_Os02g03280.2, LOC_Os02g03280.3				GO:0043066 - negative regulation of apoptosis, GO:0000038 - very-long-chain fatty acid metabolic process, GO:0005635 - nuclear envelope, GO:0005783 - endoplasmic reticulum, GO:0006915 - apoptosis, GO:0010446 - response to alkalinity, GO:0006983 - ER overload response, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000481 - alkali sensitivity	
11548	S44	S44(t)	HYBRID STERILITY 44	HYBRID STERILITY 44(t)			6	The sterility gene S44(t) was restricted to a 1.2 cM region flanked by RM5814 and RM20695 on the long arm of chromosome 6.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility					1.2			
11549	PP2C1	OsPP2C1, OsSIPP2C1, SIPP2C1, OsPP2C68, PP2C68, OsPP108	PROTEIN PHOSPHATASE 2C-1	protein phosphatase2C-1, protein phosphatase2C-l, salt-induced PP2C Protein 1, protein phosphatase 2C68, protein phosphatase 2C 68, protein phosphatase 108			9	Q0J2L7. OsPP2C68 in Xue et al. 2008, Xiong et al. 2014, Chen et al. 2014, Hong et al. 2016, Lin et al. 2017, Bhatnagar et al. 2020, Zhang et al. 2021, Long et al. 2023. OsPP2C1 in Li et al. 2013. OsPP108 in Zhang et al., 2017, Bai et al. 2021, Ge et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0325700	LOC_Os09g15670.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0046872 - metal ion binding, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0006470 - protein amino acid dephosphorylation, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0004722 - protein serine/threonine phosphatase activity, GO:0010119 - regulation of stomatal movement, GO:0009738 - abscisic acid mediated signaling	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
11550	BAG1	OsBAG1	BCL-2-ASSOCIATED ATHANOGENE 1	Bcl-2-associated athanogene 1	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 1		9		 Tolerance and resistance - Stress tolerance	Os09g0524800	LOC_Os09g35630.1				GO:0005739 - mitochondrion		
11551	BAG2	OsBAG2	BCL-2-ASSOCIATED ATHANOGENE 2	Bcl-2-associated athanogene 2	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 2		8		 Tolerance and resistance - Stress tolerance	Os08g0546100	LOC_Os08g43270.1				GO:0005739 - mitochondrion		
11552	BAG4	OsBAG4, EIP1, OsEIP1	BCL-2-ASSOCIATED ATHANOGENE 4	Bcl-2-associated athanogene 4, EBR1-interacting protein 1	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 4	osbag4, osbag4-1, osbag4-2, osbag4-3	1	KX196162. GO:0098542: defense response to other organism.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0831200	LOC_Os01g61500.1, LOC_Os01g61500.2				GO:0009409 - response to cold, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0051087 - chaperone binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0012501 - programmed cell death, GO:0005829 - cytosol, GO:0010228 - vegetative to reproductive phase transition, GO:0009651 - response to salt stress, GO:0006952 - defense response	TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000608 - sodium content, TO:0000609 - potassium content, TO:0006001 - salt tolerance, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance	
11553	BAG5	OsBAG5	BCL-2-ASSOCIATED ATHANOGENE 5	Bcl-2-associated athanogene 5	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 5		11		 Tolerance and resistance - Stress tolerance	Os11g0506800	LOC_Os11g31060.1						
11554	BAG6	OsBAG6	BCL-2-ASSOCIATED ATHANOGENE 6	Bcl-2-associated athanogene 6, B-cell lymphoma 2-associated athanogene 6	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 6	osbag6, osbag6-1, osbag6-2	2	GO:1901001: negative regulation of response to salt stress. GO:1900068: negative regulation of cellular response to alkaline pH. GO:0097009: energy homeostasis. PO:0030123: panicle inflorescence. TO:0006049: iron concentration. TO:0006053: zinc concentration. TO:0006048: manganese concentration.	 Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0719700	LOC_Os02g48780.1				GO:0009409 - response to cold, GO:0050848 - regulation of calcium-mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0010446 - response to alkalinity, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0006457 - protein folding, GO:0009506 - plasmodesma, GO:0051087 - chaperone binding	TO:0000397 - grain size, TO:0000396 - grain yield, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000590 - grain weight, TO:0000357 - growth and development trait, TO:0000303 - cold tolerance, TO:0000207 - plant height	PO:0020142 - stem internode , PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence 
11555	BAG3	OsBAG3	BCL-2-ASSOCIATED ATHANOGENE 3	Bcl-2-associated athanogene 3	BCL-2-ASSOCIATED ATHANOGENE PROTEIN 3		6		 Tolerance and resistance - Stress tolerance	Os06g0126500	LOC_Os06g03640.1				GO:0005739 - mitochondrion		
11556	_	OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT	_	O-Methyltransferase 26, caffeoyl-CoA O-methyltransferase, caffeoyl CoA O-methyltransferase 20, Caffeoyl coenzyme A 3-O-methyltransferase			8	AB110168. Q9XGP7. D15839. GO:1990169: stress response to copper ion. GO:1990170: stress response to cadmium ion. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0498100	LOC_Os08g38900.1, LOC_Os08g38900.2, LOC_Os08g38900.3				GO:0009807 - lignan biosynthetic process, GO:0009642 - response to light intensity, GO:0046872 - metal ion binding, GO:0008171 - O-methyltransferase activity, GO:0046688 - response to copper ion, GO:0005634 - nucleus, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046686 - response to cadmium ion	TO:0000733 - lignin biosynthesis trait, TO:0000432 - temperature response trait, TO:0000731 - lignin content, TO:0000460 - light intensity sensitivity, TO:0000021 - copper sensitivity	
11557	_	ROMT-17, ROMT17, CCoAOMT1	_	caffeoyl CoA O-methyltransferase 1, Caffeoyl-CoA O-methyltransferase 2			8	Q7F8T6. caffeoyl-CoA 3-OMT. Caffeoyl-CoA O-methyltransferase 2 in Sudo et al. 2008.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0498400	LOC_Os08g38910.4, LOC_Os08g38910.1, LOC_Os08g38910.2, LOC_Os08g38910.3				GO:0006952 - defense response, GO:0046872 - metal ion binding, GO:0009807 - lignan biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008171 - O-methyltransferase activity, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance, TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
11558	_	ROMT-27, ROMT27	_				8	caffeoyl-CoA 3-OMT.	 Biochemical character	Os08g0498600 	LOC_Os08g38920.1				GO:0008171 - O-methyltransferase activity		
11559	MRS2-1	OsMGT, OsMRS2-1	MRS2/MGT FAMILY MEMBER 1	Mg transporter, magnesium transporter, MRS2/MGT family member 1	MRS2/MGT FAMILY MEMBER 1		6	Q67UQ7.	 Biochemical character	Os06g0650800	LOC_Os06g44150.1				GO:0015095 - magnesium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005773 - vacuole		
11560	_	OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1	_	Mg2+/H+ exchanger, magnesium/hydrogen exchanger, Na+/Ca2+ Exchanger 14, Sodium/calcium exchanger 14			11	LOC_Os11g43860. Q2R041. OsMHX2 in Singh et al. 2013. OsMHX1 in Pittman and Hirschi 2016. Oryza barthii: ObarMHX1: OBART11G21860 (probably partial length sequence), Oryza brachyantha: ObraMHX1: OB11G26470, Oryza glaberrima: OglaMHX1: ORGLA11G0176700 (only partial length sequence available), Oryza glumipatula: OgluMHX1: OGLUM11G21190, Oryza longistaminata: OlMHX1: OLONG_007999, Oryza meridionalis: OmMHX1: OMERI11G18100, Oryza nivara: OnMHX1: ONIVA11G22170, Oryza punctata: OpMHX1: OPUNC11G18390, Oryza rufipogon: OrMHX1: ORUFI11G23770.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0660000	LOC_Os11g43860.1, LOC_Os11g43860.2				GO:0016021 - integral to membrane, GO:0006829 - zinc ion transport, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0015693 - magnesium ion transport, GO:0015491 - cation:cation antiporter activity, GO:0005774 - vacuolar membrane, GO:0006826 - iron ion transport	TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance	
11561	_	IBF1, OsFBX310, FBX310, OsFBX310, FBX310	_	inhibitor for brown furrows1, F-box protein 310, F-box-type E3 ubiquitin ligase X310		ibf1, ibf1-1, ibf1-2	9	LOC_Os09g12150.a kelch repeat-containing F-box protein.	 Coloration - Others	Os09g0292900	LOC_Os09g12150.1						
11562	SUB20	OsSP1, SP1, OsSub20	SUBTILISIN 20	Serine protease 1, Subtilisin 20	SUBTILISIN 20		2	AB037371. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0665300	LOC_Os02g44590.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0043086 - negative regulation of catalytic activity, GO:0005618 - cell wall		
11563	_	OsAP1	_	Aspartic acid protease 1, aspartic proteinase			5	D12777. P42211. C26503, AU091279.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0137400	LOC_Os05g04630.1, LOC_Os05g04630.2, LOC_Os05g04630.3, LOC_Os05g04630.4, LOC_Os05g04630.5, LOC_Os05g04630.6				GO:0004190 - aspartic-type endopeptidase activity, GO:0006629 - lipid metabolic process, GO:0006508 - proteolysis, GO:0005773 - vacuole	TO:0000432 - temperature response trait	
11564	_	Oryzasin	_	Oryzasin, Oryzasin 1			5	D32144, D32165. AF285164. Q42456. Aspartic acid protease. aspartic protease.	 Biochemical character	Os05g0567100	LOC_Os05g49200.1, LOC_Os05g49200.2				GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity, GO:0005773 - vacuole, GO:0006629 - lipid metabolic process		
11565	_	OsCP1, CP1	_	Cysteine protease 1			11	X80876. a target of miR168b.	 Reproductive organ,  Biochemical character	Os11g0255300	LOC_Os11g14900.1, LOC_Os11g14900.2, LOC_Os11g14900.3, LOC_Os11g14900.4, LOC_Os11g14900.5				GO:0009555 - pollen development, GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		PO:0001007 - pollen development stage 
11566	_	OsCatB	_	cysteine protease OsCatB			5	AY916493.	 Biochemical character	Os05g0310500	LOC_Os05g24550.1, LOC_Os05g24550.2, LOC_Os05g24550.3, LOC_Os05g24550.4, LOC_Os05g24550.5, LOC_Os05g24550.6				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis, GO:0005773 - vacuole		
11567	_	OsSTE1, OsDWF7	_	Sterol methyltransferase 1, Dwarf 7			1		 Biochemical character,  Vegetative organ - Culm	Os01g0134500	LOC_Os01g04260.1				GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0016126 - sterol biosynthetic process, GO:0000248 - C-5 sterol desaturase activity		
11568	_	OsABP, OsRH31	_	ATP-binding protein, DEAD-box helicase ATP-binding protein, OsABP helicase, DEAD-box ATP-dependent RNA helicase 31, RNA helicase 31			6	Q0DBU5. LOC_Os06g33520. DEAD-box RNA helicase protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0526600	LOC_Os06g33520.1				GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding		
11569	_	OsFBX234, OsFbox369, Os_F0191, OsFBX234, FBX234	_	F-box domain containing protein 234, F-box protein 369, F-box-type E3 ubiquitin ligase X234			7	LOC_Os07g23900. OsFBX234 in Macovei et al. 2012.		Os07g0421000 	LOC_Os07g23900.1						
11570	_		_	RPA1 subunit of RNA polymerase I, RNA polymerase I  RPA1 subunit			6		 Biochemical character	Os06g0612200	LOC_Os06g40950.1				GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0008270 - zinc ion binding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		
11572	_	OsRH26	_	DEAD-box ATP-dependent RNA helicase 26, RNA helicase 26			1	Q0JL73. LOC_Os01g43130. DEAD-box RNA helicase protein.	 Biochemical character	Os01g0618500	LOC_Os01g43130.1				GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0009651 - response to salt stress		
11573	_	OsRH25, RH25	_	DEAD-box ATP-dependent RNA helicase 25, RNA helicase 25			1	Q5ZBH5. LOC_Os01g43120. DEAD-box RNA helicase protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0618400	LOC_Os01g43120.1				GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0009409 - response to cold, GO:0003723 - RNA binding	TO:0000303 - cold tolerance	
11574	IMPBETA1	OsImpbeta1, OsImp beta 1	IMPORTIN BETA 1	beta subunit of importin, importin beta, importin beta 1, importin beta1	IMPORTIN BETA 1	osimpbeta1, osimpbeta1-1, osimpbeta1-2	5		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os05g0353400	LOC_Os05g28510.1, LOC_Os05g28510.2, LOC_Os05g28510.3, LOC_Os05g28510.4				GO:0005643 - nuclear pore, GO:0008565 - protein transporter activity, GO:0006886 - intracellular protein transport, GO:0006913 - nucleocytoplasmic transport		
11575	_		_	chloroplast precursor of 50S ribosomal protein L21, chloroplast 50S ribosomal protein L21			5		 Biochemical character	Os05g0557800	LOC_Os05g48410.1				GO:0009553 - embryo sac development, GO:0009567 - double fertilization forming a zygote and endosperm, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0005840 - ribosome, GO:0005739 - mitochondrion, GO:0006412 - translation, GO:0009555 - pollen development, GO:0000741 - karyogamy		
11576	_	OscTPI	_	triose phosphate isomerase, stress and methylglyoxal inducible triose phosphate isomerase			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0841600 	LOC_Os01g62420.1, LOC_Os01g62420.2, LOC_Os01g62420.3, LOC_Os01g62420.4				GO:0046686 - response to cadmium ion, GO:0005618 - cell wall, GO:0004807 - triose-phosphate isomerase activity, GO:0005507 - copper ion binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0010043 - response to zinc ion, GO:0009570 - chloroplast stroma, GO:0048046 - apoplast, GO:0044262 - cellular carbohydrate metabolic process, GO:0006096 - glycolysis, GO:0009651 - response to salt stress		
11577	_	OsSRP-LRS, OsSPN, OrysaZxa	_	OsSerpin, Serpin-ZXA			3	serpin family protein. Q75H81.	 Biochemical character	Os03g0610650	LOC_Os03g41419.1				GO:0030162 - regulation of proteolysis, GO:0004867 - serine-type endopeptidase inhibitor activity		
11578	_	OsSRP-PLP, OrysaZ9	_	non-inhibitory serpin-Z9			11	serpin family protein. Q2R8P2. CI370534, CI410938.	 Biochemical character	Os11g0222200	LOC_Os11g11500.1				GO:0030162 - regulation of proteolysis, GO:0004867 - serine-type endopeptidase inhibitor activity		
11579	_	OsSRP-QKG, OrysaZ12	_	serpin-Z12			1	serpin family protein. Q5NBM0.	 Biochemical character	Os01g0267300	LOC_Os01g16200.1				GO:0030162 - regulation of proteolysis, GO:0004867 - serine-type endopeptidase inhibitor activity		
11580	_	OsSRP-LGC, OrysaZ1	_	Serpin-Z1			1	serpin family protein. Q94DW6.	 Biochemical character	Os01g0765400	LOC_Os01g56010.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0030162 - regulation of proteolysis		
11581	_	OsSRP-FRS, OrysaZxb	_	Serpin-ZXB			3	serpin family protein. Q10GX0.	 Biochemical character	Os03g0610800	LOC_Os03g41438.1				GO:0030162 - regulation of proteolysis, GO:0004867 - serine-type endopeptidase inhibitor activity		
11582	_	OsSRP-PTY, OrysaZ10	_	non-inhibitory serpin-10			4	serpin family protein. Q7XMK1, Q7XMK0.	 Biochemical character	Os04g0533700	LOC_Os04g45110.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11583	_	OsSRP-FAS, OrysaZ6c	_	serpin-Z6C			11	serpin family protein. Q53MD1.	 Biochemical character	Os11g0231200	LOC_Os11g12460.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11584	_	OsSRP-FLC, OrysaZ2b	_	Serpin-Z2B			11	serpin family protein. Q53KS9.	 Biochemical character	Os11g0239200	LOC_Os11g13540.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11585	_	OsSRP-PGY, OrysaZ11	_	non-inhibitory serpin-Z11			4	serpin family protein. Q7XMK0. LOC_Os04g45120.	 Biochemical character	Os04g0533800	LOC_Os04g45120.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11586	_	OsSRP-GMS, OrysaZ5	_	serpin-Z5			11	serpin family protein. Q53MD3.	 Biochemical character	Os11g0232000	LOC_Os11g12520.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11587	_	OsSRP-LLS, OrysaZ2a	_	Serpin-Z2A			11	serpin family protein. Q53KS8.	 Biochemical character	Os11g0239000	LOC_Os11g13530.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11588	_	OsSRP-GAA, OrysaZ6a	_	serpin-Z6A			11	serpin family protein. Q53Q31.	 Biochemical character	Os11g0230400	LOC_Os11g12410.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11589	_	OsSRP-GRA, OrysaZ6b	_	Serpin-Z6B			11	serpin family protein. Q53Q32.	 Biochemical character	Os11g0230700	LOC_Os11g12420.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11590	_	OsSRP-PSG, OrysaZ8	_	serpin-Z8			11	serpin family protein. Q53P09.	 Biochemical character	Os11g0224800	LOC_Os11g11760.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
11592	SPIN1	Spin1, OsSPIN1, OsKH16, KH16	SPL11-INTERACTING PROTEIN 1	SPL11-interacting protein1, K-homologous family protein 16	SPL11-INTERACTING PROTEIN 1		3	Q75GR5. a member of the STAR (for signal transduction and activation of RNA) family. K homology domain-containing RNA-binding protein.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os03g0815700	LOC_Os03g60110.1				GO:0003677 - DNA binding, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0009908 - flower development, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0003723 - RNA binding	TO:0002616 - flowering time, TO:0006001 - salt tolerance	
11593	FLS2	Os-FLS2, OsFLS2, OsCLV2f, CLV2f	FLAGELLIN SENSITIVE 2	flagellin sensitive2, CLAVATA 2f		osfls2, osclv2f	4	leucine-rich repeat transmembrane receptor kinase. flg22 Receptor. rice FLS2 homolog.  a rice ortholog of Arabidopsis FLS2.	 Biochemical character,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance	Os04g0618700	LOC_Os04g52780.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016020 - membrane, GO:0002237 - response to molecule of bacterial origin, GO:0032490 - detection of molecule of bacterial origin, GO:0002221 - pattern recognition receptor signaling pathway	TO:0000734 - grain length, TO:0002730 - grain shape, TO:0000397 - grain size, TO:0000315 - bacterial disease resistance	
11594	PIL13	OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7, OsPIF4, PIF4, OsPIF1	_	phytochrome-interacting factor-like protein 1, PIF-like gene 1, PHYTOCHROME INTERACTING FACTOR-LIKE 13, basic helix-loop-helix protein 152, Phytochrome-interacting factor 7			3	OsPIL1 in Todaka et al. 2012, Seo et al. 2020, Li et al. 2021. OsPIF4 in Hu et al. 2020. OsPIF1 in Desai et al. 2021.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os03g0782500	LOC_Os03g56950.1, LOC_Os03g56950.2, LOC_Os03g56950.3, LOC_Os03g56950.4, LOC_Os03g56950.7, LOC_Os03g56950.6, LOC_Os03g56950.5				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009628 - response to abiotic stimulus, GO:0007623 - circadian rhythm, GO:0010378 - temperature compensation of the circadian clock, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000168 - abiotic stress trait, TO:0000164 - stress trait, TO:0000276 - drought tolerance, TO:0002616 - flowering time, TO:0000145 - internode length	
11596	XAX1	OsXAX1, OsGT61-1, GT61-1	XYLOSYL ARABINOSYL SUBSTITUTION OF XYLAN 1	xylosyl arabinosyl substitution of xylan 1, Glycosyltransferase 61-1		xax1	2	Q6Z7I3.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0329800	LOC_Os02g22380.1				GO:0009664 - plant-type cell wall organization, GO:0045492 - xylan biosynthetic process, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane, GO:0035252 - UDP-xylosyltransferase activity	TO:0002649 - pesticide sensitivity	
11597	_	OsDSHCT	_	DOB1/SK12/helY-like DEAD-box Helicase			11		 Tolerance and resistance - Stress tolerance	Os11g0176200	LOC_Os11g07500.1, LOC_Os11g07500.2				GO:0010093 - specification of floral organ identity, GO:0003676 - nucleic acid binding, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding		
11598	_	OsDBH	_	DEAD-Box Helicase			4		 Tolerance and resistance - Stress tolerance	Os04g0486800	LOC_Os04g40970.1				GO:0003676 - nucleic acid binding, GO:0005524 - ATP binding, GO:0006310 - DNA recombination, GO:0008026 - ATP-dependent helicase activity		
11599	MIR414	miR414, osa-MIR414	MICRORNA414	MICRORNA414	_		11	miRBASE accession: MI0001434. Target: Os06g0561200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
11600	MIR408	miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408	MICRORNA408	MICRORNA408	_		1	miRBASE accession: MI0001149. Target gene: Os03g0259100. LM379354 LM383078. TO:0000975: grain width. TO:0000817: inflorescence bract length. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Embryo,  Other,  Seed - Morphological traits - Grain shape	Os01g0322700					GO:0009414 - response to water deprivation, GO:0006379 - mRNA cleavage, GO:0048316 - seed development, GO:0009793 - embryonic development ending in seed dormancy, GO:0009409 - response to cold, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion	TO:0000592 - 1000-dehulled grain weight, TO:0000734 - grain length, TO:0000653 - seed development trait, TO:0000206 - leaf angle, TO:0000620 - embryo development trait, TO:0000397 - grain size, TO:0000429 - salt sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0020032 - plumule , PO:0007631 - plant embryo stage , PO:0001170 - seed development stage , PO:0009009 - plant embryo , PO:0020031 - radicle 
11601	MIR164E	miR164e, osa-MIR164e	MICRORNA164E	MICRORNA164e, osa-miRNA164e	_		3	miRBASE accession: MI0001105. AY551228. HM139293-HM139330 (O. sativa, O. rufipogon).LM379318	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
11602	_	DDX46	_	ATP-dependent RNA helicase DDX46	_		8	Q0J7Y8.	 Biochemical character						GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity		
11603	TOGR1	OsTOGR1, DDX47, OsDDX47, OsRH10, RH10	THERMOTOLERANT GROWTH REQUIRED1	ATP-dependent RNA helicase DDX47, RNA helicase 10, thermotolerant growth required1	_	togr1, togr1-1, togr1-2, togr1-3, togr1-4	3	Q7Y183. LOC_Os03g46610. DEAD-box RNA helicase protein. togr1-1 is a spontaneous recessive thermosensitive dwarf mutant isolated from an indica variety, Zhongxian 3037 (Wang et al. 2016).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character	Os03g0669000	LOC_Os03g46610.1, LOC_Os03g46610.2				GO:0009408 - response to heat, GO:0005730 - nucleolus, GO:0034337 - RNA folding, GO:0007623 - circadian rhythm, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0006364 - rRNA processing	TO:0000259 - heat tolerance, TO:0000207 - plant height	
11604	PRP5	OsPRP5, OsRH42, RH42	_	Pre-mRNA-processing ATP-dependent RNA helicase PRP5, RNA helicase 42	_		8	Q84UQ1. DEAD-box RNA helicase protein. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0159900	LOC_Os08g06344.1, LOC_Os08g06344.2, LOC_Os08g06344.3				GO:0005524 - ATP binding, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0030620 - U2 snRNA binding	TO:0000259 - heat tolerance, TO:0000346 - tiller number, TO:0002759 - grain number, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000181 - seed weight, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root , PO:0020040 - leaf base , PO:0009049 - inflorescence , PO:0020103 - flag leaf , PO:0020137 - leaf apex , PO:0020139 - leaf midvein 
11605	_	RNAhA	_	RNA helicase A	_		1		 Biochemical character	Os01g0767700	LOC_Os01g56190.1				GO:0003676 - nucleic acid binding, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity		
11606	CTD2	OsCTD2, CHR740, OsCHR740, OsCLSY3, CLSY3, OsFEL1, FEL1	ATP-DEPENDENT HELICASE CTD2	ATP-dependent helicase CTD2, chromatin remodeling factor 740, CLASSY 3, CLASSY-family chromatin remodeler 3, FEM2-Like 1	ATP-DEPENDENT HELICASE CTD2		2	NCBI Gene Expression Omnibus: accession number GSE229961. GO:0140658: ATP-dependent chromatin remodeler activity. GO:0080188: gene silencing by RNA-directed DNA methylation. TO:0000975: grain width. TO:0000847: panicle inflorescence morphology trait.	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Character as QTL - Grain quality	Os02g0650800	LOC_Os02g43460.1				GO:0010342 - cellularization of endosperm, GO:0010029 - regulation of seed germination, GO:0009414 - response to water deprivation, GO:0043565 - sequence-specific DNA binding, GO:0045814 - negative regulation of gene expression, epigenetic, GO:0005634 - nucleus, GO:0009960 - endosperm development, GO:0005524 - ATP binding, GO:0003006 - reproductive developmental process, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0009555 - pollen development	TO:0000146 - seed length, TO:0000266 - chalky endosperm, TO:0000227 - root length, TO:0000402 - grain width, TO:0000734 - grain length, TO:0000181 - seed weight, TO:0000487 - endosperm color, TO:0000149 - seed width, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000100 - shrunken endosperm, TO:0000245 - pollen free, TO:0000653 - seed development trait, TO:0000391 - seed size, TO:0000053 - pollen sterility	PO:0001170 - seed development stage , PO:0001004 - anther development stage , PO:0025281 - pollen , PO:0020003 - plant ovule , PO:0009089 - endosperm , PO:0007633 - endosperm development stage , PO:0001007 - pollen development stage 
11607	KU70	OsKu70, Ku70	_	rice homolog of Ku70, Ku70 homolog		osku70, osku70-1, osku70-2, ku70	7	Q7F1M0.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0184900	LOC_Os07g08729.1				GO:0005524 - ATP binding, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0006310 - DNA recombination, GO:0009408 - response to heat, GO:0042162 - telomeric DNA binding, GO:0032502 - developmental process, GO:0006281 - DNA repair, GO:0004003 - ATP-dependent DNA helicase activity, GO:0003690 - double-stranded DNA binding, GO:0003684 - damaged DNA binding, GO:0000723 - telomere maintenance, GO:0043564 - Ku70:Ku80 complex	TO:0000357 - growth and development trait, TO:0000485 - sterility related trait, TO:0000168 - abiotic stress trait	
11608	KU80	OsKu80, Ku80	KU80 HOMOLOG	rice homolog of Ku80	KU80 HOMOLOG		3	Q75IP6.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0856200	LOC_Os03g63920.1, LOC_Os03g63910.1				GO:0006974 - response to DNA damage stimulus, GO:0006310 - DNA recombination, GO:0000723 - telomere maintenance, GO:0003684 - damaged DNA binding, GO:0003690 - double-stranded DNA binding, GO:0042162 - telomeric DNA binding, GO:0004003 - ATP-dependent DNA helicase activity, GO:0005524 - ATP binding, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0043564 - Ku70:Ku80 complex, GO:0009408 - response to heat		
11609	LIG4	OsLig4, Lig4	DNA LIGASE 4	DNA ligase 4, rice homolog of Lig4	DNA LIGASE 4		4	Q7X7E9.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0606450	LOC_Os04g51700.1				GO:0006310 - DNA recombination, GO:0006974 - response to DNA damage stimulus, GO:0005634 - nucleus, GO:0003910 - DNA ligase (ATP) activity, GO:0003677 - DNA binding, GO:0006260 - DNA replication, GO:0051103 - DNA ligation during DNA repair, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
11610	BRCA1	OsBRCA1, OsRING285, RING285	BREAST CANCER 1	RING-type E3 ubiquitin ligase 285			5	homologous recombination (HR)-related gene. RING Finger Protein (OsRFP).		Os05g0512000 	LOC_Os05g43610.1				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0006281 - DNA repair		
11611	BRCA2	OsBRCA2	BREAST CANCER 2 	BRCA2 orthologue		osbrca2, osbrca2-1, osbrca2-2, osbrca2-3, osbrca2-4	1	homologous recombination (HR)-related gene. the rice orthologue of human BRCA2. GO:0035825: homologous recombination.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0164800 	LOC_Os01g07110.1				GO:0006310 - DNA recombination, GO:0000237 - leptotene, GO:0000238 - zygotene, GO:0007130 - synaptonemal complex assembly, GO:0007129 - synapsis, GO:0051321 - meiotic cell cycle, GO:0006302 - double-strand break repair	TO:0000437 - male sterility, TO:0000729 - meiotic cell cycle trait, TO:0000358 - female sterility	PO:0009066 - anther , PO:0009039 - glume , PO:0009005 - root , PO:0025034 - leaf , PO:0009006 - shoot system 
11612	MRE11	OsMRE11, Mre11	MEIOTIC RECOMBINATION 11	Meiotic recombination 11		mre11, mre11-cr	4	homologous recombination (HR)-related gene. a homolog of Arabidopsis AtMRE11. GO:0090305:nucleic acid phosphodiester bond hydrolysis. AY935255. GO:0072710: response to hydroxyurea. GO:0072702: response to methyl methanesulfonate. GO:1902969: mitotic DNA replication. GO:0097752: regulation of DNA stability.	 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0635900	LOC_Os04g54340.1				GO:0006260 - DNA replication, GO:0000278 - mitotic cell cycle, GO:0004519 - endonuclease activity, GO:0007292 - female gamete generation, GO:0006281 - DNA repair, GO:0051301 - cell division, GO:0004527 - exonuclease activity, GO:0030145 - manganese ion binding, GO:0048232 - male gamete generation, GO:0000724 - double-strand break repair via homologous recombination, GO:0007126 - meiosis, GO:0006302 - double-strand break repair, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051320 - S phase, GO:0006303 - double-strand break repair via nonhomologous end joining	TO:0000420 - fertility related trait, TO:0000639 - seed fertility, TO:0000357 - growth and development trait, TO:0000207 - plant height	PO:0009029 - stamen , PO:0005052 - plant callus , PO:0009010 - seed , PO:0009047 - stem , PO:0009030 - carpel , PO:0020148 - shoot apical meristem , PO:0000025 - root tip , PO:0009005 - root , PO:0025034 - leaf 
11613	_	OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4	_				1	homologous recombination (HR)-related gene. a rice homolog of the yeast MUS81 endonuclease gene. GO:0090305:nucleic acid phosphodiester bond hydrolysis. Q8GT06. KC609158-KC609170 (O. sativa and wild rice species, partial cds).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0948100 	LOC_Os01g71960.1				GO:0004519 - endonuclease activity, GO:0051301 - cell division, GO:0051026 - chiasma formation, GO:0000724 - double-strand break repair via homologous recombination, GO:0000794 - condensed nuclear chromosome, GO:0003677 - DNA binding, GO:0006312 - mitotic recombination, GO:0007067 - mitosis, GO:0046872 - metal ion binding		
11614	RAD50	Rad50, OsRad50	_				2	homologous recombination (HR)-related gene. GO:0090305:nucleic acid phosphodiester bond hydrolysis.	 Biochemical character	Os02g0497500 	LOC_Os02g29464.1				GO:0016233 - telomere capping, GO:0030870 - Mre11 complex, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0000724 - double-strand break repair via homologous recombination, GO:0008270 - zinc ion binding, GO:0004518 - nuclease activity, GO:0006312 - mitotic recombination, GO:0006302 - double-strand break repair		
11616	RAD51C	OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3	DNA REPAIR PROTEIN RAD51C	DNA repair protein RAD51C, Radiation sensitive51C, Radiation sensitive 51C	DNA REPAIR PROTEIN RAD51C	Osrad51c, rad51c	1	homologous recombination (HR)-related gene. JN394076. GO:1904975: response to bleomycin.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0578000  	LOC_Os01g39630.2, LOC_Os01g39630.1				GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0007143 - female meiosis, GO:0045002 - double-strand break repair via single-strand annealing, GO:0010332 - response to gamma radiation, GO:0007131 - reciprocal meiotic recombination, GO:0006302 - double-strand break repair, GO:0003677 - DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0005524 - ATP binding, GO:0005694 - chromosome, GO:0007140 - male meiosis, GO:0016444 - somatic cell DNA recombination, GO:0000706 - meiotic DNA double-strand break processing, GO:0008094 - DNA-dependent ATPase activity	TO:0000161 - radiation response trait	
11617	RAD51D	OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3	DNA REPAIR PROTEIN RAD51D	DNA repair protein RAD51D	DNA REPAIR PROTEIN RAD51D	osrad51d, rad51d, Osrad51d, Osrad51d-1, Osrad51d-2	9	homologous recombination (HR)-related gene. KJ472480, KJ472481, KJ472482. TO:0000862: floral organ anatomy and morphology trait. GO:1904975: response to bleomycin. GO:0035825: homologous recombination.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os09g0104200 	LOC_Os09g01680.1, LOC_Os09g01680.2, LOC_Os09g01680.3				GO:0007130 - synaptonemal complex assembly, GO:0022414 - reproductive process, GO:0010332 - response to gamma radiation, GO:0045002 - double-strand break repair via single-strand annealing, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0006302 - double-strand break repair, GO:0000723 - telomere maintenance, GO:0007126 - meiosis, GO:0007129 - synapsis	TO:0000161 - radiation response trait, TO:0000225 - stamen number, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000485 - sterility related trait	
11618	RAD54	OsRAD54, OsRad54, CHR733, OsCHR733	DNA REPAIR PROTEIN RAD54	DNA repair protein RAD54, chromatin remodeling factor 733	DNA REPAIR PROTEIN RAD54		2	homologous recombination (HR)-related gene. A4PBL4. AB240577. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0762800 	LOC_Os02g52510.1				GO:0009651 - response to salt stress, GO:0015616 - DNA translocase activity, GO:0016787 - hydrolase activity, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003677 - DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0051301 - cell division, GO:0010332 - response to gamma radiation, GO:0005634 - nucleus, GO:0007067 - mitosis, GO:0007131 - reciprocal meiotic recombination, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11619	_	OsRecQl4, RecQl4, OsMed34_1, Med34_1	_	RecQ like protein 4, Mediator 34_1		osrecql4, osrecql4-1, osrecql4-2	4	homologous recombination (HR)-related gene. CAE03209. LOC_Os04g35420.	 Biochemical character	Os04g0433800 	LOC_Os04g35420.1				GO:0006281 - DNA repair, GO:0043140 - ATP-dependent 3'-5' DNA helicase activity, GO:0006260 - DNA replication		
11620	_	DSS1/SEM1, DSS1, SEM1	_				1	homologous recombination (HR)-related gene.	 Biochemical character	Os01g0273000 	LOC_Os01g16640.1						
11621	_	XRCC3, OsXRCC3	_			xrcc3	2	homologous recombination (HR)-related gene. GO:1904975: response to bleomycin 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0562100 	LOC_Os02g35450.1				GO:0006302 - double-strand break repair, GO:0008094 - DNA-dependent ATPase activity, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0003684 - damaged DNA binding, GO:0005524 - ATP binding, GO:0006281 - DNA repair		
11622	LC1	OsGH3-1, GH3-1, OsGH3.1, GH3.1, OsLC1	LEAF INCLINATION 1	LEAF INCLINATION1		lc1-D	1	Q8LQM5. an IAA-amido synthetase. the counterpart of the Arabidopsis DFL1. the candidate gene for qPP1 (protrusion percentage-associated QTL on chromosome 1). TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Leaf,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0785400	LOC_Os01g57610.1				GO:0009734 - auxin mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0010252 - auxin homeostasis, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress, GO:0016132 - brassinosteroid biosynthetic process, GO:0016874 - ligase activity	TO:0000163 - auxin sensitivity, TO:0002672 - auxin content, TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000430 - germination rate, TO:0000280 - seedling vigor, TO:0000019 - seedling height, TO:0000227 - root length, TO:0000206 - leaf angle	
11623	GH3-2	OsGH3-2, OsGH3.2, GH3.2	GRETCHENHAGEN 3-2	OsGRETCHENHAGEN3-2, GRETCHENHAGEN3-2, GRETCHEN HAGEN3-2		Osgh3.2, Osgh3.2-1, Osgh3.2-2	1	P0C0M2. GU001814. IAA-conjugating enzyme. TO:0000931: seed quality trait. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. TO:0001058: root system depth. GO:1901601: strigolactone biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits,  Vegetative organ - Root,  Character as QTL - Germination,  Seed - Morphological traits - Grain shape,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Seed - Physiological traits - Longevity,  Vegetative organ - Leaf	Os01g0764800	LOC_Os01g55940.1				GO:0005737 - cytoplasm, GO:0009733 - response to auxin stimulus, GO:0010252 - auxin homeostasis, GO:0009739 - response to gibberellin stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity, GO:0080006 - internode patterning, GO:0050832 - defense response to fungus, GO:0051607 - defense response to virus, GO:0016881 - acid-amino acid ligase activity, GO:0009416 - response to light stimulus, GO:0010229 - inflorescence development, GO:0048364 - root development, GO:0009683 - indoleacetic acid metabolic process, GO:0009651 - response to salt stress, GO:0009610 - response to symbiotic fungus, GO:0009409 - response to cold, GO:0010930 - negative regulation of auxin mediated signaling pathway	TO:0000145 - internode length, TO:0001013 - lateral root number, TO:0002674 - tryptophan content, TO:0000734 - grain length, TO:0000621 - inflorescence development trait, TO:0000656 - root development trait, TO:0000135 - leaf length, TO:0000040 - panicle length, TO:0000547 - primary branch number, TO:0002685 - crown root number, TO:0000557 - secondary branch number, TO:0000166 - gibberellic acid sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0006032 - panicle size, TO:0002667 - abscisic acid content, TO:0000303 - cold tolerance, TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0000163 - auxin sensitivity, TO:0000345 - seed viability, TO:0000435 - seed longevity, TO:0000544 - mesocotyl length, TO:0002672 - auxin content, TO:0000227 - root length	PO:0009010 - seed , PO:0007520 - root development stage , PO:0009005 - root , PO:0009049 - inflorescence , PO:0000258 - root cortex , PO:0001083 - inflorescence development stage , PO:0009066 - anther , PO:0020121 - lateral root 
11624	GH3-4	OsGH3-4, OsGH3.4, GH3.4	GH3-4				5	Q60EJ6.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0500900	LOC_Os05g42150.1				GO:0009415 - response to water, GO:0016874 - ligase activity, GO:0009733 - response to auxin stimulus, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress	TO:0000237 - water stress trait, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance	PO:0009010 - seed 
11625	GH3-6	OsGH3-6, OsGH3.6, GH3.6	GH3-6				5	Q60EY1. BGIOSGA018825. GO:1902347: response to strigolactone.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0143800	LOC_Os05g05180.2, LOC_Os05g05180.1				GO:0009733 - response to auxin stimulus, GO:0016874 - ligase activity, GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus	TO:0000401 - plant growth hormone sensitivity, TO:0006001 - salt tolerance	
11626	GH3-7	OsGH3-7	GH3-7				6	Q654M1. GO: 0052625:4-aminobenzoate amino acid synthetase activity. GO: 0052628:4-hydroxybenzoate amino acid synthetase activity. GO:0052626: benzoate amino acid synthetase activity. GO:0052627: vanillate amino acid synthetase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0499500	LOC_Os06g30440.2, LOC_Os06g30440.1				GO:0009733 - response to auxin stimulus, GO:0016046 - detection of fungus, GO:0009416 - response to light stimulus, GO:0018874 - benzoate metabolic process, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009651 - response to salt stress, GO:0009816 - defense response to bacterium, incompatible interaction	TO:0006001 - salt tolerance	
11627	GH3-9	OsGH3-9	GH3-9				7	Q6ZLA3.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0576500	LOC_Os07g38890.1				GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity, GO:0009733 - response to auxin stimulus	TO:0006001 - salt tolerance	
11628	GH3-10	OsGH3-10	GH3-10	indole-3-acetic acid-amido synthetase GH3.10			7	Q6ZLA7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0576100	LOC_Os07g38860.1				GO:0016874 - ligase activity, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity, GO:0046688 - response to copper ion, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity	
11629	GH3-11	OsGH3-11, OsGH3.11, GH3.11	GH3-11				7	P0C0M3.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0671500	LOC_Os07g47490.4, LOC_Os07g47490.3, LOC_Os07g47490.2, LOC_Os07g47490.1				GO:0009733 - response to auxin stimulus, GO:0009941 - chloroplast envelope, GO:0016874 - ligase activity, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
11630	TLD1	OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2	INCREASED NUMBER OF TILLERS, ENLARGED LEAF ANGLES AND DWARFISM 1	increased number of tillers, enlarged leaf angles, and dwarfism 1	INDOLE-3-ACETIC ACID (IAA)-AMIDO SYNTHETASE	tld1-D	11	Q2R3B4. The selective splicing of LOC_Os11g32520 and LOC_Os11g32510 produces two splice variants: TLD1 and TLD2.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os11g0528700	LOC_Os11g32520.1, LOC_Os11g32510.1				GO:0005737 - cytoplasm, GO:0009733 - response to auxin stimulus, GO:0010279 - indole-3-acetic acid amido synthetase activity, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus	TO:0006001 - salt tolerance, TO:0000346 - tiller number, TO:0000152 - panicle number	
11631	PHS3	OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO	PRE-HARVEST SPROUTING 3	carotenoid isomerase, Pre-harvest sprouting 3	PRE-HARVEST SPROUTING 3	mhz5, mhz5-1, mhz5-2, mhz5-3, mhz5-4, phs3, Osphs3-1	11	GO:2000280: regulation of root development.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0572700	LOC_Os11g36440.1				GO:0046608 - carotenoid isomerase activity, GO:0009507 - chloroplast, GO:0009723 - response to ethylene stimulus, GO:0060359 - response to ammonium ion, GO:0048364 - root development, GO:0016117 - carotenoid biosynthetic process, GO:0009693 - ethylene biosynthetic process, GO:0009873 - ethylene mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling	TO:0000173 - ethylene sensitivity, TO:0000656 - root development trait, TO:0000578 - root fresh weight, TO:0000516 - relative root length, TO:0002667 - abscisic acid content	PO:0007045 - coleoptile emergence stage , PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage 
11632	PSY3	OsPSY, PSY, OsPSY3	PHYTOENE SYNTHASE 3	phytoene synthase 3	PHYTOENE SYNTHASE 3		9	DQ356431. BAF25806. FJ214953.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Coloration - Others,  Biochemical character	Os09g0555500	LOC_Os09g38320.1				GO:0016117 - carotenoid biosynthetic process, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups, GO:0009507 - chloroplast, GO:0009688 - abscisic acid biosynthetic process	TO:0002667 - abscisic acid content	
11633	_	OsBBX1, OsDBB3c, BBX1, DBB3c	_	B-box-containing protein 1, DOUBLE B-BOX zinc finger gene 3c, DOUBLE B-BOX 3c			1	the counterpart of (A. thaliana) DBB3.	 Tolerance and resistance - Stress tolerance	Os01g0202500	LOC_Os01g10580.1				GO:0005622 - intracellular, GO:0046686 - response to cadmium ion, GO:0010045 - response to nickel ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance, TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0009010 - seed , PO:0020104 - leaf sheath , PO:0007616 - flowering stage , PO:0025034 - leaf 
11634	_	OsBBX2, BBX2	_	B-box-containing protein 2	_		2	AK241477.	 Tolerance and resistance - Stress tolerance	Os02g0176000	LOC_Os02g07930.1				GO:0009751 - response to salicylic acid stimulus, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009010 - seed , PO:0020104 - leaf sheath 
11635	BBX3	OsBBX3, OsF, OsCCT05, CCT05	B-BOX-CONTAINING PROTEIN 3	B-box-containing protein 3, CCT domain-containing gene 5, CCT (CO, CO-LIKE and TOC1) domain protein 5, CCT domain protein 5, CONSTANS-like gene F	B-BOX-CONTAINING PROTEIN 3		2			Os02g0178100	LOC_Os02g08150.1				GO:0007623 - circadian rhythm		PO:0009010 - seed , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
11636	RNG1	OsBBX4, BBX4, OsSTH, STH, OsRNG1	RESISTANCE NEGATIVELY RELATED GENE 1	B-box-containing protein 4, STO homologue, SALT TOLERANCE HOMOLOGUE, Resistance Negatively related Gene 1	RESISTANCE NEGATIVELY RELATED PROTEIN 1	rng1, rng1-4, rng1-7	2	CT830238, AB001885. orthologous to A. thaliana STH. Zinc-finger Protein. HQ858805. ORPHAN transcription factor in Yilmaz et al. 2009. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance	Os02g0606200	LOC_Os02g39360.1				GO:0031348 - negative regulation of defense response, GO:0008270 - zinc ion binding, GO:0042742 - defense response to bacterium, GO:0005622 - intracellular, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0009066 - anther , PO:0009010 - seed , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009049 - inflorescence 
11637	BBX6	OsBBX6	_	B-box-containing protein 6			2	CT832305. HQ858819. ORPHANS transcription factor in Yilmaz et al. 2009.	 Other,  Tolerance and resistance - Stress tolerance	Os02g0646200	LOC_Os02g43170.2, LOC_Os02g43170.1				GO:0030912 - response to deep water, GO:0005622 - intracellular, GO:0008270 - zinc ion binding	TO:0000524 - submergence tolerance	PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009006 - shoot system 
11639	BBX8	OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, CCT09, Ghd2	B-BOX-CONTAINING PROTEIN 8	"B-box-containing protein 8, CCT domain-containing gene 9, CCT (CO, CO-LIKE and TOC1) domain protein 9, CCT domain protein 9, \"Grain number, plant height, and heading date2\", CONSTANS-like 1 protein"	B-BOX-CONTAINING PROTEIN 8	ghd2, Ghd2-CR	2	a CONSTANS-like gene. GO:1900055: regulation of leaf senescence. GO:2000028: regulation of photoperiodism, flowering. GO:0080148: negative regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Vegetative organ - Leaf	Os02g0731700	LOC_Os02g49880.1				GO:0046686 - response to cadmium ion, GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010039 - response to iron ion, GO:0010045 - response to nickel ion	TO:0000224 - iron sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0000249 - leaf senescence, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0002616 - flowering time	PO:0020104 - leaf sheath , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0007616 - flowering stage 
11641	BBX10	OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, CCT14, COL9	B-BOX-CONTAINING PROTEIN 10	B-box-containing protein 10, CCT domain-containing gene 14, CCT (CO, CO-LIKE and TOC1) domain protein 14, CCT domain protein 14, CONSTANS-Like 10, CONSTANS-like 9, OsCO  like6	B-BOX-CONTAINING PROTEIN 10		3	OsCOL9 in Liu et al. 2016. OsCO  like6 in Li et al. 2023.	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os03g0711100	LOC_Os03g50310.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0005622 - intracellular, GO:0009751 - response to salicylic acid stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0009863 - salicylic acid mediated signaling pathway, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0007623 - circadian rhythm	TO:0000447 - filled grain number, TO:0000074 - blast disease, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000173 - ethylene sensitivity	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0007616 - flowering stage , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009010 - seed , PO:0004006 - mesophyll cell 
11642	STO	OsBBX11, OsSTO, BBX11, BBX24, OsBBX24	SALT TOLERANCE	B-box-containing protein 11	B-BOX-CONTAINING PROTEIN 11		4	AB001883. MH04t0504500. orthologous to A. thaliana STO. Zinc-finger Protein. BBX24 in Desai et al. 2021.	 Tolerance and resistance - Stress tolerance	Os04g0493000	LOC_Os04g41560.4, LOC_Os04g41560.2				GO:0010378 - temperature compensation of the circadian clock, GO:0005622 - intracellular, GO:0009266 - response to temperature stimulus, GO:0007623 - circadian rhythm, GO:0008270 - zinc ion binding	TO:0000432 - temperature response trait	PO:0009010 - seed , PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009006 - shoot system 
11643	BBX12	OsBBX12, OsC, OsCCT16, CCT16	B-BOX-CONTAINING PROTEIN 12	B-box-containing protein 12, CCT domain-containing gene 16, CCT (CO, CO-LIKE and TOC1) domain protein 16, CCT domain protein 16, CONSTANS-like protein, CONSTANS-like gene C, OsCO  like3	B-BOX-CONTAINING PROTEIN 12		4	AL606627. OsCO  like3 in Li et al. 2023.	 Tolerance and resistance - Stress tolerance	Os04g0497700	LOC_Os04g42020.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0009409 - response to cold, GO:0007623 - circadian rhythm, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0010039 - response to iron ion, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009066 - anther , PO:0009010 - seed , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
11644	_	OsBBX13, BBX13, OsRIP1, RIP1	_	B-box-containing protein 13, OsRE1-INTERACTING PROTEIN 1, RE1-INTERACTING PROTEIN 1		Osrip1	4	CT830169. HQ858844. AP2-EREBP transcription factor. GO:2000028: regulation of photoperiodism, flowering.	 Vegetative organ - Culm,  Other,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Reproductive organ - Heading date	Os04g0540200	LOC_Os04g45690.1				GO:0048573 - photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0005622 - intracellular, GO:0007623 - circadian rhythm	TO:0000137 - days to heading, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0002616 - flowering time	PO:0009006 - shoot system , PO:0007616 - flowering stage , PO:0025034 - leaf 
11645	_	OsBBX14, BBX14, OsDBB3b, DBB3b	_	B-box-containing protein 14, DOUBLE B-BOX zinc finger gene 3b, DOUBLE B-BOX 3b, B-box protein 14			5	a homolog of Arabidopsis thaliana B-box domain protein 22 (AtBBX22).	 Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Seed - Morphological traits	Os05g0204600	LOC_Os05g11510.1				GO:0010039 - response to iron ion, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0010045 - response to nickel ion, GO:0007623 - circadian rhythm, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0005622 - intracellular, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0031542 - positive regulation of anthocyanin biosynthetic process	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000224 - iron sensitivity, TO:0000137 - days to heading, TO:0000172 - jasmonic acid sensitivity, TO:0000071 - anthocyanin content, TO:0000486 - seed color, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0020141 - stem node , PO:0007632 - seed maturation stage , PO:0009010 - seed , PO:0020103 - flag leaf , PO:0025034 - leaf 
11646	BBX15	OsBBX15, OsCCT19, OsS, OsSTA162, CCT19, STA162	B-BOX-CONTAINING PROTEIN 15	B-box-containing protein 15, CCT domain-containing gene 19, CCT (CO, CO-LIKE and TOC1) domain protein 19, CCT domain protein 19	B-BOX-CONTAINING PROTEIN 15		6	a mature anther-preferentially expressed gene.	 Reproductive organ - Heading date,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0103000	LOC_Os06g01340.1				GO:0048573 - photoperiodism, flowering, GO:0007623 - circadian rhythm	TO:0000137 - days to heading	PO:0025034 - leaf , PO:0009066 - anther , PO:0007616 - flowering stage 
11647	_	OsBBX16, OsDBB3a, BBX16, DBB3a	_	B-box-containing protein 16, DOUBLE B-BOX zinc finger gene 3a, DOUBLE B-BOX 3a			6	AB001886. Zinc-finger Protein.	 Tolerance and resistance - Stress tolerance	Os06g0152200	LOC_Os06g05890.1				GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0005622 - intracellular, GO:0010039 - response to iron ion, GO:0008270 - zinc ion binding, GO:0010045 - response to nickel ion	TO:0000224 - iron sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0020141 - stem node , PO:0009006 - shoot system , PO:0009089 - endosperm , PO:0007616 - flowering stage , PO:0009010 - seed 
11648	BBX17	OsBBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16	B-BOX-CONTAINING PROTEIN 17	B-box-containing protein 17, CCT domain-containing gene 20, CCT (CO, CO-LIKE and TOC1) domain protein 20, CCT domain protein 20, CONSTANS-like protein 16	B-BOX-CONTAINING PROTEIN 17	oscol16	6	an Arabidopsis COL16 homolog. GO:2000028: regulation of photoperiodism, flowering. GO:0099402: plant organ development.	 Reproductive organ - Heading date,  Character as QTL - Germination,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os06g0264200	LOC_Os06g15330.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009413 - response to flooding, GO:0005622 - intracellular, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0009845 - seed germination, GO:0005634 - nucleus, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010039 - response to iron ion, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold, GO:0048577 - negative regulation of short-day photoperiodism, flowering	TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000524 - submergence tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
11649	DTH2	OsBBX19, BBX19, OsM, OsDTH2, qDTH-2, OsCCT22, CCT22	DAYS TO HEADING ON CHROMOSOME 2	B-box-containing protein 19, Days to heading on chromosome 2, CCT domain-containing gene 22, CCT (CO, CO-LIKE and TOC1) domain protein 22, CCT domain protein 22	B-BOX-CONTAINING PROTEIN 19	DTH2-a, DTH2-i, oscct22, oscct22-1, oscct22-2	6	CT833045. 	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0298200	LOC_Os06g19444.2, LOC_Os06g19444.1				GO:0005886 - plasma membrane, GO:0010045 - response to nickel ion, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0046686 - response to cadmium ion, GO:0008270 - zinc ion binding, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress	TO:0002616 - flowering time, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0000224 - iron sensitivity, TO:0000456 - spikelet number, TO:0000303 - cold tolerance, TO:0000137 - days to heading	PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed 
11650	BBX20	OsBBX20, OsE, OsCCT23, CCT23	B-BOX-CONTAINING PROTEIN 20	B-box-containing protein 20, CCT domain-containing gene 23, CCT (CO, CO-LIKE and TOC1) domain protein 23, CCT domain protein 23, CONSTANS-like gene E	B-BOX-CONTAINING PROTEIN 20		6	AU222658. CT837522.		Os06g0654900	LOC_Os06g44450.1				GO:0005634 - nucleus, GO:0007623 - circadian rhythm		PO:0009006 - shoot system , PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009010 - seed 
11651	_	OsBBX21, BBX21	_	B-box-containing protein 21			6		 Tolerance and resistance - Stress tolerance	Os06g0661200	LOC_Os06g45040.1				GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0046686 - response to cadmium ion, GO:0010039 - response to iron ion, GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0020141 - stem node , PO:0007616 - flowering stage 
11652	_	OsBBX22, BBX22	_	B-box-containing protein 22			6	CT833308, CT831615, AB001884. Zinc-finger Protein.		Os06g0713000	LOC_Os06g49880.2, LOC_Os06g49880.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed , PO:0007616 - flowering stage 
11653	BBX23	OsBBX23, OsCCT27, CCT27, OsR, OsCOL13, COL13	B-BOX-CONTAINING PROTEIN 23	B-box-containing protein 23, CCT domain-containing gene 27, CCT (CO, CO-LIKE and TOC1) domain protein 27, CCT domain protein 27, CONSTANS-like 13, CO-like 13	B-BOX-CONTAINING PROTEIN 23	oscol13	7		 Reproductive organ - Heading date	Os07g0667300	LOC_Os07g47140.1				GO:0005622 - intracellular, GO:0007623 - circadian rhythm, GO:0032922 - circadian regulation of gene expression, GO:0016563 - transcription activator activity, GO:2000028 - regulation of photoperiodism, flowering, GO:0005634 - nucleus, GO:0008270 - zinc ion binding	TO:0002616 - flowering time	PO:0007616 - flowering stage , PO:0025034 - leaf 
11654	_	OsBBX24, BBX24	_	B-box-containing protein 24			8		 Tolerance and resistance - Stress tolerance	Os08g0178800	LOC_Os08g08120.3, LOC_Os08g08120.2, LOC_Os08g08120.1				GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0010039 - response to iron ion, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold	TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000224 - iron sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0020141 - stem node , PO:0009006 - shoot system 
11655	BBX25	OsBBX25, OsG, OsCCT29, CCT29	B-BOX-CONTAINING PROTEIN 25	B-box-containing protein 25, CCT domain-containing gene 29, CCT (CO, CO-LIKE and TOC1) domain protein 29, CCT domain protein 29, CONSTANS-like gene G, OsCO  like4	B-BOX-CONTAINING PROTEIN 25		8	CT833687. OsCO  like4 in Li et al. 2023.		Os08g0249000	LOC_Os08g15050.1				GO:0007623 - circadian rhythm, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0009006 - shoot system , PO:0007616 - flowering stage , PO:0025034 - leaf 
11656	COL15	OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, OsCOL15/OsBBX26, Hd1-3	CONSTANS-LIKE PROTEIN 15	B-box-containing protein 26, CCT domain-containing gene 30, CCT (CO, CO-LIKE and TOC1) domain protein 30, CCT domain protein 30, CONSTANS-like protein 15, CONSTANS-like transcription factor 15	CONSTANS-LIKE PROTEIN 15	oscol15	8	rice ortholog of AtCOL15.	 Reproductive organ - Heading date	Os08g0536300	LOC_Os08g42440.1				GO:0005622 - intracellular, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0007623 - circadian rhythm	TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0007616 - flowering stage , PO:0025034 - leaf , PO:0009006 - shoot system 
11658	BBX28	OsBBX28, OsCCT32, OsQ, CCT32	B-BOX-CONTAINING PROTEIN 28	B-box-containing protein 28, CCT domain-containing gene 32, CCT (CO, CO-LIKE and TOC1) domain protein 32, CCT domain protein 32	B-BOX-CONTAINING PROTEIN 28		9			Os09g0509700	LOC_Os09g33550.1				GO:0007623 - circadian rhythm		PO:0007616 - flowering stage , PO:0025034 - leaf 
11659	_	OsBBX29, OsDBB1, BBX29, DBB1, DLN230, OsDLN230	_	B-box-containing protein 29, DOUBLE B-BOX zinc finger gene 1, DOUBLE B-BOX 1, DLN repressor 230, DLN motif protein 230			9	CT828272.		Os09g0527900	LOC_Os09g35880.1				GO:0008270 - zinc ion binding, GO:0005622 - intracellular		PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0007616 - flowering stage 
11660	_	OsBBX30, BBX30	_	B-box-containing protein 30			12			Os12g0209200	LOC_Os12g10660.1				GO:0005622 - intracellular, GO:0008270 - zinc ion binding		PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009006 - shoot system 
11661	DVR	OsDVR	DIVINYL REDUCTASE	"Divinyl reductase, \"3, 8-divinyl protochlorophyllide a 8-vinyl reductase\""	DIVINYL REDUCTASE	824ys, dvr	3	GU733918. ADE43128. The mutant 824ys exhibited a yellow-green leaf phenotype, reduced Chl level, arrested chloroplast development, and retarded growth rate. The phenotype of the 824ys mutant was caused by a recessive mutation in a nuclear gene OsDVR  on the short arm of rice chromosome 3.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Coloration - Chlorophyll	Os03g0351200	LOC_Os03g22780.1				GO:0050832 - defense response to fungus, GO:0000166 - nucleotide binding, GO:0009941 - chloroplast envelope, GO:0016020 - membrane, GO:0051744 - 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity, GO:0015995 - chlorophyll biosynthetic process	TO:0000255 - sheath blight disease resistance	
11662	BOC1	OsSRO1c, SRO1c, OsBOC1	BROWNING OF CALLUS1	SRO protein 1c, SIMILAR to RCD1 c, BROWNING OF CALLUS 1		ossro1c-1, ossro1c-2	3	a rice homologue of SRO (similar to RCD one). a SIMILAR TO RADICAL-INDUCED CELL DEATH ONE (SRO) protein. GO:0090333: regulation of stomatal closure. TO:0020097: stomatal opening. GO:2000773: negative regulation of cellular senescence. GO:1903427: negative regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance	Os03g0230300	LOC_Os03g12820.2, LOC_Os03g12820.1				GO:0010119 - regulation of stomatal movement, GO:0009414 - response to water deprivation, GO:0060548 - negative regulation of cell death, GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0006979 - response to oxidative stress	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance, TO:0000605 - hydrogen peroxide content	PO:0000293 - guard cell 
11663	TWI1	OsSRO1a, SRO1a, OsTWI1, RCD1, OsRCD1	TWISTED-LEAF1	SRO protein 1a, SIMILAR to RCD1 a, TWISTED-LEAF 1, Nuclear proteins RCD1		twi1, wi1-1, twi1-2	10	a rice homologue of SRO (similar to RCD one). TO:0000748: leaf morphology trait. a poly(ADP-ribose) polymerase (PARP) domain protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os10g0577800 	LOC_Os10g42710.7, LOC_Os10g42710.6, LOC_Os10g42710.5, LOC_Os10g42710.4, LOC_Os10g42710.1, LOC_Os10g42710.2, LOC_Os10g42710.3				GO:0009651 - response to salt stress, GO:0051595 - response to methylglyoxal, GO:0005634 - nucleus, GO:0009269 - response to desiccation, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0048366 - leaf development, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0001050 - leaf development stage 
11664	_	OsSRO1b, SRO1b	_	SRO protein 1b, SIMILAR to RCD1 b			3	a rice homologue of SRO (similar to RCD one).									
11665	_	OsSRO1d, SRO1d	_	SRO protein 1d, SIMILAR to RCD1 d			6	a rice homologue of SRO (similar to RCD one).									
11666	_	OsSRO1e, SRO1e	_	SRO protein 1e, SIMILAR to RCD1 a			4	a rice homologue of SRO (similar to RCD one).									
11667	CHIB1	Oschib1, chib1, PR-8, PR8, OsPR8, OsPR8b, PR8b	_	pathogenesis-related protein 8, Chitinase 1, class III chitinase Oschib1			10	class III chitinase. AF296279. BGIOSGA032917 (indica). OsPR8b in Wang et al. 2020.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0416500	LOC_Os10g28080.1				GO:0002215 - defense response to nematode, GO:0005975 - carbohydrate metabolic process, GO:0009624 - response to nematode, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009609 - response to symbiotic bacterium, GO:0009738 - abscisic acid mediated signaling, GO:0042742 - defense response to bacterium, GO:0009617 - response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000384 - nematode damage resistance	
11668	CHIB2	Oschib2	_	class III chitinase Oschib2			10	AF229187. chitinase.	 Biochemical character	Os10g0416800	LOC_Os10g28120.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
11669	SAG12	OsSAG12	SENESCENCE-ASSOCIATED GENE 12	Senescence-associated Gene12	SENESCENCE-ASSOCIATED PROTEIN 12		9		 Biochemical character	Os09g0497500	LOC_Os09g32230.1				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
11670	_	OsSAG13	_	Senescence-associated Gene13			3		 Biochemical character	Os03g0269100	LOC_Os03g16230.1, LOC_Os03g16230.2				GO:0000166 - nucleotide binding, GO:0055114 - oxidation reduction, GO:0016491 - oxidoreductase activity		
11671	HSR203J	OsHSR203J	HYPERSENSITIVE-RELATED PROTEIN 203J	Hypersensitive-related protein 203J	HYPERSENSITIVE-RELATED PROTEIN 203J		5		 Biochemical character	Os05g0410200	LOC_Os05g33940.1				GO:0016787 - hydrolase activity		
11672	_	HSR201	_	Hypersensitive-related protein 201, spermidine hydroxycinnamoyl transferase			12	LOC_Os12g27254.	 Biochemical character	Os12g0458100	LOC_Os12g27254.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0008216 - spermidine metabolic process		
11673	SRT701	osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2	SIRTUIN 701	sirtuin 1, sirtuin 701	SIRTUIN 701		4	AAD42226, B8ARK7. Q7XWV4. AF159133. SIR2-type histone deacetylase class IV. Transcriptional silencer. Similar to yeast SIR2 silencing regulator. a sirtuin-like gene. GO:2000882 negative regulation of starch catabolic process. GO:1900056: negative regulation of leaf senescence.	 Vegetative organ - Leaf,  Biochemical character,  Seed - Morphological traits - Endosperm,  Other,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits	Os04g0271000	LOC_Os04g20270.1, LOC_Os04g20270.2				GO:0046872 - metal ion binding, GO:0035067 - negative regulation of histone acetylation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0034355 - NAD salvage, GO:0033552 - response to vitamin B3, GO:0010581 - regulation of starch biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016787 - hydrolase activity, GO:0046169 - methanol biosynthetic process, GO:0017136 - NAD-dependent histone deacetylase activity, GO:0070403 - NAD binding, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0005634 - nucleus, GO:0010150 - leaf senescence, GO:0045820 - negative regulation of glycolysis, GO:0080134 - regulation of response to stress, GO:0048316 - seed development, GO:0005983 - starch catabolic process	TO:0000180 - spikelet fertility, TO:0000723 - microsporocyte development trait, TO:0000653 - seed development trait, TO:0002668 - jasmonic acid content, TO:0000266 - chalky endosperm, TO:0000249 - leaf senescence, TO:0002658 - starch grain synthesis, TO:0000269 - 100-seed weight, TO:0000696 - starch content	PO:0009030 - carpel , PO:0009006 - shoot system , PO:0001170 - seed development stage 
11674	_	osHDA702	_					AAK01712. RPD3/HDA1-like histone deacetylase. GO:0097372: NAD-dependent histone deacetylase activity (H3-K18 specific).	 Biochemical character						GO:0005634 - nucleus, GO:0070932 - histone H3 deacetylation, GO:0070933 - histone H4 deacetylation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific), GO:0046969 - NAD-dependent histone deacetylase activity (H3-K9 specific), GO:0046970 - NAD-dependent histone deacetylase activity (H4-K16 specific)		
11675	_	osSRT702, OsSRT2	_					SIR2-type histone deacetylase class II.									
11676	APIP6	OsAPIP6, OsRING382, RING382, IPI7, OsIPI7	AVRPIZ-T INTERACTING PROTEIN 6	AvrPiz-t Interacting Protein 6, RING-type E3 ubiquitin ligase 382, IPA1 interactor 7	AVRPIZ-T INTERACTING PROTEIN 6	CR-apip6, ipi7-ko	5	a RING E3 ubiquitin ligase.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0154600	LOC_Os05g06270.1, LOC_Os05g06270.2				GO:0008270 - zinc ion binding, GO:0009626 - plant-type hypersensitive response, GO:0050832 - defense response to fungus, GO:0004842 - ubiquitin-protein ligase activity	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	
11677	GL3.1	OsPPKL1, PPKL1, qGL3, OsPP54, PP54, OsGL3.1, qGL3/OsPPKL1	GRAIN LENGTH 3.1	protein phosphatase with Kelch-like repeat domain 1, grain length 3, Grain Length 3.1, Protein phosphatase 54		osppkl1, qgl3, qGL3N411, qGL39311, m-qgl3, cr-qgl3	3	GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. the ortholog of BSU1.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Grain quality,  Biochemical character,  Seed - Morphological traits - Grain shape	Os03g0646900	LOC_Os03g44500.1				GO:0030145 - manganese ion binding, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0004721 - phosphoprotein phosphatase activity, GO:0009741 - response to brassinosteroid stimulus, GO:0005506 - iron ion binding, GO:0009742 - brassinosteroid mediated signaling	TO:0000162 - seed quality, TO:0000266 - chalky endosperm, TO:0002677 - brassinosteroid sensitivity, TO:0000397 - grain size, TO:0000346 - tiller number, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000211 - gel consistency, TO:0000207 - plant height, TO:0002688 - leaf lamina joint bending	
11678	_	OsPPKL2, OsPP73	_	protein phosphatase with Kelch-like repeat domain 2, Protein phosphatase 73		osppkl2	5	Q60EX6. LOC_Os05g05240.	 Biochemical character	Os05g0144400	LOC_Os05g05240.1, LOC_Os05g05240.2				GO:0005634 - nucleus, GO:0004721 - phosphoprotein phosphatase activity, GO:0005506 - iron ion binding, GO:0030145 - manganese ion binding		
11679	_	OsPPKL3, OsPP132	_	protein phosphatase with Kelch-like repeat domain 3, Protein phosphatase 132		osppkl3	12	Q2QM47. LOC_Os12g42310.	 Biochemical character	Os12g0617900	LOC_Os12g42310.1				GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0004721 - phosphoprotein phosphatase activity, GO:0005506 - iron ion binding, GO:0030145 - manganese ion binding, GO:0005886 - plasma membrane		
11680	PL	OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL, Os2R_MYB60, 2R_MYB60	PURPLE LEAF	R2R3-MYB Transcription Factor 55, R2R3-MYB Transcription Factor OsMYB55, purple leaf, R2R3-MYB Transcription Factor 60		pl, pl1, pl2, pl3	5	R2R3-MYB. TO:0020106: Indole-3-acetic acid content.	 Coloration - Anthocyanin,  Other,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os05g0553400	LOC_Os05g48010.1				GO:0009718 - anthocyanin biosynthetic process, GO:0003682 - chromatin binding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0003677 - DNA binding, GO:0009734 - auxin mediated signaling pathway, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence, GO:0009755 - hormone-mediated signaling, GO:0009408 - response to heat, GO:0030912 - response to deep water	TO:0002668 - jasmonic acid content, TO:0002667 - abscisic acid content, TO:0002672 - auxin content, TO:0000071 - anthocyanin content, TO:0000524 - submergence tolerance, TO:0000259 - heat tolerance, TO:0000734 - grain length, TO:0000447 - filled grain number, TO:0000592 - 1000-dehulled grain weight, TO:0000249 - leaf senescence, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0002724 - leaf sheath color, TO:0000326 - leaf color	PO:0001054 - 4 leaf senescence stage 
11681	_	GAT1	_	class I glutamine amidotransferase, glutamine amidotransferase 1			2	BAD08105.		Os02g0708100	LOC_Os02g47850.1, LOC_Os02g47850.2, LOC_Os02g47850.3				GO:0070409 - carbamoyl phosphate biosynthetic process, GO:0009570 - chloroplast stroma, GO:0006543 - glutamine catabolic process, GO:0016036 - cellular response to phosphate starvation		
11682	MYB8	OsMYB8, OsMYB305, MYB305, Os2R_MYB9, 2R_MYB9	MYB TRANSCRIPTION FACTOR 8	myb transcription factor 8, transcription factor MYB8, R2R3-MYB Transcription Factor 9	MYB TRANSCRIPTION FACTOR 8		1	R2R3-MYB. AY459338, AB010836. OsMYB305 in Wang et al. 2020. TO:0020100: nitrate uptake. GO:1901698: response to nitrogen compound. PO:0030123: panicle inflorescence. GO:1904844: response to L-glutamine. TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. GO:2001007: negative regulation of cellulose biosynthetic process. GO:1900055: regulation of leaf senescence. GO:1903338: regulation of cell wall organization or biogenesis. GO:1902427: regulation of water channel activity. GO:1902066: regulation of cell wall pectin metabolic process.	 Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Leaf,  Coloration,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0637800	LOC_Os01g45090.1				GO:0008643 - carbohydrate transport, GO:0006109 - regulation of carbohydrate metabolic process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0052546 - cell wall pectin metabolic process, GO:0003677 - DNA binding, GO:0030244 - cellulose biosynthetic process, GO:0003682 - chromatin binding, GO:0060359 - response to ammonium ion, GO:0042594 - response to starvation, GO:0010167 - response to nitrate, GO:0009964 - negative regulation of flavonoid biosynthetic process, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0042128 - nitrate assimilation	TO:0000552 - shoot dry weight, TO:0000333 - sugar content, TO:0000249 - leaf senescence, TO:0000011 - nitrogen sensitivity, TO:0000346 - tiller number, TO:0000328 - sucrose content, TO:0006005 - fructose content, TO:0002616 - flowering time, TO:0002668 - jasmonic acid content, TO:0000474 - glume opening	PO:0007616 - flowering stage , PO:0009029 - stamen , PO:0009005 - root , PO:0009036 - lodicule , PO:0009038 - palea , PO:0009037 - lemma , PO:0020142 - stem internode , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0020141 - stem node , PO:0009073 - stigma 
11683	MST8	OsMST8, OSMST8, OsSTP8, STP8	MONOSACCHARIDE TRANSPORTER 8	Monosaccharide transporter 8, Sugar Transport Protein 8, STP protein 8, monosaccharide transporter STP8	MONOSACCHARIDE TRANSPORTER 8		1	AY822464. Q94EC4.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os01g0567500	LOC_Os01g38670.1				GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0009624 - response to nematode, GO:0008506 - sucrose:hydrogen symporter activity, GO:0005634 - nucleus, GO:0009750 - response to fructose stimulus, GO:0015293 - symporter activity, GO:0009555 - pollen development, GO:0016021 - integral to membrane, GO:0015749 - monosaccharide transport, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0005773 - vacuole	TO:0000238 - growth media composition sensitivity, TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
11684	MST7	OsMST7, OSMST7, OsSTP7, STP7	MONOSACCHARIDE TRANSPORTER 7	Monosaccharide transporter 7, Sugar Transport Protein 7, STP protein 7, monosaccharide transporter STP7	MONOSACCHARIDE TRANSPORTER 7		1	Q94EC3.	 Biochemical character	Os01g0567600	LOC_Os01g38680.1				GO:0008506 - sucrose:hydrogen symporter activity, GO:0005773 - vacuole, GO:0015749 - monosaccharide transport, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0009624 - response to nematode		
11685	CIN3	OSINV4, OsINV4, INV4, OsCIN3	CELL-WALL INVERTASE 3	cell wall invertase 4, cell-wall invertase 3	CELL-WALL INVERTASE 3	inv4	4	Q0JDC6. AY220486. AY578160. AY575550. AY342320. Q01IS8. GO:0071836: nectar secretion. GO:0080167: response to karrikin.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os04g0413200	LOC_Os04g33720.1				GO:0005618 - cell wall, GO:0005982 - starch metabolic process, GO:0048046 - apoplast, GO:0051670 - inulinase activity, GO:0009611 - response to wounding, GO:0031219 - levanase activity, GO:0004575 - sucrose alpha-glucosidase activity, GO:0005987 - sucrose catabolic process, GO:0005773 - vacuole	TO:0000696 - starch content, TO:0000328 - sucrose content, TO:0000421 - pollen fertility, TO:0000300 - glucose content, TO:0006005 - fructose content	PO:0009005 - root , PO:0009066 - anther 
11686	INV1	OSINV1, OsINV1, OsCIN7, OsCIN8	CELL WALL INVERTASE 1	cell wall invertase 1, cell-wall invertase 7, cell-wall invertase 8	CELL WALL INVERTASE 1		9	AF155121, C72341. AY578164. AY575555. A2YZ01, Q0J360. GO:0071836: nectar secretion. GO:0080167: response to karrikin. OsCIN8 in Ji et al. 2005.	 Biochemical character	Os09g0255000	LOC_Os09g08072.1				GO:0005618 - cell wall, GO:0031219 - levanase activity, GO:0009611 - response to wounding, GO:0048046 - apoplast, GO:0005773 - vacuole, GO:0005982 - starch metabolic process, GO:0004575 - sucrose alpha-glucosidase activity, GO:0051670 - inulinase activity		
11687	_	OSINV2, OsINV2, OsVIN1, VIN1	_	vacuolar acid invertase 2, vacuolar invertase 1		osvin1	4	AF276703, C71989. AU101080. AY575556. BGIOSGA016831 (indica). sucrose alpha-glucosidase. OsVIN1 in Ji et al. 2005.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0535600	LOC_Os04g45290.1, LOC_Os04g45290.2				GO:0004575 - sucrose alpha-glucosidase activity, GO:0009414 - response to water deprivation, GO:0005975 - carbohydrate metabolic process, GO:0009505 - plant-type cell wall, GO:0005773 - vacuole	TO:0000432 - temperature response trait, TO:0000276 - drought tolerance	
11688	SMS2	INV3, OSINV3, OsINV3, OsVIN2, VIN2, VINV, OsSMS2	SMALL GRAIN SIZE 2	invertase 3, fructosyl transferase, vacuolar invertase 2, small grain size 2	INVERTASE 3	osvin2-1, osvin2-2, osvin2-3, sms2	2	AF276704, C25279. AY575557. OsVIN2 in Ji et al. 2005, Kim et al. 2021. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os02g0106100	LOC_Os02g01590.1, LOC_Os02g01590.2				GO:0015770 - sucrose transport, GO:0006534 - cysteine metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0009505 - plant-type cell wall, GO:0006555 - methionine metabolic process, GO:0004575 - sucrose alpha-glucosidase activity, GO:0005773 - vacuole, GO:0019541 - propionate metabolic process, GO:0048316 - seed development, GO:0005987 - sucrose catabolic process, GO:0019252 - starch biosynthetic process	TO:0000557 - secondary branch number, TO:0000391 - seed size, TO:0000653 - seed development trait, TO:0000590 - grain weight, TO:0000657 - spikelet anatomy and morphology trait, TO:0000307 - hexose content, TO:0000300 - glucose content, TO:0000696 - starch content, TO:0000328 - sucrose content, TO:0000397 - grain size, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000207 - plant height, TO:0006005 - fructose content, TO:0000382 - 1000-seed weight, TO:0000734 - grain length	PO:0009086 - endocarp , PO:0001170 - seed development stage 
11689	CIN1	OSCIN1, OsCIN1	CELL-WALL INVERTASE 1	cell-wall invertase 1, Cell wall-bound invertase 1	CELL-WALL INVERTASE 1		2	cell wall invertase. AB073749. AY578158. Q0E0P0. GO:0071836: nectar secretion. GO:0080167: response to karrikin. GU797950-GU797999 (O.sativa and other wild rice species). AY575548.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0534400	LOC_Os02g33110.3, LOC_Os02g33110.2, LOC_Os02g33110.1				GO:0004575 - sucrose alpha-glucosidase activity, GO:0050832 - defense response to fungus, GO:0005982 - starch metabolic process, GO:0051670 - inulinase activity, GO:0048046 - apoplast, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0051707 - response to other organism, GO:0031219 - levanase activity, GO:0005618 - cell wall, GO:0005773 - vacuole	TO:0006001 - salt tolerance, TO:0000074 - blast disease	
11690	_	OsGT1	_	GLYCOSYLTRANSFERASE1		osgt1, osgt1-1, osgt1-2	1		 Biochemical character,  Reproductive organ	Os01g0262600	LOC_Os01g15780.1, LOC_Os01g15780.2				GO:0009058 - biosynthetic process, GO:0005794 - Golgi apparatus		
11691	MIR319A	OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p	MICRORNA319A	rice microRNA319a, MicroRNA319a			1	miRBASE accession: MI0001098. predicted target(s): metacaspase. AY551257. LM382867 LM379311. TO:0000820: leaf vein morphology trait. GO:1900366: negative regulation of defense response to insect.	 Tolerance and resistance - Disease resistance,  Other,  Vegetative organ - Leaf,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0659400	LOC_Os01g46984.1				GO:0002213 - defense response to insect, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0009965 - leaf morphogenesis, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000542 - leaf length to width ratio, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000370 - leaf width	
11692	PCF5	OsPCF5	PROLIFERATING CELL FACTOR 5		PROLIFERATING CELL FACTOR 5		11	AB071805. Q8LT07. a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. a TCP domain-containing protein that belongs to the bHLH family. GO:2000068: regulation of defense response to insect.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Insect resistance	Os01g0213800	LOC_Os01g11550.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0005652 - nuclear lamina, GO:0002213 - defense response to insect, GO:0005634 - nucleus	TO:0000424 - brown planthopper resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11693	PCF6	OsPCF6	PROLIFERATING CELL FACTOR 6		PROLIFERATING CELL FACTOR 6		3	a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071806. Q10CE8. GO:2000377: regulation of reactive oxygen species metabolic process.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os03g0785800	LOC_Os03g57190.1				GO:0007275 - multicellular organismal development, GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0002213 - defense response to insect, GO:0005634 - nucleus	TO:0000303 - cold tolerance, TO:0000424 - brown planthopper resistance	
11694	PCF7	OsPCF7	PROLIFERATING CELL FACTOR 7		PROLIFERATING CELL FACTOR 7		1	a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071807. Q8LT05.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0755500	LOC_Os01g55100.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11695	PCF8	OsPCF8	PROLIFERATING CELL FACTOR 8		PROLIFERATING CELL FACTOR 8		12	a putative miR319 target gene. proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071808. Q2QM59.	 Other,  Tolerance and resistance - Stress tolerance	Os12g0616400	LOC_Os12g42190.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0007275 - multicellular organismal development, GO:0003677 - DNA binding, GO:0009629 - response to gravity, GO:0009845 - seed germination	TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0002693 - gravity response trait	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
11696	_	OsTCP14	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 14				a putative miR319 target gene. a plant-specifictranscription factor.	 Other								
11697	PCF1	OsPCF1	PROLIFERATING CELL FACTOR 1	PROMOTER BINDING FACTOR1	PROLIFERATING CELL FACTOR 1		4	proliferating cell nuclear antigen (PCNA) promoter binding factor. D87260. O23875.	 Other	Os04g0194600	LOC_Os04g11830.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0003677 - DNA binding, GO:0005634 - nucleus		
11698	PCF2	OsPCF2	PROLIFERATING CELL FACTOR 2	PROMOTER BINDING FACTOR2	PROLIFERATING CELL FACTOR 2		8	proliferating cell nuclear antigen (PCNA) promoter binding factor. D87261. Q6ZBH6.	 Other	Os08g0544800	LOC_Os08g43160.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
11699	PCF3	OsPCF3	PROLIFERATING CELL FACTOR 3		PROLIFERATING CELL FACTOR 3		11	proliferating cell nuclear antigen (PCNA) promoter binding factor. AB071804. Q53PH2.	 Tolerance and resistance - Stress tolerance,  Other	Os11g0175700	LOC_Os11g07460.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11700	GH9A3	OsGH9A3	GLYCOSIDE HYDROLASE 9A3	glycoside hydrolase OsGH9A3, glycoside hydrolase 9A3	GLYCOSIDE HYDROLASE 9A3		3	Q84R49.	 Biochemical character	Os03g0736300	LOC_Os03g52630.2, LOC_Os03g52630.1				GO:0030245 - cellulose catabolic process, GO:0016021 - integral to membrane, GO:0008810 - cellulase activity		
11701	GH9B1	OsGH9B1	GLYCOSIDE HYDROLASE 9B1	glycoside hydrolase OsGH9B1, glycoside hydrolase 9B1	GLYCOSIDE HYDROLASE 9B1		2	Q6Z2J3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0733300	LOC_Os02g50040.1				GO:0042547 - cell wall modification during multidimensional cell growth, GO:0010215 - cellulose microfibril organization, GO:0030245 - cellulose catabolic process, GO:0009507 - chloroplast, GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0009827 - plant-type cell wall modification	TO:0000068 - lodging incidence	
11702	GH9B2	OsGH9B2	GLYCOSIDE HYDROLASE 9B2	glycoside hydrolase OsGH9B2, glycoside hydrolase 9B2	GLYCOSIDE HYDROLASE 9B2		1	Q8LQ92.	 Biochemical character	Os01g0312800	LOC_Os01g21070.1				GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity, GO:0005576 - extracellular region		
11703	GH9B3	OsGH9B3	GLYCOSIDE HYDROLASE 9B3	glycoside hydrolase OsGH9B3, glycoside hydrolase 9B3	GLYCOSIDE HYDROLASE 9B3		6	Q652F9.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0256900	LOC_Os06g14540.1				GO:0042547 - cell wall modification during multidimensional cell growth, GO:0005576 - extracellular region, GO:0010215 - cellulose microfibril organization, GO:0030245 - cellulose catabolic process, GO:0009827 - plant-type cell wall modification, GO:0009507 - chloroplast, GO:0008810 - cellulase activity	TO:0000068 - lodging incidence	
11704	GH9B4	OsGH9B4	GLYCOSIDE HYDROLASE 9B4	glycoside hydrolase OsGH9B4, glycoside hydrolase 9B4	GLYCOSIDE HYDROLASE 9B4		4	Q7XTH4.	 Biochemical character	Os04g0443300	LOC_Os04g36610.1				GO:0009505 - plant-type cell wall, GO:0030245 - cellulose catabolic process, GO:0005886 - plasma membrane, GO:0008810 - cellulase activity, GO:0005576 - extracellular region		
11705	GH9B5	OsGH9B5	_	glycoside hydrolase OsGH9B5, glycoside hydrolase 9B5	_		9	Q69SG5.	 Biochemical character	Os09g0533900	LOC_Os09g36350.1, LOC_Os09g36350.2				GO:0005886 - plasma membrane, GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity		
11706	GH9B6	OsGH9B6	GLYCOSIDE HYDROLASE 9B6	glycoside hydrolase OsGH9B6, glycoside hydrolase 9B6	GLYCOSIDE HYDROLASE 9B6		6	Q5Z9P8.	 Biochemical character,  Reproductive organ	Os06g0715300	LOC_Os06g50140.1				GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		PO:0000084 - plant sperm cell 
11707	GH9B7	OsGH9B7	GLYCOSIDE HYDROLASE 9B7	glycoside hydrolase OsGH9B7, glycoside hydrolase 9B7	GLYCOSIDE HYDROLASE 9B7		2	Q67UW5.	 Biochemical character	Os02g0151300	LOC_Os02g05744.1				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity		
11708	GH9B8	OsGH9B8	GLYCOSIDE HYDROLASE 9B8	glycoside hydrolase OsGH9B8, glycoside hydrolase 9B8	GLYCOSIDE HYDROLASE 9B8		2	Q6Z5P2.	 Biochemical character	Os02g0738600	LOC_Os02g50490.1				GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity		
11709	GH9B9	OsGH9B9	GLYCOSIDE HYDROLASE 9B9	glycoside hydrolase OsGH9B9, glycoside hydrolase 9B9	GLYCOSIDE HYDROLASE 9B9		6	Q654U4.	 Biochemical character	Os06g0247900	LOC_Os06g13830.1				GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process		
11710	GH9B10	OsGH9B10	GLYCOSIDE HYDROLASE 9B10	glycoside hydrolase OsGH9B10, glycoside hydrolase 9B10	GLYCOSIDE HYDROLASE 9B10		8	Q84Q51.	 Biochemical character	Os08g0425300	LOC_Os08g32940.1				GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process		
11711	GH9B11	OsGH9B11	GLYCOSIDE HYDROLASE 9B11	glycoside hydrolase OsGH9B11, glycoside hydrolase 9B11	GLYCOSIDE HYDROLASE 9B11		9	Q6H3Z9.	 Biochemical character	Os09g0394300	LOC_Os09g23084.1				GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process		
11712	GH9B12	OsGH9B12	GLYCOSIDE HYDROLASE 9B12	glycoside hydrolase OsGH9B12, glycoside hydrolase 9B12	GLYCOSIDE HYDROLASE 9B12		5	P0C1U5.	 Biochemical character	Os05g0129200	LOC_Os05g03840.1				GO:0005576 - extracellular region, GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process		
11713	GH9B13	OsGH9B13	GLYCOSIDE HYDROLASE 9B13	glycoside hydrolase OsGH9B13, glycoside hydrolase 9B13	GLYCOSIDE HYDROLASE 9B13		8	Q6ZA06.	 Biochemical character	Os08g0387400	LOC_Os08g29770.1				GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity		
11714	GH9B14	OsGH9B14	GLYCOSIDE HYDROLASE 9B14	glycoside hydrolase OsGH9B14, glycoside hydrolase 9B14	GLYCOSIDE HYDROLASE 9B14		9	Q69NF5.	 Biochemical character	Os09g0530200	LOC_Os09g36060.1				GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process, GO:0008810 - cellulase activity		
11715	_	OsGH9B15, OsGLU14, GH9B15, GLU14	_	glycoside hydrolase OsGH9B15, glycoside hydrolase 9B15, endoglucanase 14	_		2	Q6Z715.	 Biochemical character	Os02g0123700	LOC_Os02g03120.1				GO:0008810 - cellulase activity, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process		
11716	GH9B16	OsGH9B16	GLYCOSIDE HYDROLASE 9B16	glycoside hydrolase OsGH9B16, glycoside hydrolase 9B16	GLYCOSIDE HYDROLASE 9B16		8	Q6YXT7. LOC_Os08g02220.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0114200	LOC_Os08g02220.1				GO:0008810 - cellulase activity, GO:0009827 - plant-type cell wall modification, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process	TO:0000068 - lodging incidence	
11717	GH9B17	OsGH9B17	GLYCOSIDE HYDROLASE 9B17	glycoside hydrolase OsGH9B17, glycoside hydrolase 9B17	GLYCOSIDE HYDROLASE 9B17		12		 Biochemical character	Os12g0428150	LOC_Os12g24040.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
11718	GH9B18	OsGH9B18	GLYCOSIDE HYDROLASE 9B18	glycoside hydrolase OsGH9B18, glycoside hydrolase 9B18	GLYCOSIDE HYDROLASE 9B18		2	Q6K7G9.	 Biochemical character	Os02g0778600	LOC_Os02g53820.1, LOC_Os02g53820.2				GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0008810 - cellulase activity		
11719	GH9C1	OsGH9C1, RHC, OsRHC	GLYCOSIDE HYDROLASE 9C1	glycoside hydrolase OsGH9C1, glycoside hydrolase 9C1, Root Hair Cellulase	GLYCOSIDE HYDROLASE 9C1	osrhc	4	Q0J930. GO:0035618: root hair. TO:0000993: cellulose content.	 Biochemical character,  Vegetative organ - Root	Os04g0674800	LOC_Os04g57860.1				GO:0005886 - plasma membrane, GO:0048767 - root hair elongation, GO:0008810 - cellulase activity, GO:0009664 - plant-type cell wall organization, GO:0005576 - extracellular region, GO:0030245 - cellulose catabolic process, GO:0030246 - carbohydrate binding	TO:0002665 - root hair length	PO:0009005 - root 
11720	GH9C2	OsGH9C2	GLYCOSIDE HYDROLASE 9C2	glycoside hydrolase OsGH9C2, glycoside hydrolase 9C2	GLYCOSIDE HYDROLASE 9C2		1	Q5NAT8.	 Biochemical character	Os01g0219600	LOC_Os01g12030.1				GO:0005576 - extracellular region, GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process, GO:0030246 - carbohydrate binding		
11722	GH9C4	OsGH9C4	GLYCOSIDE HYDROLASE 9C4	glycoside hydrolase OsGH9C4, glycoside hydrolase 9C4	GLYCOSIDE HYDROLASE 9C4		5	Q6L4I2.	 Biochemical character	Os05g0212300	LOC_Os05g12150.1				GO:0008810 - cellulase activity, GO:0030245 - cellulose catabolic process, GO:0005576 - extracellular region, GO:0030246 - carbohydrate binding		
11723	_	JMJ703	_	Jumonji 703		jmj703	5	JmjC domain containing protein. LOC_Os05g10770. Q53WJ1. H3K4 demethylase.	 Reproductive organ - panicle	Os05g0196500	LOC_Os05g10770.1				GO:0032453 - histone demethylase activity (H3-K4 specific), GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0034720 - histone H3-K4 demethylation, GO:0008198 - ferrous iron binding, GO:0045814 - negative regulation of gene expression, epigenetic, GO:0040010 - positive regulation of growth rate, GO:0051213 - dioxygenase activity, GO:0010229 - inflorescence development, GO:0006351 - transcription, DNA-dependent	TO:0000621 - inflorescence development trait, TO:0006032 - panicle size	PO:0001083 - inflorescence development stage 
11724	LINE1	LINE1	RETROTRANSPOSON LINE1	non-LTR retrotransposable element LINE1					 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
11725	COI2	OsCOI2	CORONATINE INSENSITIVE 2	coronatine insensitive 2			3			Os03g0265500	LOC_Os03g15880.1, LOC_Os03g15880.2, LOC_Os03g15880.3, LOC_Os03g15880.4, LOC_Os03g15880.5				GO:0050832 - defense response to fungus, GO:0031348 - negative regulation of defense response, GO:0019005 - SCF ubiquitin ligase complex, GO:0009611 - response to wounding, GO:0009625 - response to insect, GO:0009641 - shade avoidance, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009909 - regulation of flower development, GO:0010118 - stomatal movement, GO:0010218 - response to far red light, GO:0042742 - defense response to bacterium		
11727	_	OsCLP, CLP	_	chitinase-like protein		osclp	1	BAB89707. TO:0020108: root cortical cell length. TO:0006047: calcium concentration. TO:0000911: trichome anatomy and morphology trait.	 Vegetative organ - Root,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits	Os01g0937050	LOC_Os01g71080.1				GO:0048046 - apoplast, GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis, GO:0045493 - xylan catabolic process, GO:0048364 - root development, GO:0019722 - calcium-mediated signaling	TO:0006032 - panicle size, TO:0000576 - stem length, TO:0000640 - total root number, TO:0000207 - plant height, TO:0000227 - root length, TO:0000484 - seed shape, TO:0006036 - stem elongation, TO:0000656 - root development trait, TO:0002655 - starch grain size, TO:0000181 - seed weight, TO:0000304 - seed thickness, TO:0000472 - vascular bundle number, TO:0000370 - leaf width, TO:0000145 - internode length	PO:0009046 - flower , PO:0020104 - leaf sheath , PO:0009009 - plant embryo , PO:0001031 - 4 root elongation stage , PO:0009089 - endosperm , PO:0007089 - stem elongation stage , PO:0007520 - root development stage , PO:0007033 - whole plant development stage , PO:0009047 - stem , PO:0009005 - root 
11728	_	OsXIP, XIP	_	xylanase inhibitor protein			5	LOC_Os05g15880. glycosyl hydrolase. One of the two candidate genes within the grain weight major QTL region OsqGW5.1 (Daware et al. 2016).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0247800	LOC_Os05g15880.1				GO:0005975 - carbohydrate metabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0003824 - catalytic activity, GO:0009611 - response to wounding, GO:0080027 - response to herbivore	TO:0000424 - brown planthopper resistance, TO:0000054 - animal damage resistance, TO:0000172 - jasmonic acid sensitivity	PO:0009010 - seed 
11729	_	riceXIP	_	xylanase inhibitor protein			11	BAA77780. Q53NL5.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0701100	LOC_Os11g47520.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006952 - defense response, GO:0005576 - extracellular region		
11730	RIXI 	C10701	_	xylanase inhibitor protein, rice xylanase inhibitor			11	D55712. BAA23810. Q7GCM7. class III chitinase.	 Tolerance and resistance - Disease resistance	Os11g0701800	LOC_Os11g47580.1				GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005576 - extracellular region, GO:0006952 - defense response	TO:0000074 - blast disease	
11731	DST	OsDST, DLN102, OsDLN102, HST1, OsHST1	DROUGHT AND SALT TOLERANCE	zinc finger transcription factor DST, Drought and Salt Tolerance gene, DLN repressor 102, DLN motif protein 102, heat stress-tolerant 1		reg1, dst, hst1	3	GQ178286. a negative regulator of grain number. a C2H2 zinc nger transcription factor. GO:1901001: negative regulation of response to salt stress. GO:0080148: negative regulation of response to water deprivation. GO:0090333: regulation of stomatal closure. GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement. TO:0000905: seed yield trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity	Os03g0786400	LOC_Os03g57240.1				GO:0010229 - inflorescence development, GO:0005622 - intracellular, GO:0009408 - response to heat, GO:0009648 - photoperiodism, GO:0009651 - response to salt stress, GO:0030104 - water homeostasis, GO:0008270 - zinc ion binding, GO:0010119 - regulation of stomatal movement, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation	TO:0000447 - filled grain number, TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance, TO:0000456 - spikelet number, TO:0000095 - osmotic response sensitivity, TO:0001016 - relative chlorophyll content, TO:0002660 - cytokinin content, TO:0000455 - seed set percent, TO:0000449 - grain yield per plant, TO:0000609 - potassium content, TO:0000136 - relative water content, TO:0000259 - heat tolerance, TO:0006002 - proline content, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000370 - leaf width, TO:0002759 - grain number, TO:0000608 - sodium content, TO:0000143 - relative biomass, TO:0000050 - inflorescence branching, TO:0000566 - stomatal frequency	PO:0025034 - leaf 
11733	AT1	OsAT1, OsAt1	ACYLTRANSFERASE 1	acyltransferase 1	ACYLTRANSFERASE 1		1		 Biochemical character	Os01g0615300	LOC_Os01g42880.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11734	AT2	OsAT2, OsAt2	ACYLTRANSFERASE 2	acyltransferase 2	ACYLTRANSFERASE 2		1	LOC_Os01g42870.	 Biochemical character	Os01g0615200	LOC_Os01g42870.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11735	AT3	OsAT3, OsAt3	ACYLTRANSFERASE 3	acyltransferase 3	ACYLTRANSFERASE 3		5	LOC_Os05g04584.	 Biochemical character	Os05g0136900	LOC_Os05g04584.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11736	PMT	OsAT4, OsAt4, AT4, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1	P-COUMAROYL-COA MONOLIGNOL TRANSFERASE	acyltransferase 4, p-coumarate monolignol transferase, p-coumaroyl-CoA monolignol transferase 1, p-Coumaroyl-CoA monolignol transferase, rho-Coumaroyl-CoA monolignol transferase	P-COUMAROYL-COA MONOLIGNOL TRANSFERASE		1	an HxxxD acyltransferase.	 Biochemical character	Os01g0291500	LOC_Os01g18744.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11737	AT5	OsAT5, OsAt5, OsFMT1, FMT1, OsFMT/AT5, OsFMT, FMT	ACYLTRANSFERASE 5	acyltransferase 5, feruloyl-coenzyme A monolignol transferase 1, feruloyl-CoA monolignol transferase 1	ACYLTRANSFERASE 5		5	a BAHD feruloyl-coenzyme A monolignol transferase.	 Biochemical character	Os05g0278500	LOC_Os05g19910.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11738	AT6	OsAT6, OsAt6	ACYLTRANSFERASE 6	acyltransferase 6	ACYLTRANSFERASE 6		1		 Biochemical character	Os01g0179000	LOC_Os01g08380.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11739	AT7	OsAT7, OsAt7	ACYLTRANSFERASE 7	acyltransferase 7	ACYLTRANSFERASE 7		5	LOC_Os05g08640. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os05g0179300	LOC_Os05g08640.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11740	AT8	OsAT8, OsAt8	ACYLTRANSFERASE 8	acyltransferase 8	ACYLTRANSFERASE 8		6	LOC_Os06g39470. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os06g0595800	LOC_Os06g39470.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11741	AT9	OsAT9, OsAt9	ACYLTRANSFERASE 9	acyltransferase 9	ACYLTRANSFERASE 9		1	LOC_Os01g09010. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os01g0185300	LOC_Os01g09010.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11742	AT10	OsAT10, OsAt10	ACYLTRANSFERASE 10	acyltransferase 10	ACYLTRANSFERASE 10		6	LOC_Os06g39390. a BAHD Acyltransferase. BAHD acyl-coenzyme A-utilizing transferase. a p-coumaroyl coenzyme A transferase. a putative arabinoxylan feruloyl transferase gene from family PF02458.	 Biochemical character	Os06g0594600 	LOC_Os06g39390.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11743	AT11	OsAT11, OsAt11	ACYLTRANSFERASE 11	acyltransferase 11	ACYLTRANSFERASE 11		4	LOC_Os04g11810.	 Biochemical character	Os04g0194466	LOC_Os04g11810.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11744	AT12	OsAT12, OsAt12	ACYLTRANSFERASE 12	acyltransferase 12	ACYLTRANSFERASE 12		4	LOC_Os04g09590.	 Biochemical character	Os04g0175500	LOC_Os04g09590.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11745	AT13	OsAT13, OsAt13	ACYLTRANSFERASE 13	acyltransferase 13	ACYLTRANSFERASE 13		10	LOC_Os10g01930.	 Biochemical character	Os10g0108800	LOC_Os10g01930.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11746	AT14	OsAT14, OsAt14	ACYLTRANSFERASE 14	acyltransferase 14	ACYLTRANSFERASE 14		10	LOC_Os10g02000.	 Biochemical character	Os10g0109200	LOC_Os10g02000.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11747	AT15	OsAT15, OsAt15	ACYLTRANSFERASE 15	acyltransferase 15	ACYLTRANSFERASE 15		10	LOC_Os10g01920.	 Biochemical character	Os10g0108700	LOC_Os10g01920.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11748	AT16	OsAT16, OsAt16	ACYLTRANSFERASE 16	acyltransferase 16	ACYLTRANSFERASE 16		10	LOC_Os10g01800.	 Biochemical character	Os10g0107400	LOC_Os10g01800.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11749	AT17	OsAT17, OsAt17	ACYLTRANSFERASE 17	acyltransferase 17	ACYLTRANSFERASE 17		10	LOC_Os10g03360.	 Biochemical character	Os10g0122300	LOC_Os10g03360.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11750	AT18	OsAT18, OsAt18	ACYLTRANSFERASE 18	acyltransferase 18	ACYLTRANSFERASE 18		10	LOC_Os10g03390.	 Biochemical character	Os10g0122500	LOC_Os10g03390.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11751	AT19	OsAT19, OsAt19	ACYLTRANSFERASE 19	acyltransferase 19	ACYLTRANSFERASE 19		4	LOC_Os04g09260.	 Biochemical character	Os04g0172400	LOC_Os04g09260.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
11752	AT20	OsAT20, OsAt20	ACYLTRANSFERASE 20	acyltransferase 20	ACYLTRANSFERASE 20		6	LOC_Os06g48560.	 Biochemical character	Os06g0699100	LOC_Os06g48560.1						
11753	_	OsPAPST1	_	3'-Phosphoadenosine 5'-Phosphosulfate Transporter1		papst1	1		 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os01g0265200	LOC_Os01g16040.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
11754	BLH1	OsBLH1	BEL1-LIKE HOMEODOMAIN GENE 1	BEL1-like homeodomain gene 1	BEL1-LIKE HOMEODOMAIN PROTEIN 1		12		 Reproductive organ - Spikelet, flower, glume, awn	Os12g0160500	LOC_Os12g06340.1, LOC_Os12g06340.2, LOC_Os12g06340.3				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
11755	KAN4	OsKAN4	KANADI 4	OsKANADI4, KANADI4			3	a rice homologue of Arabidopsis KANADI. GO:0080186: developmental vegetative growth.	 Vegetative organ - Leaf,  Heterochrony,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0766500	LOC_Os03g55760.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0048366 - leaf development, GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0040034 - regulation of development, heterochronic		PO:0001050 - leaf development stage 
11756	MIR444A	OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p	MICRORNA444A	rice microRNA444a				miRBASE accession: MI0001719. predicted target(s): MADS-box transcription factors. miR444 targets: MIKC-type MADS-box genes MADS-23, MADS-27a, MADS-27b and MADS-57. GO:1902025: nitrate import. TO:0020094: nitrate content. TO:0020100: nitrate uptake. LM379526 LM380638 LM382870. miR444 in Wang et al. 2016.  GO:2000488: positive regulation of brassinosteroid biosynthetic process. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance						GO:0016132 - brassinosteroid biosynthetic process, GO:0060359 - response to ammonium ion, GO:0016442 - RNA-induced silencing complex, GO:0051607 - defense response to virus, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0010167 - response to nitrate, GO:0016036 - cellular response to phosphate starvation, GO:0048364 - root development, GO:0009742 - brassinosteroid mediated signaling, GO:0035068 - micro-ribonucleoprotein complex	TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000227 - root length, TO:0000656 - root development trait, TO:0002676 - brassinosteroid content, TO:0001007 - coleoptile length, TO:0000148 - viral disease resistance	PO:0009005 - root , PO:0007520 - root development stage 
11757	_	OsPIANK1	_	Ankyrin Repeat-Containing Protein OsPIANK1			11		 Tolerance and resistance - Disease resistance	Os11g0182500	LOC_Os11g07980.1, LOC_Os11g07980.2						
11758	IRX9	OsIRX9, OsGT43C/OsIRX9, OsGT43C	IRREGULAR XYLEM 9	glycosyltransferase family GT43 member C	GLYCOSYLTRANSFERASE FAMILY GT43 MEMBER C		7	Q6Z3Y6. Glycosyltransferase family 43 protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0694400	LOC_Os07g49370.1				GO:0045492 - xylan biosynthetic process, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0009827 - plant-type cell wall modification, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	TO:0002649 - pesticide sensitivity	
11759	_	OsIRX9L, OsGT43F/OsIRX9L, OsGT43F	_	IRREGULAR XYLEM 9L, glycosyltransferase family GT43 member F			1	Q5QM25. LOC_Os01g48440. Glycosyltransferase family 43 protein.	 Biochemical character	Os01g0675500	LOC_Os01g48440.1, LOC_Os01g48440.2, LOC_Os01g48440.3				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity		
11760	IRX14	OsIRX14, OsGT43J, GT43J, OsGT43J/OsIRX14	IRREGULAR XYLEM 14	glycosyltransferase family GT43 member J	GLYCOSYLTRANSFERASE FAMILY GT43 MEMBER J		6	Q653F4. Glycosyltransferase family 43 protein. an IRX14 homolog.	 Biochemical character	Os06g0687900	LOC_Os06g47340.1				GO:0000139 - Golgi membrane, GO:0048367 - shoot development, GO:0045492 - xylan biosynthetic process, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0010417 - glucuronoxylan biosynthetic process, GO:0010154 - fruit development, GO:0010051 - xylem and phloem pattern formation, GO:0042285 - xylosyltransferase activity, GO:0016021 - integral to membrane, GO:0009827 - plant-type cell wall modification		
11761	SERK1	OsSERK1, OsSERK2, OsBiSERK1, SERK2, BiSERK1, OsSerk2, OsBAK1-2	SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE  1	somatic embryogenesis receptor-like kinase 2, somatic embryogenesis receptor kinase 2, bri1-associated receptor kinase 1 (BAK1) homologue 2	SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE  1		4	BF889447, AY652735. AAU88198. AL606636. An XA21-Associated Kinase. OsSERK1 in Hu et al. 2005 and Song et al. 2008. OsSERK2 in Feng et al. 2022, Wang et al. 2021, Zhao et al. 2024. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os04g0457800	LOC_Os04g38480.1, LOC_Os04g38480.2				GO:0005524 - ATP binding, GO:0009742 - brassinosteroid mediated signaling, GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0001654 - eye development, GO:0009737 - response to abscisic acid stimulus, GO:0010942 - positive regulation of cell death	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height	
11762	_	OsRFPH2-1, OsRING310, RING310	_	RING finger protein OsRFPH2-1, RING-H2 protein 1, RING-type E3 ubiquitin ligase 310			5			Os05g0596500	LOC_Os05g51780.1				GO:0008270 - zinc ion binding		
11763	_	OsRFPH2-2, OsRING323, RING323	_	RING finger protein OsRFPH2-2, RING-H2 protein 2, RING-type E3 ubiquitin ligase 323			2	LOC_Os02g45390.	 Tolerance and resistance - Stress tolerance	Os02g0676500	LOC_Os02g45390.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11764	_	OsRFPH2-3, OsRING217, RING217	_	RING finger protein OsRFPH2-3, RING-H2 protein 3, RING-type E3 ubiquitin ligase 217			1	LOC_Os01g74040.	 Tolerance and resistance - Stress tolerance	Os01g0972000	LOC_Os01g74040.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait, TO:0000168 - abiotic stress trait	
11765	_	OsRFPH2-4, OsRING91, RING91	_	RING finger protein OsRFPH2-4, RING-H2 protein 4, RING-type E3 ubiquitin ligase 91			1			Os01g0311100	LOC_Os01g20910.1						
11766	_	OsRFPH2-5, DLN133, OsDLN133, OsRING36, RING36	_	RING finger protein OsRFPH2-5, RING-H2 protein 5, DLN repressor 133, DLN motif protein 133, RING-type E3 ubiquitin ligase 36			5		 Tolerance and resistance - Stress tolerance	Os05g0179000	LOC_Os05g08610.4, LOC_Os05g08610.3, LOC_Os05g08610.2, LOC_Os05g08610.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait, TO:0000161 - radiation response trait	
11767	_	OsRFPH2-6, OsRING47, RING47	_	RING finger protein OsRFPH2-6, RING-H2 protein 6, RING-type E3 ubiquitin ligase 47			4	LOC_Os04g49160.	 Tolerance and resistance - Stress tolerance	Os04g0580800	LOC_Os04g49160.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait	
11768	_	OsRFPH2-7, OsRING296, RING296	_	RING finger protein OsRFPH2-7, RING-H2 protein 7, RING-type E3 ubiquitin ligase 296			6	LOC_Os06g12560.	 Tolerance and resistance - Stress tolerance	Os06g0231600	LOC_Os06g12560.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait	
11769	RFPH2-8	OsRFPH2-8, OsRING68, RING68	RING-H2 PROTEIN 8	RING finger protein OsRFPH2-8, RING-H2 protein 8, RING-type E3 ubiquitin ligase 68	RING-H2 PROTEIN 8		1	a gene in rice zygotes with paternal allele-dependent expression.	 Tolerance and resistance - Stress tolerance	Os01g0213400	LOC_Os01g11520.1				GO:0008270 - zinc ion binding		
11770	RFPH2-9	OsRFPH2-9, OsRING129, RING129, OsvWA8, vWA8	RING-H2 PROTEIN 9	RING finger protein OsRFPH2-9, RING-H2 protein 9, RING-type E3 ubiquitin ligase 129, von Willebrand factor A8	RING-H2 PROTEIN 9		3	GO:1903842: response to arsenite ion.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0142500	LOC_Os03g04890.1				GO:0009735 - response to cytokinin stimulus, GO:0005886 - plasma membrane, GO:0009751 - response to salicylic acid stimulus, GO:0009645 - response to low light intensity stimulus, GO:0010288 - response to lead ion, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0008270 - zinc ion binding	TO:0000203 - bacterial leaf streak disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000460 - light intensity sensitivity, TO:0000074 - blast disease, TO:0000167 - cytokinin sensitivity	
11771	RFI2	OsRFPH2-10, RFPH2-10, OsRFI2, UCIP1, OsUCIP1, OsRING344, RING344	RED AND FAR-RED INSENSITIVE 2	RING finger protein OsRFPH2-10, RING-H2 protein 10, RING-H2 Finger E3 Ubiquitin Ligase 10, OsUBC26 Interact Protein 1, RING-type E3 ubiquitin ligase 344			8	high sequence similarity to Arabidopsis RED AND FAR-RED INSENSITIVE 2 (RFI2).	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance	Os08g0539300	LOC_Os08g42640.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0051607 - defense response to virus, GO:0008270 - zinc ion binding	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000148 - viral disease resistance	
11772	_	OsRFPH2-11, OsHIR1, OsRING123, RING123	_	RING finger protein OsRFPH2-11, RING-H2 protein 11, heavy metal induced RING E3 ligase 1, RING-type E3 ubiquitin ligase 123			10	TO:0006054: arsenic concentration. TO:0006059: cadmium concentration.	 Tolerance and resistance - Stress tolerance	Os10g0406200	LOC_Os10g26610.1, LOC_Os10g26610.2				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11773	_	OsRFPH2-12, OsRING176, RING176	_	RING finger protein OsRFPH2-12, RING-H2 protein 12, RING-type E3 ubiquitin ligase 176			1		 Tolerance and resistance - Stress tolerance	Os01g0802000	LOC_Os01g58780.1				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11774	_	OsRFPH2-13	_	RING finger protein OsRFPH2-13, RING-H2 protein 13			7	LOC_Os07g22840.	 Tolerance and resistance - Stress tolerance	Os07g0411200	LOC_Os07g22840.1				GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11775	_	OsRFPH2-14, OsRING130, RING130	_	RING finger protein OsRFPH2-14, RING-H2 protein 14, RING-type E3 ubiquitin ligase 130			4		 Tolerance and resistance - Stress tolerance	Os04g0571200	LOC_Os04g48260.1				GO:0008270 - zinc ion binding		
11776	RFPH2-15	OsRFPH2-15, OsRING316, RING316, OsvWA6, vWA6	RING-H2 PROTEIN 15	RING finger protein OsRFPH2-15, RING-H2 protein 15, RING-type E3 ubiquitin ligase 316, von Willebrand factor A6	RING-H2 PROTEIN 15		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0619600	LOC_Os02g40664.1				GO:0010332 - response to gamma radiation, GO:0042742 - defense response to bacterium, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000161 - radiation response trait, TO:0000255 - sheath blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance	
11777	_	OsRFPH2-16, OsGIRP1, OsRING32, RING32	_	RING finger protein OsRFPH2-16, RING-H2 protein 16, gamma rays-induced RING finger protein1, gamma rays-induced RING finger protein 1, RING-type E3 ubiquitin ligase 32			11	LOC_Os11g41140.	 Tolerance and resistance - Stress tolerance	Os11g0629300	LOC_Os11g41140.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait	
11778	_	OsRFPH2-17, OsRING358, RING358	_	RING finger protein OsRFPH2-17, RING-H2 protein 17, RING-type E3 ubiquitin ligase 358			7			Os07g0479100	LOC_Os07g29600.1, LOC_Os07g29600.2				GO:0009416 - response to light stimulus, GO:0008270 - zinc ion binding, GO:0009299 - mRNA transcription, GO:0009535 - chloroplast thylakoid membrane, GO:0010200 - response to chitin, GO:0031351 - integral to plastid membrane		
11779	_	OsRFPH2-18, OsRING175, RING175	_	RING finger protein OsRFPH2-18, RING-H2 protein 18, RING-type E3 ubiquitin ligase 175			12	LOC_Os12g39110.	 Tolerance and resistance - Stress tolerance	Os12g0580700	LOC_Os12g39110.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation	TO:0000168 - abiotic stress trait, TO:0000161 - radiation response trait	
11780	_	OsRFPH2-19, OsRING373, RING373	_	RING finger protein OsRFPH2-19, RING-H2 protein 19, RING-type E3 ubiquitin ligase 373			3	LOC_Os03g57500. RHF homolog in Wang et al. 2013.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0788800	LOC_Os03g57500.1				GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0009561 - megagametogenesis, GO:0051603 - proteolysis involved in cellular protein catabolic process, GO:0055046 - microgametogenesis, GO:0051726 - regulation of cell cycle	TO:0000350 - cms-hl type	
11781	_	OsRFPH2-20, OsRING144, RING144	_	RING finger protein OsRFPH2-20, RING-H2 protein 20, RING-type E3 ubiquitin ligase 144			5			Os05g0550000	LOC_Os05g47670.1						
11782	_	OsRFPH2-21, OsRING247, RING247	_	RING finger protein OsRFPH2-21, RING-H2 protein 21, RING-type E3 ubiquitin ligase 247			6			Os06g0101300	LOC_Os06g01200.1				GO:0008270 - zinc ion binding		
11783	_	OsRFPH2-22, OsRING38, RING38	_	RING finger protein OsRFPH2-22, RING-H2 protein 22, RING-type E3 ubiquitin ligase 38			2		 Tolerance and resistance - Stress tolerance	Os02g0787500	LOC_Os02g54624.1				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11784	_	OsRFPH2-23, OsRING146, RING146	_	RING finger protein OsRFPH2-23, RING-H2 protein 23, RING-type E3 ubiquitin ligase 146			1		 Tolerance and resistance - Stress tolerance	Os01g0692700	LOC_Os01g49770.1, LOC_Os01g49770.2				GO:0008270 - zinc ion binding		
11785	HRZ2	OsRFPH2-24, OsHRZ2, OsRING150, RING150, CLG1, OsCLG1	HAEMERYTHRIN MOTIF-CONTAINING RING- AND ZINC-FINGER PROTEIN 2	RING finger protein OsRFPH2-24, RING-H2 protein 24, Haemerythrin motif-containing Really Interesting New Gene (RING)-and Zinc-finger protein 2, Haemerythrin motif-containing RING- and Zinc-finger protein 2, RING-type E3 ubiquitin ligase 150, CHANG LI GENG 1	HAEMERYTHRIN MOTIF-CONTAINING RING- AND ZINC-FINGER PROTEIN 2	hrz2-1	5	OsHRZ2 negatively regulates responses to Fe deficiency. a RING ubiquitin ligase. a close homolog of Arabidopsis BTS. an Arabidopsis thaliana BRUTUS (BTS) ortholog. putative iron-sensing factor. putative Fe and oxygen/redox state sensor. iron-binding ubiquitin ligase. GO:1901967: negative regulation of cellular response to iron ion starvation. GO:1990641: response to iron ion starvation. TO:0020089: iron content trait. TO:0006049: iron concentration. TO:0020090: zinc content trait. TO:0006053: zinc concentration.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os05g0551000	LOC_Os05g47780.1				GO:0008270 - zinc ion binding, GO:0042594 - response to starvation, GO:0055072 - iron ion homeostasis, GO:0005506 - iron ion binding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010106 - cellular response to iron ion starvation	TO:0000397 - grain size, TO:0000224 - iron sensitivity	PO:0009005 - root , PO:0009006 - shoot system 
11786	RFPHC-1	OsRFPHC-1, OsNLA2, NLA2, OsNLA2.1, OsNLA2.2, OsRING348, RING348	RING-HC PROTEIN 1	RING finger protein OsRFPHC-1, RING-HC protein 1, RING-type E3 ubiquitin ligase 348	RING-HC PROTEIN 1		3	Q7XZZ3. one of the two orthologs of Arabidopsis NLA (AtNLA) in rice.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0650900	LOC_Os03g44810.4, LOC_Os03g44810.3, LOC_Os03g44810.2, LOC_Os03g44810.1				GO:0008270 - zinc ion binding, GO:0010332 - response to gamma radiation, GO:0016567 - protein ubiquitination, GO:0016874 - ligase activity	TO:0000161 - radiation response trait	
11787	RFPHC-2	OsRFPHC-2, OsRING87, RING87, OsvWA25, vWA25, OsRGLG4, RGLG4	RING-HC PROTEIN 2	RING finger protein OsRFPHC-2, RING-HC protein 2, RING-type E3 ubiquitin ligase 87, von Willebrand factor A25, RING DOMAIN LIGASE4, RING DOMAIN LIGASE 4	RING-HC PROTEIN 2		8		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0135400	LOC_Os08g04130.1, LOC_Os08g04130.2, LOC_Os08g04130.3				GO:0002238 - response to molecule of fungal origin, GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding, GO:0005634 - nucleus		
11788	_	OsRFPHC-4, OsRING205, RING205	_	RING finger protein OsRFPHC-4, RING-HC protein 4, RING-type E3 ubiquitin ligase 205			7	LOC_Os07g46700.	 Tolerance and resistance - Stress tolerance	Os07g0661600	LOC_Os07g46700.1, LOC_Os07g46700.2, LOC_Os07g46700.3, LOC_Os07g46700.4				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait, TO:0000168 - abiotic stress trait	
11789	_	OsRFPHC-5, RFPHC-5, OsRING404, RING404	_	RING finger protein OsRFPHC-5, RING-HC protein 5, RING-type E3 ubiquitin ligase 404			9		 Tolerance and resistance - Stress tolerance	 Os09g0512132/Os09g0512200/Os09g0512450	LOC_Os09g33740.1				GO:0003824 - catalytic activity		
11790	_	OsRFPHC-6, OsRING99, RING99	_	RING finger protein OsRFPHC-6, RING-HC protein 6, RING-type E3 ubiquitin ligase 99			7			Os07g0626900	LOC_Os07g43380.1				GO:0008270 - zinc ion binding		
11791	_	OsRFPHC-8, OsRING114, RING114	_	RING finger protein OsRFPHC-8, RING-HC protein 8, RING-type E3 ubiquitin ligase 114			5	LOC_Os05g33000.	 Tolerance and resistance - Stress tolerance	Os05g0397650	LOC_Os05g33000.1, LOC_Os05g33000.2				GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
11792	RFPHC9	OsRFPHC-9, RFPHC-9, RIP4, OsRIP4, OsRING75, RING75	RING-HC PROTEIN 9	RING finger protein OsRFPHC-9, RING-HC protein 9, RMD Interacting Protein 4, RING-type E3 ubiquitin ligase 75	RING-HC PROTEIN 9	rip4	2	SIAH-type E3 ligase. The sextuple rip1-6 mutant displayed dwarf height, wrinkled seeds, wider leaves, defective microfilaments and increased flag leaf angles (Chang et al. 2022).	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Biochemical character,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape	Os02g0128800	LOC_Os02g03620.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0007275 - multicellular organismal development, GO:0005737 - cytoplasm, GO:0004842 - ubiquitin-protein ligase activity, GO:0007015 - actin filament organization, GO:0048364 - root development	TO:0000718 - wrinkled seed, TO:0002710 - root shape, TO:0000124 - flag leaf angle, TO:0000207 - plant height, TO:0000656 - root development trait, TO:0000370 - leaf width	PO:0007520 - root development stage 
11793	SIP13 	OsRFPHC-10, RFPHC-10, OsSIP13, OsRING413, RING413	SKIPA-INTERACTING PROTEIN 13	RING finger protein OsRFPHC-10, RING-HC protein 10, SKIP interacting protein 13, SKIPa-interacting protein 13, SKIPa-interacting protein 13, RING-type E3 ubiquitin ligase 413	SKIPA-INTERACTING PROTEIN 13		10	EU368703. LOC_Os10g36880. 	 Tolerance and resistance - Stress tolerance	Os10g0512800	LOC_Os10g36880.1				GO:0007049 - cell cycle, GO:0009531 - secondary cell wall, GO:0005856 - cytoskeleton		PO:0009047 - stem 
11794	_	OsRFPHC-11, OsRING376, RING376	_	RING finger protein OsRFPHC-11, RING-HC protein 11, RING-type E3 ubiquitin ligase 376			5			Os05g0102600	LOC_Os05g01230.1				GO:0010385 - double-stranded methylated DNA binding, GO:0010428 - methyl-CpNpG binding, GO:0010429 - methyl-CpNpN binding, GO:0031508 - centromeric heterochromatin formation, GO:0032776 - DNA methylation on cytosine, GO:0051301 - cell division, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0008327 - methyl-CpG binding, GO:0010228 - vegetative to reproductive phase transition, GO:0010369 - chromocenter		
11795	_	OsRFPHC-12, RFPHC-12, DLN116, OsDLN116, OsRING385, RING385	_	RING finger protein OsRFPHC-12, RING-HC protein 12, DLN repressor 116, DLN motif protein 116, RING-type E3 ubiquitin ligase 385			4		 Tolerance and resistance - Stress tolerance	Os04g0512400	LOC_Os04g43300.1				GO:0008270 - zinc ion binding		
11796	NLA1	OsRFPHC-13, OsNLA, NLA, OsNLA1, OsNLA1.1, OsNLA1.2, OsNLA1.3, OsRING269, RING269	NITROGEN LIMITATION ADAPTATION 1	RING finger protein OsRFPHC-13, RING-HC protein 13, nitrogen limitation adaptation, RING-type E3 ubiquitin ligase 269		osnla1, osnla1-1, osnla1-2, Osnla1-3, osnla1-4	7	Q7XI73. a rice homolog of AtNLA. one of the two orthologs of Arabidopsis NLA (AtNLA) in rice. RING-type E3 ubiquitin-ligase. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0673200	LOC_Os07g47590.3, LOC_Os07g47590.2, LOC_Os07g47590.1				GO:0009626 - plant-type hypersensitive response, GO:0009555 - pollen development, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0080021 - response to benzoic acid stimulus, GO:0042742 - defense response to bacterium, GO:0016874 - ligase activity, GO:0016567 - protein ubiquitination, GO:0010337 - regulation of salicylic acid metabolic process, GO:0010167 - response to nitrate, GO:0009751 - response to salicylic acid stimulus, GO:0009697 - salicylic acid biosynthetic process, GO:0009627 - systemic acquired resistance, GO:0048767 - root hair elongation, GO:0009269 - response to desiccation, GO:0055081 - anion homeostasis, GO:0009414 - response to water deprivation, GO:0055062 - phosphate ion homeostasis, GO:0010966 - regulation of phosphate transport	TO:0000421 - pollen fertility, TO:0002665 - root hair length, TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity	PO:0001007 - pollen development stage , PO:0020105 - ligule , PO:0025034 - leaf , PO:0009066 - anther , PO:0025281 - pollen , PO:0020104 - leaf sheath , PO:0009005 - root 
11797	RFPHC14	OsRFPHC-14, RFPHC-14, OsSTA9, RIP3, OsRIP3, OsRING79, RING79	RING-HC PROTEIN 14	RING finger protein OsRFPHC-14, RING-HC protein 14, RMD Interacting Protein 3, RING-type E3 ubiquitin ligase 79	RING-HC PROTEIN 14	rip3	1	a mature anther-preferentially expressed gene. SIAH-type E3 ligase. The sextuple rip1-6 mutant displayed dwarf height, wrinkled seeds, wider leaves, defective microfilaments and increased flag leaf angles (Chang et al. 2022).	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Morphological traits - Grain shape,  Vegetative organ - Root,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0234900	LOC_Os01g13370.1				GO:0007275 - multicellular organismal development, GO:0005737 - cytoplasm, GO:0004842 - ubiquitin-protein ligase activity, GO:0005739 - mitochondrion, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0007015 - actin filament organization, GO:0048364 - root development	TO:0000656 - root development trait, TO:0000207 - plant height, TO:0000124 - flag leaf angle, TO:0000168 - abiotic stress trait, TO:0002710 - root shape, TO:0000370 - leaf width, TO:0000718 - wrinkled seed	PO:0009066 - anther , PO:0007520 - root development stage 
11798	_	OsRFPHC-15, OsRING186, RING186	_	RING finger protein OsRFPHC-15, RING-HC protein 15, RING-type E3 ubiquitin ligase 186			5			Os05g0275700	LOC_Os05g19480.1				GO:0005777 - peroxisome, GO:0008270 - zinc ion binding, GO:0006635 - fatty acid beta-oxidation, GO:0009640 - photomorphogenesis, GO:0016558 - protein import into peroxisome matrix, GO:0005829 - cytosol		
11799	_	OsRFPHC-16, OsRING322, RING322	_	RING finger protein OsRFPHC-16, RING-HC protein 16, RING-type E3 ubiquitin ligase 322			9	LOC_Os09g39690.	 Tolerance and resistance - Stress tolerance	Os09g0570500	LOC_Os09g39690.1				GO:0010332 - response to gamma radiation, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait	
11800	RFPV1	OsRFPV-1, OsRING102, RING102	_	RING finger protein OsRFPV-1, RING-V protein 1, RING-type E3 ubiquitin ligase 102			1		 Tolerance and resistance - Stress tolerance	Os01g0303600	LOC_Os01g19800.1				GO:0010332 - response to gamma radiation, GO:0030912 - response to deep water, GO:0008270 - zinc ion binding	TO:0000161 - radiation response trait, TO:0000524 - submergence tolerance	
11801	_	OsRFPV-2, OsRING231, RING231	_	RING finger protein OsRFPV-2, RING-V protein 2, RING-type E3 ubiquitin ligase 231			5		 Tolerance and resistance - Stress tolerance	Os05g0355300	LOC_Os05g28730.1				GO:0008270 - zinc ion binding	TO:0000168 - abiotic stress trait	
11802	_	OsRFPV-3, OsRING185, RING185	_	RING finger protein OsRFPV-3, RING-V protein 3, RING-type E3 ubiquitin ligase 185			1			Os01g0850200	LOC_Os01g63150.1				GO:0008270 - zinc ion binding		
11803	_	OsRFPV-4, OsRING136, RING136	_	RING finger protein OsRFPV-4, RING-V protein 4, RING-type E3 ubiquitin ligase 136			1			Os01g0610700	LOC_Os01g42500.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
11804	_	OsRFPV-5, OsRING235, RING235	_	RING finger protein OsRFPV-5, RING-V protein 5, RING-type E3 ubiquitin ligase 235			6			Os06g0677300	LOC_Os06g46366.1				GO:0008270 - zinc ion binding		
11805	RFPV6	OsRFPV-6, OsRFPv6, OsRING135, RING135	RING FINGER PROTEIN V6	RING finger protein OsRFPV-6, RING-V protein 6, RING-type E3 ubiquitin ligase 135, RING finger protein v6	RING FINGER PROTEIN V6		2	GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os02g0132300	LOC_Os02g03950.1, LOC_Os02g03950.2, LOC_Os02g03950.3, LOC_Os02g03950.4, LOC_Os02g03950.5				GO:0010332 - response to gamma radiation, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding	TO:0000527 - sodium uptake, TO:0000514 - potassium uptake, TO:0000161 - radiation response trait, TO:0000609 - potassium content, TO:0000608 - sodium content, TO:0000605 - hydrogen peroxide content, TO:0001016 - relative chlorophyll content, TO:0006001 - salt tolerance, TO:0000340 - total soluble sugar content, TO:0000276 - drought tolerance, TO:0006002 - proline content, TO:0000525 - sodium to potassium content ratio	
11806	TTL1	OsRFPV-7, RFPV-7, OsRFPV7, RFPV7, OsRING200, RING200, OsTTL1	THERMO-TOLERANCE AND GRAIN LENGTH 1	RING finger protein OsRFPV-7, RING-V protein 7, RING-type E3 ubiquitin ligase 200, RING finger protein V-7, Thermo-Tolerance and grain Length 1	RING FINGER PROTEIN V-7	ttl1	1		 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0894600	LOC_Os01g66970.1, LOC_Os01g66970.2, LOC_Os01g66970.3, LOC_Os01g66970.4				GO:0009408 - response to heat, GO:0010332 - response to gamma radiation, GO:0008285 - negative regulation of cell proliferation, GO:0051782 - negative regulation of cell division, GO:0008270 - zinc ion binding, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000397 - grain size, TO:0000449 - grain yield per plant, TO:0000259 - heat tolerance, TO:0000161 - radiation response trait, TO:0000382 - 1000-seed weight, TO:0000590 - grain weight	
11807	NCED1	OsNCED1, OsCCD4a, CCD4a	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1	"9-cis-epoxycarotenoid dioxygenase 1, carotenoid-cleavage dioxygenase 4a, \"zeaxanthin 7, 8(7',8')-cleavage dioxygenase, chromoplastic\""	9-CIS-EPOXYCAROTENOID DIOXYGENASE 1		2	AY838897. AB110203. a neoxanthin cleavage enzyme-like protein. 	 Tolerance and resistance - Disease resistance,  Coloration - Others,  Tolerance and resistance - Insect resistance,  Biochemical character,  Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance	Os02g0704000 	LOC_Os02g47510.1				GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0009725 - response to hormone stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0010287 - plastoglobule, GO:0009753 - response to jasmonic acid stimulus, GO:0051213 - dioxygenase activity, GO:0009688 - abscisic acid biosynthetic process, GO:0002213 - defense response to insect, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009413 - response to flooding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000114 - flooding related trait, TO:0000175 - bacterial blight disease resistance, TO:0000289 - carotene content, TO:0002667 - abscisic acid content, TO:0000095 - osmotic response sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000496 - carotenoid content, TO:0000615 - abscisic acid sensitivity, TO:0000301 - xanthophyll content	PO:0008037 - seedling , PO:0007131 - seedling development stage , PO:0009049 - inflorescence , PO:0025034 - leaf 
11808	NCED2	OsNCED2, OsNced2, OsCCD4b, CCD4b, OsCCD4c, CCD4c	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2	9-cis-epoxycarotenoid dioxygenase 2, carotenoid-cleavage dioxygenase 4b	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2	osnced2, osnced2-1, osnced2-2	12	AY838898. Q5MBR6. OsCCD4c in Dai et al. 2024. GO:2000033: regulation of seed dormancy process. 	 Coloration - Chlorophyll,  Seed - Physiological traits - Dormancy,  Vegetative organ - Leaf,  Biochemical character,  Vegetative organ - Culm,  Coloration - Others,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os12g0435200 	LOC_Os12g24800.1				GO:0009688 - abscisic acid biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0009409 - response to cold, GO:0009725 - response to hormone stimulus, GO:0046872 - metal ion binding, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0010162 - seed dormancy, GO:0010231 - maintenance of seed dormancy, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0009414 - response to water deprivation, GO:0010287 - plastoglobule, GO:0006979 - response to oxidative stress, GO:0006970 - response to osmotic stress, GO:0009507 - chloroplast, GO:0043289 - apocarotenoid biosynthetic process	TO:0000401 - plant growth hormone sensitivity, TO:0000301 - xanthophyll content, TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000357 - growth and development trait, TO:0000227 - root length, TO:0000207 - plant height, TO:0000576 - stem length, TO:0000495 - chlorophyll content, TO:0000095 - osmotic response sensitivity, TO:0000253 - seed dormancy, TO:0000289 - carotene content, TO:0000303 - cold tolerance, TO:0000496 - carotenoid content, TO:0000326 - leaf color	PO:0009010 - seed , PO:0007010 - whole plant fruit ripening stage , PO:0008037 - seedling , PO:0009049 - inflorescence 
11809	PIN4	OsPIN4	PIN PROTEIN 4		PIN PROTEIN 4												
11810	_	OsWIP6	_	C2H2-type zinc-finger transcription factor OsWIP6			9	A. thaliana WIP family transcription factor homolog.	 Reproductive organ - Pollination, fertilization, fertility,  Other	Os09g0485500	LOC_Os09g31140.1						
11811	CAP1		COLLAPSED ABNORMAL POLLEN1		ARABINOSE-LIKE PROTEIN	cap1	2		 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0141300	LOC_Os02g04840.1						
11812	PHO1	Pho1, OsPho1, OsPHOL, PHOL, OsPHOI, PHOI	STARCH PHOSPHORYLASE 1	Starch phosphorylase 1, plastidial starch phosphorylase1, plastidial starch phosphorylase 1, Plastidic a-1, 4-glucan phosphorylase 2, starch phosphorylase L	STARCH PHOSPHORYLASE 1	pho1, pho1-1, pho1-2	3	AB441692, AB441693, AB441694, AF327055. D23280.	 Biochemical character,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os03g0758100	LOC_Os03g55090.1				GO:0009312 - oligosaccharide biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0009570 - chloroplast stroma, GO:0005975 - carbohydrate metabolic process, GO:0008184 - glycogen phosphorylase activity, GO:0009414 - response to water deprivation, GO:0010581 - regulation of starch biosynthetic process, GO:0009960 - endosperm development, GO:0009266 - response to temperature stimulus, GO:0019252 - starch biosynthetic process	TO:0002658 - starch grain synthesis	PO:0020104 - leaf sheath , PO:0009066 - anther , PO:0009047 - stem , PO:0009089 - endosperm , PO:0004006 - mesophyll cell , PO:0025034 - leaf 
11813	PHO2	Pho2, OsPho2, OsPHOH, PHOH	STARCH PHOSPHORYLASE 2	Starch phosphorylase 2, plastidial starch phosphorylase2, plastidial starch phosphorylase 2	STARCH PHOSPHORYLASE 2		1	cytosolic starch phosphorylase	 Biochemical character	Os01g0851700	LOC_Os01g63270.1, LOC_Os01g63270.2				GO:0009507 - chloroplast, GO:0030170 - pyridoxal phosphate binding, GO:0046686 - response to cadmium ion, GO:0005975 - carbohydrate metabolic process, GO:0008184 - glycogen phosphorylase activity, GO:0009414 - response to water deprivation		PO:0025034 - leaf 
11814	-	OsARA1	-	CAP1-related gene			6	NP_001058491		Os06g0702500	LOC_Os06g48940.1						
11815	PIGD2	Pi-GD-2(t), PiGD-2(t)	PYRICULARIA ORYZAE RESISTANCE GD2	Pyricularia oryzae resistance GD2			10	Original line is Sanhuangzhan 2 (Indica). mapped on chromosome 10, 3.9 cM from a nucleotide binding site leucine-rich repeater (NBS-LRR) marker (r16).	 Tolerance and resistance - Disease resistance			GR:0060657			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000480 - nutrient sensitivity, TO:0000477 - panicle blast disease resistance	
11816	PIG	Pi-g(t)	PYRICULARIA ORYZAE RESISTANCE G	Pyricularia oryzae resistance G			2	Original line is  Guangchangzhan (Indica). Map position (142.0-154.1 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000480 - nutrient sensitivity, TO:0000468 - leaf blast disease resistance	
11817	PIGD3	Pi-GD-3(t), PiGD-3(t)	PYRICULARIA ORYZAE RESISTANCE GD3	Pyricularia oryzae resistance GD3			12	Original line is Sanhuangzhan 2 (Indica). mapped on chromosome 12, 4.8 cM from the SSR marker RM179.	 Tolerance and resistance - Disease resistance			GR:0060657		55.8	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000480 - nutrient sensitivity, TO:0000477 - panicle blast disease resistance	
11818	DUR3	OsDUR3	DEGRADATION OF UREA 3	high-affinity urea transporter OsDUR3		osdur3, osdur3-dT, dur3-1, dur3-2	10	an ortholog of AtDUR3. Q7XBS0. AY463691, AU056606.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Biochemical character	Os10g0580400	LOC_Os10g42960.1				GO:0048573 - photoperiodism, flowering, GO:0015293 - symporter activity, GO:0006995 - cellular response to nitrogen starvation, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0015204 - urea transmembrane transporter activity	TO:0000371 - yield trait, TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0000576 - stem length, TO:0000011 - nitrogen sensitivity	PO:0000034 - vascular system , PO:0020139 - leaf midvein 
11819	_		_	OsUrease, Urease				HM369060. J023004J18, AK069176.	 Biochemical character						GO:0016151 - nickel ion binding, GO:0009039 - urease activity, GO:0043419 - urea catabolic process		
11820	_	UreD, OsUreD	_	urease accessory protein UreD				HM369057.							GO:0016151 - nickel ion binding, GO:0006807 - nitrogen compound metabolic process		
11821	_	UreF, OsUreF	_	urease accessory protein UreF				HM369058.							GO:0006807 - nitrogen compound metabolic process, GO:0048554 - positive regulation of metalloenzyme activity, GO:0016151 - nickel ion binding		
11822	_	UreG, OsUreG	_	urease accessory protein UreG			5	HM369059.		Os05g0565200	LOC_Os05g49050.1				GO:0005737 - cytoplasm, GO:0016151 - nickel ion binding, GO:0016530 - metallochaperone activity, GO:0048554 - positive regulation of metalloenzyme activity, GO:0016020 - membrane, GO:0003924 - GTPase activity, GO:0005524 - ATP binding		
11823	KN	OsKN, OsSYP111, SYP111	KNOLLE	Syntaxin-related protein KNOLLE, OsKNOLLE, Syntaxin of Plants 111, OsKNOLLE2, KNOLLE2	KNOLLE		3	SNARE superfamily. OsKNOLLE2 in Ma et al. 2009, Zhou & Tang 2018.	 Tolerance and resistance - Stress tolerance	Os03g0736500	LOC_Os03g52650.1				GO:0016192 - vesicle-mediated transport, GO:0009504 - cell plate, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0009524 - phragmoplast, GO:0005737 - cytoplasm, GO:0012505 - endomembrane system		
11824	_	OsZnI	_	Cys3/His1-type zinc finger protein ZnI				EU503083.	 Tolerance and resistance - Stress tolerance						GO:0006950 - response to stress		
11825	MIR167A	miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p, OsmiR167a	MICRORNA167A	MICRORNA167a, osa-miRNA167a	_		12	 miRBASE accession: MI0000676. LM380903 LM379163. MicroRNA167 (miR167) was shown to cleave auxinresponsive factor 8 (ARF8) mRNA. Target genes: ARF and ARF6 (Yang et al. 2006). the promising target genes: OsARF12, OsARF17 and OsARF25 (Li et al. 2020). GO:2000012: regulation of auxin polar transport.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance						GO:0009630 - gravitropism, GO:0006379 - mRNA cleavage, GO:0009734 - auxin mediated signaling pathway, GO:0035068 - micro-ribonucleoprotein complex, GO:0042742 - defense response to bacterium, GO:0009926 - auxin polar transport, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA	TO:0000175 - bacterial blight disease resistance, TO:0000429 - salt sensitivity, TO:0000590 - grain weight, TO:0000567 - tiller angle, TO:0000163 - auxin sensitivity, TO:0000734 - grain length, TO:0002693 - gravity response trait, TO:0000207 - plant height	
11826	MIR156A	miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a	MICRORNA156A	micro RNA 156a, microRNA156a, osa-miRNA156a	_		1	miRBASE accession: MI0000653. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM379141. Targets: Os01g0922600, Os02g0139400, Os11g0496600 (Kansal et al. 2021).	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0019722 - calcium-mediated signaling, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
11827	MIR160A	miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a	MICRORNA160A	MICRORNA160a, osa-miRNA160a	_		2	miRBASE accession: MI0000663.LM383048 LM379150	 Tolerance and resistance - Disease resistance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0042742 - defense response to bacterium, GO:0009733 - response to auxin stimulus, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000163 - auxin sensitivity, TO:0000175 - bacterial blight disease resistance	
11828	MIR162A	miR162a, osa-miR162a, osa-MIR162a, OsMIR162a	MICRORNA162A	MICRORNA162a, osa-miRNA162a	_		2	miRBASE accession: MI0000667.LM379154	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Other						GO:0046686 - response to cadmium ion, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000449 - grain yield per plant, TO:0000371 - yield trait, TO:0000074 - blast disease, TO:0000455 - seed set percent, TO:0000605 - hydrogen peroxide content	
11829	MIR164A	miR164a, osa-miR164a	MICRORNA164A	MICRORNA164a, osa-miRNA164a	_		7	miRBASE accession: MI0000668. HM139156-HM139197 (O. sativa, O. rufipogon). LM379155. authentic target genes of miR164a: OsNAC60 (LOC_Os12g41680), OsNAC11 (LOC_Os06g46270).	 Tolerance and resistance - Disease resistance,  Other						GO:0042742 - defense response to bacterium, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
11830	MIR166A	miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p	MICRORNA166A	MICRORNA166a, osa-miRNA166a	_		10	miRBASE accession: MI0000670. HM139331-HM139339.LM379157 LM383052	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
11831	MIR169	miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a	MICRORNA169	MICRORNA169, osa-miRNA169, MICRORNA169a, osa-miRNA169a	_		1	miRBASE accession: MI0000679. LM379166. HM139568. predicted target: Os03g0738400.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0006808 - regulation of nitrogen utilization, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000011 - nitrogen sensitivity	
11832	MIR171	miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a	MICRORNA171	osa-miRNA171, MICRORNA171a, osa-miRNA171a	_		6	miRBASE accession: MI0000680. target gene(s): GRAS transcription factors. LM379167.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity	
11833	MIR162B	miR162b, osa-miR162b, osa-MIR162b	MICRORNA162B	MICRORNA162b, osa-miRNA162b	_		4	miRBASE accession: MI0001102. AY551224. LM379315. confirmed target: OsTRE1 Os10g0521000).	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
11834	MIR167B	miR167b, osa-miR167b	MICRORNA167B	MICRORNA167b, osa-miRNA167b	_		3	miRBASE accession: MI0000677. target genes: ARF6 and ARF8 (Yang et al. 2006).LM379164	 Other,  Tolerance and resistance - Stress tolerance						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000429 - salt sensitivity	
11835	MIR167C	miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p	MICRORNA167C	MICRORNA167c, osa-miRNA167c	_		3	miRBASE accession: MI0000678. LM383057 LM379165. target gene: NBSGO35 (LOC_Os11g44580).	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease	
11836	MIR167E	miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p	MICRORNA167E	MICRORNA167e	_		2	miRBASE accession: MI0001110. LM383068 LM379322	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000074 - blast disease	
11837	MIR167F	miR167f, osa-miR167f, osa-miRNA167f	MICRORNA167F	MICRORNA167f, osa-miRNA167f	_		10	miRBASE accession: MI0001111. AY551235.LM379323	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0009409 - response to cold	TO:0000074 - blast disease, TO:0000429 - salt sensitivity, TO:0000303 - cold tolerance	
11838	MIR167G	miR167g, osa-miR167g, osa-miRNA167g	MICRORNA167G	MICRORNA167g, osa-miRNA167g	_		3	miRBASE accession: MI0001112. AY551236.LM379324	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex	TO:0000303 - cold tolerance, TO:0000074 - blast disease	
11839	MIR167H	miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p	MICRORNA167H	MICRORNA167h, osa-miRNA167h	_		12	miRBASE accession: MI0001113. LM383069 LM379325. Targets: Os02g0164900, Os12g0613700, Os06g0677800, Os07g0522600  (Kansal et al. 2021).	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0019722 - calcium-mediated signaling, GO:0006379 - mRNA cleavage, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000303 - cold tolerance	
11840	MIR167I	miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p	MICRORNA167I	MICRORNA167i, osa-miRNA167i	_		6	miRBASE accession: MI0001114. AY551238.LM383070 LM379326	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease, TO:0000303 - cold tolerance	
11841	MIR167J	miR167j, osa-miR167j, osa-MIR167j	MICRORNA167J	MICRORNA167j, osa-miRNA167j	_		1	miRBASE accession: MI0001156. AY551237.LM379359	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage	TO:0000303 - cold tolerance, TO:0000074 - blast disease	
11842	MIR168A	miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p, OsMIR168a	MICRORNA168A	MICRORNA168a, osa-miRNA168a	_		2	miRBASE accession: MI0001115. AY551239. LM381727, LM379327. GO:0090559: regulation of membrane permeability.	 Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Physiological traits,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Other						GO:0009737 - response to abscisic acid stimulus, GO:0019722 - calcium-mediated signaling, GO:0009414 - response to water deprivation, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0048573 - photoperiodism, flowering, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000615 - abscisic acid sensitivity, TO:0006032 - panicle size, TO:0002768 - spikelet length, TO:0002759 - grain number, TO:0000447 - filled grain number, TO:0000202 - germination ratio, TO:0000149 - seed width, TO:0000592 - 1000-dehulled grain weight, TO:0000146 - seed length, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000657 - spikelet anatomy and morphology trait, TO:0000391 - seed size, TO:0000345 - seed viability, TO:0000074 - blast disease, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000152 - panicle number, TO:0000346 - tiller number	
11843	LC2	OsLC2, OsVIL2, VIL2, OsVIL3	LEAF INCLINATION 2	leaf inclination2, Leaf Inclination 2, VIN3-LIKE 2, VERNALIZATION INSENSITIVE 3-LIKE 2, VERNALIZATION INSENSITIVE 3-LIKE 3		lc2, lc2-1, lc2-2, lc2-3, osvil2, osvil2-1, osvil2-2	2	a VIN3-like protein. OsVIL3 in Wang et al. 2013. a possible component of PRC2 complex. Chromatin interacting factor.	 Vegetative organ - Leaf,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os02g0152500	LOC_Os02g05840.1				GO:0009741 - response to brassinosteroid stimulus, GO:2000028 - regulation of photoperiodism, flowering, GO:0009737 - response to abscisic acid stimulus, GO:0051302 - regulation of cell division, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0006032 - panicle size, TO:0000557 - secondary branch number, TO:0000447 - filled grain number, TO:0002616 - flowering time, TO:0000206 - leaf angle, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000137 - days to heading, TO:0000547 - primary branch number	
11844	VIL1	OsVIL1, OsVIL2	VERNALIZATION INSENSITIVE 3-LIKE 1	VIN3-LIKE 1	VERNALIZATION INSENSITIVE 3-LIKE PROTEIN 1	osvil1, osvil1-1, osvil1-2, osvil1-3	12	ABA98812. OsVIL2 in Wang et al. 2013. a possible component of PRC2 complex. homologous to the flowering promoter OsVIL2.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os12g0533500	LOC_Os12g34850.1				GO:0051781 - positive regulation of cell division, GO:0008284 - positive regulation of cell proliferation, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering	TO:0000396 - grain yield, TO:0000639 - seed fertility, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000457 - total biomass yield	
11845	VIL3	OsVIL3, OsVIL4, VIL1	VERNALIZATION INSENSITIVE 3-LIKE 3	VIN3-LIKE 3	VERNALIZATION INSENSITIVE 3-LIKE PROTEIN 3		5	AAT94000. OsVIL4 in Wang et al. 2013. VIL1 in Zhang et al. 2014.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0145400	LOC_Os05g05310.1, LOC_Os05g05310.2				GO:0009908 - flower development		PO:0007615 - flower development stage 
11846	VIL4	OsVIL4, OsVIL1	VERNALIZATION INSENSITIVE 3-LIKE 4	VIN3-LIKE 4	VERNALIZATION INSENSITIVE 3-LIKE PROTEIN 4		8	BAD03519. OsVIL1 in Wang et al. 2013.		Os08g0220600	LOC_Os08g12430.1						
11847	SPX-MFS1	OsSPX-MFS1	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 1	SPX-MFS protein 1, SYG1/PHO81/ XPR1-Major Facility Superfamily1	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 1	mfs1	4	Q0JAW2. OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance. TO:0020102: phosphate content. a putative P transporter.	 Tolerance and resistance - Stress tolerance	Os04g0573000	LOC_Os04g48390.1				GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0042594 - response to starvation, GO:0055085 - transmembrane transport, GO:0006817 - phosphate transport, GO:0000325 - plant-type vacuole	TO:0002661 - seed maturation	
11848	SPX-MFS2 	OsSPX-MFS2	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 2	SPX-MFS protein 2, SYG1/PHO81/ XPR1-Major Facility Superfamily2	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 2		2	Q6EPQ3. OsSPX-MFS1 and OsSPX-MFS2 are both negatively regulated by osa-miR827 abundance. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os02g0678200	LOC_Os02g45520.1, LOC_Os02g45520.2				GO:0016021 - integral to membrane, GO:0000325 - plant-type vacuole, GO:0055085 - transmembrane transport, GO:0006817 - phosphate transport, GO:0005774 - vacuolar membrane	TO:0002661 - seed maturation	
11849	SPX-MFS3	OsSPX-MFS3	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 3	SPX-MFS protein 3, SYG1/PHO81/ XPR1-Major Facility Superfamily3	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 3		6	Q658H5.	 Tolerance and resistance - Stress tolerance	Os06g0129400	LOC_Os06g03860.1, LOC_Os06g03860.2, LOC_Os06g03860.3, LOC_Os06g03860.4				GO:0016021 - integral to membrane, GO:0000325 - plant-type vacuole, GO:0005774 - vacuolar membrane, GO:0055085 - transmembrane transport, GO:0031667 - response to nutrient levels, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
11850	SPX-MFS4	OsSPX-MFS4	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 4	SPX-MFS protein 4, SYG1/PHO81/ XPR1-Major Facility Superfamily4	SYG1/PHO81/ XPR1-MAJOR FACILITY SUPERFAMILY PROTEIN 4		9	B9FMX4.		Os09g0521800	LOC_Os09g34990.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
11853	MIR393B	OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p	MICRORNA393B	MICRORNA393B	_		4	miRBASE accession: MI0001148. LM381728, LM379353. target genes: OsTIR1 (Os05g0150500), OsAFB2 (Os04g0395600). GO:1990110: callus formation. PO:0030104: caryopsis fruit.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Vegetative organ - Root,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other,  Character as QTL - Yield and productivity						GO:0042742 - defense response to bacterium, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0006379 - mRNA cleavage, GO:0009408 - response to heat, GO:0016442 - RNA-induced silencing complex, GO:0010311 - lateral root formation, GO:0046688 - response to copper ion	TO:0000394 - drought related trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000382 - 1000-seed weight, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0000590 - grain weight, TO:0000315 - bacterial disease resistance, TO:0000266 - chalky endosperm, TO:0000428 - callus induction, TO:0000734 - grain length, TO:0000021 - copper sensitivity	
11854	DDM1A	OsDDM1a, DDM1a, DLN225, OsDLN225, CHR746, OsCHR746	DECREASE IN DNA METHYLATION 1A	Decrease in DNA Methylation 1a, Deficient in DNA Methylation 1a, DECREASE IN DNA METHYLATION1a, DLN repressor 225, DLN motif protein 225, chromatin remodeling factor 746	DLN REPRESSOR 225	ddm1a, osddm1a	9	similar to Arabidopsis DDM1. GO:0080188: RNA-directed DNA methylation. GO:0140658: ATP-dependent chromatin remodeler activity.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0442700	LOC_Os09g27060.1				GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0010425 - DNA methylation on cytosine within a CNG sequence, GO:0009651 - response to salt stress, GO:0044030 - regulation of DNA methylation, GO:0008094 - DNA-dependent ATPase activity, GO:0005634 - nucleus, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0006001 - salt tolerance	
11855	DDM1B	OsDDM1b, DDM1b, DDM1, DLN98, OsDLN98, CHR741, OsCHR741	DECREASE IN DNA METHYLATION 1B	Decrease in DNA Methylation 1b, Deficient in DNA Methylation 1b, DECREASE IN DNA METHYLATION1b, DLN repressor 98, DLN motif protein 98, chromatin remodeling factor 741	DLN REPRESSOR 98	ddm1b, osddm1b	3	similar to Arabidopsis DDM1. DDM1 in Li et al. 2017. SWI/SNF chromatin remodeler. GO:0080188: RNA-directed DNA methylation. GO:0140658: ATP-dependent chromatin remodeler activity.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0722400	LOC_Os03g51230.2, LOC_Os03g51230.1				GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0008094 - DNA-dependent ATPase activity, GO:0009414 - response to water deprivation, GO:0010424 - DNA methylation on cytosine within a CG sequence, GO:0010426 - DNA methylation on cytosine within a CHH sequence, GO:0009651 - response to salt stress, GO:0044030 - regulation of DNA methylation, GO:0010425 - DNA methylation on cytosine within a CNG sequence, GO:0005524 - ATP binding, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance	
11856	-	OsRecQ2	-	RecQ-like helicase 2				AB246666.							GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0005622 - intracellular, GO:0006310 - DNA recombination, GO:0003676 - nucleic acid binding		
11859	_	OsFRO7, FRO7, OsFRO1, FRO1	_	ferric reductase oxidase 7	_		4	OsFRO1 in Kabir 2016. LOC_Os04g36720.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0444800	LOC_Os04g36720.1				GO:0000293 - ferric-chelate reductase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast, GO:0046687 - response to chromate, GO:0009767 - photosynthetic electron transport chain, GO:0009416 - response to light stimulus	TO:0000034 - chromium sensitivity, TO:0000615 - abscisic acid sensitivity	
11862	REP1	REP-1, OsREP-1, OsREP1, OsSAG12-1, SAG12-1, OsEnS-21	CYSTEINE ENDOPEPTIDASE REP-1	cysteine endopeptidase REP-1, senescence associated gene 12-1, endosperm-specific gene 21	CYSTEINE ENDOPEPTIDASE REP-1		1	D76415. a Homologue of AtSAG12. cysteine proteinase EP-B 1. EF122459.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0907600	LOC_Os01g67980.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
11863	PI7	Pi7, Pi-7(t), Pi7(t)	PYRICULARIA ORYZAE RESISTANCE 7 				11	Original line is RIL29(Moroberekan(Japonica)). Map position (71.4-84.3 cM). Pi7(t) was bracketed by RG103A and RG16 in chromosome 11. Pi7(t) is tightly linked to Pi1.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
11864	NDART1-A	nDart1-A	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-A	non-autonomous DNA-based active rice transposon 1-A				AB206819.	 Other						GO:0032196 - transposition		
11865	_	MgPIX MT	_	Mg-protoporphyrin IX methyltransferase		albino	6		 Biochemical character,  Coloration - Chlorophyll								
11866	NDART1-4(3-2)	nDart1-4(3-2)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-4(3-2)	non-autonomous DNA-based active rice transposon 1-4(3-2)			3		 Other						GO:0032196 - transposition		
11867	NDART1-4(3-1)	nDart1-4(3-1)	NONAUTONOMOUS DNA-BASED ACTIVE RICE TRANSPOSON 1-4(3-1)	non-autonomous DNA-based active rice transposon 1-4(3-1)			3		 Other						GO:0032196 - transposition		
11868	DART0501	Dart0501	DNA-BASED ACTIVE RICE TRANSPOSON 0501	DNA-based active rice transposon 0501			5		 Other						GO:0032196 - transposition		
11869	DART0401	Dart0401	DNA-BASED ACTIVE RICE TRANSPOSON 0401	DNA-based active rice transposon 0401			4		 Other						GO:0032196 - transposition		
11870	DART1201	Dart1201	DNA-BASED ACTIVE RICE TRANSPOSON 1201	DNA-based active rice transposon 1201			12		 Other						GO:0032196 - transposition		
11871	DART1001	Dart1001	DNA-BASED ACTIVE RICE TRANSPOSON 1001	DNA-based active rice transposon 1001			10		 Other						GO:0032196 - transposition		
11872	DART0402	Dart0402	DNA-BASED ACTIVE RICE TRANSPOSON 0402	DNA-based active rice transposon 0402			4		 Other						GO:0032196 - transposition		
11873	DART0101	Dart0101	DNA-BASED ACTIVE RICE TRANSPOSON 0101	DNA-based active rice transposon 0101			1		 Other						GO:0032196 - transposition		
11874	TDD1	OsTDD1, ASB1, OASB1, OsASbeta1, ASbeta1, TDD1/OASB1	TRYPTOPHAN DEFICIENT DWARF 1	anthranilate synthase beta subunit 1, Anthranilate synthase beta 1 subunit, tryptophan deficient dwarf	ANTHRANILATE SYNTHASE BETA-SUBUNIT 1	tdd1	4	AB116721. a predicted lethal-phenotype gene in Lloyd et al. 2015. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Culm,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os04g0463500	LOC_Os04g38950.1, LOC_Os04g38950.3, LOC_Os04g38950.2				GO:0009723 - response to ethylene stimulus, GO:0009411 - response to UV, GO:0009507 - chloroplast, GO:0002213 - defense response to insect, GO:0009617 - response to bacterium, GO:0009851 - auxin biosynthetic process, GO:0000162 - tryptophan biosynthetic process, GO:0009848 - indoleacetic acid biosynthetic process via tryptophan, GO:0009790 - embryonic development, GO:0009651 - response to salt stress	TO:0002672 - auxin content, TO:0000370 - leaf width, TO:0002674 - tryptophan content, TO:0000227 - root length, TO:0000064 - embryo related trait, TO:0000207 - plant height, TO:0000424 - brown planthopper resistance, TO:0000499 - flower anatomy and morphology trait, TO:0000160 - UV light sensitivity	
11875	ASB2	OASB2, OsASB2, TRP4, OsTRP4	ANTHRANILATE SYNTHASE BETA-SUBUNIT 2	anthranilate synthase beta subunit 2, Anthranilate synthase beta 2 subunit	ANTHRANILATE SYNTHASE BETA-SUBUNIT 2		3	AB116722.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0718000 	LOC_Os03g50880.1				GO:0009411 - response to UV, GO:0009507 - chloroplast, GO:0009617 - response to bacterium, GO:0009723 - response to ethylene stimulus, GO:0009851 - auxin biosynthetic process, GO:0009651 - response to salt stress, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance, TO:0000160 - UV light sensitivity	
11876	FTL9	OsFTL9, OsFT-L9, FT-L9	FLOWERING TIME LIKE GENE 9	FT-like gene 9, FT-like 9	FLOWERING TIME LIKE PROTEIN 9	ftl9, ftl9*, FTL9W	1	AP003076. PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. a member of the FLOWERING LOCUS T (FT) protein family.	 Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape	Os01g074880	LOC_Os01g54490.1			129.0	GO:0009750 - response to fructose stimulus, GO:0009744 - response to sucrose stimulus, GO:0001558 - regulation of cell growth, GO:0009749 - response to glucose stimulus	TO:0002759 - grain number, TO:0000397 - grain size, TO:0000456 - spikelet number, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000271 - inflorescence length, TO:0002736 - flower number, TO:0000149 - seed width, TO:0000304 - seed thickness, TO:0000480 - nutrient sensitivity	PO:0025034 - leaf 
11877	MFT1	OsMFT1	MOTHER OF FT AND TFL1	MFT-like gene 1			6	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. a homolog of A. thaliana MOTHER OF FT AND TFL1 (E12A11). TO:0000740: branch morphology trait.	 Reproductive organ - Heading date,  Reproductive organ - Panicle, Mode of branching	Os06g0498800	LOC_Os06g30370.1			65.8	GO:0048573 - photoperiodism, flowering, GO:0010030 - positive regulation of seed germination, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus	TO:0000456 - spikelet number, TO:0000615 - abscisic acid sensitivity, TO:0000137 - days to heading, TO:0000172 - jasmonic acid sensitivity, TO:0000373 - inflorescence anatomy and morphology trait	
11878	MFT2	OsMFT2, OsMFT	MOTHER OF FT AND TFL 2	MFT-like gene 2		mft2, mft2-1, mft2-2, mft2-3	1	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. a homolog of A. thaliana MOTHER OF FT AND TFL1 (E12A11). the rice homolog of TaMFT2. a florigen-like protein. OsMFT in Mao et al. 2019. GO:2000033: regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy,  Character as QTL - Germination	Os01g0111600	LOC_Os01g02120.1			5.3	GO:0009787 - regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0005783 - endoplasmic reticulum, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0010030 - positive regulation of seed germination, GO:0048623 - seed germination on parent plant, GO:0048316 - seed development, GO:0010187 - negative regulation of seed germination, GO:0005829 - cytosol, GO:0009416 - response to light stimulus	TO:0000619 - vivipary, TO:0000653 - seed development trait, TO:0000615 - abscisic acid sensitivity, TO:0000075 - light sensitivity, TO:0002667 - abscisic acid content, TO:0000430 - germination rate, TO:0000253 - seed dormancy	PO:0001170 - seed development stage , PO:0009089 - endosperm , PO:0009010 - seed , PO:0009009 - plant embryo 
11879	RCN3	Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 3	RICE CENTRORADIALIS 3	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 3		12	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. AAD42896. a rice TFL1-like protein. GO:0090344:negative regulation of cell aging.	 Reproductive organ - Heading date	Os12g0152000	LOC_Os12g05590.1				GO:0005773 - vacuole, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0009744 - response to sucrose stimulus, GO:0006623 - protein targeting to vacuole, GO:0009910 - negative regulation of flower development, GO:0031982 - vesicle, GO:0008429 - phosphatidylethanolamine binding, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity	
11880	RCN4	Rcn4, OsRCN4	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 4	RICE CENTRORADIALIS 4	RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 4		4	PEBP (Phosphatidylethanolamine-binding-protein) Gene Family. AL662947. a rice TFL1-like protein. GO0090344:negative regulation of cell aging.	 Reproductive organ - Heading date,  Reproductive organ - panicle	Os04g0411400 	LOC_Os04g33570.1			58.6	GO:0009744 - response to sucrose stimulus, GO:0009416 - response to light stimulus, GO:0010229 - inflorescence development, GO:0005773 - vacuole, GO:0031982 - vesicle, GO:0005886 - plasma membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009910 - negative regulation of flower development, GO:0006623 - protein targeting to vacuole	TO:0000172 - jasmonic acid sensitivity, TO:0000050 - inflorescence branching, TO:0000615 - abscisic acid sensitivity, TO:0000075 - light sensitivity, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
11881	NH3	OsNPR3, OsNH3, NPR3, OsNPR3.1, OsNPR3.2, OsNPR3.3, OsBTBA4, BTBA4, OsNPR4, NPR4	NPR1 HOMOLOG 3	NPR1-like gene 3, NPR1 homolog 3, NPR1 paralog 3, BTB-type E3 ubiquitin ligase A4	NPR1 HOMOLOG 3		3	DQ450952. OsNPR4 in Wang et al. 2023. GO 0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os03g0667100	LOC_Os03g46440.3, LOC_Os03g46440.2, LOC_Os03g46440.1				GO:0002215 - defense response to nematode, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0009817 - defense response to fungus, incompatible interaction, GO:0050832 - defense response to fungus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus	TO:0000255 - sheath blight disease resistance, TO:0000207 - plant height, TO:0000063 - mimic response, TO:0000384 - nematode damage resistance, TO:0000175 - bacterial blight disease resistance	
11882	NPR4	OsNPR4	NPR1-LIKE GENE 4	NPR1-like gene 4, NPR1-like 4	NPR1-LIKE PROTEIN 4		1	DQ450954. BF889467.	 Tolerance and resistance - Disease resistance	Os01g0837000	LOC_Os01g61990.1, LOC_Os01g61990.2				GO:0009609 - response to symbiotic bacterium, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress	TO:0000074 - blast disease	
11883	BOP1	OsNPR5, NPR5, NH4, OsNH4, OsBOP1, OsBTBA3, BTBA3	BLADE-ON-PETIOLE 1	NPR1-like gene 5, NPR1 homolog 4, OsBLADE-ON-PETIOLE1, BTB-type E3 ubiquitin ligase A3	NPR1-LIKE PROTEIN 5	osbop1, osbop1-1	1	DQ450956. NH4 in Bai et al. 2011. GO:2000024: regulation of leaf development. PO:0025619: leaf sheath margin. GO:0080186: developmental vegetative growth. 	 Heterochrony,  Vegetative organ - Leaf	Os01g0948900	LOC_Os01g72020.1, LOC_Os01g72020.2				GO:0005737 - cytoplasm, GO:0010254 - nectary development, GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0048439 - flower morphogenesis, GO:0010227 - floral organ abscission, GO:0009790 - embryonic development, GO:0009954 - proximal/distal pattern formation, GO:0048366 - leaf development, GO:0005634 - nucleus, GO:0010582 - floral meristem determinacy, GO:0040034 - regulation of development, heterochronic	TO:0002689 - leaf sheath length, TO:0000492 - leaf shape	PO:0020128 - leaf margin , PO:0000017 - vascular leaf primordium , PO:0020104 - leaf sheath , PO:0020105 - ligule , PO:0020148 - shoot apical meristem , PO:0009105 - inflorescence branch meristem , PO:0001050 - leaf development stage 
11884	_	OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12	_	shaggy-like kinase gamma, GSK3/SHAGGY-Like Kinase 11, GSK3-like Kinase 2, SHAGGY-LIKE KINASE12			1	a GSK3/SHAGGY-like kinase clade I member. OsSK12 in Lu et al. 2020.	 Tolerance and resistance - Stress tolerance	Os01g0252100	LOC_Os01g14860.1, LOC_Os01g14860.4, LOC_Os01g14860.3, LOC_Os01g14860.2				GO:0009409 - response to cold, GO:0005829 - cytosol, GO:0009933 - meristem structural organization, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance	
11885	_	ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1	_	O-methyltransferase ROMT16, caffeoyl CoA O-methyltransferase 1			6		 Coloration - Anthocyanin,  Biochemical character	Os06g0165800	LOC_Os06g06980.3, LOC_Os06g06980.1				GO:0046686 - response to cadmium ion, GO:0009813 - flavonoid biosynthetic process, GO:0009807 - lignan biosynthetic process, GO:0009805 - coumarin biosynthetic process, GO:0042409 - caffeoyl-CoA O-methyltransferase activity	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
11886	INO2	OsINO2, RINO2, OsINO1-2	INOSITOL 1-PHOSPHATE SYNTHASE-2	inositol 1-phosphate synthase-2, Inositol-3-phosphate synthase 2, Myo-inositol-1-phosphate synthase 2, MI-1-P synthase 2, 1D-myo-inositol 3-phosphate synthase 2	INOSITOL 1-PHOSPHATE SYNTHASE-2		10	FJ237300 (PcINO1-2: Oryza coarctata INO1-2).	 Biochemical character	Os10g0369900	LOC_Os10g22450.1				GO:0008654 - phospholipid biosynthetic process, GO:0009644 - response to high light intensity, GO:0009791 - post-embryonic development, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0000166 - nucleotide binding, GO:0004512 - inositol-3-phosphate synthase activity, GO:0051607 - defense response to virus, GO:0050832 - defense response to fungus, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0006021 - inositol biosynthetic process	TO:0000488 - seed composition based quality trait, TO:0000064 - embryo related trait	
11887	_	OsIPK1, IPK1	_	inositol 1, 3, 4, 5, 6-pentakisphosphate 2-kinase 1			4	LOC_Os04g56580.	 Biochemical character	Os04g0661200	LOC_Os04g56580.1				GO:0032958 - inositol phosphate biosynthetic process, GO:0005524 - ATP binding, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0050832 - defense response to fungus, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0035299 - inositol pentakisphosphate 2-kinase activity, GO:0032942 - inositol tetrakisphosphate 2-kinase activity, GO:0030643 - cellular phosphate ion homeostasis, GO:0009737 - response to abscisic acid stimulus, GO:0006793 - phosphorus metabolic process	TO:0002666 - seed phosphorus content, TO:0000615 - abscisic acid sensitivity	
11888	_	OsIPK2, IPK2, IP6K	_	inositol 1, 3, 4, 5, 6-pentakisphosphate 2-kinase 2, IP6 Kinase			2		 Biochemical character	Os02g0523800	LOC_Os02g32370.1				GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0009846 - pollen germination, GO:0005886 - plasma membrane, GO:0008440 - inositol trisphosphate 3-kinase activity, GO:0009860 - pollen tube growth, GO:0010264 - myo-inositol hexakisphosphate biosynthetic process, GO:0000823 - inositol trisphosphate 6-kinase activity	TO:0000615 - abscisic acid sensitivity	
11889	_	OsIMP-1, IMP-1, OsIMP, IMP	_	inositol monophosphatase 1, L-myo-inositol monophosphatase, IMPase			3	GO:0080167:response to karrikin.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0587000	LOC_Os03g39000.1, LOC_Os03g39000.2				GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0006021 - inositol biosynthetic process, GO:0008934 - inositol-1(or 4)-monophosphatase activity, GO:0009737 - response to abscisic acid stimulus, GO:0010347 - L-galactose-1-phosphate phosphatase activity, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0046854 - phosphoinositide phosphorylation	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content	
11890	_	OsIMP-2, IMP-2	_	inositol monophosphatase 2			2		 Biochemical character	Os02g0169900	LOC_Os02g07350.1				GO:0046854 - phosphoinositide phosphorylation, GO:0009570 - chloroplast stroma, GO:0008934 - inositol-1(or 4)-monophosphatase activity		
11891	HSP80.2	OsHsp80.2, OsHSP80.2	80.2 KDA CLASS I HEAT SHOCK PROTEIN	80.2 kDa heat shock protein, 80.2-kD heat shock protein	80.2 KDA CLASS I HEAT SHOCK PROTEIN 		9	Q07078.	 Tolerance and resistance - Stress tolerance	Os09g0482400					GO:0048046 - apoplast, GO:0005730 - nucleolus, GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0071277 - cellular response to calcium ion, GO:0006952 - defense response, GO:0005829 - cytosol, GO:0005618 - cell wall, GO:0009908 - flower development, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0050821 - protein stabilization, GO:0006457 - protein folding, GO:0048366 - leaf development, GO:0010286 - heat acclimation		
11892	HSP71.1	OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3	71.1 KDA CLASS I HEAT SHOCK PROTEIN	71.1 kDa heat shock protein, 71.1-kD heat shock protein, Mediator 37_3	71.1 KDA CLASS I HEAT SHOCK PROTEIN 		3		 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Longevity,  Character as QTL - Grain quality	Os03g0276500	LOC_Os03g16860.1, LOC_Os03g16860.2				GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0046686 - response to cadmium ion, GO:0009270 - response to humidity, GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009408 - response to heat	TO:0010001 - percent germination, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000396 - grain yield, TO:0000441 - humidity related trait, TO:0000382 - 1000-seed weight, TO:0000345 - seed viability, TO:0000653 - seed development trait, TO:0000402 - grain width, TO:0000435 - seed longevity, TO:0000250 - vigor related trait	PO:0001170 - seed development stage 
11893	HSP24.1	OsHsp24.1, OsHSP24.1	24.1 KDA CLASS I HEAT SHOCK PROTEIN	24.1 kDa heat shock protein, 24.1-kD heat shock protein, heat shock 22 kDa protein	24.1 KDA CLASS I HEAT SHOCK PROTEIN 		2	Q6Z7V2.	 Tolerance and resistance - Stress tolerance	Os02g0758000	LOC_Os02g52150.2, LOC_Os02g52150.1				GO:0000302 - response to reactive oxygen species, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0005739 - mitochondrion	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
11894	HSP74.8	OsHsp74.8, OsHSP74.8	74.8 KDA CLASS I HEAT SHOCK PROTEIN	74.8 kDa heat shock protein, 74.8-kD heat shock protein	74.8 KDA CLASS I HEAT SHOCK PROTEIN 		9		 Tolerance and resistance - Stress tolerance	Os09g0474300	LOC_Os09g29840.1, LOC_Os09g29840.2				GO:0005524 - ATP binding, GO:0006457 - protein folding, GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0000302 - response to reactive oxygen species	TO:0000259 - heat tolerance	
11895	HSP58.7	OsHsp58.7, OsHSP58.7, OsISC25, ISC25	58.7 KDA CLASS I HEAT SHOCK PROTEIN	58.7 kDa heat shock protein, 58.7-kD heat shock protein, Iron-sulfur cluster protein 25, heat shock protein 70	58.7 KDA CLASS I HEAT SHOCK PROTEIN		9	heat shock protein 70 in Hihara et al. 1997. D29708. a DnaK/Hsp70s family protein. OsSUF4 target gene (Liu et al. 2019).	 Tolerance and resistance - Stress tolerance	Os09g0491772	LOC_Os09g31486.2, LOC_Os09g31486.1				GO:0000302 - response to reactive oxygen species, GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0005739 - mitochondrion, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane, GO:0006457 - protein folding, GO:0005618 - cell wall, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
11896	HSP50.2	OsHsp50.2, OsHSP50.2	50.2 KDA CLASS I HEAT SHOCK PROTEIN	50.2 kDa heat shock protein, 50.2-kD heat shock protein	50.2 KDA CLASS I HEAT SHOCK PROTEIN		9	LOC_Os09g36420. Hsp90 family gene.	 Tolerance and resistance - Stress tolerance	Os09g0534600	LOC_Os09g36420.1				GO:0071277 - cellular response to calcium ion, GO:0006457 - protein folding, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009908 - flower development, GO:0010286 - heat acclimation, GO:0048046 - apoplast, GO:0048366 - leaf development, GO:0050821 - protein stabilization, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005739 - mitochondrion, GO:0005730 - nucleolus, GO:0005618 - cell wall, GO:0005524 - ATP binding		
11897	PDIL1-2	PDIL1;2, OsPDIL1;2, PDIL 1-2, OsPDIL1-2, OsTrx13, Trx13	PROTEIN DISULFIDE ISOMERASE-LIKE 1-2	PROTEIN DISULFIDE ISOMERASE-LIKE 1;2, PDI-like protein 1-2, thioredoxin 13	PROTEIN DISULFIDE ISOMERASE-LIKE 1-2		4	Q7XRB5. AY739308.	 Biochemical character	Os04g0436300	LOC_Os04g35600.1				GO:0006457 - protein folding, GO:0046686 - response to cadmium ion, GO:0043067 - regulation of programmed cell death, GO:0005886 - plasma membrane, GO:0048316 - seed development, GO:0034976 - response to endoplasmic reticulum stress, GO:0009505 - plant-type cell wall, GO:0000327 - lytic vacuole within protein storage vacuole, GO:0009507 - chloroplast, GO:0009579 - thylakoid, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009790 - embryonic development, GO:0045454 - cell redox homeostasis, GO:0005788 - endoplasmic reticulum lumen, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0003756 - protein disulfide isomerase activity, GO:0009651 - response to salt stress, GO:0010043 - response to zinc ion		
11898	PDIL1-3	PDIL1;3, PDIL 1-3, OsPDIL1-3, OsTrx07, Trx07, OsTrx7, Trx7	PROTEIN DISULFIDE ISOMERASE-LIKE 1-3	PROTEIN DISULFIDE ISOMERASE-LIKE 1;3, PDI-like protein 1-3, thioredoxin 7	PROTEIN DISULFIDE ISOMERASE-LIKE 1-3		2	Q69ST6.	 Biochemical character	Os02g0554900	LOC_Os02g34940.1, LOC_Os02g34940.2				GO:0048316 - seed development, GO:0000327 - lytic vacuole within protein storage vacuole, GO:0005788 - endoplasmic reticulum lumen, GO:0005886 - plasma membrane, GO:0006457 - protein folding, GO:0006662 - glycerol ether metabolic process, GO:0009055 - electron carrier activity, GO:0009505 - plant-type cell wall, GO:0009507 - chloroplast, GO:0009579 - thylakoid, GO:0009651 - response to salt stress, GO:0009790 - embryonic development, GO:0010043 - response to zinc ion, GO:0015035 - protein disulfide oxidoreductase activity, GO:0034976 - response to endoplasmic reticulum stress, GO:0043067 - regulation of programmed cell death, GO:0003756 - protein disulfide isomerase activity, GO:0045454 - cell redox homeostasis, GO:0046686 - response to cadmium ion		
11899	PDIL1-5	PDIL1;5, PDIL 1-5, OsPDIL1-5, OsTrx21, Trx21	PROTEIN DISULFIDE ISOMERASE-LIKE 1-5	PROTEIN DISULFIDE ISOMERASE-LIKE 1;5, PDI-like protein 1-5, Thioredoxin 21	PROTEIN DISULFIDE ISOMERASE-LIKE 1-5		6	Q5WA72.	 Biochemical character	Os06g0163400	LOC_Os06g06790.1				GO:0045454 - cell redox homeostasis, GO:0003756 - protein disulfide isomerase activity, GO:0006457 - protein folding, GO:0005788 - endoplasmic reticulum lumen		
11900	PDIL2-1	PDIL2;1, OsPDIL2;1, OsPDIL2-1, OsTrx17, Trx17	PROTEIN DISULFIDE ISOMERASE-LIKE 2-1	PROTEIN DISULFIDE ISOMERASE-LIKE 2;1, PDI-like protein 2-1, thioredoxin 17	PROTEIN DISULFIDE ISOMERASE-LIKE 2-1		5	Q75M08. AU069742, AU173026, AU163011.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0156300	LOC_Os05g06430.1, LOC_Os05g06430.2				GO:0009408 - response to heat, GO:0015035 - protein disulfide oxidoreductase activity, GO:0005783 - endoplasmic reticulum, GO:0006457 - protein folding, GO:0006662 - glycerol ether metabolic process, GO:0005576 - extracellular region, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0003756 - protein disulfide isomerase activity	TO:0000259 - heat tolerance	
11901	PDIL2-2	PDIL2;2, OsPDIL2;2, OsPDIL2-2, OsTrx02, Trx02, OsTrx2, Trx2	PROTEIN DISULFIDE ISOMERASE-LIKE 2-2	PROTEIN DISULFIDE ISOMERASE-LIKE 2;2, PDI-like protein 2-2	PROTEIN DISULFIDE ISOMERASE-LIKE 2-2		1	Q942L2.	 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character	Os01g0339900	LOC_Os01g23740.1, LOC_Os01g23740.2				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0006457 - protein folding, GO:0009055 - electron carrier activity, GO:0003756 - protein disulfide isomerase activity, GO:0005576 - extracellular region, GO:0006662 - glycerol ether metabolic process, GO:0005783 - endoplasmic reticulum, GO:0009856 - pollination, GO:0009860 - pollen tube growth		
11902	PDIL5-1	PDIL5;1, OsPDIL5;1, PDIL 5-1, OsPDIL5-1, OsTrx09, Trx09, OsTrx9, Trx9	PROTEIN DISULFIDE ISOMERASE-LIKE 5-1	PROTEIN DISULFIDE ISOMERASE-LIKE 5;1, PDI-like protein 5-1, thioredoxin 9	PROTEIN DISULFIDE ISOMERASE-LIKE 5-1		3	Q10N04.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0287900	LOC_Os03g17860.1, LOC_Os03g17860.2				GO:0009408 - response to heat, GO:0045454 - cell redox homeostasis	TO:0000259 - heat tolerance	
11903	PDIL5-2	PDIL5;2, OsPDIL5;2, OsPDIL5-2, OsTrx12, Trx12	PROTEIN DISULFIDE ISOMERASE-LIKE 5-2	PROTEIN DISULFIDE ISOMERASE-LIKE 5;2, PDI-like protein 5-2, thioredoxin 12	PROTEIN DISULFIDE ISOMERASE-LIKE 5-2		4	Q0JD42. 	 Biochemical character	Os04g0432500	LOC_Os04g35290.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0006662 - glycerol ether metabolic process, GO:0016021 - integral to membrane, GO:0045454 - cell redox homeostasis, GO:0005886 - plasma membrane, GO:0009055 - electron carrier activity, GO:0005783 - endoplasmic reticulum, GO:0009505 - plant-type cell wall		
11904	PDIL5-3	PDIL5;3, PDIL 5-3, OsPDIL5-3, OsTrx06, Trx06, OsTrx6, Trx6	PROTEIN DISULFIDE ISOMERASE-LIKE 5-3	PROTEIN DISULFIDE ISOMERASE-LIKE 5;3, PDI-like protein 5-3, thioredoxin 6	PROTEIN DISULFIDE ISOMERASE-LIKE 5-3		2	Q0E0I1.	 Biochemical character	Os02g0550300	LOC_Os02g34530.1				GO:0009505 - plant-type cell wall, GO:0016021 - integral to membrane, GO:0006662 - glycerol ether metabolic process, GO:0005783 - endoplasmic reticulum, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0005886 - plasma membrane		
11905	PDIL5-4	PDIL5;4, OsPDIL5;4, PDIL 5-4, OsPDIL5-4	PROTEIN DISULFIDE ISOMERASE-LIKE 5-4	PROTEIN DISULFIDE ISOMERASE-LIKE 5;4, PDI-like protein 5-4	PROTEIN DISULFIDE ISOMERASE-LIKE 5-4		7	Q69SA9.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0524100	LOC_Os07g34030.1, LOC_Os07g34030.2				GO:0045454 - cell redox homeostasis, GO:0016021 - integral to membrane, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
11909	_	OsSAE1a	_	E1 enzyme SAE1a											GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
11916	RAU1	OsLAX1, OsRAU1, OsAUX1, LAX1, AUX1	RELATED TO AUX1	like aux1-1, related to AUX1-1, auxin transporter 1		osaux1, osaux1-1, osaux1-2, osaux1-3	1	Q5N892. AB275160. auxin influx carrier. GO:0060918: auxin transport. rice ortholog of Arabidopsis AUX1. GO:0080161: auxin transmembrane transporter activity. GO:0071731: response to nitric oxide.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0856500	LOC_Os01g63770.2, LOC_Os01g63770.1				GO:0006865 - amino acid transport, GO:0015293 - symporter activity, GO:0009609 - response to symbiotic bacterium, GO:0009734 - auxin mediated signaling pathway, GO:0048449 - floral organ formation, GO:0046685 - response to arsenic, GO:0009873 - ethylene mediated signaling pathway, GO:0009733 - response to auxin stimulus, GO:0080022 - primary root development, GO:0048767 - root hair elongation, GO:0046686 - response to cadmium ion, GO:0048829 - root cap development, GO:0042594 - response to starvation, GO:0010328 - auxin influx transmembrane transporter activity, GO:0010449 - root meristem growth, GO:0010071 - root meristem specification, GO:0009629 - response to gravity, GO:0016021 - integral to membrane, GO:0010446 - response to alkalinity, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0010031 - circumnutation, GO:0048527 - lateral root development, GO:0010311 - lateral root formation, GO:0005886 - plasma membrane, GO:0000302 - response to reactive oxygen species	TO:0000511 - phosphorus uptake, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0006022 - floral organ development trait, TO:0000145 - internode length, TO:0000137 - days to heading, TO:0006001 - salt tolerance, TO:0002665 - root hair length, TO:0000163 - auxin sensitivity, TO:0000227 - root length, TO:0001013 - lateral root number, TO:0001012 - lateral root length, TO:0002693 - gravity response trait, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0002672 - auxin content	PO:0007600 - floral organ differentiation stage , PO:0001031 - 4 root elongation stage , PO:0004705 - stamen primordium , PO:0004703 - carpel primordium , PO:0007519 - 5 root hair formation stage , PO:0007520 - root development stage , PO:0025477 - floral organ primordium 
11917	RAU2	OsLAX2, OsRAU2, OsAUX3, LAX2, AUX3	RELATED TO AUX1-2	like aux1-2, related to AUX1-2, auxin transporter 3			3	AB275161.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character	Os03g0244600	LOC_Os03g14080.1				GO:0009624 - response to nematode, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0048829 - root cap development	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020148 - shoot apical meristem 
11918	RAU3	OsLAX3, OsRAU3, OsAUX2, LAX3, AUX2, OsAUX3, AUX3, ARF2	RELATED TO AUX1-3	like aux1-3, related to AUX1-3, auxin transporter 2		osaux3-1, osaux3-2	5	Q688J2. AB275162. qGL5 candidate. OsAUX3 in Wang et al. 2019. GO:2000280: regulation of root development. GO:0035618: root hair. TO:0000995: aluminum content trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Biochemical character	Os05g0447200	LOC_Os05g37470.3, LOC_Os05g37470.2, LOC_Os05g37470.1				GO:0009651 - response to salt stress, GO:0051511 - negative regulation of unidimensional cell growth, GO:0010044 - response to aluminum ion, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0009629 - response to gravity, GO:0010541 - acropetal auxin transport, GO:0006865 - amino acid transport, GO:0009414 - response to water deprivation, GO:0009415 - response to water, GO:0009737 - response to abscisic acid stimulus, GO:0048364 - root development, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009921 - auxin efflux carrier complex, GO:0010328 - auxin influx transmembrane transporter activity	TO:0000590 - grain weight, TO:0002665 - root hair length, TO:0000227 - root length, TO:0000382 - 1000-seed weight, TO:0000354 - aluminum sensitivity, TO:0000276 - drought tolerance, TO:0001013 - lateral root number, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000237 - water stress trait, TO:0002693 - gravity response trait, TO:0000656 - root development trait, TO:0000734 - grain length	PO:0020127 - primary root , PO:0007520 - root development stage , PO:0020121 - lateral root 
11919	RAU4	OsLAX4, OsRAU4, OsAUX4, LAX4, AUX4	RELATED TO AUX1-4	like aux1-4, related to AUX1-4, auxin transporter 4, AUXIN4		osaux4, osaux4-1, osaux4-2	10	Q7XGU4. AB275163. GO:2000280: regulation of root development. GO:0080147: root hair cell development.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os10g0147400	LOC_Os10g05690.1				GO:0009734 - auxin mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0009629 - response to gravity, GO:0015293 - symporter activity, GO:0048767 - root hair elongation, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0016036 - cellular response to phosphate starvation, GO:0080022 - primary root development, GO:0042594 - response to starvation, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0045787 - positive regulation of cell cycle, GO:0048829 - root cap development, GO:0051781 - positive regulation of cell division, GO:0009651 - response to salt stress, GO:0009624 - response to nematode, GO:0006865 - amino acid transport, GO:0016021 - integral to membrane, GO:0048364 - root development	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000227 - root length, TO:0000656 - root development trait, TO:0002693 - gravity response trait, TO:0002665 - root hair length, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity	PO:0009005 - root , PO:0007520 - root development stage , PO:0020148 - shoot apical meristem 
11920	_	OsLAX5, OsAUX5, LAX5, AUX5	_	like aux1-5, auxin transporter 5			11	Q53JG7. GO:0060919:auxin influx. GO:0003333: amino acid transmembrane transport. GO:0060919: auxin influx. GO:0071555: cell wall organization.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0169200 	LOC_Os11g06820.1				GO:0009651 - response to salt stress, GO:0016126 - sterol biosynthetic process, GO:0048767 - root hair elongation, GO:0010583 - response to cyclopentenone, GO:0000271 - polysaccharide biosynthetic process, GO:0009825 - multidimensional cell growth, GO:0006084 - acetyl-CoA metabolic process, GO:0005886 - plasma membrane, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0015171 - amino acid transmembrane transporter activity, GO:0009733 - response to auxin stimulus, GO:0016132 - brassinosteroid biosynthetic process, GO:0009932 - cell tip growth, GO:0006865 - amino acid transport, GO:0009734 - auxin mediated signaling pathway, GO:0009926 - auxin polar transport, GO:0010311 - lateral root formation, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0010328 - auxin influx transmembrane transporter activity, GO:0015293 - symporter activity, GO:0016021 - integral to membrane, GO:0048829 - root cap development	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence 
11921	MDR4	OsABCB1, ABCB1, OsPGP1, OsMDR4	MULTIDRUG RESISTANCE 4	ABC transporter superfamily ABCB subgroup member 1, P-Glycoprotein 1, multidrug resistance 4	MULTIDRUG RESISTANCE 4		1	AJ535067. LOC_Os01g18670.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0290700	LOC_Os01g18670.1				GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048767 - root hair elongation, GO:0010540 - basipetal auxin transport, GO:0010315 - auxin efflux, GO:0009735 - response to cytokinin stimulus, GO:0009630 - gravitropism, GO:0008559 - xenobiotic-transporting ATPase activity, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
11922	MDR6	OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2	MULTIDRUG RESISTANCE 6	ABC transporter superfamily ABCB subgroup member 2, P-Glycoprotein 2	MULTIDRUG RESISTANCE 6		1	AJ535071. LOC_Os01g34970.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0533900	LOC_Os01g34970.1, LOC_Os01g34970.2				GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002672 - auxin content	
11923	MDR5	OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34	MULTIDRUG RESISTANCE 5	ABC transporter superfamily ABCB subgroup member 3, P-Glycoprotein 3, multidrug resistance 5, Iron-sulfur cluster protein 34	MULTIDRUG RESISTANCE 5		1	AJ535066. LOC_Os01g35030.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0534700	LOC_Os01g35030.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
11924	MDR9	OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30	MULTIDRUG RESISTANCE 9	ABC transporter superfamily ABCB subgroup member 4, P-Glycoprotein 4, multidrug resistance 9, Iron-sulfur cluster protein 30	MULTIDRUG RESISTANCE 9		1	AJ535063. LOC_Os01g50080.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0695700	LOC_Os01g50070.1, LOC_Os01g50080.1				GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding	TO:0000163 - auxin sensitivity, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed , PO:0001170 - seed development stage 
11925	MDR8	OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31	MULTIDRUG RESISTANCE 8	ABC transporter superfamily ABCB subgroup member 6, P-Glycoprotein 6, multidrug resistance 8, Iron-sulfur cluster protein 31	MULTIDRUG RESISTANCE 8		1	AJ535064. LOC_Os01g50160.	 Tolerance and resistance - Stress tolerance	Os01g0696600	LOC_Os01g50160.1				GO:0005886 - plasma membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
11926	MDR17	OsABCB7, ABCB7, OsPGP7, OsMDR17	MULTIDRUG RESISTANCE 17	ABC transporter superfamily ABCB subgroup member 7, P-Glycoprotein 7, multidrug resistance 17	MULTIDRUG RESISTANCE 17		1	LOC_Os01g52550	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0723800	LOC_Os01g52550.1				GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0010540 - basipetal auxin transport, GO:0010541 - acropetal auxin transport, GO:0005524 - ATP binding, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance	
11927	MDR10	OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29	MULTIDRUG RESISTANCE 10	ABC transporter superfamily ABCB subgroup member 8, P-Glycoprotein 8, multidrug resistance 10, Iron-sulfur cluster protein 29	MULTIDRUG RESISTANCE 10		1	AJ535062. LOC_Os01g74470.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0976100	LOC_Os01g74470.1				GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
11928	ABCB9	OsABCB9, OsPGP9, OsISC33	ABC TRANSPORTER B FAMILY MEMBER 9	ABC transporter superfamily ABCB subgroup member 9, P-Glycoprotein 9, Iron-sulfur cluster protein 33	ABC TRANSPORTER B FAMILY MEMBER 9		2	Q6YUU5. LOC_Os02g09720.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0190300	LOC_Os02g09720.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0010540 - basipetal auxin transport, GO:0010541 - acropetal auxin transport, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity	
11929	ABCB10	OsABCB10, OsPGP10	ABC TRANSPORTER B FAMILY MEMBER 10	ABC transporter superfamily ABCB subgroup member 10, P-Glycoprotein 10	ABC TRANSPORTER B FAMILY MEMBER 10		2	LOC_Os02g21750.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0323000	LOC_Os02g21750.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence 
11930	MDR11	OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2	MULTIDRUG RESISTANCE 11	ABC transporter superfamily ABCB subgroup member 11, P-Glycoprotein 11, multidrug resistance 11	MULTIDRUG RESISTANCE 11		2	AJ535061. LOC_Os02g46680.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0693700	LOC_Os02g46680.1				GO:0009651 - response to salt stress, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0010541 - acropetal auxin transport, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0010540 - basipetal auxin transport, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence 
11931	ABCB12	OsABCB12, OsPGP12, PGP12	ABC TRANSPORTER B FAMILY MEMBER 12	ABC transporter superfamily ABCB subgroup member 12, P-Glycoprotein 12	ABC TRANSPORTER B FAMILY MEMBER 12		3	Os03g0181700 (not found in RapDB, Ncbi and UniProt).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0181675/Os03g0181750	LOC_Os03g08380.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0009507 - chloroplast, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
11932	ABCB13	OsABCB13, OsPGP13	ABC TRANSPORTER B FAMILY MEMBER 13	ABC transporter superfamily ABCB subgroup member 13, P-Glycoprotein 13	ABC TRANSPORTER B FAMILY MEMBER 13		3	LOC_Os03g17180.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0280000	LOC_Os03g17180.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
11933	MDR13	OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2	MULTIDRUG RESISTANCE 13	ABC transporter superfamily ABCB subgroup member 14, P-Glycoprotein 14, multidrug resistance 13	MULTIDRUG RESISTANCE 13		4	AJ535059. LOC_Os04g38570.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0459000	LOC_Os04g38570.2, LOC_Os04g38570.1				GO:0009637 - response to blue light, GO:0016021 - integral to membrane, GO:0010541 - acropetal auxin transport, GO:0009414 - response to water deprivation, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009640 - photomorphogenesis, GO:0008361 - regulation of cell size, GO:0009733 - response to auxin stimulus, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0010540 - basipetal auxin transport, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0048443 - stamen development, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0009958 - positive gravitropism	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
11934	MDR1	OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125	MULTIDRUG RESISTANCE 1	ABC transporter superfamily ABCB subgroup member 15, P-Glycoprotein 15, multidrug resistance 1	MULTIDRUG RESISTANCE 1		4	AJ535069, AJ535070. MDR1 and MDR2 in Jasinski et al. 2003. LOC_Os04g40570. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os04g0481700	LOC_Os04g40570.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0010540 - basipetal auxin transport, GO:0009414 - response to water deprivation, GO:0010541 - acropetal auxin transport, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0009266 - response to temperature stimulus, GO:0005524 - ATP binding	TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance	PO:0009066 - anther 
11935	MDR12	OsABCB16, ABCB16, OsPGP16, OsMDR12	MULTIDRUG RESISTANCE 12	ABC transporter superfamily ABCB subgroup member 16, P-Glycoprotein 16, multidrug resistance 12	MULTIDRUG RESISTANCE 12		4	AJ535060. LOC_Os04g54930.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0642000	LOC_Os04g54930.1				GO:0010541 - acropetal auxin transport, GO:0009958 - positive gravitropism, GO:0010329 - auxin efflux transmembrane transporter activity, GO:0009637 - response to blue light, GO:0008361 - regulation of cell size, GO:0010540 - basipetal auxin transport, GO:0009624 - response to nematode, GO:0048443 - stamen development, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0043481 - anthocyanin accumulation in tissues in response to UV light, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009640 - photomorphogenesis, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
11936	MDR3	OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1	MULTIDRUG RESISTANCE 3	ABC transporter superfamily ABCB subgroup member 17, P-Glycoprotein 17, multidrug resistance 3	MULTIDRUG RESISTANCE 3		5	AJ535068. LOC_Os05g04610.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0137200	LOC_Os05g04610.1				GO:0048767 - root hair elongation, GO:0008559 - xenobiotic-transporting ATPase activity, GO:0010315 - auxin efflux, GO:0009630 - gravitropism, GO:0009735 - response to cytokinin stimulus, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0010540 - basipetal auxin transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
11937	ABCB18	OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2	ABC TRANSPORTER B FAMILY MEMBER 18	ABC transporter superfamily ABCB subgroup member 18, P-Glycoprotein 18	ABC TRANSPORTER B FAMILY MEMBER 18		5	LOC_Os05g47490.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0548300	LOC_Os05g47490.1				GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0005886 - plasma membrane	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity	
11938	ABCB19	OsABCB19, OsPGP19	ABC TRANSPORTER B FAMILY MEMBER 19	ABC transporter superfamily ABCB subgroup member 19, P-Glycoprotein 19	ABC TRANSPORTER B FAMILY MEMBER 19		5	LOC_Os05g47500.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0548500	LOC_Os05g47500.1				GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	
11939	MDR15	OsABCB20, ABCB20, OsPGP20, OsMDR15	MULTIDRUG RESISTANCE 15	ABC transporter superfamily ABCB subgroup member 20, P-Glycoprotein 20, multidrug resistance 15	MULTIDRUG RESISTANCE 15		8	AJ535057. LOC_Os08g05690.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0153000	LOC_Os08g05690.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process	TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
11940	MDR16	OsABCB21, ABCB21, OsPGP21, OsMDR16	MULTIDRUG RESISTANCE 16	ABC transporter superfamily ABCB subgroup member 21, P-Glycoprotein 21, multidrug resistance 16	MULTIDRUG RESISTANCE 16		8	AJ535056. LOC_Os08g05710.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0153200	LOC_Os08g05710.1				GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
11941	MDR14	OsABCB22, ABCB22, OsPGP22, OsMDR14	MULTIDRUG RESISTANCE 14	ABC transporter superfamily ABCB subgroup member 22, P-Glycoprotein 22, multidrug resistance 14	MULTIDRUG RESISTANCE 14		8	AJ535058. LOC_Os08g45030.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0564300	LOC_Os08g45030.1				GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0005737 - cytoplasm, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
11942	ABCB23	OsABCB23, OsISC32, OsATM3, ATM3	ABC TRANSPORTER B FAMILY MEMBER 23	ABC transporter superfamily ABCB subgroup member 23, Iron-sulfur cluster protein 32, ABC transporter of mitochondrion 3	ABC TRANSPORTER B FAMILY MEMBER 23		6	LOC_Os06g03770. the rice ortholog of Arabidopsis ATM3. GO:0072593: reactive oxygen species metabolic process. GO:0090351: seedling development.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Vegetative organ - Shoot apical meristem(SAM)	Os06g0128300	LOC_Os06g03770.1				GO:0048527 - lateral root development, GO:0005524 - ATP binding, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0006879 - cellular iron ion homeostasis, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006281 - DNA repair, GO:0006749 - glutathione metabolic process, GO:0006801 - superoxide metabolic process, GO:0010073 - meristem maintenance, GO:0010431 - seed maturation, GO:0016226 - iron-sulfur cluster assembly, GO:0045787 - positive regulation of cell cycle, GO:0048364 - root development, GO:0050790 - regulation of catalytic activity, GO:0051301 - cell division, GO:0055072 - iron ion homeostasis, GO:0009941 - chloroplast envelope, GO:0010288 - response to lead ion, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0040014 - regulation of multicellular organism growth, GO:0046686 - response to cadmium ion, GO:0005743 - mitochondrial inner membrane, GO:0009555 - pollen development, GO:0009658 - chloroplast organization	TO:0000207 - plant height, TO:0001012 - lateral root length, TO:0000656 - root development trait, TO:0002661 - seed maturation, TO:0000227 - root length, TO:0006020 - shoot apical meristem development	PO:0020148 - shoot apical meristem , PO:0006085 - root meristem , PO:0007632 - seed maturation stage , PO:0007520 - root development stage , PO:0000016 - lateral root primordium 
11943	ABCB24	OsABCB24	ABC TRANSPORTER B FAMILY MEMBER 24	ABC transporter superfamily ABCB subgroup member 24	ABC TRANSPORTER B FAMILY MEMBER 24		1		 Biochemical character	Os01g0911300	LOC_Os01g68330.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
11944	ABCB26	OsABCB26	ABC TRANSPORTER B FAMILY MEMBER 26	ABC transporter superfamily ABCB subgroup member 26	ABC TRANSPORTER B FAMILY MEMBER 26		7		 Biochemical character	Os07g0464600	LOC_Os07g28090.1				GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0015421 - oligopeptide-transporting ATPase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
11945	ABCB27	OsABCB27	ABC TRANSPORTER B FAMILY MEMBER 27	ABC transporter superfamily ABCB subgroup member 27	ABC TRANSPORTER B FAMILY MEMBER 27		4		 Biochemical character	Os04g0413000	LOC_Os04g33700.1				GO:0010329 - auxin efflux transmembrane transporter activity, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0010541 - acropetal auxin transport, GO:0010540 - basipetal auxin transport		
11946	ABCA1	OsABCA1	ABC TRANSPORTER A FAMILY MEMBER 1	ABC transporter superfamily ABCA subgroup member 1	ABC TRANSPORTER A FAMILY MEMBER 1		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0211000	LOC_Os02g11960.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
11947	ABCA2	OsABCA2, OsISC27	ABC TRANSPORTER A FAMILY MEMBER 2	ABC transporter superfamily ABCA subgroup member 2, Iron-sulfur cluster protein 27	ABC TRANSPORTER A FAMILY MEMBER 2		6		 Biochemical character	Os06g0589300	LOC_Os06g38950.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
11948	ABCA3	OsABCA3	ABC TRANSPORTER A FAMILY MEMBER 3	ABC transporter superfamily ABCA subgroup member 3	ABC TRANSPORTER A FAMILY MEMBER 3		8		 Biochemical character	Os08g0398000	LOC_Os08g30740.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005886 - plasma membrane		
11949	ABCA4	OsABCA4	ABC TRANSPORTER A FAMILY MEMBER 4	ABC transporter superfamily ABCA subgroup member 4	ABC TRANSPORTER A FAMILY MEMBER 4		8		 Biochemical character	Os08g0398300	LOC_Os08g30770.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane		
11950	ABCA5	OsABCA5	ABC TRANSPORTER A FAMILY MEMBER 5	ABC transporter superfamily ABCA subgroup member 5	ABC TRANSPORTER A FAMILY MEMBER 5		8		 Biochemical character	Os08g0398350	LOC_Os08g30780.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
11951	ABCA6	OsABCA6	ABC TRANSPORTER A FAMILY MEMBER 6	ABC transporter superfamily ABCA subgroup member 6	ABC TRANSPORTER A FAMILY MEMBER 6		9			Os09g0360900					GO:0005524 - ATP binding		
11952	MRP1	OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1	ABC transporter superfamily ABCC subgroup member 1, multidrug resistance-associated protein 1, C-type ATP-binding cassette transporter 1, C-type ABC transporter 1	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1	osabcc1-1, osabcc1-2, has1	4	AJ535081. TO:0006054: arsenic concentration. ABC transporter (Cd/Pb/As transport). GO:0071722: detoxification of arsenic-containing substance. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0620000	LOC_Os04g52900.1, LOC_Os04g52900.2				GO:0046686 - response to cadmium ion, GO:0007584 - response to nutrient, GO:0046685 - response to arsenic, GO:0009705 - plant-type vacuole membrane	TO:0000102 - phosphorus sensitivity	PO:0009005 - root , PO:0005020 - vascular bundle , PO:0005417 - phloem , PO:0009053 - peduncle , PO:0020141 - stem node , PO:0025034 - leaf , PO:0009006 - shoot system 
11953	MRP2	OsABCC2, OsMRP2	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2	ABC transporter superfamily ABCC subgroup member 2, multidrug resistance-associated protein 2	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2		1	AJ535080.	 Biochemical character	Os01g0902100	LOC_Os01g67580.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process		
11954	MRP3	OsABCC3, ABCC3, OsMRP3	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 3	ABC transporter superfamily ABCC subgroup member 3, multidrug resistance-associated protein 3	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 3		1	AJ535079.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0173900	LOC_Os01g07870.1				GO:0046689 - response to mercury ion, GO:0006200 - ATP catabolic process, GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0010038 - response to metal ion	TO:0000034 - chromium sensitivity	
11955	MRP4	OsABCC4, ABCC4, OsMRP4	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4	ABC transporter superfamily ABCC subgroup member 4, multidrug resistance-associated protein 4	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4		2	AJ535078. Os02g0288733 (in Rap2 (build4)).	 Biochemical character	Os02g0288700/Os02g0288766	LOC_Os02g18700.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006200 - ATP catabolic process		
11956	MRP5	OsABCC5, OsMRP5, AB3C_Ath	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5	ABC transporter superfamily ABCC subgroup member 5, multidrug resistance-associated protein 5	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5		2	AJ535077.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0288400	LOC_Os02g18670.1				GO:0005774 - vacuolar membrane, GO:0000325 - plant-type vacuole, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0051707 - response to other organism, GO:0048046 - apoplast, GO:0016021 - integral to membrane, GO:0015431 - glutathione S-conjugate-exporting ATPase activity, GO:0010290 - chlorophyll catabolite transporter activity, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance	
11957	MRP6	OsABCC6, OsMRP6	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6	ABC transporter superfamily ABCC subgroup member 6, multidrug resistance-associated protein 6	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6		4	AJ535076. Os04g0588600 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character						GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
11958	MRP7	OsABCC7, OsMRP7	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7	ABC transporter superfamily ABCC subgroup member 7, multidrug resistance-associated protein 7	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7		4	AJ535075.	 Biochemical character	Os04g0588700	LOC_Os04g49900.1				GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding		
11959	MRP8	OsABCC8, OsMRP8a, OsMRP8a, OsMRP8	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 8	ABC transporter superfamily ABCC subgroup member 8, multidrug resistance-associated protein 8	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 8		1	AJ535074. LOC_Os01g25386. Os01g0356000 (in Rap1 (build3)).	 Biochemical character	Os01g0356400 	LOC_Os01g25386.1				GO:0000325 - plant-type vacuole, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0015884 - folic acid transport, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009624 - response to nematode, GO:0010118 - stomatal movement, GO:0016887 - ATPase activity, GO:0008517 - folic acid transporter activity		
11960	MRP9	OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 9	ABC transporter superfamily ABCC subgroup member 9, multidrug resistance-associated protein 9	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 9		4	LOC_Os04g13210. AJ535073. OsABCC14 in Wang et al. 2017.	 Biochemical character	Os04g0209200	LOC_Os04g13210.1				GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0000325 - plant-type vacuole, GO:0015884 - folic acid transport, GO:0010118 - stomatal movement, GO:0009624 - response to nematode, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0008517 - folic acid transporter activity, GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane		
11961	MRP10	OsABCC10, OsMRP10	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 10	ABC transporter superfamily ABCC subgroup member 10, multidrug resistance-associated protein 10	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 10		4	AJ535072.	 Biochemical character	Os04g0209300	LOC_Os04g13220.1				GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances		
11962	MRP11	OsABCC11, ABCC11, OsMRP11, OsABCC8	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 11	ABC transporter superfamily ABCC subgroup member 11, multidrug resistance-associated protein 11	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 11	osabcc8-1, osabcc8-2	6	AJ535215. the EcABCC8 (Echinochloa colona ABCC8) ortholog. OsABCC8 in Pan et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0561800	LOC_Os06g36650.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0009635 - response to herbicide, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane	TO:0005006 - glyphosate sensitivity	
11963	MRP12	OsABCC12, OsMRP12	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 12	ABC transporter superfamily ABCC subgroup member 12, multidrug resistance-associated protein 12	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 12		6			Os06g0184700	LOC_Os06g08560.1				GO:0005886 - plasma membrane, GO:0005525 - GTP binding		
11964	MRP13	OsABCC13, OsMRP13, OsMRP5	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 13	ABC transporter superfamily ABCC subgroup member 13, multidrug resistance-associated protein 13	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 13		3	OsMRP5 in Zhao et al. 2013 and Xu et al. 2009. LOC_Os03g04920. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character	Os03g0142800	LOC_Os03g04920.1				GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006793 - phosphorus metabolic process, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0000325 - plant-type vacuole, GO:0030007 - cellular potassium ion homeostasis, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0008281 - sulfonylurea receptor activity, GO:0006200 - ATP catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0005774 - vacuolar membrane	TO:0002666 - seed phosphorus content, TO:0000615 - abscisic acid sensitivity	
11965	MRP14	OsABCC14, OsMRP14, OsABCC14-1, OsABCC14-2	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 14	ABC transporter superfamily ABCC subgroup member 14, multidrug resistance-associated protein 14	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 14		5		 Biochemical character	Os05g0196100	LOC_Os05g10730.1, LOC_Os05g10730.2, LOC_Os05g10730.3				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
11966	MRP15	OsABCC15, OsMRP15	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 15	ABC transporter superfamily ABCC subgroup member 15, multidrug resistance-associated protein 15	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 15		6		 Biochemical character	Os06g0158900	LOC_Os06g06440.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005886 - plasma membrane		
11967	MRP16	OsABCC16, OsMRP16	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 16	ABC transporter superfamily ABCC subgroup member 16, multidrug resistance-associated protein 16	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 16		11		 Biochemical character	Os11g0155600	LOC_Os11g05700.1				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process		
11968	MRP17	OsABCC17, OsMRP17	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 17	ABC transporter superfamily ABCC subgroup member 17, multidrug resistance-associated protein 17	MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 17		12		 Biochemical character	Os12g0562700	LOC_Os12g37580.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances		
11969	ABCD1	OsABCD1, OsABCD1_1, OsABCD1_2	ABC TRANSPORTER D FAMILY MEMBER 1	ABC transporter superfamily ABCD subgroup member 1	ABC TRANSPORTER D FAMILY MEMBER 1		1		 Biochemical character	Os01g0218700	LOC_Os01g11946.1, LOC_Os01g11946.2				GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009507 - chloroplast, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process		
11970	ABCD2	OsABCD2	ABC TRANSPORTER D FAMILY MEMBER 2	ABC transporter superfamily ABCD subgroup member 2	ABC TRANSPORTER D FAMILY MEMBER 2		1		 Biochemical character	Os01g0966100	LOC_Os01g73530.1, LOC_Os01g73530.2				GO:0006200 - ATP catabolic process, GO:0010030 - positive regulation of seed germination, GO:0046861 - glyoxysomal membrane, GO:0016887 - ATPase activity, GO:0006635 - fatty acid beta-oxidation, GO:0005524 - ATP binding, GO:0015916 - fatty acyl coenzyme A transport		
11971	GS5	OsSCP26, SCP26, OsGS5	GRAIN SIZE 5	serine carboxypeptidase 26, Grain Size 5	SERINE CARBOXYPEPTIDASE 26	GS5-1, GS5-2, GS5-WG, GS5-MG, GS5-NG, GS5-A, GS5-B	5	JN256055(H94 mRNA), JN256056(Zhenshan 97 mRNA), JN256057(H94 Genomic DNA), JN256058(Zhenshan 97, Genomic DNA). SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Character as QTL - Grain quality,  Biochemical character,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os05g0158500	LOC_Os05g06660.1, LOC_Os05g06660.2				GO:0004185 - serine-type carboxypeptidase activity, GO:0006508 - proteolysis	TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000402 - grain width, TO:0002661 - seed maturation	
11972	ABCD3	OsABCD3	ABC TRANSPORTER D FAMILY MEMBER 3	ABC transporter superfamily ABCD subgroup member 3	ABC TRANSPORTER D FAMILY MEMBER 3		5		 Biochemical character	Os05g0107600	LOC_Os05g01700.1				GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0006635 - fatty acid beta-oxidation, GO:0015916 - fatty acyl coenzyme A transport, GO:0046861 - glyoxysomal membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0010030 - positive regulation of seed germination		
11973	ABCE1	OsABCE1, OsABCE1_1, OsABCE1_2	ABC TRANSPORTER E FAMILY MEMBER 1	ABC transporter superfamily ABCE subgroup member 1	ABC TRANSPORTER E FAMILY MEMBER 1		2		 Biochemical character	Os02g0282900	LOC_Os02g18180.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0009055 - electron carrier activity, GO:0051536 - iron-sulfur cluster binding, GO:0006200 - ATP catabolic process		
11974	ABCE2	OsABCE2, RLI	ABC TRANSPORTER E FAMILY MEMBER 2	ABC transporter superfamily ABCE subgroup member 2, RNase L inhibitor	ABC TRANSPORTER E FAMILY MEMBER 2		11	AY093583.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0546000	LOC_Os11g34350.1				GO:0051536 - iron-sulfur cluster binding, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0009055 - electron carrier activity	TO:0000401 - plant growth hormone sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
11975	ABCF1	OsABCF1, OsABCF1_1, OsABCF1_2, OsABCF1_3	ABC TRANSPORTER F FAMILY MEMBER 1	ABC transporter superfamily ABCF subgroup member 1	ABC TRANSPORTER F FAMILY MEMBER 1		2			Os02g0826500	LOC_Os02g58020.1, LOC_Os02g58020.2, LOC_Os02g58020.3						
11976	ABCF2	OsABCF2	ABC TRANSPORTER F FAMILY MEMBER 2	ABC transporter superfamily ABCF subgroup member 2	ABC TRANSPORTER F FAMILY MEMBER 2		3		 Biochemical character	Os03g0441500	LOC_Os03g32630.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
11977	ABCF3	OsABCF3	ABC TRANSPORTER F FAMILY MEMBER 3	ABC transporter superfamily ABCF subgroup member 3	ABC TRANSPORTER F FAMILY MEMBER 3		4			Os04g0658400	LOC_Os04g56330.1						
11978	ABCF4	OsABCF4	ABC TRANSPORTER F FAMILY MEMBER 4	ABC transporter superfamily ABCF subgroup member 4	ABC TRANSPORTER F FAMILY MEMBER 4		8		 Biochemical character	Os08g0564100	LOC_Os08g45010.1				GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
11979	ABCF5	OsABCF5, OsABCF5_1, OsABCF5_2, OsABCF5_3	ABC TRANSPORTER F FAMILY MEMBER 5	ABC transporter superfamily ABCF subgroup member 5	ABC TRANSPORTER F FAMILY MEMBER 5		9		 Biochemical character	Os09g0572400	LOC_Os09g39910.1, LOC_Os09g39910.2, LOC_Os09g39910.3				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
11980	ABCF6	OsABCF6	ABC TRANSPORTER F FAMILY MEMBER 6	ABC transporter superfamily ABCF subgroup member 6	ABC TRANSPORTER F FAMILY MEMBER 6		11		 Biochemical character	Os11g0603200	LOC_Os11g39020.1				GO:0005524 - ATP binding, GO:0009624 - response to nematode, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process		
11981	ABCG1	OsABCG1	ABC TRANSPORTER G FAMILY MEMBER 1	ABC transporter superfamily ABCG subgroup member 1	ABC TRANSPORTER G FAMILY MEMBER 1		1			Os01g0121600	LOC_Os01g03144.1						
11982	ABCG2	OsABCG2	ABC TRANSPORTER G FAMILY MEMBER 2	ABC transporter superfamily ABCG subgroup member 2	ABC TRANSPORTER G FAMILY MEMBER 2		1		 Biochemical character	Os01g0615500	LOC_Os01g42900.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0016887 - ATPase activity		
11983	ABCG4	OsABCG4, OsABCG22, ABCG22	ABC TRANSPORTER G FAMILY MEMBER 4	ABC transporter superfamily ABCG subgroup member 4	ABC TRANSPORTER G FAMILY MEMBER 4	osabcg22	3	OsABCG22 in Yang et al. 2024. a member of fatty acid metabolic gene cluster on chromosome 3 (FGC3). PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Character as QTL - Yield and productivity	Os03g0157400	LOC_Os03g06139.1				GO:0048437 - floral organ development, GO:0009555 - pollen development, GO:0048658 - tapetal layer development, GO:0048653 - anther development, GO:0048046 - apoplast, GO:0005886 - plasma membrane, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0080051 - cutin transport	TO:0000187 - anther color, TO:0000531 - anther length, TO:0000449 - grain yield per plant, TO:0000218 - pollen abortion type	PO:0009049 - inflorescence , PO:0025385 - cutin , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
11984	ABCG7	OsABCG7, OsABCG7_1, OsABCG7_2	ABC TRANSPORTER G FAMILY MEMBER 7	ABC transporter superfamily ABCG subgroup member 7	ABC TRANSPORTER G FAMILY MEMBER 7		3		 Biochemical character	Os03g0859500	LOC_Os03g64200.1, LOC_Os03g64200.2				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
11985	ABCG8	OsABCG8	ABC TRANSPORTER G FAMILY MEMBER 8	ABC transporter superfamily ABCG subgroup member 8	ABC TRANSPORTER G FAMILY MEMBER 8		4		 Biochemical character	Os04g0194500	LOC_Os04g11820.1				GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
11986	ABCG9	OsABCG9	ABC TRANSPORTER G FAMILY MEMBER 9	ABC transporter superfamily ABCG subgroup member 9	ABC TRANSPORTER G FAMILY MEMBER 9		4		 Biochemical character	Os04g0528300	LOC_Os04g44610.1				GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0080051 - cutin transport, GO:0009897 - external side of plasma membrane, GO:0005524 - ATP binding		
11987	ABCG10	OsABCG10	ABC TRANSPORTER G FAMILY MEMBER 10	ABC transporter superfamily ABCG subgroup member 10	ABC TRANSPORTER G FAMILY MEMBER 10		5		 Biochemical character	Os05g0120000	LOC_Os05g02870.1				GO:0005775 - vacuolar lumen, GO:0005886 - plasma membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0009624 - response to nematode, GO:0016887 - ATPase activity, GO:0007034 - vacuolar transport		
11988	ABCG11	OsABCG11	ABC TRANSPORTER G FAMILY MEMBER 11	ABC transporter superfamily ABCG subgroup member 11	ABC TRANSPORTER G FAMILY MEMBER 11		5		 Biochemical character	Os05g0120200	LOC_Os05g02890.1				GO:0006200 - ATP catabolic process, GO:0005886 - plasma membrane, GO:0009624 - response to nematode, GO:0016887 - ATPase activity, GO:0005775 - vacuolar lumen, GO:0005524 - ATP binding, GO:0007034 - vacuolar transport		
11989	ABCG12	OsABCG12	ABC TRANSPORTER G FAMILY MEMBER 12	ABC transporter superfamily ABCG subgroup member 12	ABC TRANSPORTER G FAMILY MEMBER 12		5	GO:0080167:response to karrikin.	 Biochemical character	Os05g0222200	LOC_Os05g13520.1				GO:0016021 - integral to membrane, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0010025 - wax biosynthetic process		
11990	ABCG13	OsABCG13, OsABCG13_1, OsABCG13_2	ABC TRANSPORTER G FAMILY MEMBER 13	ABC transporter superfamily ABCG subgroup member 13	ABC TRANSPORTER G FAMILY MEMBER 13		5		 Biochemical character	Os05g0384600	LOC_Os05g31910.1, LOC_Os05g31910.2				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process		
11991	ABCG14	OsABCG14	ABC TRANSPORTER G FAMILY MEMBER 14	ABC transporter superfamily ABCG subgroup member 14	ABC TRANSPORTER G FAMILY MEMBER 14		6		 Biochemical character	Os06g0503100	LOC_Os06g30730.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0006200 - ATP catabolic process		
11992	ABCG15	OsABCG15, PDA, PDA1, OsABCG15/PDA1	ABC TRANSPORTER G FAMILY MEMBER 15	ABC transporter superfamily ABCG subgroup member 15, post-meiotic deficient anther1, Postmeiotic Deficient Anther1, ATP binding cassette G15, ATP binding cassette subfamily G 15	ABC TRANSPORTER G FAMILY MEMBER 15	abcg15, pda1, osabcg15	6	TO:1000022: anther morphology trait.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0607700	LOC_Os06g40550.1				GO:0006200 - ATP catabolic process, GO:0006869 - lipid transport, GO:0010584 - pollen exine formation, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0048653 - anther development, GO:0009555 - pollen development	TO:0000215 - stamen anatomy and morphology trait, TO:0000437 - male sterility, TO:0000531 - anther length, TO:0000187 - anther color, TO:0000245 - pollen free	PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0025313 - tapetum 
11993	ABCG16	OsABCG16, OsABCG16_1, OsABCG16_2, OsSTA183	ABC TRANSPORTER G FAMILY MEMBER 16	ABC transporter superfamily ABCG subgroup member 16	ABC TRANSPORTER G FAMILY MEMBER 16		6	LOC_Os06g51460. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os06g0731200	LOC_Os06g51460.1, LOC_Os06g51460.2				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		PO:0009066 - anther 
11994	ABCG17	OsABCG17	ABC TRANSPORTER G FAMILY MEMBER 17	ABC transporter superfamily ABCG subgroup member 17	ABC TRANSPORTER G FAMILY MEMBER 17		7	Similar to white-brown-complex ABC transporter family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0288700	LOC_Os07g18874.1				GO:0009414 - response to water deprivation, GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
11995	ABCG18	OsABCG18	ABC TRANSPORTER G FAMILY MEMBER 18	ABC transporter superfamily ABCG subgroup member 18	ABC TRANSPORTER G FAMILY MEMBER 18		8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0167000	LOC_Os08g07010.1				GO:0006200 - ATP catabolic process, GO:0009651 - response to salt stress, GO:0016887 - ATPase activity, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
11996	ABCG19	OsABCG19, OsABCG19_1, OsABCG19_2	ABC TRANSPORTER G FAMILY MEMBER 19	ABC transporter superfamily ABCG subgroup member 19	ABC TRANSPORTER G FAMILY MEMBER 19		9		 Biochemical character	Os09g0125900	LOC_Os09g03939.1, LOC_Os09g03939.2				GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0017111 - nucleoside-triphosphatase activity		
11997	ABCG20	OsABCG20	ABC TRANSPORTER G FAMILY MEMBER 20	ABC transporter superfamily ABCG subgroup member 20	ABC TRANSPORTER G FAMILY MEMBER 20		9		 Biochemical character	Os09g0250800	LOC_Os09g07670.1, LOC_Os09g07700.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process		
11998	ABCG21	OsABCG21, STR1, OsSTR1	ABC TRANSPORTER G FAMILY MEMBER 21	ABC transporter superfamily ABCG subgroup member 21, Medicago truncatula stunted arbuscule 1	ABC TRANSPORTER G FAMILY MEMBER 21	str1-1, str1-2	9	JN608807. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character,  Vegetative organ - Root	Os09g0401100	LOC_Os09g23640.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0009610 - response to symbiotic fungus, GO:0016020 - membrane		
11999	ABCG22	OsABCG22	ABC TRANSPORTER G FAMILY MEMBER 22	ABC transporter superfamily ABCG subgroup member 22	ABC TRANSPORTER G FAMILY MEMBER 22		9		 Biochemical character	Os09g0472100	LOC_Os09g29660.1				GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
12000	ABCG23	OsABCG23	ABC TRANSPORTER G FAMILY MEMBER 23	ABC transporter superfamily ABCG subgroup member 23	ABC TRANSPORTER G FAMILY MEMBER 23		9		 Biochemical character	Os09g0472200	LOC_Os09g29670.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016020 - membrane		
12001	ABCG24	OsABCG24	ABC TRANSPORTER G FAMILY MEMBER 24	ABC transporter superfamily ABCG subgroup member 24	ABC TRANSPORTER G FAMILY MEMBER 24		10		 Biochemical character	Os10g0163290	LOC_Os10g08014.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016020 - membrane, GO:0016887 - ATPase activity		
12002	ABCG25	OsABCG25, OsABCG25_1, OsABCG25_2	ABC TRANSPORTER G FAMILY MEMBER 25	ABC transporter superfamily ABCG subgroup member 25	ABC TRANSPORTER G FAMILY MEMBER 25		10		 Biochemical character	Os10g0442900	LOC_Os10g30610.1, LOC_Os10g30610.2				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process		
12003	ABCG26	OsABCG26	ABC TRANSPORTER G FAMILY MEMBER 26	ABC transporter superfamily ABCG subgroup member 26, ATP binding cassette transporter G26, ATP Binding Cassette G26	ABC TRANSPORTER G FAMILY MEMBER 26	osabcg26	10		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os10g0494300	LOC_Os10g35180.1				GO:0009408 - response to heat, GO:0006200 - ATP catabolic process, GO:0080051 - cutin transport, GO:0006869 - lipid transport, GO:0005886 - plasma membrane, GO:0010584 - pollen exine formation, GO:0048653 - anther development, GO:0009875 - pollen-pistil interaction, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0009897 - external side of plasma membrane	TO:0000437 - male sterility, TO:0000259 - heat tolerance	PO:0001007 - pollen development stage , PO:0000002 - anther wall , PO:0009029 - stamen , PO:0009066 - anther , PO:0001004 - anther development stage 
12004	ABCG27	OsABCG27	ABC TRANSPORTER G FAMILY MEMBER 27	ABC transporter superfamily ABCG subgroup member 27	ABC TRANSPORTER G FAMILY MEMBER 27		11	GO:0080168:abscisic acid transport.	 Biochemical character	Os11g0177400	LOC_Os11g07600.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus		
12005	ABCG28	OsABCG28, OsSTA255	ABC TRANSPORTER G FAMILY MEMBER 28	ABC transporter superfamily ABCG subgroup member 28	ABC TRANSPORTER G FAMILY MEMBER 28		11	LOC_Os11g22350. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0416900	LOC_Os11g22350.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0005886 - plasma membrane		PO:0009066 - anther 
12006	ABCG29	OsABCG29	ABC TRANSPORTER G FAMILY MEMBER 29	ABC transporter superfamily ABCG subgroup member 29	ABC TRANSPORTER G FAMILY MEMBER 29		12		 Biochemical character	Os12g0409700	LOC_Os12g22110.1				GO:0005886 - plasma membrane, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
12007	ABCG30	OsABCG30	ABC TRANSPORTER G FAMILY MEMBER 30	ABC transporter superfamily ABCG subgroup member 30	ABC TRANSPORTER G FAMILY MEMBER 30		12		 Biochemical character	Os12g0411700	LOC_Os12g22284.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0016020 - membrane		
12008	PDR16	OsABCG32, OsPDR16	PLEIOTROPIC DRUG RESISTANCE 16	ABC transporter superfamily ABCG subgroup member 32, pleiotropic drug resistance 16	PLEIOTROPIC DRUG RESISTANCE 16		1		 Biochemical character	Os01g0342700	LOC_Os01g24010.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0016020 - membrane		
12009	PDR14	OsABCG33, OsPDR14	PLEIOTROPIC DRUG RESISTANCE 14	ABC transporter superfamily ABCG subgroup member 33, pleiotropic drug resistance 14	PLEIOTROPIC DRUG RESISTANCE 14		1	LOC_Os01g33260. Os01g0516800 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character	Os01g0516900 	LOC_Os01g33240.1, LOC_Os01g33260.1				GO:0006200 - ATP catabolic process, GO:0016020 - membrane, GO:0003677 - DNA binding, GO:0016887 - ATPase activity, GO:0005524 - ATP binding		
12010	PDR10	OsABCG34, OsPDR10, OsPDR1	PLEIOTROPIC DRUG RESISTANCE 10	ABC transporter superfamily ABCG subgroup member 34, pleiotropic drug resistance 10, pleiotropic drug resistance 1	PLEIOTROPIC DRUG RESISTANCE 10		1	AJ535045. Q7PC80. BK001015. 	 Biochemical character	Os01g0609000	LOC_Os01g42350.1				GO:0006200 - ATP catabolic process, GO:0006810 - transport, GO:0016887 - ATPase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
12011	PDR11	OsABCG35, OsPDR11, OsPDR2	PLEIOTROPIC DRUG RESISTANCE 11	ABC transporter superfamily ABCG subgroup member 35, pleiotropic drug resistance 11, pleiotropic drug resistance 2	PLEIOTROPIC DRUG RESISTANCE 11		1	Q8GU92. AJ535044. BK001016.	 Biochemical character	Os01g0609200	LOC_Os01g42370.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0006810 - transport		
12012	PDR15	OsABCG38, OsPDR15	PLEIOTROPIC DRUG RESISTANCE 15	ABC transporter superfamily ABCG subgroup member 38, pleiotropic drug resistance 15	PLEIOTROPIC DRUG RESISTANCE 15		1	Q7FMW4. AJ535041.	 Biochemical character	Os01g0724500	LOC_Os01g52560.1				GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
12013	PDR7	OsABCG39, OsPDR7	PLEIOTROPIC DRUG RESISTANCE 7	ABC transporter superfamily ABCG subgroup member 39, pleiotropic drug resistance 7	PLEIOTROPIC DRUG RESISTANCE 7		2	Q8GU88. AJ535048.	 Biochemical character	Os02g0208300	LOC_Os02g11760.1				GO:0016887 - ATPase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0006810 - transport		
12014	PDR4	OsABCG40, ABCG40, OsPDR4	PLEIOTROPIC DRUG RESISTANCE 4	ABC transporter superfamily ABCG subgroup member 40, pleiotropic drug resistance 4	ABC TRANSPORTER SUPERFAMILY ABCG SUBGROUP MEMBER 40		2		 Biochemical character	Os02g0318500	LOC_Os02g21340.1				GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
12015	PDR2	ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2	PLEIOTROPIC DRUG RESISTANCE 2	ABC transporter superfamily ABCG subgroup member 41, pleiotropic drug resistance 2	PLEIOTROPIC DRUG RESISTANCE 2		2	LOC_Os02g32690. AJ535053.	 Biochemical character	Os02g0528900	LOC_Os02g32690.1, LOC_Os02g32690.2				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
12016	PDR12	OsABCG42, ABCG42, OsPDR12, OsABCG42_1, OsABCG42_2	PLEIOTROPIC DRUG RESISTANCE 12	ABC transporter superfamily ABCG subgroup member 42, pleiotropic drug resistance 12	PLEIOTROPIC DRUG RESISTANCE 12		6	Q5Z9S8. AJ535043.	 Biochemical character	Os06g0554800	LOC_Os06g36090.1, LOC_Os06g36090.2				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0016887 - ATPase activity		
12017	PDR17	OsABCG44, OsPDR17	PLEIOTROPIC DRUG RESISTANCE 17	ABC transporter superfamily ABCG subgroup member 44, pleiotropic drug resistance 17	PLEIOTROPIC DRUG RESISTANCE 17		8		 Biochemical character	Os08g0384500	LOC_Os08g29570.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0016020 - membrane		
12018	PDR1	OsABCG45, OsPDR1, FCO1, OsPDR1.2, OsPDR1.3, OsPDR1.1	PLEIOTROPIC DRUG RESISTANCE 1	ABC transporter superfamily ABCG subgroup member 45, pleiotropic drug resistance 1, Functioning in Cesium Over-transport 1	PLEIOTROPIC DRUG RESISTANCE 1		8	AJ535054.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity	Os08g0544400	LOC_Os08g43120.1				GO:0006200 - ATP catabolic process, GO:0006810 - transport, GO:0009753 - response to jasmonic acid stimulus, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0016887 - ATPase activity, GO:0030001 - metal ion transport, GO:0006952 - defense response	TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000396 - grain yield, TO:0000112 - disease resistance, TO:0000357 - growth and development trait	PO:0009005 - root 
12019	PDR21	OsABCG46, OsPDR21	PLEIOTROPIC DRUG RESISTANCE 21	ABC transporter superfamily ABCG subgroup member 46, pleiotropic drug resistance 21	PLEIOTROPIC DRUG RESISTANCE 21		9	C7J6G6. LOC_Os09g16290. Os09g0332360 (in Rap2 (build4)).	 Biochemical character	Os09g0332300 	LOC_Os09g16290.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006810 - transport		
12020	PDR19	OsABCG47, OsPDR19	PLEIOTROPIC DRUG RESISTANCE 19	ABC transporter superfamily ABCG subgroup member 47, pleiotropic drug resistance 19	PLEIOTROPIC DRUG RESISTANCE 19		9	GO:0080168:abscisic acid transport.	 Biochemical character	Os09g0333000	LOC_Os09g16380.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0010193 - response to ozone, GO:0006200 - ATP catabolic process, GO:0015692 - lead ion transport, GO:0005886 - plasma membrane		
12021	PDR3	OsABCG48, OsPDR3	PLEIOTROPIC DRUG RESISTANCE 3	ABC transporter superfamily ABCG subgroup member 48, pleiotropic drug resistance 3	PLEIOTROPIC DRUG RESISTANCE 3		11	AJ535052.	 Biochemical character	Os11g0587600	LOC_Os11g37700.1				GO:0016887 - ATPase activity, GO:0016020 - membrane, GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding		
12022	PDR22	OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2	PLEIOTROPIC DRUG RESISTANCE 22	ABC transporter superfamily ABCG subgroup member 49, pleiotropic drug resistance 22	PLEIOTROPIC DRUG RESISTANCE 22		12	LOC_Os12g13720. Q2QV81.		Os12g0239900	LOC_Os12g13720.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005886 - plasma membrane		
12023	PDR23	OsABCG50, OsPDR23, OsABCG50_1, OsABCG50_2	PLEIOTROPIC DRUG RESISTANCE 23	ABC transporter superfamily ABCG subgroup member 50, pleiotropic drug resistance 23	PLEIOTROPIC DRUG RESISTANCE 23		12		 Biochemical character	Os12g0512700	LOC_Os12g32820.1, LOC_Os12g32820.2				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0016020 - membrane		
12024	ABCI1	OsABCI1	ABC TRANSPORTER I FAMILY MEMBER 1	ABC transporter superfamily ABCI subgroup member 1	ABC TRANSPORTER I FAMILY MEMBER 1		4		 Biochemical character	Os04g0627200	LOC_Os04g53550.1				GO:0005215 - transporter activity, GO:0006810 - transport, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0030288 - outer membrane-bounded periplasmic space, GO:0005524 - ATP binding, GO:0017004 - cytochrome complex assembly		
12025	ABCI2	OsABCI2	ABC TRANSPORTER I FAMILY MEMBER 2	ABC transporter superfamily ABCI subgroup member 2	ABC TRANSPORTER I FAMILY MEMBER 2		Mt	LOC_Osm1g00200.1	 Biochemical character		LOC_Osm1g00200				GO:0008535 - respiratory chain complex IV assembly, GO:0017004 - cytochrome complex assembly, GO:0015232 - heme transporter activity, GO:0016020 - membrane, GO:0005739 - mitochondrion		
12026	ABCI3	OsABCI3	ABC TRANSPORTER I FAMILY MEMBER 3	ABC transporter superfamily ABCI subgroup member 3	ABC TRANSPORTER I FAMILY MEMBER 3		12	CCM subgroup. LOC_Os12g34010. Os12g0523900 (not found in RapDB, Ncbi and UniProt).	 Biochemical character		LOC_Os12g34010				GO:0016020 - membrane, GO:0017004 - cytochrome complex assembly, GO:0015232 - heme transporter activity, GO:0008535 - respiratory chain complex IV assembly		
12027	ABCI3_1	OsABCI3_1, OsABCI3_2, OsISC17	ABC TRANSPORTER I FAMILY MEMBER 3_1	ABC transporter superfamily ABCI subgroup member 3_1, Iron-sulfur cluster protein 17	ABC TRANSPORTER I FAMILY MEMBER 3_1		3	subgroup ISB.	 Biochemical character	Os03g0332700	LOC_Os03g21490.1, LOC_Os03g21490.2				GO:0016226 - iron-sulfur cluster assembly, GO:0006200 - ATP catabolic process, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0009793 - embryonic development ending in seed dormancy, GO:0010027 - thylakoid membrane organization, GO:0005524 - ATP binding, GO:0009570 - chloroplast stroma		
12028	ABCI4	OsABCI4, OsISC18	ABC TRANSPORTER I FAMILY MEMBER 4	ABC transporter superfamily ABCI subgroup member 4, Iron-sulfur cluster protein 18	ABC TRANSPORTER I FAMILY MEMBER 4		1		 Biochemical character	Os01g0127300	LOC_Os01g03650.1				GO:0009793 - embryonic development ending in seed dormancy, GO:0016226 - iron-sulfur cluster assembly, GO:0009507 - chloroplast, GO:0010027 - thylakoid membrane organization		
12029	ABCI5	OsABCI5, OsISC16	ABC TRANSPORTER I FAMILY MEMBER 5	ABC transporter superfamily ABCI subgroup member 5, Iron-sulfur cluster protein 16	ABC TRANSPORTER I FAMILY MEMBER 5		1		 Biochemical character	Os01g0830000	LOC_Os01g61400.1				GO:0006879 - cellular iron ion homeostasis, GO:0016226 - iron-sulfur cluster assembly, GO:0009507 - chloroplast, GO:2000030 - regulation of response to red or far red light		
12030	ABCI6	OsABCI6, OsABCI7, ABCI7	ABC TRANSPORTER I FAMILY MEMBER 6	ABC transporter superfamily ABCI subgroup member 6	ABC TRANSPORTER I FAMILY MEMBER 6		1	OsABCI7 in Zeng et al. 2017, Li et al. 2020. GO:0035444: nickel cation transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0770500	LOC_Os01g56400.1				GO:0015087 - cobalt ion transmembrane transporter activity, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0009941 - chloroplast envelope, GO:0015675 - nickel ion transport, GO:0006824 - cobalt ion transport		
12031	TSC1	ABCI7, OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2, OsCNL1, CNL1, OsTSC1, TSC1.1, TSC1.2	TRANSPLANT-SENSITIVE CHLOROPLAST-DEFICIENT 1	ABC transporter superfamily ABCI subgroup member 7, chlorotic and necrotic leaf1, transplant-sensitive chloroplast-deficient 1	ABC TRANSPORTER I FAMILY MEMBER 7	abci8, cnl1, tsc1	11	OsABCI8 in Zeng et al. 2017, Li et al. 2020. TO:0020089: iron content. TO:0006060: copper content trait. leaf chlorosis. GO:2000377: regulation of reactive oxygen species metabolic process.	 Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os11g0490800	LOC_Os11g29850.1, LOC_Os11g29850.2				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization, GO:0009657 - plastid organization, GO:0009628 - response to abiotic stimulus, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0006826 - iron ion transport, GO:0070265 - necrotic cell death, GO:0015979 - photosynthesis, GO:0055072 - iron ion homeostasis, GO:0033013 - tetrapyrrole metabolic process, GO:0009642 - response to light intensity, GO:0055070 - copper ion homeostasis, GO:0055065 - metal ion homeostasis, GO:0009646 - response to absence of light, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0042651 - thylakoid membrane, GO:0009826 - unidimensional cell growth, GO:0046466 - membrane lipid catabolic process, GO:0006974 - response to DNA damage stimulus, GO:0006281 - DNA repair, GO:0006260 - DNA replication, GO:0012501 - programmed cell death, GO:0015995 - chlorophyll biosynthetic process	TO:0000316 - photosynthetic ability, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0002715 - chloroplast development trait, TO:0000168 - abiotic stress trait, TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000145 - internode length, TO:0001018 - transpiration rate, TO:0001027 - net photosynthetic rate, TO:0000303 - cold tolerance, TO:0000652 - leaf necrosis	PO:0000003 - whole plant , PO:0025034 - leaf 
12032	ARG1 	ABCI8, OsABCI8, OsABCI9, ABCI9, OsARG1	ALBINO-REVERTIBLE GREEN 1	ABC transporter superfamily ABCI subgroup member 8, albino-revertible green 1	ABC TRANSPORTER I FAMILY MEMBER 8	arg1, ARG1tej, ARG1ind	5	the NCBI BioProject under the accession no. PRJNA510168. OsABCI9 in Zeng et al. 2017. GO:0035784: nickel cation homeostasis. TO:0006060: leaf chlorosis.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os05g0400600	LOC_Os05g33230.1				GO:0009941 - chloroplast envelope, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0015675 - nickel ion transport, GO:0006824 - cobalt ion transport, GO:0055068 - cobalt ion homeostasis, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane	TO:0000495 - chlorophyll content, TO:0000056 - stem color, TO:0000316 - photosynthetic ability, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000207 - plant height	
12033	ABCI9	OsABCI9, OsABCI9_1, OsABCI9_2	ABC TRANSPORTER I FAMILY MEMBER 9	ABC transporter superfamily ABCI subgroup member 9	ABC TRANSPORTER I FAMILY MEMBER 9		3		 Biochemical character	Os03g0670100	LOC_Os03g46740.1, LOC_Os03g46740.2				GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity, GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0006869 - lipid transport		
12034	ESG1	ABCI10, OsABCI10, OsABCI10_1, OsABCI10_2, OsESG1	ENLARGED STARCH GRAIN 1	ABC transporter superfamily ABCI subgroup member 10, enlarged starch grain1	ABC TRANSPORTER I FAMILY MEMBER 10	esg1	4	a putative permease subunit of a bacterial-type ABC (ATP-binding cassette) lipid transporter.	 Character as QTL - Yield and productivity,  Seed - Physiological traits,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os04g0553000	LOC_Os04g46700.1, LOC_Os04g46700.2				GO:0019375 - galactolipid biosynthetic process, GO:0048316 - seed development, GO:0009960 - endosperm development, GO:0019252 - starch biosynthetic process, GO:0009660 - amyloplast organization, GO:0033097 - amyloplast membrane, GO:0031969 - chloroplast membrane, GO:0009707 - chloroplast outer membrane, GO:0006869 - lipid transport, GO:0009414 - response to water deprivation	TO:0000592 - 1000-dehulled grain weight, TO:0000104 - floury endosperm, TO:0000276 - drought tolerance, TO:0000696 - starch content, TO:0000653 - seed development trait, TO:0000162 - seed quality, TO:0002655 - starch grain size	PO:0001170 - seed development stage 
12035	ABCI11	OsABCI11	ABC TRANSPORTER I FAMILY MEMBER 11	ABC transporter superfamily ABCI subgroup member 11	ABC TRANSPORTER I FAMILY MEMBER 11		1		 Biochemical character	Os01g0974000	LOC_Os01g74280.1				GO:0005543 - phospholipid binding, GO:0005319 - lipid transporter activity, GO:0009706 - chloroplast inner membrane		
12036	ABCI13	OsABCI13	ABC TRANSPORTER I FAMILY MEMBER 13	ABC transporter superfamily ABCI subgroup member 13	ABC TRANSPORTER I FAMILY MEMBER 13		1			Os01g0614700	LOC_Os01g42830.1				GO:0016020 - membrane, GO:0006897 - endocytosis		
12037	ABCI14	OsABCI14	ABC TRANSPORTER I FAMILY MEMBER 14	ABC transporter superfamily ABCI subgroup member 14	ABC TRANSPORTER I FAMILY MEMBER 14		2		 Biochemical character	Os02g0810300	LOC_Os02g56550.1				GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0010218 - response to far red light, GO:0010114 - response to red light, GO:0016887 - ATPase activity		
12038	ABCI15	OsABCI15	ABC TRANSPORTER I FAMILY MEMBER 15	ABC transporter superfamily ABCI subgroup member 15	ABC TRANSPORTER I FAMILY MEMBER 15		3	GO:0080167:response to karrikin.	 Biochemical character	Os03g0316900	LOC_Os03g20170.1				GO:0006200 - ATP catabolic process, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
12039	ABCI16	OsABCI16, OsABCI16_1, OsABCI16_2	ABC TRANSPORTER I FAMILY MEMBER 16	ABC transporter superfamily ABCI subgroup member 16	ABC TRANSPORTER I FAMILY MEMBER 16		10			Os10g0476000	LOC_Os10g33630.1, LOC_Os10g33630.2				GO:0006897 - endocytosis, GO:0016020 - membrane		
12040	_	OsPDR20, RDR20	_				9		 Biochemical character	Os09g0332700	LOC_Os09g16330.1, LOC_Os09g16330.2				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process		
12042	RBCS1	RbcS1, OsRBCS1, OsRbcS1	RUBISCO SMALL SUBUNIT 1	RuBisCO small subunit 1, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 1, ribulose bisphosphate carboxylase small chain 1	RUBISCO SMALL SUBUNIT 1		2		 Biochemical character	Os02g0152400	LOC_Os02g05830.2, LOC_Os02g05830.1				GO:0004497 - monooxygenase activity, GO:0015979 - photosynthesis, GO:0009853 - photorespiration, GO:0009536 - plastid, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0016984 - ribulose-bisphosphate carboxylase activity		
12043	RBCS3	RbcS3, OsRBCS3, OsRbcS3, rbcS	RUBISCO SMALL SUBUNIT 3	RuBisCO small subunit 3, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 3	RUBISCO SMALL SUBUNIT 3		12	P18566. D00644. AY445627.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0291100	LOC_Os12g19381.1				GO:0009853 - photorespiration, GO:0005507 - copper ion binding, GO:0009570 - chloroplast stroma, GO:0009535 - chloroplast thylakoid membrane, GO:0022626 - cytosolic ribosome, GO:0048046 - apoplast, GO:0031977 - thylakoid lumen, GO:0004497 - monooxygenase activity, GO:0019253 - reductive pentose-phosphate cycle, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0009637 - response to blue light, GO:0010218 - response to far red light, GO:0010114 - response to red light, GO:0009941 - chloroplast envelope, GO:0005618 - cell wall, GO:0009409 - response to cold, GO:0010332 - response to gamma radiation	TO:0000158 - red light sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000159 - blue light sensitivity	
12044	RBCS5	RbcS5, OsRBCS5, OsRbcS5, RbcS3, OsRbcS3	RUBISCO SMALL SUBUNIT 5	RuBisCO small subunit 5, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5	RUBISCO SMALL SUBUNIT 5		12	RbcS3 in Fan et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os12g0291400	LOC_Os12g19381.1				GO:0048046 - apoplast, GO:0009570 - chloroplast stroma, GO:0009637 - response to blue light, GO:0009853 - photorespiration, GO:0004497 - monooxygenase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0005507 - copper ion binding, GO:0005618 - cell wall, GO:0009941 - chloroplast envelope, GO:0010114 - response to red light, GO:0010218 - response to far red light, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0022626 - cytosolic ribosome, GO:0009409 - response to cold, GO:0031977 - thylakoid lumen, GO:0015977 - carbon utilization by fixation of carbon dioxide	TO:0000396 - grain yield, TO:0000319 - rubisco content, TO:0000316 - photosynthetic ability, TO:0000457 - total biomass yield, TO:0000011 - nitrogen sensitivity	
12045	CYP97A4	CYP97A4, OsCYP97A4	P-450 97A4	Cytochrome P450 97A4, Carotenoid beta-Ring Hydroxylase CYP97A4	CYTOCHROME P450 97A4	cyp97a4, cyp97a4-1, cyp97a4-2, cyp97a4-3	2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0817900	LOC_Os02g57290.1, LOC_Os02g57290.2, LOC_Os02g57290.3, LOC_Os02g57290.4				GO:0016123 - xanthophyll biosynthetic process, GO:0010291 - carotene beta-ring hydroxylase activity, GO:0009507 - chloroplast, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
12046	CYP97C2	OsCYP97C2	P-450 97C2	Cytochrome P450 97C2	CYTOCHROME P450 97C2		10		 Biochemical character	Os10g0546600	LOC_Os10g39930.2, LOC_Os10g39930.1				GO:0009941 - chloroplast envelope, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0009974 - epsilon hydroxylase activity, GO:0016117 - carotenoid biosynthetic process		
12047	CYP97B4	CYP97B4, CYP97B4a	P-450 97B4	Cytochrome P450 97B4	CYTOCHROME P450 97B4		2		 Biochemical character	Os02g0173100	LOC_Os02g07680.1, LOC_Os02g07680.2, LOC_Os02g07680.3, LOC_Os02g07680.4, LOC_Os02g07680.5				GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
12048	PFK6	OsPFK06, PFK06	PHOSPHOFRUCTOKINASE 6	6-phosphofructokinase plastid isozyme, PFK plastid isozyme, phosphofructokinase 6	PHOSPHOFRUCTOKINASE 6		6	group A phosphofructokinase (PKF_A). 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0151900	LOC_Os06g05860.1				GO:0005829 - cytosol, GO:0009536 - plastid, GO:0034059 - response to anoxia, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005945 - 6-phosphofructokinase complex, GO:0006096 - glycolysis, GO:0006002 - fructose 6-phosphate metabolic process, GO:0003872 - 6-phosphofructokinase activity, GO:0046872 - metal ion binding	TO:0000482 - chemical stress sensitivity	
12049	PFPA3	OsPFPA3, OsPFP1a3, PFP1a3, PFP-ALPHA, OsPFP-ALPHA	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 3	pyrophosphate-dependent phosphofrucokinase alpha-subunit, PFP alpha-subunit, pyrophosphate-fructose-6-phosphatephosphotransferase alpha subunit 3, PFP-alpha subunit 3, catalytic a-subunit 3 of PFP1	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 3		8	BGIOSGA028505.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0345700	LOC_Os08g25720.1				GO:0005737 - cytoplasm, GO:0034058 - endosomal vesicle fusion, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity, GO:0005829 - cytosol, GO:0003872 - 6-phosphofructokinase activity, GO:0046872 - metal ion binding, GO:0006096 - glycolysis, GO:0005524 - ATP binding, GO:0005945 - 6-phosphofructokinase complex	TO:0000482 - chemical stress sensitivity	
12050	PFPB	OsPFPB, OsPFP-B, PFP-B, PFPbeta	PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCOKINASE BETA-SUBUNIT	pyrophosphate-dependent phosphofrucokinase beta-subunit, PFP beta-subunit, Pyrophosphate-Fru-6-P1-phosphotransferase, Pyrophosphate: fructose-6-phosphate 1-phosphotransferase beta subunit, PFP beta subunit, PFPase beta subunit, regulatory b-subunit of PFP1, Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit	PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCOKINASE BETA-SUBUNIT	pfp1-1, pp1-2, pfp1-3, pfp2	6	D17765. PO:0000620: plant embryo development stage. GO:2000014: regulation of endosperm development.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances	Os06g0247500	LOC_Os06g13810.3, LOC_Os06g13810.1				GO:0080050 - regulation of seed development, GO:0034059 - response to anoxia, GO:0010581 - regulation of starch biosynthetic process, GO:0009790 - embryonic development, GO:0009960 - endosperm development, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005945 - 6-phosphofructokinase complex, GO:0005618 - cell wall, GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0046872 - metal ion binding, GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0015979 - photosynthesis, GO:0009793 - embryonic development ending in seed dormancy, GO:0006096 - glycolysis, GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity	TO:0000602 - total fat content, TO:0000598 - protein content, TO:0000300 - glucose content, TO:0000482 - chemical stress sensitivity, TO:0006005 - fructose content, TO:0000620 - embryo development trait, TO:0000449 - grain yield per plant, TO:0000590 - grain weight, TO:0000399 - grain thickness, TO:0000328 - sucrose content, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000592 - 1000-dehulled grain weight, TO:0000713 - brittle endosperm, TO:0000390 - grain core percent white, TO:0000696 - starch content, TO:0000382 - 1000-seed weight, TO:0002658 - starch grain synthesis, TO:0000104 - floury endosperm, TO:0002661 - seed maturation, TO:0002655 - starch grain size, TO:0002656 - starch grain shape	PO:0009089 - endosperm 
12051	STR1	OsStr1	SULFURTRANSFERASE 1	Sulfurtransferase 1	SULFURTRANSFERASE 1		2			Os02g0596000	LOC_Os02g38240.1				GO:0009507 - chloroplast		
12052	STR2	OsStr2	SULFURTRANSFERASE 2	Sulfurtransferase 2	SULFURTRANSFERASE 2		3			Os03g0289400	LOC_Os03g18020.1						
12053	STR3	OsStr3	SULFURTRANSFERASE 3	Sulfurtransferase 3	SULFURTRANSFERASE 3		9			Os09g0279400	LOC_Os09g10750.1				GO:0009535 - chloroplast thylakoid membrane		
12054	STR4	OsStr4	SULFURTRANSFERASE 4	Sulfurtransferase 4	SULFURTRANSFERASE 4		9			Os09g0530000	LOC_Os09g36040.1				GO:0009535 - chloroplast thylakoid membrane		
12055	HAC1;1 	OsStr5, STR5, OsHAC1;1	HIGH AS CONTENT 1;1	Sulfurtransferase 5, High As Content 1;1, high arsenate content 1	SULFURTRANSFERASE 5		2	TO:0006054: arsenic concentration. similar to SAG. TO:1000026: root system arsenic content.	 Tolerance and resistance - Stress tolerance	Os02g0102300 	LOC_Os02g01220.1				GO:0046685 - response to arsenic, GO:0030611 - arsenate reductase activity, GO:0005737 - cytoplasm, GO:0015700 - arsenite transport, GO:0005634 - nucleus, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000465 - mineral and ion content related trait	PO:0000256 - root hair cell , PO:0009006 - shoot system , PO:0025261 - pericycle cell , PO:0005679 - epidermis 
12056	HAC1;2	OsStr6, STR6, OsRhST, RLD, OsHAC1;2	HIGH AS CONTENT 1;2	Sulfurtransferase 6, rhodanese-related sulfurtransferase, rhodanese-like domain-containing protein, High As Content 1;2, high arsenate content 2	SULFURTRANSFERASE 6		4	senescence-associated protein DIN1-like gene. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance	Os04g0249600	LOC_Os04g17660.3, LOC_Os04g17660.1, LOC_Os04g17660.2				GO:0009414 - response to water deprivation, GO:0015700 - arsenite transport, GO:0005737 - cytoplasm, GO:0046685 - response to arsenic, GO:0030611 - arsenate reductase activity, GO:0005634 - nucleus	TO:0000167 - cytokinin sensitivity, TO:0000465 - mineral and ion content related trait, TO:0000276 - drought tolerance	PO:0005679 - epidermis , PO:0005708 - cortex , PO:0009006 - shoot system , PO:0000252 - endodermis 
12057	STR7	OsStr7	SULFURTRANSFERASE 7	Sulfurtransferase 7, Rhodanese like domain containing protein	SULFURTRANSFERASE 7		12	LOC_Os12g24020.		Os12g0428000 	LOC_Os12g24020.1, LOC_Os12g24020.2, LOC_Os12g24020.3				GO:0051726 - regulation of cell cycle		
12058	HAC4	OsStr8, STR8, OsHAC4	HIGH AS CONTENT 4	Sulfurtransferase 8, High As Content 4	SULFURTRANSFERASE 8	Oshac4	2	rhodanase-like protein. TO:0006054: arsenic concentration. GO:0071722: detoxification of arsenic-containing substance. GO:1901684: arsenate ion transmembrane transport. TO:1000026: root system arsenic content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0157600	LOC_Os02g06290.1, LOC_Os02g06290.2				GO:0046688 - response to copper ion, GO:0008794 - arsenate reductase (glutaredoxin) activity, GO:0005634 - nucleus, GO:0046685 - response to arsenic, GO:0005737 - cytoplasm	TO:0000021 - copper sensitivity	PO:0006036 - root epidermis , PO:0005772 - exodermis 
12059	STR9	OsStr9	SULFURTRANSFERASE 9	Sulfurtransferase 9	SULFURTRANSFERASE 9		6		 Biochemical character	Os06g0725000	LOC_Os06g50930.1, LOC_Os06g50930.2				GO:0009611 - response to wounding, GO:0009507 - chloroplast, GO:0009753 - response to jasmonic acid stimulus, GO:0006979 - response to oxidative stress, GO:0004792 - thiosulfate sulfurtransferase activity		
12060	STR10	OsStr10	SULFURTRANSFERASE 10	Sulfurtransferase 10	SULFURTRANSFERASE 10		1			Os01g0896500	LOC_Os01g67120.1, LOC_Os01g67120.2						
12061	STR11	OsStr11, OsCAS, Cas	SULFURTRANSFERASE 11	Sulfurtransferase 11, Calcium-Sensing Receptor	SULFURTRANSFERASE 11		2	GO:0090333:regulation of stomatal closure. a homolog of Arabidopsis calcium-sensing receptor (CaS).	 Tolerance and resistance - Stress tolerance	Os02g0729400	LOC_Os02g49680.1				GO:0031408 - oxylipin biosynthetic process, GO:0071277 - cellular response to calcium ion, GO:0005739 - mitochondrion, GO:0009535 - chloroplast thylakoid membrane, GO:0019252 - starch biosynthetic process, GO:0006364 - rRNA processing, GO:0010114 - response to red light, GO:0010218 - response to far red light, GO:0009637 - response to blue light, GO:0019216 - regulation of lipid metabolic process, GO:0043085 - positive regulation of catalytic activity, GO:0009657 - plastid organization, GO:0010207 - photosystem II assembly, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0015994 - chlorophyll metabolic process, GO:0019344 - cysteine biosynthetic process, GO:0009704 - de-etiolation, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0000023 - maltose metabolic process, GO:0006098 - pentose-phosphate shunt, GO:0009414 - response to water deprivation, GO:0009534 - chloroplast thylakoid, GO:0006636 - unsaturated fatty acid biosynthetic process	TO:0000276 - drought tolerance	
12062	STR12	OsStr12, Str12, TROL, Os-TROL, OsTROL	SULFURTRANSFERASE 12	Sulfurtransferase 12	SULFURTRANSFERASE 12		2	BF889464. LOC_Os02g15750.	 Tolerance and resistance - Disease resistance	Os02g0257300	LOC_Os02g15750.1				GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease	
12063	STR13	OsStr13	SULFURTRANSFERASE 13	Sulfurtransferase 13	SULFURTRANSFERASE 13		1			Os01g0889800	LOC_Os01g66600.1, LOC_Os01g66600.2						
12064	STR14	OsStr14	SULFURTRANSFERASE 14	Sulfurtransferase 14	SULFURTRANSFERASE 14		2		 Biochemical character	Os02g0525400 	LOC_Os02g32460.1				GO:0005524 - ATP binding, GO:0016740 - transferase activity		
12065	STR15	OsStr15	SULFURTRANSFERASE 15	Sulfurtransferase 15	SULFURTRANSFERASE 15		2	A3ACF3.	 Biochemical character	Os02g0804600	LOC_Os02g56050.1, LOC_Os02g56080.1				GO:0005829 - cytosol, GO:0016740 - transferase activity, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0008033 - tRNA processing, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
12066	STR16	OsStr16	SULFURTRANSFERASE 16	Sulfurtransferase 16	SULFURTRANSFERASE 16		7		 Biochemical character	Os07g0687500	LOC_Os07g48810.1, LOC_Os07g48810.2				GO:0016853 - isomerase activity, GO:0009507 - chloroplast		
12067	STR17	OsStr17	SULFURTRANSFERASE 17	Sulfurtransferase 17	SULFURTRANSFERASE 17		5			Os05g0323100	LOC_Os05g25780.1						
12068	STR18	OsStr18	SULFURTRANSFERASE 18	Sulfurtransferase 18	SULFURTRANSFERASE 18		12			Os12g0563400	LOC_Os12g37630.1, LOC_Os12g37630.2						
12069	STR19	OsStr19, OsPP126	SULFURTRANSFERASE 19	Sulfurtransferase 19, Protein phosphatase 126	SULFURTRANSFERASE 19		12	LOC_Os12g05660.		Os12g0152800	LOC_Os12g05660.1, LOC_Os12g05660.2, LOC_Os12g05660.3, LOC_Os12g05660.4						
12072	STR22	OsStr22	SULFURTRANSFERASE 22	Sulfurtransferase 22	SULFURTRANSFERASE 22		12		 Biochemical character	Os12g0608600	LOC_Os12g41500.1				GO:0005829 - cytosol, GO:0004792 - thiosulfate sulfurtransferase activity, GO:0016784 - 3-mercaptopyruvate sulfurtransferase activity, GO:0005739 - mitochondrion, GO:0009507 - chloroplast		
12073	STR23	OsStr23	SULFURTRANSFERASE 23	Sulfurtransferase 23	SULFURTRANSFERASE 23		2		 Biochemical character	Os02g0167100 	LOC_Os02g07044.1, LOC_Os02g07044.2				GO:0004792 - thiosulfate sulfurtransferase activity		
12074	STR24	OsStr24	SULFURTRANSFERASE 24	Sulfurtransferase 24	SULFURTRANSFERASE 24		3	(Q7Y1E2)									
12075	BGLU1	Os1bglu1, Os1Bglu1	BETA-GLUCOSIDASE 1	beta-glucosidase 1	BETA-GLUCOSIDASE 1		1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q5QMT0. BAD73293.	 Biochemical character	Os01g0508000	LOC_Os01g32364.1				GO:0080082 - esculin beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0022626 - cytosolic ribosome, GO:0080079 - cellobiose glucosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0009505 - plant-type cell wall		
12076	BGLU2	Os1bglu2, Os1Bglu2	BETA-GLUCOSIDASE 2	beta-glucosidase 2	BETA-GLUCOSIDASE 2		1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7F8N7.	 Biochemical character	Os01g0813700	LOC_Os01g59819.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12077	BGLU3	Os1bglu3, Os1Bglu3	BETA-GLUCOSIDASE 3	beta-glucosidase 3	BETA-GLUCOSIDASE 3		1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q8RZL1.	 Biochemical character	Os01g0813800	LOC_Os01g59840.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12078	BH1	BGLU4, Os1bglu4, Os1Bglu4, Os1BGlu4, OsBH1	BROWN HULL 1	beta-glucosidase 4, brown hull 1	BETA-GLUCOSIDASE 4	bh1	1	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD82183, BAD82346. Q5N863. PO:0030123: panicle inflorescence. TO:0001079: caryopsis fruit morphology trait. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Coloration - Chlorophyll,  Coloration - Anthocyanin,  Reproductive organ - panicle,  Character as QTL - Yield and productivity	Os01g0897600	LOC_Os01g67220.1, LOC_Os01g67220.2, LOC_Os01g67220.3				GO:0043067 - regulation of programmed cell death, GO:0008422 - beta-glucosidase activity, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005975 - carbohydrate metabolic process, GO:0005737 - cytoplasm	TO:0000328 - sucrose content, TO:0001027 - net photosynthetic rate, TO:0000340 - total soluble sugar content, TO:0000447 - filled grain number, TO:0000605 - hydrogen peroxide content, TO:0000071 - anthocyanin content, TO:0000295 - chlorophyll-b content, TO:0000734 - grain length, TO:0000455 - seed set percent, TO:0000259 - heat tolerance, TO:0000293 - chlorophyll-a content, TO:0000201 - panicle color, TO:0000290 - flavonoid content, TO:0000706 - hull color, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0001015 - photosynthetic rate	PO:0009005 - root , PO:0009051 - spikelet , PO:0009049 - inflorescence 
12079	BGLU5	Os1bglu5, Os1Bglu5, 1bglu5	BETA-GLUCOSIDASE 5	beta-glucosidase 5	BETA-GLUCOSIDASE 5		1	LOC_Os01g70520. Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD87322, BAD88178. Q5JK35. GO:0102483: scopolin beta-glucosidase activity. GO:1901657: glycosyl compound metabolic process.	 Biochemical character,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0930800	LOC_Os01g70520.1, LOC_Os01g70520.2				GO:0048573 - photoperiodism, flowering, GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process	TO:0000485 - sterility related trait, TO:0000137 - days to heading	
12080	BGLU6	Os3bglu6, Os3BGlu6, 3BGlu6	BETA-GLUCOSIDASE 6	beta-glucosidase 6	BETA-GLUCOSIDASE 6		3	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AY129294. Q8L7J2. PDB accession 3GNO.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0212800	LOC_Os03g11420.1				GO:0005975 - carbohydrate metabolic process, GO:0080079 - cellobiose glucosidase activity, GO:0048046 - apoplast, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0009651 - response to salt stress, GO:0004565 - beta-galactosidase activity, GO:0046872 - metal ion binding, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0033907 - beta-D-fucosidase activity, GO:0009507 - chloroplast	TO:0006001 - salt tolerance	
12081	BGLU7	Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1	BETA-GLUCOSIDASE 7	beta-glucosidase 7	BETA-GLUCOSIDASE 7		3	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAX95519, AAS07254. Q75I93.  bglu1 in Opassiri et al. 2003.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0703000	LOC_Os03g49600.1, LOC_Os03g49600.2, LOC_Os03g49600.3, LOC_Os03g49600.4, LOC_Os03g49600.5				GO:0008270 - zinc ion binding, GO:0047701 - beta-L-arabinosidase activity, GO:0050224 - prunasin beta-glucosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0009635 - response to herbicide, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0004567 - beta-mannosidase activity, GO:0004565 - beta-galactosidase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0033907 - beta-D-fucosidase activity, GO:0009505 - plant-type cell wall, GO:0022626 - cytosolic ribosome	TO:0000058 - herbicide sensitivity	
12082	BGLU8	Os3bglu8, Os3BGlu8	BETA-GLUCOSIDASE 8	beta-glucosidase 8	BETA-GLUCOSIDASE 8		3	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAX95520, AAS07251. Q75I94.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0703100	LOC_Os03g49610.1				GO:0009408 - response to heat, GO:0004567 - beta-mannosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0047701 - beta-L-arabinosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0033907 - beta-D-fucosidase activity, GO:0022626 - cytosolic ribosome, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0009505 - plant-type cell wall, GO:0004565 - beta-galactosidase activity, GO:0004338 - glucan 1,3-beta-glucosidase activity	TO:0000259 - heat tolerance	
12083	BGLU10	Os4bglu10, Os4BGlu10	BETA-GLUCOSIDASE 10	beta-glucosidase 10	BETA-GLUCOSIDASE 10		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE05481. Q7F9K4.	 Biochemical character	Os04g0474500	LOC_Os04g39840.1, LOC_Os04g39840.2				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12084	BGLU9	Os4bglu9, Os4BGlu9	BETA-GLUCOSIDASE 9	beta-glucosidase 9	BETA-GLUCOSIDASE 9		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7ECS8. SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os04g0474300	LOC_Os04g39814.1, LOC_Os04g39814.2, LOC_Os04g39814.3				GO:0008422 - beta-glucosidase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0005975 - carbohydrate metabolic process		
12085	BGLU12	Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2	BETA-GLUCOSIDASE 12	beta-glucosidase 12, tuberonic acid glucoside beta-glucosidase 2, tuberonic acid glucoside hydrolyzing beta-glucosidase 2	BETA-GLUCOSIDASE 12		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE05483. Q7XKV4, B8AVF0. PDB code: 3PTK, 3PTM, 3PTQ. 	 Biochemical character	Os04g0474800	LOC_Os04g39880.1, LOC_Os04g39880.2, LOC_Os04g39880.3				GO:0004338 - glucan 1,3-beta-glucosidase activity, GO:0004565 - beta-galactosidase activity, GO:0033907 - beta-D-fucosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0047701 - beta-L-arabinosidase activity, GO:0009505 - plant-type cell wall, GO:0009860 - pollen tube growth		
12086	BGLU11	Os4bglu11, Os4BGlu11	BETA-GLUCOSIDASE 11	beta-glucosidase 11	BETA-GLUCOSIDASE 11		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE05482. Q7XKV5.	 Biochemical character	Os04g0474700	LOC_Os04g39864.1, LOC_Os04g39864.2, LOC_Os04g39864.3, LOC_Os04g39864.4				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12087	BGLU14	Os4bglu14, Os4Bglu14, Os4BGlu14	BETA-GLUCOSIDASE 14	beta-glucosidase 14	BETA-GLUCOSIDASE 14		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE03397. Q7XPY7.	 Biochemical character	Os04g0513100	LOC_Os04g43360.1, LOC_Os04g43360.2				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0009809 - lignin biosynthetic process		
12088	BGLU15	Os4bglu15, Os4Bglu15	BETA-GLUCOSIDASE 15	beta-glucosidase 15	BETA-GLUCOSIDASE 15		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE03399. Q7XPY5. LOC_Os04g43380. Os04g0513300 (in Rap3 (build5)).	 Biochemical character		LOC_Os04g43380				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0008422 - beta-glucosidase activity		
12089	BGLU16	Os4bglu16, Os4Bglu16, Os4BGlu16	BETA-GLUCOSIDASE 16	beta-glucosidase 16	BETA-GLUCOSIDASE 16		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE54544, CAE01908. Q7XSK2.	 Biochemical character	Os04g0513400	LOC_Os04g43390.1, LOC_Os04g43390.2				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0009809 - lignin biosynthetic process		
12090	BGLU17	Os4bglu17, Os4Bglu17	BETA-GLUCOSIDASE 17	beta-glucosidase 17	BETA-GLUCOSIDASE 17		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q7XSK1.	 Biochemical character	Os04g0513700	LOC_Os04g43400.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12091	BGLU18	Os4bglu18, Os4Bglu18, Os4BGlu18	BETA-GLUCOSIDASE 18	beta-glucosidase 18	BETA-GLUCOSIDASE 18		4	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. CAE01910, CAE54546. Q7XSK0. BGIOSGA014722 (indica).PDB: 7D6A. GO:0102483: scopolin beta-glucosidase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0513900	LOC_Os04g43410.1				GO:0008422 - beta-glucosidase activity, GO:0009809 - lignin biosynthetic process, GO:0009414 - response to water deprivation, GO:0033491 - coniferin metabolic process, GO:0047782 - coniferin beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process	TO:0000276 - drought tolerance	
12092	BGLU19	Os5bglu19, Os5Bglu19	BETA-GLUCOSIDASE 19	beta-glucosidase 19	BETA-GLUCOSIDASE 19		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAS79738. Q0DIT2.	 Biochemical character	Os05g0365600	LOC_Os05g30250.1, LOC_Os05g30250.2				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12093	BGLU20	Os5bglu20, Os5Bglu20	BETA-GLUCOSIDASE 20	beta-glucosidase 20	BETA-GLUCOSIDASE 20		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B9FHH2.	 Biochemical character	Os05g0365700	LOC_Os05g30280.1, LOC_Os05g30280.2, LOC_Os05g30280.3				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12094	BGLU21	Os5bglu21, Os5Bglu21	BETA-GLUCOSIDASE 21	beta-glucosidase 21	BETA-GLUCOSIDASE 21		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q60DY1.	 Biochemical character	Os05g0366000	LOC_Os05g30300.1				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
12095	BGLU22	Os5bglu22, Os5Bglu22	BETA-GLUCOSIDASE 22	beta-glucosidase 22	BETA-GLUCOSIDASE 22		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AAV31358. Q60DX8.	 Biochemical character	Os05g0366600	LOC_Os05g30350.1, LOC_Os05g30350.2				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12096	BGLU23	Os5bglu23, Os5Bglu23	BETA-GLUCOSIDASE 23	beta-glucosidase 23	BETA-GLUCOSIDASE 23		5	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q6L597.	 Biochemical character	Os05g0366800	LOC_Os05g30390.1				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12097	BGLU24	Os6bglu24, Os6BGlu24, 6BGlu24	BETA-GLUCOSIDASE 24	beta-glucosidase 24	BETA-GLUCOSIDASE 24		6	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD61620. Q5Z9Z0. SCC (sulfur-containing compound) biosynthetic gene. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0320200	LOC_Os06g21570.1				GO:0010269 - response to selenium ion, GO:0009505 - plant-type cell wall, GO:0009860 - pollen tube growth, GO:0005975 - carbohydrate metabolic process, GO:0042545 - cell wall modification, GO:0044272 - sulfur compound biosynthetic process, GO:0008422 - beta-glucosidase activity, GO:0010238 - response to proline	TO:0000034 - chromium sensitivity, TO:0000032 - selenium sensitivity	
12098	BGLU25	Os6bglu25, Os6Bglu25	BETA-GLUCOSIDASE 25	beta-glucosidase 25	BETA-GLUCOSIDASE 25		6	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q0DA21.	 Biochemical character	Os06g0683300	LOC_Os06g46940.1, LOC_Os06g46940.2				GO:0009505 - plant-type cell wall, GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12099	BGLU26	Os7bglu26, Os7BGlu26	BETA-GLUCOSIDASE 26	beta-glucosidase 26	BETA-GLUCOSIDASE 26		7	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. A3BMZ5.	 Biochemical character	Os07g0656200	LOC_Os07g46280.1, LOC_Os07g46280.2, LOC_Os07g46280.3				GO:0004565 - beta-galactosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0004338 - glucan 1,3-beta-glucosidase activity, GO:0004567 - beta-mannosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0022626 - cytosolic ribosome, GO:0009505 - plant-type cell wall, GO:0005975 - carbohydrate metabolic process, GO:0047668 - amygdalin beta-glucosidase activity, GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0047701 - beta-L-arabinosidase activity, GO:0033907 - beta-D-fucosidase activity		
12100	BGLU27	Os8bglu27, OsBGlu27	BETA-GLUCOSIDASE 27	beta-glucosidase 27	BETA-GLUCOSIDASE 27		8	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD10670, BAC57391. Q84YK7. SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os08g0509200	LOC_Os08g39860.1, LOC_Os08g39860.2				GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0009860 - pollen tube growth, GO:0009505 - plant-type cell wall, GO:0044272 - sulfur compound biosynthetic process		
12101	BGLU28	Os8bglu28, OsBGlu28	BETA-GLUCOSIDASE 28	beta-glucosidase 28	BETA-GLUCOSIDASE 28		8	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. BAD10672. Q7EXZ4. GO:0102483: scopolin beta-glucosidase activity.	 Biochemical character	Os08g0509400	LOC_Os08g39870.1				GO:0004565 - beta-galactosidase activity, GO:0033907 - beta-D-fucosidase activity, GO:0005983 - starch catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity, GO:0009505 - plant-type cell wall, GO:0009860 - pollen tube growth		
12102	BGLU29	Os9bglu29, OsBGlu29, OsBGLU29	BETA-GLUCOSIDASE 29	beta-glucosidase 29	BETA-GLUCOSIDASE 29		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. A3C053. SCC (sulfur-containing compound) biosynthetic gene. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0490400	LOC_Os09g31410.1, LOC_Os09g31410.2				GO:0010238 - response to proline, GO:0005975 - carbohydrate metabolic process, GO:0044272 - sulfur compound biosynthetic process, GO:0008422 - beta-glucosidase activity, GO:0042545 - cell wall modification	TO:0000034 - chromium sensitivity	
12103	BGLU30	Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2	BETA-GLUCOSIDASE 30	beta-glucosidase 30	BETA-GLUCOSIDASE 30		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. AY056828. Q0J0N4.  bglu2 in Opassiri et al. 2003.	 Biochemical character	Os09g0491100	LOC_Os09g31430.1, LOC_Os09g31430.2				GO:0009860 - pollen tube growth, GO:0008422 - beta-glucosidase activity, GO:0009505 - plant-type cell wall, GO:0005975 - carbohydrate metabolic process		
12104	BGLU31	Os9bglu31, Os9BGlu31	BETA-GLUCOSIDASE 31	beta-glucosidase 31	BETA-GLUCOSIDASE 31		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7F7K7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0511600	LOC_Os09g33680.1, LOC_Os09g33680.2				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12105	BGLU32	Os9bglu32, Os9Bglu32	BETA-GLUCOSIDASE 32	beta-glucosidase 32	BETA-GLUCOSIDASE 32		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. B7F7K7.	 Biochemical character	Os09g0511700	LOC_Os09g33690.1, LOC_Os09g33690.2, LOC_Os09g33690.3, LOC_Os09g33690.4				GO:0005975 - carbohydrate metabolic process, GO:0008422 - beta-glucosidase activity		
12106	BGLU33	Os9bglu33, Os9Bglu33, 9bglu33, OsBGLU33	BETA-GLUCOSIDASE 33	beta-glucosidase 33	BETA-GLUCOSIDASE 33		9	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q0J0G1. GO:1901657: glycosyl compound metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0511900	LOC_Os09g33710.1				GO:0005975 - carbohydrate metabolic process, GO:0010238 - response to proline, GO:0042545 - cell wall modification, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000034 - chromium sensitivity	
12107	BGLU34	Os10bglu34, Os10Bglu34	BETA-GLUCOSIDASE 34	beta-glucosidase 34	BETA-GLUCOSIDASE 34		10	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.  AAK92581. Q339X2.	 Biochemical character	Os10g0323500	LOC_Os10g17650.1				GO:0048046 - apoplast, GO:0008422 - beta-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0009507 - chloroplast		
12108	BGLU35	Os11bglu35, OsBGlu35	BETA-GLUCOSIDASE 35	beta-glucosidase 35	BETA-GLUCOSIDASE 35		11	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.  AAY23259. Q53NF0. SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os11g0184300	LOC_Os11g08120.1, LOC_Os11g08160.1				GO:0008422 - beta-glucosidase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0005975 - carbohydrate metabolic process		
12109	BGLU36	Os11bglu36, Os11Bglu36, SFR2, sfr2	BETA-GLUCOSIDASE 36	beta-glucosidase 36, SENSITIVE TO FREEZING2	BETA-GLUCOSIDASE 36		11	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q8L6H7. AJ491323. BGIOSGA035681 (indica). 	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0683500	LOC_Os11g45710.3, LOC_Os11g45710.2, LOC_Os11g45710.1, LOC_Os11g45710.4, LOC_Os11g45710.5, LOC_Os11g45710.6, LOC_Os11g45710.7				GO:0050826 - response to freezing, GO:0008422 - beta-glucosidase activity, GO:0050832 - defense response to fungus, GO:0009707 - chloroplast outer membrane, GO:0005975 - carbohydrate metabolic process, GO:0009414 - response to water deprivation	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000276 - drought tolerance	
12110	BGLU37	Os11bglu37, OsBGlu37	BETA-GLUCOSIDASE 37	beta-glucosidase 37	BETA-GLUCOSIDASE 37		11	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.	 Biochemical character								
12111	BGLU38	Os12bglu38, Os12Bglu38	BETA-GLUCOSIDASE 38	beta-glucosidase 38	BETA-GLUCOSIDASE 38		12	Glycosyl hydrolase family 1 (GH1) beta-glucosidase. Q2QSR8.	 Biochemical character	Os12g0420100	LOC_Os12g23170.1				GO:0080081 - 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity, GO:0047668 - amygdalin beta-glucosidase activity, GO:0080083 - beta-gentiobiose beta-glucosidase activity, GO:0080079 - cellobiose glucosidase activity, GO:0080082 - esculin beta-glucosidase activity, GO:0009505 - plant-type cell wall, GO:0022626 - cytosolic ribosome, GO:0005975 - carbohydrate metabolic process		
12112	BGLU39	Os12bglu39, Os12Bglu39	BETA-GLUCOSIDASE 39	beta-glucosidase 39	BETA-GLUCOSIDASE 39		12	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.	 Biochemical character								
12113	BGLU40	Os12bglu40, Os12Bglu40	BETA-GLUCOSIDASE 40	beta-glucosidase 40	BETA-GLUCOSIDASE 40		12	Glycosyl hydrolase family 1 (GH1) beta-glucosidase.	 Biochemical character								
12114	_		_	cystatin-II, cystein proteinase inhibitor			1	Q0JNR2.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0270100	LOC_Os01g16430.1				GO:0006952 - defense response, GO:0050897 - cobalt ion binding, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region, GO:0009628 - response to abiotic stimulus	TO:0000432 - temperature response trait	
12115	_		_	cystatin			3	Q10Q46.	 Biochemical character	Os03g0210200	LOC_Os03g11180.1				GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0006952 - defense response, GO:0005576 - extracellular region		
12116	_	ZIURP1, Ub-CEP52-1	_	ubiquitin fused to CEP52 gene-1			3	an ubiquitin fused to ribosomal protein L40. D12629. AB047855. P0CH34.		Os03g0234200	LOC_Os03g13170.1				GO:0005634 - nucleus, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
12117	ZFP179	OsZFP179, DLN27, OsDLN27	ZINC FINGER PROTEIN 179	zinc finger protein ZFP179, DLN repressor 27, DLN motif protein 27	ZINC FINGER PROTEIN 179		1	AAL76091. AY077725. OsZFP in Huang et al. 2002.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0839100	LOC_Os01g62190.1				GO:0008270 - zinc ion binding, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
12118	PROT	OsProT, ProT, OsProT2, ProT2	PROLINE TRANSPORTER	proline transporter, proline transporter 2	PROLINE TRANSPORTER		3	AB022783. Q60DN5. GO:0035524:proline transmembrane transport. OsProT2 in Zhao et al. 2012, Lin et al. 2019. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0644400	LOC_Os03g44230.1				GO:0005886 - plasma membrane, GO:0042594 - response to starvation, GO:0016021 - integral to membrane, GO:0015193 - L-proline transmembrane transporter activity		PO:0025034 - leaf 
12119	ZFP15	ZFP 15, OsZFP15	ZINC FINGER PROTEIN 15	zinc finger protein ZFP15, ZOS3-22-C2H2 zinc finger protein	ZINC FINGER PROTEIN 15		3	AY286473. HQ858846. C2H2 transcription factor. photosynthetic electron transport related gene. 	 Other	Os03g0820400	LOC_Os03g60570.1				GO:0008270 - zinc ion binding		
12120	_		_	Heavy metal ion transport, Heavy metal ion transporter			7		 Biochemical character	Os07g0623200	LOC_Os07g43040.1				GO:0030001 - metal ion transport, GO:0016021 - integral to membrane, GO:0019829 - cation-transporting ATPase activity, GO:0046872 - metal ion binding		
12121	YLC2	OsHO2, HO2, OsHO-2, HO-2	YOUNG LEAF CHLOROSIS 2	heme oxgenase 2, heme oxygenase-2, Young Leaf Chlorosis 2	HEME OXYGENASE 2	ylc2, Osho2	3	Q10K62. KF274032. TO:0006060: leaf chlorosis. GO:1901401: regulation of tetrapyrrole metabolic process.	 Coloration - Chlorophyll,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0395000	LOC_Os03g27770.1				GO:0033014 - tetrapyrrole biosynthetic process, GO:0006788 - heme oxidation, GO:0009408 - response to heat, GO:0004392 - heme oxygenase (decyclizing) activity, GO:0015979 - photosynthesis, GO:0009637 - response to blue light, GO:0009570 - chloroplast stroma, GO:0009507 - chloroplast	TO:0000496 - carotenoid content, TO:0000259 - heat tolerance, TO:0000159 - blue light sensitivity, TO:0000495 - chlorophyll content, TO:0000168 - abiotic stress trait	
12122	COPT1	OsCOPT1	COPPER TRANSPORTER 1	copper transporter 1			1	GQ387494. Q94EE4. COPT/Ctr type copper transporter-like gene family. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0770700	LOC_Os01g56420.1				GO:0043621 - protein self-association, GO:0046688 - response to copper ion, GO:0006952 - defense response, GO:0005887 - integral to plasma membrane, GO:0005375 - copper ion transmembrane transporter activity, GO:0051119 - sugar transmembrane transporter activity	TO:0000021 - copper sensitivity	
12123	COPT5	OsCOPT5	COPPER TRANSPORTER 5	copper transporter 5			5	GQ387495. Q60EN8. COPT/Ctr type copper transporter-like gene family. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0424700	LOC_Os05g35050.1				GO:0005887 - integral to plasma membrane, GO:0051119 - sugar transmembrane transporter activity, GO:0046686 - response to cadmium ion, GO:0005375 - copper ion transmembrane transporter activity, GO:0043621 - protein self-association, GO:0006952 - defense response		
12124	COPT2	COPT2, OsCOPT2	COPPER TRANSPORTER 2	copper transporter 2			1	Q5ZD08. HQ833653. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os01g0770800	LOC_Os01g56430.1				GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity		
12125	COPT3	COPT3, OsCOPT3	COPPER TRANSPORTER 3	copper transporter 3			3	Q10KT6. HQ833654. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os03g0370800	LOC_Os03g25470.1				GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity		
12126	COPT4	COPT4, OsCOPT4	COPPER TRANSPORTER 4	copper transporter 4			4	Q7XTF8. HQ833655. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os04g0415600	LOC_Os04g33900.1				GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity		
12127	COPT6	COPT6, OsCOPT6	COPPER TRANSPORTER 6	copper transporter 6			8	Q6Z0Q9. HQ833656. COPT/Ctr type copper transporter-like gene family.	 Biochemical character	Os08g0455900	LOC_Os08g35490.1				GO:0005375 - copper ion transmembrane transporter activity, GO:0016021 - integral to membrane		
12128	COPT7	OsCOPT7	COPPER TRANSPORTER 7	copper transporter 7			9	Q69P80. HQ833657. COPT/Ctr type copper transporter-like gene family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0440700	LOC_Os09g26900.1				GO:0016021 - integral to membrane, GO:0046688 - response to copper ion, GO:0005375 - copper ion transmembrane transporter activity	TO:0000021 - copper sensitivity	
12129	MIOX	OsMIOX	MYO-INOSITOL OXYGENASE	Myo-inositol oxygenase	MYO-INOSITOL OXYGENASE	osmiox	6	Q5Z8T3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0561000	LOC_Os06g36560.1, LOC_Os06g36560.2				GO:0009737 - response to abscisic acid stimulus, GO:0016036 - cellular response to phosphate starvation, GO:0005506 - iron ion binding, GO:0005783 - endoplasmic reticulum, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0019310 - inositol catabolic process, GO:0006949 - syncytium formation, GO:0005737 - cytoplasm, GO:0031667 - response to nutrient levels, GO:0042594 - response to starvation, GO:0009414 - response to water deprivation, GO:0050113 - inositol oxygenase activity	TO:0000276 - drought tolerance, TO:0000102 - phosphorus sensitivity, TO:0000615 - abscisic acid sensitivity	
12130	_	OsCPR1, CPR1	_	cytochrome P450 reductase 1, NADPH-cytochrome P450 reductase 1			4	BF889484.	 Biochemical character	Os04g0653400	LOC_Os04g55960.1				GO:0009753 - response to jasmonic acid stimulus, GO:0016491 - oxidoreductase activity	TO:0000172 - jasmonic acid sensitivity	
12131	_	OsCPR2	_	cytochrome P450 reductase 2, NADPH-cytochrome P450 reductase 2			8		 Biochemical character	Os08g0243500	LOC_Os08g14570.1				GO:0009698 - phenylpropanoid metabolic process, GO:0005506 - iron ion binding, GO:0003958 - NADPH-hemoprotein reductase activity, GO:0010181 - FMN binding, GO:0005783 - endoplasmic reticulum		
12132	_	OsCPR3	_	cytochrome P450 reductase 3, NADPH-cytochrome P450 reductase 3			9		 Biochemical character	Os09g0558900	LOC_Os09g38620.1				GO:0010181 - FMN binding, GO:0003958 - NADPH-hemoprotein reductase activity, GO:0005506 - iron ion binding, GO:0009698 - phenylpropanoid metabolic process, GO:0005789 - endoplasmic reticulum membrane		
12133	_	OsLCBK1	_	long-chain base kinase 1			10		 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0516800	LOC_Os10g37280.1				GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, GO:0004143 - diacylglycerol kinase activity		
12134	_	OsLCBK2	_	long-chain base kinase 2			4		 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0541500	LOC_Os04g45800.1				GO:0004143 - diacylglycerol kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway		
12135	LFL2	OsLFL2, OsLFL3, LFL3	LATE-FLOWERING 2	B3 domain-containing protein LFL2, LEC2 and FUSCA3-like protein 2, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2	LEC2 AND FUSCA3-LIKE PROTEIN 2		4	Q7XKC4. OsLFL3 in Yang et al. 2013.	 Other	Os04g0676650	LOC_Os04g58010.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
12136	OAT	OsOAT, delta-OAT	ORNITHINE DELTA-AMINOTRANSFERASE	ornithine delta-aminotransferase, ornithine aminotransferase	ORNITHINE DELTA-AMINOTRANSFERASE	Osoat, Osoat-1, Osoat-2	3	Q10G56. GO:0055129:L-proline biosynthetic process. TO:0000869: glume morphology trait. TO:0000931: seed quality trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0643300	LOC_Os03g44150.1				GO:0004587 - ornithine-oxo-acid transaminase activity, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009269 - response to desiccation, GO:0008270 - zinc ion binding, GO:0009610 - response to symbiotic fungus, GO:0006970 - response to osmotic stress, GO:0042538 - hyperosmotic salinity response, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0006593 - ornithine catabolic process, GO:0005759 - mitochondrial matrix, GO:0009733 - response to auxin stimulus, GO:0009856 - pollination, GO:0009901 - anther dehiscence, GO:0009908 - flower development, GO:0006561 - proline biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0019544 - arginine catabolic process to glutamate, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity, TO:0002673 - amino acid content, TO:0020034 - glume width, TO:0020033 - glume length, TO:0000484 - seed shape, TO:0000474 - glume opening, TO:0000180 - spikelet fertility, TO:0000622 - flower development trait, TO:0006002 - proline content, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance	PO:0007615 - flower development stage 
12138	_	OsDjA1	_	DnaJ domain protein A1			2		 Tolerance and resistance - Stress tolerance	Os02g0656500	LOC_Os02g43930.1, LOC_Os02g43930.2, LOC_Os02g43930.3				GO:0009408 - response to heat, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0006457 - protein folding		
12139	_	OsDjA2	_	DnaJ domain protein A2, rice DJA4 homolog			2	a Homolog of Arabidopsis chloroplast J protein. LOC_Os02g56040.	 Tolerance and resistance - Stress tolerance	Os02g0804500	LOC_Os02g56040.1				GO:0006457 - protein folding, GO:0009535 - chloroplast thylakoid membrane, GO:0046872 - metal ion binding, GO:0009408 - response to heat, GO:0005524 - ATP binding		
12140	_	OsDjA3	_	DnaJ domain protein A3			3								GO:0006457 - protein folding		
12141	_	OsDjA4, YDJ1	_	DnaJ domain protein A4, YDJ1 protein			3	A rice ortholog protein of yeast Ydj1 protein. D15677.	 Tolerance and resistance - Stress tolerance	Os03g0648400	LOC_Os03g44620.2				GO:0006457 - protein folding, GO:0046872 - metal ion binding, GO:0009408 - response to heat, GO:0005524 - ATP binding		
12142	DJA5	OsDjA5	DNAJ DOMAIN PROTEIN A5	DnaJ domain protein A5	DNAJ DOMAIN PROTEIN A5		3	A rice ortholog protein of yeast Ydj1 protein. Chaperone protein DnaJ. miR529a-target.	 Tolerance and resistance - Stress tolerance	Os03g0787300	LOC_Os03g57340.1				GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0009408 - response to heat, GO:0006457 - protein folding		
12143	DJA6	OsDjA6, DjA6	DNAJ DOMAIN PROTEIN A6	DnaJ domain protein A6, DnaJ protein RNB8	DNAJ DOMAIN PROTEIN A6		4	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance	Os04g0549600	LOC_Os04g46390.1, LOC_Os04g46390.2, LOC_Os04g46390.3				GO:0031348 - negative regulation of defense response, GO:0006457 - protein folding, GO:0002237 - response to molecule of bacterial origin, GO:0010498 - proteasomal protein catabolic process, GO:0009408 - response to heat, GO:0002238 - response to molecule of fungal origin, GO:0005524 - ATP binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0052567 - response to defense-related host reactive oxygen species production, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding	TO:0000074 - blast disease, TO:0000233 - root volume, TO:0000112 - disease resistance	
12144	_	OsDjA7, OsDnaJ	_	DnaJ domain protein A7, rice DJA6 homolog			5	a Homolog of Arabidopsis chloroplast J protein. LOC_Os05g26902. OsDnaJ in Yamamoto et al. 2005.	 Tolerance and resistance - Stress tolerance	Os05g0333500	LOC_Os05g26902.1				GO:0009658 - chloroplast organization, GO:0006974 - response to DNA damage stimulus, GO:0009411 - response to UV, GO:0046872 - metal ion binding, GO:0042542 - response to hydrogen peroxide, GO:0009535 - chloroplast thylakoid membrane, GO:0009408 - response to heat, GO:0006457 - protein folding, GO:0005524 - ATP binding	TO:0002715 - chloroplast development trait, TO:0000160 - UV light sensitivity	
12145	DJA8	OsDjA8, DjA8	DNAJ DOMAIN PROTEIN A8	DnaJ domain protein A8, rice DJA7 homolog	DNAJ DOMAIN PROTEIN A8		5	a Homolog of Arabidopsis chloroplast J protein.	 Tolerance and resistance - Stress tolerance	Os05g0334400	LOC_Os05g26926.1				GO:0046872 - metal ion binding, GO:0009408 - response to heat, GO:0009535 - chloroplast thylakoid membrane, GO:0006457 - protein folding, GO:0005524 - ATP binding, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait	
12146	DJA9	OsDjA9, DjA9	DNAJ DOMAIN PROTEIN A9	DnaJ domain protein A9	DNAJ DOMAIN PROTEIN A9		6	GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0116800	LOC_Os06g02620.1				GO:0050832 - defense response to fungus, GO:0000740 - nuclear membrane fusion, GO:0007005 - mitochondrion organization, GO:0010198 - synergid death, GO:0010197 - polar nucleus fusion, GO:0009558 - cellularization of the embryo sac, GO:0051085 - chaperone mediated protein folding requiring cofactor, GO:0060267 - positive regulation of respiratory burst, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0005739 - mitochondrion, GO:0005783 - endoplasmic reticulum	TO:0000074 - blast disease	
12147	_	OsDjA10	_	DnaJ domain protein A10			6								GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding		
12148	_	OsDjA11	_	DnaJ domain protein A11			12		 Tolerance and resistance - Stress tolerance	Os12g0168400	LOC_Os12g07060.1				GO:0046872 - metal ion binding, GO:0006457 - protein folding, GO:0009408 - response to heat, GO:0005524 - ATP binding		
12149	_	OsDjA12	_	DnaJ domain protein A12			12			Os12g0619100	LOC_Os12g42440.1				GO:0046872 - metal ion binding, GO:0006457 - protein folding		
12150	_	OsDjB1	_	DnaJ domain protein B1			1		 Tolerance and resistance - Stress tolerance	Os01g0239100	LOC_Os01g13760.1				GO:0006950 - response to stress, GO:0006457 - protein folding		
12151	_	OsDjB2	_	DnaJ domain protein B2			1			Os01g0875700	LOC_Os01g65480.1				GO:0006457 - protein folding		
12152	_	OsDjB3	_	DnaJ domain protein B3			2		 Tolerance and resistance - Stress tolerance	Os02g0128400	LOC_Os02g03600.1				GO:0006950 - response to stress, GO:0006457 - protein folding		
12153	_	OsDjB4	_	DnaJ domain protein B4			2			Os02g0306900	LOC_Os02g20394.1				GO:0006457 - protein folding		
12154	_	OsDjB5	_	DnaJ domain protein B5			5			Os05g0127400	LOC_Os05g03630.1						
12155	_	OsDjB7, DjB7	_	DnaJ domain protein B7			5	OsSUF4 target gene (Liu et al. 2019).	 Tolerance and resistance - Stress tolerance	Os05g0562300	LOC_Os05g48810.1				GO:0006950 - response to stress, GO:0006457 - protein folding		
12156	_	OsDjB8	_	DnaJ domain protein B8			8		 Tolerance and resistance - Stress tolerance	Os08g0161900	LOC_Os08g06460.1, LOC_Os08g06460.2				GO:0006457 - protein folding, GO:0006950 - response to stress		
12157	_	OsDjB9, OsSTA211	_	DnaJ domain protein B9			8	LOC_Os08g28700. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os08g0374400	LOC_Os08g28700.1				GO:0006457 - protein folding, GO:0006950 - response to stress		PO:0009066 - anther 
12158	_	OsDjC1	_	DnaJ domain protein C1, rice DJC26 homolog			1	a Homolog of Arabidopsis chloroplast J protein. LOC_Os01g01160.		Os01g0101700	LOC_Os01g01160.1						
12159	_	OsDjC2	_	DnaJ domain protein C2			1			Os01g0157800	LOC_Os01g06454.1						
12160	_	OsDjC3	_	DnaJ domain protein C3			1	LOC_Os01g17030.			LOC_Os01g17030						
12161	DJC4	OsDjC4	DNAJ DOMAIN PROTEIN C4	DnaJ domain protein C4	DNAJ DOMAIN PROTEIN C4		1			Os01g0277900	LOC_Os01g17040.1				GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane		
12162	_	OsDjC5	_	DnaJ domain protein C5			1			Os01g0355500	LOC_Os01g25320.1						
12163	_	OsDjC6	_	DnaJ domain protein C6			1		 Tolerance and resistance - Stress tolerance	Os01g0375100	LOC_Os01g27740.1, LOC_Os01g27740.2, LOC_Os01g27740.3				GO:0006950 - response to stress		
12164	_	OsDjC7	_	DnaJ domain protein C7			1			Os01g0512100	LOC_Os01g32870.1, LOC_Os01g32870.2						
12165	_	OsDjC8	_	DnaJ domain protein C8			1		 Tolerance and resistance - Stress tolerance	Os01g0521500	LOC_Os01g33800.1, LOC_Os01g33800.2				GO:0006950 - response to stress		
12166	_	OsDjC9	_	DnaJ domain protein C9			1	LOC_Os01g37560.3. HSP40 domain containing protein.	 Tolerance and resistance - Stress tolerance	Os01g0556400	LOC_Os01g37560.1, LOC_Os01g37560.2, LOC_Os01g37560.3				GO:0006950 - response to stress	TO:0000164 - stress trait	
12167	BPH33	OsDjC10, DjC10, Bph33(t), Bph33	BROWN PLANTHOPPER RESISTANCE 33	DnaJ domain protein C10			1	LOC_Os01g42190.1 It is likely that the HSP gene  (LOC_Os01g42190.1) represented Bph33(t) (Sabhavat et al. 2018).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os01g0606900	LOC_Os01g42190.1				GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance, TO:0000276 - drought tolerance	
12168	_	OsDjC11	_	DnaJ domain protein C11			1			Os01g0634300	LOC_Os01g44310.1, LOC_Os01g44310.2						
12169	_	OsDjC12	_	DnaJ domain protein C12			1	P30287.	 Tolerance and resistance - Stress tolerance						GO:0006950 - response to stress, GO:0009415 - response to water		
12170	_	OsDjC13	_	DnaJ domain protein C13, rice DJC76 homolog			1	a Homolog of Arabidopsis chloroplast J protein. LOC_Os01g53020.		Os01g0730500	LOC_Os01g53020.1				GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0009507 - chloroplast, GO:0051536 - iron-sulfur cluster binding		
12171	DJC14	OsDjC14	DNAJ DOMAIN PROTEIN C14	DnaJ domain protein C14	DNAJ DOMAIN PROTEIN C14		1	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os01g0923800	LOC_Os01g69930.1				GO:0006950 - response to stress, GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009066 - anther , PO:0009030 - carpel 
12172	_	OsDjC15, OsP58B	_	DnaJ domain protein C15			1	an ER-resident J-protein. a co-chaperone component of the HSP70 system.	 Tolerance and resistance - Stress tolerance	Os01g0977200	LOC_Os01g74580.1, LOC_Os01g74580.2				GO:0034975 - protein folding in endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0005788 - endoplasmic reticulum lumen, GO:0006458 - 'de novo' protein folding, GO:0034976 - response to endoplasmic reticulum stress		
12173	_	OsDjC16, OsP58A	_	DnaJ domain protein C16			2	an ER-resident J-protein. a co-chaperone component of the HSP70 system.		Os02g0195300	LOC_Os02g10180.1, LOC_Os02g10180.2				GO:0005788 - endoplasmic reticulum lumen, GO:0006458 - 'de novo' protein folding, GO:0005886 - plasma membrane, GO:0034975 - protein folding in endoplasmic reticulum		
12174	_	OsDjC17	_	DnaJ domain protein C17			2			Os02g0195800	LOC_Os02g10220.1						
12175	_	OsDjC18	_	DnaJ domain protein C18			2		 Tolerance and resistance - Stress tolerance	Os02g0510000	LOC_Os02g30620.1, LOC_Os02g30620.2, LOC_Os02g30620.3				GO:0006950 - response to stress		
12176	_	OsDjC19	_	DnaJ domain protein C19			2			Os02g0555700	LOC_Os02g35000.1						
12177	_	OsDjC20	_	DnaJ domain protein C20			2			Os02g0693200	LOC_Os02g46640.1						
12178	_	OsDjC21	_	DnaJ domain protein C21			2			Os02g0741100	LOC_Os02g50760.1, LOC_Os02g50760.2, LOC_Os02g50760.3						
12179	DJC22	OsDjC22, DjC22	DNAJ DOMAIN PROTEIN C22	DnaJ domain protein C22	DNAJ DOMAIN PROTEIN C22		2		 Tolerance and resistance - Stress tolerance	Os02g0760000	LOC_Os02g52270.2, LOC_Os02g52270.1				GO:0006950 - response to stress		
12180	_	OsDjC23	_	DnaJ domain protein C23			2			Os02g0782300	LOC_Os02g54130.1, LOC_Os02g54130.2, LOC_Os02g54130.3, LOC_Os02g54130.4						
12181	_	OsDjC24	_	DnaJ domain protein C24			3			Os03g0136800	LOC_Os03g04400.1				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
12182	_	OsDjC25	_	DnaJ domain protein C25			3			Os03g0198300	LOC_Os03g10180.1						
12183	_	OsDjC26	_	DnaJ domain protein C26			3			Os03g0261500	LOC_Os03g15480.1						
12184	_	OsDjC27	_	DnaJ domain protein C27			3		 Tolerance and resistance - Stress tolerance						GO:0055114 - oxidation reduction, GO:0005788 - endoplasmic reticulum lumen, GO:0009860 - pollen tube growth, GO:0016491 - oxidoreductase activity, GO:0009408 - response to heat		
12185	_	OsDjC28	_	DnaJ domain protein C28			3			Os03g0300600	LOC_Os03g18870.1						
12186	_	OsDjC29	_	DnaJ domain protein C29			3			Os03g0323600	LOC_Os03g20730.1						
12187	_	OsDjC30	_	DnaJ domain protein C30			3		 Tolerance and resistance - Stress tolerance	Os03g0401200	LOC_Os03g28310.1				GO:0006950 - response to stress		
12188	_	OsDjC31	_	DnaJ domain protein C31			3		 Tolerance and resistance - Stress tolerance	Os03g0560400	LOC_Os03g36160.1				GO:0006950 - response to stress		
12189	_	OsDjC32	_	DnaJ domain protein C32			3			Os03g0728100	LOC_Os03g51830.1						
12190	_	OsDjC33	_	DnaJ domain protein C33			3			Os03g0752700	LOC_Os03g54150.1, LOC_Os03g54150.2						
12191	_	OsDjC34	_	DnaJ domain protein C34			3		 Tolerance and resistance - Stress tolerance	Os03g0761700	LOC_Os03g55360.1				GO:0006950 - response to stress		
12192	_	OsDjC35	_	DnaJ domain protein C35			3			Os03g0776900	LOC_Os03g56540.3						
12193	_	OsDjC36	_	DnaJ domain protein C36, rice DJC73 homolog			3	a Homolog of Arabidopsis chloroplast J protein. LOC_Os03g60790.		Os03g0822800	LOC_Os03g60790.1, LOC_Os03g60790.2, LOC_Os03g60790.3						
12194	_	OsDjC37	_	DnaJ domain protein C37			3		 Tolerance and resistance - Stress tolerance	Os03g0831000	LOC_Os03g61550.1				GO:0006950 - response to stress		
12195	_	OsDjC38	_	DnaJ domain protein C38			3		 Tolerance and resistance - Stress tolerance	Os03g0832900	LOC_Os03g61730.1				GO:0006950 - response to stress		
12196	_	OsDjC39	_	DnaJ domain protein C39			3			Os03g0837400	LOC_Os03g62120.1						
12197	_	OsDjC40	_	DnaJ domain protein C40			3			Os03g0837550	LOC_Os03g62130.1						
12198	_	OsDjC41	_	DnaJ domain protein C41			3	LOC_Os03g62140.			LOC_Os03g62140						
12199	_	OsDjC42	_	DnaJ domain protein C42			3			Os03g0837700	LOC_Os03g62150.1						
12200	_	OsDjC43, OsERdj2	_	DnaJ domain protein C43, ER-resident J-protein 2			4	a co-chaperone component of the HSP70 system.		Os04g0307200	LOC_Os04g24180.1, LOC_Os04g24180.2				GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0009960 - endosperm development, GO:0042735 - protein body, GO:0031204 - posttranslational protein targeting to membrane, translocation, GO:0030176 - integral to endoplasmic reticulum membrane, GO:0008565 - protein transporter activity		
12201	_	OsDjC44	_	DnaJ domain protein C44			4			Os04g0388800	LOC_Os04g31940.1						
12202	_	OsDjC45	_	DnaJ domain protein C45, rice DJC77 homolog			4	a Homolog of Arabidopsis chloroplast J protein. LOC_Os04g57880.		Os04g0675400	LOC_Os04g57880.1						
12203	_	OsDjC46	_	DnaJ domain protein C46, rice DJC72 homolog			4	a homolog of Arabidopsis chloroplast J protein. LOC_Os04g59060.		Os04g0687300	LOC_Os04g59060.1, LOC_Os04g59060.2						
12204	_	OsDjC47	_	DnaJ domain protein C47, rice DJC72 homolog			5	a homolog of Arabidopsis chloroplast J protein. LOC_Os05g01590.		Os05g0106500	LOC_Os05g01590.1						
12205	_	OsDjC48, DjC48	_	DnaJ domain protein C48			5		 Tolerance and resistance - Stress tolerance	Os05g0364500	LOC_Os05g30130.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
12206	_	OsDjC49	_	DnaJ domain protein C49			5			Os05g0374600	LOC_Os05g31062.1						
12207	_	OsDjC50	_	DnaJ domain protein C50, rice DJC82 homolog			5	a Homolog of Arabidopsis chloroplast J protein. LOC_Os05g45350.		Os05g0529700	LOC_Os05g45350.1, LOC_Os05g45350.2, LOC_Os05g45350.3				GO:0051536 - iron-sulfur cluster binding, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0009507 - chloroplast		
12208	_	OsDjC51	_	DnaJ domain protein C51			5			Os05g0543700	LOC_Os05g46620.1						
12209	_	OsDjC52	_	DnaJ domain protein C52			5			Os05g0579900	LOC_Os05g50370.1						
12210	DJC53	OsDjC53, DjC53	DNAJ DOMAIN PROTEIN C53	DnaJ domain protein C53	DNAJ DOMAIN PROTEIN C53		6		 Tolerance and resistance - Stress tolerance	Os06g0195800	LOC_Os06g09560.1				GO:0005783 - endoplasmic reticulum, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
12211	_	OsDjC54	_	DnaJ domain protein C54			6			Os06g0237800	LOC_Os06g13060.1						
12212	_	OsDjC55	_	DnaJ domain protein C55			6		 Tolerance and resistance - Stress tolerance	Os06g0535300	LOC_Os06g34440.1				GO:0006950 - response to stress		
12213	_	OsDjC56	_	DnaJ domain protein C56, rice DJC22 homolog			6	a homolog of Arabidopsis chloroplast J protein. LOC_Os06g44160.		Os06g0650900	LOC_Os06g44160.1, LOC_Os06g44160.2						
12214	_	OsDjC57	_	DnaJ domain protein C57			7			Os07g0124800	LOC_Os07g03270.1						
12215	NAL11	OsDjC58, DjC58, OsHSP40, HSP40, LM7, OsLM7	NARROW LEAF 11	DnaJ domain protein C58, narrow leaf 11, Leaf Mutant 7		nal11, lm7, Oshsp40, Oshsp40-1, Oshsp40-2	7	TO:0000820: leaf vein morphology trait. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Vegetative organ - Leaf,  Reproductive organ - panicle,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0192300	LOC_Os07g09450.1				GO:0005737 - cytoplasm, GO:0010305 - leaf vascular tissue pattern formation, GO:0051302 - regulation of cell division, GO:0001558 - regulation of cell growth	TO:0000382 - 1000-seed weight, TO:0000371 - yield trait, TO:0002637 - leaf size, TO:0000558 - small vascular bundle number, TO:0000135 - leaf length, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000539 - large vascular bundle number, TO:0000370 - leaf width, TO:0000734 - grain length	PO:0009010 - seed , PO:0020141 - stem node , PO:0020142 - stem internode , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0025424 - vascular tissue development stage 
12216	_	OsDjC59	_	DnaJ domain protein C59			7			Os07g0470800	LOC_Os07g28800.1						
12217	_	OsDjC60	_	DnaJ domain protein C60, rice DJC65 homolog			7	a homolog of Arabidopsis chloroplast J protein. LOC_Os07g43330.		Os07g0626400	LOC_Os07g43330.1						
12218	_	OsDjC61	_	DnaJ domain protein C61			7										
12219	_	OsDjC62	_	DnaJ domain protein C62			8			Os08g0452900	LOC_Os08g35160.1, LOC_Os08g35160.2, LOC_Os08g35160.3						
12220	_	OsDjC63	_	DnaJ domain protein C63			8			Os08g0474600	LOC_Os08g36980.1, LOC_Os08g36980.2						
12221	_	OsDjC64	_	DnaJ domain protein C64			8	LOC_Os08g37270.			LOC_Os08g37270				GO:0003677 - DNA binding		
12222	_	OsDjC65	_	DnaJ domain protein C65			8			Os08g0522600	LOC_Os08g41110.1						
12223	_	OsDjC66	_	DnaJ domain protein C66, rice DJC23 homolog			8	a homolog of Arabidopsis chloroplast J protein. LOC_Os08g43490.		Os08g0548400	LOC_Os08g43490.1						
12224	_	OsDjC67	_	DnaJ domain protein C67			9			Os09g0368800	LOC_Os09g20320.1						
12225	_	OsDjC68	_	DnaJ domain protein C68			9		 Tolerance and resistance - Stress tolerance	Os09g0460000	LOC_Os09g28590.1, LOC_Os09g28590.2, LOC_Os09g28590.3				GO:0006950 - response to stress		
12226	_	OsDjC69	_	DnaJ domain protein C69			9			Os09g0463700	LOC_Os09g28890.1, LOC_Os09g28890.2				GO:0003677 - DNA binding		
12227	_	OsDjC70	_	DnaJ domain protein C70			9			Os09g0493800	LOC_Os09g32050.1, LOC_Os09g32050.2						
12228	_	OsDjC71	_	DnaJ domain protein C71			10			Os10g0124600	LOC_Os10g03610.1						
12229	_	OsDjC72	_	DnaJ domain protein C72			10			Os10g0188200	LOC_Os10g11012.1						
12230	_	OsDjC73	_	DnaJ domain protein C73			10			Os10g0507800	LOC_Os10g36370.1				GO:0055122 - response to very low light intensity stimulus, GO:0010228 - vegetative to reproductive phase transition		
12231	_	OsDjC74	_	DnaJ domain protein C74			10			Os10g0575200	LOC_Os10g42439.1				GO:0009959 - negative gravitropism, GO:0051301 - cell division, GO:0009660 - amyloplast organization, GO:0006623 - protein targeting to vacuole, GO:0042594 - response to starvation, GO:0007033 - vacuole organization, GO:0005783 - endoplasmic reticulum, GO:0005770 - late endosome, GO:0005802 - trans-Golgi network, GO:0005774 - vacuolar membrane, GO:0009793 - embryonic development ending in seed dormancy, GO:0007032 - endosome organization		
12232	_	OsDjC75	_	DnaJ domain protein C75			11			Os11g0573800	LOC_Os11g36520.1, LOC_Os11g36530.1						
12233	_	OsDjC76	_	DnaJ domain protein C76			11			Os11g0578100	LOC_Os11g36960.1						
12234	_	OsDjC77	_	DnaJ domain protein C77			11			Os11g0578500	LOC_Os11g37000.1						
12235	_	OsDjC78	_	DnaJ domain protein C78			11			Os11g0661200	LOC_Os11g43950.1				GO:0005886 - plasma membrane, GO:0005829 - cytosol		
12236	_	OsDjC79, OsERdj7	_	DnaJ domain protein C79, ER-resident J-protein 7			12			Os12g0258200	LOC_Os12g15590.1, LOC_Os12g15590.2				GO:0005783 - endoplasmic reticulum		
12237	ISC26	OsDjC80, OsISC26	IRON-SULFUR CLUSTER PROTEIN 26	DnaJ domain protein C80, Iron-sulfur cluster protein 26	IRON-SULFUR CLUSTER PROTEIN 26		12			Os12g0456200	LOC_Os12g27070.1				GO:0006457 - protein folding, GO:0051259 - protein oligomerization		
12238	_	OsDjC81	_	DnaJ domain protein C81			12			Os12g0502700	LOC_Os12g31840.1				GO:0008270 - zinc ion binding		
12239	_	OsDjC82, DjC82, XB21	_	DnaJ domain protein C82, XA21 binding protein 21			12	LOC_Os12g36180. an Auxilin-Like Protein. a type III J-protein.	 Tolerance and resistance - Disease resistance	Os12g0548200	LOC_Os12g36180.1				GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0010940 - positive regulation of necrotic cell death, GO:0045807 - positive regulation of endocytosis	TO:0000175 - bacterial blight disease resistance	
12240	_	OsDjC83	_	DnaJ domain protein C83			12		 Tolerance and resistance - Stress tolerance	Os12g0612400	LOC_Os12g41820.1				GO:0006950 - response to stress		
12241	NRR	OsNRR, NRRa, NRRb, OsCCT18, OsCMF6, CCT18, CMF6, CRCT, OsCRCT	NUTRITION RESPONSE AND ROOT GROWTH	"nutrition response and root growth, CCT domain-containing gene 18, CCT (CO, CO-LIKE and TOC1) domain protein 18, CCT domain protein 18, CCT MOTIF FAMILY (CMF) gene 6, \"CO2-Responsive CONSTANS, CONSTANSlike, and Time of Chlorophyll a/b Binding Protein1\", CO2-responsive CCT protein"			5	GO:2000904: regulation of starch metabolic process. GO:1901698: response to nitrogen compound.	 Vegetative organ - Root,  Other,  Tolerance and resistance - Stress tolerance	Os05g0595300	LOC_Os05g51690.3, LOC_Os05g51690.2, LOC_Os05g51690.1				GO:0070482 - response to oxygen levels, GO:0031667 - response to nutrient levels, GO:0009749 - response to glucose stimulus, GO:0007623 - circadian rhythm, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010581 - regulation of starch biosynthetic process, GO:0019740 - nitrogen utilization, GO:0010037 - response to carbon dioxide, GO:0009744 - response to sucrose stimulus, GO:0005634 - nucleus	TO:0000015 - oxygen sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000696 - starch content, TO:0000567 - tiller angle	PO:0005020 - vascular bundle , PO:0004006 - mesophyll cell , PO:0020142 - stem internode , PO:0025034 - leaf , PO:0005417 - phloem , PO:0020104 - leaf sheath 
12242	MIR396A	miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a	MICRORNA396A	MICRORNA396a, osa-miRNA396a	_		2	miRBASE accession: MI0001046. LM383060 LM379291.	 Other,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance						GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0042127 - regulation of cell proliferation, GO:0009409 - response to cold, GO:0035195 - gene silencing by miRNA, GO:0009739 - response to gibberellin stimulus, GO:0002213 - defense response to insect, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000429 - salt sensitivity, TO:0000424 - brown planthopper resistance, TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0006036 - stem elongation	PO:0007089 - stem elongation stage 
12243	MIR396B	miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b	MICRORNA396B	MICRORNA396b, osa-miRNA396b	_		6	miRBASE accession: MI0001047.LM383061 LM379292	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Insect resistance						GO:0009863 - salicylic acid mediated signaling pathway, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold, GO:0002213 - defense response to insect, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage	TO:0000290 - flavonoid content, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000303 - cold tolerance, TO:0000074 - blast disease	PO:0025034 - leaf 
12244	MIR2121A	miR2121a, osa-miR2121a, osa-MIR2121a	MICRORNA2121A	MICRORNA2121a, osa-miRNA2121a	_		1	miRBASE accession: MI0010709.LM381226	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12245	MIR5159	miR5159, osa-miR5159, osa-MIR5159	MICRORNA5159	MICRORNA5159, osa-miRNA5159	_		11	miRBASE accession: MI0018075. predicted target(s): lactase.LM382904	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12246	MIR1428F	miR1428f, osa-miR1428f, osa-MIR1428f	MICRORNA1428F	MICRORNA1428f, osa-miRNA1428f	_		7	miRBASE accession: MI0010548.	 Other								
12247	MIR1433	miR1433, osa-miR1433, osa-MIR1433	MICRORNA1433	MICRORNA1433, osa-miRNA1433	_			predicted target(s): CCAAT-binding transcription factor.	 Other								
12248	MIR5533	miR5533, osa-miR5533, osa-MIR5533	MICRORNA5533	MICRORNA5533, osa-miRNA5533	_		4	miRBASE accession: MI0019053.	 Other								
12249	MIR810A	miR810a, osa-miR810a, osa-MIR810a	MICRORNA810A	MICRORNA810a, osa-miRNA810a	_			miRBASE accession: MI0005229.LM380040	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12250	MIR169P	miR169p, osa-miR169p, miR169-p	MICRORNA169P	MICRORNA169p, osa-miRNA169p	_		8	miRBASE accession: MI0001131. Target: OschlME (Os01g0188400).	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12251	MSH5	OsMSH5	MUTS-HOMOLOG 5	MutS-homolog 5	MUTS-HOMOLOG 5	Osmsh5, Osmsh5-1, Osmsh5-2, Osmsh5-3, Osmsh5-4, Osmsh5-5, msh5	5	a Meiosis-Specific Protein. a rice homolog of MSH5.	 Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0498300	LOC_Os05g41880.1				GO:0007131 - reciprocal meiotic recombination, GO:0010332 - response to gamma radiation, GO:0008094 - DNA-dependent ATPase activity, GO:0045143 - homologous chromosome segregation, GO:0030983 - mismatched DNA binding, GO:0000795 - synaptonemal complex, GO:0051026 - chiasma formation, GO:0007126 - meiosis, GO:0005524 - ATP binding, GO:0006298 - mismatch repair	TO:0000161 - radiation response trait	
12252	ZIP4	OsZIP4, SPO22, OsSPO22	_	ZMM protein OsZIP4, rice ZIP4 homolog		Oszip4, zip4	1	Q5N829. GO:0071139: resolution of recombination intermediates.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0890900	LOC_Os01g66690.1				GO:0007143 - female meiosis, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination, GO:0007126 - meiosis, GO:0007140 - male meiosis		
12253	HEI10	HEI10A, HEI10B, OsHEI10, OsRING434, RING434	HUMAN ENHANCER OF INVASION 10	ZMM protein HEI10, human enhancer of invasion 10, Human enhancer of invasion10, RING-type E3 ubiquitin ligase 434, shorter hei10 1	HUMAN ENHANCER OF INVASION 10	hei10, hei10-1, hei10-2, Oshei10, oshei10, sh1	2	JQ624877, JQ624878. a homolog of human HEI10.  the most likely ortholog of (C. elegans) ZHP-3 and (Yeast) Zip3.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0232100	LOC_Os02g13810.2, LOC_Os02g13810.1				GO:0005694 - chromosome, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination, GO:0016567 - protein ubiquitination, GO:0008270 - zinc ion binding, GO:0009553 - embryo sac development, GO:0046872 - metal ion binding, GO:0016740 - transferase activity, GO:0007126 - meiosis, GO:0009556 - microsporogenesis, GO:0051026 - chiasma formation, GO:0005634 - nucleus, GO:0009555 - pollen development, GO:0005712 - chiasma	TO:0000455 - seed set percent, TO:0000245 - pollen free, TO:0000053 - pollen sterility, TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000416 - embryosac abortion	PO:0001007 - pollen development stage 
12254	_	OsDPR	_	dwarf phenotype-related gene			11	DQ434846.	 Tolerance and resistance - Stress tolerance								
12255	_	BRK1	_	Bub1-related kinase 1		brk1, brk1-1, brk1-2	7	the closest plant homolog of Bub1 (budding uninhibited by benzimidazole 1) from animals and yeast. EEC82122, EEE67244, JQ990990.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Biochemical character	Os07g0508500 	LOC_Os07g32480.1				GO:0007126 - meiosis, GO:0007094 - mitotic cell cycle spindle assembly checkpoint, GO:0045144 - meiotic sister chromatid segregation, GO:0000776 - kinetochore, GO:0007067 - mitosis, GO:0051323 - metaphase, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000485 - sterility related trait	
12256	IMPA1A	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a	IMPORTIN ALPHA 1A	importin-alpha1a, importin a1a, importin alpha1a	IMPORTIN ALPHA		1	Q71VM4. AB004814, AB004660. a cytoplasm/nuclear shuttle protein. GO:0140426: PAMP-triggered immunity signalling pathway. 	 Tolerance and resistance - Disease resistance	Os01g0253300 	LOC_Os01g14950.1				GO:0042742 - defense response to bacterium, GO:0005618 - cell wall, GO:0006606 - protein import into nucleus, GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0031349 - positive regulation of defense response, GO:0005634 - nucleus, GO:0010200 - response to chitin, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0008565 - protein transporter activity, GO:0019048 - virus-host interaction, GO:0048471 - perinuclear region of cytoplasm, GO:0005635 - nuclear envelope, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance	
12257	_	OsVPS22	_	VPS22 component of ESCRT-II complex, ESCRT-II complex VPS22 component		vps22	9	a homolog of the Vps22 subunit of the yeast ESCRT-II complex. LOC_Os09g36020. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Seed - Physiological traits	Os09g0529700	LOC_Os09g36020.1						
12258	FLT1		FLOWERING TIME 1			flt1-1	8	identified by using a late heading mutant (KGM26). FLT1 might share the same locus as EHD3 (Ichitani et al. 2014).	 Reproductive organ - Heading date								
12259	FLT2		FLOWERING TIME 2			flt2-1	9	identified by using a late heading mutant (KGM27).	 Reproductive organ - Heading date								
12260	_	OsECS, ECS, GSH2, OsGSH2	_	gamma-glutamylcysteine synthetase			5	AJ508916. Q8GU95, Q688Q9.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os05g0129000	LOC_Os05g03820.3, LOC_Os05g03820.1, LOC_Os05g03820.2				GO:0006750 - glutathione biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0010193 - response to ozone, GO:0019761 - glucosinolate biosynthetic process, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0004357 - glutamate-cysteine ligase activity, GO:0046688 - response to copper ion, GO:0009409 - response to cold, GO:0009908 - flower development, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0052544 - callose deposition in cell wall during defense response, GO:0009700 - indole phytoalexin biosynthetic process	TO:0000021 - copper sensitivity, TO:0000303 - cold tolerance	
12261	GEBP3	OsGeBP3, GeBP3	GLABROUS1 ENHANCER-BINDING PROTEIN 3	CentO-binding protein, GLABROUS1 Enhancer-Binding Protein 3	GLABROUS1 ENHANCER-BINDING PROTEIN 3		2	DUF573 domain-containing. PO:0030123: panicle inflorescence.		Os02g0288200	LOC_Os02g18660.1				GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009038 - palea , PO:0009037 - lemma , PO:0000003 - whole plant , PO:0009051 - spikelet 
12262	GLUBX	OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7, GluB4, OsGluB4	GLUTELIN BX	endosperm-specific gene 31, Glutelin2.1	GLUTELIN BX		2	JQ694715, JQ694716. BAF08323. Q0E2G5, A2X2V1. GLU2.1 in Xu et al. 2016. GluB7 in Liu et al. 2023. GluB4 in Peng et al. 2024.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os02g0242600 	LOC_Os02g14600.1				GO:0000003 - reproduction, GO:0048316 - seed development, GO:0045735 - nutrient reservoir activity, GO:0009651 - response to salt stress, GO:0009415 - response to water, GO:0009791 - post-embryonic development	TO:0000237 - water stress trait, TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
12263	CYP714B1	OsCYP714B1	P-450 714B1	Cytochrome P450 714B1	CYTOCHROME P450 714B1	cyp714b1	7	CYP714B1 encodes gibberellin 13-oxidase. Transgenic Arabidopsis plants that overexpress CYP714B1 show semidwarfism. Q7XHW5.	 Biochemical character,  Vegetative organ - Culm	Os07g0681300	LOC_Os07g48330.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0020037 - heme binding	TO:0000207 - plant height, TO:0002675 - gibberellic acid content	
12264	CYP714B2	OsCYP714B2	P-450 714B2	Cytochrome P450 714B2	CYTOCHROME P450 714B2	cyp714b2	3	Q0DS59. CYP714B2 encodes gibberellin 13-oxidase. Transgenic Arabidopsis plants that overexpress CYP714B2 show semidwarfism.	 Reproductive organ - panicle,  Biochemical character	Os03g0332100	LOC_Os03g21400.1, LOC_Os03g21419.1				GO:0009685 - gibberellin metabolic process, GO:0016020 - membrane, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0010229 - inflorescence development, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000621 - inflorescence development trait, TO:0000207 - plant height	PO:0001083 - inflorescence development stage 
12265	CYP714C1	CYP714C1	P-450 714C1	Cytochrome P450 714C1	CYTOCHROME P450 714C1		12	B9GBJ9.	 Biochemical character	Os12g0118900	LOC_Os12g02630.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity		
12266	CYP714C2	CYP714C2	P-450 714C2	Cytochrome P450 714C2	CYTOCHROME P450 714C2		12	Q2QYH7.	 Biochemical character	Os12g0119000	LOC_Os12g02640.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity		
12267	CYP714C3	CYP714C3, OsRING155, RING155	P-450 714C3	Cytochrome P450 714C3, RING-type E3 ubiquitin ligase 155	CYTOCHROME P450 714C3		11		 Biochemical character	Os11g0119200	LOC_Os11g02670.1				GO:0008270 - zinc ion binding		
12268	_	OsFH1, FH1	_	Formin homology 1, type I Formin, forming family protein 1, FH2 protein 1, FH2 domain protein 1	_	Osfh1, Osfh1-1, Osfh1-2, Osfh1-3	1	Q8S0F0.	 Vegetative organ - Root	Os01g0897700	LOC_Os01g67240.1				GO:0030036 - actin cytoskeleton organization, GO:0016020 - membrane, GO:0016021 - integral to membrane		
12269	WOX4	OsWOX4, Os WOX4	WUSCHEL-LIKE HOMEOBOX 4	WUSCHEL-related homeobox 4, WUSCHEL-RELATED HOMEOBOX4	WUSCHEL-LIKE HOMEOBOX 4		4	AJ556181. AM234750. Q7XTV3, Q25AM2. JF836159. GO:0060918: auxin transport. TO:0000975: grain width. GO:0099402: plant organ development. PO:0030123: panicle inflorescence.	 Other,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Vegetative organ - Shoot apical meristem(SAM)	Os04g0649400	LOC_Os04g55590.1				GO:0008285 - negative regulation of cell proliferation, GO:0009414 - response to water deprivation, GO:0009790 - embryonic development, GO:0006351 - transcription, DNA-dependent, GO:0051510 - regulation of unidimensional cell growth, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009926 - auxin polar transport, GO:0005634 - nucleus, GO:0009735 - response to cytokinin stimulus, GO:0048364 - root development, GO:0009555 - pollen development, GO:0009959 - negative gravitropism, GO:0009635 - response to herbicide, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0010073 - meristem maintenance, GO:0007275 - multicellular organismal development	TO:0000396 - grain yield, TO:0000095 - osmotic response sensitivity, TO:0000620 - embryo development trait, TO:0000227 - root length, TO:0006017 - meristem identity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000058 - herbicide sensitivity, TO:0000167 - cytokinin sensitivity, TO:0002693 - gravity response trait, TO:0000163 - auxin sensitivity, TO:0002692 - root meristem development, TO:0000734 - grain length, TO:0000391 - seed size, TO:0000207 - plant height	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0001007 - pollen development stage , PO:0009010 - seed 
12270	_	FOS1, OsCLE202, CLE202	_	FON2 SPARE1, CLV3/ESR-related 202, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 202			2	AB455110-AB455122. A2X462, Q6Z6T2. AB332053.	 Vegetative organ - Root,  Vegetative organ - Culm	Os02g0324400	LOC_Os02g21890.1				GO:0030154 - cell differentiation, GO:0005576 - extracellular region, GO:0007275 - multicellular organismal development		
12271	CLE402	FCP1, OsFCP1, FCP1/Os CLE402, Os CLE402, OsCLE402	CLV3/ESR-RELATED 402	FON2-LIKE CLE PROTEIN1, CLV3/ESR-related 402, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 402	CLV3/ESR-RELATED 402		4	AB354584. AB332065. 	 Vegetative organ - Shoot apical meristem(SAM),  Vegetative organ - Leaf	Os04g0473800	LOC_Os04g39770.1				GO:0048366 - leaf development	TO:0000655 - leaf development trait	
12272	_	FCP2	_	FON2-LIKE CLE PROTEIN2			6	AB354585.	 Vegetative organ - Shoot apical meristem(SAM)	Os06g0532500	LOC_Os06g34180.1						
12273	TAB1	Os WUS, WUS, OsWOX1, WOX1, OsWUS, OsTAB, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1, MOC3/TAB1/SRT1, DC1, OsDC1, DAP1, OsDAP1	TILLERS ABSENT 1	WUSCHEL, WUSCHEL-related homeobox 1, WUSCHEL-LIKE HOMEOBOX 1, WUS Orthologue, TILLERS ABSENT1, MONOCULM 3, completely sterile and reduced tillering 1, decreased culm number 1, Dwarf and aberrant panicle 1	WUSCHEL-LIKE HOMEOBOX 1	tab1, tab1-1, wus-1, moc3, moc3-1, moc3-2, moc3-3, moc3-4, moc3-5, moc3-6, srt1, dc1, Dap1	4	AB218894. AM234746. Q33DK0. Q7XM13. NCBI Gene Expression Omnibus under the accession number PRJNA853805. Gene ex- pression data GEO with the accession number: GSE228728. WUSCHEL in Ohmori et al. 2013. an Ortholog of WUSCHEL. TO:0000792: axillary bud number. KC611108-KC611120 (O. sativa and wild rice species, partial cds). the NCBI Sequence Read Archive (SRA) database (ac- cession number PRJNA635236. GO:0090506: axillary shoot meristem initiation. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Other	Os04g0663600	LOC_Os04g56780.1				GO:0048507 - meristem development, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development, GO:0043565 - sequence-specific DNA binding, GO:0009735 - response to cytokinin stimulus, GO:0010229 - inflorescence development, GO:0009733 - response to auxin stimulus	TO:0000621 - inflorescence development trait, TO:0000180 - spikelet fertility, TO:0000661 - tiller bud dormancy, TO:0000447 - filled grain number, TO:0000557 - secondary branch number, TO:0000276 - drought tolerance, TO:0000329 - tillering ability, TO:0000163 - auxin sensitivity, TO:0000358 - female sterility, TO:0002660 - cytokinin content, TO:0000657 - spikelet anatomy and morphology trait, TO:0000207 - plant height, TO:0000223 - pistil anatomy and morphology trait, TO:0000152 - panicle number, TO:0000436 - spikelet sterility, TO:0000346 - tiller number, TO:0000215 - stamen anatomy and morphology trait, TO:0000456 - spikelet number, TO:0000040 - panicle length	PO:0001083 - inflorescence development stage , PO:0007073 - 2 formation of axillary shoot stage 
12275	WOX5	OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L	WUSCHEL-LIKE HOMEOBOX 5	WUSCHEL-related homeobox 5	WUSCHEL-LIKE HOMEOBOX 5	wox2l	1	AM234749. Q8LR86, A2WWU7. OsWOX2 in in Nardmann and Werr 2006, Nardmann et al. 2007 and Ohmaori et al. 2013. up-regulated after fertilization (Abiko et al. 2013). WOX2L in Wang et al. 2019. GO:1990110: callus formation.	 Seed - Physiological traits - Storage substances,  Other,  Seed - Morphological traits	Os01g0840300 	LOC_Os01g62310.1				GO:0003700 - transcription factor activity, GO:0007275 - multicellular organismal development, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0048316 - seed development, GO:0009790 - embryonic development, GO:0009960 - endosperm development, GO:0006351 - transcription, DNA-dependent	TO:0000428 - callus induction, TO:0002653 - endosperm storage protein content, TO:0000696 - starch content	PO:0009089 - endosperm 
12277	_	UTR319	_	UV Tolerant Rice 319		utr319	7	Os07g0264900 and Os07g0265100, were predicted to represent the mutant allele.	 Tolerance and resistance - Stress tolerance	Os07g0265100	LOC_Os07g16150.1						
12278	HSP70CP1	OsHsp70CP1, cpHSP70-1, OsHsp70cp-1, Hsp70cp-1	HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 1	heat shock protein 70 chloroplast protein 1, plastid HSP70-1, plastid-localized 70-kDa heat shock protein 1	HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 1	oshsp70cp1	5	DNAK family protein. GO:0044183: protein folding chaperone.	 Tolerance and resistance - Stress tolerance	Os05g0303000	LOC_Os05g23740.1				GO:0034620 - cellular response to unfolded protein, GO:0006986 - response to unfolded protein, GO:0009507 - chloroplast, GO:0034605 - cellular response to heat, GO:0005524 - ATP binding, GO:0042623 - ATPase activity, coupled, GO:0031072 - heat shock protein binding, GO:0051787 - misfolded protein binding, GO:0051082 - unfolded protein binding, GO:0016887 - ATPase activity, GO:0042026 - protein refolding, GO:0005737 - cytoplasm, GO:0051085 - chaperone mediated protein folding requiring cofactor		
12279	GDCH	OsGDCH	GLYCINE DECARBOXYLASE H	glycine decarboxylase H, H protein of glycine cleavage system, mitochondrial Glycine Cleavage system H proten	GLYCINE DECARBOXYLASE H		10	A3C6G9. A2Z9B8. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0516100	LOC_Os10g37180.1				GO:0005634 - nucleus, GO:0005960 - glycine cleavage complex, GO:0009579 - thylakoid, GO:0019464 - glycine decarboxylation via glycine cleavage system, GO:0009507 - chloroplast, GO:0010224 - response to UV-B, GO:0005739 - mitochondrion	TO:0000432 - temperature response trait, TO:0000601 - UV-B light sensitivity	
12280	_	Os-NOT2, OsNOT2	_	Negative on TATA less2			2	LOC_Os02g54210.			LOC_Os02g54210						
12281	MIR528	miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2	MICRORNA528	MICRORNA528, osa-miRNA528, os-miRNA528	_	MIR528-A1, MIR528-A2, mir528	3	miRBASE accession: MI0003201. LM379808. OsMIR528 target genes: Os03g0129400, Os06g0567900, Os08g0137400, Os06g0154200, and Os07g0570550. the predicted target genes: LOC_Os01g57990 (no RAPID), Os01g0775100. GO:1901002: positive regulation of response to salt stress.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance						GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0009414 - response to water deprivation, GO:0009846 - pollen germination, GO:0042742 - defense response to bacterium, GO:0009555 - pollen development, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0010208 - pollen wall assembly, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0048573 - photoperiodism, flowering, GO:0050801 - ion homeostasis, GO:0009812 - flavonoid metabolic process, GO:0048236 - plant-type spore development, GO:0009651 - response to salt stress, GO:0007623 - circadian rhythm, GO:0007568 - aging, GO:0035195 - gene silencing by miRNA	TO:0000276 - drought tolerance, TO:0000328 - sucrose content, TO:0000333 - sugar content, TO:0000303 - cold tolerance, TO:0002616 - flowering time, TO:0000175 - bacterial blight disease resistance, TO:0006005 - fructose content, TO:0000727 - sporogenesis, TO:0000455 - seed set percent, TO:0000437 - male sterility, TO:0006001 - salt tolerance, TO:0000137 - days to heading	PO:0025281 - pollen , PO:0001015 - K second mitotic division stage , PO:0001016 - L mature pollen stage , PO:0001059 - J bicellular pollen stage , PO:0009066 - anther , PO:0001007 - pollen development stage 
12282	MIR529A	miR529a, Osa-miR529a, OsmiR529a	MICRORNA529A	MICRORNA529a, osa-miRNA529a, os-miRNA529a	_		2	miRBASE accession: MI0003202. predicted target(s): SBP transcription factors. LM379809. Target: OsDjA5 (Os03g0787300). TO:0020093: nitrogen content. 	 Reproductive organ - Panicle, Mode of branching,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000050 - inflorescence branching, TO:0000329 - tillering ability, TO:0000346 - tiller number	
12283	_	miR529b, Osa-miR529b, OsmiR529b	_	MICRORNA529b, osa-miRNA529b, os-miRNA529b	_				 Other								
12284	MIR530	miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p	MICRORNA530	MICRORNA530, osa-miRNA530, os-miRNA530	_		4	miRBASE accession: MI0003203. LM379810. predicted target: Os03g0738400. the target of lncRNA XLOC_028297. TO:0000847: panicle inflorescence morphology trait. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Other,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance						GO:0040008 - regulation of growth, GO:0016442 - RNA-induced silencing complex, GO:0002213 - defense response to insect, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold	TO:0000470 - vascular tissue related trait, TO:0000303 - cold tolerance, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000371 - yield trait, TO:0000074 - blast disease, TO:0000050 - inflorescence branching, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000546 - peduncle top diameter, TO:0000391 - seed size, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000276 - drought tolerance, TO:0000424 - brown planthopper resistance	PO:0009010 - seed , PO:0020103 - flag leaf , PO:0005004 - shoot node , PO:0009009 - plant embryo , PO:0009005 - root 
12285	SNDP1	OsSNDP1, OsSec14-24, Sec14-24	SEC14-NODULIN DOMAIN PROTEIN 1	Sec14-nodulin domain-containing protein 1, Sec14-nodulin domain protein 1, SEC14 domain protein 24, Sec14 protein 24	SEC14-NODULIN DOMAIN PROTEIN 1	Ossndp1, Ossndp1-1	10	OsSNDP1 is functionally orthologous to AtSFH1/COW1. PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Vegetative organ - Root	Os10g0122600	LOC_Os10g03400.2				GO:0005215 - transporter activity, GO:0005622 - intracellular		
12286	SNDP2	OsSNDP2, OsSec14-8, Sec14-8	SEC14-NODULIN DOMAIN PROTEIN 2	Sec14-nodulin domain-containing protein 2, Sec14-nodulin domain protein 2, SEC14 domain protein 8, Sec14 protein 8	SEC14-NODULIN DOMAIN PROTEIN 2		2	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character	Os02g0440900	LOC_Os02g24430.2, LOC_Os02g24430.1				GO:0005215 - transporter activity, GO:0005622 - intracellular		
12287	SNDP3	OsSNDP3, OsSec14-6, Sec14-6	SEC14-NODULIN DOMAIN PROTEIN 3	Sec14-nodulin domain-containing protein 3, Sec14-nodulin domain protein 3, SEC14 domain protein 6, Sec14 protein 6	SEC14-NODULIN DOMAIN PROTEIN 3		2	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character	Os02g0133200	LOC_Os02g04030.1, LOC_Os02g04030.2, LOC_Os02g04030.3				GO:0005215 - transporter activity, GO:0005622 - intracellular		
12288	SNDP4	OsSNDP4, OsSec14-5, Sec14-5	SEC14-NODULIN DOMAIN PROTEIN 4	Sec14-nodulin domain-containing protein 4, Sec14-nodulin domain protein 4, SEC14 domain protein 5, Sec14 protein 5	SEC14-NODULIN DOMAIN PROTEIN 4		2	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0133100	LOC_Os02g04020.1				GO:0005215 - transporter activity, GO:0050832 - defense response to fungus, GO:0005622 - intracellular	TO:0000074 - blast disease	
12290	SNDP6	OsSNDP6, OsSec14-16, Sec14-16	SEC14-NODULIN DOMAIN PROTEIN 6	Sec14-nodulin domain-containing protein 6, Sec14-nodulin domain protein 6, SEC14 domain protein 16, Sec14 protein 16	SEC14-NODULIN DOMAIN PROTEIN 6		5	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0545000	LOC_Os05g46720.1, LOC_Os05g46720.2				GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0005622 - intracellular, GO:0050832 - defense response to fungus, GO:0016020 - membrane	TO:0000074 - blast disease	
12291	SNDP7	OsSNDP7, OsSec14-20, Sec14-20	SEC14-NODULIN DOMAIN PROTEIN 7	Sec14-nodulin domain-containing protein 7, Sec14-nodulin domain protein 7, SEC14 domain protein 20, Sec14 protein 20	SEC14-NODULIN DOMAIN PROTEIN 7		8	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os08g0341700	LOC_Os08g25310.1				GO:0005215 - transporter activity, GO:0016021 - integral to membrane, GO:0005622 - intracellular, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
12292	SNDP8	OsSNDP8, OsSec14-9, Sec14-9	SEC14-NODULIN DOMAIN PROTEIN 8	Sec14-nodulin domain-containing protein 8, Sec14-nodulin domain protein 8, SEC14 domain protein 9, Sec14 protein 9	SEC14-NODULIN DOMAIN PROTEIN 8		2	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.		Os02g0721800	LOC_Os02g48990.1						
12293	SNDP9	OsSNDP9, OsSec14-21, Sec14-21	SEC14-NODULIN DOMAIN PROTEIN 9	Sec14-nodulin domain-containing protein 9, Sec14-nodulin domain protein 9, SEC14 domain protein 21, Sec14 protein 21	SEC14-NODULIN DOMAIN PROTEIN 9		8	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0497300	LOC_Os08g38850.1, LOC_Os08g38850.2				GO:0050832 - defense response to fungus, GO:0005215 - transporter activity, GO:0005622 - intracellular	TO:0000074 - blast disease	
12294	SNDP10	OsSNDP10, OsSec14-23, Sec14-23	SEC14-NODULIN DOMAIN PROTEIN 10	Sec14-nodulin domain-containing protein 10, Sec14-nodulin domain protein 10, SEC14 domain protein 23, Sec14 protein 23	SEC14-NODULIN DOMAIN PROTEIN 10		9	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.		Os09g0481100	LOC_Os09g30330.1						
12295	_	EMP5, Os EMP5, OsEMP5	_	Empty Pericarp5			1	Rice EMP5 protein is a putative ortholog of EMP5 in maize (ZmEMP5). Rice Emp5 is essential to seed development in rice.	 Seed	Os01g0959600	LOC_Os01g72930.1						
12296	MADS61	OsMADS61, MADS-27b	MADS BOX GENE 61	MADS box gene61, MADS box gene 61, MADS-box transcription factor 61	MADS-BOX TRANSCRIPTION FACTOR 61		4	MADS-27b in Yan et al. 2014. one of the miR444 target genes. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Root	Os04g0461300	LOC_Os04g38770.1, LOC_Os04g38780.1				GO:0010423 - negative regulation of brassinosteroid biosynthetic process, GO:0060359 - response to ammonium ion, GO:0048364 - root development, GO:0009742 - brassinosteroid mediated signaling, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016036 - cellular response to phosphate starvation	TO:0000656 - root development trait, TO:0000227 - root length, TO:0002676 - brassinosteroid content, TO:0000168 - abiotic stress trait	PO:0009005 - root , PO:0007520 - root development stage 
12297	MADS59	OsMADS59	MADS BOX GENE 59	MADS box gene59, MADS box gene 59, MADS-box transcription factor 59	MADS-BOX TRANSCRIPTION FACTOR 59		6		 Other	Os06g0347700	LOC_Os06g23950.1, LOC_Os06g23980.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
12298	MADS60	OsMADS60, qHd2-1	MADS BOX GENE 60	MADS box gene60, MADS box gene 60, MADS-box transcription factor 60, QTL for heading date 2-1	MADS-BOX TRANSCRIPTION FACTOR 60		2		 Reproductive organ - Heading date	Os02g0104200	LOC_Os02g01360.1, LOC_Os02g01365.1				GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading	
12299	MADS62	OsMADS62	MADS BOX GENE 62	MADS box gene62, MADS box gene 62, MADS-box transcription factor 62	MADS-BOX TRANSCRIPTION FACTOR 62		8	FM956504.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0494100	LOC_Os08g38590.1				GO:0003677 - DNA binding, GO:0009846 - pollen germination, GO:0080092 - regulation of pollen tube growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009555 - pollen development	TO:0000437 - male sterility	PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0025281 - pollen 
12300	MADS63	OsMADS63	MADS BOX GENE 63	MADS box gene63, MADS box gene 63, MADS-box transcription factor 63	MADS-BOX TRANSCRIPTION FACTOR 63	mads63	6	FN663130.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other	Os06g0223300	LOC_Os06g11970.1				GO:0080092 - regulation of pollen tube growth, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009555 - pollen development, GO:0009846 - pollen germination, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000437 - male sterility	PO:0025281 - pollen , PO:0001007 - pollen development stage , PO:0009066 - anther 
12301	MADS64	OsMADS64, DLN110, OsDLN110	MADS BOX GENE 64	MADS box gene64, MADS box gene 64, MADS-box transcription factor 64, DLN repressor 110, DLN motif protein 110	MADS-BOX TRANSCRIPTION FACTOR 64		4				LOC_Os04g31804.1						
12302	MADS66	OsMADS66	MADS BOX GENE 66	MADS box gene66, MADS box gene 66, MADS-box transcription factor 66	MADS-BOX TRANSCRIPTION FACTOR 66		5	LOC_Os05g11380.			LOC_Os05g11380						
12303	MADS67	OsMADS67	MADS BOX GENE 67	MADS box gene67, MADS box gene 67, MADS-box transcription factor 67	MADS-BOX TRANSCRIPTION FACTOR 67		12	LOC_Os12g31010 (not found in MSU Rice Genome Annotation Project Release 7 data). ABA98556 (Record removed).									
12304	MADS68	OsMADS68	MADS BOX GENE 68	MADS box gene68, MADS box gene 68, MADS-box transcription factor 68	MADS-BOX TRANSCRIPTION FACTOR 68		11	FM956505.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0658700	LOC_Os11g43740.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009555 - pollen development, GO:0009846 - pollen germination, GO:0080092 - regulation of pollen tube growth, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0025281 - pollen , PO:0009066 - anther 
12305	MADS69	OsMADS69	MADS BOX GENE 69	MADS box gene69, MADS box gene 69, MADS-box transcription factor 69	MADS-BOX TRANSCRIPTION FACTOR 69		8	LOC_Os08g20460 (not found in MSU Rice Genome Annotation Project Release 7 data).									
12306	MADS70	OsMADS70	MADS BOX GENE 70	MADS box gene70, MADS box gene 70, MADS-box transcription factor 70	MADS-BOX TRANSCRIPTION FACTOR 70		5		 Other	Os05g0303400	LOC_Os05g23780.1				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
12307	MADS71	OsMADS71	MADS BOX GENE 71	MADS box gene71, MADS box gene 71, MADS-box transcription factor 71	MADS-BOX TRANSCRIPTION FACTOR 71		6		 Other	Os06g0333700	LOC_Os06g22760.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
12308	MADS72	OsMADS72	MADS BOX GENE 72	MADS box gene72, MADS box gene 72, MADS-box transcription factor 72	MADS-BOX TRANSCRIPTION FACTOR 72		3	LOC_Os03g14850. Os03g0253400 (in Rap1 (build3) ,Rap2 (build4)).	 Other		LOC_Os03g14850				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
12309	MADS73	OsMADS73	MADS BOX GENE 73	MADS box gene73, MADS box gene 73, MADS-box transcription factor 73	MADS-BOX TRANSCRIPTION FACTOR 73		12		 Other	Os12g0407000	LOC_Os12g21850.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
12310	MADS74	OsMADS74	MADS BOX GENE 74	MADS box gene74, MADS box gene 74, MADS-box transcription factor 74	MADS-BOX TRANSCRIPTION FACTOR 74		12		 Other						GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
12311	MADS75	OsMADS75	MADS BOX GENE 75	MADS box gene75, MADS box gene 75, MADS-box transcription factor 75	MADS-BOX TRANSCRIPTION FACTOR 75		6		 Other	Os06g0504100	LOC_Os06g30810.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
12312	MADS76	OsMADS76	MADS BOX GENE 76	MADS box gene76, MADS box gene 76, MADS-box transcription factor 76	MADS-BOX TRANSCRIPTION FACTOR 76		6										
12313	MADS77	OsMADS77	MADS BOX GENE 77	MADS box gene77, MADS box gene 77, MADS-box transcription factor 77	MADS-BOX TRANSCRIPTION FACTOR 77		9	a gene in rice zygotes with paternal allele-dependent expression.		Os09g0116000	LOC_Os09g02780.1						
12314	MADS78	OsMADS78	MADS BOX GENE 78	MADS box gene78, MADS box gene 78, MADS-box transcription factor 78	MADS-BOX TRANSCRIPTION FACTOR 78	mads78_17, mads78_19	9	GO:0071704: organic substance metabolic process. GO:1901135: carbohydrate derivative metabolic process.	 Seed - Morphological traits - Endosperm,  Other,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Reproductive organ - Pollination, fertilization, fertility	Os09g0116800	LOC_Os09g02830.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0010581 - regulation of starch biosynthetic process, GO:0010252 - auxin homeostasis, GO:0010342 - cellularization of endosperm, GO:0080050 - regulation of seed development, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000391 - seed size, TO:0000598 - protein content, TO:0002658 - starch grain synthesis, TO:0000484 - seed shape, TO:0000592 - 1000-dehulled grain weight, TO:0000436 - spikelet sterility, TO:0002653 - endosperm storage protein content, TO:0000300 - glucose content, TO:0006005 - fructose content, TO:0000162 - seed quality, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
12315	MADS79	OsMADS79	MADS BOX GENE 79	MADS box gene79, MADS box gene 79, MADS-box transcription factor 79	MADS-BOX TRANSCRIPTION FACTOR 79	mads79_23 and mads79_24	1	GO:0071704: organic substance metabolic process. GO:1901135: carbohydrate derivative metabolic process.	 Other,  Seed - Morphological traits - Grain shape,  Seed - Morphological traits - Endosperm,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Physiological traits - Storage substances	Os01g0975800	LOC_Os01g74440.1				GO:0051171 - regulation of nitrogen compound metabolic process, GO:0006351 - transcription, DNA-dependent, GO:0010252 - auxin homeostasis, GO:0080050 - regulation of seed development, GO:0010581 - regulation of starch biosynthetic process, GO:0010342 - cellularization of endosperm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0002653 - endosperm storage protein content, TO:0000653 - seed development trait, TO:0000391 - seed size, TO:0000162 - seed quality, TO:0000592 - 1000-dehulled grain weight, TO:0002658 - starch grain synthesis, TO:0000484 - seed shape, TO:0000598 - protein content, TO:0000300 - glucose content, TO:0006005 - fructose content	PO:0001170 - seed development stage , PO:0009010 - seed 
12316	MADS80	OsMADS80	MADS BOX GENE 80	MADS box gene80, MADS box gene 80, MADS-box transcription factor 80	MADS-BOX TRANSCRIPTION FACTOR 80		2		 Other	Os02g0164450	LOC_Os02g06860.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
12317	MADS81	OsMADS81	MADS BOX GENE 81	MADS box gene81, MADS box gene 81, MADS-box transcription factor 81	MADS-BOX TRANSCRIPTION FACTOR 81		4	LOC_Os04g24790.	 Other		LOC_Os04g24790				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
12318	MADS82	OsMADS82	MADS BOX GENE 82	MADS box gene82, MADS box gene 82, MADS-box transcription factor 82	MADS-BOX TRANSCRIPTION FACTOR 82		4		 Other	Os04g0313200	LOC_Os04g24800.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
12319	MADS83	OsMADS83	MADS BOX GENE 83	MADS box gene83, MADS box gene 83, MADS-box transcription factor 83	MADS-BOX TRANSCRIPTION FACTOR 83		4		 Other	Os04g0313400	LOC_Os04g24810.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
12320	MADS84	OsMADS84	MADS BOX GENE 84	MADS box gene84, MADS box gene 84, MADS-box transcription factor 84	MADS-BOX TRANSCRIPTION FACTOR 84		4		 Other	Os04g0324900	LOC_Os04g25870.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
12321	MADS85	OsMADS85	MADS BOX GENE 85	MADS box gene85, MADS box gene 85, MADS-box transcription factor 85	MADS-BOX TRANSCRIPTION FACTOR 85		4	LOC_Os04g25920.	 Other		LOC_Os04g25920				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
12322	MADS86	OsMADS86	MADS BOX GENE 86	MADS box gene86, MADS box gene 86, MADS-box transcription factor 86	MADS-BOX TRANSCRIPTION FACTOR 86		3	LOC_Os03g37670.	 Other		LOC_Os03g37670				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
12323	MADS87	OsMADS87	MADS BOX GENE 87	MADS box gene87, MADS box gene 87, MADS-box transcription factor 87	MADS-BOX TRANSCRIPTION FACTOR 87		3	GO:0000987: proximal promoter sequence-specific DNA binding.	 Other	Os03g0582400	LOC_Os03g38610.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0046983 - protein dimerization activity, GO:0006355 - regulation of transcription, DNA-dependent		
12324	MADS88	OsMADS88, DLN7, OsDLN7	MADS BOX GENE 88	MADS box gene88, MADS box gene 88, MADS-box transcription factor 88, DLN repressor 7, DLN motif protein 7	MADS-BOX TRANSCRIPTION FACTOR 88		1		 Other		LOC_Os01g18420.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
12325	MADS89	OsMADS89	MADS BOX GENE 89	MADS box gene89, MADS box gene 89, MADS-box transcription factor 89	MADS-BOX TRANSCRIPTION FACTOR 89		1		 Other,  Seed - Morphological traits - Endosperm	Os01g0288100	LOC_Os01g18440.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0010342 - cellularization of endosperm		
12326	MADS90	OsMADS90	MADS BOX GENE 90	MADS box gene90, MADS box gene 90, MADS-box transcription factor 90	MADS-BOX TRANSCRIPTION FACTOR 90		7			Os07g0133900	LOC_Os07g04170.1						
12327	MADS91	OsMADS91	MADS BOX GENE 91	MADS box gene91, MADS box gene 91, MADS-box transcription factor 91	MADS-BOX TRANSCRIPTION FACTOR 91		1			Os01g0213300	LOC_Os01g11510.1						
12328	MADS92	OsMADS92	MADS BOX GENE 92	MADS box gene92, MADS box gene 92, MADS-box transcription factor 92	MADS-BOX TRANSCRIPTION FACTOR 92		1			Os01g0340000	LOC_Os01g23750.1						
12329	MADS93	OsMADS93	MADS BOX GENE 93	MADS box gene93, MADS box gene 93, MADS-box transcription factor 93	MADS-BOX TRANSCRIPTION FACTOR 93		1		 Other	Os01g0340100	LOC_Os01g23760.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
12330	MADS94	OsMADS94	MADS BOX GENE 94	MADS box gene94, MADS box gene 94, MADS-box transcription factor 94	MADS-BOX TRANSCRIPTION FACTOR 94		1			Os01g0340200	LOC_Os01g23770.1						
12331	MADS95	OsMADS95	MADS BOX GENE 95	MADS box gene95, MADS box gene 95, MADS-box transcription factor 95	MADS-BOX TRANSCRIPTION FACTOR 95		1			Os01g0340400	LOC_Os01g23780.1						
12332	MADS96	OsMADS96	MADS BOX GENE 96	MADS box gene96, MADS box gene 96, MADS-box transcription factor 96	MADS-BOX TRANSCRIPTION FACTOR 96		1		 Other	Os01g0906300	LOC_Os01g67890.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
12333	MADS97	OsMADS97	MADS BOX GENE 97	MADS box gene97, MADS box gene 97, MADS-box transcription factor 97	MADS-BOX TRANSCRIPTION FACTOR 97		1			Os01g0912400	LOC_Os01g68420.1				GO:0003677 - DNA binding		
12334	MADS98	OsMADS98	MADS BOX GENE 98	MADS box gene98, MADS box gene 98, MADS-box transcription factor 98	MADS-BOX TRANSCRIPTION FACTOR 98		1			Os01g0913900	LOC_Os01g68560.1						
12335	MADS99	OsMADS99	MADS BOX GENE 99	MADS box gene99, MADS box gene 99, MADS-box transcription factor 99	MADS-BOX TRANSCRIPTION FACTOR 99		4			Os04g0325600	LOC_Os04g25930.1						
12336	MADS37	OsMADS37, DLN217, OsDLN217	MADS BOX GENE 37	MADS box gene37, MADS box gene 37, MADS-box transcription factor 37, DLN repressor 217, DLN motif protein 217	MADS-BOX TRANSCRIPTION FACTOR 37		8		 Other	Os08g0531900	LOC_Os08g41960.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
12338	RLCK185	OsRLCK185	RECEPTOR-LIKE CYTOPLASMIC KINASE 185	Receptor-like Cytoplasmic Kinase 185	RECEPTOR-LIKE CYTOPLASMIC KINASE 185	Osrlck185, Osrlck185-1, Osrlck185-2, Osrlck185-3	5	a rice ortholog of PBL27. GO:0035420: MAPK cascade involved in innate immune response. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1904427: positive regulation of calcium ion transmembrane transport. GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os05g0372100	LOC_Os05g30870.3, LOC_Os05g30870.1, LOC_Os05g30870.2				GO:0043410 - positive regulation of MAPKKK cascade, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0002213 - defense response to insect, GO:0010200 - response to chitin, GO:0032491 - detection of molecule of fungal origin	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance, TO:0000424 - brown planthopper resistance	
12339	RLCK55	OsRLCK55	RECEPTOR-LIKE CYTOPLASMIC KINASE 55	Receptor-like Cytoplasmic Kinase 55	RECEPTOR-LIKE CYTOPLASMIC KINASE 55	Osrlck55	1	GO:0140426: PAMP-triggered immunity signalling pathway. GO:1904427: positive regulation of calcium ion transmembrane transport.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os01g0936100	LOC_Os01g71000.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
12340	COX11	OsCOX11	CYTOCHROME OXIDASE 11	cytochrome oxidase 11	CYTOCHROME OXIDASE 11	oscox11	3	EF431929. a nuclear-encoded mitochondrial protein. GO:1904960: positive regulation of cytochrome-c oxidase activity. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness	Os03g0718600	LOC_Os03g50940.2, LOC_Os03g50940.1				GO:0050832 - defense response to fungus, GO:0043621 - protein self-association, GO:0005739 - mitochondrion, GO:0010101 - post-embryonic root morphogenesis, GO:0009846 - pollen germination, GO:0005507 - copper ion binding, GO:0032592 - integral to mitochondrial membrane	TO:0000074 - blast disease, TO:0000053 - pollen sterility, TO:0000357 - growth and development trait	
12341	_	WA352	_	Wild Abortive 352			Mt	a causal gene for Wild Abortive CMS (CMS-WA). JX131325.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion, GO:0016021 - integral to membrane	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0009071 - anther wall tapetum 
12342	_	Rf4, Rf-4, PPR782a, PPR9, PPR3	_	restorer-of-fertility 4, fertility restorer 4, pentatricopeptide repeat (PPR)-encoding gene 782a, pentatricopeptide repeat-containing protein 782a, pentatricopeptide repeat protein 9, pentatricopeptide repeat motif containing gene 3, PPR motif-containing gene 3		rf4, Rf4-M, rf4-j, rf4-i, PPR9-782-M, PPR9-782-N, PPR9-782-I, PPR9-782-ZH, PPR9-409-J, PPR9-409-Z, PPR9-409-93	10	AB110443. AB900792. Two genes PPR683 and PPR762 were considered as candidate genes in the Rf4 locus. KJ680247-KJ680250. PPR3 in Ngangkham et al. 2010. PPR9 in Tang et al. 2014. PPR782a in Kazama and Toriyama 2014.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os10g0495200	LOC_Os10g35240.1, LOC_Os10g35240.2				GO:0005739 - mitochondrion	TO:0000308 - male fertility restoration trait, TO:0000421 - pollen fertility	
12343	CYP71Z2	Oscyp71Z2	P-450 71Z2	Cytochrome P450 71Z2	CYTOCHROME P450 71Z2		7	a casbene C5 oxidase. C4H in ShangGuan et al. 2022. GO:0044550: secondary metabolite biosynthetic process. GO:1990169: stress response to copper ion. GO:1990170: stress response to cadmium ion. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0217600 	LOC_Os07g11739.1				GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0042742 - defense response to bacterium, GO:0009411 - response to UV, GO:0050832 - defense response to fungus, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0002238 - response to molecule of fungal origin	TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0002669 - diterpenoid phytoalexin content, TO:0000160 - UV light sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
12344	CYP71Z1	Oscyp71Z1, OsCYP71Z7, CYP71Z7	P-450 71Z1	Cytochrome P450 71Z1	CYTOCHROME P450 71Z1		4	Os04g0339000 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)). BGIOSGA016146. OsCYP71Z7 in Sahoo et al. 2023. 	 Biochemical character		LOC_Os04g27020.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity		
12345	CYP71Z3	Oscyp71Z3	P-450 71Z3	Cytochrome P450 71Z3	CYTOCHROME P450 71Z3		10		 Biochemical character	Os10g0439700 	LOC_Os10g30380.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity		
12346	CYP71Z4	Oscyp71Z4, OsCYP71Z2, CYP71Z2	P-450 71Z4	Cytochrome P450 71Z4	CYTOCHROME P450 71Z4		10	AK287479. BGIOSGA031843. OsCYP71Z2 in Sahoo et al. 2023.	 Biochemical character	Os10g0439800 	LOC_Os10g30390.1				GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
12347	CYP71Z5	Oscyp71Z5, OsCYP71Z4, CYP71Z4	P-450 71Z5	Cytochrome P450 71Z5	CYTOCHROME P450 71Z5		2	BGIOSGA006339. OsCYP71Z4 in Sahoo et al. 2023.	 Biochemical character	Os02g0529800 	LOC_Os02g32770.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity		
12348	CYP71Z8	Oscyp71Z8, OsCYP71Z3, CYP71Z3	P-450 71Z8	Cytochrome P450 71Z8	CYTOCHROME P450 71Z8		10	BGIOSGA031842. OsCYP71Z3 in Sahoo et al. 2023.	 Biochemical character	Os10g0439924	LOC_Os10g30410.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding		
12349	TA2	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1, ROS1A/DNG702, DNG702, OsDNG702	THICK ALEURONE 2	REPRESSOR OF SILENCING 1a, REPRESSOR OF SILENCING 1, thick aleurone 2, DNA glycosylase 702		osros1, osros1a, ros1a, ta2-1, ta2-2, ta2-3, ta2-4, ta2-5, ta2-6	1	a rice homolog of DME (DEMETER family DNA glycosylases). ROS ortholog. 5-methylcytosine DNA glycosylase. TO:0000942: aleurone layer morphology trait. GO:0035514: DNA demethylase activity. TO:0020076: phenolic compound content. TO:1000075: palmitic acid content. TO:0000975: grain width. TO:0001109: grain color trait.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Dormancy	Os01g0218032	LOC_Os01g11900.1				GO:0046686 - response to cadmium ion, GO:0009555 - pollen development, GO:0010162 - seed dormancy, GO:0005634 - nucleus, GO:0048229 - gametophyte development, GO:0080111 - DNA demethylation, GO:0006284 - base-excision repair, GO:0009960 - endosperm development, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009651 - response to salt stress, GO:0009790 - embryonic development, GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0048653 - anther development, GO:0048232 - male gamete generation, GO:0009553 - embryo sac development, GO:0016787 - hydrolase activity, GO:0007292 - female gamete generation, GO:0048316 - seed development	TO:0005002 - oleic acid content, TO:0001024 - phosphorus content, TO:0000345 - seed viability, TO:0000184 - seed anatomy and morphology trait, TO:0000421 - pollen fertility, TO:0000253 - seed dormancy, TO:0005001 - linoleic acid content, TO:0000146 - seed length, TO:0000149 - seed width, TO:0000696 - starch content, TO:0000196 - amylose content, TO:0000639 - seed fertility, TO:0000333 - sugar content, TO:0000653 - seed development trait, TO:0000734 - grain length, TO:0000484 - seed shape, TO:0000575 - endosperm related trait, TO:0000193 - embryo shape, TO:0000602 - total fat content, TO:0000598 - protein content, TO:0000465 - mineral and ion content related trait, TO:0006001 - salt tolerance, TO:0002642 - dietary fiber related trait, TO:0000390 - grain core percent white, TO:0002656 - starch grain shape, TO:0002655 - starch grain size, TO:0000397 - grain size, TO:0000104 - floury endosperm	PO:0001007 - pollen development stage , PO:0001170 - seed development stage , PO:0001004 - anther development stage 
12350	ROS1B	OsROS1B	REPRESSOR OF SILENCING 1B		REPRESSOR OF SILENCING 1B		2	a rice homolog of DME (DEMETER family DNA glycosylases). ROS1 ortholog.	 Biochemical character	Os02g0494700	LOC_Os02g29230.1				GO:0006284 - base-excision repair, GO:0004519 - endonuclease activity, GO:0051539 - 4 iron, 4 sulfur cluster binding		
12352	_	OsRRMh, RRMh	_	OsRRM homologue			9	HE995412. a Spen-like Gene. LOC_Os09g34070.	 Character as QTL - Yield and productivity	Os09g0516300	LOC_Os09g34070.1, LOC_Os09g34070.2				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding	TO:0000449 - grain yield per plant	
12353	_	OsRRM	_	RNA recognition motif			9	a Spen-like rice gene.		Os09g0298700	LOC_Os09g12730.1, LOC_Os09g12730.2				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
12354	SSI2	OsSSI2	SUPPRESSOR OF SALICYLATE INSENSITIVITY 2	"fatty-acid desaturase OsSSI2, suppressor of salicylate
insensitivity 2"		Osssi2-Tos17	1	a rice homolog of Arabidopsis SSI2 (suppressor of salicylateinsensitivity of npr1-5). Q8S059.	 Tolerance and resistance - Lesion mimic,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0919900	LOC_Os01g69080.1				GO:0006633 - fatty acid biosynthetic process, GO:0046914 - transition metal ion binding, GO:0031348 - negative regulation of defense response, GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity, GO:0002213 - defense response to insect, GO:0051607 - defense response to virus, GO:0009570 - chloroplast stroma, GO:0004768 - stearoyl-CoA 9-desaturase activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response	
12355	KRP2	OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2	KIP-RELATED PROTEIN 2	Cyclin-dependent kinase inhibitor 2, KIP-related protein 2, inhibitor of cyclin-dependent kinase 2	KIP-RELATED PROTEIN 2		6	LOC_Os06g11050. Q283L3. DQ229363. 	 Biochemical character	Os06g0213700	LOC_Os06g11050.1				GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0007050 - cell cycle arrest, GO:0005634 - nucleus, GO:0006469 - negative regulation of protein kinase activity		PO:0020094 - plant egg cell 
12356	KRP3	OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3	KIP-RELATED PROTEIN 3	Cyclin-dependent kinase inhibitor 3, KIP-related protein 3, inhibitor of cyclin-dependent kinase 3	KIP-RELATED PROTEIN 3		11	LOC_Os11g40030. Q2R185. DQ229364. KRP6/7 homolog in Wang et al. 2013.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0614800	LOC_Os11g40030.1, LOC_Os11g40030.2				GO:0007050 - cell cycle arrest, GO:0005634 - nucleus, GO:0006469 - negative regulation of protein kinase activity, GO:0004861 - cyclin-dependent protein kinase inhibitor activity	TO:0000350 - cms-hl type	
12357	KRP6	OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6, OsKRP5	KIP-RELATED PROTEIN 6	Cyclin-dependent kinase inhibitor 4, KIP-related protein 6, inhibitor of cyclin-dependent kinase 4	KIP-RELATED PROTEIN 6		9	Q67J15. BI306406. OsKRP5 in Zhang et al. 2021.	 Biochemical character	Os09g0459900	LOC_Os09g28580.1				GO:0006469 - negative regulation of protein kinase activity, GO:0009737 - response to abscisic acid stimulus, GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0007050 - cell cycle arrest, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity	
12358	KRP5	OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5	KIP-RELATED PROTEIN 5	Cyclin-dependent kinase inhibitor 5, KIP-related protein 5, inhibitor of cyclin-dependent kinase 5	KIP-RELATED PROTEIN 5		3	Q283L0. DQ229366.	 Biochemical character	Os03g0137800	LOC_Os03g04490.1				GO:0007050 - cell cycle arrest, GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0009737 - response to abscisic acid stimulus, GO:0006469 - negative regulation of protein kinase activity, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity	
12359	KRP4	OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6	KIP-RELATED PROTEIN 4	Cyclin-dependent kinase inhibitor 6, KIP-related protein 4, inhibitor of cyclin-dependent kinase 6	KIP-RELATED PROTEIN 4		10	BGIOSGA031706. Q7XDH8. AAG16867. Ancient CDK inhibitor DNA sequences of rice (Oryza sativa and other wild rice): JN169837-JN169841, JN169844-JN169856, JN169857, JN169858-JN169866, JN169867, JN169868-JN169879, JN169880-JN169885.	 Biochemical character	Os10g0471700	LOC_Os10g33310.1				GO:0006469 - negative regulation of protein kinase activity, GO:0009737 - response to abscisic acid stimulus, GO:0004861 - cyclin-dependent protein kinase inhibitor activity, GO:0005634 - nucleus, GO:0007050 - cell cycle arrest	TO:0000615 - abscisic acid sensitivity	
12360	CYCD2;1	CycD2;1, CYCD2-1, OsCYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2, OsCYCD2;2, CYCD2;2	D-TYPE CYCLIN 2;1	Cyclin-D2-1, cyclinD2;1	D-TYPE CYCLIN 2;1		7	Q8LHA8. Orysa;CycD2;2 in Mizutani et al. 2010. OsCYCD2;2 in Jiang et al. 2024.	 Biochemical character	Os07g0620800	LOC_Os07g42860.1				GO:0007049 - cell cycle, GO:0045787 - positive regulation of cell cycle, GO:0045840 - positive regulation of mitosis, GO:0051781 - positive regulation of cell division, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus		PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
12361	CYCA2;1	CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2	CYCLIN-A2-1	A-type cyclin 2;1	CYCLIN-A2-1		12	Q2QQ96. CYCA2.2 in Xu et al. 2014.	 Vegetative organ - Root,  Vegetative organ - Culm,  Biochemical character	Os12g0502300	LOC_Os12g31810.1				GO:0048364 - root development, GO:0010374 - stomatal complex development, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0042023 - DNA endoreduplication, GO:0051301 - cell division, GO:0048367 - shoot development	TO:0000207 - plant height, TO:0000566 - stomatal frequency, TO:0000227 - root length	
12362	CYCD4;1	CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1	D-TYPE CYCLIN 4;1	Cyclin-D2-1, cyclinD2;1, Cyclin-D4-1, cyclinD4;1	D-TYPE CYCLIN 4;1		9	Q6YXH8. OsCYCD2;1 in Yang et al. 2010.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0466100	LOC_Os09g29100.1				GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0045840 - positive regulation of mitosis, GO:0051726 - regulation of cell cycle, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000112 - disease resistance	
12363	_	RD22, OsBURP03, OsBURP3	_	BURP domain-containing protein 3			1	Q942D4. a BURP domain-containing protein.	 Tolerance and resistance - Stress tolerance	Os01g0733500	LOC_Os01g53240.1						
12364	PLDeta2	OsPLDeta2	PHOSPHOLIPASE D eta 2		PHOSPHOLIPASE D eta 2		8	AP005388.	 Biochemical character						GO:0046466 - membrane lipid catabolic process, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding, GO:0004630 - phospholipase D activity, GO:0070290 - NAPE-specific phospholipase D activity, GO:0046470 - phosphatidylcholine metabolic process		
12365	ONI1	OsONI1, FDH, OsCUT4, CUT4, OsKCS7, KCS7	ONION 1	ONION1, CUTICULAR 4, cuticular wax production 4, CUT gene family 4, 3-Ketoacyl-CoA synthase 7	3-KETOACYL-COA SYNTHASE 7	oni1, oni1-1, oni1-2	3	ONI1 encodes a fatty acid elongase (beta-ketoacyl CoA synthase). FDH in Gao et al. 2021. GO:0080167:response to karrikin. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0181500	LOC_Os03g08360.4, LOC_Os03g08360.3, LOC_Os03g08360.1				GO:0009609 - response to symbiotic bacterium, GO:0009414 - response to water deprivation, GO:0009913 - epidermal cell differentiation, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0042335 - cuticle development, GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0000038 - very-long-chain fatty acid metabolic process, GO:0009416 - response to light stimulus, GO:0006633 - fatty acid biosynthetic process, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence 
12366	ONI2	OsONI2, OsCUT9, CUT9, OsKCS20, KCS20	ONION 2	ONION2, CUTICULAR 9, cuticular wax production 9, CUT gene family 9, 3-Ketoacyl-CoA synthase 20	3-KETOACYL-COA SYNTHASE 20	oni2, oni2-1, oni2-2, oni2-3, oni2-4, oni2-5	10	a fatty acid elongase. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0416200	LOC_Os10g28060.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0046686 - response to cadmium ion, GO:0006633 - fatty acid biosynthetic process, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016020 - membrane	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009049 - inflorescence 
12368	GN8.1	OsFBH1, OsbHLH112, DLN213, OsDLN213, Gn8.1, OsGn8.1	GRAIN NUMBER 8.1	FLOWERING BHLH 1, basic helix-loop-helix protein 112, DLN repressor 213, DLN motif protein 213, grain number 8.1			8	a rice homolog of Arabidopsis FBH. GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific. 	 Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os08g0506700	LOC_Os08g39630.1				GO:0005634 - nucleus, GO:0046983 - protein dimerization activity, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter	TO:0002616 - flowering time, TO:0002759 - grain number, TO:0006032 - panicle size	
12369	_	OsAAE3, AAE3, OsOCS, OCS, 4CL	_	Acyl-Activating Enzyme 3, adenosine monophosphate binding protein 3, acyl activation enzyme 3, oxalyl-CoA synthetase			4	the orthologous gene of maize Opaque7 (O7). AU076256, AU076257. the AtAAE3 homolog. GO:0097468: programmed cell death in response to reactive oxygen species. TO:0000869: glume anatomy and morphology trait. GO:1901141: regulation of lignin biosynthetic process. GO:1900150: regulation of defense response to fungus. 4CL (4-coumarate-CoA ligase) in Oshima et al. 2019. regulated by both osa-miR408-3p and novel50_mature.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Coloration - Anthocyanin	Os04g0683700	LOC_Os04g58710.1				GO:0042743 - hydrogen peroxide metabolic process, GO:0005829 - cytosol, GO:0009809 - lignin biosynthetic process, GO:0012501 - programmed cell death, GO:0033611 - oxalate catabolic process, GO:0042742 - defense response to bacterium, GO:0009506 - plasmodesma, GO:0009570 - chloroplast stroma, GO:0009718 - anthocyanin biosynthetic process, GO:0050832 - defense response to fungus, GO:0003824 - catalytic activity, GO:0009507 - chloroplast, GO:0050203 - oxalate-CoA ligase activity, GO:0046686 - response to cadmium ion, GO:0048046 - apoplast, GO:0010214 - seed coat development, GO:0009735 - response to cytokinin stimulus, GO:0005737 - cytoplasm, GO:0010044 - response to aluminum ion, GO:0010030 - positive regulation of seed germination, GO:0009910 - negative regulation of flower development, GO:0009908 - flower development	TO:0000622 - flower development trait, TO:0000731 - lignin content, TO:0000605 - hydrogen peroxide content, TO:0000432 - temperature response trait, TO:0000080 - micronutrient sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000420 - fertility related trait, TO:0000074 - blast disease	PO:0007615 - flower development stage , PO:0006016 - leaf epidermis 
12370	_	Cen8.t00793	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21700.		Os08g0308700	LOC_Os08g21700.1				GO:0048038 - quinone binding, GO:0005507 - copper ion binding, GO:0009507 - chloroplast, GO:0009308 - amine metabolic process		
12371	_	Cen8.t00802	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21720.			LOC_Os08g21720						
12372	_	Cen8.t00808	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g21760.		Os08g0309300	LOC_Os08g21760.1				GO:0016021 - integral to membrane, GO:0045185 - maintenance of protein location		
12373	MRPL15	Cen8.t00833, OsMRPL15	MITOCHONDRIAL RIBOSOMAL PROTEIN L15 	Mitochondrial Ribosomal Protein L15	MITOCHONDRIAL RIBOSOMAL PROTEIN L15 	Osmrpl15	8	a Cen8 (centromere of chromosome 8) Active Gene. GO:0061668: mitochondrial ribosome assembly. GO:2000904: regulation of starch metabolic process. GO:0062052: starch granule initiation.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0310100	LOC_Os08g21840.1				GO:0006412 - translation, GO:0009555 - pollen development, GO:0015934 - large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0005982 - starch metabolic process	TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
12374	_	Cen8.t00849	_				8	a Cen8 (centromere of chromosome 8) Active Gene.									
12375	_	Cen8.t00960	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22200.		Os08g0313600	LOC_Os08g22200.1						
12376	_	Cen8.t01003, OsPABPC2, PABPC2	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22354. a homolog of AtPABP8. SGs (stress granules) marker.		Os08g0314800	LOC_Os08g22354.1, LOC_Os08g22354.2				GO:0000166 - nucleotide binding, GO:0003723 - RNA binding		
12377	_	Cen8.t01009	_				8	a Cen8 (centromere of chromosome 8) Active Gene.									
12378	_	Cen8.t01152	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22852.		Os08g0318400	LOC_Os08g22852.1						
12379	_	Cen8.t01153	_				8	a Cen8 (centromere of chromosome 8) Active Gene. LOC_Os08g22864.		Os08g0318500	LOC_Os08g22864.1, LOC_Os08g22864.2				GO:0005886 - plasma membrane, GO:0000145 - exocyst, GO:0005829 - cytosol, GO:0009846 - pollen germination, GO:0006904 - vesicle docking during exocytosis, GO:0048354 - mucilage biosynthetic process during seed coat development, GO:0015031 - protein transport, GO:0009860 - pollen tube growth		
12380	KRP7	Orysa;KRP7	KIP-RELATED PROTEIN 7	KIP-related protein 7	KIP-RELATED PROTEIN 7		1	LOC_Os01g37740.	 Biochemical character		LOC_Os01g37740				GO:0016301 - kinase activity		
12381	_	OsTCP10, OsSTA77, TCP10, STA77	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 10			2	LOC_Os02g51310. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g51310				GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0005634 - nucleus		PO:0001016 - L mature pollen stage , PO:0009066 - anther 
12382	_	OsTCP17, TCP17	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 17			4	LOC_Os04g44440.	 Tolerance and resistance - Stress tolerance	Os04g0526000	LOC_Os04g44440.1				GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0007131 - seedling development stage , PO:0007041 - inflorescence emergence stage 
12383	TCP18	OsTCP18	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 18		TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 18		5		 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os05g0513100	LOC_Os05g43760.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0009629 - response to gravity, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0002693 - gravity response trait, TO:0000524 - submergence tolerance	PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage 
12384	TCP19	OsTCP19	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 19	"\"Teosinte branched1, Cycloidea, Proliferating cell factor (TCP)-domain protein 19\", TCP-domain protein 19"	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 19	OsTCP19-H, OsTCP19-L, OsTCP19-cr	6	GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle	Os06g0226700	LOC_Os06g12230.1				GO:0009738 - abscisic acid mediated signaling, GO:0032502 - developmental process, GO:0009737 - response to abscisic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0034389 - lipid particle organization, GO:0009651 - response to salt stress, GO:0006808 - regulation of nitrogen utilization, GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus, GO:0009751 - response to salicylic acid stimulus, GO:0060359 - response to ammonium ion, GO:0051302 - regulation of cell division, GO:0009753 - response to jasmonic acid stimulus, GO:0010167 - response to nitrate, GO:0006325 - chromatin organization	TO:0000040 - panicle length, TO:0000326 - leaf color, TO:0000206 - leaf angle, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000011 - nitrogen sensitivity, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000453 - panicle to tiller ratio	PO:0020148 - shoot apical meristem 
12385	_	OsTCP20, TCP20	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 20			7	LOC_Os07g04510.			LOC_Os07g04510				GO:0005634 - nucleus		
12386	TCP21	OsTCP21	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 21		TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 21		7	a putative OsmiR319 target gene. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os07g0152000	LOC_Os07g05720.1				GO:0005634 - nucleus, GO:0002213 - defense response to insect, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000424 - brown planthopper resistance	
12387	TIG1	OsTCP22, OsTCP15, TCP22, TCP15, OsTIG1	TILLER INCLINED GROWTH 1	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 22		tig1	8	OsTCP22 in Sharma et al. 2010.	 Vegetative organ - Culm	Os08g0432300	LOC_Os08g33530.1				GO:0005634 - nucleus, GO:0051512 - positive regulation of unidimensional cell growth	TO:0000567 - tiller angle	
12388	REP1	OsTCP24, REP1, TCP24, SDP1, SDP1/REP1, OsTb2, Tb2	RETARDED PALEA 1	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 24, RETARDED PALEA1, SMALL DEGENERATIVE PALEA 1, Teosinte branched 2		rep1, rep1-1, rep1-2, rep1-3(sdp1), OsTb23bp+, OsTb23bp-	9	EU702407. SDP1/REP1 is downstreamly regulated by DP1 (Yun Jin et al. 2011). a homologue of the maize Tb1 gene. SRA accession number PRJNA595072.	 Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm	Os09g0410500	LOC_Os09g24480.1				GO:0005634 - nucleus	TO:0000346 - tiller number, TO:0000329 - tillering ability	PO:0020141 - stem node 
12389	_	OsTCP25, TCP25	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 25			9	LOC_Os09g34950.	 Seed - Morphological traits - Endosperm	Os09g0521300	LOC_Os09g34950.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009089 - endosperm 
12390	_	OsTCP27, TCP27	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 27			12	LOC_Os12g02090.			LOC_Os12g02090				GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0005739 - mitochondrion		
12391	_	OsTCP28, TCP28	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 28			12	LOC_Os12g07480.		Os12g0173300	LOC_Os12g07480.1				GO:0005634 - nucleus		
12392	TCP5	OsTCP5	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5, TEOSINTE BRANCHED1/CYCLOIDEA/PCFs 5, TEOSINTE BRANCHED1/ CYCLOIDEA/PCF transcription factor 5, TCP transcription factor 5	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5		1	TO:0000794: axillary bud prominence. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Vegetative organ - Culm	Os01g0763200	LOC_Os01g55750.1, LOC_Os01g55750.2, LOC_Os01g55750.3				GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0005739 - mitochondrion, GO:0005634 - nucleus, GO:0005783 - endoplasmic reticulum, GO:0009755 - hormone-mediated signaling, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009736 - cytokinin mediated signaling, GO:0080006 - internode patterning, GO:0009739 - response to gibberellin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000544 - mesocotyl length	
12393	_	OsTCP6, TCP6	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 6			1		 Tolerance and resistance - Stress tolerance	Os01g0924400	LOC_Os01g69980.1				GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0005634 - nucleus	TO:0000276 - drought tolerance	
12394	TCP7	OsTCP7, CHE	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 7	TEOSINTE-BRANCHED1CYCLODOIDEA/PCF7	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 7		2	a rice ortholog of Arabidopsis gene for circadian clock component.	 Tolerance and resistance - Stress tolerance	Os02g0635800	LOC_Os02g42380.1				GO:0007623 - circadian rhythm, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0007584 - response to nutrient	TO:0000480 - nutrient sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
12395	TCP9	OsTCP9, OsTCP5, TCP5	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 9			2	OsTCP5 in Zheng et al. 2020.		Os02g0747400	LOC_Os02g51280.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
12396	_		_	Aurora-B			1	one M-phase-expressed gene.	 Biochemical character	Os01g0191800	LOC_Os01g09580.1, LOC_Os01g09580.2				GO:0005524 - ATP binding, GO:0005730 - nucleolus, GO:0043987 - histone H3-S10 phosphorylation, GO:0005819 - spindle, GO:0035175 - histone kinase activity (H3-S10 specific)		
12397	_		_	Histone H2A			5	one S-phase-expressed gene. Q75L11.	 Tolerance and resistance - Stress tolerance	Os05g0113900	LOC_Os05g02300.1				GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0003677 - DNA binding	TO:0000259 - heat tolerance	PO:0009066 - anther 
12398	EXPB17	OsEXPB17	BETA-EXPANSIN 17		BETA-EXPANSIN 17		4	Q7X6J9.	 Biochemical character	Os04g0530100	LOC_Os04g44780.2, LOC_Os04g44780.1				GO:0005576 - extracellular region, GO:0019953 - sexual reproduction, GO:0005618 - cell wall, GO:0016020 - membrane		
12399	_	FSM, FAS1	_	FLATENNED SHOOT MERISTEM, FASCIATA1, CAF-1 p150 subunit, p150 subunit of chromatin assembly factor-1		fsm, fsm-1, fsm-2, fsm-3	1	B2ZX90. a putative ortholog of Arabidopsis FASCIATA1 (FAS1).	 Vegetative organ - Root	Os01g0896300	LOC_Os01g67100.1				GO:0005634 - nucleus, GO:0016568 - chromatin modification, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007090 - regulation of S phase of mitotic cell cycle, GO:0010449 - root meristem growth, GO:0006351 - transcription, DNA-dependent, GO:0006310 - DNA recombination, GO:0010448 - vegetative meristem growth, GO:0006281 - DNA repair		
12400	GTE4	OsGTE4, OsBrd4b, Brd4b	GENERAL TRANSCRIPTION FACTOR GROUP E4	bromodomain-containing protein 4b	GENERAL TRANSCRIPTION FACTOR GROUP E4	gte4	2	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os02g0250300	LOC_Os02g15220.1, LOC_Os02g15220.2, LOC_Os02g15220.4				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	PO:0009066 - anther , PO:0009049 - inflorescence 
12401	_	MAP	_	MICROTUBULE-ASSOCIATED PROTEIN			8			Os08g0518100	LOC_Os08g40620.1, LOC_Os08g40620.2				GO:0005622 - intracellular, GO:0032851 - positive regulation of Rab GTPase activity, GO:0005097 - Rab GTPase activator activity		
12402	_	ZOS8-11	_				8	a C2H2 zinc finger protein.		Os08g0517300	LOC_Os08g40560.1, LOC_Os08g40560.2				GO:0008270 - zinc ion binding, GO:2000011 - regulation of adaxial/abaxial pattern formation, GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:0031053 - primary microRNA processing, GO:0048367 - shoot development, GO:0016607 - nuclear speck, GO:0005730 - nucleolus, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0048509 - regulation of meristem development		
12403	_	BTBN18, OsBTBN18, BTBN18	_	Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain 18, BTB domain with non-phototropic hypocotyl 3 domain 18, BTB-type E3 ubiquitin ligase N18			9			Os09g0266600	LOC_Os09g09370.1, LOC_Os09g09370.2, LOC_Os09g09370.3						
12404	TLP4	OsTLP13, TLP13, OsTLP4	TUBBY-LIKE PROTEIN 4	Tubby-like protein 4, tubby-like protein 13	TUBBY-LIKE PROTEIN 4		2	Q6ETL2. EU328285. OsTLP13 in Kou et al. 2009.	 Tolerance and resistance - Disease resistance	Os02g0179400	LOC_Os02g08310.1						
12405	SERL5	OsSERL5, OsBAK1-4, OsSERK1, BAK1-4, SERK1	SERK-LIKE GENE 5	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase, SERK-like gene 5, bri1-associated receptor kinase 1 (BAK1) homologue 4	SERK-LIKE PROTEIN 5		1	a rice ortholog of Arabidopsis NIK3. KC610902-KC610914 (O. sativa and wild rice species, partial cds). the candidate gene for qRLW1 (QTL for ratio of length-to-width).	 Biochemical character	Os01g0171000	LOC_Os01g07630.1				GO:0004672 - protein kinase activity		
12406	_	SAD2	_				4	an importin beta-domain protein.							GO:0006606 - protein import into nucleus		
12407	_	GIL1	_				10			Os10g0378400	LOC_Os10g23220.1, LOC_Os10g23220.2				GO:0005886 - plasma membrane		
12409	PHD1	OsPHD1, LM212-1	PHOTOASSIMILATE DEFECTIVE 1	photoassimilate defective1, photoassimilate defective 1, lesion mimic 212-1		phd1, phd1-1, phd1-2, phd1-3, lm212-1	1	PHD1 encodes a functional chloroplast-localized UDP-glucose epimerase (UGE). PO:0030123: panicle inflorescence. GO:0140426: PAMP-triggered immunity signalling pathway. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll	Os01g0367100	LOC_Os01g26920.1, LOC_Os01g26920.2				GO:0002238 - response to molecule of fungal origin, GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010941 - regulation of cell death, GO:0010200 - response to chitin	TO:0000325 - soluble protein content, TO:0002668 - jasmonic acid content, TO:0000175 - bacterial blight disease resistance, TO:0001018 - transpiration rate, TO:0001027 - net photosynthetic rate, TO:0000439 - fungal disease resistance, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000316 - photosynthetic ability, TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content	PO:0009047 - stem , PO:0020142 - stem internode , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root 
12410	UGE1	OsUGE1, OsUGE-1, UGE-1	UDP-GLUCOSE EPIMERASE 1	UDP-glucose epimerase 1, UDP-glucose 4-epimerase 1	UDP-GLUCOSE EPIMERASE 1		5	Q8LNZ3.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0595100	LOC_Os05g51670.3, LOC_Os05g51670.2, LOC_Os05g51670.1				GO:0009969 - xyloglucan biosynthetic process, GO:0006995 - cellular response to nitrogen starvation, GO:0006950 - response to stress, GO:0006012 - galactose metabolic process, GO:0005829 - cytosol, GO:0010053 - root epidermal cell differentiation, GO:0042546 - cell wall biogenesis, GO:0050662 - coenzyme binding, GO:0005795 - Golgi stack, GO:0003978 - UDP-glucose 4-epimerase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
12411	FC24	OsUGE2, UGE2, OsFC24, BZ1, OsBZ1, OsBP1, BP1	FRAGILE CULM 24	UDP-glucose epimerase 2, fragile culm 24, brittle stem and zebra leaf 1, BRITTLE PLANT1	UDP-GLUCOSE EPIMERASE 2	Osfc24, bz1, bp1	8	Q6ZDJ7. TO:0000993: cellulose content. GO:0052574: UDP-galactose biosynthetic process. TO:0000748: leaf morphology trait. PO:0030123: panicle inflorescence. TO:0000993: cellulose content. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0020089: iron content trait. GO:2000280: regulation of root development. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Vegetative organ - Root	Os08g0374800	LOC_Os08g28730.1				GO:0006826 - iron ion transport, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0005783 - endoplasmic reticulum, GO:0060586 - multicellular organismal iron ion homeostasis, GO:0003978 - UDP-glucose 4-epimerase activity, GO:0005795 - Golgi stack, GO:0005829 - cytosol, GO:0009664 - plant-type cell wall organization, GO:0010215 - cellulose microfibril organization, GO:0009658 - chloroplast organization, GO:0010405 - arabinogalactan protein metabolic process, GO:0050662 - coenzyme binding, GO:0042546 - cell wall biogenesis, GO:0010053 - root epidermal cell differentiation, GO:0009969 - xyloglucan biosynthetic process, GO:0006950 - response to stress, GO:0006012 - galactose metabolic process, GO:0010106 - cellular response to iron ion starvation, GO:0042594 - response to starvation, GO:0042542 - response to hydrogen peroxide, GO:0051512 - positive regulation of unidimensional cell growth, GO:0048364 - root development	TO:0000357 - growth and development trait, TO:0000227 - root length, TO:0000316 - photosynthetic ability, TO:0000040 - panicle length, TO:0000495 - chlorophyll content, TO:0000084 - root number, TO:0000656 - root development trait, TO:0000224 - iron sensitivity, TO:0000447 - filled grain number, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000731 - lignin content, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0000019 - seedling height, TO:0006032 - panicle size, TO:0000346 - tiller number, TO:0000590 - grain weight, TO:0000578 - root fresh weight, TO:0000457 - total biomass yield, TO:0000051 - stem strength, TO:0000200 - brittle culm, TO:0000333 - sugar content, TO:0006006 - monosaccharide content, TO:0000300 - glucose content, TO:0000396 - grain yield, TO:0000571 - shoot fresh weight, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	PO:0009047 - stem , PO:0007073 - 2 formation of axillary shoot stage , PO:0007520 - root development stage , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0007131 - seedling development stage , PO:0025034 - leaf , PO:0009005 - root 
12412	UGE3	OsUGE3, OsUGE4	UDP-GLUCOSE EPIMERASE 3	UDP-glucose epimerase 3	UDP-GLUCOSE EPIMERASE 3		9	Q652A8. OsUGE4 in Zhang et al. 2020.	 Biochemical character	Os09g0526700	LOC_Os09g35800.1				GO:0003978 - UDP-glucose 4-epimerase activity, GO:0009555 - pollen development, GO:0046369 - galactose biosynthetic process, GO:0005886 - plasma membrane, GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding, GO:0006950 - response to stress, GO:0005829 - cytosol		
12413	UGE4	OsUGE4, OsUGE3	UDP-GLUCOSE EPIMERASE 4	UDP-glucose epimerase 4	UDP-GLUCOSE EPIMERASE 4		9	Q6K2E1. OsUGE3 in Zhang et al. 2020.	 Biochemical character	Os09g0323000	LOC_Os09g15420.1				GO:0005829 - cytosol, GO:0010053 - root epidermal cell differentiation, GO:0042546 - cell wall biogenesis, GO:0009969 - xyloglucan biosynthetic process, GO:0006012 - galactose metabolic process, GO:0005795 - Golgi stack, GO:0050662 - coenzyme binding, GO:0003978 - UDP-glucose 4-epimerase activity, GO:0006950 - response to stress		
12414	Hb3	HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3	HEMOGLOBIN 3	non-symbiotic hemoglobin 3, Phytogb1.3, phytoglobin 1.3	HEMOGLOBIN 3		3	AF335504. Q94FT8.	 Biochemical character	Os03g0234000	LOC_Os03g13150.1				GO:0005618 - cell wall, GO:0019825 - oxygen binding, GO:0005506 - iron ion binding, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0015671 - oxygen transport, GO:0020037 - heme binding		
12415	Hb4	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4	HEMOGLOBIN 4	non-symbiotic hemoglobin 4, Phytogb1.4, phytoglobin 1.4	HEMOGLOBIN 4		3	AF335504. Q94FT7.	 Biochemical character	Os03g0234100	LOC_Os03g13160.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0019825 - oxygen binding, GO:0015671 - oxygen transport, GO:0005886 - plasma membrane, GO:0005618 - cell wall		
12416	Hb5	OsHB5, HB5, OsPgb1.5, Pgb1.5	HEMOGLOBIN 5	non-symbiotic hemoglobin 5, Phytogb1.5, phytoglobin 1.5	HEMOGLOBIN 5		5	EF061459.	 Biochemical character	Os05g0517600	LOC_Os05g44140.1				GO:0020037 - heme binding, GO:0015671 - oxygen transport, GO:0019825 - oxygen binding, GO:0005618 - cell wall, GO:0005506 - iron ion binding, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion		
12418	2ODD15	FLS, OsFLS, 2-ODD15, Os2-ODD15, Os2ODD15, OsFLS1, FLS1	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 15	flavonol synthase, 2-oxoglutarate-dependent dioxygenase 15	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 15		2	GO:0080167response to karrikin. OsFLS1 in Wang et al. 2022.	 Tolerance and resistance - Insect resistance,  Coloration - Others,  Biochemical character	Os02g0767300	LOC_Os02g52840.1				GO:0051555 - flavonol biosynthetic process, GO:0045431 - flavonol synthase activity, GO:0002213 - defense response to insect, GO:0009416 - response to light stimulus, GO:0009812 - flavonoid metabolic process	TO:0000205 - white-backed planthopper resistance	PO:0009066 - anther 
12419	CYP76M14	OsCYP76M14, OsCYP76-1, CYP76-1	P-450 76M14	Cytochrome P450 76M14	CYTOCHROME P450 76M14		1	OsCYP76-1 in Zhou et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0561600	LOC_Os01g38110.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0002238 - response to molecule of fungal origin, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000114 - flooding related trait, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root 
12420	CYP76M1	OsCYP76M1, OsCYP76-9, CYP76-9, OsCYP71T8, CYP71T8	P-450 76M1	Cytochrome P450 76M1	CYTOCHROME P450 76M1		8	BGIOSGA028809. OsCYP76-9 in Zhou et al. 2023. OsCYP71T8 in Sahoo et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0465700 	LOC_Os08g36310.1				GO:0009055 - electron carrier activity, GO:0009651 - response to salt stress, GO:0004497 - monooxygenase activity, GO:0009414 - response to water deprivation, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009413 - response to flooding, GO:0009409 - response to cold	TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root 
12421	CYP76C2	CYP76C2	P-450 76C2	Cytochrome P450 76C2	CYTOCHROME P450 76C2												
12422	CYP76M9	CYP76M9, OsCYP76-7, CYP76-7, OsCYP71T7, CYP71T7	P-450 76M9	Cytochrome P450 76M9	CYTOCHROME P450 76M9		6	BGIOSGA021189. OsCYP76-7 in Zhou et al. 2023. OsCYP71T7 in Sahoo et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0501900	LOC_Os06g30640.1				GO:0020037 - heme binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0009413 - response to flooding, GO:0004497 - monooxygenase activity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000114 - flooding related trait, TO:0000276 - drought tolerance	
12423	CYP76M10	OsCYP76M10, OsCYP76-10, CYP76-10, OsCYP71T9, CYP71T9	P-450 76M10	Cytochrome P450 76M10	CYTOCHROME P450 76M10		8	AF488521. BGIOSGA026711. OsCYP76-10 in Zhou et al. 2023. OsCYP71T9 in Sahoo et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0507100	LOC_Os08g39660.1				GO:0009414 - response to water deprivation, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0004497 - monooxygenase activity	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000114 - flooding related trait, TO:0006001 - salt tolerance	PO:0009005 - root 
12424	CYP76M13	CYP76M13	P-450 76M13	Cytochrome P450 76M13	CYTOCHROME P450 76M13		12		 Biochemical character	Os12g0199800	LOC_Os12g09790.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
12425	CYP76M4P	CYP76M4p	P-450 76M4P	Cytochrome P450 76M4p, Cytochrome P450 76M4 pseudogene	CYTOCHROME P450 76M4P		8										
12426	CYP76M11P	CYP76M11p	P-450 76M11P	Cytochrome P450 76M11p, Cytochrome P450 76M11 pseudogene	CYTOCHROME P450 76M11P		8										
12427	CYP76L1	OsCYP76L1, OsCYP76-12, CYP76-12, OsCYP71E4, CYP71E4	P-450 76L1	Cytochrome P450 76L1	CYTOCHROME P450 76L1		9	BGIOSGA029664. OsCYP76-12 in Zhou et al. 2023. OsCYP71E4 in Sahoo et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0447300 	LOC_Os09g27500.1				GO:0020037 - heme binding, GO:0009409 - response to cold, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009055 - electron carrier activity, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000114 - flooding related trait	
12428	CYP71W1	OsCYP71W1, OsCYP71W2, CYP71W2	P-450 71W1	Cytochrome P450 71W1	CYTOCHROME P450 71W1		3	BGIOSGA013057. OsCYP71W2 in Sahoo et al. 2023.	 Biochemical character	Os03g0593600 	LOC_Os03g39650.1				GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity		
12429	CYP71B13	CYP71B13	P-450 71B13	Cytochrome P450 71B13	CYTOCHROME P450 71B13												
12430	CYP76M2	OsCYP76M2, OsCYP76-11, CYP76-11	P-450 76M2	Cytochrome P450 76M2	CYTOCHROME P450 76M2		8	OsCYP76-11 in Zhou et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0508000	LOC_Os08g39730.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0002238 - response to molecule of fungal origin, GO:0009055 - electron carrier activity	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0007633 - endosperm development stage 
12431	_	rpL32_8.1	_	Ribosomal protein L32			8	60S ribosomal protein L32 (rpL32) gene on chromosome 8. D15957.	 Other	Os08g0524600	LOC_Os08g41300.1				GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome		
12432	_	rpL32_9.1	_				9	60S ribosomal protein L32 (rpL32) gene on chromosome 9.	 Other	Os09g0501200	LOC_Os09g32500.1, LOC_Os09g32500.2				GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus		
12433	_	rpL32_9.2	_				9	60S ribosomal protein L32 (rpL32) gene on chromosome 9.	 Other	Os09g0501700	LOC_Os09g32520.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus		
12434	_	rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32	_	ribosomal protein L32			9	LOC_Os09g32532.1 60S ribosomal protein L32 (rpL32) gene on chromosome 9. RPL32 in Moin et al. 2016. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os09g0502000	LOC_Os09g32532.1, LOC_Os09g32532.2				GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0003735 - structural constituent of ribosome, GO:0042542 - response to hydrogen peroxide, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009046 - flower , PO:0009005 - root 
12435	CABE	CabE, OsCabE, OsLhcb7, Lhcb7	PSII TYPE L CAB E	PSII type l Cab E, light-harvesting chlorophyll a/b-binding protein b7	PSII TYPE L CAB E		9	Light reaction group L1 chlorophyll a/b binding protein. AtLhcb7 ortholog.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0296800	LOC_Os09g12540.1				GO:0010269 - response to selenium ion, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0009765 - photosynthesis, light harvesting, GO:0009637 - response to blue light, GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0010218 - response to far red light	TO:0000032 - selenium sensitivity, TO:0000074 - blast disease	
12436	_	PsbP	_	Oxygen-evolving complex protein PsbP			1	Light reaction group L1.		Os01g0805300	LOC_Os01g59090.1				GO:0009543 - chloroplast thylakoid lumen, GO:0019898 - extrinsic to membrane, GO:0015979 - photosynthesis, GO:0009654 - oxygen evolving complex, GO:0009570 - chloroplast stroma, GO:0005509 - calcium ion binding		
12437	_	PsbP	_	Oxygen-evolving complex protein PsbP			3	Light reaction group L1.		Os03g0279950	LOC_Os03g17174.1, LOC_Os03g17174.2				GO:0009535 - chloroplast thylakoid membrane, GO:0019898 - extrinsic to membrane, GO:0005509 - calcium ion binding, GO:0009543 - chloroplast thylakoid lumen, GO:0009654 - oxygen evolving complex, GO:0015979 - photosynthesis		
12438	_	PsbP	_	Oxygen-evolving complex protein PsbP			12	Light reaction group L1.		Os12g0564400	LOC_Os12g37710.1, LOC_Os12g37710.2				GO:0009543 - chloroplast thylakoid lumen, GO:0005509 - calcium ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0019898 - extrinsic to membrane, GO:0015979 - photosynthesis, GO:0009654 - oxygen evolving complex		
12439	_		_	PSII subunit H			4	Light reaction group L1. LOC_Os04g16848. Os04g0238700 (in Ncbi and UniProt). 			LOC_Os04g16848				GO:0050821 - protein stabilization, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0042301 - phosphate binding, GO:0009523 - photosystem II		
12440	_		_	NAD(P)H-quinone oxidoreductase chain 2			7	Light reaction group L2.		Os07g0467900	LOC_Os07g28470.1, LOC_Os07g28470.2				GO:0042773 - ATP synthesis coupled electron transport, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
12441	_		_	NAD(P)H-quinone oxidoreductase chain 3			4	Light reaction group L2.		Os04g0309100	LOC_Os04g24410.1, LOC_Os04g24410.2				GO:0022900 - electron transport chain, GO:0070469 - respiratory chain, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0031966 - mitochondrial membrane, GO:0009507 - chloroplast		
12442	_		_	Cytochrome b6f subunit 7			3	Light reaction group L3.		Os03g0765900	LOC_Os03g55720.1, LOC_Os03g55720.2				GO:0009512 - cytochrome b6f complex, GO:0009535 - chloroplast thylakoid membrane		
12443	_		_	Ferredoxin			7	Light reaction group L5.		Os07g0489800	LOC_Os07g30670.1, LOC_Os07g30670.2, LOC_Os07g30670.3				GO:0009055 - electron carrier activity, GO:0051536 - iron-sulfur cluster binding, GO:0046872 - metal ion binding, GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone), GO:0009773 - photosynthetic electron transport in photosystem I, GO:0009535 - chloroplast thylakoid membrane		
12444	_		_	Ferredoxin I			4	Light reaction group L5.		Os04g0412200	LOC_Os04g33630.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0022900 - electron transport chain		
12445	_		_	Ferredoxin I			5	Light reaction group L5.		Os05g0555300	LOC_Os05g48160.1, LOC_Os05g48160.2, LOC_Os05g48160.3				GO:0046872 - metal ion binding, GO:0009055 - electron carrier activity, GO:0051536 - iron-sulfur cluster binding		
12447	_	FNR, PetH, OsFNR	_	Ferredoxin-NADP+ reductase			3	Light reaction group L5. P41345. D38445. D17410. PetH in Song et al. 2014.	 Biochemical character	Os03g0784700	LOC_Os03g57120.2, LOC_Os03g57120.1				GO:0050661 - NADP or NADPH binding, GO:0015979 - photosynthesis, GO:0004324 - ferredoxin-NADP+ reductase activity, GO:0022900 - electron transport chain, GO:0042651 - thylakoid membrane, GO:0009507 - chloroplast, GO:0005507 - copper ion binding, GO:0050660 - FAD binding		
12448	PSAN	psaN, OspsaN, PN, OsPN	_	PSI subunit N, Photosystem I reaction center subunit n, PSI reaction center subunit n, photosystem I subunit PsaN			12	Light reaction group L6. 		Os12g0189400	LOC_Os12g08770.1				GO:0009522 - photosystem I, GO:0030093 - chloroplast photosystem I, GO:0015979 - photosynthesis, GO:0042651 - thylakoid membrane		
12449	_		_	ATP synthase g-chain, ATP synthase gamma chain, F-type ATPase gamma			7	Light reaction group L7. 	 Biochemical character	Os07g0513000	LOC_Os07g32880.1				GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0009535 - chloroplast thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0015986 - ATP synthesis coupled proton transport, GO:0046961 - proton-transporting ATPase activity, rotational mechanism		
12450	_		_	Rubisco activase			4	Dark reaction group D1. 		Os04g0658300	LOC_Os04g56320.1				GO:0009535 - chloroplast thylakoid membrane, GO:0005524 - ATP binding		
12451	_		_	Rubisco subunit-binding protein			3	Dark reaction group D1. 		Os03g0293900	LOC_Os03g18270.1				GO:0005524 - ATP binding, GO:0044267 - cellular protein metabolic process		
12452	TCD9	OsCPn60alpha3, OsCPn60a3	_	Rubisco subunit-binding protein, chaperonin 60 alpha subunit 3, thermo-sensitive chloroplast development 9		tcd9	9	Dark reaction group D1. LOC_Os09g38980. a single recessive nuclear gene.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0563300	LOC_Os09g38980.1, LOC_Os09g38980.2				GO:0009658 - chloroplast organization, GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0044267 - cellular protein metabolic process, GO:0005524 - ATP binding	TO:0000432 - temperature response trait, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait	
12453	_	OsEno5, Eno5	_	Glyceraldehyde 3-phosphate dehydrogenase, enolase 5			6	Dark reaction group D2. 		Os06g0136600	LOC_Os06g04510.1, LOC_Os06g04510.2				GO:0006096 - glycolysis, GO:0004634 - phosphopyruvate hydratase activity, GO:0000015 - phosphopyruvate hydratase complex, GO:0000287 - magnesium ion binding		PO:0025034 - leaf , PO:0020104 - leaf sheath 
12454	PKPBETA2	OsPKpb2, PKpb2, OsPKpbeta2, PKpbeta2, OsPK9, PK9	PYRUVATE KINASE P BETA 2	Pyruvate kinase isozyme G, Pyruvate kinase p beta 2, Pyruvate kinase 9	PYRUVATE KINASE P BETA 2		10	Dark reaction group D2. PO:0030123: panicle inflorescence.		Os10g0571200 	LOC_Os10g42100.1				GO:0004743 - pyruvate kinase activity, GO:0000287 - magnesium ion binding, GO:0006096 - glycolysis, GO:0030955 - potassium ion binding, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed , PO:0009005 - root , PO:0001170 - seed development stage , PO:0009049 - inflorescence 
12455	_		_	Triose phosphate isomerase			9	Dark reaction group D3. 		Os09g0535000 	LOC_Os09g36450.1, LOC_Os09g36450.2				GO:0006096 - glycolysis, GO:0004807 - triose-phosphate isomerase activity, GO:0009579 - thylakoid, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0009941 - chloroplast envelope, GO:0048046 - apoplast, GO:0006642 - triglyceride mobilization, GO:0080022 - primary root development, GO:0032504 - multicellular organism reproduction, GO:0019563 - glycerol catabolic process, GO:0046166 - glyceraldehyde-3-phosphate biosynthetic process, GO:0009658 - chloroplast organization		
12456	YGDL1	OsAld-Y, Ald-Y, YGDL-1	YELLOW GREEN AND DROOPY LEAF-1	"\"Fru-1, 6-bisphosphatase\", \"fructose-1, 6-bisphosphate aldolase Y\", yellow green and droopy leaf-1, YELLOW GREEN AND DROOPY LEAF 1, \"fructose-bisphosphate aldolase, cytoplasmic isozyme 1\""	FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE  Y	ygdl-1	6	Dark reaction group D3. LOC_Os06g40640. GO:0090391: geranium assembly. 	 Coloration - Anthocyanin,  Coloration - Chlorophyll,  Biochemical character	Os06g0608700 	LOC_Os06g40640.4, LOC_Os06g40640.3, LOC_Os06g40640.2, LOC_Os06g40640.1				GO:0005777 - peroxisome, GO:0001666 - response to hypoxia, GO:0009813 - flavonoid biosynthetic process, GO:0004332 - fructose-bisphosphate aldolase activity, GO:0006096 - glycolysis, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0009225 - nucleotide-sugar metabolic process, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait, TO:0000295 - chlorophyll-b content, TO:0000289 - carotene content, TO:0000298 - chlorophyll ratio, TO:0000293 - chlorophyll-a content, TO:0001015 - photosynthetic rate	
12457	_		_	Fru-1, 6-bisphosphatase			6	Dark reaction group D3. 		Os06g0664200 	LOC_Os06g45370.1				GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0009507 - chloroplast, GO:0005975 - carbohydrate metabolic process		
12458	_		_	Phospho 2-dehydro 3-deoxyheptonate aldolase 2			10	Dark reaction group D3. 		Os10g0564400 	LOC_Os10g41480.1				GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009423 - chorismate biosynthetic process		
12460	_	OsTK, TK	_	Transketolase			6	Dark reaction group D3.	 Biochemical character	Os06g0133800  	LOC_Os06g04270.1				GO:0004802 - transketolase activity, GO:0009570 - chloroplast stroma, GO:0046686 - response to cadmium ion, GO:0009941 - chloroplast envelope, GO:0009651 - response to salt stress		
12461	_		_	Rib-5-P isomerase			3	Dark reaction group D3.		Os03g0781400  	LOC_Os03g56869.1				GO:0004751 - ribose-5-phosphate isomerase activity, GO:0009052 - pentose-phosphate shunt, non-oxidative branch, GO:0009507 - chloroplast		
12462	YGL6 	CSP41b, LGL1	YELLOW-GREEN LEAF 6	NAD-dependent epimerase/dehydratase, chloroplast stem-loop-binding protein of 41 kDa b, light-green leaves 1, yellow-green leaf 6	CHLOROPLAST STEM-LOOP-BINDING PROTEIN OF 41 KDA B	lgl1, ygl6	12	LOC_Os12g23180. Dark reaction group D3. GO:1903866: palisade mesophyll development.	 Coloration - Chlorophyll,  Coloration - Others,  Vegetative organ - Leaf	Os12g0420200 	LOC_Os12g23180.1				GO:0005773 - vacuole, GO:0048046 - apoplast, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0007623 - circadian rhythm, GO:0009941 - chloroplast envelope, GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0010287 - plastoglobule, GO:0005777 - peroxisome, GO:0005840 - ribosome, GO:0006364 - rRNA processing, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization, GO:0010319 - stromule	TO:0000298 - chlorophyll ratio, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0002655 - starch grain size	
12463	_		_	pyruvate/phosphoenolpyruvate kinase			9	Dark reaction group D3. HpcH/HpaI aldolase family protein.	 Biochemical character	Os09g0529900 	LOC_Os09g36030.1				GO:0016830 - carbon-carbon lyase activity, GO:0009507 - chloroplast, GO:0006725 - cellular aromatic compound metabolic process, GO:0005739 - mitochondrion, GO:0002237 - response to molecule of bacterial origin, GO:0005737 - cytoplasm, GO:0016832 - aldehyde-lyase activity, GO:0005975 - carbohydrate metabolic process		
12464	_		_	Triose phosphate/phosphate translocator			8	Dark reaction group D4. Q84QU8.		Os08g0344600 	LOC_Os08g25624.1, LOC_Os08g25624.2, LOC_Os08g25624.3, LOC_Os08g25624.4				GO:0015714 - phosphoenolpyruvate transport, GO:0005739 - mitochondrion, GO:0008643 - carbohydrate transport, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane, GO:0015121 - phosphoenolpyruvate transmembrane transporter activity, GO:0009670 - triose-phosphate transmembrane transporter activity		
12465	PPGM	OspPGM, pPGM	PLASTIDIC PHOSPHOGLUCOMUTASE	Phosphoglucomutase, Plastidic phosphoglucomutase, plastidic PGM	PLASTIDIC PHOSPHOGLUCOMUTASE	osppgm, osppgm-1, osppgm-2, CR-osppgm-1, CR-osppgm-2	10	Dark reaction group D4. GO:0070998: sensory perception of gravity.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Vegetative organ - Culm	Os10g0189100 	LOC_Os10g11140.1, LOC_Os10g11140.2				GO:0005992 - trehalose biosynthetic process, GO:0004614 - phosphoglucomutase activity, GO:0005829 - cytosol, GO:0000287 - magnesium ion binding, GO:0010319 - stromule, GO:0019252 - starch biosynthetic process, GO:0009570 - chloroplast stroma, GO:0009630 - gravitropism, GO:0009409 - response to cold, GO:0019388 - galactose catabolic process, GO:0048046 - apoplast, GO:0009629 - response to gravity, GO:0010581 - regulation of starch biosynthetic process, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0009590 - detection of gravity, GO:0009941 - chloroplast envelope	TO:0002693 - gravity response trait, TO:0000696 - starch content, TO:0000106 - male sterility type, TO:0000567 - tiller angle	
12466	FKII	OsFKII, OsFK1, FK1, FRK-2, OsFRK-2, FRK2, OsFRK2	FRUCTOKINASE II	Fructokinase, fructokinase II, Fructokinase 1, Fructokinase-2	FRUCTOKINASE II		8	Dark reaction group D4. Q0J8G4. AF429947. A2YQL4. BGIOSGA027875. OsFK1 in Guglielminetti et al. 2006 and Guglielminetti et al. 2014.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Biochemical character	Os08g0113100 	LOC_Os08g02120.1				GO:0046688 - response to copper ion, GO:0006000 - fructose metabolic process, GO:0005829 - cytosol, GO:0019252 - starch biosynthetic process, GO:0005524 - ATP binding, GO:0008865 - fructokinase activity	TO:0000021 - copper sensitivity	
12467	CIN5	OsCIN4, OsCIN5, CIN4, CWIN4, OsCWIN4	CELL WALL INVERTASE 5	b-Fructofuranosidase, cell-wall invertase 4, cell-wall invertase 5	CELL WALL INVERTASE 5		1	Dark reaction group D4. AY578161. Q5JJV0. GO:0071836: nectar secretion. GO:0080167: response to karrikin. AY575552. OsCIN4 in Cho et al. 2005. CWIN4 in Wang et al. 2021.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0966700 	LOC_Os01g73580.1				GO:0051670 - inulinase activity, GO:0005618 - cell wall, GO:0004575 - sucrose alpha-glucosidase activity, GO:0009611 - response to wounding, GO:0031219 - levanase activity, GO:0048046 - apoplast, GO:0005982 - starch metabolic process, GO:0005773 - vacuole	TO:0000074 - blast disease	
12468	_		_	Gln synthetase			6	Dark reaction group D5.		Os06g0699700 	LOC_Os06g48620.1				GO:0009396 - folic acid and derivative biosynthetic process		
12469	ATASE3	Atase3, OsATASE3	AMIDO PHOSPHORIBOSYLTRANSFERASE 3	Gln synthetase, amido phosphoribosyltransferase 3	AMIDO PHOSPHORIBOSYLTRANSFERASE 3		5	Dark reaction group D5.	 Biochemical character	Os05g0430800 	LOC_Os05g35580.1				GO:0009965 - leaf morphogenesis, GO:0009116 - nucleoside metabolic process, GO:0009113 - purine base biosynthetic process, GO:0006189 - 'de novo' IMP biosynthetic process, GO:0046872 - metal ion binding, GO:0004044 - amidophosphoribosyltransferase activity, GO:0009507 - chloroplast, GO:0051536 - iron-sulfur cluster binding, GO:0005618 - cell wall, GO:0009532 - plastid stroma		
12470	_		_	Ferredoxin-dependent Glu synthase			7	Dark reaction group D5.		Os07g0676200 							
12471	PSAA	PsaA	PHOTOSYSTEM I SUBUNIT	PSI subunit PsaA, photosystem I subunit PsaA			1	LOC_Os01g57964. Os01g0790950 (in Ncbi and UniProt). 			LOC_Os01g57964				GO:0015979 - photosynthesis, GO:0009522 - photosystem I, GO:0016021 - integral to membrane, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait	
12472	GLO1	GLO1, OsGLO1	GLYCOLATE OXIDASE 1	Glycolate oxidase 1			3	Q10CE4. CB683246. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity.	 Biochemical character	Os03g0786100	LOC_Os03g57220.1, LOC_Os03g57220.2				GO:0022626 - cytosolic ribosome, GO:0019048 - virus-host interaction, GO:0016020 - membrane, GO:0010181 - FMN binding, GO:0048046 - apoplast, GO:0005773 - vacuole, GO:0005777 - peroxisome, GO:0009853 - photorespiration, GO:0009570 - chloroplast stroma, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0008891 - glycolate oxidase activity, GO:0005634 - nucleus, GO:0010109 - regulation of photosynthesis		
12473	GLO2	GLO2, OsGLO2	GLYCOLATE OXIDASE 2	Glycolate oxidase 2			4	Q7XPR4. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity. 	 Biochemical character	Os04g0623600	LOC_Os04g53214.1, LOC_Os04g53214.2				GO:0016020 - membrane, GO:0019048 - virus-host interaction, GO:0048046 - apoplast, GO:0005634 - nucleus, GO:0005773 - vacuole, GO:0005777 - peroxisome, GO:0008891 - glycolate oxidase activity, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0010109 - regulation of photosynthesis, GO:0010181 - FMN binding, GO:0022626 - cytosolic ribosome		
12474	GLO3	GLO3, OsGLO3	GLYCOLATE OXIDASE 3	Glycolate oxidase 3			4	Q7FAS1. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity.	 Biochemical character	Os04g0623500	LOC_Os04g53210.1, LOC_Os04g53210.3				GO:0009570 - chloroplast stroma, GO:0019048 - virus-host interaction, GO:0005777 - peroxisome, GO:0022626 - cytosolic ribosome, GO:0016020 - membrane, GO:0005773 - vacuole, GO:0010181 - FMN binding, GO:0005634 - nucleus, GO:0010109 - regulation of photosynthesis, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0008891 - glycolate oxidase activity, GO:0009853 - photorespiration, GO:0048046 - apoplast		
12475	GLO5	GLO4, OsGLO4, OsGLO5	GLYCOLATE OXIDASE 5	Glycolate oxidase 4, Glycolate oxidase 5	GLYCOLATE OXIDASE 5		7	Q6YT73. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity. GLO4 in Zhang et al. 2012 and 2016, Lu et al. 2014.	 Biochemical character	Os07g0152900	LOC_Os07g05820.1, LOC_Os07g05820.2				GO:0009854 - oxidative photosynthetic carbon pathway, GO:0016020 - membrane, GO:0010109 - regulation of photosynthesis, GO:0046487 - glyoxylate metabolic process, GO:0010181 - FMN binding, GO:0010118 - stomatal movement, GO:0048046 - apoplast, GO:0005773 - vacuole, GO:0022626 - cytosolic ribosome, GO:0005777 - peroxisome, GO:0008891 - glycolate oxidase activity, GO:0009570 - chloroplast stroma, GO:0009853 - photorespiration, GO:0019048 - virus-host interaction, GO:0005634 - nucleus	TO:0000522 - stomatal conductance, TO:0001015 - photosynthetic rate	
12476	GLO4	GLO5, OsGLO5, OsGLO4	GLYCOLATE OXIDASE 4	Glycolate oxidase 5, Glycolate oxidase 4	GLYCOLATE OXIDASE 4		7	Q8H3I4. CB967248. GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity. GO: 0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity. GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity. GLO5 in Zhang et al. 2012.	 Biochemical character	Os07g0616500	LOC_Os07g42440.1, LOC_Os07g42440.2, LOC_Os07g42440.3, LOC_Os07g42440.4				GO:0009853 - photorespiration, GO:0010181 - FMN binding, GO:0010109 - regulation of photosynthesis, GO:0009854 - oxidative photosynthetic carbon pathway, GO:0008891 - glycolate oxidase activity, GO:0005777 - peroxisome, GO:0019048 - virus-host interaction		
12477	GLO6	GLO6, OsGLO6, OsGOX6, GOX6	GLYCOLATE OXIDASE 6	Glycolate oxidase 6			8		 Biochemical character	Os08g0198700	LOC_Os08g09860.1				GO:0016491 - oxidoreductase activity, GO:0055114 - oxidation reduction	TO:0000605 - hydrogen peroxide content	
12478	PPI-PFK	OsPPi-PFK, OsPFK04, PFK04, PFK4	PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCTO-1-KINASE	Pyrophosphate-dependent phosphofructo-1-kinase, phosphofructokinase 4	PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCTO-1-KINASE		5	group A phosphofructokinase (PKF_A).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0194900	LOC_Os05g10650.1				GO:0009651 - response to salt stress, GO:0034059 - response to anoxia, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005829 - cytosol, GO:0006096 - glycolysis, GO:0003872 - 6-phosphofructokinase activity, GO:0005737 - cytoplasm, GO:0005945 - 6-phosphofructokinase complex, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000482 - chemical stress sensitivity	
12479	_	OsLASPO	_	L-aspartate oxidase			2		 Biochemical character	Os02g0134400	LOC_Os02g04170.1, LOC_Os02g04170.2, LOC_Os02g04170.3				GO:0009435 - NAD biosynthetic process, GO:0009507 - chloroplast, GO:0008734 - L-aspartate oxidase activity		
12480	ARM1	OsMYB-1, MYB-1, MYB1, OsARM1, Os2R_MYB56, 2R_MYB56, OsMYBxoc1, MYBxoc1	ARSENITE-RESPONSIVE MYB TRANSCRIPTION FACTOR 1	Myb-like DNA-binding domain containing protein 1, ARSENITE-RESPONSIVE MYB1, R2R3-MYB Transcription Factor 56	ARSENITE-RESPONSIVE MYB TRANSCRIPTION FACTOR 1	osarm1	5	TO:0006054: arsenic content trait. TO:0020089: iron content trait. TO:0020091: manganese content. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1900426: positive regulation of defense response to bacterium.	 Coloration - Anthocyanin,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os05g0442400	LOC_Os05g37060.1				GO:0034756 - regulation of iron ion transport, GO:0009658 - chloroplast organization, GO:0003682 - chromatin binding, GO:0046686 - response to cadmium ion, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0003677 - DNA binding, GO:0042742 - defense response to bacterium, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0046685 - response to arsenic, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0009414 - response to water deprivation, GO:0002679 - respiratory burst during defense response, GO:0010109 - regulation of photosynthesis	TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000276 - drought tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000316 - photosynthetic ability, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content	PO:0025034 - leaf , PO:0009047 - stem 
12481	_	OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62, OsMAPKKK62, MAPKKK62, MEK7, OsMEK7	_	NPK1-related protein kinase, MAPK kinase kinase 62, MAPK/ERK kinase 7		mkkk62-1, mkkk62-2, mkkk62-3, osmkkk62	1	BF889458, BF889460, BF889470. GO1902039: negative regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy,  Character as QTL - Grain quality,  Seed - Physiological traits - Longevity,  Tolerance and resistance - Stress tolerance	Os01g0699600	LOC_Os01g50420.1				GO:0009409 - response to cold, GO:0048653 - anther development, GO:2000033 - regulation of seed dormancy, GO:0009270 - response to humidity, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009609 - response to symbiotic bacterium	TO:0000345 - seed viability, TO:0000303 - cold tolerance, TO:0000250 - vigor related trait, TO:0000615 - abscisic acid sensitivity, TO:0000455 - seed set percent, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000253 - seed dormancy, TO:0000421 - pollen fertility, TO:0000435 - seed longevity, TO:0010001 - percent germination, TO:0000441 - humidity related trait, TO:0002675 - gibberellic acid content	PO:0009066 - anther , PO:0001004 - anther development stage , PO:0009005 - root , PO:0009047 - stem 
12482	_	OsGH	_	glycosyl hydrolase			8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0518800	LOC_Os08g40680.1				GO:0003824 - catalytic activity, GO:0005975 - carbohydrate metabolic process		
12483	DIAT	OsAT-IV, OsDIAT	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 	aminotransferase, class IV family protein	DROUGHT-INDUCED BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 	osdiat	5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0244700	LOC_Os05g15530.1				GO:0009081 - branched chain family amino acid metabolic process, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0003824 - catalytic activity	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0002673 - amino acid content	
12484	_	OsPRAGL	_	phosphoribosylamine-glycine ligase			12	LOC_Os12g09540.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0197100	LOC_Os12g09540.1, LOC_Os12g09540.2				GO:0004637 - phosphoribosylamine-glycine ligase activity, GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0009113 - purine base biosynthetic process, GO:0006164 - purine nucleotide biosynthetic process, GO:0046872 - metal ion binding		
12485	_	OsRNAG	_	Receptor mediating netrin-dependent axon guidance homolog			1		 Tolerance and resistance - Stress tolerance	Os01g0386500	LOC_Os01g28970.2						
12486	_	OsLRR	_	NBS-LRR disease resistance protein			11	LOC_Os11g12000.	 Tolerance and resistance - Stress tolerance	Os11g0227200 	LOC_Os11g12000.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
12487	CYP94C2B	OsCYP94C2b	CYTOCHROME P450 94C2B	Cytochrome P450 94C2b	CYTOCHROME P450 94C2B		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0150200	LOC_Os12g05440.1				GO:0020037 - heme binding, GO:0009651 - response to salt stress, GO:0005506 - iron ion binding, GO:0018685 - alkane 1-monooxygenase activity, GO:0009055 - electron carrier activity	TO:0006001 - salt tolerance	
12488	POX22.3	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9	PEROXIDASE 22.3	Peroxidase22.3, Peroxidase 22.3, Peroxidase-22.3, Pathogen-induced Peroxidase, class III peroxidase 111, Peroxidase 2, Pathogenesis related gene 9	PEROXIDASE 22.3		7	AF014467. X66125. BN000640. cell wall-bound peroxidase (CW-PRX). Peroxidase 2 in Sudo et al. 2008.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os07g0677200	LOC_Os07g48020.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009739 - response to gibberellin stimulus, GO:0002213 - defense response to insect, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0010332 - response to gamma radiation, GO:0050832 - defense response to fungus, GO:0046688 - response to copper ion, GO:0009414 - response to water deprivation, GO:0000172 - ribonuclease MRP complex, GO:0009753 - response to jasmonic acid stimulus	TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000205 - white-backed planthopper resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
12489	POX8.1	POX8.1, prx110, POX8	PEROXIDASE 8.1	Peroxidase8.1, Peroxidase 8.1, Peroxidase-8.1, class III peroxidase 110	PEROXIDASE 8.1		7	AF014468. BN000639. cell wall-bound peroxidase (CW-PRX). GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os07g0677100	LOC_Os07g48010.1				GO:0002213 - defense response to insect, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress	TO:0000424 - brown planthopper resistance	
12490	POX5.1	POX5.1, prx113, POX5	PEROXIDASE 5.1	Peroxidase5.1, Peroxidase 5.1, Peroxidase-5.1, class III peroxidase 113	PEROXIDASE 5.1		7	AF014469. BN000642. cell wall-bound peroxidase (CW-PRX).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0677400	LOC_Os07g48040.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
12491	POXGX9	POXgX9, OsPOXgX9, prx112, OsPrx112	PEROXIDASE GX9	PeroxidasegX9, Peroxidase gX9, Peroxidase-gX9, class III peroxidase 112	PEROXIDASE GX9		7	AF014470. A2YPX3, Q0D3N0. BN000641. cell wall-bound peroxidase (CW-PRX). D16442. OsPrx112 in Suzuki et al. 2022.	 Biochemical character	Os07g0677300	LOC_Os07g48030.1				GO:0004601 - peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process, GO:0046872 - metal ion binding, GO:0005576 - extracellular region, GO:0020037 - heme binding		
12492	POX3006	POX3006, prx114, Osprx114, PO-C1, POC-1, POC1, OsPOC1, Prx14, OsPrx14, POD3006, OsPOD3006	PEROXIDASE 3006	Peroxidase3006, Peroxidase 3006, Peroxidase-3006, class III peroxidase 114	PEROXIDASE 3006		7	AF014471. BN000643. cell wall-bound peroxidase (CW-PRX). AF247700 (peroxidase POC1). LOC4344281(Os07g0677400/Os07g0677500). Prx14 in Salvador-Guirao et al. 2019.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0677500	LOC_Os07g48050.1				GO:0006952 - defense response, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0004601 - peroxidase activity	TO:0000112 - disease resistance	
12493	_	OsOPT8	_	Oligopeptide transporter 8			2			Os02g0695800	LOC_Os02g46850.1						
12494	_	OsOPT6	_	Oligopeptide transporter 6			4			Os04g0594800	LOC_Os04g50820.1				GO:0055085 - transmembrane transport		
12495	_	OsOPT2	_	Oligopeptide transporter 2			6			Os06g0125400	LOC_Os06g03540.1				GO:0006857 - oligopeptide transport, GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane		
12496	_	OsOPT3, OsGT1	_	Oligopeptide transporter 3, glutathione transporter 1		osopt3, osgt1	6	AF393848, D25093, AU082160.	 Tolerance and resistance - Stress tolerance	Os06g0125500 	LOC_Os06g03560.1				GO:0006857 - oligopeptide transport, GO:0005886 - plasma membrane, GO:0055085 - transmembrane transport		
12497	_	OsOPT4	_	Oligopeptide transporter 4			6			Os06g0127700	LOC_Os06g03700.1				GO:0055085 - transmembrane transport, GO:0005886 - plasma membrane, GO:0006857 - oligopeptide transport		
12498	_	OsOPT5	_	Oligopeptide transporter 5			8			Os08g0320200	LOC_Os08g23130.2, LOC_Os08g23130.3				GO:0006857 - oligopeptide transport, GO:0055085 - transmembrane transport		
12499	_	OsOPT9	_	Oligopeptide transporter 9		osopt9	8		 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0492000	LOC_Os08g38400.1				GO:0006857 - oligopeptide transport, GO:0055085 - transmembrane transport		
12500	ADF1	OsADF1	ACTIN DEPOLYMERIZING FACTOR 1	actin depolymerizing factor 1	ACTIN DEPOLYMERIZING FACTOR 1		2	Q6EUH7.	 Tolerance and resistance - Stress tolerance	Os02g0663800	LOC_Os02g44470.1				GO:0030042 - actin filament depolymerization, GO:0015629 - actin cytoskeleton		
12501	ADF2	OsADF	ACTIN DEPOLYMERIZING FACTOR 2	actin depolymerizing factor 2	ACTIN DEPOLYMERIZING FACTOR 2	OsADF2/6alpha	3	Q9AY76. AC084320. GO:0090332: stomatal closure.	 Tolerance and resistance - Stress tolerance	Os03g0780400	LOC_Os03g56790.1				GO:0015629 - actin cytoskeleton, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0003779 - actin binding, GO:0030042 - actin filament depolymerization	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
12502	ADF3	OsADF3	ACTIN DEPOLYMERIZING FACTOR 3	actin depolymerizing factor 3	ACTIN DEPOLYMERIZING FACTOR 3		3	Q84TB6. AC104433.	 Tolerance and resistance - Stress tolerance	Os03g0820500	LOC_Os03g60580.1				GO:0030042 - actin filament depolymerization, GO:0009409 - response to cold, GO:0015629 - actin cytoskeleton, GO:0006950 - response to stress	TO:0000303 - cold tolerance	
12503	ADF4	OsADF4, OsADF	ACTIN DEPOLYMERIZING FACTOR 4	actin depolymerizing factor 4	ACTIN DEPOLYMERIZING FACTOR 4	adf	3	Q84TB3. LOC_Os03g60590 (obsolete in RGAP Release 7 data).	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os03g0820600					GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect, GO:0030042 - actin filament depolymerization, GO:0015629 - actin cytoskeleton, GO:0009845 - seed germination	TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance, TO:0000430 - germination rate, TO:0000175 - bacterial blight disease resistance	PO:0007057 - 0 seed germination stage 
12504	ADF5	OsADF5	ACTIN DEPOLYMERIZING FACTOR 5	actin depolymerizing factor 5	ACTIN DEPOLYMERIZING FACTOR 5		3	Q10P87.	 Tolerance and resistance - Stress tolerance	Os03g0243100	LOC_Os03g13950.4, LOC_Os03g13950.3, LOC_Os03g13950.2, LOC_Os03g13950.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12505	ADF6	OsADF6	ACTIN DEPOLYMERIZING FACTOR 6	actin depolymerizing factor 6	ACTIN DEPOLYMERIZING FACTOR 6		4	Q7XSN9.	 Tolerance and resistance - Stress tolerance	Os04g0555700	LOC_Os04g46910.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12506	ADF7	OsADF7	ACTIN DEPOLYMERIZING FACTOR 7	actin depolymerizing factor 7	ACTIN DEPOLYMERIZING FACTOR 7		5	Q0DLA3.		Os05g0113400	LOC_Os05g02250.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12507	ADF8	OsADF8, OsADF8a, OsADF8b	ACTIN DEPOLYMERIZING FACTOR 8	actin depolymerizing factor 8	ACTIN DEPOLYMERIZING FACTOR 8		7	AP004760, AP006344. Q0D744.		Os07g0297500	LOC_Os07g20170.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12508	ADF9	OsADF9	ACTIN DEPOLYMERIZING FACTOR 9	actin depolymerizing factor 9	ACTIN DEPOLYMERIZING FACTOR 9		7	Q8H2P8.	 Tolerance and resistance - Stress tolerance	Os07g0484200	LOC_Os07g30090.2				GO:0030042 - actin filament depolymerization, GO:0015629 - actin cytoskeleton		
12509	ADF10	OsADF10	ACTIN DEPOLYMERIZING FACTOR 10	actin depolymerizing factor 10	ACTIN DEPOLYMERIZING FACTOR 10		10	Q337A5.	 Tolerance and resistance - Stress tolerance	Os10g0521100	LOC_Os10g37670.1				GO:0030042 - actin filament depolymerization, GO:0015629 - actin cytoskeleton		
12510	ADF11	OsADF11	ACTIN DEPOLYMERIZING FACTOR 11	actin depolymerizing factor 11	ACTIN DEPOLYMERIZING FACTOR 11		12	Q2QLT8.	 Tolerance and resistance - Stress tolerance	Os12g0628100	LOC_Os12g43340.1				GO:0015629 - actin cytoskeleton, GO:0030042 - actin filament depolymerization		
12511	KOB1	OsKOB1, OsAKR3, AKR3	_	K+ channel beta 1 subunit, K+ Channel beta Subunit, voltage-dependent potassium channel beta 1 subunit, Group 3 Aldo-Keto Reductase			2	U46758. Q40648. target gene of miR5075. one of eight members of Group 3 Aldo-Keto Reductase. PO:0030123: panicle inflorescence. GO:1904383: response to sodium phosphate.	 Seed - Physiological traits,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0817500	LOC_Os02g57240.1				GO:0046685 - response to arsenic, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0005244 - voltage-gated ion channel activity, GO:0042594 - response to starvation, GO:0006813 - potassium ion transport	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000430 - germination rate, TO:0000074 - blast disease, TO:0000276 - drought tolerance	PO:0009030 - carpel , PO:0009049 - inflorescence 
12512	_	OsGEX2, GEX2	_	Gamete Expressed 2			9	The OsGEX2 gene is homologous to Arabidopsis GEX2. The rice OsGEX2 and PS1 gene promoter sequences contain all the elements needed for controlling transgene expression in the sperm and vegetative cells of rice pollen. JN593328 (promoter sequence).		Os09g0424800/Os09g0424701	LOC_Os09g25650.1						
12513	_	PS1	_	Pollen Specific 1			4	PS1 shares homology with maize pollen-specific gene Zm-13. JN593329 (promoter sequence). The rice OsGEX2 and PS1 gene promoter sequences contain all the elements needed for controlling transgene expression in the sperm and vegetative cells of rice pollen.		Os04g0398700	LOC_Os04g32680.1				GO:0005615 - extracellular space		
12514	_	Bph20(t), BPH20	_	BROWN PLANTHOPPER RESISTANCE 20			6	The locus bph20(t) was fine mapped to the short arm of chromosome 6 about 2.7 cM to the upper marker RM435 and 2.5 cM to lower marker RM540 and in a 2.5 cM region flanked by two new SSR markers BYL7 and BYL8.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
12515	_	Bph21(t), BPH21	_	BROWN PLANTHOPPER RESISTANCE 21			10	The BPH resistance locus bph21(t) was initially mapped to a region 7.9 cM to upper marker RM222 and 4.0 cM to lower marker RM244 on the short arm of chromosome 10.	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
12516	_	OsCHB701, CHB701	_	SWIRM domain-containing protein CHB701			12		 Tolerance and resistance - Stress tolerance	Os12g0176700	LOC_Os12g07730.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0003682 - chromatin binding, GO:0005634 - nucleus	TO:0006001 - salt tolerance	
12517	_	OsCHB702, CHB702, DLN49, OsDLN49	_	SWIRM domain-containing protein CHB702, DLN repressor 49, DLN motif protein 49			2			Os02g0194000	LOC_Os02g10060.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
12518	CHB703	OsCHB703, OsSWI3A, SWI3A	SWIRM DOMAIN-CONTAINING PROTEIN CHB703	SWIRM domain-containing protein CHB703	SWIRM DOMAIN-CONTAINING PROTEIN CHB703		4	a putative SWI3 subunit. a putative rice SWI/SNF CRC component.		Os04g0480300	LOC_Os04g40420.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
12519	_	OsCHB704, CHB704	_	SWIRM domain-containing protein CHB704			4			Os04g0110300	LOC_Os04g01970.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
12520	_	OsCHB706, CHB706	_	SWIRM domain-containing protein CHB706			3			Os03g0722100	LOC_Os03g51220.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus		
12521	_	OsHDMA701, HDMA701, OsPAO9, PAO9	_	SWIRM domain-containing protein HDMA701, histone lysine-specific demethylase 701, polyamine oxidase 9			4	Q7XUR2. LOC_Os04g47270.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0560300	LOC_Os04g47270.1				GO:0009911 - positive regulation of flower development, GO:0010228 - vegetative to reproductive phase transition, GO:0016491 - oxidoreductase activity, GO:0016575 - histone deacetylation, GO:0051568 - histone H3-K4 methylation, GO:0009536 - plastid, GO:0003677 - DNA binding		
12522	_	OsHDMA702, HDMA702, OsPAO8, PAO8	_	SWIRM domain-containing protein HDMA702, histone lysine-specific demethylase 702, polyamine oxidase 8			2	Q6Z690. LOC_Os02g51880.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0755200	LOC_Os02g51880.1				GO:0005634 - nucleus, GO:0016568 - chromatin modification, GO:0003677 - DNA binding, GO:0016491 - oxidoreductase activity		
12523	_	OsHDMA703, HDMA703, OsPAO10, PAO10	_	SWIRM domain-containing protein HDMA703, histone lysine-specific demethylase 703, polyamide oxidase 10			8	Q6YYZ1. LOC_Os08g04780.	 Biochemical character	Os08g0143400	LOC_Os08g04780.1				GO:0016568 - chromatin modification, GO:0016491 - oxidoreductase activity, GO:0003677 - DNA binding, GO:0005739 - mitochondrion		
12524	_	OsHDMA704, HDMA704, OsPAO11, PAO11	_	SWIRM domain-containing protein HDMA704, histone lysine-specific demethylase 704, polyamine oxidase 11			10	.	 Biochemical character	Os10g0532100/Os10g0532150	LOC_Os10g38850.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0016491 - oxidoreductase activity		
12525	_	OsHXA701, HXA701, ADA2	_	SWIRM domain-containing protein HXA701			3	LOC_Os03g53960. Q75LL6. rice homolog of Arabidopsis ADA2 (AtADA2a and AtADA2b).	 Vegetative organ - Root	Os03g0750800	LOC_Os03g53960.1, LOC_Os03g53960.2				GO:0010015 - root morphogenesis, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0051302 - regulation of cell division, GO:0048364 - root development, GO:0006351 - transcription, DNA-dependent	TO:0000207 - plant height, TO:0000656 - root development trait	PO:0006085 - root meristem 
12526	_		_	mitochondrial-processing peptidase subunit alpha			1	One of the candidate genes in the Rf3 locus.	 Biochemical character	Os01g0191500	LOC_Os01g09560.1				GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0008152 - metabolic process, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0003824 - catalytic activity, GO:0005741 - mitochondrial outer membrane, GO:0005750 - mitochondrial respiratory chain complex III, GO:0005758 - mitochondrial intermembrane space, GO:0005759 - mitochondrial matrix		
12527	_	SF21	_	pollen-specific protein SF21			1	One of the candidate genes in the Rf3 locus.		Os01g0192600	LOC_Os01g09670.1						
12529	_	PPR762	_	pentatricopeptide repeat protein 762			10	AB110443. One of the candidate genes in the Rf4 locus.									
12530	S35	S35(t)	HYBRID STERILITY 35	Hybrid sterility35, Hybrid sterility 35, Hybrid sterility-35		S35(t)-gj, S35(t)-gi	12	The locus qSS-12 controlling hybrid sterility was located in a 5.8 cM interval between markers RM19 and RM6296, and  it was designated as S35(t).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	
12531	_	OsPCBP	_	pollen-specific calmodulin-binding protein			11	AY323950.		Os11g0689300	LOC_Os11g46230.1, LOC_Os11g46230.2						
12532	IAGLU	OsIAGLU, OsIAAGLU, IAAGLU, OsIAGT1, IAGT1, UGT74A2, OsUGT74A2	IAA-GLUCOSE SYNTHASE	IAA-glucose synthase, indole-3-acetic acid glucosyltransferase, IAA-glycosyltransferase, UDP-glucosyltransferase 74A2	IAA-GLUCOSE SYNTHASE	iaaglu, iaaglu-c2, iaaglu-c9	3	AC120508. Overexpression of the OsIAGLU gene in riceresults in increased tiller numbers and shorter plant height.TO:0020106: Indole-3-acetic acid content. 	 Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - panicle,  Biochemical character	Os03g0693600 	LOC_Os03g48740.1				GO:0080026 - response to indolebutyric acid stimulus, GO:0010601 - positive regulation of auxin biosynthetic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0008194 - UDP-glycosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0005829 - cytosol, GO:0010252 - auxin homeostasis, GO:0009733 - response to auxin stimulus, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0009958 - positive gravitropism	TO:0000040 - panicle length, TO:0000227 - root length, TO:0000163 - auxin sensitivity, TO:0000346 - tiller number, TO:0002672 - auxin content, TO:0000206 - leaf angle, TO:0000207 - plant height	PO:0025034 - leaf 
12533	RBBI3-1	RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4	BOWMAN-BIRK INHIBITOR 3-1	Bowman-Birk type bran trypsin inhibitor 4, AvrPiz-t Interacting Protein 4	BOWMAN-BIRK INHIBITOR 3-1	apip4	1	AJ277468. OsBBTI4 in Lim et al. 2013. RBBTI4 in Yoo et al. 2018 .	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0124200	LOC_Os01g03340.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0050832 - defense response to fungus, GO:0046688 - response to copper ion, GO:0005576 - extracellular region, GO:0010106 - cellular response to iron ion starvation, GO:0045087 - innate immune response	TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0000224 - iron sensitivity	
12534	RBBI3-2	OsRBBI3-2, BBTI3, OsBBTI3	BOWMAN-BIRK INHIBITOR 3-2	Proteinase inhibitor I12	BOWMAN-BIRK INHIBITOR 3-2		1	AJ277468.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0124100	LOC_Os01g03330.1				GO:0009414 - response to water deprivation, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009269 - response to desiccation, GO:0005576 - extracellular region	TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance	
12535	RBBI3-3	RBBI3-3, OsBBPI, BBPI, IBP1.2, OsIBP1.2, OsBBTI5, BBTI5	BOWMAN-BIRK INHIBITOR 3-3	Bowman-Birk protease inhibitor, Bowman-Birk proteinase inhibitor, Bowman-Birk trypsin inhibitor	BOWMAN-BIRK INHIBITOR 3-3		1	AJ277469. A2WK50, Q0JR25. U76004. Bowman-Birk proteinase inhibitor. OsBBPI in Ye et al. 2013. PR6 family protein. GO:1901001: negative regulation of response to salt stress. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os01g0124401	LOC_Os01g03360.1				GO:0046688 - response to copper ion, GO:0005576 - extracellular region, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009642 - response to light intensity, GO:0010106 - cellular response to iron ion starvation, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0002213 - defense response to insect, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0080027 - response to herbivore	TO:0000615 - abscisic acid sensitivity, TO:0000021 - copper sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000516 - relative root length, TO:0000261 - insect damage resistance, TO:0000605 - hydrogen peroxide content, TO:0000205 - white-backed planthopper resistance, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0001034 - relative plant height, TO:0000227 - root length, TO:0000166 - gibberellic acid sensitivity, TO:0000403 - leaf-folder resistance, TO:0000031 - silicon sensitivity, TO:0000075 - light sensitivity, TO:0000224 - iron sensitivity, TO:0000172 - jasmonic acid sensitivity	
12536	RBBI2-1	RBBI2-1, OsBBTI2, BBTI2	BOWMAN-BIRK INHIBITOR 2-1	Bowman-Birk protease inhibitor 2-1	BOWMAN-BIRK INHIBITOR 2-1		1	AJ277468. proteinase inhibitor.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0124000	LOC_Os01g03320.1				GO:0009753 - response to jasmonic acid stimulus, GO:0006979 - response to oxidative stress, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0005576 - extracellular region, GO:0050832 - defense response to fungus	TO:0000168 - abiotic stress trait, TO:0000179 - biotic stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
12537	RBBI2-2	RBBI2-2	BOWMAN-BIRK INHIBITOR 2-2		BOWMAN-BIRK INHIBITOR 2-2		1	AJ277468. LOC_Os01g03310.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0123900	LOC_Os01g03310.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
12538	RBBI2-3	RBBI2-3	BOWMAN-BIRK INHIBITOR 2-3		BOWMAN-BIRK INHIBITOR 2-3		1	AJ277470.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0124650	LOC_Os01g03390.1				GO:0005576 - extracellular region, GO:0004867 - serine-type endopeptidase inhibitor activity		
12539	RBBI2-4	OsRBBI2-4	BOWMAN-BIRK INHIBITOR 2-4		BOWMAN-BIRK INHIBITOR 2-4		1	AJ277472.	 Biochemical character	Os01g0124600	LOC_Os01g03380.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region		
12540	RBBI2-0	RBBI2-0	BOWMAN-BIRK INHIBITOR 2-0		BOWMAN-BIRK INHIBITOR 2-0		1										
12541	_	Oswip1-1	_				1	The singledomain RBBI gene Oswip1-1 was similar to Wip1, a woundinducible BBI gene found in maize (Zea mays), wheat (Triticum aestivum), barley, and sorghum.									
12542	_	Oswip1-2	_				1	The singledomain RBBI gene Oswip1-2 was similar to Wip1, a woundinducible BBI gene found in maize (Zea mays), wheat (Triticum aestivum), barley, and sorghum.									
12543	PRX135	Pox, prx135, OsPRX1, OsPRX4	CLASS III PEROXIDASE 135	Peroxidase, class III peroxidase 135	CLASS III PEROXIDASE 135		12	BN000664. OsPRX1 in Ke et al. 2019. OsPRX4 in Zhou et al. 2022.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0112000	LOC_Os12g02080.2, LOC_Os12g02080.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0005618 - cell wall, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0048046 - apoplast		
12544	GNS4	OsPR2, PR2, Gns4, OsGns4, OsGLN2	BETA-1,3-GLUCANASE 4	beta-1, 3-glucanase, beta-1, 3-glucanase 4, endo-1, 3-beta-glucanase, Pathogenesis related gene 2	BETA-1,3-GLUCANASE 4		1	U72250. AF443600.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0944700	LOC_Os01g71670.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0009617 - response to bacterium, GO:0048046 - apoplast, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009817 - defense response to fungus, incompatible interaction	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
12545	_	OsPR2, PR2, OsGlu1, Glu1	_	beta-1, 3-glucanase, pathogenesis-related protein 2			1		 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0940700	LOC_Os01g71340.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0009617 - response to bacterium, GO:0009738 - abscisic acid mediated signaling, GO:0009609 - response to symbiotic bacterium, GO:0005975 - carbohydrate metabolic process	TO:0000175 - bacterial blight disease resistance, TO:0000112 - disease resistance	
12546	_	TLP, PR5, OsTLP, OsPR5	_	Thaumatin-like protein			3	U77656.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0663500 	LOC_Os03g46070.1				GO:0009817 - defense response to fungus, incompatible interaction, GO:0009651 - response to salt stress		
12547	PAL	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8	PHENYLALANINE AMMONIA-LYASE	phenylalanine ammonia-lyase, phenylalanine ammonia-lyase 2	PHENYLALANINE AMMONIA-LYASE		2	XM466845. PAL2 in Koshiba et al. 2013, Sathe et al. 2019. Z15085. OsPAL2 in Tonnessen et al. 2014, Wang et al. 2017, Zhou et al. 2018, Xu et al. 2018, Kachewar et al. 2019, He et al. 2020, Singh et al. 2021, Yang et al. 2022, Wang et al. 2022, Liu et al. 2022, Ning et al. 2023. OsPAL8 in Yang et al. 2016.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Leaf,  Coloration - Anthocyanin	Os02g0626400	LOC_Os02g41650.2, LOC_Os02g41650.1, LOC_Os02g41650.3				GO:0006559 - L-phenylalanine catabolic process, GO:0009800 - cinnamic acid biosynthetic process, GO:0009809 - lignin biosynthetic process, GO:0005737 - cytoplasm, GO:0009807 - lignan biosynthetic process, GO:0009718 - anthocyanin biosynthetic process, GO:0002215 - defense response to nematode, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0009751 - response to salicylic acid stimulus, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0009411 - response to UV, GO:0009635 - response to herbicide	TO:0000731 - lignin content, TO:0000074 - blast disease, TO:0000733 - lignin biosynthesis trait, TO:0000424 - brown planthopper resistance, TO:0000384 - nematode damage resistance, TO:0000326 - leaf color, TO:0000255 - sheath blight disease resistance, TO:0000058 - herbicide sensitivity, TO:0000160 - UV light sensitivity	
12548	SCI1	Sci1, PR6, OsSci1, OsPR6, MGBP1, OsMGBP1	SUBTILISIN/CHYMOTRYPSIN INHIBITOR 1	pathogenesis-related 6, Subtilisin/chymotrypsin inhibitor 1, MG1-BINDING PROTEIN 1	SUBTILISIN/CHYMOTRYPSIN INHIBITOR 1	mgbp1	12	AY878693. 	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0437800	LOC_Os12g25090.2, LOC_Os12g25090.1				GO:0010466 - negative regulation of peptidase activity, GO:0002215 - defense response to nematode, GO:0009611 - response to wounding, GO:0004867 - serine-type endopeptidase inhibitor activity	TO:0000384 - nematode damage resistance	
12549	_	OsCLP3, OsClp3, CLP3	_	ATP-dependent Clp protease proteolytic subunit 3, Clp protease 3			2	LOC_Os02g42290. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0634500	LOC_Os02g42290.1, LOC_Os02g42290.2, LOC_Os02g42290.3				GO:0050897 - cobalt ion binding, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0008270 - zinc ion binding, GO:0005759 - mitochondrial matrix, GO:0009535 - chloroplast thylakoid membrane		
12550	TSP	OsSGS3, SGS3, OsSGS3a, SGS3a, OsTSP	THERMOSENSITIVE ABNORMAL PALEA	suppressor of gene silencing 3, SUPPRESSOR OF GENE SILENCING 3a, thermosensitive abnormal palea	SUPPRESSOR OF GENE SILENCING 3	tsp, ossgs3a, ossgs3a-1	12	Q2QWE9. a rice homolog of Arabidopsis thaliana suppressor of gene silencing 3 (AtSGS3). PO:0030123: panicle inflorescence. GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0197500	LOC_Os12g09580.1				GO:0070921 - regulation of production of siRNA involved in chromatin silencing by small RNA, GO:0031047 - gene silencing by RNA, GO:0010494 - stress granule, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0050688 - regulation of defense response to virus	TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000474 - glume opening, TO:0000153 - relative yield, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0002730 - grain shape, TO:0000357 - growth and development trait	PO:0009010 - seed , PO:0009049 - inflorescence 
12551	_	OsPR1, OsPR1a, PR1a, PR1, OsPR1b, PR1b	_	PATHOGEN RESPONSE GENE 1, PATHOGENESIS-RELATED 1a			7	AF306651. AP006172. BGIOSGA025089 (indica). OsPR1b in Li et al. 2024.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os07g0129300	LOC_Os07g03730.1				GO:0002213 - defense response to insect, GO:0009607 - response to biotic stimulus, GO:0002215 - defense response to nematode, GO:0005576 - extracellular region	TO:0000384 - nematode damage resistance, TO:0000424 - brown planthopper resistance	
12552	PIOX	OsPIOX, RalphaO, alpha-DOX, OsDOX, DOX, alpha-DOX2, Osalpha-DOX2	PATHOGEN-INDUCIBLE OXYGENASE	Pathogen-inducible oxygenase, fatty acid alpha-oxygenase, alpha-oxygenase, Rice alpha-oxygenase, rice fatty acid alpha-(di)oxygenase, alpha-Dioxygenase	PATHOGEN-INDUCIBLE OXYGENASE		12	AAF64042. GO:0098542: defense response to other organism. alpha-DOX2 in Ahmad et al. 2022.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0448900	LOC_Os12g26290.4, LOC_Os12g26290.6, LOC_Os12g26290.5, LOC_Os12g26290.1, LOC_Os12g26290.2, LOC_Os12g26290.3				GO:0004601 - peroxidase activity, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0001561 - fatty acid alpha-oxidation, GO:0020037 - heme binding, GO:0008219 - cell death, GO:0009751 - response to salicylic acid stimulus, GO:0010150 - leaf senescence, GO:0016165 - lipoxygenase activity, GO:0001676 - long-chain fatty acid metabolic process	TO:0000112 - disease resistance, TO:0000276 - drought tolerance	
12553	ASP1	OsAsp1	ASPARTIC PROTEASE 1	aspartic protease 1	ASPARTIC PROTEASE 1	asp1-1, asp1-2	11	AY043216, AY043217. Q0IU52, A2ZC67. TO:0000929: fruit growth and development trait. TO:0020111: ovary development trait.  TO:0020106: Indole-3-acetic acid content. GO:0035670: plant-type ovary development.	 Biochemical character,  Seed - Morphological traits - Embryo	Os11g0184800	LOC_Os11g08200.1				GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis, GO:0010601 - positive regulation of auxin biosynthetic process, GO:0010154 - fruit development, GO:0010252 - auxin homeostasis, GO:0009505 - plant-type cell wall, GO:0009733 - response to auxin stimulus	TO:0002672 - auxin content, TO:0000163 - auxin sensitivity	PO:0001002 - fruit development stage 
12554	_	OsRAL6	_				7	a candidate gene controlling gelatinization temperature.	 Seed - Physiological traits - Storage substances						GO:0004190 - aspartic-type endopeptidase activity, GO:0009505 - plant-type cell wall, GO:0006508 - proteolysis		
12555	MIR156C	miR156c, OsmiR156c, osmiR156c, osa-miR156c, osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p	MICRORNA156C	micro RNA 156c, microRNA156c, osa-miRNA156c			1	miRBase accession: MI0000655. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. OsmiR156b and OsmiR156c are mapped to the same transcription unit (accession no. AK110797). EU004233-EU004275 (Japonica, Indica and O. rufipogon)LM383044 LM379143	 Other,  Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0010050 - vegetative phase change, GO:0035195 - gene silencing by miRNA, GO:0032350 - regulation of hormone metabolic process, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus	TO:0000476 - growth hormone content, TO:0000357 - growth and development trait, TO:0000074 - blast disease	
12556	MIR156D	miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d	MICRORNA156D	micro RNA 156d, microRNA156d, osa-miRNA156d			2	miRBase accession: MI0000656. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family.LM379144	 Reproductive organ - Panicle, Mode of branching,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA	TO:0000050 - inflorescence branching, TO:0000074 - blast disease, TO:0000329 - tillering ability, TO:0000456 - spikelet number, TO:0006032 - panicle size	PO:0009006 - shoot system 
12557	MIR156E	miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e	MICRORNA156E	micro RNA 156e, microRNA156e, osa-miRNA156e			4	miRBase accession: MI0000657. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. GO: 1901600: strigolactone metabolic process.LM379145	 Other,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity						GO:0010050 - vegetative phase change, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000576 - stem length, TO:0000329 - tillering ability, TO:0000357 - growth and development trait, TO:0002637 - leaf size	
12558	MIR156F	miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p	MICRORNA156F	micro RNA 156f, microRNA156f, osa-miRNA156f			8	miRBase accession: MI0000658. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. OsmiR156f may specifically regulate OsSPL3, OsSPL12, and OsSPL14 in the young culms (Liu et al. 2015). LM383045 LM379146.  TO:0000847: panicle inflorescence morphology trait. TO:0000970: panicle density.	 Other,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Reproductive organ - Panicle, Mode of branching						GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex	TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000152 - panicle number	
12559	MIR156G	miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p	MICRORNA156G	micro RNA 156g, microRNA156g, osa-miRNA156g			9	miRBase accession: MI0000659. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. AY551210.LM383046 LM379147	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000429 - salt sensitivity	
12560	MIR156I	miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i	MICRORNA156I	micro RNA 156i, microRNA156i, osa-miRNA156i			2	miRBASE accession: MI0000661. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family.LM379148	 Tolerance and resistance - Disease resistance,  Other,  Character as QTL - Plant growth activity						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0010050 - vegetative phase change, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease, TO:0000357 - growth and development trait	
12561	MIR156K	miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k	MICRORNA156K	micro RNA 156k, microRNA156k, osa-miRNA156k			9	miRBASE accession: MI0001090. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. AY551211. LM379303.	 Tolerance and resistance - Stress tolerance,  Other						GO:0009414 - response to water deprivation, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	
12562	MIR156L	miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p	MICRORNA156L	micro RNA 156l, microRNA156l, osa-miRNA156l			5	miRBASE accession: MI0001091. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. AY551212. LM383063, LM379304.	 Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0046686 - response to cadmium ion, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12563	MIR529B	miR529b, Osa-miR529b, OsmiR529b	MICRORNA529B	MICRORNA529b, osa-miRNA529b, os-miRNA529b	_		4	miRBASE accession: MI0005804. LM380532. Predicted target(s): Os08g0509600, LOC_Os09g21438, Os01g0922600, Os01g0880200, Os05g0228400, Os06g0483500, Os08g0461400.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12564	miR535	OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p	MICRORNA535	micro RNA 535			11	miRBASE accession: MI0003505. LM383086 LM379824.	 Other,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000357 - growth and development trait, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0006032 - panicle size, TO:0000371 - yield trait, TO:0000447 - filled grain number	
12566	miR159B	OsmiR159b, osa-MIR159b	MICRORNA159B	micro RNA 159b			1	miRBASE accession: MI0001093. AY551214. LM379306. target: Os01g0812000 (Kansal et al. 2021).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Insect resistance						GO:0035068 - micro-ribonucleoprotein complex, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0051592 - response to calcium ion, GO:0019722 - calcium-mediated signaling, GO:0002213 - defense response to insect, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus	TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity, TO:0000006 - calcium sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000429 - salt sensitivity, TO:0000477 - panicle blast disease resistance	
12567	miR159C	OsmiR159c, osa-MIR159c	MICRORNA159C	micro RNA 159c			1	miRBASE accession: MI0001094. predicted target(s): UDP-gluce glucyltransferase. AY551259. LM379307.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance						GO:0035195 - gene silencing by miRNA, GO:0002213 - defense response to insect, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease	
12568	miR159D	OsmiR159d, osa-MIR159d	MICRORNA159D	micro RNA 159d			1	miRBASE accession: MI0001095. AY551217. LM379308. GO:1900366: negative regulation of defense response to insect.	 Tolerance and resistance - Insect resistance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0002213 - defense response to insect, GO:0016442 - RNA-induced silencing complex	TO:0000424 - brown planthopper resistance	
12569	miR159E	OsmiR159e, osa-MIR159e	MICRORNA159E	micro RNA 159e			1	miRBASE accession: MI0001096. AY551216. LM379309.	 Tolerance and resistance - Insect resistance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
12570	miR159F	OsmiR159f, osa-MIR159f	MICRORNA159F	micro RNA 159f			1	miRBASE accession: MI0001097. predicted target(s): UDP-gluce glucyltransferase. AY551213. LM379310.	 Tolerance and resistance - Insect resistance,  Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0009414 - response to water deprivation, GO:0016442 - RNA-induced silencing complex, GO:0002213 - defense response to insect, GO:0035068 - micro-ribonucleoprotein complex	TO:0000276 - drought tolerance, TO:0000424 - brown planthopper resistance	
12572	MIR319B	OsmiR319b, Osa-miR319b	MICRORNA319B	rice microRNA319b, MicroRNA319b			1	miRBASE accession: MI0001099. predicted target(s): HEAT repeat family. AY551258. LM379312. TO:0000820: leaf vein morphology trait. Os01g0222001 (AK241923, protein-coding in RapDB) in Yang et al. 2013. GO:1900366: negative regulation of defense response to insect.	 Vegetative organ - Leaf,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0002213 - defense response to insect, GO:0009965 - leaf morphogenesis, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0006002 - proline content, TO:0000424 - brown planthopper resistance, TO:0000370 - leaf width, TO:0000303 - cold tolerance	
12573	MIR160B	miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b	MICRORNA160B	MICRORNA160b, osa-miRNA160b	_		6	miRBASE accession: MI0000664. Target: Os03g0265500 (coronatine-insensitive protein 1, OsCOI2). NolmiR-36 was negatively correlated with OsCOI2, particularly from the seedling to the booting stages, suggesting that this miRNA may play an important role during rice development (Yang et al. 2014). LM383049 LM379151. Target: OsCOMTL2 (Os04g0104900).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
12574	MIR160C	miR160c, osa-miR160c, osa-MIR160cosa-miR160c-3p osa-miR160c-5p	MICRORNA160C	MICRORNA160c, osa-miRNA160bc	_		8	miRBASE accession: MI0000665.LM383050 LM379152	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12575	MIR160D	miR160d, osa-miR160d, osa-MIR160dosa-miR160d-3p osa-miR160d-5p	MICRORNA160D	MICRORNA160d, osa-miRNA160d	_		3	miRBASE accession: MI0000666.LM383051 LM379153	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12576	MIR160E	miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p	MICRORNA160E	MICRORNA160e, osa-miRNA160e	_		7	miRBASE accession: MI0001100. AY551220, AY551221, AY551222, AY551223.LM379313	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12577	MIR160F	miR160f, osa-miR160f, osa-MIR160f, osa-miR160f-3p osa-miR160f-5p	MICRORNA160F	MICRORNA160f, osa-miRNA160f	_		8	miRBASE accession: MI0001101. AY551218, AY551219. LM383064 LM379314. targets: Os06g0685700,Os10g0479900, Os04g0519700, Os02g0628600 (Kansal et al. 2021).	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12579	MIR164B	miR164b, osa-miR164b	MICRORNA164B	MICRORNA164b, osa-miRNA164b	_		5	miRBASE accession: MI0000669.LM379156	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12580	MIR164C	miR164c, osa-miR164c	MICRORNA164C	MICRORNA164c, osa-miRNA164c	_		5	miRBASE accession: MI0001103. AY551226. HM139198-HM139240 (O. sativa, O. rufipogon, O. barthii). LM379316. GO:0090559: regulation of membrane permeability. TO:0000748: leaf morphology trait. GO:1902182: shoot apical meristem development. TO:0006064: rolled leaf. GO:0090470: shoot organ boundary specification.	 Vegetative organ - Leaf,  Seed - Physiological traits,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Culm,  Other						GO:0016442 - RNA-induced silencing complex, GO:0010199 - organ boundary specification between lateral organs and the meristem, GO:0035195 - gene silencing by miRNA, GO:0048366 - leaf development, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000207 - plant height, TO:0000225 - stamen number, TO:0000345 - seed viability, TO:0000655 - leaf development trait, TO:0000437 - male sterility, TO:0000202 - germination ratio, TO:0000430 - germination rate	PO:0001050 - leaf development stage 
12581	MIR164D	miR164d, osa-miR164d	MICRORNA164D	MICRORNA164d, osa-miRNA164d	_		2	miRBASE accession: MI0001104. AY551227. HM139241-HM139292 (O. sativa, O. rufipogon, O. barthii).LM379317	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12582	MIR164F	miR164f, osa-miR164f	MICRORNA164F	MICRORNA164f, osa-miRNA164f	_		5	miRBASE accession: MI0001159. AY551225.LM379362	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12584	MIR166B	miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p, OsmiR166b	MICRORNA166B	MICRORNA166b, osa-miRNA166b, OsmiRNA166b	_		6	miRBASE accession: MI0000671. AY551230. HM139340-HM139349.LM379158 LM383053	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Other						GO:0042546 - cell wall biogenesis, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease, TO:0000051 - stem strength	
12585	MIR166C	miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p	MICRORNA166C	MICRORNA166c, osa-miRNA166c	_		3	miRBASE accession: MI0000672. HM139350-HM139360.LM379159 LM383054	 Other,  Tolerance and resistance - Disease resistance						GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
12586	MIR166D	miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p	MICRORNA166D	MICRORNA166d, osa-miRNA166d	_		2	miRBASE accession: MI0000673. HM139361-HM139367.LM379160 LM383055	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus	TO:0000429 - salt sensitivity, TO:0000074 - blast disease	
12587	MIR166E	miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p	MICRORNA166E	MICRORNA166e, osa-miRNA166e	_		3	miRBASE accession: MI0000674. targets: Os03g0782100, Os03g0269800. HM139368-HM139377. LM379161, LM383056.	 Other,  Tolerance and resistance - Stress tolerance						GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12588	MIR166F	miR166f, osa-miR166f	MICRORNA166F	MICRORNA166f, osa-miRNA166f	_		10	miRBASE accession: MI0000675.LM379162	 Other,  Tolerance and resistance - Disease resistance						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
12589	MIR166G	miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p	MICRORNA166G	MICRORNA166g, osa-miRNA166g	_		12	miRBASE accession: MI0001142. AY551234. LM379348, LM383076. Targets: Os03g0109400, Os10g0480200 (Kansal et al. 2021).	 Tolerance and resistance - Stress tolerance,  Other						GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0035195 - gene silencing by miRNA, GO:0019722 - calcium-mediated signaling, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000303 - cold tolerance	
12590	MIR166H	miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p	MICRORNA166H	MICRORNA166h, osa-miRNA166h	_		2	miRBASE accession: MI0001143. AY551233. HM139378-HM139389.LM379349 LM383077	 Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
12591	MIR166I	miR166i, osa-miR166iosa-miR166i-3p	MICRORNA166I	MICRORNA166i, osa-miRNA166i	_		3	miRBASE accession: MI0001144. HM139390-HM139401. LM379350.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0046686 - response to cadmium ion, GO:0006379 - mRNA cleavage		
12592	MIR166K	miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p	MICRORNA166K	MICRORNA166k, osa-miRNA166k	_		2	miRBASE accession: MI0001107. HM139402-HM139410. LM379319, LM383065. target gene(s): MSTRG.24461.2, Os12g0281300 (Pita).	 Other,  Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion	TO:0000303 - cold tolerance	
12593	MIR166L	miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p	MICRORNA166L	MICRORNA166l, osa-miRNA166l	_		9	miRBASE accession: MI0001108. AY551232. HM139411-HM139421. LM379320, LM383066. target gene(s): MSTRG.24461.2, Os12g0281300 (Pita).	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance						GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000477 - panicle blast disease resistance, TO:0000303 - cold tolerance	
12594	MIR166M	miR166m, osa-miR166m	MICRORNA166M	MICRORNA166m, osa-miRNA166m	_		8	miRBASE accession: MI0001157. AY551231. HM139422-HM139433. LM379360.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0046686 - response to cadmium ion, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12595	MIR166N	miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p	MICRORNA166N	MICRORNA166n, osa-miRNA166n, MICRORNA166j, osa-miRNA166j	_		3	miRBASE accession: MI0001158 (osa-MIR166j, Previous IDs: osa-miR166n). AY551229. HM139434-HM139443 . LM379361, LM383081. osa-MIR166n in Li et al. 2005, Wang et al. 2010, Jeong et al. 2011, Zhai et al. 2013. osa-miR166j in Kozomara and Griffiths-Jones 2011.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage	TO:0000468 - leaf blast disease resistance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000477 - panicle blast disease resistance	
12603	MIR168B	miR168b, osa-miR168b, osa-MIR168b	MICRORNA168B	MICRORNA168b, osa-miRNA168b	_		2	miRBASE accession: MI0001116. target: OsCP1 (Os11g0255300), OsDET1 (Os01g0104600).	 Reproductive organ,  Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0009555 - pollen development, GO:0046686 - response to cadmium ion		PO:0001007 - pollen development stage 
12605	MIR169B	miR169b, osa-miR169b, osa-MIR169b	MICRORNA169B	MICRORNA169b, osa-miRNA169b	_		6	miRBASE accession: MI0001117. AY551240.LM379328	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12606	MIR169C	miR169c, osa-miR169c, osa-MIR169c	MICRORNA169C	MICRORNA169c, osa-miRNA169c	_		4	miRBASE accession: MI0001118. AY551241.LM379329	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12607	MIR169D	miR169d, osa-miR169d, osa-MIR169d	MICRORNA169D	MICRORNA169d, osa-miRNA169d	_		9	miRBASE accession: MI0001119. AY551242.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12608	MIR169E	miR169e, osa-miR169e, osa-MIR169e	MICRORNA169E	MICRORNA169e, osa-miRNA169e	_		2	miRBASE accession: MI0001120.LM379330	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12609	MIR169F	miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2	MICRORNA169F	MICRORNA169f, osa-miRNA169f	_		2	miRBASE accession: MI0001121. AY551244. LM382868.	 Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12610	MIR169H	miR169h, osa-miR169h, osa-MIR169h	MICRORNA169H	MICRORNA169h, osa-miRNA169h	_		8	miRBASE accession: MI0001123.LM379332	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
12611	MIR169I	miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2	MICRORNA169I	MICRORNA169i, osa-miRNA169i	_		8	miRBASE accession: MI0001124.LM383071 LM382869	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease, TO:0000303 - cold tolerance	
12612	MIR169J	miR169j, osa-miR169j, osa-MIR169j	MICRORNA169J	MICRORNA169j, osa-miRNA169j	_		9	miRBASE accession: MI0001125. AY551246.LM379333	 Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000429 - salt sensitivity	
12613	MIR169K	miR169k, osa-miR169k, osa-MIR169k	MICRORNA169K	MICRORNA169k, osa-miRNA169k	_		9	miRBASE accession: MI0001126. AY551243.LM379334	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12614	MIR169L	miR169l, osa-miR169l, osa-MIR169l	MICRORNA169L	MICRORNA169l, osa-miRNA169l	_		8	miRBASE accession: MI0001127.LM379335	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12615	MIR169M	miR169m, osa-miR169m, osa-MIR169m	MICRORNA169M	MICRORNA169m, osa-miRNA169m	_		8	miRBASE accession: MI0001128. AY551245.LM379336	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12616	MIR169N	miR169n, osa-miR169n, osa-MIR169n	MICRORNA169N	MICRORNA169n, osa-miRNA169n	_		11	miRBASE accession: MI0001129.LM379337	 Other,  Tolerance and resistance - Stress tolerance						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000429 - salt sensitivity	
12617	MIR169O	miR169o, osa-miR169o, osa-MIR169o	MICRORNA169O	MICRORNA169o, osa-miRNA169o	_		11	miRBASE accession: MI0001130.LM379338	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12618	MIR1430	miR1430, osa-miR1430, osa-MIR1430	MICRORNA1430	MICRORNA1430, osa-miRNA1430	_		12	miRBASE accession: MI0006970. predicted target(s): CCAAT-binding transcription factor.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12620	MIR171B	miR171b, osa-miR171b	MICRORNA171B	MICRORNA171b, osa-miRNA171b	_		8	miRBASE accession: MI0001133. target gene(s): GRAS transcription factors. AY551250. LM379339.	 Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12621	MIR171C	miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p	MICRORNA171C	MICRORNA171c, osa-miRNA171c, delayed heading	_	dh	4	miRBASE accession: MI0001134. target gene(s): GRAS transcription factors. AY551251. LM379340, LM383072. The corresponding mRNA of Os04g0623901 (OsMIR171c) is AK242153, which is predicted to encode a precursor of the osa-miR171c. The dh mutant presented one T-DNA insertion site in the promoter region of the gene Os04g0623901 (Fan et al. 2015). TO:0000748: leaf anatomy and morphology trait.	 Other,  Reproductive organ - Heading date,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0623901					GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0010228 - vegetative to reproductive phase transition, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0048573 - photoperiodism, flowering, GO:0035195 - gene silencing by miRNA	TO:0002616 - flowering time, TO:0006020 - shoot apical meristem development, TO:0000137 - days to heading	PO:0000037 - shoot apex , PO:0020148 - shoot apical meristem 
12622	MIR171D	miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p	MICRORNA171D	MICRORNA171d, osa-miRNA171d	_		10	miRBASE accession: MI0001135. AY551247. LM379341, LM383073. target gene(s): GRAS transcription factors .target gene(s): MSTRG.16012.6, Os02g0783700(OsLKR/SDH), Os05g0518600(OsTPS1).	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12623	MIR171E	miR171e, osa-miR171e, osa-miR171e-3p, osa-miR171e-5p	MICRORNA171E	MICRORNA171e, osa-miRNA171e	_		3	miRBASE accession: MI0001136. target gene(s): GRAS transcription factors. AY551248. LM379342, LM383074. target gene(s): MSTRG.16012.6, Os02g0783700(OsLKR/SDH), Os05g0518600(OsTPS1).	 Other,  Tolerance and resistance - Stress tolerance						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12624	MIR171F	miR171f, osa-miR171f, osa-miR171f-3p osa-miR171f-5p	MICRORNA171F	MICRORNA171f	_		3	miRBASE accession: MI0001137. target gene(s): GRAS transcription factors. AY551249.LM379343 LM383075	 Other,  Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000276 - drought tolerance	
12625	MIR171G	miR171g, osa-miR171g	MICRORNA171G	MICRORNA171g, osa-miRNA171g	_		7	miRBASE accession: MI0001138. target gene(s): GRAS transcription factors. LM379344.	 Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0046686 - response to cadmium ion		
12626	MIR171H	miR171h, osa-miR171h	MICRORNA171H	MICRORNA171h, osa-miRNA171h	_		4	miRBASE accession: MI0001147. target gene(s): GRAS transcription factors.LM379352	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12627	MIR171I	miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p	MICRORNA171I	MICRORNA171i, osa-miRNA171i	_		3	miRBASE accession: MI0001155. target gene(s): GRAS transcription factors. AY551252.LM379358 LM383080	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000429 - salt sensitivity	
12629	MIR390	OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p	MICRORNA390	rice microRNA390			3	miRBASE accession: MI0001690. Target gene: Os02g0194400 (OsSRK). LM383082, LM379515. TO:0006059: cadmium concentration. predicted target: Os03g0738400, Os07g0490400. target gene: Os04g0571600 (OsMATE19).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Other,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance						GO:0009733 - response to auxin stimulus, GO:0042742 - defense response to bacterium, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0009414 - response to water deprivation, GO:0009411 - response to UV, GO:0046688 - response to copper ion, GO:0006379 - mRNA cleavage, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0035068 - micro-ribonucleoprotein complex, GO:0010162 - seed dormancy, GO:0010311 - lateral root formation	TO:0000253 - seed dormancy, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity, TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0000025 - root tip , PO:0020121 - lateral root , PO:0005029 - root primordium 
12630	MIR394	OsmiR394, miR394, osa-MIR394	MICRORNA394	MICRORNA394	_		2	miRBASE accession: MI0001027. LM379279. a target gene: LC4 (Os01g0923900). GO:2000024: regulation of leaf development. TO:0000829: leaf lamina morphology trait. 	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0001558 - regulation of cell growth, GO:0051510 - regulation of unidimensional cell growth, GO:0009733 - response to auxin stimulus, GO:0048366 - leaf development	TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending	
12631	MIR395A	OsmiR395a, miR395a, osa-MIR395a	MICRORNA395A	MICRORNA395a	_		4	miRBASE accession: MI0001042.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12632	MIR395B	OsmiR395b, miR395b, osa-MIR395b	MICRORNA395B	MICRORNA395b	_		4	miRBASE accession: MI0001028. target gene(s): SULTR2 and APS1. predicted target(s): SULTR1. miR395.2 was specifically induced by sulfate starvation stress.LM379280	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12633	MIR395C	OsmiR395c, miR395c, osa-MIR395c	MICRORNA395C	MICRORNA395c	_		4	miRBASE accession: MI0001041. LM379290. predicted target: Os03g0738400, Os03g0743900.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage	TO:0000303 - cold tolerance	
12634	MIR395D	OsmiR395d, miR395d, osa-MIR395d	MICRORNA395D	MICRORNA395d	_		4	miRBASE accession: MI0001029.LM379281	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12635	MIR395E	OsmiR395e, miR395e, osa-MIR395e	MICRORNA395E	MICRORNA395e	_		4	miRBASE accession: MI0001030.LM379282	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12636	MIR395F	OsmiR395f, miR395f, osa-MIR395f	MICRORNA395F	MICRORNA395f	_		4	miRBASE accession: MI0001043.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12637	MIR395G	OsmiR395g, miR395g, osa-MIR395g	MICRORNA395G	MICRORNA395g	_		4	miRBASE accession: MI0001031.LM379283	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12638	MIR395H	OsmiR395h, miR395h, osa-MIR395h, OsamiR395h	MICRORNA395H	MICRORNA395h	_		8	miRBASE accession: MI0001032. LM379284. the predicted target genes: Os03g0743900, Os03g0195300, Os03g0195500, Os06g0143700 .	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0009970 - cellular response to sulfate starvation, GO:0055063 - sulfate ion homeostasis, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12639	MIR395I	OsmiR395i, miR395i, osa-MIR395i	MICRORNA395I	MICRORNA395i	_		8	miRBASE accession: MI0001033.LM379285	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12640	MIR395J	OsmiR395j, miR395j, osa-MIR395j	MICRORNA395J	MICRORNA395j	_		8	miRBASE accession: MI0001034.LM379286	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12641	MIR395K	OsmiR395k, miR395k, osa-MIR395k	MICRORNA395K	MICRORNA395k	_		8	miRBASE accession: MI0001035.LM379287	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12642	MIR395L	OsmiR395l, miR395l, osa-MIR395l	MICRORNA395L	MICRORNA395l	_		8	miRBASE accession: MI0001036. LM379288. target gene: NBSGO35 (LOC_Os11g44580).	 Other,  Tolerance and resistance - Disease resistance						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12643	MIR395M	OsmiR395m, miR395m, osa-MIR395m	MICRORNA395M	MICRORNA395m	_		4	miRBASE accession: MI0005084.LM380019	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12644	MIR395N	OsmiR395n, miR395n, osa-MIR395n	MICRORNA395N	MICRORNA395n	_		4	miRBASE accession: MI0005085.LM380020	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12645	MIR395O	OsmiR395o, miR395o, osa-MIR395o	MICRORNA395O	MICRORNA395o	_		4	miRBASE accession: MI0005086. predicted target: Os03g0738400, Os03g0743900.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000303 - cold tolerance	
12646	MIR395P	OsmiR395p, miR395p, osa-MIR395p	MICRORNA395P	MICRORNA395p	_		4	miRBASE accession: MI0005087.LM380021	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12647	MIR395Q	OsmiR395q, miR395q, osa-MIR395q	MICRORNA395Q	MICRORNA395q	_		4	miRBASE accession: MI0005088.LM380022	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12648	MIR395R	OsmiR395r, miR395r, osa-MIR395r	MICRORNA395R	MICRORNA395r	_		4	miRBASE accession: MI0005092.LM380023	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12649	MIR395S	OsmiR395s, miR395s, osa-MIR395s	MICRORNA395S	MICRORNA395s	_		4	miRBASE accession: MI0001037.LM379289	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12650	MIR395T	OsmiR395t, miR395t, osa-MIR395t	MICRORNA395T	MICRORNA395t	_		9	miRBASE accession: MI0001038.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12651	MIR395U	OsmiR395u, miR395u, osa-MIR395u	MICRORNA395U	MICRORNA395u	_		9	miRBASE accession: MI0001044.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12652	MIR395V	OsmiR395v, miR395v, osa-MIR395v	MICRORNA395V	MICRORNA395v	_		9	miRBASE accession: MI0005090.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12653	MIR395W	OsmiR395w, miR395w, osa-MIR395w	MICRORNA395W	MICRORNA395w	_		9	miRBASE accession: MI0005091.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12654	MIR396C	miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c	MICRORNA396C	MICRORNA396c, osa-miRNA396c	_		2	miRBASE accession: MI0001048. predicted target(s): nitrate-induced NOI protein. LM383062, LM379293. target: Os02g0701300 (GS2/OsGRF4).	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits,  Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold	TO:0000396 - grain yield, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000397 - grain size	
12655	MIR396D	miR396d, osa-miR396d, osa-MIR396d	MICRORNA396D	MICRORNA396d, osa-miRNA396d	_		4	miRBASE accession: MI0013049. TO:0000816: inflorescence bract anatomy and morphology trait. LM381452.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0046686 - response to cadmium ion, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0009409 - response to cold	TO:0006022 - floral organ development trait, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000240 - sterile lemma length	
12656	MIR396F	miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p	MICRORNA396F	MICRORNA396f, osa-miRNA396f	_		2	miRBASE accession: MI0010563. HM139845-HM139881 (O. sativa, O. rufipogon).LM381785 LM381200	 Other,  Tolerance and resistance - Disease resistance						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
12657	MIR397A	miR397a, osa-miR397a, osa-MIR397a, OsmiR397a	MICRORNA397A	MICRORNA397a, osa-miRNA397a	_		6	miRBASE accession: MI0001049. The reported target for OsmiR397 is LOC_Os05g38420 (OsLAC) (Zhang et al. 2013). LM379294. target gene: Laccase (LOC_Os03g16610.1). GO:0120126: response to copper ion starvation.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other						GO:0009414 - response to water deprivation, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000180 - spikelet fertility	
12658	MIR397B	miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b	MICRORNA397B	MICRORNA397b, osa-miRNA397b	_		2	miRBASE accession: MI0001050. The expression of miR397b.2 is induced by heat stress. target gene(s): L-ascorbate oxidase. The reported target for OsmiR397 is LOC_Os05g38420 (OsLAC) (Zhang et al. 2013). target gene: Laccase (LOC_Os03g16610.1).  LM379295. PO:0030123: panicle inflorescence. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus	TO:0000605 - hydrogen peroxide content, TO:0000180 - spikelet fertility, TO:0000074 - blast disease	PO:0020141 - stem node 
12659	MIR398A	miR398a, osa-miR398a, osa-MIR398a	MICRORNA398A	MICRORNA398a, osa-miRNA398a	_		10	miRBASE accession: MI0001051.	 Other,  Seed - Morphological traits,  Vegetative organ - Culm,  Character as QTL - Yield and productivity						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000146 - seed length, TO:0000149 - seed width, TO:0000207 - plant height, TO:0000592 - 1000-dehulled grain weight, TO:0000447 - filled grain number, TO:0006032 - panicle size	
12660	MIR398B	miR398b, osa-miR398b, osa-MIR398b, OsmiR398b	MICRORNA398B	MICRORNA398b, osa-miRNA398b	_		7	miRBASE accession: MI0001052. predicted target(s): RBC small chain C. LM379296. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other						GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
12661	MIR399B	OsmiR399b, osa-MIR399b, miR399b	MICRORNA399B	MICRORNA399b, osa-miRNA399b	_		2	miRBASE accession: MI0001054. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) LM379298. Target: OsPP2C (Os03g0761100).	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12662	MIR399C	OsmiR399c, osa-MIR399c, miR399c	MICRORNA399C	MICRORNA399c, osa-miRNA399c	_		5	miRBASE accession: MI0001055. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)LM379299	 Other,  Tolerance and resistance - Stress tolerance						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12663	MIR399E	OsmiR399e, osa-MIR399e	MICRORNA399E	MICRORNA399e	_		1	miRBASE accession: MI0001057. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0010106 - cellular response to iron ion starvation, GO:0051365 - cellular response to potassium ion starvation		
12664	MIR399G	OsmiR399g, osa-MIR399g	MICRORNA399G	MICRORNA399g	_		2	miRBASE accession: MI0001059. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12665	MIR399H	OsmiR399h, osa-MIR399h	MICRORNA399H	MICRORNA399h	_		5	miRBASE accession: MI0001060. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011)LM379301	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12666	MIR399I	OsmiR399i, osa-MIR399i, miR399i	MICRORNA399I	MICRORNA399i, osa-miRNA399i	_		2	miRBASE accession: MI0001061. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011) HM139968-HM140009 (O. sativa, O. rufipogon).	 Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0051365 - cellular response to potassium ion starvation, GO:0010106 - cellular response to iron ion starvation, GO:0016442 - RNA-induced silencing complex, GO:0016036 - cellular response to phosphate starvation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12667	MIR399K	OsmiR399k, osa-MIR399k	MICRORNA399K	MICRORNA399k	_		5	miRBASE accession: MI0001063. miR399 was upregulated by phosphate starvation.(Jeong et al. 2011).  GO:0072732: cellular response to calcium ion starvation.	 Other,  Tolerance and resistance - Stress tolerance						GO:0010106 - cellular response to iron ion starvation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0051365 - cellular response to potassium ion starvation, GO:0016036 - cellular response to phosphate starvation		
12668	MIR413	miR413, osa-MIR413	MICRORNA413	MICRORNA413	_		12	miRBASE accession: MI0001433.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12669	MIR415	miR415, osa-MIR415	MICRORNA415	MICRORNA415	_		12	miRBASE accession: MI0001435.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12670	MIR416	miR416, osa-MIR416	MICRORNA416	MICRORNA416	_		4	miRBASE accession: MI0001436.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12671	MIR417	miR417, osa-MIR417	MICRORNA417	MICRORNA417	_		8	miRBASE accession: MI0001437.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12672	MIR418	miR418, osa-MIR418	MICRORNA418	MICRORNA418	_		2	miRBASE accession: MI0001438.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12673	MIR419	miR419, osa-MIR419	MICRORNA419	MICRORNA419	_		12	miRBASE accession: MI0001439.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12674	MIR420	miR420, osa-MIR420	MICRORNA420	MICRORNA420	_			miRBASE accession: MI0001440. (Dead miRNA entry : The pattern of reads that map to the MIR420 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12675	MIR426	miR426, osa-MIR426	MICRORNA426	MICRORNA426	_		5	miRBASE accession: MI0001442.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12676	MIR435	miR435, osa-MIR435	MICRORNA435	MICRORNA435	_		3	miRBASE accession: MI0001687. LM379513. the target gene of osa-miR435: LOC_Os02g44360.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12677	MIR437	miR437, osa-MIR437	MICRORNA437	MICRORNA437	_		2	miRBASE accession: MI0001688.LM379514	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12678	MIR438	miR438, osa-MIR438	MICRORNA438	MICRORNA438	_		6	miRBASE accession: MI0001689.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12679	MIR439A	miR439a, osa-MIR439a	MICRORNA439A	MICRORNA439a	_		1	miRBASE accession: MI0001691.LM379516	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12680	MIR439B	miR439b, osa-MIR439b	MICRORNA439B	MICRORNA439b	_		10	miRBASE accession: MI0001692.LM379517	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12681	MIR439C	miR439c, osa-MIR439c	MICRORNA439C	MICRORNA439c	_		7	miRBASE accession: MI0001693.LM379518	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12682	MIR439D	miR439d, osa-MIR439d	MICRORNA439D	MICRORNA439d	_		3	miRBASE accession: MI0001694.LM379519	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12683	MIR439E	miR439e, osa-MIR439e	MICRORNA439E	MICRORNA439e	_		8	miRBASE accession: MI0001695.LM379520	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12684	MIR439F	miR439f, osa-MIR439f	MICRORNA439F	MICRORNA439f	_		9	miRBASE accession: MI0001696. LM379521.	 Tolerance and resistance - Stress tolerance,  Other						GO:0009269 - response to desiccation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000394 - drought related trait	
12685	MIR439G	miR439g, osa-MIR439g	MICRORNA439G	MICRORNA439g	_		8	miRBASE accession: MI0001697. LM379522.	 Tolerance and resistance - Disease resistance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
12686	MIR439H	miR439h, osa-MIR439h	MICRORNA439H	MICRORNA439h	_		6	miRBASE accession: MI0001698.LM379523	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12687	MIR439J	miR439j, osa-MIR439j	MICRORNA439J	MICRORNA439j	_		10	miRBASE accession: MI0001700.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12688	MIR440	miR440, osa-MIR440	MICRORNA440	MICRORNA440	_		11	miRBASE accession: MI0001701.LM379524	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12689	MIR441A	miR441a, osa-MIR441a	MICRORNA441A	MICRORNA441a	_			miRBASE accession: MI0001704. (Dead miRNA entry: The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12690	MIR441B	miR441b, osa-MIR441b	MICRORNA441B	MICRORNA441b	_			miRBASE accession: MI0001705. (Dead miRNA entry: The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12691	MIR441C	miR441c, osa-MIR441c	MICRORNA441C	MICRORNA441c	_			miRBASE accession: MI0001706. (Dead miRNA entry: The pattern of reads that map to the MIR441 loci from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12692	MIR442	miR442, osa-MIR442	MICRORNA442	MICRORNA442	_			miRBASE accession: MI0001707. (Dead miRNA entry: The pattern of reads that map to the MIR442 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). 	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12693	MIR443	miR443, osa-MIR443	MICRORNA443	MICRORNA443	_		3	miRBASE accession: MI0001708.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12694	MIR444B	miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2	MICRORNA444B	MICRORNA444b	_			miRBASE accession: MI0006974. LM380734, LM380733.  GO:2000488: positive regulation of brassinosteroid biosynthetic process. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0046686 - response to cadmium ion, GO:0060359 - response to ammonium ion, GO:0016132 - brassinosteroid biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0048364 - root development, GO:0009269 - response to desiccation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009734 - auxin mediated signaling pathway, GO:0009873 - ethylene mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0050832 - defense response to fungus	TO:0000040 - panicle length, TO:0000382 - 1000-seed weight, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000255 - sheath blight disease resistance, TO:0000394 - drought related trait, TO:0002676 - brassinosteroid content, TO:0000656 - root development trait, TO:0000227 - root length, TO:0000547 - primary branch number	PO:0009005 - root , PO:0007520 - root development stage 
12695	MIR444C	miR444c, osa-MIR444c, osa-miR444c, osa-miR444c.1, osa-miR444c.2	MICRORNA444C	MICRORNA444c	_			miRBASE accession: MI0006975. LM380736, LM380735. GO:2000280: regulation of root development. GO:2000488: positive regulation of brassinosteroid biosynthetic process. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Root						GO:0048364 - root development, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0060359 - response to ammonium ion, GO:0009742 - brassinosteroid mediated signaling, GO:0016132 - brassinosteroid biosynthetic process	TO:0000227 - root length, TO:0002676 - brassinosteroid content, TO:0000656 - root development trait	PO:0009005 - root , PO:0007520 - root development stage 
12696	MIR444D	miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3	MICRORNA444D	MICRORNA444d	_			miRBASE accession: MI0006976. LM380739, LM380738, LM380737. Target: OsEREBP96 (Os05g0549800). GO:2000488: positive regulation of brassinosteroid biosynthetic process. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Root						GO:0009742 - brassinosteroid mediated signaling, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0060359 - response to ammonium ion, GO:0035068 - micro-ribonucleoprotein complex, GO:0048364 - root development, GO:0016442 - RNA-induced silencing complex, GO:0016132 - brassinosteroid biosynthetic process	TO:0002676 - brassinosteroid content, TO:0000656 - root development trait, TO:0000227 - root length	PO:0009005 - root , PO:0007520 - root development stage 
12697	MIR444E	miR444e, osa-MIR444e	MICRORNA444E	MICRORNA444e	_			miRBASE accession: MI0006977. LM380740. the target genes of osa-miR444e: LOC_Os02g36924, LOC_Os05g47560, LOC_Os08g06510, LOC_Os07g45120, and LOC_Os09g06970. GO:2000488: positive regulation of brassinosteroid biosynthetic process. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Other,  Tolerance and resistance - Stress tolerance						GO:0009742 - brassinosteroid mediated signaling, GO:0035195 - gene silencing by miRNA, GO:0060359 - response to ammonium ion, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016132 - brassinosteroid biosynthetic process, GO:0016442 - RNA-induced silencing complex, GO:0048364 - root development	TO:0000656 - root development trait, TO:0000227 - root length, TO:0002676 - brassinosteroid content	PO:0009005 - root , PO:0007520 - root development stage 
12698	MIR444F	miR444f, osa-MIR444f	MICRORNA444F	MICRORNA444f	_			miRBASE accession: MI0006978. predicted target(s): MADS-box transcription factors. LM380741. GO:2000488: positive regulation of brassinosteroid biosynthetic process. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development. PO:0030104: caryopsis fruit.	 Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Root						GO:0016442 - RNA-induced silencing complex, GO:0016132 - brassinosteroid biosynthetic process, GO:0006379 - mRNA cleavage, GO:0009742 - brassinosteroid mediated signaling, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0048364 - root development, GO:0060359 - response to ammonium ion, GO:0009408 - response to heat	TO:0000656 - root development trait, TO:0000259 - heat tolerance, TO:0002676 - brassinosteroid content, TO:0000227 - root length	PO:0007520 - root development stage , PO:0009005 - root 
12699	MIR445A	miR445a, osa-MIR445a	MICRORNA445A	MICRORNA445a	_			miRBASE accession: MI0001709. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12700	MIR445B	miR445b, osa-MIR445b	MICRORNA445B	MICRORNA445b	_			miRBASE accession: MI0001710. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12701	MIR445C	miR445c, osa-MIR445c	MICRORNA445C	MICRORNA445c	_			miRBASE accession: MI0001711. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12702	MIR445D	miR445d, osa-MIR445d	MICRORNA445D	MICRORNA445d	_			miRBASE accession: MI0001712. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12703	MIR445E	miR445e, osa-MIR445e	MICRORNA445E	MICRORNA445e	_			miRBASE accession: MI0001713. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12704	MIR445F	miR445f, osa-MIR445f	MICRORNA445F	MICRORNA445f	_			miRBASE accession: MI0001714. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12705	MIR445G	miR445g, osa-MIR445g	MICRORNA445G	MICRORNA445g	_			miRBASE accession: MI0001715. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12706	MIR445I	miR445i, osa-MIR445i	MICRORNA445I	MICRORNA445i	_			miRBASE accession: MI0001717. (Dead miRNA entry: The pattern of reads that map to the MIR445 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12707	MIR446	miR446, osa-MIR446	MICRORNA446	MICRORNA446	_			miRBASE accession: MI0001718. (Dead miRNA entry: The pattern of reads that map to the MIR446 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12708	MIR531A	miR531, osa-MIR531, osa-MIR531a	MICRORNA531A	MICRORNA531	_		11	miRBASE accession: MI0003204. 	 Other,  Tolerance and resistance - Stress tolerance						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0009414 - response to water deprivation, GO:0006379 - mRNA cleavage	TO:0000276 - drought tolerance	
12709	MIR531A2	miR531a2, osa-MIR531a2	MICRORNA531A2	MICRORNA531a2	_				 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12710	MIR531B	miR531b, osa-MIR531b	MICRORNA531B	MICRORNA531b	_		1	miRBASE accession: MI0008222. Predicted target(s): Os01g0813700, Os04g0645200, Os09g0536700, Os10g0485500, Os12g0541300, Os02g0681100, Os02g0793400, Os03g0794200, Os04g0563000, Os09g0514900, Os10g0545300, Os11g0144900, LOC_Os11g31140. target gene: ATP binding protein (LOC_Os03g16610.1). target gene: Os11g0186900 (OsACO4).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other,  Seed - Physiological traits - Dormancy						GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0010162 - seed dormancy	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000253 - seed dormancy	
12711	MIR806A	miR806a, osa-MIR806a	MICRORNA806A	MICRORNA806a	_			miRBASE accession: MI0005210. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12712	MIR806B	miR806b, osa-MIR806b	MICRORNA806B	MICRORNA806b	_			miRBASE accession: MI0005211. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12713	MIR806C	miR806c, osa-MIR806c	MICRORNA806C	MICRORNA806c	_			miRBASE accession: MI0005212. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12714	MIR806D	miR806d, osa-MIR806d	MICRORNA806D	MICRORNA806d	_			miRBASE accession: MI0005213. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12715	MIR806E	miR806e, osa-MIR806e	MICRORNA806E	MICRORNA806e	_			miRBASE accession: MI0005214. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12716	MIR806F	miR806f, osa-MIR806f	MICRORNA806F	MICRORNA806f	_			miRBASE accession: MI0005215. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12717	MIR806G	miR806g, osa-MIR806g	MICRORNA806G	MICRORNA806g	_			miRBASE accession: MI0005216. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12718	MIR806H	miR806h, osa-MIR806h	MICRORNA806H	MICRORNA806h	_			miRBASE accession: MI0005217. (Dead miRNA entry: The pattern of reads that map to the MIR806 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12719	MIR807A	miR807a, osa-MIR807a	MICRORNA807A	MICRORNA807a	_			miRBASE accession: MI0005209. (Dead miRNA entry: The pattern of reads that map to the MIR807 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12720	MIR807B	miR807b, osa-MIR807b	MICRORNA807B	MICRORNA807b	_			miRBASE accession: MI0005218. (Dead miRNA entry: The pattern of reads that map to the MIR807 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12721	MIR807C	miR807c, osa-MIR807c	MICRORNA807C	MICRORNA807c	_			miRBASE accession: MI0005219. (Dead miRNA entry: The pattern of reads that map to the MIR807 locus from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12722	MIR808	miR808, osa-MIR808	MICRORNA808	MICRORNA808	_			miRBASE accession: MI0005220. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12723	MIR809A	miR809a, osa-MIR809a	MICRORNA809A	MICRORNA809a	_			miRBASE accession: MI0005221. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12724	MIR809B	miR809b, osa-MIR809b	MICRORNA809B	MICRORNA809b	_			miRBASE accession: MI0005222. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12725	MIR809C	miR809c, osa-MIR809c	MICRORNA809C	MICRORNA809c	_			miRBASE accession: MI0005223. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12726	MIR809D	miR809d, osa-MIR809d	MICRORNA809D	MICRORNA809d	_			miRBASE accession: MI0005224. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12727	MIR809E	miR809e, osa-MIR809e	MICRORNA809E	MICRORNA809e	_			miRBASE accession: MI0005225. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12728	MIR809F	miR809f, osa-MIR809f	MICRORNA809F	MICRORNA809f	_			miRBASE accession: MI0005226. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12729	MIR809G	miR809g, osa-MIR809g	MICRORNA809G	MICRORNA809g	_			miRBASE accession: MI0005227. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12730	MIR809H	miR809h, osa-MIR809h	MICRORNA809H	MICRORNA809h	_			miRBASE accession: MI0005228. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12731	MIR811A	miR811a, osa-miR811a, osa-MIR811a	MICRORNA811A	MICRORNA811a, osa-miRNA811a	_			miRBASE accession: MI0005230. (Dead miRNA entry: The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12732	MIR811B	miR811b, osa-miR811b, osa-MIR811b	MICRORNA811B	MICRORNA811b, osa-miRNA811b	_			miRBASE accession: MI0005231. (Dead miRNA entry: The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12733	MIR811C	miR811c, osa-miR811c, osa-MIR811c	MICRORNA811C	MICRORNA811c, osa-miRNA811c	_			miRBASE accession: MI0005232. (Dead miRNA entry: The pattern of reads that map to the MIR811/MIR2862 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12734	MIR812A	miR812a, osa-miR812a, osa-MIR812a	MICRORNA812A	MICRORNA812a, osa-miRNA812a	_		1	miRBASE accession: MI0005233. LM380041	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12735	MIR812B	miR812b, osa-miR812b, osa-MIR812b	MICRORNA812B	MICRORNA812b, osa-miRNA812b	_		2	miRBASE accession: MI0005234. LM380042	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12736	MIR812C	miR812c, osa-miR812c, osa-MIR812c	MICRORNA812C	MICRORNA812c, osa-miRNA812c	_		6	miRBASE accession: MI0005235. LM380043	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12737	MIR812D	miR812d, osa-miR812d, osa-MIR812d	MICRORNA812D	MICRORNA812d, osa-miRNA812d	_		7	miRBASE accession: MI0005236. LM380044	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12738	MIR812E	miR812e, osa-miR812e, osa-MIR812e	MICRORNA812E	MICRORNA812e, osa-miRNA812e	_		8	miRBASE accession: MI0005237. LM380045	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12739	MIR812F	miR812f, osa-miR812f, osa-MIR812f	MICRORNA812F	MICRORNA812f, osa-miRNA812f	_		4	miRBASE accession: MI0008271. Predicted target(s): Os02g0176100. LM381046.	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
12740	MIR812H	miR812h, osa-miR812h, osa-MIR812h	MICRORNA812H	MICRORNA812h, osa-miRNA812h	_		3	miRBASE accession: MI0008297. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381062	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12741	MIR812I	miR812i, osa-miR812i, osa-MIR812i	MICRORNA812I	MICRORNA812i, osa-miRNA812i	_		7	miRBASE accession: MI0008298. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381063	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12742	MIR812J	miR812j, osa-miR812j, osa-MIR812j	MICRORNA812J	MICRORNA812j, osa-miRNA812j	_		8	miRBASE accession: MI0008299. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381064	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12743	MIR813	miR813, osa-miR813, osa-MIR813	MICRORNA813	MICRORNA813, osa-miRNA813	_			miRBASE accession: MI0005238. (Dead miRNA entry: The pattern of reads that map to the MIR813 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12744	MIR814A	miR814a, osa-miR814a, osa-MIR814a	MICRORNA814A	MICRORNA814a, osa-miRNA814a	_		1	miRBASE accession: MI0005239.LM380046	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12745	MIR814B	miR814b, osa-miR814b, osa-MIR814b	MICRORNA814B	MICRORNA814b, osa-miRNA814b	_		2	miRBASE accession: MI0005240.LM380047	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12746	MIR814C	miR814c, osa-miR814c, osa-MIR814c	MICRORNA814C	MICRORNA814c, osa-miRNA814c	_		2	miRBASE accession: MI0005241.LM380048	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12747	MIR815A	miR815a, osa-miR815a, osa-MIR815a, OsmiR815a	MICRORNA815A	MICRORNA815a, osa-miRNA815a	_		5	miRBASE accession: MI0005242.LM380049	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12748	MIR815B	miR815b, osa-miR815b, osa-MIR815b, OsmiR815b	MICRORNA815B	MICRORNA815b, osa-miRNA815b	_		5	miRBASE accession: MI0005243.LM380050	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12749	MIR815C	miR815c, osa-miR815c, osa-MIR815c, OsmiR815c	MICRORNA815C	MICRORNA815c, osa-miRNA815c	_		7	miRBASE accession: MI0005244. LM380051. target gene: OsWAK129b  (LOC_Os12g42070). 	 Other,  Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease	
12750	MIR816	miR816, osa-miR816, osa-MIR816	MICRORNA816	MICRORNA816, osa-miRNA816	_		10	miRBASE accession: MI0005245.LM380052	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12751	MIR817	miR817, osa-miR817, osa-MIR817	MICRORNA817	MICRORNA817, osa-miRNA817	_		2	miRBASE accession: MI0005246.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12752	MIR818A	miR818a, osa-miR818a, osa-MIR818a	MICRORNA818A	MICRORNA818a, osa-miRNA818a	_		1	miRBASE accession: MI0005247. LM380053. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12753	MIR818B	miR818b, osa-miR818b, osa-MIR818b	MICRORNA818B	MICRORNA818b, osa-miRNA818b	_		2	miRBASE accession: MI0005248. LM380054. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12754	MIR818C	miR818c, osa-miR818c, osa-MIR818c	MICRORNA818C	MICRORNA818c, osa-miRNA818c	_		2	miRBASE accession: MI0005249. LM380055. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12755	MIR818D	miR818d, osa-miR818d, osa-MIR818d	MICRORNA818D	MICRORNA818d, osa-miRNA818d	_		4	miRBASE accession: MI0005250. LM380056. predicted target: OsDDP6 (Os05g0594700).	 Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000303 - cold tolerance	
12756	MIR818E	miR818e, osa-miR818e, osa-MIR818e	MICRORNA818E	MICRORNA818e, osa-miRNA818e	_		7	miRBASE accession: MI0005251. LM380057. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12757	MIR819A	miR819a, osa-miR819a, osa-MIR819a	MICRORNA819A	MICRORNA819a, osa-miRNA819a	_			miRBASE accession: MI0005252. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12758	MIR819B	miR819b, osa-miR819b, osa-MIR819b	MICRORNA819B	MICRORNA819b, osa-miRNA819b	_			miRBASE accession: MI0005253. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12759	MIR819C	miR819c, osa-miR819c, osa-MIR819c	MICRORNA819C	MICRORNA819c, osa-miRNA819c	_			miRBASE accession: MI0005254. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12760	MIR819D	miR819d, osa-miR819d, osa-MIR819d	MICRORNA819D	MICRORNA819d, osa-miRNA819d	_			miRBASE accession: MI0005255. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12761	MIR819E	miR819e, osa-miR819e, osa-MIR819e	MICRORNA819E	MICRORNA819e, osa-miRNA819e	_			miRBASE accession: MI0005256. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12762	MIR819F	miR819f, osa-miR819f, osa-MIR819f	MICRORNA819F	MICRORNA819f, osa-miRNA819f	_			miRBASE accession: MI0005257. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12763	MIR819G	miR819g, osa-miR819g, osa-MIR819g	MICRORNA819G	MICRORNA819g, osa-miRNA819g	_			miRBASE accession: MI0005258. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12764	MIR819H	miR819h, osa-miR819h, osa-MIR819h	MICRORNA819H	MICRORNA819h, osa-miRNA819h	_			miRBASE accession: MI0005259. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12765	MIR819I	miR819i, osa-miR819i, osa-MIR819i	MICRORNA819I	MICRORNA819i, osa-miRNA819i	_			miRBASE accession: MI0005260. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12766	MIR819J	miR819j, osa-miR819j, osa-MIR819j	MICRORNA819J	MICRORNA819j, osa-miRNA819j	_			miRBASE accession: MI0005261. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12767	MIR819K	miR819k, osa-miR819k, osa-MIR819k	MICRORNA819K	MICRORNA819k, osa-miRNA819k	_			miRBASE accession: MI0005262. (Dead miRNA entry: The pattern of reads that map to the MIR808/809/819 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12768	MIR820A	miR820a, osa-miR820a, osa-MIR820a, OsmiR820a	MICRORNA820A	MICRORNA820a, osa-miRNA820a	_		1	miRBASE accession: MI0005263. target: Os03g0110800 (DRM2). LM380058. predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0009408 - response to heat, GO:0006379 - mRNA cleavage, GO:0009651 - response to salt stress, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
12769	MIR820B	miR820b, osa-miR820b, osa-MIR820b, OsmiR820b	MICRORNA820B	MICRORNA820b, osa-miRNA820b	_		7	miRBASE accession: MI0005264. target: Os03g0110800 (DRM2). LM380059. predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
12770	MIR820C	miR820c, osa-miR820c, osa-MIR820c, OsmiR820c	MICRORNA820C	MICRORNA820c, osa-miRNA820c	_		10	miRBASE accession: MI0005265. target: Os03g0110800 (DRM2). LM380060. predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0009651 - response to salt stress, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
12771	MIR821A	miR821a, osa-miR821a, osa-MIR821a	MICRORNA821A	MICRORNA821a, osa-miRNA821a	_		3	miRBASE accession: MI0005266.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12772	MIR821B	miR821b, osa-miR821b, osa-MIR821b	MICRORNA821B	MICRORNA821b, osa-miRNA821b	_		7	miRBASE accession: MI0005267.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12773	MIR821C	miR821c, osa-miR821c, osa-MIR821c	MICRORNA821C	MICRORNA821c, osa-miRNA821c	_		8	miRBASE accession: MI0005268.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12775	MIR1317	miR1317, osa-miR1317, osa-MIR1317	MICRORNA1317	MICRORNA1317, osa-miRNA1317	_		10	miRBASE accession: MI0009714. (Dead miRNA entry: Forward to:MI0008292 (osa-MIR1882e),  The sequences annotated as MIR1317 and MIR1882e in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.)	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12776	MIR1318	miR1318, osa-miR1318, osa-MIR1318	MICRORNA1318	MICRORNA1318, osa-miRNA1318	_		7	miRBASE accession: MI0009715. (Dead miRNA entry: Forward to:MI0006972 (osa-MIR1432),  The sequences annotated as MIR1318 and MIR1432 in miRBase 19 map to a single locus in the MSU7 genome assembly. The entries are merged in miRBase 20.) HM138917-HM138970 (O. sativa, O. rufipogon, O. barthii).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12777	MIR1319	miR1319, osa-miR1319, osa-MIR1319, osa-MIR1319a, osa-miR1319a	MICRORNA1319	MICRORNA1319, osa-miRNA1319	_		11	miRBASE accession: MI0009716. LM381130.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12778	MIR1320	miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p	MICRORNA1320	MICRORNA1320, osa-miRNA1320	_		6	miRBASE accession: MI0009717.LM381781 LM381131	 Tolerance and resistance - Disease resistance,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12779	MIR1423	miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p	MICRORNA1423	MICRORNA1423, osa-miRNA1423	_		4	miRBASE accession: MI0006963. miR1423b in Zhu et al. 2008.LM381774	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12780	MIR1424	miR1424, osa-miR1424, osa-MIR1424	MICRORNA1424	MICRORNA1424, osa-miRNA1424	_		7	miRBASE accession: MI0006964.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12782	MIR1426	miR1426, osa-miR1426, osa-MIR1426	MICRORNA1426	MICRORNA1426, osa-miRNA1426	_		1	miRBASE accession: MI0006966.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12783	MIR1427	miR1427, osa-miR1427, osa-MIR1427	MICRORNA1427	MICRORNA1427, osa-miRNA1427	_		8	miRBASE accession: MI0006967. Predicted target in Jeong et al. 2008: class I Clp ATPase C1 (Os04g0397100). Target gene in Sunkar et al. 2008: Os04g0397100, Os06g0260500.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12784	MIR1428A	miR1428a, osa-miR1428a, osa-MIR1428a	MICRORNA1428A	MICRORNA1428a, osa-miRNA1428a	_		1	miRBASE accession: MI0006968.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12785	MIR1428B	miR1428b, osa-miR1428b, osa-MIR1428b	MICRORNA1428B	MICRORNA1428b, osa-miRNA1428b	_		1	miRBASE accession: MI0008235. Predicted target(s): Os12g0479300.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12786	MIR1428C	miR1428c, osa-miR1428c, osa-MIR1428c	MICRORNA1428C	MICRORNA1428c, osa-miRNA1428c	_		2	miRBASE accession: MI0008237. Predicted target(s): Os12g0479300.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12787	MIR1428D	miR1428d, osa-miR1428d, osa-MIR1428d	MICRORNA1428D	MICRORNA1428d, osa-miRNA1428d	_		3	miRBASE accession: MI0008238. Stem-loop predicted structures for osa-miR1428e and osa-miR1428d found in AK102950 (Os03g0611100). Predicted target(s): Os12g0479300.	 Other	Os03g0611100					GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12789	MIR1428G	miR1428g, osa-miR1428g, osa-MIR1428g	MICRORNA1428G	MICRORNA1428g, osa-miRNA1428g	_		10	miRBASE accession: MI0010549.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12790	MIR1429	miR1429, osa-miR1429, osa-MIR1429osa-miR1429-3p osa-miR1429-5p	MICRORNA1429	MICRORNA1429, osa-miRNA1429	_		8	miRBASE accession: MI0006969.LM380729 LM381145	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12791	MIR1431	miR1431, osa-miR1431, osa-MIR1431	MICRORNA1431	MICRORNA1431, osa-miRNA1431	_		1	miRBASE accession: MI0006971.LM380730	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12792	MIR1435	miR1435, osa-miR1435, osa-MIR1435	MICRORNA1435	MICRORNA1435, osa-miRNA1435	_		1	miRBASE accession: MI0007021.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12793	MIR1436	miR1436, osa-miR1436, osa-MIR1436	MICRORNA1436	MICRORNA1436, osa-miRNA1436	_		1	miRBASE accession: MI0007022. LM380744. predicted target: OsDDP6 (Os05g0594700).	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12794	MIR1437	miR1437, osa-miR1437, osa-MIR1437, osa-MIR1437a, osa-miR1437a	MICRORNA1437	MICRORNA1437, osa-miRNA1437	_		8	miRBASE accession: MI0007024. LM380745.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12795	MIR1438	miR1438, osa-miR1438, osa-MIR1438	MICRORNA1438	MICRORNA1438, osa-miRNA1438	_		10	miRBASE accession: MI0007025.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12796	MIR1439	miR1439, osa-miR1439, osa-MIR1439	MICRORNA1439	MICRORNA1439, osa-miRNA1439	_		12	miRBASE accession: MI0007031. LM380748. Target: OsFbox6 OsFBX5 OsSTA12 (Os01g0281000).	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12797	MIR1440	miR1440, osa-miR1440, osa-MIR1440	MICRORNA1440	MICRORNA1440, osa-miRNA1440	_		9	miRBASE accession: MI0007028 (osa-MIR1440a).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12798	MIR1441	miR1441, osa-miR1441, osa-MIR1441	MICRORNA1441	MICRORNA1441, osa-miRNA1441	_		12	miRBASE accession: MI0007029.LM380746	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12799	MIR1442	miR1442, osa-miR1442, osa-MIR1442	MICRORNA1442	MICRORNA1442, osa-miRNA1442	_		7	miRBASE accession: MI0007030.LM380747	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12800	MIR1846A	miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p	MICRORNA1846A	MICRORNA1846a, osa-miRNA1846a	_		10	miRBASE accession: MI0008242. Predicted target(s): LOC_Os02g43950, LOC_Os10g12320. LM381020. target gene: OsbZIP23 (Os02g0766700). a putative target gene: LOC_Os11g48020 (OsGL1-11).  target gene(s): MSTRG.17424.2, Os05g0554000, Os04g0107650, Os07g0684800, Os05g0482400, Os11g0186900. GO:1904276: regulation of wax biosynthetic process. 	 Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0010025 - wax biosynthetic process, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000303 - cold tolerance	
12801	MIR1846B	miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p	MICRORNA1846B	MICRORNA1846b, osa-miRNA1846b	_		11	miRBASE accession: MI0008243. Predicted target(s): LOC_Os02g43950, LOC_Os10g12320. LM381021. target gene: OsbZIP23 (Os02g0766700). target gene(s): MSTRG.17424.2, Os05g0554000, Os04g0107650, Os07g0684800, Os05g0482400, Os11g0186900. 	 Other,  Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000303 - cold tolerance	
12802	MIR1846C	miR1846c, osa-miR1846c, osa-MIR1846c	MICRORNA1846C	MICRORNA1846c, osa-miRNA1846c	_		12	miRBASE accession: MI0010321. Predicted target(s): LOC_Os02g43950, LOC_Os10g12320. target gene: OsbZIP23 (Os02g0766700). the target of lncRNA XLOC_042442.	 Other,  Tolerance and resistance - Insect resistance						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0002213 - defense response to insect, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000424 - brown planthopper resistance	
12803	MIR1846D	miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p	MICRORNA1846D	MICRORNA1846d, osa-miRNA1846d	_		1	miRBASE accession: MI0008223. Predicted target(s): P0456E05.19, Os02g0707200, Os09g0457400.LM381011 LM381010	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12804	MIR1846E	miR1846e, osa-miR1846e, osa-MIR1846e	MICRORNA1846E	MICRORNA1846e, osa-miRNA1846e	_		9	miRBASE accession: MI0010547. LM381195.  target gene: Os12g0441300 (OsASMT18). GO:1905627: regulation of serotonin biosynthetic process.	 Other,  Tolerance and resistance - Stress tolerance						GO:0009408 - response to heat, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0030187 - melatonin biosynthetic process, GO:0042427 - serotonin biosynthetic process, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000276 - drought tolerance, TO:0000075 - light sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
12805	MIR1847	miR1847, osa-miR1847, osa-MIR1847	MICRORNA1847	MICRORNA1847, osa-miRNA1847	_		1	miRBASE accession: MI0008224. predicted target(s): LRR-protein kinase. Predicted target(s): Os09g0556200, Os11g0460500.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12806	MIR1848	miR1848, osa-miR1848, osa-MIR1848	MICRORNA1848	MICRORNA1848, osa-miRNA1848	_		4	miRBASE accession: MI0008225. Predicted target(s): Os04g0481900, Os02g0569900, Os08g0207600, Os12g0281600, Os06g0663600, Os11g0249400, Os01g0611200, Os02g0569400, Os06g0238900, Os06g0305400, Os07g0584200, Os10g0562200. predicted targets: Multiple OsDUF506s.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Yield and productivity						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009651 - response to salt stress, GO:0010025 - wax biosynthetic process, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0009737 - response to abscisic acid stimulus, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000207 - plant height, TO:0000206 - leaf angle, TO:0006031 - inflorescence size, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000053 - pollen sterility, TO:0006001 - salt tolerance, TO:0000445 - seed number, TO:0000391 - seed size	
12807	MIR1849	miR1849, osa-miR1849, osa-MIR1849	MICRORNA1849	MICRORNA1849, osa-miRNA1849	_		4	miRBASE accession: MI0008226.LM381012	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12808	MIR1850	miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.2, osa-miR1850.3	MICRORNA1850	MICRORNA1850, osa-miRNA1850	_		5	miRBASE accession: MI0008227. EU563917, EU563918. LM381013, LM381146. Predicted target(s): AK068321, Os06g0484400, Os04g0410300, Os09g0467200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000303 - cold tolerance	
12809	MIR1851	miR1851, osa-miR1851, osa-MIR1851	MICRORNA1851	MICRORNA1851, osa-miRNA1851	_		5	miRBASE accession: MI0008228. Predicted target(s): LOC_Os01g61520.LM381014	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12810	MIR1852	miR1852, osa-miR1852, osa-MIR1852	MICRORNA1852	MICRORNA1852, osa-miRNA1852	_		5	miRBASE accession: MI0008229.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12811	MIR1853	miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p	MICRORNA1853	MICRORNA1853, osa-miRNA1853	_		8	miRBASE accession: MI0008230. Predicted target(s): Os02g0596900, Os09g0433600.LM381015	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12812	MIR1854	miR1854, osa-miR1854, osa-MIR1854	MICRORNA1854	MICRORNA1854, osa-miRNA1854	_		8	miRBASE accession: MI0008231. Predicted target(s): Os12g0576750.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12813	MIR1855	miR1855, osa-miR1855, osa-MIR1855	MICRORNA1855	MICRORNA1855, osa-miRNA1855	_		11	miRBASE accession: MI0008232. Predicted target(s): Os03g0622300, Os05g0176100, Os01g0654500.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12814	MIR1856	miR1856, osa-miR1856, osa-MIR1856	MICRORNA1856	MICRORNA1856, osa-miRNA1856	_		11	miRBASE accession: MI0008233.LM381016	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12815	MIR1857	miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p	MICRORNA1857	MICRORNA1857, osa-miRNA1857	_		11	miRBASE accession: MI0008234.LM381018 LM381017	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12816	MIR1858A	miR1858a, osa-miR1858a, osa-MIR1858a	MICRORNA1858A	MICRORNA1858a, osa-miRNA1858a	_		9	miRBASE accession: MI0008240. Predicted target(s): Os01g0740500, Os01g0743300, Os04g0419550, Os07g0442000, Os04g0439400, Os01g0319200, Os01g0321700, Os03g0307100, Os06g0558300, Os02g0308800, Os02g0775600, Os06g0247500, Os08g0326600.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12817	MIR1858B	miR1858b, osa-miR1858b, osa-MIR1858b	MICRORNA1858B	MICRORNA1858b, osa-miRNA1858b	_		9	miRBASE accession: MI0008241. Predicted target(s): Os01g0740500, Os01g0743300, Os04g0419550, Os07g0442000, Os04g0439400, Os01g0319200, Os01g0321700, Os03g0307100, Os06g0558300, Os02g0308800, Os02g0775600, Os06g0247500, Os08g0326600.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12818	MIR1859	miR1859, osa-miR1859, osa-MIR1859	MICRORNA1859	MICRORNA1859, osa-miRNA1859	_		1	miRBASE accession: MI0008244. Predicted target(s): Os07g0492000.LM381022	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12819	MIR1860	miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p	MICRORNA1860	MICRORNA1860, osa-miRNA1860	_		1	miRBASE accession: MI0008245. Predicted target(s): Os11g0593500, Os09g0530700. LM381024. LM381023. predicted target: Os03g0738400.	 Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
12820	MIR1861A	miR1861a, osa-miR1861a, osa-MIR1861a	MICRORNA1861A	MICRORNA1861a, osa-miRNA1861a	_		1	miRBASE accession: MI0008247.LM381025	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12821	MIR1861A2	miR1861a2, osa-miR1861a2, osa-MIR1861a2	MICRORNA1861A2	MICRORNA1861a2, osa-miRNA1861a2	_				 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12822	MIR1861B	miR1861b, osa-miR1861b, osa-MIR1861b	MICRORNA1861B	MICRORNA1861b, osa-miRNA1861b	_		2	miRBASE accession: MI0008248. Predicted target(s): Os05g0596600.LM381026	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12823	MIR1861C	miR1861c, osa-miR1861c, osa-MIR1861c	MICRORNA1861C	MICRORNA1861c, osa-miRNA1861c	_		2	miRBASE accession: MI0008249.LM381027	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12824	MIR1861D	miR1861d, osa-miR1861d, osa-MIR1861d	MICRORNA1861D	MICRORNA1861d, osa-miRNA1861d	_		4	miRBASE accession: MI0008250.LM381028	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12825	MIR1861E	miR1861e, osa-miR1861e, osa-MIR1861e	MICRORNA1861E	MICRORNA1861e, osa-miRNA1861e	_		4	miRBASE accession: MI0008251.LM381029	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12826	MIR1861F	miR1861f, osa-miR1861f, osa-MIR1861f	MICRORNA1861F	MICRORNA1861f, osa-miRNA1861f	_		5	miRBASE accession: MI0008252. Predicted target(s): Os05g0596600.LM381030	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12827	MIR1861G	miR1861g, osa-miR1861g, osa-MIR1861g	MICRORNA1861G	MICRORNA1861g, osa-miRNA1861g	_		5	miRBASE accession: MI0008253.LM381031	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12828	MIR1861H	miR1861h, osa-miR1861h, osa-MIR1861h	MICRORNA1861H	MICRORNA1861h, osa-miRNA1861h	_		6	miRBASE accession: MI0008254. Predicted target(s): Os05g0596600.LM381032	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12829	MIR1861I	miR1861i, osa-miR1861i, osa-MIR1861i	MICRORNA1861I	MICRORNA1861i, osa-miRNA1861i	_		6	miRBASE accession: MI0008255. Predicted target(s): Os05g0596600.LM381033	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12830	MIR1861J	miR1861j, osa-miR1861j, osa-MIR1861j	MICRORNA1861J	MICRORNA1861j, osa-miRNA1861j	_		8	miRBASE accession: MI0008256. Predicted target(s): Os05g0596600.LM381034	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12831	MIR1861K	miR1861k, osa-miR1861k, osa-MIR1861k	MICRORNA1861K	MICRORNA1861k, osa-miRNA1861k	_		8	miRBASE accession: MI0008257.LM381035	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12832	MIR1861L	miR1861l, osa-miR1861l, osa-MIR1861l	MICRORNA1861L	MICRORNA1861l, osa-miRNA1861l	_		9	miRBASE accession: MI0008258. Predicted target(s): Os05g0596600.LM381036	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12833	MIR1861M	miR1861m, osa-miR1861m, osa-MIR1861m	MICRORNA1861M	MICRORNA1861m, osa-miRNA1861m	_		9	miRBASE accession: MI0008259.LM381037	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12834	MIR1861N	miR1861n, osa-miR1861n, osa-MIR1861n	MICRORNA1861N	MICRORNA1861n, osa-miRNA1861n	_		12	miRBASE accession: MI0008260. Predicted target(s): Os03g0129200.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12835	MIR1862A	miR1862a, osa-miR1862a, osa-MIR1862a	MICRORNA1862A	MICRORNA1862a, osa-miRNA1862a	_		1	miRBASE accession: MI0008261. Predicted target(s): Os01g0794800/Os01g0795000 (LOC_Os01g58240).LM381038	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12836	MIR1862B	miR1862b, osa-miR1862b, osa-MIR1862b	MICRORNA1862B	MICRORNA1862b, osa-miRNA1862b	_		8	miRBASE accession: MI0008262. Predicted target(s): Os01g0794800/Os01g0795000 (LOC_Os01g58240).LM381039	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12837	MIR1862C	miR1862c, osa-miR1862c, osa-MIR1862c	MICRORNA1862C	MICRORNA1862c, osa-miRNA1862c	_		10	miRBASE accession: MI0008263. Predicted target(s): Os01g0794800/Os01g0795000 (LOC_Os01g58240).LM381040	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12838	MIR1862D	miR1862d, osa-miR1862d, osa-MIR1862d	MICRORNA1862D	MICRORNA1862d, osa-miRNA1862d	_		10	miRBASE accession: MI0008279. Predicted target(s): Os02g0511500, Os01g0794800/Os01g0795000 (LOC_Os01g58240). HM139627-HM139675 (O. sativa, O. rufipogon, O. barthii).LM381054	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
12839	MIR1862E	miR1862e, osa-miR1862e, osa-MIR1862e	MICRORNA1862E	MICRORNA1862e, osa-miRNA1862e	_		11	miRBASE accession: MI0008282. Predicted target(s): Os04g0380300, Os02g0511500.LM381056	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12840	MIR1863	miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a	MICRORNA1863	MICRORNA1863, osa-miRNA1863, osa-miRNA1863a	_		2	miRBASE accession: MI0008264. LM381041.	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease	
12841	MIR1864	miR1864, osa-miR1864, osa-MIR1864	MICRORNA1864	MICRORNA1864, osa-miRNA1864	_		2	miRBASE accession: MI0008265.LM381042	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12842	MIR1865	miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p	MICRORNA1865	MICRORNA1865, osa-miRNA1865	_		3	miRBASE accession: MI0008266.LM381044 LM381043	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12843	MIR1866	miR1866, osa-miR1866, osa-MIR1866, Osa-miR1866-5p, Osa-miR1866-3p	MICRORNA1866	MICRORNA1866, osa-miRNA1866	_		3	miRBASE accession: MI0008267. the target genes of osa-miR1866-3p: LOC_Os09g21110 and LOC_Os02g44360. PO:0030104: caryopsis fruit.	 Other,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000429 - salt sensitivity, TO:0000266 - chalky endosperm	
12844	MIR1868	miR1868, osa-miR1868, osa-MIR1868	MICRORNA1868	MICRORNA1868, osa-miRNA1868	_		4	miRBASE accession: MI0008270.LM381045	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12845	MIR1869	miR1869, osa-miR1869, osa-MIR1869	MICRORNA1869	MICRORNA1869, osa-miRNA1869	_		4	miRBASE accession: MI0008272.LM381047	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12846	MIR1867	miR1867, osa-miR1867, osa-MIR1867	MICRORNA1867	MICRORNA1867, osa-miRNA1867	_			miRBASE accession: MI0008268 (Dead miRNA entry: The pattern of deep sequencing reads derived from the MIR1867 locus is not consistent with miRNA processing. The sequence is removed from miRBase 20. ). Predicted target(s): Os03g0411600. HM139676-HM139732 (O. sativa, O. rufipogon, O. barthii).	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12847	MIR1870	miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p	MICRORNA1870	MICRORNA1870, osa-miRNA1870	_		6	miRBASE accession: MI0008273.LM381777 LM381048	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12848	MIR1871	miR1871, osa-miR1871, osa-MIR1871	MICRORNA1871	MICRORNA1871, osa-miRNA1871	_		6	miRBASE accession: MI0008274. predicted target(s): glutaredoxin. LM381049. GO:0140426: PAMP-triggered immunity signalling pathway. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Reproductive organ - panicle,  Other,  Tolerance and resistance - Stress tolerance						GO:0050832 - defense response to fungus, GO:0002679 - respiratory burst during defense response, GO:0009414 - response to water deprivation, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000590 - grain weight, TO:0000346 - tiller number, TO:0002759 - grain number, TO:0000605 - hydrogen peroxide content, TO:0000455 - seed set percent, TO:0000074 - blast disease, TO:0000152 - panicle number, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000371 - yield trait, TO:0000276 - drought tolerance, TO:0000449 - grain yield per plant	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020142 - stem internode 
12849	MIR1872	miR1872, osa-miR1872, osa-MIR1872	MICRORNA1872	MICRORNA1872, osa-miRNA1872	_		6	miRBASE accession: MI0008275. Predicted target(s): LOC_Os12g14230, Os06g0683000.LM381050	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12850	MIR1873	miR1873, osa-miR1873, osa-MIR1873	MICRORNA1873	MICRORNA1873, osa-miRNA1873	_		7	miRBASE accession: MI0008276. LM381051. Target genes: LOC_Os05g01790 and LOC_Os08g29660.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0006379 - mRNA cleavage	TO:0000074 - blast disease, TO:0000371 - yield trait	
12851	MIR1875	miR1875, osa-miR1875, osa-MIR1875	MICRORNA1875	MICRORNA1875, osa-miRNA1875	_		9	miRBASE accession: MI0008278.LM381053	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12852	MIR1876	miR1876, osa-miR1876, osa-MIR1876	MICRORNA1876	MICRORNA1876, osa-miRNA1876	_		10	miRBASE accession: MI0008280. Predicted target(s): Os01g0188900.LM381055	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12853	MIR1877	miR1877, osa-miR1877, osa-MIR1877	MICRORNA1877	MICRORNA1877, osa-miRNA1877	_		9	miRBASE accession: MI0008283.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000303 - cold tolerance	
12854	MIR1878	miR1878, osa-miR1878, osa-MIR1878	MICRORNA1878	MICRORNA1878, osa-miRNA1878	_		9	miRBASE accession: MI0008284.LM381057	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12855	MIR1879	miR1879, osa-miR1879, osa-MIR1879	MICRORNA1879	MICRORNA1879, osa-miRNA1879	_		10	miRBASE accession: MI0008285.LM381058	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12856	MIR1880	miR1880, osa-miR1880, osa-MIR1880	MICRORNA1880	MICRORNA1880, osa-miRNA1880	_		11	miRBASE accession: MI0008286.LM381059	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12857	MIR1881	miR1881, osa-miR1881, osa-MIR1881	MICRORNA1881	MICRORNA1881, osa-miRNA1881	_		12	miRBASE accession: MI0008287.LM381060	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12858	MIR1882A	miR1882a, osa-miR1882a, osa-MIR1882a	MICRORNA1882A	MICRORNA1882a, osa-miRNA1882a	_		3	miRBASE accession: MI0008288. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100(OsCSLA3). 	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12859	MIR1882B	miR1882b, osa-miR1882b, osa-MIR1882b	MICRORNA1882B	MICRORNA1882b, osa-miRNA1882b	_			miRBASE accession: MI0008289. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100(OsCSLA3). 	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12860	MIR1882C	miR1882c, osa-miR1882c, osa-MIR1882c	MICRORNA1882C	MICRORNA1882c, osa-miRNA1882c	_		7	miRBASE accession: MI0008290. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100 (OsCSLA3). 	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12861	MIR1882D	miR1882d, osa-miR1882d, osa-MIR1882d	MICRORNA1882D	MICRORNA1882d, osa-miRNA1882d	_		8	miRBASE accession: MI0008291. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100 (OsCSLA3). 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12862	MIR1882E	miR1882e, osa-miR1882e, osa-MIR1882e, osa-miR1882e-5p	MICRORNA1882E	MICRORNA1882e, osa-miRNA1882e	_		10	miRBASE accession: MI0008292. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100 (OsCSLA3). TO:0020093: nitrogen content. 	 Tolerance and resistance - Disease resistance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease	
12863	MIR1882F	miR1882f, osa-miR1882f, osa-MIR1882f	MICRORNA1882F	MICRORNA1882f, osa-miRNA1882f	_		11	miRBASE accession: MI0008293. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100 (OsCSLA3). 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12864	MIR1882G	miR1882g, osa-miR1882g, osa-MIR1882g	MICRORNA1882G	MICRORNA1882g, osa-miRNA1882g	_		11	miRBASE accession: MI0008294. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100 (OsCSLA3). 	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12865	MIR1882H	miR1882h, osa-miR1882h, osa-MIR1882h	MICRORNA1882H	MICRORNA1882h, osa-miRNA1882h	_		12	miRBASE accession: MI0008295. target gene(s): MSTRG.24461.2, Os03g0170200, Os06g0230100 (OsCSLA3). 	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12866	MIR1883A	miR1883a, osa-miR1883a, osa-MIR1883a	MICRORNA1883A	MICRORNA1883a, osa-miRNA1883a	_		11	miRBASE accession: MI0008300. Predicted target(s): LOC_Os12g15260.LM381065	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12867	MIR1883B	miR1883b, osa-miR1883b, osa-MIR1883b	MICRORNA1883B	MICRORNA1883b, osa-miRNA1883b	_		11	miRBASE accession: MI0008301. Predicted target(s): LOC_Os12g15260.LM381066	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12868	MIR1884A	miR1884a, osa-miR1884a, osa-MIR1884a	MICRORNA1884A	MICRORNA1884a, osa-miRNA1884a	_			miRBASE accession: MI0008246 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR1884 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).).	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12869	MIR1884B	miR1884b, osa-miR1884b, osa-MIR1884b	MICRORNA1884B	MICRORNA1884b, osa-miRNA1884b	_			miRBASE accession: MI0008281 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR1884 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547).). predicted target(s): cytochrome P450.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12870	MIR2090	miR2090, osa-miR2090, osa-MIR2090	MICRORNA2090	MICRORNA2090, osa-miRNA2090	_		1	miRBASE accession: MI0010550.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12871	MIR2091	miR2091, osa-miR2091, osa-MIR2091, Osa-MIR2091-5p	MICRORNA2091	MICRORNA2091, osa-miRNA2091	_		12	miRBASE accession: MI0010551. the predicted target genes: Os01g0957900.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0009414 - response to water deprivation, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000276 - drought tolerance	
12872	MIR2092	miR2092, osa-miR2092, osa-MIR2092	MICRORNA2092	MICRORNA2092, osa-miRNA2092	_		12	miRBASE accession: MI0010552.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12873	MIR2093	miR2093, osa-miR2093, osa-MIR2093osa-miR2093-5p	MICRORNA2093	MICRORNA2093, osa-miRNA2093	_		5	miRBASE accession: MI0010553.LM381196	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12874	MIR2094	miR2094, osa-miR2094, osa-MIR2094	MICRORNA2094	MICRORNA2094, osa-miRNA2094	_		2	miRBASE accession: MI0010554.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12875	MIR2095	miR2095, osa-miR2095, osa-MIR2095	MICRORNA2095	MICRORNA2095, osa-miRNA2095	_		10	miRBASE accession: MI0010555.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12876	MIR2096	miR2096, osa-miR2096, osa-MIR2096osa-miR2096-3p osa-miR2096-5p	MICRORNA2096	MICRORNA2096, osa-miRNA2096	_		1	miRBASE accession: MI0010556.LM381198 LM381197	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12877	MIR2097	miR2097, osa-miR2097, osa-MIR2097osa-miR2097-5p	MICRORNA2097	MICRORNA2097, osa-miRNA2097	_		1	miRBASE accession: MI0010557.LM381199	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12878	MIR2098	miR2098, osa-miR2098, osa-MIR2098	MICRORNA2098	MICRORNA2098, osa-miRNA2098	_		10	miRBASE accession: MI0010558.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12879	MIR2099	miR2099, osa-miR2099, osa-MIR2099	MICRORNA2099	MICRORNA2099, osa-miRNA2099	_		1	miRBASE accession: MI0010559.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12880	MIR2100	miR2100, osa-miR2100, osa-MIR2100	MICRORNA2100	MICRORNA2100, osa-miRNA2100	_		11	miRBASE accession: MI0010560. target gene: RZnF (LOC_Os03g31320).	 Other,  Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex	TO:0000074 - blast disease	
12881	MIR2101	miR2101, osa-miR2101, osa-MIR2101	MICRORNA2101	MICRORNA2101, osa-miRNA2101	_		12	miRBASE accession: MI0010561.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12882	MIR2102	miR2102, osa-miR2102, osa-MIR2102	MICRORNA2102	MICRORNA2102, osa-miRNA2102	_		5	miRBASE accession: MI0010562.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12883	MIR2103	miR2103, osa-miR2103, osa-MIR2103	MICRORNA2103	MICRORNA2103, osa-miRNA2103	_		12	miRBASE accession: MI0010564.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12884	MIR2104	miR2104, osa-miR2104, osa-MIR2104	MICRORNA2104	MICRORNA2104, osa-miRNA2104	_		11	miRBASE accession: MI0010565.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12885	MIR2105	miR2105, osa-miR2105, osa-MIR2105	MICRORNA2105	MICRORNA2105, osa-miRNA2105	_		12	miRBASE accession: MI0010566.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12886	MIR2106	miR2106, osa-miR2106, osa-MIR2106	MICRORNA2106	MICRORNA2106, osa-miRNA2106	_		2	miRBASE accession: MI0010567.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12887	MIR2118A	miR2118a, osa-miR2118a, osa-MIR2118a	MICRORNA2118A	MICRORNA2118a, osa-miRNA2118a	_		4	miRBASE accession: MI0011251.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12888	MIR2118B	miR2118b, osa-miR2118b, osa-MIR2118b	MICRORNA2118B	MICRORNA2118b, osa-miRNA2118b	_		4	miRBASE accession: MI0011252.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other,  Reproductive organ - Spikelet, flower, glume, awn						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0048653 - anther development, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage	TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0001004 - anther development stage 
12889	MIR2118C	miR2118c, osa-miR2118c, osa-MIR2118c	MICRORNA2118C	MICRORNA2118c, osa-miRNA2118c	_		4	miRBASE accession: MI0011253.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0035195 - gene silencing by miRNA, GO:0048653 - anther development, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0001004 - anther development stage 
12890	MIR2118D	miR2118d, osa-miR2118d, osa-MIR2118d	MICRORNA2118D	MICRORNA2118d, osa-miRNA2118d	_		4	miRBASE accession: MI0011254.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility						GO:0035195 - gene silencing by miRNA, GO:0048653 - anther development, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0001004 - anther development stage 
12891	MIR2118E	miR2118e, osa-miR2118e, osa-MIR2118e	MICRORNA2118E	MICRORNA2118e, osa-miRNA2118e	_		4	miRBASE accession: MI0011255.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Spikelet, flower, glume, awn						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0048653 - anther development, GO:0035068 - micro-ribonucleoprotein complex	TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0001004 - anther development stage 
12892	MIR2118F	miR2118f, osa-miR2118f, osa-MIR2118f	MICRORNA2118F	MICRORNA2118f, osa-miRNA2118f	_		4	miRBASE accession: MI0011256.	 Reproductive organ - Inflorescence,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0009908 - flower development, GO:0048232 - male gamete generation, GO:0048653 - anther development, GO:0035195 - gene silencing by miRNA, GO:0010229 - inflorescence development, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000437 - male sterility, TO:0000622 - flower development trait, TO:0000358 - female sterility, TO:0000621 - inflorescence development trait	PO:0025277 - pollen sac , PO:0005679 - epidermis , PO:0001083 - inflorescence development stage , PO:0006327 - spikelet meristem , PO:0007615 - flower development stage , PO:0009029 - stamen , PO:0001004 - anther development stage , PO:0005051 - hypodermis 
12893	MIR2118G	miR2118g, osa-miR2118g, osa-MIR2118g	MICRORNA2118G	MICRORNA2118g, osa-miRNA2118g	_		4	miRBASE accession: MI0011257.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0048653 - anther development, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex	TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0001004 - anther development stage 
12894	MIR2118H	miR2118h, osa-miR2118h, osa-MIR2118h	MICRORNA2118H	MICRORNA2118h, osa-miRNA2118h	_		4	miRBASE accession: MI0011258.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Reproductive organ - Pollination, fertilization, fertility - Female sterility						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0048653 - anther development, GO:0035195 - gene silencing by miRNA	TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0001004 - anther development stage 
12895	MIR2118I	miR2118i, osa-miR2118i, osa-MIR2118i	MICRORNA2118I	MICRORNA2118i, osa-miRNA2118i	_		4	miRBASE accession: MI0011259.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other,  Reproductive organ - Pollination, fertilization, fertility - Female sterility						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0048653 - anther development, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex	TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0001004 - anther development stage 
12896	MIR2118J	miR2118j, osa-miR2118j, osa-MIR2118j	MICRORNA2118J	MICRORNA2118j, osa-miRNA2118j	_		4	miRBASE accession: MI0011260.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0048653 - anther development, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex	TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0001004 - anther development stage 
12897	MIR2118K	miR2118k, osa-miR2118k, osa-MIR2118k	MICRORNA2118K	MICRORNA2118k, osa-miRNA2118k	_		4	miRBASE accession: MI0011261.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0048653 - anther development	TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0001004 - anther development stage 
12898	MIR2118L	miR2118l, osa-miR2118l, osa-MIR2118l	MICRORNA2118L	MICRORNA2118l, osa-miRNA2118l	_		4	miRBASE accession: MI0011262.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0048653 - anther development, GO:0035195 - gene silencing by miRNA	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000074 - blast disease	PO:0001004 - anther development stage 
12899	MIR2118M	miR2118m, osa-miR2118m, osa-MIR2118m	MICRORNA2118M	MICRORNA2118m, osa-miRNA2118m	_		4	miRBASE accession: MI0011263.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Other						GO:0048653 - anther development, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0001004 - anther development stage 
12900	MIR2118N	miR2118n, osa-miR2118n, osa-MIR2118n	MICRORNA2118N	MICRORNA2118n, osa-miRNA2118n	_		4	miRBASE accession: MI0011264.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0048653 - anther development	TO:0000437 - male sterility, TO:0000358 - female sterility	PO:0001004 - anther development stage 
12901	MIR2118O	miR2118o, osa-miR2118o, osa-MIR2118o	MICRORNA2118O	MICRORNA2118o, osa-miRNA2118o	_		4	miRBASE accession: MI0011265. LM381268. 	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0048653 - anther development	TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000074 - blast disease	PO:0001004 - anther development stage 
12902	MIR2118P	miR2118p, osa-miR2118p, osa-MIR2118p	MICRORNA2118P	MICRORNA2118p, osa-miRNA2118p	_		11	miRBASE accession: MI0011266.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12903	MIR2118Q	miR2118q, osa-miR2118q, osa-MIR2118q	MICRORNA2118Q	MICRORNA2118q, osa-miRNA2118q	_		11	miRBASE accession: MI0011267.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12904	MIR2118R	miR2118r, osa-miR2118r, osa-MIR2118r	MICRORNA2118R	MICRORNA2118r, osa-miRNA2118r	_		11	miRBASE accession: MI0011268.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12905	MIR2120	miR2120, osa-miR2120, osa-MIR2120	MICRORNA2120	MICRORNA2120, osa-miRNA2120	_		11	miRBASE accession: MI0010708.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12906	MIR2121B	miR2121b, osa-miR2121b, osa-MIR2121b	MICRORNA2121B	MICRORNA2121b, osa-miRNA2121b	_		4	miRBASE accession: MI0010710.LM381227	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12907	MIR2122	miR2122, osa-miR2122, osa-MIR2122	MICRORNA2122	MICRORNA2122, osa-miRNA2122	_		2	miRBASE accession: MI0010711.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12908	MIR2123a	miR2123a, osa-miR213a, osa-MIR2123a	MICRORNA2123A	MICRORNA2123a, osa-miRNA2123a	_			miRBASE accession: MI0010712 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12909	MIR2123b	miR2123b, osa-miR213b, osa-MIR2123b	MICRORNA2123B	MICRORNA2123b, osa-miRNA2123b	_			miRBASE accession: MI0010713 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12910	MIR2123C	miR2123c, osa-miR213c, osa-MIR2123c	MICRORNA2123C	MICRORNA2123c, osa-miRNA2123c	_			miRBASE accession: MI0010714 (Dead miRNA entry: The pattern of reads that map to the MIR806/MIR2123 loci from deep sequencing experiments is more consistent with rasiRNA rather than miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12911	MIR2124A	miR2124a, osa-miR214a, osa-MIR2124a	MICRORNA2124A	MICRORNA2124a, osa-miRNA2124a	_			miRBASE accession: MI0010715 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12912	MIR2124C	miR2124c, osa-miR214c, osa-MIR2124c	MICRORNA2124C	MICRORNA2124c, osa-miRNA2124c	_			miRBASE accession: MI0010717 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12913	MIR2124D	miR2124d, osa-miR214d, osa-MIR2124d	MICRORNA2124D	MICRORNA2124d, osa-miRNA2124d	_			miRBASE accession: MI0010718 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12914	MIR2124E	miR2124e, osa-miR214e, osa-MIR2124e	MICRORNA2124E	MICRORNA2124e, osa-miRNA2124e	_			miRBASE accession: MI0010719 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12915	MIR2124F	miR2124f, osa-miR214f, osa-MIR2124f	MICRORNA2124F	MICRORNA2124f, osa-miRNA2124f	_			miRBASE accession: MI0010720 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12916	MIR2124G	miR2124g, osa-miR214g, osa-MIR2124g	MICRORNA2124G	MICRORNA2124g, osa-miRNA2124g	_			miRBASE accession: MI0010721 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12917	MIR2124H	miR2124h, osa-miR214h, osa-MIR2124h	MICRORNA2124H	MICRORNA2124h, osa-miRNA2124h	_			miRBASE accession: MI0010724 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12918	MIR2124I	miR2124i, osa-miR214i, osa-MIR2124i	MICRORNA2124I	MICRORNA2124i, osa-miRNA2124i	_			miRBASE accession: MI0010722 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12919	MIR2125	miR2125, osa-miR215, osa-MIR2125	MICRORNA2125	MICRORNA2125, osa-miRNA2125	_			miRBASE accession: MI0010723 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12920	MIR2275A	miR2275a, osa-miR2275a, osa-MIR2275a	MICRORNA2275A	MICRORNA2275a, osa-miRNA2275a	_		8	miRBASE accession: MI0011269.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12921	MIR2275B	miR2275b, osa-miR2275b, osa-MIR2275b	MICRORNA2275B	MICRORNA2275b, osa-miRNA2275b	_		8	miRBASE accession: MI0011270. Target: OsFBA (Os05g0402700).	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12922	MIR2124B	miR2124b, osa-miR214b, osa-MIR2124b	MICRORNA2124B	MICRORNA2124b, osa-miRNA2124b	_			miRBASE accession: MI0010716 (Dead miRNA entry: The pattern of reads that map to the MIR2124 locus from deep sequencing experiments is not consistent with miRNA processing. The miRNA annotation is therefore likely to be incorrect (Chen et al., RNA Biol. 8:538-547). )	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12923	MIR1319B	miR1319b, osa-miR1319b, osa-MIR1319b	MICRORNA1319B	MICRORNA1319b, osa-miRNA1319b	_		3	miRBASE accession: MI0019843.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12924	MIR2275D	miR2275d, osa-miR2275d, osa-MIR2275d	MICRORNA2275D	MICRORNA2275d, osa-miRNA2275d	_		8	miRBASE accession: MI0019043. predicted target(s): Mitochondrial ATP synthase.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000303 - cold tolerance	
12925	MIR2863C	miR2863c, osa-miR2863c, osa-MIR2863c	MICRORNA2863C	MICRORNA2863c, osa-miRNA2863c	_		2	miRBASE accession: MI0018060.LM382893	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12926	MIR2873C	miR2873c, osa-miR2873c, osa-MIR2873c	MICRORNA2873C	MICRORNA2873c, osa-miRNA2873c	_		7	miRBASE accession: MI0019856. predicted target(s): dnaJ domain protein.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12927	MIR3979	miR3979, osa-miR3979, osa-MIR3979osa-miR3979-3p osa-miR3979-5p	MICRORNA3979	MICRORNA3979, osa-miRNA3979	_		11	miRBASE accession: MI0017251. predicted target(s): phphoribyltransferase. Under nitrogen starvation conditions, miR3979 was downregulated in roots. LM382520, LM382519. the predicted target genes: Os01g0948500, Os01g0893400.	 Tolerance and resistance - Stress tolerance,  Other						GO:0006379 - mRNA cleavage, GO:0009414 - response to water deprivation, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000276 - drought tolerance	
12928	MIR5143A	miR5143a, osa-miR5143a, osa-MIR5143a	MICRORNA5143A	MICRORNA5143a, osa-miRNA5143a	_		1	miRBASE accession: MI0018055. predicted target(s): phphoinitide 5-phphatase.LM382887	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12929	MIR5147	miR5147, osa-miR5147, osa-MIR5147	MICRORNA5147	MICRORNA5147, osa-miRNA5147	_		2	miRBASE accession: MI0018059. predicted target(s): oligopeptidase.LM382892	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12930	MIR5150	miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p	MICRORNA5150	MICRORNA5150, osa-miRNA5150	_		4	miRBASE accession: MI0018065. LM382899, LM382898. GO:1901698: response to nitrogen compound. TO:0020093: nitrogen content. PO:0030104: caryopsis fruit.	 Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0009408 - response to heat	TO:0000011 - nitrogen sensitivity, TO:0000259 - heat tolerance, TO:0000266 - chalky endosperm	
12931	MIR5152	miR5152, osa-miR5152, osa-MIR5152	MICRORNA5152	MICRORNA5152, osa-miRNA5152	_		5	miRBASE accession: MI0018067.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12932	MIR5179	miR5179, osa-miR5179, osa-MIR5179	MICRORNA5179	MICRORNA5179, osa-miRNA5179	_		2	miRBASE accession: MI0019851. predicted target(s): MADS-box transcription factor.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12933	MIR5485	miR5485, osa-miR5485, osa-MIR5485	MICRORNA5485	MICRORNA5485, osa-miRNA5485	_		3	miRBASE accession: MI0019003. predicted target(s): Calle synthase.LM382917	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12934	MIR5488	miR5488, osa-miR5488, osa-MIR5488, OsmiR5488	MICRORNA5488	MICRORNA5488, osa-miRNA5488, OsmiRNA5488	_		12	miRBASE accession: MI0019006. target gene(s): Os12g0613700 (OsARF25). 	 Other,  Vegetative organ - Root,  Seed						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0009733 - response to auxin stimulus, GO:0009553 - embryo sac development, GO:0006379 - mRNA cleavage	TO:0002672 - auxin content, TO:0000455 - seed set percent, TO:0000163 - auxin sensitivity, TO:0000227 - root length	PO:0009005 - root , PO:0025281 - pollen 
12935	MIR5491	miR5491, osa-miR5491, osa-MIR5491	MICRORNA5491	MICRORNA5491, osa-miRNA5491	_		9	miRBASE accession: MI0019009. predicted target(s): LRR-protein kinase.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12936	MIR5508	miR5508, osa-miR5508, osa-MIR5508	MICRORNA5508	MICRORNA5508, osa-miRNA5508	_		6	miRBASE accession: MI0019026. predicted target(s): cytochrome P450.LM382925	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12937	MIR5513	miR5513, osa-miR5513, osa-MIR5513	MICRORNA5513	MICRORNA5513, osa-miRNA5513	_		3	miRBASE accession: MI0019031. predicted target(s): ATP binding protein.LM382927	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12938	MIR5516A	miR5516a, osa-miR5516a, osa-MIR5516a	MICRORNA5516A	MICRORNA5516a, osa-miRNA5516a	_		5	miRBASE accession: MI0019035.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12939	MIR5516B	miR5516b, osa-miR5516b, osa-MIR5516b	MICRORNA5516B	MICRORNA5516b, osa-miRNA5516b	_		5	miRBASE accession: MI0019859.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12940	MIR5519	miR5519, osa-miR5519, osa-MIR5519	MICRORNA5519	MICRORNA5519, osa-miRNA5519	_		12	miRBASE accession: MI0019038. predicted target(s): zinc finger B-box protein.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12941	MIR5788	miR5788, osa-miR5788, osa-MIR5788, NolmiR-3	MICRORNA5788	MICRORNA5788, osa-miRNA5788	_		3	miRBASE accession: MI0019798. predicted target(s): LTP family protein, SET domain. target: LOC_Os12g02330 (non-specific lipid-transfer protein, nsLTP). The target (nsLTP) was negatively regulated by NolmiR-3, indicating that the NolmiR-3 may play an important role in development and defense in plants (Yang et al. 2014).	 Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0009414 - response to water deprivation, GO:0019722 - calcium-mediated signaling, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex	TO:0000276 - drought tolerance	
12942	MIR5789	miR5789, osa-miR5789, osa-MIR5789	MICRORNA5789	MICRORNA5789, osa-miRNA5789	_		6	miRBASE accession: MI0019801.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12943	MIR5791	miR5791, osa-miR5791, osa-MIR5791	MICRORNA5791	MICRORNA5791, osa-miRNA5791	_		12	miRBASE accession: MI0019803.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12944	MIR5792	miR5792, osa-miR5792, osa-MIR5792	MICRORNA5792	MICRORNA5792, osa-miRNA5792	_		10	miRBASE accession: MI0019804. predicted target(s): SAC domain protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12945	MIR5793	miR5793, osa-miR5793, osa-MIR5793	MICRORNA5793	MICRORNA5793, osa-miRNA5793	_		11	miRBASE accession: MI0019805.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12946	MIR5794	miR5794, osa-miR5794, osa-MIR5794	MICRORNA5794	MICRORNA5794, osa-miRNA5794	_			miRBASE accession: MI0019806. predicted target(s): F-box.	 Other,  Tolerance and resistance - Disease resistance						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
12947	MIR5795	miR5795, osa-miR5795, osa-MIR5795	MICRORNA5795	MICRORNA5795, osa-miRNA5795	_		9	miRBASE accession: MI0019808. predicted target(s): Integral membrane protein DUF6.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
12948	MIR5796	miR5796, osa-miR5796, osa-MIR5796	MICRORNA5796	MICRORNA5796, osa-miRNA5796	_		8	miRBASE accession: MI0019809. predicted target(s): agenet domain protein.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12949	MIR5797	miR5797, osa-miR5797, osa-MIR5797	MICRORNA5797	MICRORNA5797, osa-miRNA5797	_		8	miRBASE accession: MI0019810.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12950	MIR5798	miR5798, osa-miR5798, osa-MIR5798	MICRORNA5798	MICRORNA5798, osa-miRNA5798	_		7	miRBASE accession: MI0019811.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12951	MIR5799	miR5799, osa-miR5799, osa-MIR5799	MICRORNA5799	MICRORNA5799, osa-miRNA5799	_		6	miRBASE accession: MI0019813.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12952	MIR5800	miR5800, osa-miR5800, osa-MIR5800	MICRORNA5800	MICRORNA5800, osa-miRNA5800	_		11	miRBASE accession: MI0019814.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12953	MIR5801	miR5801, osa-miR5801, osa-MIR5801	MICRORNA5801	MICRORNA5801, osa-miRNA5801	_		12	miRBASE accession: MI0019815. predicted target(s): aspartic proteinase nepenthesin-2.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12954	MIR5802	miR5802, osa-miR5802, osa-MIR5802	MICRORNA5802	MICRORNA5802, osa-miRNA5802	_		1	miRBASE accession: MI0019816.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12955	MIR5803	miR5803, osa-miR5803, osa-MIR5803	MICRORNA5803	MICRORNA5803, osa-miRNA5803	_		4	miRBASE accession: MI0019819.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12956	MIR5804	miR5804, osa-miR5804, osa-MIR5804	MICRORNA5804	MICRORNA5804, osa-miRNA5804	_		4	miRBASE accession: MI0019820.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12957	MIR5805	miR5805, osa-miR5805, osa-MIR5805	MICRORNA5805	MICRORNA5805, osa-miRNA5805	_		12	miRBASE accession: MI0019821.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
12958	MIR5806	miR5806, osa-miR5806, osa-MIR5806	MICRORNA5806	MICRORNA5806, osa-miRNA5806	_		6	miRBASE accession: MI0019822.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12959	MIR5807	miR5807, osa-miR5807, osa-MIR5807	MICRORNA5807	MICRORNA5807, osa-miRNA5807	_		8	miRBASE accession: MI0019824.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12960	MIR5808	miR5808, osa-miR5808, osa-MIR5808	MICRORNA5808	MICRORNA5808, osa-miRNA5808	_		9	miRBASE accession: MI0019825. predicted target(s): DC1 domain protein.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12961	MIR5809	miR5809, osa-miR5809, osa-MIR5809	MICRORNA5809	MICRORNA5809, osa-miRNA5809	_		4	miRBASE accession: MI0019826. predicted targets: Multiple OsDUF506s.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12962	MIR5810	miR5810, osa-miR5810, osa-MIR5810	MICRORNA5810	MICRORNA5810, osa-miRNA5810	_		12	miRBASE accession: MI0019827. Target: OsTIFY11D (Os10g0392400).	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12963	MIR5811	miR5811, osa-miR5811, osa-MIR5811	MICRORNA5811	MICRORNA5811, osa-miRNA5811	_		3	miRBASE accession: MI0019828.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12964	MIR5812	miR5812, osa-miR5812, osa-MIR5812	MICRORNA5812	MICRORNA5812, osa-miRNA5812	_		1	miRBASE accession: MI0019829. predicted target(s): purple acid phosphatase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12965	MIR5813	miR5813, osa-miR5813, osa-MIR5813	MICRORNA5813	MICRORNA5813, osa-miRNA5813	_		4	miRBASE accession: MI0019830.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12966	MIR5814	miR5814, osa-miR5814, osa-MIR5814	MICRORNA5814	MICRORNA5814, osa-miRNA5814	_		6	miRBASE accession: MI0019831.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12967	MIR5815	miR5815, osa-miR5815, osa-MIR5815	MICRORNA5815	MICRORNA5815, osa-miRNA5815	_		1	miRBASE accession: MI0019832. predicted target(s): HECT domain protein.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12968	MIR5816	miR5816, osa-miR5816, osa-MIR5816	MICRORNA5816	MICRORNA5816, osa-miRNA5816	_		9	miRBASE accession: MI0019833. predicted target(s): asp/Glu racemase.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12969	MIR5817	miR5817, osa-miR5817, osa-MIR5817	MICRORNA5817	MICRORNA5817, osa-miRNA5817	_		1	miRBASE accession: MI0019835.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12970	MIR5818	miR5818, osa-miR5818, osa-MIR5818	MICRORNA5818	MICRORNA5818, osa-miRNA5818	_		4	miRBASE accession: MI0019836. predicted target(s): eIF4E.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12971	MIR5820	miR5820, osa-miR5820, osa-MIR5820	MICRORNA5820	MICRORNA5820, osa-miRNA5820	_		10	miRBASE accession: MI0019838. predicted target(s): leucoanthocyanidin reductase.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12972	MIR5821	miR5821, osa-miR5821, osa-MIR5821	MICRORNA5821	MICRORNA5821, osa-miRNA5821	_		12	miRBASE accession: MI0019839.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12973	MIR5822	miR5822, osa-miR5822, osa-MIR5822	MICRORNA5822	MICRORNA5822, osa-miRNA5822	_		11	miRBASE accession: MI0019840.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12974	MIR5823	miR5823, osa-miR5823, osa-MIR5823	MICRORNA5823	MICRORNA5823, osa-miRNA5823	_		11	miRBASE accession: MI0019841.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12975	MIR5824	miR5824, osa-miR5824, osa-MIR5824	MICRORNA5824	MICRORNA5824, osa-miRNA5824	_		1	miRBASE accession: MI0019842.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12976	MIR5825	miR5825, osa-miR5825, osa-MIR5825	MICRORNA5825	MICRORNA5825, osa-miRNA5825	_		5	miRBASE accession: MI0019844.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12977	MIR5826	miR5826, osa-miR5826, osa-MIR5826	MICRORNA5826	MICRORNA5826, osa-miRNA5826	_		11	miRBASE accession: MI0019845. predicted target(s): WRKY transcription factor.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12978	MIR5827	miR5827, osa-miR5827, osa-MIR5827	MICRORNA5827	MICRORNA5827, osa-miRNA5827	_		4	miRBASE accession: MI0019846. predicted target(s): 3Fe-4S ferredoxin.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12979	MIR5828	miR5828, osa-miR5828, osa-MIR5828	MICRORNA5828	MICRORNA5828, osa-miRNA5828	_		6	miRBASE accession: MI0019847.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12980	MIR5829	miR5829, osa-miR5829, osa-MIR5829	MICRORNA5829	MICRORNA5829, osa-miRNA5829	_		6	miRBASE accession: MI0019848.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
12981	MIR5830	miR5830, osa-miR5830, osa-MIR5830	MICRORNA5830	MICRORNA5830, osa-miRNA5830	_		1	miRBASE accession: MI0019849. predicted target(s): HEAT repeat domain protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12982	MIR5831	miR5831, osa-miR5831, osa-MIR5831	MICRORNA5831	MICRORNA5831, osa-miRNA5831	_		5	miRBASE accession: MI0019850.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12983	MIR5832	miR5832, osa-miR5832, osa-MIR5832	MICRORNA5832	MICRORNA5832, osa-miRNA5832	_		12	miRBASE accession: MI0019852.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12984	MIR5833	miR5833, osa-miR5833, osa-MIR5833	MICRORNA5833	MICRORNA5833, osa-miRNA5833	_		5	miRBASE accession: MI0019853.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12985	MIR5834	miR5834, osa-miR5834, osa-MIR5834	MICRORNA5834	MICRORNA5834, osa-miRNA5834	_		6	miRBASE accession: MI0019854.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
12986	MIR5835	miR5835, osa-miR5835, osa-MIR5835	MICRORNA5835	MICRORNA5835, osa-miRNA5835	_		6	miRBASE accession: MI0019855. predicted target(s): protein kinase receptor.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12987	MIR5836	miR5836, osa-miR5836, osa-MIR5836	MICRORNA5836	MICRORNA5836, osa-miRNA5836	_		6	miRBASE accession: MI0019857. predicted target(s): cytochrome P450.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12988	MIR5837	miR5837, osa-miR5837, osa-MIR5837, miR5837.1, miR5837.2	MICRORNA5837	MICRORNA5837, osa-miRNA5837	_		11	miRBASE accession: MI0019858. predicted target(s): phphatidyltransferase, ASC1-like protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12989	MIR812P	miR812p, osa-miR812p, osa-MIR812p	MICRORNA812P	MICRORNA812p, osa-miRNA812p	_		8	miRBASE accession: MI0019799. predicted target(s): ATP binding protein.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
12990	MIR812Q	miR812q, osa-miR812q, osa-MIR812q	MICRORNA812Q	MICRORNA812q, osa-miRNA812q	_		10	miRBASE accession: MI0019800. target gene(s): CIPK10. predicted target(s): CBL interacting protein kinase. miR812q is specifically upregulated by cold stress in both leaf and panicle.	 Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
12991	MIR812R	miR812r, osa-miR812r, osa-MIR812r	MICRORNA812R	MICRORNA812r, osa-miRNA812r	_		11	miRBASE accession: MI0019807.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
12992	MIR812S	miR812s, osa-miR812s, osa-MIR812s	MICRORNA812S	MICRORNA812s, osa-miRNA812s	_		3	miRBASE accession: MI0019812. predicted target(s): SPL11.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12993	MIR812T	miR812t, osa-miR812t, osa-MIR812t	MICRORNA812T	MICRORNA812t, osa-miRNA812t	_		6	miRBASE accession: MI0019817. predicted target(s): ATP binding protein.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12994	MIR812U	miR812u, osa-miR812u, osa-MIR812u	MICRORNA812U	MICRORNA812u, osa-miRNA812u	_		11	miRBASE accession: MI0019818. predicted target(s): ATP binding protein.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
12995	MIR812V	miR812v, osa-miR812v, osa-MIR812v	MICRORNA812V	MICRORNA812v, osa-miRNA812v	_		5	miRBASE accession: MI0019823. predicted target(s): epoxide hydrolase.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
12996	MIR818F	miR818f, osa-miR818f, osa-MIR818f	MICRORNA818F	MICRORNA818f, osa-miRNA818f	_		8	miRBASE accession: MI0023432.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
12997	MIR5143B	miR5143b, osa-miR5143b, osa-MIR5143b	MICRORNA5143B	MICRORNA5143b, osa-miRNA5143b	_		1	miRBASE accession: MI0019834. predicted target(s): phphoinitide 5-phphatase.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
12998	MIR1863C	miR1863c, osa-miR1863c, osa-MIR1863c	MICRORNA1863C	MICRORNA1863c, osa-miRNA1863c	_		12	miRBASE accession: MI0013044.LM381447	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
12999	MIR2871B	miR2871b, osa-miR2871b, osa-MIR2871b	MICRORNA2871B	MICRORNA2871b, osa-miRNA2871b	_		4	miRBASE accession: MI0013036.LM381441	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13000	PIKG	Pikg, Pik-g	PYRICULARIA ORYZAE RESISTANCE KG	Pyricularia oryzae resistance-kg, Magnaporthe grisea resistance-kg, Blast resistance kg			11	Original line is GA20. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance					141.0	GO:0009620 - response to fungus		PO:0020141 - stem node , PO:0009047 - stem , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
13002	PII2	Pi i2, Pii2, Pii2(t)	PYRICULARIA ORYZAE RESISTANCE-I2	Pyricularia oryzae resistance-i2, Magnaporthe grisea resistance-I2, Blast resistance I2			9	Resistant to rice blast disease. Varieties 'Ishikari-shiroge' and 'Fujisaka 5' have this gene. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage.	 Tolerance and resistance - Disease resistance			GR:0060615			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000510 - penetrated to total root ratio, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf , PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009047 - stem 
13003	MIR5819	miR5819, osa-miR5819, osa-MIR5819	MICRORNA5819	MICRORNA5819, osa-miRNA5819	_		1	miRBASE accession: MI0019837. predicted target(s): peptidase.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13004	PI26	Pi26(t), Pi26	PYRICULARIA ORYZAE RESISTANCE 26	Pyricularia oryzae resistance 26, Magnaporthe grisea resistance 26, Blast resistance 26			6	Map position (22.5-63.2 cM). Original line is Gumei 2 (Indica).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13005	PR5	OsPR5, Pir2, PR-5, PR5-1	PATHOGENESIS-RELATED GENE 5 	pathogenesis-related gene 5, Pathogenesis-related protein class 5 gene	PATHOGENESIS-RELATED PROTEIN 5 		12	X68197. P31110. thaumatin-like protein. a Pathogen-lnduced Thaumatin-Like Protein.	 Tolerance and resistance - Disease resistance	Os12g0628600	LOC_Os12g43430.1, LOC_Os12g43380.1				GO:0005576 - extracellular region, GO:0006950 - response to stress, GO:0006952 - defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
13006	HMA1	OsHMA1, osHMA1	HEAVY METAL ATPASE 1	heavy metal ATPase 1, heavy metal P-Type ATPase 1	HEAVY METAL ATPASE 1		6		 Biochemical character	Os06g0690700	LOC_Os06g47550.1, LOC_Os06g47550.2, LOC_Os06g47550.4				GO:0006878 - cellular copper ion homeostasis, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0055069 - zinc ion homeostasis, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0015633 - zinc transporting ATPase activity, GO:0015434 - cadmium-transporting ATPase activity, GO:0009941 - chloroplast envelope, GO:0009642 - response to light intensity, GO:0009636 - response to toxin		
13007	_	OsHMA4, HMA4	_	heavy metal ATPase 4	_				 Biochemical character								
13008	HMA6	OsHMA5, osHMA6, HMA5, OsHMP11, HMP11	HEAVY METAL ATPASE 6	heavy metal ATPase 5, heavy metal ATPase 6, heavy metal P-Type ATPase 6, Heavy metal-associated protein 11	HEAVY METAL ATPASE 6		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0172600	LOC_Os02g07630.1				GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0046688 - response to copper ion, GO:0010043 - response to zinc ion, GO:0043682 - copper-transporting ATPase activity, GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0010288 - response to lead ion	TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	
13009	HMA8	OsHMA6, osHMA8, HMA6, OsHMP20, HMP20	HEAVY METAL ATPASE 8	heavy metal ATPase 6, heavy metal ATPase 8, heavy metal P-Type ATPase 8, Heavy metal-associated protein 20	HEAVY METAL ATPASE 8		3		 Biochemical character	Os03g0178100	LOC_Os03g08070.3, LOC_Os03g08070.1, LOC_Os03g08070.2				GO:0000166 - nucleotide binding, GO:0016020 - membrane, GO:0046872 - metal ion binding		
13010	HMA4	OsHMA7, osHMA4, HMA7, OsHMP12, HMP12	HEAVY METAL ATPASE 4	heavy metal ATPase 7, heavy metal ATPase 4, heavy metal P-Type ATPase 4, Heavy metal-associated protein 12	HEAVY METAL ATPASE 4		2	OsHMA7 in Zhao et al. 2014.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0196600	LOC_Os02g10290.1				GO:0010288 - response to lead ion, GO:0005507 - copper ion binding, GO:0043682 - copper-transporting ATPase activity, GO:0016020 - membrane, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	
13011	HMA5	OsHMA8, osHMA5, HMA8, OsHMP27, HMP27	HEAVY METAL ATPASE 5	heavy metal ATPase 8, heavy metal ATPase 5, heavy metal P-Type ATPase 5, Heavy metal-associated protein 27	HEAVY METAL ATPASE 5	oshma5	4	OsHMA8 in Zhao et al. 2014. GO:0120126: response to copper ion starvation. TO:0006052: copper concentration. TO:0006060: leaf chlorosis. GO:0090546: chlorophyll fluorescence. TO:0020098: nitrate sensitivity.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Root,  Coloration - Chlorophyll,  Character as QTL - Plant growth activity	Os04g0556000	LOC_Os04g46940.1				GO:0015994 - chlorophyll metabolic process, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0016021 - integral to membrane, GO:0060359 - response to ammonium ion, GO:0043682 - copper-transporting ATPase activity, GO:0010167 - response to nitrate, GO:0010232 - vascular transport, GO:0006825 - copper ion transport, GO:0010288 - response to lead ion, GO:0010043 - response to zinc ion, GO:0046686 - response to cadmium ion, GO:0046688 - response to copper ion, GO:0016020 - membrane	TO:0000293 - chlorophyll-a content, TO:0000576 - stem length, TO:0000078 - root dry weight, TO:0000552 - shoot dry weight, TO:0000227 - root length, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000540 - leaf area, TO:0000021 - copper sensitivity, TO:0000351 - zinc sensitivity, TO:0000605 - hydrogen peroxide content	
13012	RNS1	OsRNS1	RIBONUCLEASE 1	RNase 1	RIBONUCLEASE 1		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0630400	LOC_Os07g43670.1				GO:0005886 - plasma membrane, GO:0007568 - aging, GO:0005618 - cell wall, GO:0033897 - ribonuclease T2 activity, GO:0016036 - cellular response to phosphate starvation, GO:0009611 - response to wounding, GO:0003723 - RNA binding, GO:0009718 - anthocyanin biosynthetic process, GO:0042594 - response to starvation, GO:0005576 - extracellular region	TO:0000102 - phosphorus sensitivity	PO:0009005 - root 
13013	RNS2	OsRNS2	RIBONUCLEASE 2	RNase 2	RIBONUCLEASE 2		1	PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0897200	LOC_Os01g67180.1				GO:0042594 - response to starvation, GO:0033897 - ribonuclease T2 activity, GO:0016036 - cellular response to phosphate starvation, GO:0003723 - RNA binding	TO:0000102 - phosphorus sensitivity	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009010 - seed , PO:0009046 - flower 
13015	RNS3	OsRNS3, OsRNasePD2, RNasePD2	RIBONUCLEASE 3	RNase 3, extracellular ribonuclease LE	RIBONUCLEASE 3		8	extracellular ribonuclease LE in Chen et al. 2019. RNasePD2 in Hu et al. 2019.	 Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Biochemical character	Os08g0434100	LOC_Os08g33710.1				GO:0005886 - plasma membrane, GO:0005576 - extracellular region, GO:0042594 - response to starvation, GO:0033897 - ribonuclease T2 activity, GO:0005618 - cell wall, GO:0016036 - cellular response to phosphate starvation, GO:0009718 - anthocyanin biosynthetic process, GO:0009611 - response to wounding, GO:0007568 - aging, GO:0003723 - RNA binding	TO:0000102 - phosphorus sensitivity	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009066 - anther , PO:0009046 - flower , PO:0009010 - seed 
13016	RNS4	OsRNS4, OsRRP, RNaseDIS	RIBONUCLEASE 4	RNase 4, RNase-related protein, drought-induced S-like RNase, RNase DIS, drought induced S-like RNase homologue	RIBONUCLEASE 4		9	AY056038, AF439449, AY061961, AU163522, AU163523, BE230627.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0537700	LOC_Os09g36680.1				GO:0009737 - response to abscisic acid stimulus, GO:0042594 - response to starvation, GO:0010218 - response to far red light, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0016036 - cellular response to phosphate starvation, GO:0010114 - response to red light, GO:0033897 - ribonuclease T2 activity	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000158 - red light sensitivity, TO:0000276 - drought tolerance, TO:0000130 - far red light sensitivity, TO:0000102 - phosphorus sensitivity	PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009046 - flower 
13017	RNS5	OsRNS5	RIBONUCLEASE 5	RNase 5	RIBONUCLEASE 5		9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0538000	LOC_Os09g36700.1				GO:0016036 - cellular response to phosphate starvation, GO:0033897 - ribonuclease T2 activity, GO:0042594 - response to starvation, GO:0003723 - RNA binding	TO:0000102 - phosphorus sensitivity	PO:0020104 - leaf sheath , PO:0009046 - flower , PO:0025034 - leaf , PO:0009006 - shoot system 
13018	RNS6	OsRNS6	RIBONUCLEASE 6	RNase 6	RIBONUCLEASE 6		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0897300	LOC_Os01g67190.1				GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0033897 - ribonuclease T2 activity, GO:0003723 - RNA binding	TO:0000102 - phosphorus sensitivity	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009046 - flower 
13019	PIZH	Pizh	PYRICULARIA ORYZAE RESISTANCE ZH	Pyricularia oryzae resistance-z, Magnaporthe grisea resistance-z, Blast resistance z, Pyricularia oryzae resistance-2, Magnaporthe grisea resistance-2, Blast resistance 2			8	Original line is Zhai-Ya-Quing8. PO:0009047; stem ; PO:0020141; stem node ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. Map position (53.2-84.8 cM). 	 Tolerance and resistance - Disease resistance			GR:0060628			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000522 - stomatal conductance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0020141 - stem node , PO:0009047 - stem 
13020	_	OsZIP9, ZIP9	_	zinc transporter 9, Zn transporter 9, ZRT-IRT-related protein 9, ZIP transporter 9, Zinc- and iron-regulating transport-like protein 9, Zn- and Fe-regulating transport-like protein 9	_		5	Q0DHE3. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0472400 	LOC_Os05g39540.1, LOC_Os05g39540.2				GO:0016021 - integral to membrane, GO:0005385 - zinc ion transmembrane transporter activity, GO:0007623 - circadian rhythm, GO:0010042 - response to manganese ion, GO:0010269 - response to selenium ion, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0016020 - membrane	TO:0000073 - manganese sensitivity, TO:0000032 - selenium sensitivity, TO:0000351 - zinc sensitivity	PO:0020104 - leaf sheath , PO:0009005 - root 
13021	ZIP10	OsZIP10	ZINC TRANSPORTER 10	zinc transporter 10, Zn transporter 10, ZRT-IRT-related protein 10, ZIP transporter 10, Zinc- and iron-regulating transport-like protein 10, Zn- and Fe-regulating transport-like protein 10	ZINC TRANSPORTER 10		6	Q5Z653. GO:0035434: copper ion transmembrane transport. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0566300 	LOC_Os06g37010.1, LOC_Os06g37010.2				GO:0005385 - zinc ion transmembrane transporter activity, GO:0010042 - response to manganese ion, GO:0046686 - response to cadmium ion, GO:0010269 - response to selenium ion, GO:0005886 - plasma membrane, GO:0005381 - iron ion transmembrane transporter activity, GO:0010043 - response to zinc ion, GO:0009624 - response to nematode, GO:0009507 - chloroplast, GO:0034755 - iron ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005375 - copper ion transmembrane transporter activity	TO:0000032 - selenium sensitivity, TO:0000073 - manganese sensitivity, TO:0000351 - zinc sensitivity	
13022	_	OsSERK3, OsSERL6, OsBI-SERK1, BI-SERK1, OsBAK1-3	_	somatic embryogenesis receptor-like kinase 3, somatic embryogenesis receptor kinase 3, SERK-like gene 6, bri1-associated receptor kinase 1 (BAK1) homologue 3	_		6	OsBI-SERK1 in Song et al. 2008. BAD37288. a brassinosteroid-response gene.	 Biochemical character	Os06g0225300	LOC_Os06g12120.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009742 - brassinosteroid mediated signaling		
13023	TMS10	OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1	THERMOSENSITIVE MALE STERILITY 10	thermosensitive male sterility10, thermosensitive male sterility 10, Thermo-Sensitive Genic Male Sterile 10, somatic embryogenesis receptor-like kinase 4, somatic embryogenesis receptor kinase 4, SERK-like gene 9, bri1-associated receptor kinase 1 (BAK1) homologue 5		tms10	2	LOC_Os02g18320. AK066118. BAD22198. OsSERK2 in Song et al. 2008.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os02g0283800	LOC_Os02g18320.1				GO:0009555 - pollen development, GO:0005886 - plasma membrane, GO:0009266 - response to temperature stimulus, GO:0009556 - microsporogenesis, GO:0048653 - anther development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0048658 - tapetal layer development	TO:0000067 - genic male sterility-thermo sensitive, TO:0000421 - pollen fertility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
13024	SERL1	OsSERL1, OsBAK1-8, BAK1-8	SERK-LIKE GENE 1	SERK-like gene 1, bri1-associated receptor kinase 1 (BAK1) homologue 8	SERK-LIKE PROTEIN 1		11		 Biochemical character	Os11g0607200	LOC_Os11g39370.1, LOC_Os11g39370.2				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
13025	SERL2	OsSERL2, SERK1, OsBAK1-7, BAK1-7	SERK-LIKE GENE 2	SERK-like gene 2, Somatic Embryogenesis Protein Kinase 1, bri1-associated receptor kinase 1 (BAK1) homologue 7	SERK-LIKE PROTEIN 2	osserl2-1, osserl2-2	6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). LOC_Os06g16330. a rice ortholog of Arabidopsis NIK1/NIK2. targeted by OS_AGO1_sRNA397 (Qin et al. 2017).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0274500	LOC_Os06g16330.1				GO:0051607 - defense response to virus, GO:0005737 - cytoplasm, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
13026	SERL3	OsSERL3	SERK-LIKE GENE 3	SERK-like gene 3	SERK-LIKE PROTEIN 3		2		 Biochemical character	Os02g0728500	LOC_Os02g49600.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13027	DOCS1	OsSERL4, OsBAK1-9, Docs1, OsDOCS1	DEFECTIVE IN OUTER CELL LAYER SPECIFICATION 1	SERK-like gene 4, bri1-associated receptor kinase 1 (BAK1) homologue 9, defective in outer cell layer specification 1	SERK-LIKE PROTEIN 4		2	A leucine-rich repeat receptor-like kinase.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0236100	LOC_Os02g14120.1				GO:0048364 - root development, GO:0010044 - response to aluminum ion, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000354 - aluminum sensitivity	PO:0007520 - root development stage 
13031	SERL8	OsSERL8, OsBAK1-6, BAK1-6, TMS10L	SERK-LIKE GENE 8	SERK-like gene 8, bri1-associated receptor kinase 1 (BAK1) homologue 6, TMS10-Like, Thermo-Sensitive Genic Male Sterile 10-like	SERK-LIKE PROTEIN 8	tms10l, ms10l-1, ms10l-2	3		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0703200	LOC_Os03g49620.2, LOC_Os03g49620.3, LOC_Os03g49620.4, LOC_Os03g49620.5, LOC_Os03g49620.7, LOC_Os03g49620.8				GO:0048653 - anther development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048658 - tapetal layer development	TO:0000421 - pollen fertility, TO:0000067 - genic male sterility-thermo sensitive	PO:0001004 - anther development stage 
13033	_	OsBiSERK1	_	BTH-induced SERK1, benzothiadiazole-induced SERK1				AY463361.	 Biochemical character						GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
13034	PCNA	OsPCNA	PROLIFERATING CELL NUCLEAR ANTIGEN	proliferating cell nuclear antigen, Proliferating-cell nuclear antigen, DNA polymerase delta auxiliary protein, cyclin	PROLIFERATING CELL NUCLEAR ANTIGEN		2	X54046. J04538. P17070. D16056. KC609145-KC609157 (O. sativa and wild rice species, intron 3). accessory protein of DNA polymerases. OsPCNA  is likely to be involved in the Ku-independent alternative non-homologous end-joining pathway (A-NHEJ pathway). (Ishii et al. 2016)	 Tolerance and resistance - Stress tolerance,  Other	Os02g0805200	LOC_Os02g56130.1				GO:0006275 - regulation of DNA replication, GO:0010332 - response to gamma radiation, GO:0006260 - DNA replication, GO:0005737 - cytoplasm, GO:0043626 - PCNA complex, GO:0009314 - response to radiation, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0005730 - nucleolus, GO:0042542 - response to hydrogen peroxide, GO:0030337 - DNA polymerase processivity factor activity, GO:0006974 - response to DNA damage stimulus, GO:0009411 - response to UV, GO:0042276 - error-prone postreplication DNA repair, GO:0003677 - DNA binding	TO:0000160 - UV light sensitivity	PO:0020148 - shoot apical meristem 
13035	SEND1	OsSEND-1, OsSEND1	SINGLE-STRAND DNA ENDONUCLEASE 1	single-strand DNA endonuclease-1	SINGLE-STRAND DNA ENDONUCLEASE 1	ossend1-1, ossend1-2	8	AB074260. Q8W5R1. GO:0090305: nucleic acid phosphodiester bond hydrolysis. Yen1/GEN1 ortholog in rice.	 Tolerance and resistance - Stress tolerance	Os08g0101600	LOC_Os08g01130.1				GO:0005634 - nucleus, GO:0009411 - response to UV, GO:0003677 - DNA binding, GO:0046872 - metal ion binding, GO:0004519 - endonuclease activity, GO:0006281 - DNA repair	TO:0000160 - UV light sensitivity	
13036	_	OsKCH1, KCH1, OsKCH, KCH, O12	_	Kinesin O12, Kinesin OsKCH1			12	Q0IMS9.		Os12g0547500	LOC_Os12g36100.1, LOC_Os12g36100.2				GO:0005871 - kinesin complex, GO:0043621 - protein self-association, GO:0031534 - minus-end directed microtubule sliding, GO:0007097 - nuclear migration, GO:0051647 - nucleus localization, GO:0015629 - actin cytoskeleton, GO:0015630 - microtubule cytoskeleton, GO:0008569 - minus-end-directed microtubule motor activity, GO:0016887 - ATPase activity, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0005874 - microtubule, GO:0005875 - microtubule associated complex, GO:0007018 - microtubule-based movement, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding, GO:0003779 - actin binding		
13037	POXA	poxA, prx126, OsPrx126, prxRPA, RPA	PEROXIDASE A	Peroxidase A, class III peroxidase 126	PEROXIDASE A		10	D84400. BN000655. D14481.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0109600	LOC_Os10g02070.1				GO:0005634 - nucleus, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0005737 - cytoplasm		
13038	POXN	poxN, prx38, prxRPN, RPN, poxN/PRX38, Osprx38, OsPOXN	PEROXIDASE N	Peroxidase N, class III peroxidase 38	PEROXIDASE N		3	D49551. BN000567. D14482.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0235000	LOC_Os03g13210.1				GO:0020037 - heme binding, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity	TO:0000179 - biotic stress trait, TO:0000074 - blast disease	
13039	TRKE	TRKe, Rke, NRKe, 9RKe	TEQING RECEPTOR KINASE E	receptor-kinase gene e in Teqing, receptor-kinase gene e in Nipponbare, receptor-kinase gene e in 93-11	TEQING RECEPTOR KINASE E		11	DQ355953. JN176870, JN176871.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Lesion mimic						GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13040	TRKF	TRKf	TEQING RECEPTOR KINASE F	receptor-kinase gene f in Teqing	TEQING RECEPTOR KINASE F		11	pseudogene. DQ355954. wild rice ortholog: OoRKf (O. officinalis).									
13041	TRKG	TRKg	TEQING RECEPTOR KINASE G	receptor-kinase gene g in Teqing	TEQING RECEPTOR KINASE G		11	pseudogene. DQ355955. wild rice ortholog: OmRKg (O. minuta).									
13042	TRKH	TRKh	TEQING RECEPTOR KINASE H	receptor-kinase gene h in Teqing	TEQING RECEPTOR KINASE H		11	pseudogene. DQ355955.									
13043	TRKI	TRKi	TEQING RECEPTOR KINASE I	receptor-kinase gene i in Teqing	TEQING RECEPTOR KINASE I		11	pseudogene. DQ355955.									
13044	TRKJ	TRKj	TEQING RECEPTOR KINASE J	receptor-kinase gene j in Teqing	TEQING RECEPTOR KINASE J		11	pseudogene. DQ355956.									
13045	PI39	Pi39(t), Pi39	PYRICULARIA ORYZAE RESISTANCE 39	Pyricularia grisea resistance 39, Magnaporthe grisea resistance 39, Blast resistance 39			4	Original line is Chubu 111 (Japonica). Map position (107.4-108.2 cM).	 Character as QTL - Grain quality,  Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000510 - penetrated to total root ratio, TO:0000477 - panicle blast disease resistance	
13046	PI27	Pi27, Pi27(t), Pi-27(t)	PYRICULARIA ORYZAE RESISTANCE 27	Pyricularia oryzae resistance-27(t), Magnaporthe grisea resistance 27, Blast resistance 27			1	Original line is Q14. Map position (28.4-38.3 cM).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13047	PIGD1	Pi-GD-1(t), PiGD1, PiGD-1(t)	PYRICULARIA ORYZAE RESISTANCE GD1	Pyricularia oryzae resistance GD1			8	Original line is Sanhuangzhan 2 (Indica). The Pi-GD-1(t) gene is 11.3 cM from the anchor marker RG1034 (Liu et al. 2004).	 Tolerance and resistance - Disease resistance			GR:0060657			GO:0009620 - response to fungus	TO:0000480 - nutrient sensitivity, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	
13049	PI56	Pi56, qBR9.1, Pi56(t)	PYRICULARIA ORYZAE RESISTANCE 56		NBR-LRR PROTEIN		9	Original line is Sanhuangzhan No2 (SHZ-2). Pi46(t) in Liu et al. 2009 was renamed Pi56(t) in Liu et al. 2013. LOC_Os09g16000	 Tolerance and resistance - Disease resistance	Os09g0328951	LOC_Os09g16000.1				GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0006952 - defense response		
13050	PI25	Pi25(t), Pi-25(t), RMg62	PYRICULARIA ORYZAE RESISTANCE 25	Pyricularia oryzae resistance-25(t), Blast resistance 25, Blast resistance 25			1	Original line is Sanbangqishiluo.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13051	PI43	Pi43, Pi43(t), Pi-43(t)	PYRICULARIA ORYZAE RESISTANCE 43	Pyricularia oryzae resistance 43, Magnaporthe grisea resistance 43, Blast resistance 43			11	Original line is Zhe733 (Indica). Pi42 in Lee et al. 2009 (Plant & Animal Genomics XVII Conference) was renamed Pi43 in Lee et al. 2009 (Mol Breeding  2009 24 127-134).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13052	PI50	Pi50(t)	PYRICULARIA ORYZAE RESISTANCE 50	Pyricularia oryzae resistance 50, Magnaporthe grisea resistance 50, Blast resistance 50			6	Pi50(t) is one of the NBS-LRR genes in the Pi2/Pi9 cluster on chromosome 6.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13053	PI51	Pi51(t)	PYRICULARIA ORYZAE RESISTANCE 51	Pyricularia oryzae resistance 51, Magnaporthe grisea resistance 51, Blast resistance 51			12	Original line is Tianjingyeshengdao. Pi51(t) is mapped in the interval between RM5364 and RM27990 on chromosome 12.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13054	PI51	Pi51(t)	PYRICULARIA ORYZAE RESISTANCE 51	Pyricularia oryzae resistance 51, Magnaporthe grisea resistance 51, Blast resistance 51			6	Original line is D69. Pi51(t) was delimited to an interval of ~100.8 kb flanked by markers Ind306 and RM19818, where Pi2, Pi9, Piz, Piz-t, Pigm(t), and Pi40(t) reside.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13055	PID3	Pi-d3, Pid3, Pi25, Pid3-I1, qBRM6.2	PYRICULARIA ORYZAE RESISTANCE D3	Pyricularia oryzae resistance D3, Magnaporthe grisea resistance-D3, Blast resistance D3, Pyricularia oryzae resistance-d3, PIRICULARIA ORYZAE RESISTANCE IN DIGU 3		Pid3-I1	6	FJ745364(Digu), FJ745365(ZYQ8), FJ745366(TP309), FJ745367(LTH), FJ745368(A4), FJ773285(93-11), FJ773286(Nipponbare). CK083629. HM448480, HM448481. Resistance genes Pi25 and Pid3, both encoding resistance against Magnaporthe oryzae, are allelic and vary in a single nucleotide (Chen et al., 2011). Pid3-A4: an Oryza rufipogon ortholog of Rice Blast Resistance Gene Pid3. KC008606 (Oryza rufipogon, promoter region of Pid3-A4).	 Tolerance and resistance - Disease resistance	Os06g0330100	LOC_Os06g22460.1	GR:0061186		63.2	GO:0009620 - response to fungus, GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000468 - leaf blast disease resistance, TO:0000074 - blast disease	
13056	PI55-1	pi55-1, pi55(t), OsIRL4	PYRICULARIA ORYZAE RESISTANCE 55-1	Pyricularia oryzae resistance 55-1, Magnaporthe grisea resistance 55-1, Blast resistance 55-1, intracellular Ras-group-related LRR protein 4			8	leucine-rich repeat containing protein. pi55-1 is a leucine-rich repeat-containing protein and one of the most promissing candidate genea for pi55(t). AK065422.	 Tolerance and resistance - Disease resistance	Os08g0511700	LOC_Os08g40090.1				GO:0009620 - response to fungus, GO:0005886 - plasma membrane		PO:0009005 - root 
13057	PI55-2	pi55-2, pi55(t)	PYRICULARIA ORYZAE RESISTANCE 55-2	Pyricularia oryzae resistance 55-2, Magnaporthe grisea resistance 55-2, Blast resistance 55-2			8	pi55-2 is a heavy-metal-associated domain-containing protein and one of the most promissing candidate genes for pi55(t).	 Tolerance and resistance - Disease resistance	Os08g0512200	LOC_Os08g40130.1				GO:0046872 - metal ion binding, GO:0030001 - metal ion transport, GO:0009620 - response to fungus		
13058	PIBH8	Pib-H8, PibH8, OsPibH8	PYRICULARIA ORYZAE RESISTANCE  BH8	Pyricularia oryzae resistance from Lemont, Magnaporthe grisea resistance from Lemont, Magnaporthe grisea resistance-b-H8, Pib homologue on chromosome 8			8	AB013451.	 Tolerance and resistance - Disease resistance	Os08g0539700	LOC_Os08g42700.1				GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0043531 - ADP binding, GO:0009620 - response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance	
13059	PIQ6	Piq6(t)	PYRICULARIA ORYZAE RESISTANCE Q6	Pyricularia oryzae resistance q6, Magnaporthe grisea resistance q6, Blast resistance q6			6	Pi34 and Piq6(t) acted additively on resistance to rice blast but the effect of Piq6(t) was relatively small compared with Pi34. (Zenbayshi et al. 2007).	 Tolerance and resistance - Disease resistance			GR:0060663			GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	
13060	PIZY	Pi-zy, Pi-zy(t)	PYRICULARIA ORYZAE RESISTANCE ZY	Magnaporthe grisea resistance zy, Blast resistance zy			11		 Tolerance and resistance - Disease resistance					58.7	GO:0009620 - response to fungus		
13061	PIR2-3	Pir2-3, Pir2-3(t)	PYRICULARIA ORYZAE RESISTANCE R2-3	Pyricularia oryzae resistance R2-3, Magnaporthe grisea resistance-R2-3, Blast resistance R2-3			2	Pir2-3(t) originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000488 - seed composition based quality trait, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
13062	PIR4	Pir4	PYRICULARIA ORYZAE RESISTANCE R4	Pyricularia oryzae resistance R4, Magnaporthe grisea resistance-R4, Blast resistance R4			2	The blast resistance gene Pir4 originated from O. rufipogon. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					110.9	GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance, TO:0000488 - seed composition based quality trait	PO:0009025 - vascular leaf 
13063	PIR7	Pir7	PYRICULARIA ORYZAE RESISTANCE R7	Pyricularia oryzae resistance R7, Magnaporthe grisea resistance-R7, Blast resistance R7			2	The blast resistance gene Pir7 originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					122.8	GO:0009620 - response to fungus	TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
13064	PIR9-2	Pir9-2, Pir9-2(t)	PYRICULARIA ORYZAE RESISTANCE R9-2	Pyricularia oryzae resistance R9-2, Magnaporthe grisea resistance-R9-2, Blast resistance R9-2			9	Pir9-2(t) originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					49.3	GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait	PO:0009025 - vascular leaf 
13065	PIR12-2	Pir12-2, Pir12-2(t)	PYRICULARIA ORYZAE RESISTANCE R12-2	Pyricularia oryzae resistance R12-2, Magnaporthe grisea resistance-R12-2, Blast resistance R12-2			12	Pir12-2(t) originated from IR64. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					21.9	GO:0009620 - response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait	PO:0009025 - vascular leaf 
13066	PIRF2-1	Pirf2-1, Pirf2-1(t)	PYRICULARIA ORYZAE RESISTANCE RF2-1	Pyricularia oryzae resistance RF2-1, Magnaporthe grisea resistance-RF2-1, Blast resistance RF2-1			2	Pirf2-1(t) originated from Oryza rufipogon. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling.	 Tolerance and resistance - Disease resistance					172.3	GO:0009620 - response to fungus	TO:0000488 - seed composition based quality trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0009025 - vascular leaf 
13067	FLO11	OsHsp70CP2, HSP70CP2, OsFLO11, OsFLO11-2, FLO11-2, cpHSP70-2, OsHsp70cp-2, Hsp70cp-2	FLOURY ENDOSPERM 11	heat shock protein 70 chloroplast protein 2, HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2, FLOURY ENDOSPERM11-2, plastid HSP70-2, plastid-localized 70-kDa heat shock protein 2	HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2	flo11-2, flo11	12		 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm	Os12g0244100	LOC_Os12g14070.1				GO:0046686 - response to cadmium ion, GO:0009960 - endosperm development, GO:0006457 - protein folding, GO:0009941 - chloroplast envelope, GO:0005739 - mitochondrion, GO:0005634 - nucleus, GO:0009579 - thylakoid, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0048046 - apoplast, GO:0045036 - protein targeting to chloroplast, GO:0009660 - amyloplast organization, GO:0009570 - chloroplast stroma	TO:0000266 - chalky endosperm, TO:0000259 - heat tolerance	PO:0007633 - endosperm development stage 
13069	MSRPK1	OsMSRPK1, Orysa;CDKG;1, OsCDKG;1, CDKG;1, CDKG-2, OsCDKG-2	MULTIPLE STRESS RESPONSIVE MAP KINASE 1	multiple stress responsive MAP kinase 1	MULTIPLE STRESS RESPONSIVE MAP KINASE 1		2	Q6K5F8. CDKG-2 in Hu et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0602100	LOC_Os02g39010.1, LOC_Os02g39010.2, LOC_Os02g39010.3				GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding		
13070	ONI3	OsONI3	ONION 3	ONION3		oni3, oni3-1, oni3-2, oni3-3, oni3-4, oni3-5, oni3-6, oni3-7	9	a homolog of Arabidopsis L1-specific gene HTH (HOTHEAD). an HTH1-related protein. long-chain fatty acid omega-alcohol dehydrogenase.	 Biochemical character,  Vegetative organ - Leaf	Os09g0363900	LOC_Os09g19930.1				GO:0010430 - fatty acid omega-oxidation, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0048366 - leaf development, GO:0042759 - long-chain fatty acid biosynthetic process, GO:0050660 - FAD binding, GO:0048367 - shoot development	TO:0000135 - leaf length, TO:0000655 - leaf development trait, TO:0000654 - shoot development trait	PO:0007033 - whole plant development stage , PO:0001050 - leaf development stage , PO:0000037 - shoot apex , PO:0007112 - 1 main shoot growth stage 
13071	PIR7B	Pir7b	PYRICULARIA ORYZAE RESISTANCE R7B	Pyricularia oryzae resistance R7b, Magnaporthe grisea resistance-R7b, Blast resistance R7b			1	Z34270, Z34271. Q0JG99.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0934800	LOC_Os01g70850.2, LOC_Os01g70850.1				GO:0004091 - carboxylesterase activity		
13072	PIR7A	Pir7a	PYRICULARIA ORYZAE RESISTANCE R7A	Pyricularia oryzae resistance R7a, Magnaporthe grisea resistance-R7a, Blast resistance R7a			1	Z34271. A2WYS7.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0934900	LOC_Os01g70860.1				GO:0004091 - carboxylesterase activity		
13073	PDR13	OsPDR13	PLEIOTROPIC DRUG RESISTANCE 13	pleiotropic drug resistance 13	PLEIOTROPIC DRUG RESISTANCE 13		6	AJ535042. Q8S628.	 Biochemical character	Os10g0205500	LOC_Os10g13830.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006810 - transport, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
13074	PDR4	OsPDR4	PLEIOTROPIC DRUG RESISTANCE 4	pleiotropic drug resistance 4	PLEIOTROPIC DRUG RESISTANCE 4		2	AJ535051.	 Biochemical character	Os02g0318600	LOC_Os02g21350.1				GO:0016887 - ATPase activity, GO:0006200 - ATP catabolic process, GO:0016020 - membrane, GO:0005524 - ATP binding		
13075	PDR14.P	OsPDR14, PDR14, pdr14	PLEIOTROPIC DRUG RESISTANCE 14 PSEUDOGENE	pleiotropic drug resistance 14, PDR14 pseudogene				AJ535214.									
13076	_	PMP2	_	Peroxisomal Membrane Protein 2	_			a peroxisomal abc-type transporter homologous to AtPMP2. AJ535082.	 Biochemical character						GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006200 - ATP catabolic process		
13077	MIR156J	miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p	MICRORNA156J	micro RNA 156j, microRNA156j, osa-miRNA156j			6	miRBASE accession: MI0000662. target gene(s): SPL (Squamosa Promoter binding protein Like) gene family. LM383047 LM379149	 Vegetative organ - Culm,  Other,  Tolerance and resistance - Disease resistance						GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease, TO:0000329 - tillering ability	PO:0009006 - shoot system 
13078	MIR1432	miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432	MICRORNA1432	MICRORNA1432, osa-miRNA1432	_		7	miRBASE accession: MI0006972. Predicted targets: Os03g0812400 (EF hand family protein), Os03g0812800, Os03g0813500. HM139004-HM139045 (O. sativa, O. rufipogon). LM380731. TO:0020106: Indole-3-acetic acid content. GO:1900426: positive regulation of defense response to bacterium. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1903427: negative regulation of reactive oxygen species biosynthetic process. GO:2000071: regulation of defense response by callose deposition.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0002237 - response to molecule of bacterial origin, GO:0035068 - micro-ribonucleoprotein complex, GO:0010200 - response to chitin, GO:0046686 - response to cadmium ion, GO:0002238 - response to molecule of fungal origin, GO:0052542 - callose deposition during defense response, GO:0042742 - defense response to bacterium, GO:0080050 - regulation of seed development	TO:0000592 - 1000-dehulled grain weight, TO:0000605 - hydrogen peroxide content, TO:0000447 - filled grain number, TO:0002667 - abscisic acid content, TO:0000152 - panicle number, TO:0000074 - blast disease, TO:0000149 - seed width, TO:0000396 - grain yield, TO:0000304 - seed thickness, TO:0000175 - bacterial blight disease resistance, TO:0000590 - grain weight, TO:0000371 - yield trait, TO:0002672 - auxin content, TO:0000734 - grain length	
13079	MIR396E	miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p	MICRORNA396E	MICRORNA396e, osa-miRNA396e	_		4	miRBASE accession: MI0001703.LM381739 LM379525	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000074 - blast disease	
13080	MIR810B	miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2	MICRORNA810B	MICRORNA810b, osa-miRNA810b	_		11	miRBASE accession: MI0006986. LM380742, LM380743. Predicted targets: Os02g0132100 (PPR protein), LOC_Os01g65990.	 Other,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage	TO:0000303 - cold tolerance	
13081	MIR2863A	miR2863a, osa-miR2863a, osa-MIR2863a	MICRORNA2863A	MICRORNA2863a, osa-miRNA2863a	_		3	miRBASE accession: MI0013025.LM381431	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13082	MIR2864	miR2864, osa-miR2864, osa-MIR2864, osa-miR2864.1, osa-miR2864.2	MICRORNA2864	MICRORNA2864, osa-miRNA2864	_		12	miRBASE accession: MI0013026. LM381432, LM381433.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13083	MIR2865	miR2865, osa-miR2865, osa-MIR2865	MICRORNA2865	MICRORNA2865, osa-miRNA2865	_		9	miRBASE accession: MI0013027.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13084	MIR2866	miR2866, osa-miR2866, osa-MIR2866	MICRORNA2866	MICRORNA2866, osa-miRNA2866	_		3	miRBASE accession: MI0013028.LM381434	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13085	MIR2867	miR2867, osa-miR2867, osa-MIR2867osa-miR2867-3p osa-miR2867-5p	MICRORNA2867	MICRORNA2867, osa-miRNA2867	_		11	miRBASE accession: MI0013029.LM382874 LM381435	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13086	MIR2868	miR2868, osa-miR2868, osa-MIR2868	MICRORNA2868	MICRORNA2868, osa-miRNA2868	_		11	miRBASE accession: MI0013030.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13087	MIR2869	miR2869, osa-miR2869, osa-MIR2869	MICRORNA2869	MICRORNA2869, osa-miRNA2869	_		5	miRBASE accession: MI0013031.LM381436	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13088	MIR2870	miR2870, osa-miR2870, osa-MIR2870	MICRORNA2870	MICRORNA2870, osa-miRNA2870	_		1	miRBASE accession: MI0013032.LM381437	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13089	MIR2863B	miR2863b, osa-miR2863b, osa-MIR2863b	MICRORNA2863B	MICRORNA2863b, osa-miRNA2863b	_		2	miRBASE accession: MI0013033.LM381438	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13090	MIR2905	miR2905, osa-miR2905, osa-MIR2905	MICRORNA2905	MICRORNA2905, osa-miRNA2905	_		3	miRBASE accession: MI0013034.LM381439	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13091	MIR2871A	miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p	MICRORNA2871A	MICRORNA2871a, osa-miRNA2871a	_		5	miRBASE accession: MI0013035.LM381440 LM382875	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13092	MIR2872	miR2872, osa-miR2872, osa-MIR2872	MICRORNA2872	MICRORNA2872, osa-miRNA2872	_		11	miRBASE accession: MI0013037.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13093	MIR2873	miR2873, osa-miR2873, osa-MIR2873, osa-MIR2873a	MICRORNA2873	MICRORNA2873, osa-miRNA2873	_		11	miRBASE accession: MI0013038.LM381442	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13094	MIR2874	miR2874, osa-miR2874, osa-MIR2874	MICRORNA2874	MICRORNA2874, osa-miRNA2874	_		8	miRBASE accession: MI0013039.LM381443	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13095	MIR2875	miR2875, osa-miR2875, osa-MIR2875	MICRORNA2875	MICRORNA2875, osa-miRNA2875	_		8	miRBASE accession: MI0013040.LM381444	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13096	MIR2876	miR2876, osa-miR2876, osa-MIR2876, osa-miR2876.1, osa-miR2876.2	MICRORNA2876	MICRORNA2876, osa-miRNA2876	_		6	miRBASE accession: MI0013041.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13097	MIR2877	miR2877, osa-miR2877, osa-MIR2877	MICRORNA2877	MICRORNA2877, osa-miRNA2877	_		4	miRBASE accession: MI0013042.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13098	MIR2878	miR2878, osa-miR2878, osa-MIR2878, osa-miR2878-5p, osa-miR2878-3posa-miR2878-3p osa-miR2878-5p	MICRORNA2878	MICRORNA2878, osa-miRNA2878	_		8	miRBASE accession: MI0013043. LM381446 LM381445.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
13099	MIR2879	miR2879, osa-miR2879, osa-MIR2879	MICRORNA2879	MICRORNA2879, osa-miRNA2879	_		2	miRBASE accession: MI0013045.LM381448	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13100	MIR2880	miR2880, osa-miR2880, osa-MIR2880	MICRORNA2880	MICRORNA2880, osa-miRNA2880	_		3	miRBASE accession: MI0013046.LM381449	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13101	MIR396G	miR396g, osa-miR396g, osa-MIR396g	MICRORNA396G	MICRORNA396g, osa-miRNA396g	_		6	miRBASE accession: MI0013047.LM381450	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold, GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0016442 - RNA-induced silencing complex	TO:0000303 - cold tolerance, TO:0000074 - blast disease	
13102	MIR396H	miR396h, osa-miR396h, osa-MIR396h	MICRORNA396H	MICRORNA396h, osa-miRNA396h	_		2	miRBASE accession: MI0013048.LM381451	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0009409 - response to cold, GO:0035195 - gene silencing by miRNA, GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000074 - blast disease, TO:0000303 - cold tolerance	
13103	MIR1863B	miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p	MICRORNA1863B	MICRORNA1863b, osa-miRNA1863b	_		12	miRBASE accession: MI0013050. LM382876.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13104	MIR395X	miR395x, osa-miR395x, osa-MIR395x	MICRORNA395X	MICRORNA395x, osa-miRNA395x	_		4	miRBASE accession: MI0013350.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13105	MIR395Y	miR395y, osa-miR395y, osa-MIR395y	MICRORNA395Y	MICRORNA395y, osa-miRNA395y	_		8	miRBASE accession: MI0013351.LM381476	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13106	MIR812M	miR812m, osa-miR812m, osa-MIR812m	MICRORNA812M	MICRORNA812m, osa-miRNA812m	_		8	miRBASE accession: MI0017247.LM382516	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13107	MIR812N	miR812n, osa-miR812n, osa-MIR812nosa-miR812n-3p osa-miR812n-5p	MICRORNA812N	MICRORNA812n, osa-miRNA812n	_		8	miRBASE accession: MI0017254.LM382526 LM382525	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13108	MIR1862G	miR1862g, osa-miR1862g, osa-MIR1862g	MICRORNA1862G	MICRORNA1862g, osa-miRNA1862g	_		4	miRBASE accession: MI0017249.LM382518	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13109	MIR3981	miR3981, osa-miR3981, osa-MIR3981osa-miR3981-3p osa-miR3981-5p	MICRORNA3981	MICRORNA3981, osa-miRNA3981	_		5	miRBASE accession: MI0017256. miR3981 was found located in the last exon of the AK106348 mRNA encoding a putative glyoxalase. And miR3981-5p and miR3981-3p are both predicted to target the AK106348 mRNA.LM382530 LM382529	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13110	MIR2873B	miR2873b, osa-miR2873b, osa-MIR2873b	MICRORNA2873B	MICRORNA2873b, osa-miRNA2873b	_		2	miRBASE accession: MI0017257.LM382531	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13111	MIR3982	miR3982, osa-miR3982, osa-MIR3982osa-miR3982-3p osa-miR3982-5p	MICRORNA3982	MICRORNA3982, osa-miRNA3982	_		11	miRBASE accession: MI0017258.LM382533 LM382532	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13112	MIR5071	miR5071, osa-miR5071, osa-MIR5071	MICRORNA5071	MICRORNA5071, osa-miRNA5071	_		8	miRBASE accession: MI0017942.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13113	MIR5072	miR5072, osa-miR5072, osa-MIR5072	MICRORNA5072	MICRORNA5072, osa-miRNA5072	_		6	miRBASE accession: MI0017943.LM382697	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13114	MIR5073	miR5073, osa-miR5073, osa-MIR5073	MICRORNA5073	MICRORNA5073, osa-miRNA5073	_		8	miRBASE accession: MI0017946.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13115	MIR5074	miR5074, osa-miR5074, osa-MIR5074	MICRORNA5074	MICRORNA5074, osa-miRNA5074	_		12	miRBASE accession: MI0017950.LM382698	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13116	MIR5075	miR5075, osa-miR5075, osa-MIR5075	MICRORNA5075	MICRORNA5075, osa-miRNA5075	_		11	miRBASE accession: MI0017952. target gene: Os02g0817500. Target: OsDREPP2 (Os02g0285300). predicted targets: Multiple OsDUF506s.	 Seed - Physiological traits,  Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex	TO:0000430 - germination rate	
13117	MIR5076	miR5076, osa-miR5076, osa-MIR5076	MICRORNA5076	MICRORNA5076, osa-miRNA5076	_		1	miRBASE accession: MI0017955.LM382699	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13118	MIR5077	miR5077, osa-miR5077, osa-MIR5077	MICRORNA5077	MICRORNA5077, osa-miRNA5077	_		3	miRBASE accession: MI0017965.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13119	MIR5078	miR5078, osa-miR5078, osa-MIR5078	MICRORNA5078	MICRORNA5078, osa-miRNA5078	_		5	miRBASE accession: MI0017966.LM382700	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13120	MIR5079	miR5079, osa-miR5079, osa-MIR5079, osa-MIR5079a	MICRORNA5079	MICRORNA5079, osa-miRNA5079	_		10	miRBASE accession: MI0017969.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13121	MIR5080	miR5080, osa-miR5080, osa-MIR5080	MICRORNA5080	MICRORNA5080, osa-miRNA5080	_		10	miRBASE accession: MI0017970.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13122	MIR5081	miR5081, osa-miR5081, osa-MIR5081	MICRORNA5081	MICRORNA5081, osa-miRNA5081	_		7	miRBASE accession: MI0017972.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13123	MIR5082	miR5082, osa-miR5082, osa-MIR5082	MICRORNA5082	MICRORNA5082, osa-miRNA5082	_		11	miRBASE accession: MI0017973.LM382701	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13124	MIR5083	miR5083, osa-miR5083, osa-MIR5083	MICRORNA5083	MICRORNA5083, osa-miRNA5083	_		1	miRBASE accession: MI0017974.LM382702	 Other,  Tolerance and resistance - Stress tolerance						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0009414 - response to water deprivation, GO:0019722 - calcium-mediated signaling	TO:0000276 - drought tolerance	
13125	MIR5144	miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p	MICRORNA5144	MICRORNA5144, osa-miRNA5144, MicroRNA5144-3p	_		1	miRBASE accession: MI0018056. LM382889, LM382888. target: OsLOG1 (Os01g0588900), OsWD40-24 (Os01g0725800).	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Other,  Seed - Physiological traits						GO:0016442 - RNA-induced silencing complex, GO:0009651 - response to salt stress, GO:0009736 - cytokinin mediated signaling, GO:0046689 - response to mercury ion, GO:0055122 - response to very low light intensity stimulus, GO:0010229 - inflorescence development, GO:0035195 - gene silencing by miRNA, GO:0048316 - seed development, GO:0006379 - mRNA cleavage, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0009408 - response to heat	TO:0006032 - panicle size, TO:0000266 - chalky endosperm, TO:0000259 - heat tolerance, TO:0000104 - floury endosperm, TO:0006001 - salt tolerance, TO:0000382 - 1000-seed weight, TO:0000653 - seed development trait, TO:0000303 - cold tolerance, TO:0000460 - light intensity sensitivity, TO:0000621 - inflorescence development trait	PO:0009047 - stem , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0020104 - leaf sheath 
13126	MIR5145	miR5145, osa-miR5145, osa-MIR5145, MIR5145-5p	MICRORNA5145	MICRORNA5145, osa-miRNA5145	_		1	miRBASE accession: MI0018057.LM382890	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13127	MIR5146	miR5146, osa-miR5146, osa-MIR5146, MIR5146-3p	MICRORNA5146	MICRORNA5146, osa-miRNA5146	_		1	miRBASE accession: MI0018058.LM382891	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13128	MIR5148A	miR5148a, osa-miR5148a, osa-MIR5148a, MIR5148a-3p	MICRORNA5148A	MICRORNA5148a, osa-miRNA5148a	_		3	miRBASE accession: MI0018061.LM382894	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13129	MIR5148B	miR5148b, osa-miR5148b, osa-MIR5148b, MIR5148b-3p	MICRORNA5148B	MICRORNA5148b, osa-miRNA5148b	_		6	miRBASE accession: MI0018062.LM382895	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13130	MIR5148C	miR5148c, osa-miR5148c, osa-MIR5148c, MIR5148c-3p	MICRORNA5148C	MICRORNA5148c, osa-miRNA5148c	_		11	miRBASE accession: MI0018063.LM382896	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
13131	MIR5149	miR5149, osa-miR5149, osa-MIR5149, MIR5149-3p	MICRORNA5149	MICRORNA5149, osa-miRNA5149	_		3	miRBASE accession: MI0018064.LM382897	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13132	MIR5151	miR5151, osa-miR5151, osa-MIR5151, MIR5151-5p	MICRORNA5151	MICRORNA5151, osa-miRNA5151	_		5	miRBASE accession: MI0018066.LM382900	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13133	MIR5153	miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p	MICRORNA5153	MICRORNA5153, osa-miRNA5153	_		5	miRBASE accession: MI0018068.LM382901	 Tolerance and resistance - Disease resistance,  Other						GO:0050832 - defense response to fungus, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA	TO:0000074 - blast disease	
13134	MIR5154	miR5154, osa-miR5154, osa-MIR5154, MIR5154-3p	MICRORNA5154	MICRORNA5154, osa-miRNA5154	_		6	miRBASE accession: MI0018069.LM382902	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13135	MIR5155	miR5155, osa-miR5155, osa-MIR5155, MIR5155-5p	MICRORNA5155	MICRORNA5155, osa-miRNA5155	_		8	miRBASE accession: MI0018070.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
13136	MIR5156	miR5156, osa-miR5156, osa-MIR5156, MIR5156-5p	MICRORNA5156	MICRORNA5156, osa-miRNA5156	_		8	miRBASE accession: MI0018071.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13137	MIR5157A	miR5157a, osa-miR5157a, osa-MIR5157a, MIR5157a-5p, MIR5157a-3p	MICRORNA5157A	MICRORNA5157a, osa-miRNA5157a	_		8	miRBASE accession: MI0018072.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
13138	MIR5157B	miR5157b, osa-miR5157b, osa-MIR5157b, MIR5157b-5p, MIR5157b-3p	MICRORNA5157B	MICRORNA5157b, osa-miRNA5157b	_		8	miRBASE accession: MI0018073.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13139	MIR5158	miR5158, osa-miR5158, osa-MIR5158, MIR5158-3p	MICRORNA5158	MICRORNA5158, osa-miRNA5158	_		8	miRBASE accession: MI0018074.LM382903	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13140	MIR5160	miR5160, osa-miR5160, osa-MIR5160, MIR5160-3p	MICRORNA5160	MICRORNA5160, osa-miRNA5160	_		12	miRBASE accession: MI0018076.LM382905	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13141	MIR5161	miR5161, osa-miR5161, osa-MIR5161, MIR5161-3p	MICRORNA5161	MICRORNA5161, osa-miRNA5161	_		12	miRBASE accession: MI0018077.LM382906	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
13142	MIR5162	miR5162, osa-miR5162, osa-MIR5162, MIR5162-5p	MICRORNA5162	MICRORNA5162, osa-miRNA5162	_		12	miRBASE accession: MI0018078.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13143	MIR5337	miR5337, osa-miR5337, osa-MIR5337, osa-MIR5337a	MICRORNA5337	MICRORNA5337, osa-miRNA5337	_		4	miRBASE accession: MI0018519.LM382914	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13144	MIR5338	miR5338, osa-miR5338, osa-MIR5338	MICRORNA5338	MICRORNA5338, osa-miRNA5338	_		5	miRBASE accession: MI0018520.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13145	MIR5339	miR5339, osa-miR5339, osa-MIR5339	MICRORNA5339	MICRORNA5339, osa-miRNA5339	_		6	miRBASE accession: MI0018521.LM382915	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13146	MIR5340	miR5340, osa-miR5340, osa-MIR5340	MICRORNA5340	MICRORNA5340, osa-miRNA5340	_		2	miRBASE accession: MI0018522. LM382916.	 Tolerance and resistance - Stress tolerance,  Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0009409 - response to cold, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA	TO:0000303 - cold tolerance	
13148	NKD	IDD10, OsIDD10, OsNKD, OsZOS4-11, ZOS4-11	NAKED-ENDOSPERM	indeterminate domain 10, zinc-finger protein TFIIIA class of Oryza sativa 4-11, ZPT of Oryza sativa 4-11	INDETERMINATE DOMAIN PROTEIN 10	idd10, Osnkd, Osnkd-m1, Osnkd-m3, Osnkd-m6, Osnkd-m9	4	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os04g0566400	LOC_Os04g47860.8, LOC_Os04g47860.7, LOC_Os04g47860.6, LOC_Os04g47860.1, LOC_Os04g47860.2, LOC_Os04g47860.3, LOC_Os04g47860.4, LOC_Os04g47860.5				GO:0060359 - response to ammonium ion, GO:0009414 - response to water deprivation, GO:0003676 - nucleic acid binding, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0050832 - defense response to fungus, GO:0008270 - zinc ion binding, GO:0010105 - negative regulation of ethylene mediated signaling pathway, GO:0009873 - ethylene mediated signaling pathway	TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content, TO:0000227 - root length	
13149	IDD1	OsIDD1	INDETERMINATE DOMAIN 1	indeterminate domain 1	_		3		 Reproductive organ - Heading date	Os03g0197800	LOC_Os03g10140.1				GO:0048573 - photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding	TO:0002616 - flowering time, TO:0000137 - days to heading	
13150	IDD2	OsIDD2, ZOS1-04, OsZOS1-04	INDETERMINATE DOMAIN 2	indeterminate domain 2, zinc-finger protein TFIIIA class of Oryza sativa 1-02, ZPT of Oryza sativa 1-02	INDETERMINATE DOMAIN PROTEIN 2	osidd2	1	GO:2000652: regulation of secondary cell wall biogenesis.	 Vegetative organ - Culm,  Vegetative organ - Leaf	Os01g0195000	LOC_Os01g09850.3, LOC_Os01g09850.2, LOC_Os01g09850.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding	TO:0006036 - stem elongation, TO:0000731 - lignin content, TO:0000207 - plant height	PO:0007089 - stem elongation stage 
13151	IDD3	OsIDD3	INDETERMINATE DOMAIN 3	indeterminate domain 3	_		9			Os09g0555700	LOC_Os09g38340.3, LOC_Os09g38340.2, LOC_Os09g38340.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
13152	_	OsIDD4	_	indeterminate domain 4	_		2	LOC_Os02g45050 (Obsolete Locus; not found in MSU Rice Genome Annotation Project Release 7 data).									
13153	IDD5	OsIDD5	INDETERMINATE DOMAIN 5	indeterminate domain 5	_		7			Os07g0581366	LOC_Os07g39310.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
13154	IDD6	OsIDD6	INDETERMINATE DOMAIN 6	indeterminate domain 6	_		8		 Reproductive organ - Heading date	Os08g0554400	LOC_Os08g44050.4, LOC_Os08g44050.3, LOC_Os08g44050.2, LOC_Os08g44050.1				GO:0003676 - nucleic acid binding, GO:0048573 - photoperiodism, flowering, GO:0008270 - zinc ion binding	TO:0002616 - flowering time, TO:0000137 - days to heading	
13155	IDD7	OsIDD7	INDETERMINATE DOMAIN 7	indeterminate domain 7	_		2			Os02g0518500	LOC_Os02g31890.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
13156	IDD8	OsIDD8	INDETERMINATE DOMAIN 8	indeterminate domain 8	_		1			Os01g0242200	LOC_Os01g14010.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13157	IDD9	OsIDD9	INDETERMINATE DOMAIN 9	indeterminate domain 9	_		1			Os01g0935000	LOC_Os01g70870.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
13158	IDD11	OsIDD11	INDETERMINATE DOMAIN 11	indeterminate domain 11	_		1			Os01g0572300	LOC_Os01g39110.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13159	IDD12	OsIDD12, DLN211, OsDLN211	INDETERMINATE DOMAIN 12	indeterminate domain 12, DLN repressor 211, DLN motif protein 211	_		8			Os08g0467100	LOC_Os08g36390.1						
13160	IDD13	OsIDD13	INDETERMINATE DOMAIN 13	indeterminate domain 13	_		9			Os09g0449400	LOC_Os09g27650.2, LOC_Os09g27650.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
13161	LPA1	OsIDD14, LPA1, IDD14, OsLPA1, ZOS1-06, OsZOS1-06	LOOSE PLANT ARCHITECTURE1	indeterminate domain 14, Loose Plant Architecture1, zinc-finger protein TFIIIA class of Oryza sativa 1-06, ZPT of Oryza sativa 1-06	INDETERMINATE DOMAIN PROTEIN 14	lpa1	3	the functional ortholog of the AtIDD15/SHOOT GRAVITROPISM5 (SGR5) gene. JQ681528. 	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Other	Os03g0237250	LOC_Os03g13400.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0046872 - metal ion binding	TO:0000567 - tiller angle	
13162	LAP6	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6, OsCHS22, CHS22	LESS ADHESIVE POLLEN 6	polyketide synthase 1, polyketide synthase 21, stilbene synthase, Chalcone synthase 22		Ospks1, oslap6	10	D50576. FJ957881 (promoter sequence). OsPKS21 in Hu et al. 2017. OsPKS1 in Han et al. 2021, Han et al. 2023. an orthologue of Arabidopsis PKSA/LAP6. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os10g0484800	LOC_Os10g34360.1				GO:0080110 - sporopollenin biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009813 - flavonoid biosynthetic process, GO:0030639 - polyketide biosynthetic process, GO:0010584 - pollen exine formation, GO:0010208 - pollen wall assembly	TO:0000437 - male sterility	PO:0009046 - flower , PO:0009066 - anther , PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0025313 - tapetum 
13163	DFR2 	OsTKPR1, TKPR1, OsDFR2, OS-DFR2, OsDFR2A, DFR2A, OsCCRL1, CCRL1	DIHYDROFLAVONOL 4-REDUCTASE 2	tetraketide aplha-pyrone reductase 1, Dihydroflavonol-4-reductase 2, cinnamoyl coA reductase-like 1	DIHYDROFLAVONOL 4-REDUCTASE 2	Ostkpr1, ostkpr1-2, osccrl1	9	AF134807. TO:1000022: anther morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os09g0493500	LOC_Os09g32025.1, LOC_Os09g32020.1				GO:0005783 - endoplasmic reticulum, GO:0048653 - anther development, GO:0009809 - lignin biosynthetic process, GO:0043067 - regulation of programmed cell death, GO:0042335 - cuticle development, GO:0008610 - lipid biosynthetic process, GO:0009555 - pollen development, GO:0010584 - pollen exine formation, GO:0009698 - phenylpropanoid metabolic process, GO:0003824 - catalytic activity, GO:0010208 - pollen wall assembly, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0080110 - sporopollenin biosynthetic process	TO:0000245 - pollen free, TO:0000187 - anther color, TO:0000731 - lignin content, TO:0000723 - microsporocyte development trait, TO:0000437 - male sterility, TO:0000604 - fat and essential oil content, TO:0000214 - anther shape	PO:0020104 - leaf sheath , PO:0020048 - microspore , PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0025386 - cuticular wax , PO:0025385 - cutin , PO:0009071 - anther wall tapetum , PO:0001004 - anther development stage , PO:0009005 - root , PO:0025034 - leaf , PO:0009051 - spikelet , PO:0001007 - pollen development stage 
13164	_	YY1, OsLTPc2, OsLtpIII.2, LTP45	_	type C non-specific lipid transfer protein 2, non-specific lipid transfer protein c2, lipid transfer protein c2, LIPID TRANSFER PROTEIN45			9	D50575. O23810. BAA23617. LOC_Os09g35700.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os09g0525500	LOC_Os09g35700.1				GO:0048653 - anther development, GO:0005576 - extracellular region, GO:0005548 - phospholipid transporter activity, GO:0006649 - phospholipid transfer to membrane		
13165	_	OsPME1	_	pectin methylesterase 1	_		1		 Biochemical character	Os01g0254300	LOC_Os01g15039.1				GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity		
13166	PME2	OsPME2	PECTIN METHYLESTERASE 2	pectin methylesterase 2	PECTIN METHYLESTERASE 2		1		 Biochemical character	Os01g0311800	LOC_Os01g20980.1				GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity		
13167	PME3	OsPME3	PECTIN METHYLESTERASE 3	pectin methylesterase 3	PECTIN METHYLESTERASE 3		1		 Biochemical character	Os01g0312500	LOC_Os01g21034.1, LOC_Os01g21034.2, LOC_Os01g21034.3				GO:0043086 - negative regulation of catalytic activity, GO:0005737 - cytoplasm, GO:0004857 - enzyme inhibitor activity, GO:0009505 - plant-type cell wall, GO:0009624 - response to nematode, GO:0005886 - plasma membrane, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0048046 - apoplast		
13168	PME4	OsPME4	PECTIN METHYLESTERASE 4	pectin methylesterase 4, pectinesterase 11	PECTIN METHYLESTERASE 4		1	pectinesterase 11 in Tang et al. 2023.	 Biochemical character	Os01g0634600	LOC_Os01g44340.1				GO:0045490 - pectin catabolic process, GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity		
13169	PME5	OsPME5	PECTIN METHYLESTERASE 5	pectin methylesterase 5	PECTIN METHYLESTERASE 5		1		 Biochemical character	Os01g0743200	LOC_Os01g53990.1, LOC_Os01g53990.2				GO:0042545 - cell wall modification, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0045330 - aspartyl esterase activity		
13170	PME6	OsPME6, OsPME1	PECTIN METHYLESTERASE 6	pectin methylesterase 6	PECTIN METHYLESTERASE 6		1	OsPME1 in Fang et al. 2016, Leng et al. 2017, Hasegawa et al. 2023.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Leaf	Os01g0788400	LOC_Os01g57854.1				GO:0048653 - anther development, GO:0004857 - enzyme inhibitor activity, GO:0009555 - pollen development, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0045488 - pectin metabolic process, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0046169 - methanol biosynthetic process, GO:0030599 - pectinesterase activity, GO:0010150 - leaf senescence, GO:0052546 - cell wall pectin metabolic process, GO:0015996 - chlorophyll catabolic process, GO:0042545 - cell wall modification, GO:0009556 - microsporogenesis, GO:0009664 - plant-type cell wall organization	TO:0000245 - pollen free, TO:0000437 - male sterility, TO:0002668 - jasmonic acid content, TO:0000187 - anther color, TO:0000249 - leaf senescence, TO:0000531 - anther length, TO:0000214 - anther shape	PO:0001008 - C callose wall formation in pollen mother cells stage , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
13171	PME7	OsPME7	PECTIN METHYLESTERASE 7	pectin methylesterase 7	PECTIN METHYLESTERASE 7		1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0880300	LOC_Os01g65790.1				GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0050832 - defense response to fungus, GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity, GO:0005886 - plasma membrane, GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification	TO:0000074 - blast disease	
13172	PME8	OsPME8	PECTIN METHYLESTERASE 8	pectin methylesterase 8	PECTIN METHYLESTERASE 8		2		 Reproductive organ - panicle,  Biochemical character	Os02g0288100	LOC_Os02g18650.1				GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0010229 - inflorescence development, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
13173	PME9	OsPME9	PECTIN METHYLESTERASE 9	pectin methylesterase 9	PECTIN METHYLESTERASE 9		2		 Biochemical character	Os02g0783000	LOC_Os02g54190.1				GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0043086 - negative regulation of catalytic activity		
13174	PME10	OsPME10	PECTIN METHYLESTERASE 10	pectin methylesterase 10	PECTIN METHYLESTERASE 10		3		 Biochemical character	Os03g0300500	LOC_Os03g18860.1				GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0004857 - enzyme inhibitor activity		PO:0025281 - pollen 
13175	PME1	OsPME11, PME11, OsPME1	PECTIN METHYLESTERASE 1	pectin methylesterase 11, Pectin Methyl Esterase 1	PECTIN METHYLESTERASE 1		3	AY343494. OsPME1 in Kanneganti and Gupta (2009). OsPME11 in Yang et al. (2012), Kim et al. 2020.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0309400	LOC_Os03g19610.1				GO:0030599 - pectinesterase activity, GO:0008152 - metabolic process, GO:0005618 - cell wall, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity		PO:0025281 - pollen 
13176	PME12	OsPME12	PECTIN METHYLESTERASE 12	pectin methylesterase 12	PECTIN METHYLESTERASE 12		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0399000	LOC_Os03g28090.1				GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0042545 - cell wall modification		PO:0025281 - pollen 
13177	PME13	OsPME13	PECTIN METHYLESTERASE 13	pectin methylesterase 13	PECTIN METHYLESTERASE 13		4		 Biochemical character	Os04g0438400	LOC_Os04g35770.1				GO:0030599 - pectinesterase activity, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0005618 - cell wall		
13178	PME14	OsPME14	PECTIN METHYLESTERASE 14	pectin methylesterase 14	PECTIN METHYLESTERASE 14		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0458900	LOC_Os04g38560.1				GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0004857 - enzyme inhibitor activity		
13179	PME15	OsPME15	PECTIN METHYLESTERASE 15	pectin methylesterase 15	PECTIN METHYLESTERASE 15		4		 Biochemical character	Os04g0553500	LOC_Os04g46740.1, LOC_Os04g46740.2				GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall		
13180	PME16	OsPME16	PECTIN METHYLESTERASE 16	pectin methylesterase 16	PECTIN METHYLESTERASE 16		4		 Biochemical character	Os04g0641200	LOC_Os04g54850.1				GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity		
13181	PME17	OsPME17	PECTIN METHYLESTERASE 17	pectin methylesterase 17	PECTIN METHYLESTERASE 17		5		 Biochemical character	Os05g0361500	LOC_Os05g29790.1				GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity		
13182	PME18	OsPME18	PECTIN METHYLESTERASE 18	pectin methylesterase 18	PECTIN METHYLESTERASE 18		5		 Biochemical character	Os05g0521600	LOC_Os05g44600.1				GO:0045330 - aspartyl esterase activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0042545 - cell wall modification		
13183	PME19	OsPME19	PECTIN METHYLESTERASE 19	pectin methylesterase 19	PECTIN METHYLESTERASE 19		6		 Biochemical character	Os06g0193200	LOC_Os06g09340.1				GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall		
13184	PME20	OsPME20, OsEnS-109	PECTIN METHYLESTERASE 20	pectin methylesterase 20, endosperm-specific gene 109	PECTIN METHYLESTERASE 20		7		 Biochemical character	Os07g0607400	LOC_Os07g41650.2, LOC_Os07g41650.1				GO:0005618 - cell wall, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0045490 - pectin catabolic process, GO:0030599 - pectinesterase activity		
13185	PME21	OsPME21	PECTIN METHYLESTERASE 21	pectin methylesterase 21	PECTIN METHYLESTERASE 21		7		 Biochemical character	Os07g0655600	LOC_Os07g46190.1				GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity		
13186	PME22	OsPME22	PECTIN METHYLESTERASE 22	pectin methylesterase 22	PECTIN METHYLESTERASE 22		7		 Biochemical character	Os07g0675100	LOC_Os07g47830.1				GO:0004857 - enzyme inhibitor activity, GO:0009505 - plant-type cell wall, GO:0009624 - response to nematode, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0043086 - negative regulation of catalytic activity, GO:0048046 - apoplast, GO:0045330 - aspartyl esterase activity		
13187	PME23	OsPME23	PECTIN METHYLESTERASE 23	pectin methylesterase 23	PECTIN METHYLESTERASE 23		7		 Biochemical character	Os07g0691100	LOC_Os07g49100.1				GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall		
13188	PME24	OsPME24	PECTIN METHYLESTERASE 24	pectin methylesterase 24	PECTIN METHYLESTERASE 24		8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0220400	LOC_Os08g12410.1				GO:0005618 - cell wall, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0045330 - aspartyl esterase activity		
13189	PME25	OsPME25	PECTIN METHYLESTERASE 25	pectin methylesterase 25	PECTIN METHYLESTERASE 25		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0450100	LOC_Os08g34900.1				GO:0042545 - cell wall modification, GO:0004857 - enzyme inhibitor activity, GO:0005618 - cell wall, GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0010238 - response to proline, GO:0030599 - pectinesterase activity	TO:0000034 - chromium sensitivity	
13190	PME26	OsPME26	PECTIN METHYLESTERASE 26	pectin methylesterase 26	PECTIN METHYLESTERASE 26		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0450200	LOC_Os08g34910.1				GO:0043086 - negative regulation of catalytic activity, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0010238 - response to proline	TO:0000034 - chromium sensitivity	
13191	PME27	OsPME27	PECTIN METHYLESTERASE 27	pectin methylesterase 27	PECTIN METHYLESTERASE 27		9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0433700	LOC_Os09g26360.1				GO:0042545 - cell wall modification, GO:0004857 - enzyme inhibitor activity, GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall		
13192	PME28	OsPME28	PECTIN METHYLESTERASE 28	pectin methylesterase 28	PECTIN METHYLESTERASE 28		9		 Biochemical character	Os09g0571100	LOC_Os09g39760.1				GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall		
13193	PME29	OsPME29	PECTIN METHYLESTERASE 29	pectin methylesterase 29	PECTIN METHYLESTERASE 29		10		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0407000	LOC_Os10g26680.1, LOC_Os10g26680.2				GO:0042545 - cell wall modification, GO:0045488 - pectin metabolic process, GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity		
13194	PME30	OsPME30	PECTIN METHYLESTERASE 30	pectin methylesterase 30	PECTIN METHYLESTERASE 30		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0172100	LOC_Os11g07090.1				GO:0045330 - aspartyl esterase activity, GO:0043086 - negative regulation of catalytic activity, GO:0005618 - cell wall, GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification		
13195	PME31	OsPME31	PECTIN METHYLESTERASE 31	pectin methylesterase 31	PECTIN METHYLESTERASE 31		11		 Biochemical character	Os11g0192400	LOC_Os11g08750.1				GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045330 - aspartyl esterase activity		
13196	PME32	OsPME32, OsSTA270	PECTIN METHYLESTERASE 32	pectin methylesterase 32	PECTIN METHYLESTERASE 32		11	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0659600	LOC_Os11g43830.1				GO:0045330 - aspartyl esterase activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0042545 - cell wall modification		PO:0009066 - anther 
13197	PME33	OsPME33	PECTIN METHYLESTERASE 33	pectin methylesterase 33	PECTIN METHYLESTERASE 33		11		 Biochemical character	Os11g0683700	LOC_Os11g45720.1				GO:0045330 - aspartyl esterase activity, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0042545 - cell wall modification		PO:0025281 - pollen 
13198	PME34	OsPME34	PECTIN METHYLESTERASE 34	pectin methylesterase 34	PECTIN METHYLESTERASE 34		11		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0683800	LOC_Os11g45730.1				GO:0005618 - cell wall, GO:0048653 - anther development, GO:0009664 - plant-type cell wall organization, GO:0045488 - pectin metabolic process, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity	TO:0000437 - male sterility, TO:0000531 - anther length	PO:0001004 - anther development stage 
13199	PME35	OsPME35	PECTIN METHYLESTERASE 35	pectin methylesterase 35	PECTIN METHYLESTERASE 35		12		 Biochemical character	Os12g0563700	LOC_Os12g37660.1				GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity, GO:0005618 - cell wall, GO:0045330 - aspartyl esterase activity		PO:0025281 - pollen 
13200	_	ORK1, OsRLCK246, RLCK246	_	Oryza sativa Receptor-like Kinase1, Receptor-like Kinase 1, Receptor-like Cytoplasmic Kinase 246			8	AB188248. LOC_Os08g07890.	 Biochemical character	Os08g0176200	LOC_Os08g07890.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13201	MIR583C	miR583c, osa-miR583c, osa-MIR583c	MICRORNA583C	MICRORNA583c, osa-miRNA583c	_		10		 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13202	_	OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2	_	SUMO-conjugating enzyme 1, Ubiquitin-conjugating enzyme 1, E2 SUMO conjugation enzyme 1b, SUMO conjugation enzyme 1b, E2 protein SCE1b			10	OsSCE1b in Rosa et al. 2018.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character	Os10g0536000	LOC_Os10g39120.2, LOC_Os10g39120.1				GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0019725 - cellular homeostasis, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0016925 - protein sumoylation, GO:0019789 - SUMO ligase activity, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0009005 - root 
13203	SCE2	OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2	SUMO-CONJUGATING ENZYME 2	SUMO-conjugating enzyme 2, Ubiquitin-conjugating enzyme 2, E2 SUMO conjugation enzyme 1a, SUMO conjugation enzyme 1a, E2 protein SCE1a	SUMO-CONJUGATING ENZYME 2		3	D29718.OsSCE1a in Chaikam and Dale 2010, Rosa et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0123100	LOC_Os03g03130.2, LOC_Os03g03130.1				GO:0005654 - nucleoplasm, GO:0016925 - protein sumoylation, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0019789 - SUMO ligase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009738 - abscisic acid mediated signaling	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009005 - root 
13204	MIR601	miR601, osa-miR601, osa-MIR601, Osa-miR601	MICRORNA601	microRNA601, osa-miRNA601	_		8	miRBASE accession: MI0010708. osa-MIR2120 in miRBase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13205	MIR602A	miR602a, osa-miR602a, osa-MIR602a, Osa-miR602a	MICRORNA602A	microRNA602a, osa-miRNA602a	_		1	miRBASE accession: MI0010709. osa-MIR2121a in miRBase.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13206	MIR602B	miR602b, osa-miR602b, osa-MIR602b, Osa-miR602b	MICRORNA602B	microRNA602b, osa-miRNA602b	_		4	miRBASE accession: MI0010710. osa-MIR2121b in miRBase.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
13207	MIR602C	miR602c, osa-miR602c, osa-MIR602c, Osa-miR602c	MICRORNA602C	microRNA602c, osa-miRNA602c	_		8		 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
13208	MIR603	miR603, osa-miR603, osa-MIR603, Osa-miR603	MICRORNA603	microRNA603, osa-miRNA603	_		2	miRBASE accession: MI0010711. osa-MIR2122 in miRBase.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13209	MIR604A	miR604a, osa-miR604a, osa-MIR604a, Osa-miR604a	MICRORNA604A	microRNA604a, osa-miRNA604a	_		4		 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13210	MIR604B	miR604b, osa-miR604b, osa-MIR604b, Osa-miR604b	MICRORNA604B	microRNA604b, osa-miRNA604b	_		4		 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13211	MIR604C	miR604c, osa-miR604c, osa-MIR604c, Osa-miR604c	MICRORNA604C	microRNA604c, osa-miRNA604c	_		4		 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13212	MIR605A	miR605a, osa-miR605a, osa-MIR605a, Osa-miR605a	MICRORNA605A	microRNA605a, osa-miRNA605a	_		2		 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13213	MIR605B	miR605b, osa-miR605b, osa-MIR605b, Osa-miR605b	MICRORNA605B	microRNA605b, osa-miRNA605b	_		5		 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
13214	MIR605C	miR605c, osa-miR605c, osa-MIR605c, Osa-miR605c	MICRORNA605C	microRNA605c, osa-miRNA605c	_		7		 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13215	MIR605D	miR605d, osa-miR605d, osa-MIR605d, Osa-miR605d	MICRORNA605D	microRNA605d, osa-miRNA605d	_		7		 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
13216	MIR605E	miR605e, osa-miR605e, osa-MIR605e, Osa-miR605e	MICRORNA605E	microRNA605e, osa-miRNA605e	_		8		 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
13217	MIR605F	miR605f, osa-miR605f, osa-MIR605f, Osa-miR605f	MICRORNA605F	microRNA605f, osa-miRNA605f	_		9		 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
13218	MIR605G	miR605g, osa-miR605g, osa-MIR605g, Osa-miR605g	MICRORNA605G	microRNA605g, osa-miRNA605g	_		10		 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13219	MIR605H	miR605h, osa-miR605h, osa-MIR605h, Osa-miR605h	MICRORNA605H	microRNA605h, osa-miRNA605h	_		11		 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
13220	MIR605J	miR605j, osa-miR605j, osa-MIR605j, Osa-miR605j	MICRORNA605J	microRNA605j, osa-miRNA605j	_		11		 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
13221	MIR605I	miR605i, osa-miR605i, osa-MIR605i, Osa-miR605i	MICRORNA605I	microRNA605i, osa-miRNA605i	_		11		 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
13222	MIR606	miR606, osa-miR606, osa-MIR606, Osa-miR606	MICRORNA606	microRNA606, osa-miRNA606	_		3		 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
13223	WOX6	OsWOX6, Os WOX6, OsWOX12B, WOX12B	WUSCHEL-LIKE HOMEOBOX 6	WUSCHEL-related homeobox 6	WUSCHEL-LIKE HOMEOBOX 6		3	Q10M29, A2XG77. OsWOX12B in Cheng et al. 2014, Hu et al. 2017. GO:1990110: callus formation.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Other	Os03g0325600	LOC_Os03g20910.1, LOC_Os03g20910.2				GO:0009739 - response to gibberellin stimulus, GO:0007275 - multicellular organismal development, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent, GO:0045165 - cell fate commitment, GO:0031099 - regeneration, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0009629 - response to gravity, GO:0009733 - response to auxin stimulus, GO:0043565 - sequence-specific DNA binding, GO:0009790 - embryonic development, GO:0009630 - gravitropism, GO:0009735 - response to cytokinin stimulus	TO:0000567 - tiller angle, TO:0002693 - gravity response trait, TO:0000163 - auxin sensitivity, TO:0000620 - embryo development trait, TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance	PO:0008039 - stem base , PO:0001003 - formation of the leaf founder cells stage , PO:0000065 - phloem pole pericycle cell , PO:0000016 - lateral root primordium 
13224	DWT1	OsWOX7, Os WOX7, WOX7, OsWOX9A, DWT1/WOX9A, OsDWT1, WOX9A	DWARF TILLER 1	DWARF TILLER1, WUSCHEL-related homeobox 7, WUSCHEL-LIKE HOMEOBOX 7	WUSCHEL-LIKE HOMEOBOX 7	dwt1	1	Q0JKK6. OsWOX9A in Cheng et al. 2014, Fang et al. 2020. 	 Vegetative organ - Culm,  Reproductive organ - panicle,  Other	Os01g0667400	LOC_Os01g47710.1				GO:0010336 - gibberellic acid homeostasis, GO:0009690 - cytokinin metabolic process, GO:0009826 - unidimensional cell growth, GO:0051301 - cell division, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0009736 - cytokinin mediated signaling, GO:0006351 - transcription, DNA-dependent, GO:0010476 - gibberellin-mediated signaling, GO:0007275 - multicellular organismal development, GO:0009790 - embryonic development, GO:0010229 - inflorescence development, GO:0003700 - transcription factor activity	TO:0001005 - basal tiller length, TO:0000077 - shoot anatomy and morphology trait, TO:0000396 - grain yield, TO:0006036 - stem elongation, TO:0000621 - inflorescence development trait, TO:0000207 - plant height, TO:0000620 - embryo development trait, TO:0000145 - internode length, TO:0006032 - panicle size	PO:0001083 - inflorescence development stage , PO:0007089 - stem elongation stage 
13225	WOX8	OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B	WUSCHEL-LIKE HOMEOBOX 8	WUSCHEL-related homeobox 8	WUSCHEL-LIKE HOMEOBOX 8	oswox13-1	1	Q5QMM3. AM234755. OsWOX13 in Nardmann and Werr 2006 and Nardmann et al. 2007, Minh-Thu et al. 2018, Kim et al. 2021. OsWOX9B in Cheng et al. 2014, Wang et al. 2023. the putative rice ortholog of AtWOX14. GO:2000028: regulation of photoperiodism, flowering. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Other,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date	Os01g0818400	LOC_Os01g60270.1, LOC_Os01g60270.2				GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0048573 - photoperiodism, flowering, GO:0003700 - transcription factor activity, GO:0007275 - multicellular organismal development, GO:0009409 - response to cold	TO:0000137 - days to heading, TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0002616 - flowering time, TO:0000734 - grain length, TO:0000449 - grain yield per plant, TO:0000303 - cold tolerance, TO:0000382 - 1000-seed weight	PO:0025527 - shoot system development stage , PO:0009005 - root , PO:0009015 - portion of vascular tissue , PO:0020104 - leaf sheath 
13226	WOX10	OsWOX10, Os WOX10, OsWOX11/12, OsWOX11	WUSCHEL-LIKE HOMEOBOX 10	WUSCHEL-related homeobox 10	WUSCHEL-LIKE HOMEOBOX 10	Oswox10	8	Q6Z3L4. AM234754. OsWOX11/12 in Nardmann and Werr 2006 and Nardmann et al. 2007. OsWOX11 in Cheng et al. 2014. GO:2000023: regulation of lateral root development.	 Other,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os08g0242400	LOC_Os08g14400.1				GO:0009733 - response to auxin stimulus, GO:0010311 - lateral root formation, GO:0048527 - lateral root development, GO:0009611 - response to wounding, GO:0043565 - sequence-specific DNA binding, GO:0009735 - response to cytokinin stimulus, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0007275 - multicellular organismal development, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance, TO:0000306 - root thickness, TO:0000167 - cytokinin sensitivity	PO:0007520 - root development stage , PO:0000016 - lateral root primordium , PO:0025164 - root epidermal cell 
13227	WOX11	OsWOX11, Os WOX11, OsWOX12A	WUSCHEL-LIKE HOMEOBOX 11	WUSCHEL-related homeobox 11	WUSCHEL-LIKE HOMEOBOX 11	wox11-1, wox11, Oswox11-1, oswox11, oswox11-1, oswox11-2, oswox11-3, oswox11-4	7	Q0D3I7. OsWOX12A in Cheng et al. 2014. GO:1990110: callus formation. PO:0025592: vascular leaf founder cell. TO:0000975: grain width. GO:0090567: reproductive shoot system development. GO:2000280: regulation of root development. TO:0000975: grain width.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Other,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0684900 	LOC_Os07g48560.1				GO:0045454 - cell redox homeostasis, GO:0003700 - transcription factor activity, GO:0009736 - cytokinin mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0009735 - response to cytokinin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0051365 - cellular response to potassium ion starvation, GO:0051302 - regulation of cell division, GO:0048364 - root development, GO:0009409 - response to cold, GO:0009733 - response to auxin stimulus, GO:0009629 - response to gravity, GO:0009739 - response to gibberellin stimulus, GO:0009630 - gravitropism, GO:0009723 - response to ethylene stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0006950 - response to stress, GO:0045165 - cell fate commitment, GO:0031099 - regeneration, GO:0030307 - positive regulation of cell growth, GO:0048367 - shoot development, GO:0009926 - auxin polar transport	TO:0000734 - grain length, TO:0000346 - tiller number, TO:0000168 - abiotic stress trait, TO:0000167 - cytokinin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000654 - shoot development trait, TO:0000276 - drought tolerance, TO:0000227 - root length, TO:0002692 - root meristem development, TO:0000207 - plant height, TO:0001006 - adventitious root number, TO:0002693 - gravity response trait, TO:0000567 - tiller angle, TO:0000166 - gibberellic acid sensitivity, TO:0000656 - root development trait, TO:0000303 - cold tolerance, TO:0002685 - crown root number, TO:0000163 - auxin sensitivity, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000173 - ethylene sensitivity	PO:0000043 - crown root , PO:0006085 - root meristem , PO:0000016 - lateral root primordium , PO:0007520 - root development stage , PO:0025527 - shoot system development stage , PO:0007518 - crown root emergence stage , PO:0001003 - formation of the leaf founder cells stage , PO:0006023 - bundle sheath , PO:0008039 - stem base , PO:0000025 - root tip , PO:0000065 - phloem pole pericycle cell 
13228	AAO	OsAAO, OsAAO1, AAO1	ABA ALDEHYDE OXIDASE	ABA Aldehyde Oxidase	ABA ALDEHYDE OXIDASE		7	AAO1 in Qin et al. 2020.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0164900	LOC_Os07g07050.1, LOC_Os07g07050.2				GO:0051607 - defense response to virus, GO:0016491 - oxidoreductase activity	TO:0000148 - viral disease resistance	
13230	HMA7	osHMA7, osHMA7	HEAVY METAL ATPASE 7	heavy metal ATPase 7, heavy metal P-Type ATPase 7	HEAVY METAL ATPASE 7		8	GO:0035434:copper ion transmembrane transport.	 Biochemical character						GO:0019829 - cation-transporting ATPase activity, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0009767 - photosynthetic electron transport chain, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0005375 - copper ion transmembrane transporter activity		
13231	ECA1	osECA1, OsECA1	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE1	endoplasmic reticulum-type Ca2+ P-Type ATPase 1	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE1		3	LOC_Os03g17310.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0281600	LOC_Os03g17310.1				GO:0009628 - response to abiotic stimulus, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0005524 - ATP binding, GO:0030026 - cellular manganese ion homeostasis, GO:0019829 - cation-transporting ATPase activity, GO:0016021 - integral to membrane, GO:0010042 - response to manganese ion, GO:0006828 - manganese ion transport, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance	
13232	ECA2	osECA2	CA2+-ATPASE 2	endoplasmic reticulum-type Ca2+ P-Type ATPase 2	_		5		 Biochemical character								
13233	ACA1	osACA1, OsACA1, OsACA3, OsPM3ATP2	CA2+-ATPASE 1	Ca2+ P-Type ATPase 1	CA2+-ATPASE 1		3	OsACA3 in Singh et al. 2013.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0203700	LOC_Os03g10640.1				GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding	TO:0000276 - drought tolerance	
13234	ACA2	osACA2, OsACA10, OsPM12ATP	CA2+-ATPASE 2	Ca2+ P-Type ATPase 2	CA2+-ATPASE 2		12	Q2QMX9. OsACA10 in Singh et al. 2013.	 Biochemical character	Os12g0586600	LOC_Os12g39660.1				GO:0005789 - endoplasmic reticulum membrane, GO:0009706 - chloroplast inner membrane, GO:0016021 - integral to membrane, GO:0005388 - calcium-transporting ATPase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0005886 - plasma membrane		
13235	ACA3	osACA3, OsACA4, OsPM3ATPB	CA2+-ATPASE 3	Ca2+ P-Type ATPase 3	CA2+-ATPASE 3		3	Q6ATV4. OsACA4 in Singh et al. 2013.	 Biochemical character	Os03g0616400	LOC_Os03g42020.1				GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0009706 - chloroplast inner membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity		
13236	ACA4	osACA4, OsACA8, ACA8, OsACA4	CA2+-ATPASE 4	Ca2+ P-Type ATPase 4, vacuolar Ca2+-ATPase 4	CA2+-ATPASE 4		11	Q2RAS0. OsACA8 in Singh et al. 2013, Luo et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0140400	LOC_Os11g04460.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009507 - chloroplast, GO:0009705 - plant-type vacuole membrane, GO:0005388 - calcium-transporting ATPase activity, GO:0043069 - negative regulation of programmed cell death, GO:0009651 - response to salt stress, GO:0009624 - response to nematode, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0042742 - defense response to bacterium, GO:0055081 - anion homeostasis	TO:0006001 - salt tolerance	
13237	ACA5	osACA5, OsACA9, ACA9, OsACA5, OsPM12ATP4, PM12ATP4	CA2+-ATPASE 5	Ca2+ P-Type ATPase 5, vacuolar Ca2+-ATPase 5	CA2+-ATPASE 5		12	Q2QY12. OsACA9 in Singh et al. 2013, Luo et al. 2022.	 Biochemical character	Os12g0136900	LOC_Os12g04220.1				GO:0043069 - negative regulation of programmed cell death, GO:0055081 - anion homeostasis, GO:0046872 - metal ion binding, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane, GO:0009651 - response to salt stress, GO:0009624 - response to nematode, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity		
13238	ACA6	osACA6, OsACA1, OsACA6, OsPM1ATPaseII, ACA3	CA2+-ATPASE 6	Ca2+ P-Type ATPase 6, vacuolar Ca2+-ATPase 6, auto-inhibited Ca2+-ATPase 3	CA2+-ATPASE 6		1	Q8RUN1. OsACA1 in Singh et al. 2013. ACA3 in Treesubsuntorn and Thiravetyan 2019. Calcium-transporting ATPase (CaC) in Hu et al. 2015. TO:0006059: cadmium content trait. TO:0020096: mineral and ion transport trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0939100	LOC_Os01g71240.1				GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding, GO:0015691 - cadmium ion transport, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000429 - salt sensitivity	
13239	ACA7	osACA7, OsACA6, ACA6, OsACA7, OsPM5ATP4, PM5ATP4	CA2+-ATPASE 7	Ca2+ P-Type ATPase 7, vacuolar Ca2+-ATPase 7	CA2+-ATPASE 7		5	Q65X71. OsACA6 in Singh et al. 2013, Luo et al. 2022.	 Biochemical character	Os05g0495600	LOC_Os05g41580.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0005388 - calcium-transporting ATPase activity		
13240	ACA8	osACA8, OsACA7, ACA13	CA2+-ATPASE 8	Ca2+ P-Type ATPase 8, auto-inhibited Ca2+-ATPase 13	CA2+-ATPASE 8		10	OsACA7 in Singh et al. 2013. ACA13 in Treesubsuntorn and Thiravetyan 2019. TO:0006059: cadmium content trait. TO:0020096: mineral and ion transport trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0418100	LOC_Os10g28240.1				GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0015691 - cadmium ion transport, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
13241	ACA9	osACA9, OsACA2, ACA2, OsPM2ATP9	AUTOINHIBITED CA2+-ATPASE 9	Ca2+ P-Type ATPase 9, CA2+-ATPASE 9, Autoinhibited Ca2+-ATPase 9	AUTOINHIBITED CA2+-ATPASE 9	Osaca9, aca9#1, aca9#2	12	OsACA2 in Singh et al. 2013, Luo et al. 2022. GO:1900055: regulation of leaf senescence. GO:0035420: MAPK cascade involved in innate immune response. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1900056: negative regulation of leaf senescence.	 Character as QTL - Yield and productivity,  Biochemical character,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Plant growth activity	Os02g0176700	LOC_Os02g08010.1, LOC_Os02g08014.1, LOC_Os02g08018.1				GO:0002679 - respiratory burst during defense response, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0010150 - leaf senescence, GO:0046872 - metal ion binding, GO:0005388 - calcium-transporting ATPase activity, GO:0042742 - defense response to bacterium	TO:0000399 - grain thickness, TO:0000346 - tiller number, TO:0000734 - grain length, TO:0000449 - grain yield per plant, TO:0000357 - growth and development trait, TO:0000370 - leaf width, TO:0000326 - leaf color, TO:0001027 - net photosynthetic rate, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000396 - grain yield, TO:0002757 - flag leaf length, TO:0000447 - filled grain number, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
13242	ACA10	osACA10	CA2+-ATPASE 10	Ca2+ P-Type ATPase 10	CA2+-ATPASE 10		8		 Biochemical character						GO:0046872 - metal ion binding, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
13243	ACA11	osACA11, OsACA6, OsACA5, OsPM4ATP8	CA2+-ATPASE 11	Ca2+ P-Type ATPase 11	CA2+-ATPASE 11		4	LOC_Os04g51610. OsACA6 in Huda et al. 2013 and 2014. OsACA5 in Singh et al. 2013.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0605500	LOC_Os04g51610.1, LOC_Os04g51610.3				GO:0005388 - calcium-transporting ATPase activity, GO:0009414 - response to water deprivation, GO:0007338 - single fertilization, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009624 - response to nematode, GO:0005886 - plasma membrane, GO:0048367 - shoot development, GO:0048281 - inflorescence morphogenesis, GO:0046872 - metal ion binding, GO:0009555 - pollen development, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
13244	ALA1	osALA1	AMINOPHOSPHOLIPID ATPASE 1	aminophospholipid P-Type ATPase 1	AMINOPHOSPHOLIPID ATPASE 1		3		 Biochemical character	Os03g0334700	LOC_Os03g21680.1, LOC_Os03g21680.2, LOC_Os03g21680.3, LOC_Os03g21680.4				GO:0004012 - phospholipid-translocating ATPase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0005388 - calcium-transporting ATPase activity, GO:0000287 - magnesium ion binding		
13245	ALA2	osALA2	AMINOPHOSPHOLIPID ATPASE 2	aminophospholipid P-Type ATPase 2	AMINOPHOSPHOLIPID ATPASE 2		1		 Biochemical character	Os01g0277600	LOC_Os01g17010.1				GO:0000287 - magnesium ion binding, GO:0004012 - phospholipid-translocating ATPase activity, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
13246	ALA3	osALA3	AMINOPHOSPHOLIPID ATPASE 3	aminophospholipid P-Type ATPase 3	AMINOPHOSPHOLIPID ATPASE 3		1		 Biochemical character						GO:0000287 - magnesium ion binding, GO:0004012 - phospholipid-translocating ATPase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0019829 - cation-transporting ATPase activity		
13247	ALA4	osALA4	AMINOPHOSPHOLIPID ATPASE 4	aminophospholipid P-Type ATPase 4	AMINOPHOSPHOLIPID ATPASE 4		5		 Biochemical character						GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0019829 - cation-transporting ATPase activity, GO:0000287 - magnesium ion binding, GO:0004012 - phospholipid-translocating ATPase activity		
13248	ALA5	osALA5	AMINOPHOSPHOLIPID ATPASE 5	aminophospholipid P-Type ATPase 5	AMINOPHOSPHOLIPID ATPASE 5		6		 Biochemical character						GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0019829 - cation-transporting ATPase activity, GO:0000287 - magnesium ion binding, GO:0004012 - phospholipid-translocating ATPase activity, GO:0005524 - ATP binding		
13249	ALA6	osALA6	AMINOPHOSPHOLIPID ATPASE 6	aminophospholipid P-Type ATPase 6	AMINOPHOSPHOLIPID ATPASE 6		8		 Biochemical character						GO:0019829 - cation-transporting ATPase activity, GO:0004012 - phospholipid-translocating ATPase activity, GO:0005524 - ATP binding, GO:0000287 - magnesium ion binding, GO:0016021 - integral to membrane		
13250	ALA7	osALA7	AMINOPHOSPHOLIPID ATPASE 7	aminophospholipid P-Type ATPase 7	AMINOPHOSPHOLIPID ATPASE 7		6		 Biochemical character						GO:0019829 - cation-transporting ATPase activity, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane, GO:0004012 - phospholipid-translocating ATPase activity		
13251	ALA8	osALA8	AMINOPHOSPHOLIPID ATPASE 8	aminophospholipid P-Type ATPase 8	AMINOPHOSPHOLIPID ATPASE 8		10		 Biochemical character								
13252	ALA9	osALA9	AMINOPHOSPHOLIPID ATPASE 9	aminophospholipid P-Type ATPase 9	AMINOPHOSPHOLIPID ATPASE 9		4		 Biochemical character								
13253	ALA10	osALA10	AMINOPHOSPHOLIPID ATPASE 10	aminophospholipid P-Type ATPase 10	AMINOPHOSPHOLIPID ATPASE 10		4		 Biochemical character								
13254	P5	osP5	P-TYPE ATPASE 5	P-Type ATPase 5	P-TYPE ATPASE 5		5		 Biochemical character								
13255	CYCA1;2	CycA1;1, CycA1;os;1, Orysa;CycA1;2	CYCLIN-A1-2	A-type cyclin 1;2	CYCLIN-A1-2		1		 Biochemical character								
13256	CYCA3;1	CycA3;1, CycA3;os;1, Orysa;CycA3;1, CYCA2.2	CYCLIN-A3-1	A-type cyclin 3;1	CYCLIN-A3-1		3	Q75I54. CYCA2.2 in Zhang et al. 2019.	 Biochemical character	Os03g0607600	LOC_Os03g41100.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0005737 - cytoplasm		
13257	CYCA3;2	OsCYCA3;2, CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1, CYCA2;1	CYCLIN-A3-2	A-type cyclin 3;2	CYCLIN-A3-2		12	Q2QN26. CYCA2.1 in Xu et al. 2014. CYCA2;1 in Guo et al. 2019, Zhang et al. 2019.	 Biochemical character	Os12g0581800	LOC_Os12g39210.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0051301 - cell division		
13258	CYCA3;3	CycA3;3, CycA3;os;3, Orysa;CycA3;3	CYCLIN-A3-3	A-type cyclin 3;3	CYCLIN-A3-3		3		 Biochemical character								
13259	CYCA3;4	CycA3;4, CycA3;os;4, Orysa;CycA3;4	CYCLIN-A3-4	A-type cyclin 3;4	CYCLIN-A3-4		3		 Biochemical character								
13260	CYCB1;1	CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm, OsCYCB1;4	CYCLIN-B1-1	B-type cyclin 1;1	CYCLIN-B1-1		1	Q0JIF2. OsCYCB1;4 in Ikramet al. 2021.	 Biochemical character,  Seed - Morphological traits - Endosperm	Os01g0805600	LOC_Os01g59120.1				GO:0051301 - cell division, GO:0007088 - regulation of mitosis, GO:0009960 - endosperm development, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity	TO:0000575 - endosperm related trait, TO:0000587 - endosperm quality, TO:0000653 - seed development trait	
13261	CYCB1;2	CycB1;2, CycB1;os;2, Orysa;CycB1;2	CYCLIN-B1-2	B-type cyclin 1;2	CYCLIN-B1-2		5	Q0DH40.	 Biochemical character	Os05g0493500	LOC_Os05g41390.1				GO:0001558 - regulation of cell growth, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0010332 - response to gamma radiation, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0007049 - cell cycle, GO:0051301 - cell division		
13262	CYCB1;3	CycB1;3, CycB1;os;3, Orysa;CycB1;3	CYCLIN-B1-3	B-type cyclin 1;3	CYCLIN-B1-3		2		 Biochemical character								
13263	CYCD1;1	CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1, OsCYCD2;1, CYCD2;1	CYCLIN-D1-1	D-type cyclin 1;1, Cyclin-D2-1	CYCLIN-D1-1		9	Q0J233. Cyclin-D2-1 in Ogasawara et al. 2021. OsCYCD2;1 in Jiang et al. 2024.	 Biochemical character	Os09g0382300	LOC_Os09g21450.1				GO:0007049 - cell cycle, GO:0045840 - positive regulation of mitosis, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus		PO:0009038 - palea , PO:0009030 - carpel , PO:0020103 - flag leaf , PO:0009037 - lemma , PO:0009029 - stamen 
13264	CYCD1;2	CycD1;2, CycD1;os;2, Orysa;CycD1;2, Orysa;CYCD1;2, OsCYCD1;1, CYCD1;1	CYCLIN-D1-2	D-type cyclin 1;2	CYCLIN-D1-2		6	Q67V81. OsCYCD1;1 in Jiang et al. 2024.	 Biochemical character	Os06g0236600	LOC_Os06g12980.1				GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0045787 - positive regulation of cell cycle, GO:0045840 - positive regulation of mitosis, GO:0051301 - cell division		
13265	CYCD2;2	CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2, CyclinD3;1, OsCYCD2;1, OsCYCD3;1, CYCD3;1	CYCLIN-D2-2	D-type cyclin 2;2, Cyclin D3;1	CYCLIN-D2-2		6	Q69QB8. CyclinD3;1 in Ni et al. 2019. OsCYCD2;1 in Zhang et al. 2020. OsCYCD3;1 in Jiang et al. 2024.	 Biochemical character	Os06g0217900	LOC_Os06g11410.2, LOC_Os06g11410.1				GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0045840 - positive regulation of mitosis, GO:0005634 - nucleus		PO:0007631 - plant embryo stage , PO:0009051 - spikelet , PO:0025034 - leaf 
13266	CYCD2;3	CycD2;3, CycD2;os;3, Orysa;CycD2;3, Orysa;CYCD2;3, OsCYCD2;3	CYCLIN-D2-3	D-type cyclin 2;3	CYCLIN-D2-3		3	Q10K98.	 Biochemical character	Os03g0392000	LOC_Os03g27420.1				GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0051301 - cell division, GO:0045840 - positive regulation of mitosis		
13267	CYCD4;2	CycD4;2, CycD4;os;2, Orysa;CycD4;2, Orysa;CYCD4;2, OsCYCD4;2	CYCLIN-D4-2	D-type cyclin 4;2	CYCLIN-D4-2		8	Q4KYM5.	 Biochemical character	Os08g0479300	LOC_Os08g37390.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus, GO:0045840 - positive regulation of mitosis, GO:0007049 - cell cycle, GO:0051301 - cell division		PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
13268	CYCD3;1	CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1, CycD3-1, OsCycD3-1, OsCYCD3;2, CYCD3;2	CYCLIN-D3-1	D-type cyclin 3;1	CYCLIN-D3-1		9	Q0J3H7. OsCYCD3;2 in Jiang et al. 2024.	 Biochemical character	Os09g0111100	LOC_Os09g02360.1				GO:0045840 - positive regulation of mitosis, GO:0051301 - cell division, GO:0007049 - cell cycle		PO:0009005 - root , PO:0025034 - leaf 
13269	CYCD5;1	CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2, CycD5;2	CYCLIN-D5-1	D-type cyclin 5;1	CYCLIN-D5-1		12	Q2QMW1. OsCYCD5;2 in Zhao et al. 2014, Zheng at al. 2022, Wang et al. 2023, Jiang et al. 2024.	 Biochemical character,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os12g0588800	LOC_Os12g39830.1				GO:0051726 - regulation of cell cycle, GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0046686 - response to cadmium ion, GO:0045840 - positive regulation of mitosis, GO:0005634 - nucleus	TO:0000397 - grain size	PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0007631 - plant embryo stage 
13270	CYCD5;2	CycD5;2, CycD5;os;2, Orysa;CycD5;2, Orysa;CYCD5;2, OsCYCD5;1, CYCD5;1	CYCLIN-D5-2	D-type cyclin 5;2	CYCLIN-D5-2		3	Q0DQA9. OsCYCD5;1 in Jiang et al. 2024.	 Biochemical character	Os03g0617500	LOC_Os03g42070.1				GO:0005634 - nucleus, GO:0045840 - positive regulation of mitosis, GO:0007049 - cell cycle, GO:0051301 - cell division		PO:0009005 - root 
13271	CYCD5;4	CycD5;4, CycD5;os;4, Orysa;CycD5;4	CYCLIN-D5-4	D-type cyclin 5;4	CYCLIN-D5-4		3		 Biochemical character								
13272	CYCD6;1	CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1, OsCYCD6;1	CYCLIN-D6-1	D-type cyclin 6;1	CYCLIN-D6-1		7	Q69S43.	 Biochemical character	Os07g0556000	LOC_Os07g37010.1, LOC_Os07g37010.2				GO:0051781 - positive regulation of cell division, GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0045840 - positive regulation of mitosis		PO:0007631 - plant embryo stage , PO:0009051 - spikelet , PO:0025034 - leaf 
13273	CYCD7;1	CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3, OsCYCD7;1	CYCLIN-D7-1	D-type cyclin 7;1	CYCLIN-D7-1		11	Q53MB7. OsCYCD3 in Hua et al. 2015.	 Biochemical character	Os11g0706801	LOC_Os11g47950.1				GO:0051782 - negative regulation of cell division, GO:0005634 - nucleus, GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity	
13274	CYCL1;1	CycL1;1, CycL1;os;1, Orysa;CycL1;1	CYCLIN-L1-1	L-type cyclin 1;1	CYCLIN-L1-1		1	Q9AS36.	 Biochemical character	Os01g0377500	LOC_Os01g27940.1, LOC_Os01g27940.2				GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0006396 - RNA processing, GO:0051301 - cell division, GO:0007049 - cell cycle		
13275	CYCT1;1	CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1	CYCLIN-T1-1	T-type cyclin 1;1	CYCLIN-T1-1		2	Q6Z7H3.	 Biochemical character	Os02g0438200	LOC_Os02g24190.1, LOC_Os02g24190.2, LOC_Os02g24190.3				GO:0006355 - regulation of transcription, DNA-dependent, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13276	CYCT1;2	CycT1;2, CycT1;os;2, Orysa;CycT1;2	CYCLIN-T1-2	T-type cyclin 1;2	CYCLIN-T1-2		2		 Biochemical character								
13277	CYCT1;3	CycT1;3, CycT1;os;3, Orysa;CycT1;3	CYCLIN-T1-3	T-type cyclin 1;3	CYCLIN-T1-3		2	Q0E474.	 Biochemical character	Os02g0133000	LOC_Os02g04010.1, LOC_Os02g04010.2, LOC_Os02g04010.3, LOC_Os02g04010.4				GO:0007049 - cell cycle, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0051301 - cell division		
13278	CYCT1;4	CycT1;4, CycT1;os;4, Orysa;CycT1;4	CYCLIN-T1-4	T-type cyclin 1;4	CYCLIN-T1-4		11	Q2RAC5.	 Biochemical character	Os11g0157100	LOC_Os11g05850.2				GO:0005634 - nucleus, GO:0051301 - cell division, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13279	CYCT1;5	CycT1;5, CycT1;os;5, Orysa;CycT1;5	CYCLIN-T1-5	T-type cyclin 1;5	CYCLIN-T1-5		11		 Biochemical character								
13280	CYCT1;6	CycT1;6, CycT1;os;6, Orysa;CycT1;6	CYCLIN-T1-6	T-type cyclin 1;6	CYCLIN-T1-6		12	Q2QQS5.	 Biochemical character	Os12g0485400	LOC_Os12g30020.1, LOC_Os12g30020.2				GO:0048366 - leaf development, GO:0005634 - nucleus, GO:0010090 - trichome morphogenesis, GO:0009615 - response to virus, GO:0050792 - regulation of viral reproduction, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0009908 - flower development, GO:0051301 - cell division, GO:0007049 - cell cycle		
13281	CYCU1;1	CycU1;1, CycU1;os;1, Orysa;CycU1;1, OsCYCP2;1, CYCP2;1	CYCLIN-U1-1	U-type cyclin 1;1, P-type cyclin 2;1	CYCLIN-U1-1		4	Q0J9W0. OsCYCP2;1 in Deng et al. 2014, Li et al. 2024. a PHO80 homologous protein. Os04g0628700 (in Rap1 (build3) ,Rap2 (build4)).	 Biochemical character	Os04g0628900	LOC_Os04g53680.1				GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13282	CYCU2;1	CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2	CYCLIN-U2-1	U-type cyclin 2;1, P-type cyclin 3;1, U-type cyclin 2	CYCLIN-U2-1	CYC U2m	4	Q7FAT5. LOC_Os04g46660. OsCYCP3;1 in Deng et al. 2014. a PHO80 homologous protein.	 Biochemical character,  Vegetative organ - Culm	Os04g0552300	LOC_Os04g46660.1				GO:0009742 - brassinosteroid mediated signaling, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle	TO:0000544 - mesocotyl length, TO:0002677 - brassinosteroid sensitivity	
13283	CYCU3;1	CycU3;1, CycU3;os;1, Orysa;CycU3;1, OsCYCP1;1	CYCLIN-U3-1	U-type cyclin 3;1, P-type cyclin 1;1	CYCLIN-U3-1		5	Q75HV0. LOC_Os05g33040. OsCYCP1;1 in Deng et al. 2014. a PHO80 homologous protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0398000	LOC_Os05g33040.1, LOC_Os05g33040.2, LOC_Os05g33040.3				GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0051301 - cell division, GO:0007049 - cell cycle		
13284	CYCU4;3	CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1, CyclinD4;1	CYCLIN-U4-3	U-type cyclin 4;3, P-type cyclin 4;1	CYCLIN-U4-3		10	Q7XC35. OsCYCP4;1 in Deng et al. 2014. a PHO80 homologous protein. CyclinD4;1 in Ni et al. 2019.	 Biochemical character	Os10g0563900	LOC_Os10g41430.1				GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13285	CYCU4;4	CycU4;4, CycU4;os;4, Orysa;CycU4;4, OsCYCP4;2	CYCLIN-U4-4	U-type cyclin 4;4, P-type cyclin 4;2	CYCLIN-U4-4		2	LOC_Os02g43550. OsCYCP4;2 in Deng et al. 2014. a PHO80 homologous protein.	 Biochemical character	Os02g0652000	LOC_Os02g43550.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity		
13286	CYCU4;5	CycU4;5, CycU4;os;5, Orysa;CycU4;5	CYCLIN-U4-5	U-type cyclin 4;5	CYCLIN-U4-5		2		 Biochemical character								
13287	CYCU4;1	CycU4;1, CycU4;os;1, Orysa;CycU4;1	CYCLIN-U4-1	U-type cyclin 4;1	CYCLIN-U4-1		10		 Biochemical character						GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0007049 - cell cycle		
13288	CYCU4;2	CycU4;2, CycU4;os;2, Orysa;CycU4;2	CYCLIN-U4-2	U-type cyclin 4;2	CYCLIN-U4-2		4		 Biochemical character								
13289	CDKB;1	CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1	CYCLIN-DEPENDENT KINASE B;1	B1-type cyclin-dependent kinase	CYCLIN-DEPENDENT KINASE B;1		1	Q8L4P8. AB239918.	 Biochemical character	Os01g0897000	LOC_Os01g67160.1				GO:0005737 - cytoplasm, GO:0048825 - cotyledon development, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0010376 - stomatal complex formation, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0009826 - unidimensional cell growth, GO:0005634 - nucleus		PO:0020094 - plant egg cell 
13290	CDKC;1	CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2	CYCLIN-DEPENDENT KINASE C;1	C-type cyclin-dependent protein kinase 2	CYCLIN-DEPENDENT KINASE C;1		5	Q6I5Y0. Orysa;CDKC;2 in Huang et al. 2008.	 Biochemical character	Os05g0389700	LOC_Os05g32360.1				GO:0005829 - cytosol, GO:0004693 - cyclin-dependent protein kinase activity, GO:0050792 - regulation of viral reproduction, GO:0048440 - carpel development, GO:0048366 - leaf development, GO:0016604 - nuclear body, GO:0009615 - response to virus, GO:0005524 - ATP binding, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0006397 - mRNA processing		
13291	CDKC;2	CDKC;2, Orysa;CDKC;2, Orysa;CDKC;1, CDKC;1, OsCDKC1, OsCDKC;1	CYCLIN-DEPENDENT KINASE C;2	C-type cyclin-dependent protein kinase 1	CYCLIN-DEPENDENT KINASE C;2		1	Q5JK68. AJ564977. Orysa;CDKC;1 in Huang et al. 2008.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0958000	LOC_Os01g72790.1				GO:0048440 - carpel development, GO:0048366 - leaf development, GO:0005524 - ATP binding, GO:0016604 - nuclear body, GO:0009615 - response to virus, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0006397 - mRNA processing, GO:0050792 - regulation of viral reproduction, GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0004693 - cyclin-dependent protein kinase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
13292	CDKC;3	CDKC;3, Orysa;CDKC;3	CYCLIN-DEPENDENT KINASE C;3		CYCLIN-DEPENDENT KINASE C;3		8	Q6ZAG3.	 Biochemical character	Os08g0453800	LOC_Os08g35220.2, LOC_Os08g35220.1				GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding		
13293	CDKD;1	CDKD;1, Orysa;CDKD;1, R2, OsR2, CAK R2, CDKD1;3	CYCLIN-DEPENDENT KINASE D;1	Cyclin-Dependent Kinase-Activating Kinase R2	CYCLIN-DEPENDENT KINASE D;1		5	P29620. X58194. cdc2+/CDC28-related protein kinase. CDKD1;3  in Dedecker et al. 2016. CDK-activating kinase complex subunit.	 Biochemical character	Os05g0392300	LOC_Os05g32600.2, LOC_Os05g32600.1				GO:0005524 - ATP binding, GO:0004693 - cyclin-dependent protein kinase activity, GO:0051301 - cell division, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm		
13294	CDKE;1	CDKE;1, Orysa;CDKE;1, OsCdk8_1, Cdk8_1	CYCLIN-DEPENDENT KINASE E;1		CYCLIN-DEPENDENT KINASE E;1		10	Q336M2. one of the 55 MED (Mediator) subunits. LOC_Os10g42950. 	 Biochemical character	Os10g0580300	LOC_Os10g42950.1, LOC_Os10g42950.2, LOC_Os10g42950.3, LOC_Os10g42950.4, LOC_Os10g42950.5				GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005524 - ATP binding		
13295	CDKF;1	CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A	CYCLIN-DEPENDENT KINASE F;1		CYCLIN-DEPENDENT KINASE F;1		6	Q5Z754. TFIIH sub-complex.	 Biochemical character	Os06g0334400	LOC_Os06g22820.1				GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0019912 - cyclin-dependent protein kinase activating kinase activity, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0010078 - maintenance of root meristem identity		
13296	CDKF;2	CDKF;2, Orysa;CDKF;2	CYCLIN-DEPENDENT KINASE F;2		CYCLIN-DEPENDENT KINASE F;2		12		 Biochemical character								
13297	CDKF;3	CDKF;3, Orysa;CDKF;3	CYCLIN-DEPENDENT KINASE F;3		CYCLIN-DEPENDENT KINASE F;3		3	Q84SN3.	 Biochemical character	Os03g0847600	LOC_Os03g63020.1, LOC_Os03g63020.2, LOC_Os03g63020.3, LOC_Os03g63020.4, LOC_Os03g63020.5				GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005524 - ATP binding, GO:0004693 - cyclin-dependent protein kinase activity		
13298	CDKF;4	CDKF;4, Orysa;CDKF;4	CYCLIN-DEPENDENT KINASE F;4		CYCLIN-DEPENDENT KINASE F;4		2	Q6Z8C8.	 Biochemical character	Os02g0700600	LOC_Os02g47220.1, LOC_Os02g47220.2, LOC_Os02g47220.3				GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0005524 - ATP binding, GO:0004693 - cyclin-dependent protein kinase activity		
13299	CDKG;2	CDKG;2, Orysa;CDKG;2	CYCLIN-DEPENDENT KINASE G;2		CYCLIN-DEPENDENT KINASE G;2		4	Q7XUF4.	 Biochemical character	Os04g0488000	LOC_Os04g41100.1, LOC_Os04g41100.2, LOC_Os04g41100.3, LOC_Os04g41100.4, LOC_Os04g41100.5, LOC_Os04g41100.6				GO:0005524 - ATP binding, GO:0004693 - cyclin-dependent protein kinase activity, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity		
13300	_	Orysa;CKL1, OsSTA287	_	CDK-LIKE 1, cyclin-dependent kinase-like 1	_		12	LOC_Os12g38860. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os12g0577700	LOC_Os12g38860.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009066 - anther 
13301	_	Orysa;CKL2	_	CDK-LIKE 2, cyclin-dependent kinase-like 2	_		7		 Biochemical character	Os07g0596600	LOC_Os07g40550.1, LOC_Os07g40550.2, LOC_Os07g40550.3				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13302	_	Orysa;CKL4	_	CDK-LIKE 4, cyclin-dependent kinase-like 4	_		1			Os01g0201000	LOC_Os01g10430.1, LOC_Os01g10430.2				GO:0005886 - plasma membrane		
13303	_	Orysa;CKL5	_	CDK-LIKE 5, cyclin-dependent kinase-like 5	_		1		 Biochemical character	Os01g0367700	LOC_Os01g27020.1, LOC_Os01g27020.2, LOC_Os01g27020.3, LOC_Os01g27020.4, LOC_Os01g27020.5				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13304	_	Orysa;CKL6	_	CDK-LIKE 6, cyclin-dependent kinase-like 6	_		7		 Biochemical character	Os07g0668000	LOC_Os07g47180.1, LOC_Os07g47180.2				GO:0005886 - plasma membrane, GO:0016772 - transferase activity, transferring phosphorus-containing groups		
13305	_	Orysa;CKL7	_	CDK-LIKE 7, cyclin-dependent kinase-like 7	_		11		 Biochemical character	Os11g0242500	LOC_Os11g13860.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13306	_	Orysa;CKL8, OsSTA277	_	CDK-LIKE 8, cyclin-dependent kinase-like 8	_		12	LOC_Os12g10190. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0203000	LOC_Os12g10190.1, LOC_Os12g10190.2				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		PO:0009066 - anther 
13307	_	Orysa;CKL9	_	CDK-LIKE 9, cyclin-dependent kinase-like 9	_		2		 Biochemical character	Os02g0559300	LOC_Os02g35300.1, LOC_Os02g35300.2, LOC_Os02g35300.3				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
13308	_	CKL10, Orysa;CKL10, OsCKL:10, CKL:10	_	CDK-LIKE 10, cyclin-dependent kinase-like 10	_		8		 Biochemical character	Os08g0112500	LOC_Os08g02050.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13309	_	Orysa;CKS1	_	CDK subunit protein 1	_		3	Q6PS57.	 Biochemical character	Os03g0146300	LOC_Os03g05300.1				GO:0042023 - DNA endoreduplication, GO:0016538 - cyclin-dependent protein kinase regulator activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0051726 - regulation of cell cycle, GO:0000278 - mitotic cell cycle, GO:0051301 - cell division		
13310	E2F1	Orysa;E2F1, OsE2F1, DLN58, OsDLN58, OsE2Fa-1, E2Fa-1	E2F TRANSCRIPTION FACTOR 1	E2F transcription factor 1, DLN repressor 58, DLN motif protein 58, S-phase E2 promoter binding factor a1, E2F transcription factor a1	E2F TRANSCRIPTION FACTOR 1		2	AB041725. HQ858830. E2F-DP transcription factor. 	 Tolerance and resistance - Stress tolerance,  Other	Os02g0537500	LOC_Os02g33430.2, LOC_Os02g33430.1				GO:0046686 - response to cadmium ion, GO:0006351 - transcription, DNA-dependent, GO:0045787 - positive regulation of cell cycle, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005667 - transcription factor complex		
13311	E2F2	Orysa;E2F2, OsE2F2, DLN252, OsDLN252, OsE2Fa-2, E2Fa-2	E2F TRANSCRIPTION FACTOR 2	E2F transcription factor 2, DLN repressor 252, DLN motif protein 252, S-phase E2 promoter binding factor a2, E2F transcription factor a2	E2F TRANSCRIPTION FACTOR 2		12	AB041726.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0158800	LOC_Os12g06200.1, LOC_Os12g06200.2				GO:0003677 - DNA binding, GO:0046686 - response to cadmium ion, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005667 - transcription factor complex, GO:0045787 - positive regulation of cell cycle		
13312	E2F3	Orysa;E2F3, OsE2F3, DLN111, OsDLN111	E2F TRANSCRIPTION FACTOR 3	E2F transcription factor 3, DLN repressor 111, DLN motif protein 111, S-phase E2 promoter binding factor a3, E2F transcription factor a3	E2F TRANSCRIPTION FACTOR 3		4		 Other	Os04g0416100	LOC_Os04g33950.1				GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005667 - transcription factor complex		
13313	E2F4	Orysa;E2F4, OsE2F4	E2F TRANSCRIPTION FACTOR 4	E2F transcription factor 4, S-phase E2 promoter binding factor c, E2F transcription factor c	E2F TRANSCRIPTION FACTOR 4		4		 Other,  Tolerance and resistance - Stress tolerance	Os04g0112200	LOC_Os04g02140.1				GO:0046686 - response to cadmium ion, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0005667 - transcription factor complex, GO:0003700 - transcription factor activity		
13314	DEL1	Orysa;DEL1, OsDEL1, OsE2Fe-1, E2Fe-1	DP-LIKE 1	S-phase E2 promoter binding factor e1, E2F transcription factor e1	DP-LIKE 1		2		 Other	Os02g0739700	LOC_Os02g50630.1				GO:0005667 - transcription factor complex, GO:0042023 - DNA endoreduplication, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0032876 - negative regulation of DNA endoreduplication		
13315	DEL2	Orysa;DEL2, OsDEL2	DP-LIKE 2	S-phase E2 promoter binding factor e2, E2F transcription factor e2	DP-LIKE 2		6		 Other	Os06g0245900	LOC_Os06g13670.1				GO:0006351 - transcription, DNA-dependent, GO:0032876 - negative regulation of DNA endoreduplication, GO:0042023 - DNA endoreduplication, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005667 - transcription factor complex		
13316	DP1	Orysa;DP1, OsDP	_				1	AY224529.	 Other	Os01g0678700	LOC_Os01g48700.1				GO:0005667 - transcription factor complex, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent		
13317	_	Orysa;DP2, DP TF	_	DP transcription factor	_		10	AK240989. AY224551.	 Other	Os10g0440100	LOC_Os10g30420.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005737 - cytoplasm, GO:0042023 - DNA endoreduplication, GO:0003700 - transcription factor activity, GO:0005667 - transcription factor complex		
13318	_	Orysa;DP3	_	E2F dimerization factor	_		3	AY224589.	 Other	Os03g0152100	LOC_Os03g05760.1				GO:0005737 - cytoplasm, GO:0006351 - transcription, DNA-dependent, GO:0042023 - DNA endoreduplication, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005667 - transcription factor complex		
13319	RB1	Orysa;Rb1, OsRBR1, RBR1, OsRBR2, RBR2	RETINOBLASTOMA PROTEIN HOMOLOG 1	retinoblastoma protein homolog 1, etinoblastoma-related 1, retinoblastoma-related protein-2	RETINOBLASTOMA PROTEIN HOMOLOG 1	Osrbr2, Osrbr2-1, Osrbr2-2	11	Q2R374. AY941775. OsRBR2 in Lendvai et al. 2007 and Abraham et al. 2014, Duan et al. 2019, Zhou et al. 2021. GO:0035618: root hair. TO:1000022: anther morphology trait. TO:0000847: panicle inflorescence morphology trait. GO:1905785: negative regulation of anaphase-promoting complex-dependent catabolic process.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Other	Os11g0533500	LOC_Os11g32900.1, LOC_Os11g32900.2				GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007049 - cell cycle, GO:0045786 - negative regulation of cell cycle, GO:0051726 - regulation of cell cycle, GO:0051445 - regulation of meiotic cell cycle, GO:0005829 - cytosol, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0009556 - microsporogenesis, GO:0048655 - tapetal layer morphogenesis, GO:0048366 - leaf development, GO:0048653 - anther development, GO:0009555 - pollen development	TO:0000531 - anther length, TO:0000187 - anther color, TO:0000730 - mitotic cell cycle trait, TO:0000218 - pollen abortion type, TO:0000485 - sterility related trait, TO:0000245 - pollen free	PO:0009005 - root , PO:0009029 - stamen , PO:0020003 - plant ovule , PO:0000002 - anther wall , PO:0020021 - integument , PO:0001007 - pollen development stage , PO:0009047 - stem , PO:0025034 - leaf , PO:0001050 - leaf development stage , PO:0001004 - anther development stage , PO:0009066 - anther 
13320	PIS1	Orysa;Rb2, RBR2, OsRBR1, RBR1, OsPIS1, RB2, OsRB2, RB1, OsRB1	PANICLE IN SPIKELET 1	retinoblastoma protein homolog 2, etinoblastoma-related 2, retinoblastoma-related protein-1, panicle in spikelet1	RETINOBLASTOMA PROTEIN HOMOLOG 2	pis1, pis1-1, pis1-2	8	Q84QM3. AY941774. OsRBR1 in Lendvai et al. 2007 and Abraham et al. 2014, Duan et al. 2019,  Zhou et al. 2021, Zeng et al. 2022, Zheng at al. 2022. RB1 in Shen et al. 2023. PO:0030123: panicle inflorescence. GO:0035618: root hair. TO:0000869: glume morphology trait. TO:0000862: floral organ morphology trait. TO:1000024: palea morphology trait. TO:0000748: leaf morphology trait. 	 Other,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0538700	LOC_Os08g42600.1, LOC_Os08g42600.2				GO:0010582 - floral meristem determinacy, GO:0048437 - floral organ development, GO:0010076 - maintenance of floral meristem identity, GO:0048444 - floral organ morphogenesis, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046686 - response to cadmium ion, GO:0051445 - regulation of meiotic cell cycle, GO:0006351 - transcription, DNA-dependent, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0045786 - negative regulation of cell cycle, GO:0051726 - regulation of cell cycle, GO:0007049 - cell cycle	TO:0000730 - mitotic cell cycle trait, TO:0006009 - lodicule anatomy and morphology trait, TO:0000316 - photosynthetic ability, TO:0000223 - pistil anatomy and morphology trait, TO:0000215 - stamen anatomy and morphology trait, TO:0000474 - glume opening, TO:0000657 - spikelet anatomy and morphology trait, TO:0000729 - meiotic cell cycle trait	PO:0009005 - root , PO:0020003 - plant ovule , PO:0009036 - lodicule , PO:0000229 - flower meristem , PO:0009038 - palea , PO:0025034 - leaf , PO:0009047 - stem , PO:0009066 - anther , PO:0025477 - floral organ primordium , PO:0009030 - carpel , PO:0000002 - anther wall , PO:0009049 - inflorescence , PO:0020021 - integument , PO:0009037 - lemma 
13321	WEE1	Ores;Wee1, OsWEE1	_	protein kinase Wee1	_		2	Q6Z829. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0135300	LOC_Os02g04240.1				GO:0004674 - protein serine/threonine kinase activity, GO:0007050 - cell cycle arrest, GO:0046872 - metal ion binding, GO:0004715 - non-membrane spanning protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0031570 - DNA integrity checkpoint, GO:0010332 - response to gamma radiation, GO:0000076 - DNA replication checkpoint	TO:0000161 - radiation response trait	PO:0000423 - plant zygote 
13322	_	Orysa;Wee2	_	protein kinase Wee2	_		2										
13323	CYCD1;3	CycD1;3, CycD1;os;3, Orysa;CycD1;3, Orysa;CYCD1;3, OsCYCD1;2, CYCD1;2	CYCLIN-D1-3	D-type cyclin 1;3	CYCLIN-D1-3		8	Q8H339. OsCYCD1;2 in Jiang et al. 2024.	 Biochemical character	Os08g0421100	LOC_Os08g32540.1				GO:0007049 - cell cycle, GO:0045840 - positive regulation of mitosis, GO:0051301 - cell division, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009051 - spikelet , PO:0007631 - plant embryo stage 
13324	_		_	beta-lactase2, beta-lactase 2			1		 Biochemical character	Os01g0952600	LOC_Os01g72340.1				GO:0009507 - chloroplast, GO:0009341 - beta-galactosidase complex, GO:0004565 - beta-galactosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0030246 - carbohydrate binding		
13325	_	GalM4	_				4		 Biochemical character	Os04g0458300	LOC_Os04g38530.1				GO:0019318 - hexose metabolic process, GO:0004034 - aldose 1-epimerase activity, GO:0030246 - carbohydrate binding		
13326	_	GalK2	_				4		 Biochemical character	Os04g0608100	LOC_Os04g51880.1, LOC_Os04g51880.2, LOC_Os04g51880.3, LOC_Os04g51880.4, LOC_Os04g51880.5, LOC_Os04g51880.6				GO:0046396 - D-galacturonate metabolic process, GO:0006012 - galactose metabolic process, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004335 - galactokinase activity, GO:0047912 - galacturonokinase activity		
13327	_	GalT	_				7		 Biochemical character	Os07g0171200	LOC_Os07g07550.1				GO:0006012 - galactose metabolic process, GO:0008270 - zinc ion binding, GO:0080040 - positive regulation of cellular response to phosphate starvation, GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity		
13328	_	BTI-1	_				8		 Biochemical character	Os08g0520000	LOC_Os08g40850.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
13329	GPT2	OsGPT2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2	Glc-6-phosphate translocator2, Glc-6-phosphate translocator 2	GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2		7	GO:0071917: triose-phosphate transmembrane transporter activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0523600	LOC_Os07g33954.1				GO:0022857 - transmembrane transporter activity, GO:0009651 - response to salt stress, GO:0015297 - antiporter activity, GO:0015120 - phosphoglycerate transmembrane transporter activity, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0005215 - transporter activity	TO:0006001 - salt tolerance	PO:0005020 - vascular bundle , PO:0025034 - leaf , PO:0005417 - phloem , PO:0020142 - stem internode , PO:0009047 - stem 
13330	_	HPibH8-1	_	PibH8 homologue 1				5 kb Pib family gene. It may also be a NBS-LRR gene.									
13331	_	HPibH8-2	_	PibH8 homologue 2				7 kb Pib family gene. It may also be a NBS-LRR gene.									
13332	PIB2	Pib2	PYRICULARIA ORYZAE RESISTANCE B 2	Magnaporthe grisea resistance-b2, Pib homolog			2	AB013450.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13333	_	rbcL	_	large subunit of Rubisco					 Biochemical character								
13334	_	rbcS	_	Small subunits of Rubisco	SMALL SUBUNITS OF RUBISCO 				 Biochemical character						GO:0009507 - chloroplast, GO:0055114 - oxidation reduction, GO:0009536 - plastid, GO:0009853 - photorespiration, GO:0004497 - monooxygenase activity, GO:0019253 - reductive pentose-phosphate cycle, GO:0016984 - ribulose-bisphosphate carboxylase activity		
13335	PI12	Pi12(t), Pi12(t)*, Pi12, Pi-12(t)	PYRICULARIA ORYZAE RESISTANCE 12	Pyricularia oryzae resistance from Hong-jiao zhan (an indica cultivar), Magnaporthe grisea resistance-12, Blast resistance 12			12	PO:0009025; leaf. K80(Hong-jiao-zhan(Indica)):Map position (47.6-48.2 cM).	 Tolerance and resistance - Disease resistance			GR:0060640			GO:0009620 - response to fungus	TO:0000485 - sterility related trait, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	PO:0009025 - vascular leaf 
13336	PI22	Pi22, Pi-22, Pi 22	PYRICULARIA ORYZAE RESISTANCE 22	Pyricularia oryzae resistance-22, Magnaporthe grisea resistance-22, Blast resistance 22				Original line is Pai-kan-tao (Japonica). Pi22 is controlling resistant to Pyricularia oryzae race 22.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000498 - female fertility restoration trait, TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	
13337	PI42	Pi42(t), Pi-42(t), Pi42	PYRICULARIA ORYZAE RESISTANCE 42 	Pyricularia grisea resistance 42, Magnaporthe grisea resistance 42, Blast resistance 42			8	Original line is Zhe733 (Indica). Pi41 in Lee et al. 2009 (Plant & Animal Genomics XVII Conference) was renamed Pi42 in Lee et al. 2009 (Mol Breeding  2009 24 127-134).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
13338	PI13	Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*	PYRICULARIA ORYZAE RESISTANCE 13	Pyricularia oryzae resistance 13, Magnaporthe grisea resistance 13, Blast resistance 13			6	a resistant gene found in Kasalath (Indica).	 Tolerance and resistance - Disease resistance			GR:0060642			GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000486 - seed color, TO:0000477 - panicle blast disease resistance	
13339	PI14	Pi14(t), Pi14(t)*, Pi14	PYRICULARIA ORYZAE RESISTANCE 14	Pyricularia oryzae resistance 14, Magnaporthe grisea resistance-14, Blast resistance 14			12	a resistant gene found in Kasalath (indica).  	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000488 - seed composition based quality trait, TO:0000477 - panicle blast disease resistance	
13340	PI11	Pi-11(t)*	PYRICULARIA ORYZAE RESISTANCE 11	Pyricularia oryzae resistance 11, Magnaporthe grisea resistance zh, Blast resistance 11				Original line is Hongjiaozhan (Indica).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000484 - seed shape, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	
13341	WSI76	wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24, OsGolS1, GolS1, OsGOLS2, GOLS2	WATER STRESS INDUCIBLE PROTEIN 76	water stress-induced 76, GALACTINOL SYNTHASE 2, galactinol synthase 1	WATER STRESS INDUCIBLE PROTEIN 76		7	D26537. GolS2 homologue in Wang et al. 2016. OsGolS1 in Kong et al. 2019. OsGOLS2 in Liu et al. 2022.	 Tolerance and resistance - Stress tolerance	Os07g0687900 	LOC_Os07g48830.2, LOC_Os07g48830.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0006970 - response to osmotic stress, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009408 - response to heat, GO:0009644 - response to high light intensity, GO:0048511 - rhythmic process	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
13342	PLS1	OsVHA-A, VHAA1, VHA-A1, OsVHA-A1, OsPLS1, OsPSL1/VHA-A1	PREMATURE LEAF SENESCENCE 1	vacuolar H+-ATPase subunit A, vacuolar-type H+-ATPase subunit A1, premature leaf senescence 1		ospls1	6	GO:0071588: hydrogen peroxide mediated signaling pathway. TO:0012004: quantum yield.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Lesion mimic,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Physiological traits - Dormancy,  Vegetative organ - Leaf	Os06g0662000 	LOC_Os06g45120.2, LOC_Os06g45120.1				GO:0009742 - brassinosteroid mediated signaling, GO:0009736 - cytokinin mediated signaling, GO:0042542 - response to hydrogen peroxide, GO:0033180 - proton-transporting V-type ATPase, V1 domain, GO:0005618 - cell wall, GO:0005524 - ATP binding, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0000325 - plant-type vacuole, GO:0009751 - response to salicylic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0007030 - Golgi organization, GO:0009734 - auxin mediated signaling pathway, GO:0010148 - transpiration, GO:0009737 - response to abscisic acid stimulus, GO:0010150 - leaf senescence, GO:0010162 - seed dormancy, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0009651 - response to salt stress, GO:0009555 - pollen development, GO:0009738 - abscisic acid mediated signaling	TO:0000371 - yield trait, TO:0000598 - protein content, TO:0000253 - seed dormancy, TO:0000063 - mimic response, TO:0001018 - transpiration rate, TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity, TO:0000495 - chlorophyll content, TO:0000333 - sugar content, TO:0000128 - harvest index, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000152 - panicle number, TO:0001027 - net photosynthetic rate	PO:0001054 - 4 leaf senescence stage , PO:0025374 - seed dormant stage , PO:0020025 - micropyle 
13343	SMG2	YDA1, OsMKKK10, MKKK10, SMG2/OsMKKK10, OsSMG2, OsMAPKKK10, MAPKKK10	SMALL GRAIN 2	YODA 1, OsYODA-2, YODA-2, MAPK kinase kinase 10, small grain 2	MAPK KINASE KINASE 10	smg2-1, osmkkk10	4	a MAPKK gene involved in the regulation ofstomatal development. a homolog of A. thaliana  YODA. TO:0000970: panicle density. TO:0000847: panicle inflorescence morphology trait. TO:0000975: grain width.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os04g0559800 	LOC_Os04g47240.3, LOC_Os04g47240.2, LOC_Os04g47240.1				GO:0009741 - response to brassinosteroid stimulus, GO:0004672 - protein kinase activity, GO:0045595 - regulation of cell differentiation, GO:0009690 - cytokinin metabolic process, GO:0009742 - brassinosteroid mediated signaling, GO:0042127 - regulation of cell proliferation, GO:0010103 - stomatal complex morphogenesis, GO:0009793 - embryonic development ending in seed dormancy, GO:0010229 - inflorescence development, GO:0080036 - regulation of cytokinin mediated signaling, GO:0005524 - ATP binding	TO:0000734 - grain length, TO:0000397 - grain size, TO:0000447 - filled grain number, TO:0000621 - inflorescence development trait, TO:0000456 - spikelet number, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0002677 - brassinosteroid sensitivity, TO:0002660 - cytokinin content, TO:0000590 - grain weight	PO:0001083 - inflorescence development stage 
13344	_	OsAP65	_	aspartic protease 65			7		 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character	Os07g0592200	LOC_Os07g40260.1, LOC_Os07g40260.2				GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis		
13345	_	OsCDR1	_	CONSTITUTIVE DISEASE RESISTANCE 1			1	A rice homologue of Arabidopsis CDR1.	 Biochemical character	Os01g0178600	LOC_Os01g08330.1				GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity		
13346	_	OsAsp2	_	aspartic protease 2			11		 Biochemical character	Os11g0183900	LOC_Os11g08100.1				GO:0009505 - plant-type cell wall, GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity		
13347	_	OsAsp3	_	aspartic protease 3			12		 Biochemical character	Os12g0177500	LOC_Os12g07780.1, LOC_Os12g07780.2				GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis		
13348	PR1-12	OsPR1#012, PR1#012, OsPR1-12, OsPR1.1, PR1.1	PATHOGENESIS-RELATED GENE 1-12	pathogenesis-related protein 1-12, PR protein 1-12	PATHOGENESIS-RELATED PROTEIN 1-12		1	OsPR1.1 in Sahu et al. 2021, Sahu et al. 2022.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0382400	LOC_Os01g28500.1				GO:0005576 - extracellular region, GO:0050832 - defense response to fungus, GO:0009617 - response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000129 - false smut disease resistance	
13349	PR1-21	OsPR1#021, OsPR1-21	PATHOGENESIS-RELATED GENE 1-21	pathogenesis-related protein 1-21, PR protein 1-21	PATHOGENESIS-RELATED PROTEIN 1-21		2		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0786500	LOC_Os02g54540.1				GO:0005576 - extracellular region		
13350	PR1-22	OsPR1#022, OsPR1-22	PATHOGENESIS-RELATED GENE 1-22	pathogenesis-related protein 1-22, PR protein 1-22	PATHOGENESIS-RELATED PROTEIN 1-22		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0786900	LOC_Os02g54560.1				GO:0005576 - extracellular region		
13351	PR1-51	OsPR1#051, OsPR1-51	PATHOGENESIS-RELATED GENE 1-51	pathogenesis-related protein 1-51, PR protein 1-51	PATHOGENESIS-RELATED PROTEIN 1-51		5		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0595000	LOC_Os05g51660.1				GO:0050832 - defense response to fungus	TO:0000129 - false smut disease resistance	
13352	PR1-52	OsPR1#052, OsPR1-52	PATHOGENESIS-RELATED GENE 1-52	pathogenesis-related protein 1-52, PR protein 1-52	PATHOGENESIS-RELATED PROTEIN 1-52		5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0595200	LOC_Os05g51680.1, LOC_Os05g51680.2				GO:0005576 - extracellular region		
13353	PR1-71	OsPR1#071, OsPR1-71	PATHOGENESIS-RELATED GENE 1-71	pathogenesis-related protein 1-71, PR protein 1-71	PATHOGENESIS-RELATED PROTEIN 1-71		7		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0124900	LOC_Os07g03279.1				GO:0005576 - extracellular region		
13354	PR1-72	OsPR1#072, OsPR1-72, PR1L, OsPR1L, OsPRB1, PRB1	PATHOGENESIS-RELATED GENE 1-72	pathogenesis-related protein 1-72, PR protein 1-72, PR1-like	PATHOGENESIS-RELATED PROTEIN 1-72		7	PR-1a in Katsuragi et al. 2015. OsPRB1 in Wang et al. 2023.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os07g0127500	LOC_Os07g03580.1				GO:0005576 - extracellular region, GO:0002237 - response to molecule of bacterial origin, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
13355	PR1-73	OsPR1#073, OsPR1-73	PATHOGENESIS-RELATED GENE 1-73	pathogenesis-related protein 1-73, PR protein 1-73	PATHOGENESIS-RELATED PROTEIN 1-73		7		 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0127600	LOC_Os07g03288.1, LOC_Os07g03590.1				GO:0005576 - extracellular region, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
13356	PR1-101	OsPR1#101, OsPR1-101, OsPR1L2, PR1L2, OsPRB1, PRB1	PATHOGENESIS-RELATED GENE 1-101	pathogenesis-related protein 1-101, PR protein 1-101, pathogenesis-related protein 1 like protein 2	PATHOGENESIS-RELATED PROTEIN 1-101		10	AU070895. OsPRB1 in Wang et al. 2023.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Tolerance and resistance - Insect resistance	Os10g0191300	LOC_Os10g11500.1				GO:0005576 - extracellular region, GO:0009617 - response to bacterium, GO:0002215 - defense response to nematode, GO:0009609 - response to symbiotic bacterium	TO:0000384 - nematode damage resistance	PO:0009005 - root 
13357	PR1-121	OsPR1#121, OsPR1-121	PATHOGENESIS-RELATED GENE 1-121	pathogenesis-related protein 1-121, PR protein 1-121	PATHOGENESIS-RELATED PROTEIN 1-121		12		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0633400	LOC_Os12g43700.1				GO:0005576 - extracellular region		
13358	CLPP4	OsClpP4, ClpP4, OsClp11, CLP11	CHLOROPLAST PROTEASE 4	plastidic caseinolytic protease 4, chloroplast Clp 4, Clp protease 11. Plastid caseinolytic protease P4	CHLOROPLAST PROTEASE 4		10	Clp Protease Family (Peptidase_S14; PF00574). OsClp11 in http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os10g0580800	LOC_Os10g43050.1				GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009658 - chloroplast organization		
13359	VYL	OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL	VIRESCENT-YELLOW LEAF	plastidic caseinolytic protease 6, chloroplast Clp 6, Virescent-Yellow Leaf, Clp protease 6, narrow leaf 9, Clp proteolytic subunit 6	CHLOROPLAST PROTEASE 6	vyl, nal9	3	Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Vegetative organ - Leaf,  Biochemical character,  Character as QTL - Plant growth activity,  Tolerance and resistance - Insect resistance,  Vegetative organ - Root,  Coloration - Chlorophyll	Os03g0411500	LOC_Os03g29810.1				GO:0046250 - limonene biosynthetic process, GO:0010597 - green leaf volatile biosynthetic process, GO:0015979 - photosynthesis, GO:0009941 - chloroplast envelope, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0009534 - chloroplast thylakoid, GO:0009658 - chloroplast organization, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0002213 - defense response to insect, GO:0009965 - leaf morphogenesis, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0046246 - terpene biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling	TO:0000293 - chlorophyll-a content, TO:0000346 - tiller number, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000370 - leaf width, TO:0000495 - chlorophyll content, TO:0000424 - brown planthopper resistance, TO:0000205 - white-backed planthopper resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000357 - growth and development trait, TO:0002668 - jasmonic acid content, TO:0002667 - abscisic acid content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000455 - seed set percent, TO:0000227 - root length, TO:0000605 - hydrogen peroxide content, TO:0000382 - 1000-seed weight	
13360	CLPP3	OsClpP3, OsClp2, CLP2	CHLOROPLAST PROTEASE 3	plastidic caseinolytic protease 3, chloroplast Clp 3, Clp protease 2	CHLOROPLAST PROTEASE 3		1	LOC_Os01g32350. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os01g0507900	LOC_Os01g32350.1, LOC_Os01g32350.2, LOC_Os01g32350.3				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
13361	CLPP5	OsClpP5, ClpP5, OsClp4, CLP4	CHLOROPLAST PROTEASE 5	plastidic caseinolytic protease 5, chloroplast Clp 5, Clp protease 4, Plastid caseinolytic protease P5	CHLOROPLAST PROTEASE 5		3	Clp Protease Family (Peptidase_S14; PF00574). OsClp4 in http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os03g0308100	LOC_Os03g19510.1				GO:0006508 - proteolysis, GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope, GO:0004252 - serine-type endopeptidase activity, GO:0009840 - chloroplastic endopeptidase Clp complex		
13362	CLPT	OsClpT, ClpT	CHLOROPLAST PROTEASE T	plastidic caseinolytic protease T, chloroplast Clp T	CHLOROPLAST PROTEASE T		3		 Biochemical character	Os03g0247000	LOC_Os03g14280.1				GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0009579 - thylakoid, GO:0019538 - protein metabolic process		
13363	CLPP1	OsClpP1, ClpP1	CHLOROPLAST PROTEASE 1	plastidic caseinolytic protease 1, chloroplast Clp 1	CHLOROPLAST PROTEASE 1				 Biochemical character								
13364	RPOA	RpoA	RNA POLYMERASE SUBUNIT A	RNA polymerase subunit A	RNA POLYMERASE SUBUNIT A				 Biochemical character								
13365	PSBA	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1, psbD1	PHOTOSYSTEM II SUBUNIT PSBA	PSII subunit PsbA, photosystem II subunit PsbA, PSII 32kDa protein, photosystem II protein D1, QB Protein, Photosystem II D1 protein			Pt	P0C433, P0C434. X15901:CAA34007 (Japonica Group chloroplast genome). GU592207:ADD62817 (Japonica Group chloroplast genome).  AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46104: Nip001 (cultivar Nipponbare), AY522331 (isolate PA64S). L40578. M36191. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). DQ789329. PSBD1 in Liu et al. 2018, Liu et al. 2020	 Biochemical character		LOC_Osp1g00110				GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0009523 - photosystem II, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0009536 - plastid, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0010206 - photosystem II repair, GO:0009737 - response to abscisic acid stimulus, GO:0009635 - response to herbicide, GO:0016491 - oxidoreductase activity, GO:0009535 - chloroplast thylakoid membrane	TO:0000615 - abscisic acid sensitivity, TO:0000075 - light sensitivity	
13366	_	Lhcp2, LhcpII, LchP2	_	light-harvesting protein Lhcp2, light-harvesting complex protein Lhcp2, PSII Lhcp2													
13368	GPA8	v-ATP-E, Osv-ATP-E, OsVHA-E1, VHA-E1, OsGPA8, OsRHA4, RHA4	GLUTELIN PRECURSOR ACCUMULATION 8	vacuolar ATP synthase subunit E, vacuolar H+-ATPase subunit E isoform 1, glutelin precursor accumulation8	V-ATPASE SUBUNIT E	gpa8, gpa8-1, gpa8-2	1	GO:0062052: starch granule initiation.	 Vegetative organ - Culm,  Biochemical character,  Character as QTL - Plant growth activity,  Seed - Physiological traits - Storage substances	Os01g0659200	LOC_Os01g46980.1				GO:0015991 - ATP hydrolysis coupled proton transport, GO:0007030 - Golgi organization, GO:0005802 - trans-Golgi network, GO:0051453 - regulation of intracellular pH, GO:0009705 - plant-type vacuole membrane, GO:0032527 - protein exit from endoplasmic reticulum, GO:0006892 - post-Golgi vesicle-mediated transport, GO:0009960 - endosperm development, GO:0015031 - protein transport, GO:0031982 - vesicle, GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0033363 - secretory granule organization, GO:0006885 - regulation of pH	TO:0000063 - mimic response, TO:0000357 - growth and development trait, TO:0000104 - floury endosperm, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0002653 - endosperm storage protein content, TO:0000653 - seed development trait	PO:0009051 - spikelet , PO:0007633 - endosperm development stage , PO:0009005 - root , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009089 - endosperm 
13369	CLPR4	OsClpR4, ClpR4, OsClp1, CLP1	CHLOROPLAST PROTEASE R4	plastidic caseinolytic protease R4, chloroplast Clp R4, Clp protease 1	CHLOROPLAST PROTEASE R4		1	LOC_Os01g16530. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os01g0271400	LOC_Os01g16530.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0009570 - chloroplast stroma, GO:0009941 - chloroplast envelope		
13370	SET1	OsSET1, SDG721, OsSDG721	SET PROTEIN 1	SET protein 1, SET DOMAIN GROUP 721 protein	SET PROTEIN 1	ossdg721, ossdg721-1, ossdg721-2, ossdg721-3	1	PO:0030123: panicle inflorescence.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os01g0218800	LOC_Os01g11952.1				GO:0010446 - response to alkalinity, GO:0051568 - histone H3-K4 methylation, GO:0005634 - nucleus, GO:0008168 - methyltransferase activity, GO:0048573 - photoperiodism, flowering, GO:0008270 - zinc ion binding, GO:0009294 - DNA mediated transformation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000525 - sodium to potassium content ratio, TO:0020004 - shoot sodium content, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000481 - alkali sensitivity, TO:0020003 - shoot potassium content, TO:0000605 - hydrogen peroxide content, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000206 - leaf angle, TO:0000396 - grain yield	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009039 - glume , PO:0009005 - root , PO:0009047 - stem 
13371	_	OsSET2, SDG705	_	SET protein 2			1		 Biochemical character	Os01g0655300	LOC_Os01g46700.1				GO:0008168 - methyltransferase activity, GO:0009294 - DNA mediated transformation		
13372	_	OsSET3, SDG729	_	SET protein 3			1		 Biochemical character	Os01g0772150	LOC_Os01g56540.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0018024 - histone-lysine N-methyltransferase activity		
13373	SUVH7	OsSET4, SET4, SDG709, OsSDG709, OsSUVH7	SUVH HISTONE METHYLTRANSFERASE 7	SET protein 4, SUVH Histone Methyltransferase 7	SUVH HISTONE METHYLTRANSFERASE 7	ossuvh7, ossuvh7-1, ossuvh7-2	1	a rice homolog of Su(var)3-9. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0811300	LOC_Os01g59620.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0005694 - chromosome	TO:0006001 - salt tolerance	PO:0005020 - vascular bundle , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009005 - root , PO:0020142 - stem internode , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0020104 - leaf sheath 
13374	_	OsSET6, SDG720, OsPHD7, PHD7	_	SET protein 6, Plant homeo-domain finger protein 7, PHD finger protein 7			1	BGIOSGA005241. B8A9M3 (indica).	 Tolerance and resistance - Stress tolerance	Os01g0965500	LOC_Os01g73460.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0000785 - chromatin, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0042393 - histone binding, GO:0046872 - metal ion binding, GO:0009651 - response to salt stress, GO:0003712 - transcription cofactor activity	TO:0006001 - salt tolerance	
13375	_	OsSET7, SDG730, OsPHD8, PHD8	_	SET protein 7, Plant homeo-domain finger protein 8, PHD finger protein 8			2	BGIOSGA007416. A2X0A9 (indica).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0122700	LOC_Os02g03030.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0006275 - regulation of DNA replication, GO:0008270 - zinc ion binding, GO:0051726 - regulation of cell cycle, GO:0046976 - histone methyltransferase activity (H3-K27 specific), GO:0009901 - anther dehiscence	TO:0006001 - salt tolerance	
13376	_	OsSET10, SDG712	_	SET protein 10			2		 Biochemical character	Os02g0621100	LOC_Os02g40770.1, LOC_Os02g40770.2				GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0008270 - zinc ion binding		
13377	_	OsSET11, SDG706	_	SET protein 11			2		 Biochemical character	Os02g0708600	LOC_Os02g47900.1				GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005694 - chromosome, GO:0005634 - nucleus		
13378	_	OsSET12	_	SET protein 12			2		 Biochemical character	Os02g0725200	LOC_Os02g49326.1				GO:0009507 - chloroplast, GO:0030785 - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity		
13379	_	OsSET13	_	SET protein 13			2			Os02g0733800	LOC_Os02g50100.1				GO:0009507 - chloroplast		
13380	_	OsSET14, SDG739	_	SET protein 14			3			Os03g0168700	LOC_Os03g07260.1						
13381	_	OsSET16, SDG713, OsSUVH3	_	SET protein 16, SUVH Histone Methyltransferase 3			3	a rice homolog of Su(var)3-9.	 Biochemical character	Os03g0320400	LOC_Os03g20430.1				GO:0005694 - chromosome, GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus		
13382	_	OsSET17, SDG716	_	SET protein 17			3			Os03g0704200	LOC_Os03g49730.1, LOC_Os03g49730.2, LOC_Os03g49730.3, LOC_Os03g49730.4				GO:0008270 - zinc ion binding		
13383	_	OsSET18, SDG738	_	SET protein 18			4			Os04g0423600	LOC_Os04g34610.1						
13384	_	OsSET19, SDG708	_	SET protein 19			4		 Biochemical character	Os04g0429100	LOC_Os04g34976.2				GO:0034968 - histone lysine methylation, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition		
13385	PHS1	OsSET20, SET20, OsSDG703, SDG703, OsSUVH5, SUVH5, OsPHS1	PLANTHOPPER SUSCEPTIBLE 1	SET protein 20, SUVH Histone Methyltransferase 5, planthopper susceptible 1	SET DOMAIN GROUP PROTEIN 703	phs1	4	a rice homolog of Su(var)3-9. GO:1900366: negative regulation of defense response to insect. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os04g0544100	LOC_Os04g45990.1				GO:0046974 - histone methyltransferase activity (H3-K9 specific), GO:0018024 - histone-lysine N-methyltransferase activity, GO:0005634 - nucleus, GO:0051567 - histone H3-K9 methylation, GO:0002213 - defense response to insect, GO:0002758 - innate immune response-activating signal transduction, GO:0008270 - zinc ion binding, GO:0005694 - chromosome	TO:0000261 - insect damage resistance	PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath 
13386	_	OsSET21, SDG722	_	SET protein 21			4			Os04g0629100	LOC_Os04g53700.1				GO:0008270 - zinc ion binding		
13387	_	OsSET22, SDG728, OsSUVH8	_	SET protein 22, SUVH Histone Methyltransferase 8			5	a rice homolog of Su(var)3-9.	 Biochemical character	Os05g0490700	LOC_Os05g41172.1, LOC_Os05g41172.2				GO:0005634 - nucleus, GO:0005694 - chromosome, GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity		
13388	_	OsSET23	_	SET protein 23			5			Os05g0587200	LOC_Os05g50980.1				GO:0009507 - chloroplast, GO:0009508 - plastid chromosome		
13389	_	OsSET25, SDG726, OsSUVH2, DLN184, OsDLN184, HKMTs	_	SET protein 25, SUVH Histone Methyltransferase 2, DLN repressor 184, DLN motif protein 184, Histone-lysine N-methyltransferase family member			7	a rice homolog of Su(var)3-9.	 Biochemical character	Os07g0435900	LOC_Os07g25450.1				GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity		
13390	_	OsSET26, SDG731	_	SET protein 26			7			Os07g0471100	LOC_Os07g28840.1						
13391	_	OsSET27, SDG701	_	SET protein 27, SET DOMAIN GROUP701, SET DOMAIN GROUP 701		sdg701-1	8	LOC_Os08g08210. GO:0099402: plant organ development. TO:0000934: photoperiod-sensitive flowering time trait.	 Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os08g0180100	LOC_Os08g08210.1				GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0042800 - histone methyltransferase activity (H3-K4 specific), GO:0048578 - positive regulation of long-day photoperiodism, flowering	TO:0000592 - 1000-dehulled grain weight, TO:0002616 - flowering time, TO:0000450 - grain yield per panicle	
13392	_	OsSET28, SDG740	_	SET protein 28			8			Os08g0205300	LOC_Os08g10470.1, LOC_Os08g10470.2						
13393	_	OsSET29	_	SET protein 29			8			Os08g0244400	LOC_Os08g14660.1						
13394	_	OsSET30, SDG710, OsSUVH10, DLN209, OsDLN209	_	SET protein 30, SUVH Histone Methyltransferase 10, DLN repressor 209, DLN motif protein 209			8	a rice homolog of Su(var)3-9.	 Biochemical character	Os08g0400200	LOC_Os08g30910.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0008270 - zinc ion binding, GO:0005694 - chromosome, GO:0005634 - nucleus		
13395	_	OsSET31, SDG707	_	SET protein 31			8	LOC_Os08g34370.			LOC_Os08g34370						
13396	_	OsSET32, SDG715, OsSUVH9	_	SET protein 32, SUVH Histone Methyltransferase 9			8	a rice homolog of Su(var)3-9.	 Biochemical character	Os08g0565700	LOC_Os08g45130.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0008270 - zinc ion binding, GO:0005694 - chromosome, GO:0005634 - nucleus		
13397	SET33	OsSET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723, DLN219, OsDLN219	SET PROTEIN 33	SET protein 33, Trithorax1, TRITHORAX-like protein OsTrx1, SET domain group protein 723, DLN repressor 219, DLN motif protein 219	SET PROTEIN 33	ostrx1, ostrx1-2, ostrx1-3	9	GO:0035556:intracellular signal transduction. an ortholog of Arabidopsis Trithorax protein1 (ATX1). OsTrx1 functions as a negative regulator of Ghd7, independently from Ehd3 and Hd17/Ef7/OsELF3-1 (Choi et al. 2014).	 Biochemical character,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Heading date	Os09g0134500	LOC_Os09g04890.1				GO:0010314 - phosphatidylinositol-5-phosphate binding, GO:0008270 - zinc ion binding, GO:0009909 - regulation of flower development, GO:0010093 - specification of floral organ identity, GO:0042800 - histone methyltransferase activity (H3-K4 specific), GO:0010229 - inflorescence development, GO:0005886 - plasma membrane, GO:0006325 - chromatin organization, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0048574 - long-day photoperiodism, flowering	TO:0000137 - days to heading, TO:0002759 - grain number, TO:0002616 - flowering time, TO:0000621 - inflorescence development trait, TO:0000557 - secondary branch number	PO:0001083 - inflorescence development stage 
13398	_	OsSET35, SDG727, OsSUVH6	_	SET protein 35, SUVH Histone Methyltransferase 6			9	a rice homolog of Su(var)3-9.	 Biochemical character	Os09g0362900	LOC_Os09g19830.1				GO:0008270 - zinc ion binding, GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0018024 - histone-lysine N-methyltransferase activity		
13399	_	OsSET36	_	SET protein 36			9			Os09g0411650	LOC_Os09g24530.1						
13400	_	OsSET37, SDG732	_	SET protein 37			9		 Biochemical character	Os09g0556700	LOC_Os09g38440.1				GO:0005634 - nucleus, GO:0018024 - histone-lysine N-methyltransferase activity, GO:0008270 - zinc ion binding, GO:0034968 - histone lysine methylation		
13401	_	OsSET38, SDG741	_	SET protein 38			10			Os10g0410700	LOC_Os10g27060.1, LOC_Os10g27060.2						
13402	_	OsSET39	_	SET protein 39			10			Os10g0506800	LOC_Os10g36250.1						
13403	_	OsSET40, SDG733, OsSUVH11	_	SET protein 40, SUVH Histone Methyltransferase 11			11	a rice homolog of Su(var)3-9.	 Biochemical character	Os11g0131600	LOC_Os11g03700.1				GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0018024 - histone-lysine N-methyltransferase activity		
13404	_	OsSET41, SDG704, OsSUVH1	_	SET protein 41, SUVH Histone Methyltransferase 1			11	AF344453. a rice homolog of Su(var)3-9.	 Biochemical character	Os11g0602200	LOC_Os11g38900.1				GO:0018024 - histone-lysine N-methyltransferase activity, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0005694 - chromosome		
13405	_	OsSET42, SET42, SDG734, OsSUVH12, SUVH12	_	SET protein 42, SUVH Histone Methyltransferase 12			12	LOC_Os12g03460 (not found in MSU Rice Genome Annotation Project Release 7 data). a rice homolog of Su(var)3-9.		Os12g0128600					GO:0046872 - metal ion binding, GO:0005758 - mitochondrial intermembrane space, GO:0015031 - protein transport		
13406	_	OsSET43, SDG717	_	SET protein 43			12		 Biochemical character	Os12g0613200	LOC_Os12g41900.1				GO:0005634 - nucleus, GO:0008168 - methyltransferase activity		
13407	MTP8.1	OsMTP8.1	METAL TOLERANCE PROTEIN 8.1	metal tolerance protein 8.1	METAL TOLERANCE PROTEIN 8.1	mtp8.1	3	Q10PP8. Cation Diffusion Facilitator (CDF) family. a tonoplast-localized manganese transporter. a Manganese (Mn) cation diffusion facilitators (Mn-CDFs). GO:0061687: detoxification of inorganic compound. TO:0020091: manganese content. GO:0120127: response to zinc ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0226400	LOC_Os03g12530.1				GO:0006828 - manganese ion transport, GO:0016021 - integral to membrane, GO:0010045 - response to nickel ion, GO:0046686 - response to cadmium ion, GO:0048316 - seed development, GO:0010042 - response to manganese ion, GO:0010043 - response to zinc ion, GO:0032025 - response to cobalt ion, GO:0008324 - cation transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane, GO:0005774 - vacuolar membrane, GO:0005384 - manganese ion transmembrane transporter activity	TO:0000351 - zinc sensitivity, TO:0000016 - cobalt sensitivity, TO:0000073 - manganese sensitivity	PO:0009006 - shoot system , PO:0001170 - seed development stage , PO:0025034 - leaf 
13408	MTP5	OsMTP5	METAL TOLERANCE PROTEIN 5	metal tolerance protein 5	METAL TOLERANCE PROTEIN 5		2	LOC_Os02g58580. Cation Diffusion Facilitator (CDF) family.	 Tolerance and resistance - Stress tolerance	Os02g0832700	LOC_Os02g58580.1, LOC_Os02g58580.2, LOC_Os02g58580.4, LOC_Os02g58580.5				GO:0009624 - response to nematode, GO:0032025 - response to cobalt ion, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity	TO:0000016 - cobalt sensitivity	PO:0009062 - gynoecium 
13409	MTP6	OsMTP6	METAL TOLERANCE PROTEIN 6	metal tolerance protein 6	METAL TOLERANCE PROTEIN 6		3	LOC_Os03g22550. Q10LJ2. Cation Diffusion Facilitator (CDF) family. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os03g0346800	LOC_Os03g22550.1				GO:0032025 - response to cobalt ion, GO:0048316 - seed development, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0010043 - response to zinc ion, GO:0005774 - vacuolar membrane, GO:0046686 - response to cadmium ion	TO:0000016 - cobalt sensitivity, TO:0000351 - zinc sensitivity	PO:0001170 - seed development stage 
13410	MTP7	OsMTP7	METAL TOLERANCE PROTEIN 7	metal tolerance protein 7	METAL TOLERANCE PROTEIN 7		4	LOC_Os04g23180. Cation Diffusion Facilitator (CDF) family. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os04g0298200	LOC_Os04g23180.1				GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0008324 - cation transmembrane transporter activity	TO:0000351 - zinc sensitivity	PO:0001170 - seed development stage 
13411	MTP8	OsMTP8, MTP8.2, OsMTP8.2	METAL TOLERANCE PROTEIN 8	metal tolerance protein 8, metal tolerance protein 8.2	METAL TOLERANCE PROTEIN 8	mtp8.2	2	Q6Z7K5. Cation Diffusion Facilitator (CDF) family. a Manganese (Mn) cation diffusion facilitators (Mn-CDFs). LOC_Os02g53490. GO:1990659: sequestering of manganese ion. TO:0020091: manganese content. GO:0061687: detoxification of inorganic compound. MTP8.2 in Takemoto et al. 2017, Tsunemitsu et al. 2018.	 Tolerance and resistance - Stress tolerance	Os02g0775100	LOC_Os02g53490.1				GO:0048316 - seed development, GO:0010042 - response to manganese ion, GO:0016020 - membrane, GO:0005384 - manganese ion transmembrane transporter activity, GO:0005774 - vacuolar membrane, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0046686 - response to cadmium ion, GO:0032025 - response to cobalt ion, GO:0010045 - response to nickel ion	TO:0000073 - manganese sensitivity, TO:0000016 - cobalt sensitivity	PO:0001170 - seed development stage , PO:0009006 - shoot system , PO:0009005 - root 
13412	MTP9	OsMTP9	METAL TOLERANCE PROTEIN 9	metal tolerance protein 9	METAL TOLERANCE PROTEIN 9		1	Q9LDU0. Cation Diffusion Facilitator (CDF) family. LOC_Os01g03914. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0130000	LOC_Os01g03914.1, LOC_Os01g03914.2, LOC_Os01g03914.3				GO:0005774 - vacuolar membrane, GO:0010042 - response to manganese ion, GO:0048316 - seed development, GO:0009739 - response to gibberellin stimulus, GO:0046686 - response to cadmium ion, GO:0010039 - response to iron ion, GO:0005886 - plasma membrane, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005384 - manganese ion transmembrane transporter activity, GO:0006828 - manganese ion transport	TO:0000224 - iron sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000073 - manganese sensitivity	PO:0005059 - root endodermis , PO:0001170 - seed development stage , PO:0005360 - aleurone layer , PO:0009005 - root , PO:0005772 - exodermis 
13413	MTP11	OsMTP11, OsMTP5, MTP5	METAL TOLERANCE PROTEIN 11	metal tolerance protein 11	METAL TOLERANCE PROTEIN 11		1	Q5NA18. Cation Diffusion Facilitator (CDF) family. a Manganese (Mn) cation diffusion facilitators (Mn-CDFs). OsMTP5 in Rahim et al. 2022, Niyoifasha et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0837800	LOC_Os01g62070.1, LOC_Os01g62070.2, LOC_Os01g62070.3				GO:0010042 - response to manganese ion, GO:0010043 - response to zinc ion, GO:0005794 - Golgi apparatus, GO:0005774 - vacuolar membrane, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0010288 - response to lead ion, GO:0046689 - response to mercury ion, GO:0046687 - response to chromate, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0032025 - response to cobalt ion, GO:0010045 - response to nickel ion	TO:0000351 - zinc sensitivity, TO:0000016 - cobalt sensitivity, TO:0000021 - copper sensitivity, TO:0000034 - chromium sensitivity, TO:0000073 - manganese sensitivity, TO:0000080 - micronutrient sensitivity	PO:0000034 - vascular system 
13414	MTP11.1	OsMTP11.1	METAL TOLERANCE PROTEIN 11.1	metal tolerance protein 11.1	METAL TOLERANCE PROTEIN 11.1		5	LOC_Os05g38670. Q0DHJ5. Cation Diffusion Facilitator (CDF) family. OsMTP11.1 expression is very low in most organs and developmental stages analysed. Additionally, the alignment indicates OsMTP11.1 is lacking transmembrane domain (TMD)  five and thus the xxxxD domain. OsMTP11.1 could therefore be a non-functional genomic sequence, or may have evolved as a pseudogene. (Farthing et al. 2017) a Manganese (Mn) cation diffusion facilitators (Mn-CDFs).	 Tolerance and resistance - Stress tolerance	Os05g0461900	LOC_Os05g38670.1				GO:0005774 - vacuolar membrane, GO:0008324 - cation transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0032025 - response to cobalt ion, GO:0046686 - response to cadmium ion, GO:0048316 - seed development	TO:0000016 - cobalt sensitivity	PO:0009066 - anther , PO:0001170 - seed development stage 
13415	MTP12	OsMTP12	METAL TOLERANCE PROTEIN 12	metal tolerance protein 12	METAL TOLERANCE PROTEIN 12		8	LOC_Os08g32650. Q8H329. Cation Diffusion Facilitator (CDF) family. GO:0120127: response to zinc ion starvation. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os08g0422200	LOC_Os08g32650.1				GO:0048316 - seed development, GO:0016021 - integral to membrane, GO:0008324 - cation transmembrane transporter activity, GO:0005774 - vacuolar membrane, GO:0032025 - response to cobalt ion, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0010039 - response to iron ion	TO:0000016 - cobalt sensitivity, TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	PO:0001170 - seed development stage 
13416	ISC1	OsISC1	IRON-SULFUR CLUSTER PROTEIN 1	Iron-sulfur cluster protein 1	IRON-SULFUR CLUSTER PROTEIN 1		9		 Biochemical character	Os09g0338400	LOC_Os09g16910.1, LOC_Os09g16910.2, LOC_Os09g16910.3				GO:0030170 - pyridoxal phosphate binding, GO:0005739 - mitochondrion, GO:0006534 - cysteine metabolic process, GO:0031071 - cysteine desulfurase activity, GO:0008270 - zinc ion binding, GO:0016226 - iron-sulfur cluster assembly, GO:0005524 - ATP binding		
13417	ISC2	OsISC2	IRON-SULFUR CLUSTER PROTEIN 2	Iron-sulfur cluster protein 2	IRON-SULFUR CLUSTER PROTEIN 2		12		 Biochemical character	Os12g0287300	LOC_Os12g18900.1				GO:0030170 - pyridoxal phosphate binding, GO:0009000 - selenocysteine lyase activity, GO:0010269 - response to selenium ion, GO:0009507 - chloroplast, GO:0006790 - sulfur metabolic process, GO:0001887 - selenium metabolic process, GO:0018283 - iron incorporation into metallo-sulfur cluster		
13418	ISC3	OsISC3	IRON-SULFUR CLUSTER PROTEIN 3	Iron-sulfur cluster protein 3	IRON-SULFUR CLUSTER PROTEIN 3		9			Os09g0270900	LOC_Os09g09790.1						
13419	ISC4	OsISC4	IRON-SULFUR CLUSTER PROTEIN 4	Iron-sulfur cluster protein 4	IRON-SULFUR CLUSTER PROTEIN 4		3			Os03g0219500	LOC_Os03g11990.1, LOC_Os03g11990.2, LOC_Os03g11990.3						
13420	ISC5	OsISC5	IRON-SULFUR CLUSTER PROTEIN 5	Iron-sulfur cluster protein 5	IRON-SULFUR CLUSTER PROTEIN 5		5			Os05g0568100	LOC_Os05g49300.1				GO:0016226 - iron-sulfur cluster assembly, GO:0005506 - iron ion binding, GO:0005739 - mitochondrion, GO:0051536 - iron-sulfur cluster binding		
13421	ISC6	OsISC6	IRON-SULFUR CLUSTER PROTEIN 6	Iron-sulfur cluster protein 6	IRON-SULFUR CLUSTER PROTEIN 6		1			Os01g0662600	LOC_Os01g47340.1, LOC_Os01g47340.2				GO:0051536 - iron-sulfur cluster binding, GO:0005506 - iron ion binding, GO:0016226 - iron-sulfur cluster assembly		
13422	ISC7	OsISC7	IRON-SULFUR CLUSTER PROTEIN 7	Iron-sulfur cluster protein 7	IRON-SULFUR CLUSTER PROTEIN 7		6			Os06g0146400	LOC_Os06g05400.1				GO:0005198 - structural molecule activity, GO:0051536 - iron-sulfur cluster binding, GO:0016226 - iron-sulfur cluster assembly, GO:0009570 - chloroplast stroma		
13423	ISC8	OsISC8	IRON-SULFUR CLUSTER PROTEIN 8	Iron-sulfur cluster protein 8	IRON-SULFUR CLUSTER PROTEIN 8		12			Os12g0485500	LOC_Os12g30030.1, LOC_Os12g30030.2				GO:0051536 - iron-sulfur cluster binding, GO:0016226 - iron-sulfur cluster assembly, GO:0005198 - structural molecule activity		
13424	ISC9	OsISC9	IRON-SULFUR CLUSTER PROTEIN 9	Iron-sulfur cluster protein 9	IRON-SULFUR CLUSTER PROTEIN 9		1			Os01g0105800	LOC_Os01g01610.1				GO:0005198 - structural molecule activity, GO:0051536 - iron-sulfur cluster binding, GO:0016226 - iron-sulfur cluster assembly		
13425	ISC10	OsISC10	IRON-SULFUR CLUSTER PROTEIN 10	Iron-sulfur cluster protein 10	IRON-SULFUR CLUSTER PROTEIN 10		8			Os08g0369700	LOC_Os08g28230.1				GO:0005198 - structural molecule activity, GO:0016226 - iron-sulfur cluster assembly, GO:0051536 - iron-sulfur cluster binding		
13426	ISC11	OsISC11	IRON-SULFUR CLUSTER PROTEIN 11	Iron-sulfur cluster protein 11	IRON-SULFUR CLUSTER PROTEIN 11		3			Os03g0314700	LOC_Os03g20010.1, LOC_Os03g20010.2				GO:0016226 - iron-sulfur cluster assembly, GO:0009507 - chloroplast, GO:0051536 - iron-sulfur cluster binding, GO:0005506 - iron ion binding		
13427	ISC12	OsISC12	IRON-SULFUR CLUSTER PROTEIN 12	Iron-sulfur cluster protein 12	IRON-SULFUR CLUSTER PROTEIN 12		11			Os11g0181500	LOC_Os11g07916.1				GO:0009507 - chloroplast, GO:0051536 - iron-sulfur cluster binding, GO:0016226 - iron-sulfur cluster assembly, GO:0009658 - chloroplast organization, GO:0005506 - iron ion binding		
13428	ISC13	OsISC13	IRON-SULFUR CLUSTER PROTEIN 13	Iron-sulfur cluster protein 13	IRON-SULFUR CLUSTER PROTEIN 13		6			Os06g0694500	LOC_Os06g47940.1				GO:0005506 - iron ion binding, GO:0009507 - chloroplast, GO:0016226 - iron-sulfur cluster assembly, GO:0051536 - iron-sulfur cluster binding		
13429	ISC14	OsISC14	IRON-SULFUR CLUSTER PROTEIN 14	Iron-sulfur cluster protein 14	IRON-SULFUR CLUSTER PROTEIN 14		12	Q84LK7.		Os12g0176200	LOC_Os12g07700.1				GO:0009658 - chloroplast organization, GO:0009570 - chloroplast stroma, GO:0005506 - iron ion binding, GO:0051536 - iron-sulfur cluster binding, GO:0016226 - iron-sulfur cluster assembly		
13430	ISC15	OsISC15	IRON-SULFUR CLUSTER PROTEIN 15	Iron-sulfur cluster protein 15	IRON-SULFUR CLUSTER PROTEIN 15		5			Os05g0155300	LOC_Os05g06330.1				GO:0005524 - ATP binding, GO:0005506 - iron ion binding, GO:0016226 - iron-sulfur cluster assembly, GO:0005739 - mitochondrion, GO:0005507 - copper ion binding, GO:0051536 - iron-sulfur cluster binding		
13431	ISC19	OsISC19	IRON-SULFUR CLUSTER PROTEIN 19	Iron-sulfur cluster protein 19	IRON-SULFUR CLUSTER PROTEIN 19		9			Os09g0437900	LOC_Os09g26650.1				GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding		
13432	ISC20	OsISC20	IRON-SULFUR CLUSTER PROTEIN 20	Iron-sulfur cluster protein 20	IRON-SULFUR CLUSTER PROTEIN 20		7			Os07g0110300	LOC_Os07g01930.1				GO:0048868 - pollen tube development, GO:0046872 - metal ion binding, GO:0009055 - electron carrier activity, GO:0051537 - 2 iron, 2 sulfur cluster binding		
13433	ISC21	OsISC21	IRON-SULFUR CLUSTER PROTEIN 21	Iron-sulfur cluster protein 21	IRON-SULFUR CLUSTER PROTEIN 21		2		 Biochemical character	Os02g0277600	LOC_Os02g17700.1				GO:0005886 - plasma membrane, GO:0005759 - mitochondrial matrix, GO:0016491 - oxidoreductase activity		
13434	ISC22	OsISC22	IRON-SULFUR CLUSTER PROTEIN 22	Iron-sulfur cluster protein 22	IRON-SULFUR CLUSTER PROTEIN 22		1		 Biochemical character	Os01g0783600	LOC_Os01g57460.1				GO:0005739 - mitochondrion, GO:0004322 - ferroxidase activity, GO:0009060 - aerobic respiration, GO:0008199 - ferric iron binding, GO:0016226 - iron-sulfur cluster assembly, GO:0042542 - response to hydrogen peroxide		
13435	ISC23	OsISC23	IRON-SULFUR CLUSTER PROTEIN 23	Iron-sulfur cluster protein 23, Heat-shock protein homolog dnaK protein	IRON-SULFUR CLUSTER PROTEIN 23		2	D15740.		Os02g0774300	LOC_Os02g53420.1				GO:0006457 - protein folding, GO:0005524 - ATP binding		
13436	ISC24	OsISC24, HSP70, OsHSP70	IRON-SULFUR CLUSTER PROTEIN 24	Iron-sulfur cluster protein 24, heat shock protein Hsp70	IRON-SULFUR CLUSTER PROTEIN 24		3		 Tolerance and resistance - Stress tolerance	Os03g0113700	LOC_Os03g02260.1				GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0006457 - protein folding, GO:0009408 - response to heat, GO:0009735 - response to cytokinin stimulus	TO:0000259 - heat tolerance, TO:0000167 - cytokinin sensitivity	
13437	ISC35	OsISC35	IRON-SULFUR CLUSTER PROTEIN 35	Iron-sulfur cluster protein 35	IRON-SULFUR CLUSTER PROTEIN 35		3		 Biochemical character	Os03g0206300	LOC_Os03g10850.1, LOC_Os03g10850.2				GO:0016972 - thiol oxidase activity		
13438	ISC36	OsISC36	IRON-SULFUR CLUSTER PROTEIN 36	Iron-sulfur cluster protein 36	IRON-SULFUR CLUSTER PROTEIN 36		1			Os01g0719700	LOC_Os01g52170.1				GO:0005524 - ATP binding		
13439	ISC37	OsISC37	IRON-SULFUR CLUSTER PROTEIN 37	Iron-sulfur cluster protein 37	IRON-SULFUR CLUSTER PROTEIN 37		3			Os03g0627300	LOC_Os03g42880.1						
13440	ISC38	OsISC38	IRON-SULFUR CLUSTER PROTEIN 38	Iron-sulfur cluster protein 38	IRON-SULFUR CLUSTER PROTEIN 38		3			Os03g0748700	LOC_Os03g53750.1, LOC_Os03g53750.2						
13441	ISC39	OsISC39	IRON-SULFUR CLUSTER PROTEIN 39	Iron-sulfur cluster protein 39	IRON-SULFUR CLUSTER PROTEIN 39		4			Os04g0615500	LOC_Os04g52520.1, LOC_Os04g52520.2, LOC_Os04g52520.3, LOC_Os04g52520.4				GO:0003723 - RNA binding		
13442	ISC40	OsISC40	IRON-SULFUR CLUSTER PROTEIN 40	Iron-sulfur cluster protein 40	IRON-SULFUR CLUSTER PROTEIN 40		4			Os04g0628000	LOC_Os04g53612.1				GO:0003723 - RNA binding		
13443	ISC41	OsISC41	IRON-SULFUR CLUSTER PROTEIN 41	Iron-sulfur cluster protein 41	IRON-SULFUR CLUSTER PROTEIN 41		2			Os02g0732900	LOC_Os02g50010.1				GO:0003723 - RNA binding		
13444	ISC42	OsISC42	IRON-SULFUR CLUSTER PROTEIN 42	Iron-sulfur cluster protein 42	IRON-SULFUR CLUSTER PROTEIN 42		8			Os08g0323400	LOC_Os08g23410.1				GO:0005506 - iron ion binding, GO:0009535 - chloroplast thylakoid membrane		
13445	ISC43	OsISC43	IRON-SULFUR CLUSTER PROTEIN 43	Iron-sulfur cluster protein 43	IRON-SULFUR CLUSTER PROTEIN 43		2			Os02g0601100	LOC_Os02g38900.1				GO:0005829 - cytosol, GO:0051536 - iron-sulfur cluster binding		
13446	ISC44	OsISC44	IRON-SULFUR CLUSTER PROTEIN 44	Iron-sulfur cluster protein 44	IRON-SULFUR CLUSTER PROTEIN 44		4			Os04g0485400	LOC_Os04g40880.1, LOC_Os04g40880.2, LOC_Os04g40880.3						
13447	_	OsHSBP1	_	HSF-binding protein 1			9	BE040146.	 Tolerance and resistance - Stress tolerance	Os09g0375100	LOC_Os09g20830.3, LOC_Os09g20830.4, LOC_Os09g20830.5						
13448	_	OsHSBP2	_	HSF-binding protein 2			6	AU075659.	 Tolerance and resistance - Stress tolerance	Os06g0274000	LOC_Os06g16270.1				GO:0006950 - response to stress		
13449	PRX11	OsPOD, prx11, Osprx11, OsPRX11	PEROXIDASE 11	peroxidase, class III peroxidase 11	PEROXIDASE 11		1	BN000540.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0294700	LOC_Os01g19020.1				GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity	TO:0000303 - cold tolerance, TO:0002657 - oxidative stress	PO:0025034 - leaf 
13450	BIPP2C1	OsBIPP2C1, OsPP45, PP45	BTH-INDUCED PROTEIN PHOSPHATASE 2C 1	Protein phosphatase 45, BTH-induced protein phosphatase 2C 1	BTH-INDUCED PROTEIN PHOSPHATASE 2C 1		3	AY603974, BI118687. Q6J2K6. Q10QL5. a protein phosphatase 2C induced by benzothiadiazole (BTH).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0192500	LOC_Os03g09220.3, LOC_Os03g09220.2, LOC_Os03g09220.6, LOC_Os03g09220.5, LOC_Os03g09220.4, LOC_Os03g09220.1				GO:0042542 - response to hydrogen peroxide, GO:0046872 - metal ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0008152 - metabolic process, GO:0004721 - phosphoprotein phosphatase activity	TO:0000615 - abscisic acid sensitivity	
13452	EAT1	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD, DLN120, OsDLN120	ETERNAL TAPETUM 1	ETERNAL TAPETUM1, basic helix-loop-helix protein 141, DELAYED TAPETUM DEGENERATION 1, delayed tapetum degeneration, DLN repressor 120, DLN motif protein 120		eat1, eat1-1, eat1-2, eat1-3, dtd	4	a basic helix-loop-helix transcription factor. PO:0030123: panicle inflorescence.	 Other,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os04g0599300	LOC_Os04g51070.1				GO:0048658 - tapetal layer development, GO:0043067 - regulation of programmed cell death, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0010234 - tapetal cell fate specification, GO:0009751 - response to salicylic acid stimulus, GO:0009266 - response to temperature stimulus, GO:0048654 - anther morphogenesis, GO:0048653 - anther development, GO:0009555 - pollen development, GO:0048657 - tapetal cell differentiation	TO:0000437 - male sterility, TO:0000432 - temperature response trait, TO:0000259 - heat tolerance	PO:0009066 - anther , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
13453	RADC1	OsAP25, Radc1, OsRADC1, AP25	RICE ANTHER DOWN-REGULATED BY CHILLING 1	aspartic protease 25, Aspartic Protease25, rice anther down-regulated by chilling 1	ASPARTIC PROTEASE 25		3	AB122090. AU172968, AU166209, AU174285, AU174286.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0186900	LOC_Os03g08790.1				GO:0006508 - proteolysis, GO:0048046 - apoplast, GO:0048653 - anther development, GO:0009505 - plant-type cell wall, GO:0004190 - aspartic-type endopeptidase activity, GO:0012501 - programmed cell death	TO:0000437 - male sterility, TO:0000432 - temperature response trait	PO:0009066 - anther , PO:0001004 - anther development stage 
13454	AP37 	OsAP37	ASPARTIC PROTEASE 37	aspartic protease 37, E. coli cation transport protein ChaC homolog	ASPARTIC PROTEASE 37		4	D24715, AU173362.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os04g0448500	LOC_Os04g37570.1				GO:0048653 - anther development, GO:0004190 - aspartic-type endopeptidase activity, GO:0006508 - proteolysis, GO:0012501 - programmed cell death	TO:0000437 - male sterility, TO:0000432 - temperature response trait	PO:0001004 - anther development stage 
13455	_	OsAP19	_	aspartic protease 19			2		 Biochemical character	Os02g0473200	LOC_Os02g27360.1, LOC_Os02g27360.2				GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity		
13456	GPX1	OsGpx1, GPX1, OsGPx01, OsGPX1	GLUTATHIONE PEROXIDASE 1	glutathione peroxidase 1	GLUTATHIONE PEROXIDASE 1		4		 Vegetative organ - Root,  Seed,  Vegetative organ - Culm,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os04g0556300	LOC_Os04g46960.4, LOC_Os04g46960.3, LOC_Os04g46960.2, LOC_Os04g46960.1				GO:0005739 - mitochondrion, GO:0010332 - response to gamma radiation, GO:0045454 - cell redox homeostasis, GO:0048364 - root development, GO:0004602 - glutathione peroxidase activity, GO:0010109 - regulation of photosynthesis, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress	TO:0000207 - plant height, TO:0000456 - spikelet number, TO:0000656 - root development trait, TO:0000605 - hydrogen peroxide content, TO:0000429 - salt sensitivity, TO:0000445 - seed number	PO:0007520 - root development stage 
13457	EIF4A2	eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23	EUKARYOTIC INITIATION FACTOR 4A-2	eukaryotic initiation factor 4A-2, eukaryotic initiation factor 4A, RNA helicase 23. Eukaryotic initiation factor 4A-3	EUKARYOTIC INITIATION FACTOR 4A-2		2	AB046414, AB046415. Q6Z2Z4. an ATP-Dependent RNA Helicase. eIF4A-3 in Xu et al. 2015, Sim et al. 2018. DEAD-box RNA helicase protein. LOC_Os02g05330.	 Biochemical character	Os02g0146600	LOC_Os02g05330.1				GO:0008026 - ATP-dependent helicase activity, GO:0046686 - response to cadmium ion, GO:0009505 - plant-type cell wall, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0003743 - translation initiation factor activity, GO:0006413 - translational initiation, GO:0005730 - nucleolus, GO:0005886 - plasma membrane		
13458	_	OsMED15_1, MED15_1, OsKIX_3, KIX_3	_	KIX domain protein 3, Mediator 15_1			4	an ortholog of MED15. LOC_Os04g03860.	 Other,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os04g0127800	LOC_Os04g03860.1				GO:0003712 - transcription cofactor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048316 - seed development	TO:0000734 - grain length, TO:0000653 - seed development trait, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield	PO:0001170 - seed development stage 
13459	_	OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118, OsFBX270, FBX270	_	KIX domain protein 5, F-box protein 270, F-box protein 419, endosperm-specific gene 118, F-box-type E3 ubiquitin ligase X270			8	LOC_Os08g09700. OsFBX270 in Thakur et al. 2013. Os_F0547 ih Hua et al. 2011.		Os08g0196900	LOC_Os08g09700.1, LOC_Os08g09700.2						
13460	_	OsFBX283, OsKIX_6, OsFbox434, Os_F0157, OsFBX283, FBX283	_	KIX domain protein 6, F-box protein 283, F-box protein 434, F-box-type E3 ubiquitin ligase X283			8	LOC_Os08g18000. OsFBX283 in Thakur et al. 2013. Os_F0157 in Hua et al. 2011.		Os08g0281600	LOC_Os08g18000.1						
13461	_	OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121, OsFBX289, FBX289	_	KIX domain protein 7, F-box protein 289, F-box protein 442, endosperm-specific gene 121, F-box-type E3 ubiquitin ligase X289			8	LOC_Os08g28940. OsFBX289 in Thakur et al. 2013. Os_F0407 in Hua et al. 2011.		Os08g0377100	LOC_Os08g28940.1						
13462	_	OsKIX_8	_	KIX domain protein 8			8	LOC_Os08g28960.			LOC_Os08g28960						
13463	_	OsKIX_9	_	KIX domain protein 9			8			Os08g0523600	LOC_Os08g41210.1, LOC_Os08g41210.2, LOC_Os08g41210.3, LOC_Os08g41210.4						
13464	_	OsMED15_2, OsKIX_10, MED15_2, KIX_10	_	KIX domain protein 10, Mediator 15_2			8	an ortholog of MED15. LOC_Os08g45080.	 Other	Os08g0564800	LOC_Os08g45080.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003712 - transcription cofactor activity		
13465	_	OsKIX_11	_	KIX domain protein 11			12			Os12g0245100	LOC_Os12g14150.1						
13466	_	OsHOS1, HOS1	_	high expression of osmotically responsive gene 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1, HIGH OSMOTICALLY RESPONSIVE GENE 1			3	E3-ubiquitin ligase. JQ866627.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0737200	LOC_Os03g52700.1				GO:0001966 - thigmotaxis, GO:0009612 - response to mechanical stimulus, GO:0050793 - regulation of developmental process, GO:0040008 - regulation of growth, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016874 - ligase activity, GO:0009409 - response to cold	TO:0002710 - root shape, TO:0000303 - cold tolerance	
13467	_	OsRZ1	_	zinc finger-containing glycine-rich RNA-binding protein 1			3		 Tolerance and resistance - Stress tolerance	Os03g0836200	LOC_Os03g61990.1, LOC_Os03g61990.2, LOC_Os03g61990.3, LOC_Os03g61990.4, LOC_Os03g61990.5				GO:0009631 - cold acclimation, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
13468	_	OsRZ2	_	zinc finger-containing glycine-rich RNA-binding protein 2			7	OsRZ2 possesses RNA chaperone activity.	 Tolerance and resistance - Stress tolerance	Os07g0187300	LOC_Os07g08960.1				GO:0008270 - zinc ion binding, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005730 - nucleolus		
13469	_	OsRZ3	_	zinc finger-containing glycine-rich RNA-binding protein 3			3		 Tolerance and resistance - Stress tolerance	Os03g0681900	LOC_Os03g47800.1				GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding, GO:0005730 - nucleolus		
13470	TGW2	OsFWL1, FWL1, OsTGW2, OsCNR1, CNR1, OsPCR3, PCR3, OsFWL3, FWL3	THOUSAND GRAIN WEIGHT 2	FW2.2-like 1, FRUIT-WEIGHT2.2-LIKE 1, CELL NUMBER REGULATOR 1, plant cadmium resistance protein 3		osfwl1a, osfwl1b	2	OsFWL3 in Ran et al. 2023. TO:0000975: grain width. TO:0006059: cadmium content trait.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os02g0763000	LOC_Os02g52550.1				GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0008283 - cell proliferation, GO:0016049 - cell growth	TO:0000734 - grain length, TO:0000605 - hydrogen peroxide content, TO:0000590 - grain weight, TO:0000399 - grain thickness	
13471	FWL2	OsFWL2, OsPCR1, PCR1, OsFWL1, FWL1	FRUIT-WEIGHT2.2-LIKE 2	FW2.2-like 2, plant cadmium resistance protein 1, FW2.2-Like 1	FRUIT-WEIGHT2.2-LIKE 2		2	OsFWL1 in Ran et al. 2023. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os02g0579800	LOC_Os02g36940.1				GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion	TO:0000605 - hydrogen peroxide content	
13472	FWL3	OsFWL3, OsFWL2/OsPCR5, OsFWL2, OsPCR5, FWL2, PCR5	FRUIT-WEIGHT2.2-LIKE 3	FW2.2-like 3	FRUIT-WEIGHT2.2-LIKE 3	osfwl3	2	homologous to the tomato fruit-weight 2.2. OsFWL2/OsPCR5 in Ran et al. 2023. 	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os02g0580000	LOC_Os02g36950.1, LOC_Os02g36950.2				GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion	TO:0000080 - micronutrient sensitivity, TO:0000590 - grain weight, TO:0000734 - grain length	
13473	FWL4	OsFWL4, OsFWL8, FWL8	FRUIT-WEIGHT2.2-LIKE 4	FW2.2-like 4	FRUIT-WEIGHT2.2-LIKE 4	osfwl4a, osfwl4b	3	OsFWL8 in Ran et al. 2023. TO:1000056: shoot system cadmium content.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os03g0829900	LOC_Os03g61440.1				GO:0005886 - plasma membrane, GO:0051781 - positive regulation of cell division, GO:0015691 - cadmium ion transport, GO:0046686 - response to cadmium ion	TO:0000449 - grain yield per plant, TO:0000370 - leaf width, TO:0000080 - micronutrient sensitivity, TO:0000346 - tiller number, TO:0000592 - 1000-dehulled grain weight	PO:0009047 - stem , PO:0009006 - shoot system , PO:0009089 - endosperm 
13474	PCR1	OsFWL5, FWL5, OsPcr1, OsPCR1, OsFWL5/OsPCR1, OsFWL7, FWL7	PLANT CADMIUM RESISTANCE 1	FW2.2-like 5, fruit-weight 2.2-like 5, Plant cadmium resistance 1	FW2.2-LIKE 5	osfwl5, osfwl5-1, osfwl5-2, ospcr1	10	AAK52582. rice AtPcr homolog. PLAC8 domain containing protein family. homologous to the tomato fruit-weight 2.2. Cd transporter. OsFWL7 in Ran et al. 2023. TO:0006053: zinc concentration. TO:0006059: cadmium concentration. TO:0006059: cadmium content trait. GO:1900426: positive regulation of defense response to bacterium. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1903409: reactive oxygen species biosynthetic process. TO:0020096: mineral and ion transport trait.	 Seed - Morphological traits,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0112100	LOC_Os10g02300.1, LOC_Os10g02300.3, LOC_Os10g02300.2				GO:0002237 - response to molecule of bacterial origin, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010942 - positive regulation of cell death, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0015691 - cadmium ion transport, GO:0070574 - cadmium ion transmembrane transport, GO:0055065 - metal ion homeostasis, GO:0010043 - response to zinc ion, GO:0048366 - leaf development	TO:0000655 - leaf development trait, TO:0000351 - zinc sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000203 - bacterial leaf streak disease resistance, TO:0000590 - grain weight, TO:0000080 - micronutrient sensitivity, TO:0000397 - grain size	
13475	FWL6	OsFWL6, OsCNR10, CNR10, OsFWL5/OsPCR1, OsFWL5, OsPCR1, FWL5, PCR1	FW2.2-LIKE 6	FW2.2-like 6, fruit-weight 2.2-like 6, CELL NUMBER REGULATOR10, plant cadmium resistance 1	FW2.2-LIKE 6		3	homologous to the tomato fruit-weight 2.2. OsFWL5/OsPCR1 n Ran et al. 2023. 	 Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0830200	LOC_Os03g61470.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0046686 - response to cadmium ion, GO:0048366 - leaf development, GO:0005886 - plasma membrane	TO:0000547 - primary branch number, TO:0000396 - grain yield, TO:0000080 - micronutrient sensitivity, TO:0000447 - filled grain number, TO:0000655 - leaf development trait	
13476	FWL7	OsFWL7, PGPS/D12, PGPS, D12, OsFWL6, FWL6	FRUIT-WEIGHT2.2-LIKE 7	FW2.2-like 7	FRUIT-WEIGHT2.2-LIKE 7	osfwl7, osfwl7a, osfwl7b	3	homologous to the tomato fruit-weight 2.2. OsFWL6 in Ran et al. 2023. TO:0006059: cadmium content trait. TO:1000056: shoot system cadmium content. TO:1000030: root system cadmium content. TO:0020091: manganese content. TO:1000059: shoot system copper content. TO:1000033: root system copper content. TO:1000060: shoot system iron content. TO:1000050: root system zinc content.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os03g0830500	LOC_Os03g61500.1				GO:0048366 - leaf development, GO:0005886 - plasma membrane, GO:0015691 - cadmium ion transport, GO:0010233 - phloem transport, GO:0046686 - response to cadmium ion	TO:0000655 - leaf development trait, TO:0000080 - micronutrient sensitivity, TO:0000465 - mineral and ion content related trait, TO:0000227 - root length, TO:0000552 - shoot dry weight, TO:0000636 - relative shoot dry weight	PO:0009005 - root 
13477	FWL8	OsFWL8	FRUIT-WEIGHT2.2-LIKE 8	FW2.2-like 8	FRUIT-WEIGHT2.2-LIKE 8		3	homologous to the tomato fruit-weight 2.2.	 Tolerance and resistance - Stress tolerance	Os03g0830300	LOC_Os03g61480.1				GO:0046686 - response to cadmium ion, GO:0005634 - nucleus	TO:0000080 - micronutrient sensitivity	
13478	MAP3K6	OsMAP3K6, OsMKKK70, MKKK70	MAPK KINASE KINASE 6	MAPK KINASE KINASE6, Mitogen Activated Protein Kinase Kinase Kinase 70	MAPK KINASE KINASE 6	osmkkk70	1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0699500	LOC_Os01g50410.1				GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0009409 - response to cold, GO:0048653 - anther development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000214 - anther shape, TO:0000187 - anther color, TO:0000421 - pollen fertility, TO:0002675 - gibberellic acid content, TO:0000303 - cold tolerance, TO:0000455 - seed set percent	PO:0001004 - anther development stage 
13479	_	OsSUV3, SUV3	_	SUV3 helicase, suppressor of Var 3			3	an NTP-dependent RNA/DNA helicase. a subunit of the degradosome complex. GQ982584.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0746500 	LOC_Os03g53500.1				GO:0008186 - RNA-dependent ATPase activity, GO:0016070 - RNA metabolic process, GO:0009561 - megagametogenesis, GO:0010501 - RNA secondary structure unwinding, GO:0032508 - DNA duplex unwinding, GO:0003676 - nucleic acid binding, GO:0004004 - ATP-dependent RNA helicase activity, GO:0003678 - DNA helicase activity, GO:0008094 - DNA-dependent ATPase activity, GO:0071025 - RNA surveillance, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0009555 - pollen development, GO:0009651 - response to salt stress, GO:0010043 - response to zinc ion, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance, TO:0000351 - zinc sensitivity	
13480	OXO2	Osoxo4, OsOxO2, OsGLP3-4, GLP3-4, OsCDP3.7, CDP3.7	OXALATE OXIDASE 2	oxalate oxidase 4, oxalate oxidase 2, german-like protein 3-4, cupin domain protein 3.7	OXALATE OXIDASE 2		3	Q851J9. OsOxO4 in Molla et al. 2013. GO:2000031: regulation of salicylic acid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0693800 	LOC_Os03g48760.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0030145 - manganese ion binding	TO:0000605 - hydrogen peroxide content, TO:0000477 - panicle blast disease resistance	
13481	_	HEN1, Os-HEN1	_	HUA1 ENHANCER1		Os-hen1-3, waf1-1, waf1-2		methyltransferase.	 Biochemical character								
13482	_	OsGCS, GCS, gamma-ECS/GCS, gamma-ECS	_	glutamylcysteine synthetase, gamma-glutamylcysteine synthetase		osgcs-2, osgcs-3			 Biochemical character								
13483	DET1	OsDET1	DE-ETIOLATED1			yel-sdj	1	GQ898934, CT831157. miR168b-target. an ortholog of AtDET1. GO:1990756: ubiquitin ligase-substrate adaptor activity. TO:0020076: phenolic compound content. TO:0000975: grain width.	 Coloration - Chlorophyll,  Seed - Morphological traits - Grain shape,  Coloration - Others,  Seed - Morphological traits - Embryo	Os01g0104600 	LOC_Os01g01484.1, LOC_Os01g01484.2, LOC_Os01g01484.4, LOC_Os01g01484.5				GO:0007623 - circadian rhythm, GO:0031625 - ubiquitin protein ligase binding, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0048316 - seed development, GO:0009793 - embryonic development ending in seed dormancy, GO:0005634 - nucleus, GO:0016567 - protein ubiquitination, GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process, GO:0009416 - response to light stimulus, GO:0031461 - cullin-RING ubiquitin ligase complex	TO:0000290 - flavonoid content, TO:0000269 - 100-seed weight, TO:0000399 - grain thickness, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000653 - seed development trait, TO:0000064 - embryo related trait, TO:0000707 - pericarp color, TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content	PO:0009010 - seed , PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0020104 - leaf sheath 
13484	CTHSP70-1	OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6, OsHSP70.6, HSP70.6	CYTOSOLIC HEAT SHOCK PROTEIN 70-1	cytosolic HSP70-1, cytosolic heat shock protein 70-1, heat-shock protein cognate 70, Mediator 37_6	CYTOSOLIC HEAT SHOCK PROTEIN 70-1		5	D22906. OsHSP70.6 in Feijo et al. 2023.	 Tolerance and resistance - Stress tolerance	Os05g0460000	LOC_Os05g38530.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009615 - response to virus	TO:0000188 - drought sensitivity	
13485	EXPA8	OsEXPA8, OsEXP8, osaEXPa1.17	ALPHA-EXPANSIN 8	Expansin-A8, Alpha-expansin-8	ALPHA-EXPANSIN 8		1	Q9XHX0. GO:0090548: response to nitrate starvation.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os01g0248900	LOC_Os01g14650.1				GO:0048364 - root development, GO:0010269 - response to selenium ion, GO:0048767 - root hair elongation, GO:0016020 - membrane, GO:0016036 - cellular response to phosphate starvation, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0005576 - extracellular region	TO:0000207 - plant height, TO:0000656 - root development trait, TO:0000227 - root length, TO:0006001 - salt tolerance, TO:0000032 - selenium sensitivity, TO:0001013 - lateral root number, TO:0002665 - root hair length	PO:0009005 - root , PO:0007520 - root development stage , PO:0009006 - shoot system 
13486	MPS	OsMPS, Os2R_MYB25, 2R_MYB25	MULTIPASS	R2R3-MYB Transcription Factor 25	MULTIPASS		2	a rice R2R3-type MYB transcription factor. R2R3-MYB.	 Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance	Os02g0618400	LOC_Os02g40530.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0031540 - regulation of anthocyanin biosynthetic process		
13487	LAC15	OsLAC, LAC, OsLAC15, OsLAC13, LAC13	LACCASE 15	lactase 15, laccase-13, laccase 13	LACCASE 15	lac13	5	a laccase-like protein. laccase-like multicopper oxidase. LMCO. P0DKK6. GO:0052716: hydroquinone:oxygen oxidoreductase activity. OsLAC13 in Yu et al. 2017. GO: 2000762: regulation of phenylpropanoid metabolic process.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character	Os05g0458600	LOC_Os05g38420.1				GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0010821 - regulation of mitochondrion organization, GO:0008643 - carbohydrate transport, GO:0005507 - copper ion binding, GO:0009414 - response to water deprivation, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0009269 - response to desiccation, GO:0009698 - phenylpropanoid metabolic process, GO:0052386 - cell wall thickening	TO:0000180 - spikelet fertility, TO:0000394 - drought related trait	PO:0009037 - lemma , PO:0009030 - carpel , PO:0009038 - palea , PO:0009066 - anther 
13488	_	LTPG1, OsLTPG1, OsLTPg1, AGP, OsAGP, OsXYLP8, XYLP8, LTPL65	_	GPI-anchored non-specific lipid transfer protein 1, type G nsLTP 1, type G non-specific lipid transfer protein 1, Arabinogalactan protein			1	LTPL65 in Mo et al. 2023. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os01g0814100	LOC_Os01g59870.1				GO:0008233 - peptidase activity, GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0009066 - anther , PO:0009010 - seed 
13489	LTPG2	OsLTPG2, OsLTPg2, LTPL82	GPI-ANCHORED NON-SPECIFIC LIPID TRANSFER PROTEIN 2	GPI-anchored non-specific lipid transfer protein 2, type G nsLTP 2, type G non-specific lipid transfer protein 2	GPI-ANCHORED NON-SPECIFIC LIPID TRANSFER PROTEIN 2	osltpl82	3	LTPL82 in Huang et al. 2016, Yang et al. 2024. a member of fatty acid metabolic gene cluster on chromosome 3 (FGC3). PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Character as QTL - Yield and productivity,  Biochemical character	Os03g0167000	LOC_Os03g07100.1				GO:0080051 - cutin transport, GO:0048437 - floral organ development, GO:0009555 - pollen development, GO:0048658 - tapetal layer development, GO:0048046 - apoplast, GO:0010143 - cutin biosynthetic process, GO:0048653 - anther development, GO:0006869 - lipid transport, GO:0008233 - peptidase activity, GO:0016020 - membrane, GO:0008289 - lipid binding	TO:0000449 - grain yield per plant, TO:0000218 - pollen abortion type, TO:0000187 - anther color, TO:0000531 - anther length, TO:0000437 - male sterility	PO:0025385 - cutin , PO:0009049 - inflorescence , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
13490	_	OsLTPG3, OsLTPg3	_	GPI-anchored non-specific lipid transfer protein 3, type G nsLTP 3, type G non-specific lipid transfer protein 3			3			Os03g0192600	LOC_Os03g09230.1, LOC_Os03g09230.2						
13491	_	OsLTPG4, OsLTPg4	_	GPI-anchored non-specific lipid transfer protein 4, type G nsLTP 4, type G non-specific lipid transfer protein 4			3			Os03g0323900	LOC_Os03g20760.1						
13492	_	LTPG5, OsLTPG5, OsLTPg5, OsHyPRP10, HyPRP10	_	GPI-anchored non-specific lipid transfer protein 5, type G nsLTP 5, type G non-specific lipid transfer protein 5, Hybrid Proline-Rich Protein 10			3			Os03g0385100	LOC_Os03g26800.1						
13493	_	OsLTPG7, OsLTPg7	_	GPI-anchored non-specific lipid transfer protein 7, type G nsLTP 7, type G non-specific lipid transfer protein 7			3	LOC_Os03g57970. AK061537.	 Tolerance and resistance - Stress tolerance	Os03g0793800	LOC_Os03g57970.1, LOC_Os03g57970.2				GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
13494	_	OsLTPG8, OsLTPg8	_	GPI-anchored non-specific lipid transfer protein 8, type G nsLTP 8, type G non-specific lipid transfer protein 8			3			Os03g0793900	LOC_Os03g57980.1						
13495	_	OsLTPG9, OsLTPg9	_	GPI-anchored non-specific lipid transfer protein 9, type G nsLTP 9, type G non-specific lipid transfer protein 9			3			Os03g0794000	LOC_Os03g57990.1						
13496	LTPG10	OsLTPG10, OsLTPg10, LTPL83	TYPE G NON-SPECIFIC LIPID TRANSFER PROTEIN 10	GPI-anchored non-specific lipid transfer protein 10, type G nsLTP 10, type G non-specific lipid transfer protein 10	TYPE G NON-SPECIFIC LIPID TRANSFER PROTEIN 10		3	LTPL83 in Huang et al. 2016.	 Biochemical character	Os03g0804200	LOC_Os03g58940.1				GO:0008289 - lipid binding, GO:0008233 - peptidase activity, GO:0006869 - lipid transport		
13497	_	OsLTPG11, OsLTPg11	_	GPI-anchored non-specific lipid transfer protein 11, type G nsLTP 11, type G non-specific lipid transfer protein 11			4			Os04g0462200	LOC_Os04g38840.1						
13498	_	OsLTPG12, OsLTPg12	_	GPI-anchored non-specific lipid transfer protein 12, type G nsLTP 12, type G non-specific lipid transfer protein 12			5			Os05g0489200	LOC_Os05g41030.1						
13499	_	OsLTPG13, OsLTPg13	_	GPI-anchored non-specific lipid transfer protein 13, type G nsLTP 13, type G non-specific lipid transfer protein 13			6			Os06g0686400	LOC_Os06g47200.1, LOC_Os06g47200.2, LOC_Os06g47200.3						
13500	_	OsLTPG15, OsLTPg15	_	GPI-anchored non-specific lipid transfer protein 15, type G nsLTP 15, type G non-specific lipid transfer protein 15			7			Os07g0175000	LOC_Os07g07870.1						
13501	_	OsLTPG16, OsLTPg16	_	GPI-anchored non-specific lipid transfer protein 16, type G nsLTP 16, type G non-specific lipid transfer protein 16			7			Os07g0174900	LOC_Os07g07860.1						
13502	_	OsLTPG17, OsLTPg17	_	GPI-anchored non-specific lipid transfer protein 17, type G nsLTP 17, type G non-specific lipid transfer protein 17			7			Os07g0175500	LOC_Os07g07920.1						
13503	_	OsLTPG18, OsLTPg18	_	GPI-anchored non-specific lipid transfer protein 18, type G nsLTP 18, type G non-specific lipid transfer protein 18			7			Os07g0175600	LOC_Os07g07930.1						
13504	_	OsLTPG19, OsLTPg19	_	GPI-anchored non-specific lipid transfer protein 19, type G nsLTP 19, type G non-specific lipid transfer protein 19			7			Os07g0198300	LOC_Os07g09970.1						
13505	_	OsLTPG20, OsLTPg20	_	GPI-anchored non-specific lipid transfer protein 20, type G nsLTP 20, type G non-specific lipid transfer protein 20			7			Os07g0489000	LOC_Os07g30590.1						
13506	_	OsLTPG22, OsLTPg22	_	GPI-anchored non-specific lipid transfer protein 22, type G nsLTP 22, type G non-specific lipid transfer protein 22			8			Os08g0532800	LOC_Os08g42040.1, LOC_Os08g42040.2						
13507	_	OsLTPG23, OsLTPg23	_	GPI-anchored non-specific lipid transfer protein 23, type G nsLTP 23, type G non-specific lipid transfer protein 23			11			Os11g0583100	LOC_Os11g37320.1						
13508	_	OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1	_	GPI-anchored non-specific lipid transfer protein 24, type G nsLTP 24, type G non-specific lipid transfer protein 24			6	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence.		Os06g0711900	LOC_Os06g49770.2, LOC_Os06g49770.1						
13509	_	OsLTPG26	_	GPI-anchored non-specific lipid transfer protein 26, type G nsLTP 26			6			Os03g0664400	LOC_Os03g46150.1, LOC_Os03g46150.2						
13510	_	OsLTP1.1, T42, OsLtp1.1, LTP1.1	_	non-specific lipid transfer protein 1.1, lipid transfer protein 1.1, type 1 non-specific lipid transfer protein 1			1		 Tolerance and resistance - Stress tolerance	Os01g0219500	LOC_Os01g12020.1					TO:0000432 - temperature response trait	PO:0009066 - anther 
13511	PTD1	OsLTP1.2, OsLtpI.2, OsPTD1, Psd1	PHOTOPERIOD-THERMO-SENSITIVE DWARFISM 1	non-specific lipid transfer protein 1.2, lipid transfer protein 1.2, type 1 non-specific lipid transfer protein 2, Photoperiod-thermo-sensitive dwarfism 1, Photoperiod-sensitive dwarf 1		Ptd1	1		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character	Os01g0822900	LOC_Os01g60740.1				GO:0009409 - response to cold, GO:0006869 - lipid transport, GO:0009414 - response to water deprivation, GO:0008289 - lipid binding, GO:0009611 - response to wounding, GO:0048571 - long-day photoperiodism	TO:0000229 - photoperiod sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000207 - plant height	PO:0009009 - plant embryo 
13512	_	OsLTP1.3, OsLtpI.3	_	non-specific lipid transfer protein 1.3, lipid transfer protein 1.3, type 1 non-specific lipid transfer protein 3			3	LOC_Os03g59380.	 Biochemical character	Os03g0808500	LOC_Os03g59380.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		PO:0009066 - anther 
13513	_	OsLTP1.4, OsLtpI.4	_	non-specific lipid transfer protein 1.4, lipid transfer protein 1.4, type 1 non-specific lipid transfer protein 4			5	LOC_Os05g40010.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0477900	LOC_Os05g40010.1				GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006869 - lipid transport, GO:0009409 - response to cold, GO:0008289 - lipid binding	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
13514	_	OsLTP1.5, OsLtpI.5	_	non-specific lipid transfer protein 1.5, lipid transfer protein 1.5, type 1 non-specific lipid transfer protein 5			6	LOC_Os06g06340.		Os06g0157900	LOC_Os06g06340.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		
13515	_	OsLTP1.6, OsLtpI.6	_	non-specific lipid transfer protein 1.6, lipid transfer protein 1.6, type 1 non-specific lipid transfer protein 6			6	LOC_Os06g34840.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0539500	LOC_Os06g34840.1				GO:0008289 - lipid binding, GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0006869 - lipid transport	TO:0000303 - cold tolerance	
13516	_	OsLTP1.7, OsLtpI.7	_	non-specific lipid transfer protein 1.7, lipid transfer protein 1.7, type 1 non-specific lipid transfer protein 7			8	LOC_Os08g03690.	 Biochemical character	Os08g0131200	LOC_Os08g03690.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport		PO:0009009 - plant embryo 
13517	_	OsLTP1.8, OsLtpI.8	_	non-specific lipid transfer protein 1.8, lipid transfer protein 1.8, type 1 non-specific lipid transfer protein 8, Phospholipid transfer protein 9C2			11	D16036. LOC_Os11g02330.	 Biochemical character	Os11g0114900	LOC_Os11g02330.1, LOC_Os11g02330.2				GO:0008289 - lipid binding, GO:0006869 - lipid transport		PO:0009009 - plant embryo 
13518	_	OsLTP1.9, OsLtpI.9	_	non-specific lipid transfer protein 1.9, lipid transfer protein 1.9, type 1 non-specific lipid transfer protein 9			11	Q2QYL3. LOC_Os11g02350.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0115100	LOC_Os11g02350.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport, GO:0009611 - response to wounding, GO:0006952 - defense response, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0000022 - plant cuticle , PO:0009010 - seed , PO:0009073 - stigma , PO:0009072 - plant ovary , PO:0004013 - epidermal cell 
13519	_	OsLTP1.10, OsLtpI.10	_	non-specific lipid transfer protein 1.10, lipid transfer protein 1.10, type 1 non-specific lipid transfer protein 10			11	LOC_Os11g02379.1.			LOC_Os11g02379						
13520	_	OsLTP1.11, OsLtpI.11	_	non-specific lipid transfer protein 1.11, lipid transfer protein 1.11, type 1 non-specific lipid transfer protein 11			11	LOC_Os11g02379.2.			LOC_Os11g02379						
13521	_	OsLTP1.12, OsLtpI.12	_	non-specific lipid transfer protein 1.12, lipid transfer protein 1.12, type 1 non-specific lipid transfer protein 12			11	D15364. LOC_Os11g02400.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0116000	LOC_Os11g02400.1, LOC_Os11g02400.2				GO:0009611 - response to wounding, GO:0006869 - lipid transport, GO:0008289 - lipid binding		PO:0000025 - root tip , PO:0000022 - plant cuticle 
13522	_	OsLTP1.13, OsLtpI.13	_	non-specific lipid transfer protein 1.13, lipid transfer protein 1.13, type 1 non-specific lipid transfer protein 13			11	LOC_Os11g02424.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0116200	LOC_Os11g02424.1, LOC_Os11g02424.2				GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009066 - anther 
13523	_	OsLTP1.14, OsLtpI.14	_	non-specific lipid transfer protein 1.14, lipid transfer protein 1.14, type 1 non-specific lipid transfer protein 14, Non-specific lipid-transfer protein 1			11	LOC_Os11g24070. Non-specific lipid-transfer protein 1 in Sudo et al. 2008.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0427800	LOC_Os11g24070.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006869 - lipid transport, GO:0008233 - peptidase activity, GO:0008289 - lipid binding, GO:0006508 - proteolysis, GO:0046688 - response to copper ion	TO:0000303 - cold tolerance, TO:0000021 - copper sensitivity, TO:0006001 - salt tolerance	
13524	LTP1.15	OsLTP1.15, OsLtp1.15, OsLTPL23, LTPL23	LIPID TRANSFER PROTEIN 1.15	non-specific lipid transfer protein 1.15, lipid transfer protein 1.15, type 1 non-specific lipid transfer protein 15, Lipid transfer protein-like 23	LIPID TRANSFER PROTEIN 1.15	osltpl23, osltpl23-1, osltpl23-2, osltpl23-3, osltpl23-4	12	O65091. AF051369. D22795. Phospholipid transfer protein. GO:0090351: seedling development. TO:0000949: seedling growth and development trait. GO:2000882: negative regulation of starch catabolic process.	 Character as QTL - Plant growth activity,  Biochemical character,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os12g0114500	LOC_Os12g02290.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0008289 - lipid binding, GO:0006869 - lipid transport, GO:0009845 - seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0005983 - starch catabolic process, GO:0009687 - abscisic acid metabolic process, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0006109 - regulation of carbohydrate metabolic process, GO:0015066 - alpha-amylase inhibitor activity	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content, TO:0000345 - seed viability, TO:0000280 - seedling vigor, TO:0000430 - germination rate, TO:0000340 - total soluble sugar content, TO:0000696 - starch content	PO:0009009 - plant embryo , PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage 
13525	_	OsLTP1.16, OsLtpI.16	_	non-specific lipid transfer protein 1.16, lipid transfer protein 1.16, type 1 non-specific lipid transfer protein 16			12	Q2QYL3. LOC_Os12g02300.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0114800	LOC_Os12g02300.1				GO:0008289 - lipid binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006869 - lipid transport, GO:0006952 - defense response, GO:0009611 - response to wounding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0009009 - plant embryo , PO:0000022 - plant cuticle , PO:0009073 - stigma , PO:0009072 - plant ovary , PO:0004013 - epidermal cell 
13526	_	OsLTP1.17, b1, LTP2, OsLtpI.17	_	non-specific lipid transfer protein 1.17, lipid transfer protein 1.17, type 1 non-specific lipid transfer protein 17, lipid transfer protein b1, nonspecific lipid-transfer protein 2			12	Q2QYL2. X83434. AU174855, AU174854. a class I LTP. nonspecific lipid-transfer protein 2 (LTP 2) in Yamaguchi et al. 2004.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0115000	LOC_Os12g02310.1, LOC_Os12g02310.2				GO:0008289 - lipid binding, GO:0006869 - lipid transport, GO:0009611 - response to wounding	TO:0000432 - temperature response trait	PO:0000022 - plant cuticle 
13527	_	OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18, LTPC2, OsLTPC2	_	non-specific lipid transfer protein 1.18, lipid transfer protein 1.18, type 1 non-specific lipid transfer protein 18, nonspecific lipid transfer protein-1, lipid transfer protein a15, lipid transfer protein Class II			12	Q0IQK9, A2ZHF1. Y08691, AF017360. PDB codes: 1rzl, 1uva, 1uvb, 1uvc. X83435. a class II LTP (Vignols et al. 1997). D15678. Phospholipid transfer protein homolog.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0115100	LOC_Os12g02320.1				GO:0009611 - response to wounding, GO:0006869 - lipid transport, GO:0008289 - lipid binding		PO:0000022 - plant cuticle 
13528	_	OsLTP1.19, OsLtpI.19	_	non-specific lipid transfer protein 1.19, lipid transfer protein 1.19, type 1 non-specific lipid transfer protein 19			12	LOC_Os12g02330.1.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0115300	LOC_Os12g02330.2				GO:0009409 - response to cold, GO:0006869 - lipid transport, GO:0008289 - lipid binding	TO:0000303 - cold tolerance	
13529	_	OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14	_	non-specific lipid transfer protein 1.20, lipid transfer protein 1.20, type 1 non-specific lipid transfer protein 20			12	LOC_Os12g02340. OsLTPL14 in Wang et al. 2018.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0115500	LOC_Os12g02340.1, LOC_Os12g02340.2				GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0009409 - response to cold, GO:0009611 - response to wounding	TO:0000303 - cold tolerance	PO:0000025 - root tip , PO:0000022 - plant cuticle 
13530	_	OsLTP2.1, OsLtpII.1	_	non-specific lipid transfer protein 2.1, lipid transfer protein 2.1, type 2 non-specific lipid transfer protein 1			1	LOC_Os01g49640.		Os01g0691100	LOC_Os01g49640.1						
13531	_	OsLTP2.2, OsLtpII.2	_	non-specific lipid transfer protein 2.2, lipid transfer protein 2.2, type 2 non-specific lipid transfer protein 2			1	LOC_Os01g49650.		Os01g0691300	LOC_Os01g49650.1						
13532	_	OsLTP2.4, OsLtpII.4	_	non-specific lipid transfer protein 2.4, lipid transfer protein 2.4, type 2 non-specific lipid transfer protein 4			5	LOC_Os05g47700.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0550300	LOC_Os05g47700.1				GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
13533	_	OsLTP2.5, OsLtpII.5	_	non-specific lipid transfer protein 2.5, lipid transfer protein 2.5, type 2 non-specific lipid transfer protein 5			5	LOC_Os05g47730.		Os05g0550600	LOC_Os05g47730.1						
13534	_	OsLTP2.6, OsLtpII.6	_	non-specific lipid transfer protein 2.6, lipid transfer protein 2.6, type 2 non-specific lipid transfer protein 6			6	LOC_Os06g49190.		Os06g0705400	LOC_Os06g49190.1						
13535	_	OsLTP2.7, OsLtpII.7	_	non-specific lipid transfer protein 2.7, lipid transfer protein 2.7, type 2 non-specific lipid transfer protein 7			10	LOC_Os10g36070.	 Biochemical character	Os10g0504650	LOC_Os10g36070.1				GO:0008233 - peptidase activity, GO:0006508 - proteolysis		
13536	_	OsLTP2.8, OsLtpII.8	_	non-specific lipid transfer protein 2.8, lipid transfer protein 2.8, type 2 non-specific lipid transfer protein 8			10	LOC_Os10g36090.		Os10g0504700	LOC_Os10g36090.1						
13537	LTP2.9	OsLTP2.9, OsLtpII.9, LtpII.9	NON-SPECIFIC LIPID TRANSFER PROTEIN 2.9	non-specific lipid transfer protein 2.9, lipid transfer protein 2.9, type 2 non-specific lipid transfer protein 9	NON-SPECIFIC LIPID TRANSFER PROTEIN 2.9		10			Os10g0504900	LOC_Os10g36100.1				GO:0006869 - lipid transport		
13538	_	OsLTP2.10, OsLtpII.10	_	non-specific lipid transfer protein 2.10, lipid transfer protein 2.10, type 2 non-specific lipid transfer protein 10			10	LOC_Os10g36110.	 Biochemical character	Os10g0505000	LOC_Os10g36110.1				GO:0008233 - peptidase activity, GO:0006508 - proteolysis		
13539	_	OsLTP2.11, OsLtpII.11, LTP2.11, LtpII.11, OsLTPL159, LTPL159	_	non-specific lipid transfer protein 2.11, lipid transfer protein 2.11, type 2 non-specific lipid transfer protein 11		OsLTPL159IL112, OsLTPL159GC2	10	OsLTPL159 in Zhao et al. 2020. GSE131083 (NCBI's Gene Expression Omnibus accession number): RNA-seq data derived from the OsLTPL159 overexpression plants. TO:0000993: cellulose content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0505500	LOC_Os10g36160.1				GO:0030243 - cellulose metabolic process, GO:0006508 - proteolysis, GO:0008233 - peptidase activity, GO:0000302 - response to reactive oxygen species, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
13540	_	OsLTP2.12, OsLtpII.12	_	non-specific lipid transfer protein 2.12, lipid transfer protein 2.12, type 2 non-specific lipid transfer protein 12			10	LOC_Os10g36170.	 Biochemical character	Os10g0505700	LOC_Os10g36170.1				GO:0008233 - peptidase activity, GO:0006508 - proteolysis		
13541	_	OsLTP2.13, OsLtpII.13	_	non-specific lipid transfer protein 2.13, lipid transfer protein 2.13, type 2 non-specific lipid transfer protein 13			11	LOC_Os11g40530.		Os11g0620300	LOC_Os11g40530.1						
13542	_	OsLTPd1, OsLtpIV.1	_	non-specific lipid transfer protein d1, lipid transfer protein d1, type D non-specific lipid transfer protein 1			1	LOC_Os01g68580.		Os01g0914100	LOC_Os01g68580.1						
13543	_	OsLTPd2, OsLtpIV.2	_	non-specific lipid transfer protein d2, lipid transfer protein d2, type D non-specific lipid transfer protein 2			1	LOC_Os01g68589.		Os01g0914300	LOC_Os01g68589.1						
13544	_	OsLTPd3, OsLtpIV.3	_	non-specific lipid transfer protein d3, lipid transfer protein d3, type D non-specific lipid transfer protein 3			7	LOC_Os07g18750.		Os07g0287400	LOC_Os07g18750.1						
13545	_	OsLTPd4, OsLtpIV.4	_	non-specific lipid transfer protein d4, lipid transfer protein d4, type D non-specific lipid transfer protein 4			7	LOC_Os07g18990.		Os07g0290200	LOC_Os07g18990.1						
13546	_	OsLTPd5, LTPd5	_	non-specific lipid transfer protein d5, lipid transfer protein d5, type D non-specific lipid transfer protein 5			1	LOC_Os01g62980.	 Biochemical character	Os01g0849000	LOC_Os01g62980.1, LOC_Os01g62980.2						PO:0009066 - anther , PO:0009006 - shoot system , PO:0000034 - vascular system , PO:0009013 - portion of meristem tissue 
13547	_	OsLTPd6, OsLtpV.2	_	non-specific lipid transfer protein d6, lipid transfer protein d6, type D non-specific lipid transfer protein 6			4	LOC_Os04g33920.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0415800	LOC_Os04g33920.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009009 - plant embryo 
13548	_	OsLTPd7, OsLtpV.3	_	non-specific lipid transfer protein d7, lipid transfer protein d7, type D non-specific lipid transfer protein 7			4	LOC_Os04g33930.		Os04g0415900	LOC_Os04g33930.1, LOC_Os04g33930.2						
13549	_	OsLTPd8, OsLtpV.4, PI	_	non-specific lipid transfer protein d8, lipid transfer protein d8, type D non-specific lipid transfer protein 8, Protease inhibitor			5	LOC_Os05g06780.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0160300	LOC_Os05g06780.1				GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009013 - portion of meristem tissue , PO:0009006 - shoot system , PO:0009066 - anther , PO:0000034 - vascular system 
13550	_	OsLTPd9, OsLtpVI.1	_	non-specific lipid transfer protein d9, lipid transfer protein d9, type D non-specific lipid transfer protein 9			1	LOC_Os01g58650.		Os01g0800600	LOC_Os01g58650.1						
13551	_	OsLTPd10, OsLtpVI.2	_	non-specific lipid transfer protein d10, lipid transfer protein d10, type D non-specific lipid transfer protein 10			1	LOC_Os01g58660.1.			LOC_Os01g58660						
13552	_	OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL	_	non-specific lipid transfer protein d11, lipid transfer protein d11, type D non-specific lipid transfer protein 11, Drought-Induced LTP, Drought-Induced lipid transfer protein			10	an anther-specific lipid transfer protein. CT833313.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0148000	LOC_Os10g05720.1, LOC_Os10g05720.2				GO:0008233 - peptidase activity, GO:0009628 - response to abiotic stimulus, GO:0006508 - proteolysis, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009609 - response to symbiotic bacterium	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000153 - relative yield	
13553	_	OsLTPd12, OsLtpVI.4	_	non-specific lipid transfer protein d12, lipid transfer protein d12, type D non-specific lipid transfer protein 12			11	LOC_Os11g29420.	 Biochemical character	Os11g0484700	LOC_Os11g29420.1				GO:0006508 - proteolysis, GO:0008233 - peptidase activity		
13554	_	OsLTPx1, OsLtpY.1	_	type X non-specific lipid transfer protein 1, non-specific lipid transfer protein x1, lipid transfer protein x1			3	LOC_Os03g44000.		Os03g0641500	LOC_Os03g44000.1						
13555	_	OsLTPx2, OsLtpY.2	_	type X non-specific lipid transfer protein 2, non-specific lipid transfer protein x2, lipid transfer protein x2			7	LOC_Os07g27940.1.			LOC_Os07g27940						
13556	_	OsLTPx3, OsLtpY.3	_	type X non-specific lipid transfer protein 3, non-specific lipid transfer protein x3, lipid transfer protein x3			11	LOC_Os11g34660.	 Biochemical character		LOC_Os11g34660				GO:0008233 - peptidase activity, GO:0006508 - proteolysis		
13557	LTP1	Ltp1, RLTP1	LIPID TRANSFER PROTEIN 1	non-specific lipid-transfer protein 1, type-1 lipid transfer protein, lipid transfer protein, Non-specific lipid-transfer protein 2	LIPID TRANSFER PROTEIN 1		11	Z23271. AF017359. AF01736. A2ZAT0. Q7XJ39.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0115350	LOC_Os11g02369.1				GO:0016020 - membrane, GO:0009611 - response to wounding, GO:0006869 - lipid transport, GO:0046688 - response to copper ion, GO:0008289 - lipid binding	TO:0000021 - copper sensitivity	PO:0000022 - plant cuticle , PO:0009073 - stigma , PO:0009013 - portion of meristem tissue , PO:0000146 - abscission zone 
13558	MS2	OsMS2, OsDPW, DPW, DPW1, OsDPW1, OsFAR2, FAR2	MALE STERILITY 2	male sterility protein 2, defective pollen wall, Fatty Acyl-CoA Reductase 2	FATTY ACYL-COA REDUCTASE 2	dpw, osfar2	3	C99490. a homologous gene of Arabidopsis MS2. a member of fatty acid metabolic gene cluster on chromosome 3 (FGC3). fatty acid reductase. Fatty Acyl Carrier Protein Reductase. dpw rice mutants exhibit anther cuticle defects. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0167600	LOC_Os03g07140.1				GO:0010584 - pollen exine formation, GO:0009507 - chloroplast, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0010208 - pollen wall assembly, GO:0009651 - response to salt stress, GO:0048653 - anther development, GO:0048658 - tapetal layer development, GO:0009555 - pollen development, GO:0009536 - plastid, GO:0010143 - cutin biosynthetic process, GO:0048437 - floral organ development, GO:0009409 - response to cold, GO:0080110 - sporopollenin biosynthetic process, GO:0009414 - response to water deprivation, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0042542 - response to hydrogen peroxide, GO:0010229 - inflorescence development	TO:0000531 - anther length, TO:0000187 - anther color, TO:0000449 - grain yield per plant, TO:0000218 - pollen abortion type, TO:0000432 - temperature response trait, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0006022 - floral organ development trait, TO:0000214 - anther shape, TO:0000437 - male sterility, TO:0000396 - grain yield, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	PO:0001007 - pollen development stage , PO:0025385 - cutin , PO:0001004 - anther development stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
13559	LTR1	OsCER1, CER1, OsGL1-4, GL1-4, Os CER1, OsLTR1	LEAF TIP RUMPLED 1	ECERIFERUM 1, Glossy1-homologous gene 4		ltr1	2	Arabidopsis CER1 homolog. a WDA1 paralog. the closest orthologue of Arabidopsis CER1 and rice WDA1 (wax deficient anther1). PO:0030123: panicle inflorescence. GO:0071771:aldehyde decarbonylase activity. TO:0020109: vascular bundle development trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility	Os02g0621300	LOC_Os02g40784.3, LOC_Os02g40784.1				GO:0009651 - response to salt stress, GO:0043447 - alkane biosynthetic process, GO:0010229 - inflorescence development, GO:0048653 - anther development, GO:0009657 - plastid organization, GO:0009555 - pollen development, GO:0005506 - iron ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0042542 - response to hydrogen peroxide, GO:0010025 - wax biosynthetic process, GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity, GO:0042335 - cuticle development, GO:0046185 - aldehyde catabolic process, GO:0030104 - water homeostasis, GO:0050801 - ion homeostasis, GO:0006833 - water transport, GO:0048366 - leaf development	TO:0000437 - male sterility, TO:0000496 - carotenoid content, TO:0000276 - drought tolerance, TO:0000419 - leaf anatomy and morphology trait, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000655 - leaf development trait, TO:0000131 - leaf water potential, TO:0000040 - panicle length, TO:0002657 - oxidative stress, TO:0000557 - secondary branch number, TO:0000709 - leaf gloss, TO:0000420 - fertility related trait, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000371 - yield trait, TO:0000455 - seed set percent, TO:0000449 - grain yield per plant	PO:0001083 - inflorescence development stage , PO:0009051 - spikelet , PO:0001050 - leaf development stage , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009071 - anther wall tapetum , PO:0009066 - anther , PO:0020048 - microspore 
13560	_	OsACS	_	Acyl-CoA synthetase			3		 Biochemical character	Os03g0133500	LOC_Os03g04120.1				GO:0016874 - ligase activity		
13561	FAE1	OsCHS, FAE, OsFAE1, OsKCS14, KCS14	FATTY ACID ELONGATION 1	Chalcone Synthase, FATTY ACID ELONGATION1, fatty acid elongase 1, 3-Ketoacyl-CoA synthase 14	FATTY ACID ELONGASE 1		5	one of the beta-ketoacyl CoA synthase (KCS) genes. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0574600	LOC_Os05g49900.1				GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process	TO:0006001 - salt tolerance	PO:0009049 - inflorescence 
13562	_		_	CRL4-like			2			Os02g0326600	LOC_Os02g22090.1				GO:0001736 - establishment of planar polarity, GO:0080119 - ER body organization, GO:0010540 - basipetal auxin transport, GO:0007155 - cell adhesion, GO:0000911 - cytokinesis by cell plate formation, GO:0009942 - longitudinal axis specification, GO:0010087 - phloem or xylem histogenesis, GO:0032012 - regulation of ARF protein signal transduction, GO:0048765 - root hair cell differentiation, GO:0009826 - unidimensional cell growth, GO:0016192 - vesicle-mediated transport, GO:0005802 - trans-Golgi network, GO:0005086 - ARF guanyl-nucleotide exchange factor activity, GO:0010292 - GTP:GDP antiporter activity		
13563	GRX8	OsGRX8, OsROXY1, OsROXY2	GLUTAREDOXIN 8	glutaredoxin 8	GLUTAREDOXIN 8		2	an ortholog of Arabidopsis ROXY1. Q6K609. OsROXY2 in Wang et al. 2009.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0512400	LOC_Os02g30850.1				GO:0048653 - anther development, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0048448 - stamen morphogenesis, GO:0005634 - nucleus, GO:0048451 - petal formation		
13564	GRX2	OsGRX2	GLUTAREDOXIN 2	glutaredoxin 2	GLUTAREDOXIN 2		1	Q5SMY5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0194600	LOC_Os01g09830.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009408 - response to heat, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis	TO:0000259 - heat tolerance	
13565	PHS9	OsGRX3, GRX3	PRE-HARVEST SPROUTING 9	glutaredoxin 3, Pre-harvest sprouting 9	GLUTAREDOXIN 3	phs9-D, phs9-2, phs9-16	1	Q0JP62. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Seed - Morphological traits - Embryo,  Seed - Physiological traits - Dormancy,  Biochemical character	Os01g0241400	LOC_Os01g13950.1				GO:0009790 - embryonic development, GO:0005634 - nucleus, GO:0015035 - protein disulfide oxidoreductase activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0009845 - seed germination, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0048623 - seed germination on parent plant, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005737 - cytoplasm, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0042542 - response to hydrogen peroxide	TO:0000615 - abscisic acid sensitivity, TO:0000620 - embryo development trait	PO:0009009 - plant embryo , PO:0007631 - plant embryo stage 
13566	GRX4	OsGRX4, OsGrx_C7, Grx_C7	GLUTAREDOXIN 4	glutaredoxin 4	GLUTAREDOXIN 4		1	Q7G8Y5. OsGrx_C7 in Verma et al. 2016 and Chen et al. 2017. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0368900	LOC_Os01g27140.1				GO:0046685 - response to arsenic, GO:0009414 - response to water deprivation, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity	TO:0000011 - nitrogen sensitivity, TO:0000188 - drought sensitivity, TO:0000465 - mineral and ion content related trait	
13567	GRX6	OsGRX6, OsGrx_I1, Grx_I1	GLUTAREDOXIN 6	glutaredoxin 6	GLUTAREDOXIN 6		1	Q5QLR2. AU162644, AU056017. TO:0020093: nitrogen content. TO:0000905: seed yield. OsGrx_I1 in Yang et al. 2016. LOC_Os01g47760. a plant-specific CC-type glutaredoxin.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character	Os01g0667900	LOC_Os01g47760.1				GO:0048878 - chemical homeostasis, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009686 - gibberellin biosynthetic process, GO:0009691 - cytokinin biosynthetic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0046872 - metal ion binding, GO:0045487 - gibberellin catabolic process, GO:0045454 - cell redox homeostasis, GO:0015996 - chlorophyll catabolic process, GO:0015035 - protein disulfide oxidoreductase activity, GO:0010476 - gibberellin-mediated signaling, GO:0009826 - unidimensional cell growth, GO:0009736 - cytokinin mediated signaling	TO:0000590 - grain weight, TO:0000432 - temperature response trait, TO:0000445 - seed number, TO:0000396 - grain yield, TO:0000402 - grain width, TO:0002675 - gibberellic acid content, TO:0002660 - cytokinin content, TO:0000495 - chlorophyll content, TO:0000207 - plant height	
13568	GRX7	OsGRX7	GLUTAREDOXIN 7	glutaredoxin 7	GLUTAREDOXIN 7		1	Q0JG89.	 Biochemical character	Os01g0936000	LOC_Os01g70990.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13569	GRX13	OsGRX13, OsROXY1	GLUTAREDOXIN 13	glutaredoxin 13	GLUTAREDOXIN 13		4	Q0JDM4.	 Biochemical character	Os04g0393500	LOC_Os04g32300.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0048653 - anther development, GO:0048451 - petal formation, GO:0048448 - stamen morphogenesis, GO:0045454 - cell redox homeostasis		
13570	GRX15	OsGRX15	GLUTAREDOXIN 15	glutaredoxin 15	GLUTAREDOXIN 15		5	P0C290.	 Biochemical character	Os05g0149950	LOC_Os05g05730.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis		
13571	GRX16	OsGRX16	GLUTAREDOXIN 16	glutaredoxin 16	GLUTAREDOXIN 16		5	Q0DK35.	 Biochemical character	Os05g0198200	LOC_Os05g10930.1				GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain		
13572	GRX17	OsGRX17	GLUTAREDOXIN 17	glutaredoxin 17	GLUTAREDOXIN 17		5	P0C291.	 Biochemical character	Os05g0563900	LOC_Os05g48930.1				GO:0046872 - metal ion binding, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0051537 - 2 iron, 2 sulfur cluster binding		
13573	GRX19	OsGRX19	GLUTAREDOXIN 19	glutaredoxin 19	GLUTAREDOXIN 19		7	Q7XIZ1.	 Biochemical character	Os07g0151100	LOC_Os07g05630.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain		
13574	GRX23	OsGRX23	GLUTAREDOXIN 23	glutaredoxin 23	GLUTAREDOXIN 23		11	Q2R076.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0655900	LOC_Os11g43520.1				GO:0009408 - response to heat, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain, GO:0005634 - nucleus, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity	TO:0000259 - heat tolerance	
13575	GRX24	OsGRX24	GLUTAREDOXIN 24	glutaredoxin 24	GLUTAREDOXIN 24		11	Q2R075.	 Biochemical character	Os11g0656000	LOC_Os11g43530.1				GO:0005634 - nucleus, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		
13576	GRX25	OsGRX25	GLUTAREDOXIN 25	glutaredoxin 25	GLUTAREDOXIN 25		11	Q2R073.	 Biochemical character	Os11g0656400	LOC_Os11g43550.1				GO:0009055 - electron carrier activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis		
13577	GRX26	OsGRX26	GLUTAREDOXIN 26	glutaredoxin 26	GLUTAREDOXIN 26		11	Q0IRB0.	 Biochemical character	Os11g0656700	LOC_Os11g43580.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0005634 - nucleus, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0022900 - electron transport chain		
13578	GRX28	OsGRX28	GLUTAREDOXIN 28	glutaredoxin 28, glutaredoxin-C14	GLUTAREDOXIN 28		12	Q0IMV4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0538600	LOC_Os12g35330.1				GO:0009055 - electron carrier activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0045454 - cell redox homeostasis, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
13579	GRX29	OsGRX29	GLUTAREDOXIN 29	glutaredoxin 29	GLUTAREDOXIN 29		12	Q2QP86.	 Biochemical character	Os12g0538700	LOC_Os12g35340.1				GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0015035 - protein disulfide oxidoreductase activity, GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity		
13580	GRX1	OsGRX1	GLUTAREDOXIN 1	glutaredoxin 1	GLUTAREDOXIN 1		1	Q0JQ97.	 Biochemical character	Os01g0174900	LOC_Os01g07950.1				GO:0009055 - electron carrier activity, GO:0005739 - mitochondrion, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
13581	GRX5	OsGRX5	GLUTAREDOXIN 5	glutaredoxin 5	GLUTAREDOXIN 5		1	Q0JM76.	 Biochemical character	Os01g0530400	LOC_Os01g34620.1, LOC_Os01g34620.2, LOC_Os01g34620.3, LOC_Os01g34620.4, LOC_Os01g34620.5, LOC_Os01g34620.6, LOC_Os01g34620.7, LOC_Os01g34620.8, LOC_Os01g34620.9				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0045454 - cell redox homeostasis, GO:0046872 - metal ion binding, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0005739 - mitochondrion		
13582	GRX11	OsGRX11	GLUTAREDOXIN 11	glutaredoxin 11	GLUTAREDOXIN 11		3	Q851Y7.	 Biochemical character	Os03g0851200	LOC_Os03g63420.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009507 - chloroplast, GO:0015297 - antiporter activity, GO:0006812 - cation transport, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015038 - glutathione disulfide oxidoreductase activity		
13583	GRX22	OsGRX22, OsGRXS17, GRXS17	GLUTAREDOXIN 22	glutaredoxin 22, Glutaredoxin S17	GLUTAREDOXIN 22		10	LOC_Os10g35720. Q0IWL9. a Functional Homolog of AtGRXS17.  GO:0080148: negative regulation of response to water deprivation. GO:2000377: regulation of reactive oxygen species metabolic process. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0500700	LOC_Os10g35720.1, LOC_Os10g35720.2				GO:0005737 - cytoplasm, GO:0009055 - electron carrier activity, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009414 - response to water deprivation, GO:0005635 - nuclear envelope	TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000136 - relative water content, TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
13584	GRX27	OsGRX27	GLUTAREDOXIN 27	glutaredoxin 27	GLUTAREDOXIN 27		12	Q2QX01.	 Biochemical character	Os12g0175500	LOC_Os12g07650.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0006812 - cation transport, GO:0009570 - chloroplast stroma, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis		
13585	GRX9	OsGRX9, OsGrx_C2.1, Grx_C2.1	GLUTAREDOXIN 9	glutaredoxin 9	GLUTAREDOXIN 9		2	Q6K953. OsGrx_C2.1 in Verma et al. 2016 and Chen et al. 2017. TO:0006054: arsenic concentration. LOC_Os02g40500.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0618100	LOC_Os02g40500.1				GO:0045454 - cell redox homeostasis, GO:0009507 - chloroplast, GO:0015035 - protein disulfide oxidoreductase activity, GO:0022900 - electron transport chain, GO:0009055 - electron carrier activity, GO:0046685 - response to arsenic	TO:0000465 - mineral and ion content related trait	
13586	GRX10	OsGRX10	GLUTAREDOXIN 10	glutaredoxin 10	GLUTAREDOXIN 10		2	LOC_Os02g43180. Q6H628.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0646400	LOC_Os02g43180.1, LOC_Os02g43180.2, LOC_Os02g43180.3				GO:0009409 - response to cold, GO:0015035 - protein disulfide oxidoreductase activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0005737 - cytoplasm, GO:0051537 - 2 iron, 2 sulfur cluster binding	TO:0000303 - cold tolerance	
13587	GRX12	OsGRX12	GLUTAREDOXIN 12	glutaredoxin 12	GLUTAREDOXIN 12		4		 Biochemical character	Os04g0244400	LOC_Os04g17050.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0005739 - mitochondrion		
13588	GRX18	OsGRX18	GLUTAREDOXIN 18	glutaredoxin 18	GLUTAREDOXIN 18		6	Q0DAE4.	 Biochemical character	Os06g0659500	LOC_Os06g44910.1, LOC_Os06g44910.2				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0022900 - electron transport chain, GO:0005737 - cytoplasm		
13589	GRX20	OsGRX20	GLUTAREDOXIN 20	glutaredoxin 20	GLUTAREDOXIN 20		8	GO:1901562: response to paraquat.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0558200	LOC_Os08g44400.3, LOC_Os08g44400.1, LOC_Os08g44400.2				GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009751 - response to salicylic acid stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0009651 - response to salt stress, GO:0004364 - glutathione transferase activity, GO:0009635 - response to herbicide, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0006749 - glutathione metabolic process	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000058 - herbicide sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf 
13590	GRX21	OsGRX21	GLUTAREDOXIN 21	glutaredoxin 21	GLUTAREDOXIN 21		8	Q0J3L4.	 Biochemical character	Os08g0565800	LOC_Os08g45140.1				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009507 - chloroplast, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding		
13591	_	OsGRL1	_	GRX-like protein 1, glutaredoxin-like protein 1			1		 Biochemical character	Os01g0235900	LOC_Os01g13480.1				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13592	_	OsGRL2	_	GRX-like protein 2, glutaredoxin-like protein 2			1		 Biochemical character	Os01g0829400	LOC_Os01g61350.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity		
13593	_	OsGRL3	_	GRX-like protein 3, glutaredoxin-like protein 3			2		 Biochemical character	Os02g0102000	LOC_Os02g01200.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13594	_	OsGRL4	_	GRX-like protein 4, glutaredoxin-like protein 4			2		 Biochemical character	Os02g0748800	LOC_Os02g51370.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity		
13595	_	OsGRL5	_	GRX-like protein 5, glutaredoxin-like protein 5			3		 Biochemical character	Os03g0170800	LOC_Os03g07470.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity		
13596	_	OsGRL6	_	GRX-like protein 6, glutaredoxin-like protein 6			3		 Biochemical character	Os03g0356400	LOC_Os03g24030.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis		
13597	_	OsGRL7	_	GRX-like protein 7, glutaredoxin-like protein 7			3		 Biochemical character	Os03g0648800	LOC_Os03g44650.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity		
13598	GRL8	OsGRL8	GLUTAREDOXIN-LIKE PROTEIN 8	GRX-like protein 8, glutaredoxin-like protein 8	GLUTAREDOXIN-LIKE PROTEIN 8		4		 Biochemical character	Os04g0412800	LOC_Os04g33680.1				GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
13599	_	OsGRL9, GRL9	_	GRX-like protein 9, glutaredoxin-like protein 9			4		 Biochemical character	Os04g0641300	LOC_Os04g54860.1				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13600	_	OsGRL10, GRL10, OsSTA146, STA146	_	GRX-like protein 10, glutaredoxin-like protein 10			5	a mature anther-preferentially expressed gene. LOC_Os05g28530	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0353600	LOC_Os05g28530.1				GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		PO:0009066 - anther 
13601	_	OsGRL11	_	GRX-like protein 11, glutaredoxin-like protein 11			5		 Biochemical character	Os05g0471350	LOC_Os05g39450.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
13602	_	OsGRL12	_	GRX-like protein 12, glutaredoxin-like protein 12			6	GO:0035556:intracellular signal transduction.	 Biochemical character	Os06g0224200	LOC_Os06g12030.1, LOC_Os06g12030.2, LOC_Os06g12030.3				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13603	_	OsGRL13	_	GRX-like protein 13, glutaredoxin-like protein 13			6		 Biochemical character	Os06g0226100	LOC_Os06g12190.1				GO:0009055 - electron carrier activity, GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
13604	_	OsGRL14	_	GRX-like protein 14, glutaredoxin-like protein 14			7		 Biochemical character	Os07g0159900	LOC_Os07g06600.1				GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		
13606	_	OsGRL16	_	GRX-like protein 16, glutaredoxin-like protein 16			7		 Biochemical character	Os07g0659900	LOC_Os07g46570.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity		
13607	_	OsGRL17	_	GRX-like protein 17, glutaredoxin-like protein 17			8		 Biochemical character	Os08g0171333	LOC_Os08g07450.1				GO:0045454 - cell redox homeostasis, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity		
13608	_	OsGRL18	_	GRX-like protein 18, glutaredoxin-like protein 18			8		 Biochemical character	Os08g0554699	LOC_Os08g44070.1				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity		
13609	_	OsGRL19	_	GRX-like protein 19, glutaredoxin-like protein 19			10	GO:0035556:intracellular signal transduction.	 Biochemical character	Os10g0482900	LOC_Os10g34170.1				GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0045454 - cell redox homeostasis		
13610	VHA-B	OsVHA-B, VHA-B1, OsVHA-B1	VACUOLAR H-ATPASE B SUBUNIT	Vacuolar H-ATPase B subunit, vacuolar-ATPase subunit B, vacuolar H+-ATPase B subunit, V-ATPase B, Vacuolar ATPase B subunit	VACUOLAR H-ATPASE B SUBUNIT		6	AB055106.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0568200	LOC_Os06g37180.1				GO:0010255 - glucose mediated signaling, GO:0005773 - vacuole, GO:0046034 - ATP metabolic process, GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0033180 - proton-transporting V-type ATPase, V1 domain, GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0009941 - chloroplast envelope		
13611	COR413-TM1	OsCOR413-TM1, Oscor413-tm1	COLD ACCLIMATION PROTEIN 413-TM1	Cold acclimation protein 413-TM1, COR413-thylakoid membrane group multispanning transmembrane protein 1, cold-regulated 413-thylakoid membrane group multispanning transmembrane protein 1	COLD ACCLIMATION PROTEIN 413-TM1		5	AY181210.	 Tolerance and resistance - Stress tolerance	Os05g0566800	LOC_Os05g49170.1				GO:0009737 - response to abscisic acid stimulus, GO:0009631 - cold acclimation, GO:0009535 - chloroplast thylakoid membrane, GO:0070417 - cellular response to cold, GO:0031357 - integral to chloroplast inner membrane, GO:0042631 - cellular response to water deprivation, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
13612	PP2C9	OsPP15, PP15, OsPP2C09, PP2C09, OsPP2C9, OsPP2C3	PROTEIN PHOSPHATASE 2C 9	protein phosphatase 15, protein phosphatase 2C09, protein phosphatase 2C9, protein phosphatase 2C 9	PROTEIN PHOSPHATASE 2C 9	ospp2c09-1, ospp2c09-2	1	Q5N9N2. OsPP2C09 in Xue et al. 2008, KIm et al. 2012 and Chen et al. 2014, Kong et al. 2019, Bhatnagar et al. 2020, Min et al. 2021. OsPP15 in Liu et al. 2013, Guo et al. 2018. OsPP2C3 in Cui et al. 2023. a PP2C homolog of ABI1, a key member in the abscisic acid (ABA) signaling pathway. GO:0080148: negative regulation of response to water deprivation. GO:2000280: regulation of root development. 	 Character as QTL - Germination,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Seed - Physiological traits - Dormancy,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os01g0846300	LOC_Os01g62760.1				GO:0046872 - metal ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0010030 - positive regulation of seed germination, GO:0030307 - positive regulation of cell growth, GO:0048831 - regulation of shoot development, GO:0050891 - multicellular organismal water homeostasis, GO:0016021 - integral to membrane, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0009409 - response to cold, GO:0010119 - regulation of stomatal movement, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009738 - abscisic acid mediated signaling, GO:0048364 - root development, GO:0009725 - response to hormone stimulus, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0010374 - stomatal complex development, GO:0080134 - regulation of response to stress	TO:0000278 - root to shoot ratio, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000357 - growth and development trait, TO:0000566 - stomatal frequency, TO:0000207 - plant height, TO:0006036 - stem elongation, TO:0000656 - root development trait, TO:0000447 - filled grain number, TO:0000449 - grain yield per plant, TO:0000430 - germination rate, TO:0000590 - grain weight, TO:0000227 - root length, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0007057 - 0 seed germination stage , PO:0009006 - shoot system , PO:0007089 - stem elongation stage , PO:0007520 - root development stage 
13614	EBS	OsEBS	ENHANCING BIOMASS AND SPIKELET NUMBER	enhancing biomass and spikelet number			5	JX162210(Oryza rufipogon), JX162211(Oryza sativa indica).  Hsp70 family H2 subgroup. OsEBS is a good candidate for the QTL qGP5-1. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Reproductive organ - Inflorescence	Os05g0591400	LOC_Os05g51360.1				GO:0008283 - cell proliferation, GO:0005524 - ATP binding	TO:0000457 - total biomass yield, TO:0002637 - leaf size, TO:0000207 - plant height, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000456 - spikelet number, TO:0000449 - grain yield per plant	PO:0025034 - leaf 
13615	_	OsRacGEF1, RacGEF1, OsGEF1	_	Rac GDP/GTP exchange factor 1				OsGEF1 in Zhang et al. 2021. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.	 Tolerance and resistance - Disease resistance	Os09g0544800	LOC_Os09g37270.1, LOC_Os09g37270.2				GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0016324 - apical plasma membrane, GO:0009860 - pollen tube growth, GO:0080092 - regulation of pollen tube growth, GO:0050832 - defense response to fungus, GO:0002238 - response to molecule of fungal origin	TO:0000439 - fungal disease resistance	
13616	CRC1	OsCRC1	CENTRAL REGION COMPONENT1	CENTRAL REGION COMPONENT 1		crc1	4	KF245924. Q7XK25. CRC1 is orthologous to Saccharomyces cerevisiae pachytene checkpoint2 (Pch2) and Mus musculus THYROID RECEPTOR-INTERACTING PROTEIN13 (TRIP13) and may be a conserved SC component.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os04g0479000	LOC_Os04g40290.1				GO:0007126 - meiosis, GO:0005524 - ATP binding, GO:0017111 - nucleoside-triphosphatase activity, GO:0000706 - meiotic DNA double-strand break processing		
13617	VQ1	OsVQ1	VQ MOTIF-CONTAINING PROTEIN 1	VQ motif-containing protein 1, valine-glutamine protein 1	VQ MOTIF-CONTAINING PROTEIN 1		1		 Tolerance and resistance - Stress tolerance	Os01g0278000	LOC_Os01g17050.1				GO:0005516 - calmodulin binding, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
13618	VQ2	OsVQ2	VQ MOTIF-CONTAINING PROTEIN 2	VQ motif-containing protein 2, valine-glutamine protein 2	VQ MOTIF-CONTAINING PROTEIN 2		1		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0653300	LOC_Os01g46440.1						
13619	VQ3	OsVQ3	VQ MOTIF-CONTAINING PROTEIN 3	VQ motif-containing protein 3, valine-glutamine protein 3	VQ MOTIF-CONTAINING PROTEIN 3		1		 Tolerance and resistance - Disease resistance	Os01g0747800	LOC_Os01g54400.1						
13620	VQ4	OsVQ4	VQ-MOTIF PROTEIN 4	VQ motif-containing protein 4, valine-glutamine protein 4	VQ-MOTIF PROTEIN 4		1		 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os01g0808900	LOC_Os01g59410.1				GO:0051091 - positive regulation of transcription factor activity	TO:0000592 - 1000-dehulled grain weight, TO:0000734 - grain length	
13621	VQ5	OsVQ5	VQ MOTIF-CONTAINING PROTEIN 5	VQ motif-containing protein 5, valine-glutamine protein 5	VQ MOTIF-CONTAINING PROTEIN 5		2		 Tolerance and resistance - Stress tolerance	Os02g0173200	LOC_Os02g07690.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
13622	VQ6	OsVQ6	VQ MOTIF-CONTAINING PROTEIN 6	VQ motif-containing protein 6, valine-glutamine protein 6	VQ MOTIF-CONTAINING PROTEIN 6		2		 Tolerance and resistance - Stress tolerance	Os02g0251800	LOC_Os02g15280.1						
13623	VQ7	OsVQ7	VQ MOTIF-CONTAINING PROTEIN 7	VQ motif-containing protein 7, valine-glutamine protein 7	VQ MOTIF-CONTAINING PROTEIN 7		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0251900	LOC_Os02g15290.1						
13624	VQ8	OsVQ8	VQ MOTIF-CONTAINING PROTEIN 8	VQ motif-containing protein 8, valine-glutamine protein 8	VQ MOTIF-CONTAINING PROTEIN 8		2		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0539500	LOC_Os02g33600.1						
13625	VQ9	OsVQ9	VQ MOTIF-CONTAINING PROTEIN 9	VQ motif-containing protein 9, valine-glutamine protein 9	VQ MOTIF-CONTAINING PROTEIN 9		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0753700	LOC_Os02g51740.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
13626	VQ10	OsVQ10	VQ MOTIF-CONTAINING PROTEIN 10	VQ motif-containing protein 10, DEAD-box ATP-dependent RNA helicase 12-like, valine-glutamine protein 10	VQ MOTIF-CONTAINING PROTEIN 10		3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0319000	LOC_Os03g20330.1				GO:0009751 - response to salicylic acid stimulus, GO:0016021 - integral to membrane		
13627	VQ11	OsVQ11	VQ MOTIF-CONTAINING PROTEIN 11	VQ motif-containing protein 11, valine-glutamine protein 11	VQ MOTIF-CONTAINING PROTEIN 11		3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0320600	LOC_Os03g20440.1				GO:0006970 - response to osmotic stress, GO:0005516 - calmodulin binding, GO:0009409 - response to cold, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
13628	VQ12	OsVQ12	VQ MOTIF-CONTAINING PROTEIN 12	VQ motif-containing protein 12, valine-glutamine protein 12	VQ MOTIF-CONTAINING PROTEIN 12		3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0387300	LOC_Os03g26990.1						
13629	VQ13	OsVQ13	VQ-MOTIF-CONTAINING PROTEIN 13	VQ motif-containing protein 13, valine-glutamine-motif-containing protein 13, valine-glutamine protein 13	VQ-MOTIF-CONTAINING PROTEIN 13		3		 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0676400	LOC_Os03g47280.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000397 - grain size, TO:0000303 - cold tolerance	
13630	VQ14	OsVQ14	VQ MOTIF-CONTAINING PROTEIN 14	VQ motif-containing protein 14, valine-glutamine protein 14	VQ MOTIF-CONTAINING PROTEIN 14		3		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0789100	LOC_Os03g57520.1				GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
13631	VQ15	OsVQ15	VQ MOTIF-CONTAINING PROTEIN 15	VQ motif-containing protein 15, valine-glutamine protein 15	VQ MOTIF-CONTAINING PROTEIN 15		4		 Tolerance and resistance - Disease resistance	Os04g0417600	LOC_Os04g34050.1						
13632	VQ16	OsVQ16	VQ MOTIF-CONTAINING PROTEIN 16	VQ motif-containing protein 16, valine-glutamine protein 16	VQ MOTIF-CONTAINING PROTEIN 16		4		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0645200	LOC_Os04g55240.1				GO:0009409 - response to cold, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
13633	VQ17	OsVQ17	VQ MOTIF-CONTAINING PROTEIN 17	VQ motif-containing protein 17, valine-glutamine protein 17	VQ MOTIF-CONTAINING PROTEIN 17		4		 Tolerance and resistance - Stress tolerance	Os04g0665900	LOC_Os04g57030.1						
13634	VQ18	OsVQ18	VQ MOTIF-CONTAINING PROTEIN 18	VQ motif-containing protein 18, valine-glutamine protein 18	VQ MOTIF-CONTAINING PROTEIN 18		5		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0211700	LOC_Os05g12090.1						
13635	VQ19	OsVQ19	VQ MOTIF-CONTAINING PROTEIN 19	VQ motif-containing protein 19, valine-glutamine protein 19	VQ MOTIF-CONTAINING PROTEIN 19		5		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os05g0390800	LOC_Os05g32460.1				GO:0009409 - response to cold, GO:0051091 - positive regulation of transcription factor activity	TO:0000303 - cold tolerance	
13636	VQ20	OsVQ20	VQ MOTIF-CONTAINING PROTEIN 20	VQ motif-containing protein 20, valine-glutamine protein 20	VQ MOTIF-CONTAINING PROTEIN 20		5		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0491700	LOC_Os05g41250.1						
13637	VQ21	OsVQ21	VQ MOTIF-CONTAINING PROTEIN 21	VQ motif-containing protein 21, valine-glutamine protein 21	VQ MOTIF-CONTAINING PROTEIN 21		5			Os05g0519000	LOC_Os05g44270.1						
13638	VQ22	OsVQ22	VQ MOTIF-CONTAINING PROTEIN 22	VQ motif-containing protein 22, valine-glutamine protein 22	VQ MOTIF-CONTAINING PROTEIN 22		6			Os06g0530600	LOC_Os06g33970.1						
13639	VQ23	OsVQ23	VQ MOTIF-CONTAINING PROTEIN 23	VQ motif-containing protein 23, valine-glutamine protein 23	VQ MOTIF-CONTAINING PROTEIN 23		6			Os06g0603300	LOC_Os06g40090.1						
13640	VQ24	OsVQ24	VQ MOTIF-CONTAINING PROTEIN 24	VQ motif-containing protein 24, valine-glutamine protein 24	VQ MOTIF-CONTAINING PROTEIN 24		6		 Tolerance and resistance - Stress tolerance	Os06g0618700	LOC_Os06g41450.1				GO:0009638 - phototropism, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
13641	VQ25	OsVQ25	VQ MOTIF-CONTAINING PROTEIN 25	VQ motif-containing protein 25, valine-glutamine protein 25	VQ MOTIF-CONTAINING PROTEIN 25	osvq25	6	GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance	Os06g0666400	LOC_Os06g45570.1				GO:0009742 - brassinosteroid mediated signaling, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0031348 - negative regulation of defense response, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000357 - growth and development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0025034 - leaf 
13642	VQ26	OsVQ26	VQ MOTIF-CONTAINING PROTEIN 26	VQ motif-containing protein 26, valine-glutamine protein 26	VQ MOTIF-CONTAINING PROTEIN 26		7		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0161700	LOC_Os07g06750.1						
13643	VQ27	OsVQ27	VQ MOTIF-CONTAINING PROTEIN 27	VQ motif-containing protein 27, valine-glutamine protein 27	VQ MOTIF-CONTAINING PROTEIN 27		7		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0161900	LOC_Os07g06760.1						
13644	VQ28	OsVQ28	VQ MOTIF-CONTAINING PROTEIN 28	VQ motif-containing protein 28, valine-glutamine protein 28	VQ MOTIF-CONTAINING PROTEIN 28		7		 Tolerance and resistance - Disease resistance	Os07g0162000	LOC_Os07g06790.1						
13645	VQ29	OsVQ29	VQ MOTIF-CONTAINING PROTEIN 29	VQ motif-containing protein 29, valine-glutamine protein 29	VQ MOTIF-CONTAINING PROTEIN 29		7		 Tolerance and resistance - Disease resistance	Os07g0624200	LOC_Os07g43140.1						
13646	VQ30	OsVQ30	VQ MOTIF-CONTAINING PROTEIN 30	VQ motif-containing protein 30, valine-glutamine protein 30	VQ MOTIF-CONTAINING PROTEIN 30		7	a promising candidate gene in qHT7 (QTL for heat tolerance, Chr7: 29067638-29223510 bp).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0686600	LOC_Os07g48710.1				GO:0005516 - calmodulin binding, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
13647	VQ31	OsVQ31	VQ MOTIF-CONTAINING PROTEIN 31	VQ motif-containing protein 31, valine-glutamine protein 31	VQ MOTIF-CONTAINING PROTEIN 31		7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0687400	LOC_Os07g48800.1						
13648	VQ32	OsVQ32	VQ MOTIF-CONTAINING PROTEIN 32	VQ motif-containing protein 32, valine-glutamine protein 32	VQ MOTIF-CONTAINING PROTEIN 32		8		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0102900	LOC_Os08g01260.1				GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
13649	VQ33	OsVQ33	VQ MOTIF-CONTAINING PROTEIN 33	VQ motif-containing protein 33, valine-glutamine protein 33	VQ MOTIF-CONTAINING PROTEIN 33		8		 Tolerance and resistance - Disease resistance	Os08g0409500	LOC_Os08g31660.1						
13650	VQ34	OsVQ34	VQ MOTIF-CONTAINING PROTEIN 34	VQ motif-containing protein 34, valine-glutamine protein 34	VQ MOTIF-CONTAINING PROTEIN 34		9		 Tolerance and resistance - Stress tolerance	Os09g0365000	LOC_Os09g20020.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
13651	VQ35	OsVQ35	VQ MOTIF-CONTAINING PROTEIN 35	VQ motif-containing protein 35, valine-glutamine protein 35	VQ MOTIF-CONTAINING PROTEIN 35		9		 Tolerance and resistance - Stress tolerance	Os09g0370500	LOC_Os09g20460.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
13652	VQ36	OsVQ36	VQ MOTIF-CONTAINING PROTEIN 36	VQ motif-containing protein 36, valine-glutamine protein 36	VQ MOTIF-CONTAINING PROTEIN 36		10		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0101800	LOC_Os10g01240.1						
13653	VQ37	OsVQ37	VQ MOTIF-CONTAINING PROTEIN 37	VQ motif-containing protein 37, valine-glutamine protein 37	VQ MOTIF-CONTAINING PROTEIN 37		11		 Tolerance and resistance - Stress tolerance	Os11g0131100	LOC_Os11g03660.1						
13654	VQ38	OsVQ38	VQ MOTIF-CONTAINING PROTEIN 38	VQ motif-containing protein 38, valine-glutamine protein 38	VQ MOTIF-CONTAINING PROTEIN 38		11		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0235900	LOC_Os11g12790.1						
13655	VQ39	OsVQ39	VQ MOTIF-CONTAINING PROTEIN 39	VQ motif-containing protein 39, valine-glutamine protein 39	VQ MOTIF-CONTAINING PROTEIN 39		12		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0127800	LOC_Os12g03420.1						
13656	CIP73	OsCIP73, OsCIP73_like	CCAMK-INTERACTING PROTEIN OF APPROXIMATELY 73 KD	CCaMK-interacting protein of approximately 73 kD	CCAMK-INTERACTING PROTEIN OF APPROXIMATELY 73 KD		8	GO:0071818: BAT3 complex.	 Seed - Physiological traits	Os08g0295000/Os08g0295100	LOC_Os08g19830.1, LOC_Os08g19830.3				GO:0031593 - polyubiquitin binding, GO:0030433 - ER-associated protein catabolic process, GO:0051787 - misfolded protein binding	TO:0000430 - germination rate	
13657	LRK6	OsLRK6, OsPSKR4, PSKR4	LEUCINE-RICH RECEPTOR-LIKE KINASE 6	leucine-rich receptor-like kinase 6, Phytosulfokine Receptor 4	LEUCINE-RICH RECEPTOR-LIKE KINASE 6		2	AY730046 (OsInlk6; LRR). DQ195081 (ABA41563.1). AY756174 (AAV33328.1, Oryza rufipogon). LRK6 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.	 Tolerance and resistance - Stress tolerance	Os02g0153400	LOC_Os02g05930.1				GO:0001653 - peptide receptor activity, GO:0004888 - transmembrane receptor activity, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009049 - inflorescence 
13658	_	Os-AT1	_	AT hook-containing protein 1, AT hook-containing DNA-binding protein 1			5	X88798.	 Other	Os05g0597200	LOC_Os05g51850.1, LOC_Os05g51850.2, LOC_Os05g51850.3				GO:0000786 - nucleosome, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006334 - nucleosome assembly		
13659	_	Os-AT2	_	AT hook-containing protein 2, AT hook-containing DNA-binding protein 2				X88799.	 Other						GO:0003677 - DNA binding		
13660	_	Os-PF1, PF1	_	positive factor 1			9	an A-T hook-containing DNA binding protein. an HMG-I/Y protein. L24390.	 Other	Os09g0402100	LOC_Os09g23730.1				GO:0005634 - nucleus, GO:0001708 - cell fate specification, GO:0003677 - DNA binding, GO:0008283 - cell proliferation, GO:0006334 - nucleosome assembly, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000786 - nucleosome		
13661	_	OsGT-2, GT-2, OsMSL22, MSL22	_	Myb/SANT-LIKE 22, GT-motif protein 2			4	X68261. a DNA binding protein. a transcriptional activator.	 Other	Os04g0541100	LOC_Os04g45750.2, LOC_Os04g45750.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus		PO:0009005 - root 
13663	_	REF1A	_	ELONGATION FACTOR 1A, Elongation factor 1-alpha, EF-1-alpha, translation elongation factor 1A	_			AF067195. Northern hybridization using REF1A fragment as a probe showed that salt, drought, cold and heat-shock stresses induced the transcription of eEF1A genes. (Because of the REF1A fragment shows significant sequence homology to sequences of other rice eEF1A gene members,  it is possible that transcription of different eEF1A members were detected.)	 Tolerance and resistance - Stress tolerance						GO:0003746 - translation elongation factor activity		
13664	_	Os GPT	_	glucose-6-phosphate/phosphate-translocator			5	AB060277. a cerebroside elicitor-responsive gene.	 Tolerance and resistance - Disease resistance	Os05g0168700	LOC_Os05g07670.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
13665	SBP	Os SBP, OsSBP	SELENIUM-BINDING PROTEIN	selenium-binding protein, selenium-binding protein homologue	SELENIUM-BINDING PROTEIN		1	AB059401. AU174343, AU174344. a cerebroside elicitor-responsive gene. a rice homolog of mammalian selenium-binding protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0916400	LOC_Os01g68770.1				GO:0046686 - response to cadmium ion, GO:0050832 - defense response to fungus, GO:0008430 - selenium binding, GO:0010197 - polar nucleus fusion, GO:0071291 - cellular response to selenium ion, GO:0002238 - response to molecule of fungal origin, GO:0000103 - sulfate assimilation, GO:0042542 - response to hydrogen peroxide	TO:0000432 - temperature response trait, TO:0000074 - blast disease	
13666	BRD1	OsBrd1, Brd1	BROMODOMAIN-CONTAINING PROTEIN 1	kinase-like protein, bromodomain-containing protein 1	BROMODOMAIN-CONTAINING PROTEIN 1		2	AB060276. a cerebroside elicitor-responsive gene. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0601800	LOC_Os02g38980.1, LOC_Os02g38980.3, LOC_Os02g38980.4, LOC_Os02g38980.5, LOC_Os02g38980.6				GO:0009414 - response to water deprivation, GO:0016301 - kinase activity, GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0002238 - response to molecule of fungal origin	TO:0000276 - drought tolerance, TO:0000074 - blast disease	PO:0009010 - seed , PO:0009006 - shoot system , PO:0009066 - anther , PO:0009005 - root , PO:0009049 - inflorescence 
13667	S5A	OsS5a, S5a, OsRpn10, Rpn10, OsvWA9, vWA9	26S PROTEASOME SUBUNIT 5A	Subunit 5 a, 26S proteasome subunit 5a, 19S regulatory particle non-ATPase subunit 10, RP non-ATPase 10, Regulatory Particle Non-ATPase 10, 26S prote- asome non-ATPase regulatory subunit 4, von Willebrand factor A9	26S PROTEASOME SUBUNIT 5A		3	AB010740. a homolog of Arabidopsis MBP1. a 19S regulatory particle subunit from the rice 26S proteasome. AU032656. AB037151.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0243300	LOC_Os03g13970.1, LOC_Os03g13970.2	GR:0061400			GO:0051788 - response to misfolded protein, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009744 - response to sucrose stimulus, GO:0051607 - defense response to virus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0006974 - response to DNA damage stimulus, GO:0010029 - regulation of seed germination, GO:0043248 - proteasome assembly, GO:0001653 - peptide receptor activity, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0048528 - post-embryonic root development, GO:0009555 - pollen development, GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus, GO:0048767 - root hair elongation, GO:0048455 - stamen formation	TO:0000148 - viral disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	PO:0000026 - primary root tip 
13668	ALDH3E1	OS-ALDH, OsALDH3E1	ALDEHYDE DEHYDROGENASE 3E1	aldehyde dehydrogenase, Aldehyde Dehydrogenase-Like Protein, aldehyde dehydrogenase 3E1	ALDEHYDE DEHYDROGENASE 3E1		2	LOC_Os02g43194. AF148877. 	 Biochemical character	Os02g0646500	LOC_Os02g43194.1				GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity, GO:0009507 - chloroplast, GO:0006081 - cellular aldehyde metabolic process	TO:0000723 - microsporocyte development trait	
13669	IAI1	OsIAI1, OsECT1, ECT1	INCOMPATIBLE STRAIN OF P. AVENAE-INDUCED GENE 1	incompatible strain of P. avenae-induced gene 1, Evolutionarily conserved C terminal region 1, YTH domain protein ECT1	INCOMPATIBLE STRAIN OF P. AVENAE-INDUCED PROTEIN 1		1	AB059237. N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0329800	LOC_Os01g22630.1, LOC_Os01g22630.2				GO:0009409 - response to cold, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0009611 - response to wounding	TO:0006001 - salt tolerance, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
13670	IAI2	OsIAI2	INCOMPATIBLE STRAIN OF P. AVENAE-INDUCED GENE 2INCOMPATIBLE STRAIN OF P. AVENAE-INDUCED PROTEIN 1	incompatible strain of P. avenae-induced gene 2	INCOMPATIBLE STRAIN OF P. AVENAE-INDUCED PROTEIN 2		1	AB059238.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0132000	LOC_Os01g04050.1				GO:0005576 - extracellular region, GO:0008233 - peptidase activity, GO:0006508 - proteolysis, GO:0004867 - serine-type endopeptidase inhibitor activity		
13671	_	CAI1	_	compatible strain of P. avenae-induced gene 1			10	AB059239.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0452300	LOC_Os10g31460.1						
13672	_	thyA	_	Thymidylate Synthase				AB023402.	 Biochemical character						GO:0004799 - thymidylate synthase activity, GO:0006231 - dTMP biosynthetic process		
13673	HT	OsHT, OsLHT1, LHT1	HISTIDINE TRANSPORTER	Histidine Transporter, lysine and histidine transporter 1, lysine-histidine-like transporter 1, Lysine/Histidine transporter 1, Lysine-Histidine-type Transporter 1	HISTIDINE TRANSPORTER	oslht1, oslht1-1, oslht1-2	8	AJ557777. GO:0080167:response to karrikin. PO:0030123: panicle inflorescence. GO:0071705: nitrogen compound transport. TO:0020093: nitrogen content. TO:0001069: cooking quality trait. GO:0035618: root hair. TO:0020096: mineral and ion transport trait. GO:0072488: ammonium transmembrane transport. GO:1904844: response to L-glutamine. GO:1905429: response to glycine. PO:0030123: panicle inflorescence.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Biochemical character,  Character as QTL - Plant growth activity	Os08g0127100	LOC_Os08g03350.1				GO:0043090 - amino acid import, GO:0019740 - nitrogen utilization, GO:0010233 - phloem transport, GO:0015800 - acidic amino acid transport, GO:0042886 - amide transport, GO:0048367 - shoot development, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010238 - response to proline, GO:0080053 - response to phenylalanine, GO:0043200 - response to amino acid stimulus, GO:0005886 - plasma membrane, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0006865 - amino acid transport	TO:0000162 - seed quality, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000346 - tiller number, TO:0000615 - abscisic acid sensitivity, TO:0000409 - peak viscosity, TO:0000621 - inflorescence development trait, TO:0000227 - root length, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000040 - panicle length, TO:0000590 - grain weight, TO:0000653 - seed development trait, TO:0000654 - shoot development trait, TO:0002673 - amino acid content, TO:0000598 - protein content, TO:0000138 - brown rice protein, TO:0000447 - filled grain number, TO:0000196 - amylose content, TO:0000455 - seed set percent, TO:0000371 - yield trait, TO:0000379 - cool paste viscosity, TO:0000396 - grain yield, TO:0000303 - cold tolerance, TO:0000576 - stem length, TO:0000430 - germination rate	PO:0009005 - root , PO:0009049 - inflorescence , PO:0020148 - shoot apical meristem , PO:0009047 - stem , PO:0006036 - root epidermis , PO:0020103 - flag leaf , PO:0001083 - inflorescence development stage , PO:0000258 - root cortex , PO:0020124 - root stele , PO:0000048 - leaf lamina vascular system , PO:0005772 - exodermis , PO:0005427 - sclerenchyma , PO:0005059 - root endodermis , PO:0025261 - pericycle cell , PO:0001170 - seed development stage , PO:0020104 - leaf sheath , PO:0020138 - leaf lamina vein , PO:0025413 - primary leaf vein , PO:0025395 - floral organ , PO:0025066 - stalk , PO:0005020 - vascular bundle , PO:0025034 - leaf 
13674	_	OsF5HL, F5HL, CYP84A7	_	Ferulate-5-hydroxylase			6	AB207252. AQ160861.	 Vegetative organ - Leaf,  Biochemical character	Os06g0349700	LOC_Os06g24180.1				GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0010224 - response to UV-B, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005783 - endoplasmic reticulum, GO:0046424 - ferulate 5-hydroxylase activity		
13675	F5HL2	OsF5HL2, CYP84A6, OsCYP84A6, OsF5H1, F5H1, OsCYP71AB10, CYP71AB10	FERULE-5-HYDROXYLASE-LIKE 2	Ferulate-5-hydroxylase 2, ferule-5-hydroxylase-like 2, Cytochrome P450 84A6	FERULE-5-HYDROXYLASE-LIKE 2		3	AB207253. BGIOSGA011586. OsF5H1 in Zhao et al. 2019. OsCYP71AB10 in Sahoo et al. 2023.	 Biochemical character,  Vegetative organ - Leaf	Os03g0112900	LOC_Os03g02180.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0010224 - response to UV-B, GO:0005783 - endoplasmic reticulum, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0009807 - lignan biosynthetic process, GO:0009055 - electron carrier activity, GO:0046424 - ferulate 5-hydroxylase activity, GO:0016021 - integral to membrane, GO:0020037 - heme binding	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
13676	_	BIP103	_	brassinosteroid receptor kinase (BRI1)-interacting protein 103, BRI1-interacting protein 103, brassinosteroid receptor kinase-interacting protein 103			9	AB117987.		Os09g0346400	LOC_Os09g17730.1, LOC_Os09g17730.2				GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum		
13677	_	BIP131	_	brassinosteroid receptor kinase (BRI1)-interacting protein 131, BRI1-interacting protein 131, brassinosteroid receptor kinase-interacting protein 131			8	AB117988. LOC_Os08g30060. proton pump interactor in Soda et al. 2016.	 Tolerance and resistance - Stress tolerance	Os08g0390000	LOC_Os08g30060.1, LOC_Os08g30060.2				GO:0005783 - endoplasmic reticulum, GO:0009628 - response to abiotic stimulus, GO:0006950 - response to stress, GO:0005886 - plasma membrane	TO:0000168 - abiotic stress trait	
13678	_	BIP115, OsRH18	_	brassinosteroid receptor kinase (BRI1)-interacting protein 115, BRI1-interacting protein 115, brassinosteroid receptor kinase-interacting protein 115, RNA helicase 18			1	AB118002. Q761Z9. LOC_Os01g07080. DEAD-box RNA helicase protein.	 Biochemical character	Os01g0164500	LOC_Os01g07080.1, LOC_Os01g07080.2				GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding		
13679	_	BIP124	_	brassinosteroid receptor kinase (BRI1)-interacting protein 124, BRI1-interacting protein 124, brassinosteroid receptor kinase-interacting protein 124			11	AB118011. LOC_Os11g38920.		Os11g0602300	LOC_Os11g38920.1, LOC_Os11g38920.2				GO:0016021 - integral to membrane		
13680	_	BIP129	_	brassinosteroid receptor kinase (BRI1)-interacting protein 129, BRI1-interacting protein 129, brassinosteroid receptor kinase-interacting protein 129			8	AB118016.		Os08g0519400	LOC_Os08g40790.1, LOC_Os08g40790.2, LOC_Os08g40790.3, LOC_Os08g40790.4				GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane		
13681	_	OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28	_	brassinosteroid receptor kinase (BRI1)-interacting protein 110, BRI1-interacting protein 110, brassinosteroid receptor kinase-interacting protein 110, ubiquitin-specific processing protease 7-4			6	AB117997. OsUBP28 in Ma et al. 2019.	 Biochemical character	Os06g0184300	LOC_Os06g08530.5, LOC_Os06g08530.1, LOC_Os06g08530.2, LOC_Os06g08530.3, LOC_Os06g08530.4				GO:0008234 - cysteine-type peptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004221 - ubiquitin thiolesterase activity		PO:0009029 - stamen 
13682	_	BIP112	_	brassinosteroid receptor kinase (BRI1)-interacting protein 112, BRI1-interacting protein 112, brassinosteroid receptor kinase-interacting protein 112			1	AB117999.		Os01g0924900	LOC_Os01g70020.1				GO:0003677 - DNA binding		
13683	_	BIP106	_	brassinosteroid receptor kinase (BRI1)-interacting protein 106, BRI1-interacting protein 106, brassinosteroid receptor kinase-interacting protein 106			4	AB117993.		Os04g0501600	LOC_Os04g42320.1				GO:0003677 - DNA binding		
13684	_	BIP135	_	brassinosteroid receptor kinase (BRI1)-interacting protein 135, BRI1-interacting protein 135, brassinosteroid receptor kinase-interacting protein 135			2	AB118021.		Os02g0612800	LOC_Os02g39920.1				GO:0003677 - DNA binding		
13685	_	BIP101	_	brassinosteroid receptor kinase (BRI1)-interacting protein 101, BRI1-interacting protein 101, brassinosteroid receptor kinase-interacting protein 101			3	AB117989.		Os03g0350100	LOC_Os03g22730.1				GO:0016020 - membrane, GO:0005730 - nucleolus		
13686	_	BIP102	_	brassinosteroid receptor kinase (BRI1)-interacting protein 102, BRI1-interacting protein 102, brassinosteroid receptor kinase-interacting protein 102			3	AB117990.		Os03g0350300	LOC_Os03g22740.1				GO:0016020 - membrane, GO:0005730 - nucleolus		
13687	_	BIP104	_	brassinosteroid receptor kinase (BRI1)-interacting protein 104, BRI1-interacting protein 104, brassinosteroid receptor kinase-interacting protein 104			1	AB117991. Q9LGR0.	 Other	Os01g0184900	LOC_Os01g08970.1, LOC_Os01g08970.2				GO:0005730 - nucleolus, GO:0005694 - chromosome, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006281 - DNA repair, GO:0006351 - transcription, DNA-dependent, GO:0006260 - DNA replication		
13688	BIP127	OsBIP127, TRBF2, OsTRBF2, Os2R_MYB99, 2R_MYB99	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 127	brassinosteroid receptor kinase (BRI1)-interacting protein 127, BRI1-interacting protein 127, brassinosteroid receptor kinase-interacting protein 127, telomere repeat-binding factor 2, R2R3-MYB Transcription Factor 99	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 127		12	AB118014.	 Other,  Tolerance and resistance - Stress tolerance	Os12g0613300	LOC_Os12g41920.1, LOC_Os12g41920.2, LOC_Os12g41920.3				GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006334 - nucleosome assembly, GO:0046686 - response to cadmium ion, GO:0042162 - telomeric DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0043047 - single-stranded telomeric DNA binding, GO:0003691 - double-stranded telomeric DNA binding, GO:0000786 - nucleosome, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance	
13689	BIP133	OsBIP133, OsMYB87, MYB87	BRI1-INTERACTING PROTEIN 133	brassinosteroid receptor kinase (BRI1)-interacting protein 133, BRI1-interacting protein 133, brassinosteroid receptor kinase-interacting protein 133, MYB TRANSCRIPTION FACTOR 87	BRI1-INTERACTING PROTEIN 133		7	AB118019.	 Other	Os07g0139500	LOC_Os07g04700.1, LOC_Os07g04700.2, LOC_Os07g04700.3, LOC_Os07g04700.5, LOC_Os07g04700.6				GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0009688 - abscisic acid biosynthetic process		
13690	_	BIP113	_	brassinosteroid receptor kinase (BRI1)-interacting protein 113, BRI1-interacting protein 113, brassinosteroid receptor kinase-interacting protein 113			8	AB118000.	 Other	Os08g0113200	LOC_Os08g02130.1, LOC_Os08g02130.2				GO:0003723 - RNA binding, GO:0000166 - nucleotide binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0009560 - embryo sac egg cell differentiation, GO:0006397 - mRNA processing, GO:0005634 - nucleus		
13691	_	BIP108	_	brassinosteroid receptor kinase (BRI1)-interacting protein 108, BRI1-interacting protein 108, brassinosteroid receptor kinase-interacting protein 108, development-specific protein 217, EBER-associated protein			3	AB117995. D15732, D15514.	 Other	Os03g0343500	LOC_Os03g22340.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0022625 - cytosolic large ribosomal subunit, GO:0005886 - plasma membrane		
13692	BIP123	OsBIP123, RPL24a, OsRPL24a, RPL24B, OsRPL24B	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 123	brassinosteroid receptor kinase (BRI1)-interacting protein 123, BRI1-interacting protein 123, brassinosteroid receptor kinase-interacting protein 123, ribosomal protein L24a	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 123		1	AB118010. RPL24B in Bakshi et al. 2023. GO:1902626: assembly of large subunit precursor of pre ribosome. PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os01g0815800	LOC_Os01g59990.1, LOC_Os01g59990.2				GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0048467 - gynoecium development, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0000027 - ribosomal large subunit assembly, GO:0022625 - cytosolic large ribosomal subunit, GO:0009734 - auxin mediated signaling pathway, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0005730 - nucleolus	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009006 - shoot system , PO:0020032 - plumule , PO:0009005 - root , PO:0020103 - flag leaf , PO:0009046 - flower , PO:0000003 - whole plant , PO:0020031 - radicle 
13693	_	BIP107	_	brassinosteroid receptor kinase (BRI1)-interacting protein 107, BRI1-interacting protein 107, brassinosteroid receptor kinase-interacting protein 107			9	AB117994.	 Other	Os09g0326900	LOC_Os09g15770.1, LOC_Os09g15775.1				GO:0005737 - cytoplasm, GO:0003743 - translation initiation factor activity, GO:0016070 - RNA metabolic process, GO:0005634 - nucleus		
13694	_	BIP126	_	brassinosteroid receptor kinase (BRI1)-interacting protein 126, BRI1-interacting protein 126, brassinosteroid receptor kinase-interacting protein 126			8	AB118013.	 Other	Os08g0304900	LOC_Os08g21330.1, LOC_Os08g21330.3				GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity, GO:0019104 - DNA N-glycosylase activity, GO:0008270 - zinc ion binding, GO:0006289 - nucleotide-excision repair, GO:0006284 - base-excision repair, GO:0003684 - damaged DNA binding		
13695	_	BIP109	_	brassinosteroid receptor kinase (BRI1)-interacting protein 109, BRI1-interacting protein 109, brassinosteroid receptor kinase-interacting protein 109			11	AB117996.		Os11g0703400	LOC_Os11g47710.1				GO:0015031 - protein transport		
13696	_	BIP111	_	brassinosteroid receptor kinase (BRI1)-interacting protein 111, BRI1-interacting protein 111, brassinosteroid receptor kinase-interacting protein 111			9	AB117998.	 Other	Os09g0116400	LOC_Os09g02810.1				GO:0010197 - polar nucleus fusion, GO:0015031 - protein transport, GO:0005730 - nucleolus		
13697	_	BIP116	_	brassinosteroid receptor kinase (BRI1)-interacting protein 116, BRI1-interacting protein 116, brassinosteroid receptor kinase-interacting protein 116			3	AB118003.		Os03g0799100	LOC_Os03g58480.1, LOC_Os03g58480.2						
13698	_	BIP117	_	brassinosteroid receptor kinase (BRI1)-interacting protein 117, BRI1-interacting protein 117, brassinosteroid receptor kinase-interacting protein 117			12	AB118004.		Os12g0564600	LOC_Os12g37720.1				GO:0008270 - zinc ion binding, GO:0009793 - embryonic development ending in seed dormancy, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0003676 - nucleic acid binding		
13699	_	BIP118	_	brassinosteroid receptor kinase (BRI1)-interacting protein 118, BRI1-interacting protein 118, brassinosteroid receptor kinase-interacting protein 118			2	AB118005.		Os02g0200800 	LOC_Os02g10690.1, LOC_Os02g10690.2						
13700	_	BIP119	_	brassinosteroid receptor kinase (BRI1)-interacting protein 119, BRI1-interacting protein 119, brassinosteroid receptor kinase-interacting protein 119			9	AB118006. Q67J19.		Os09g0459500	LOC_Os09g28550.1				GO:0009742 - brassinosteroid mediated signaling, GO:0006629 - lipid metabolic process		
13701	BIP120	OsBIP120, qCTS-9, TAF2, OsTAF2	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 120	brassinosteroid receptor kinase (BRI1)-interacting protein 120, BRI1-interacting protein 120, brassinosteroid receptor kinase-interacting protein 120, transcription initiation factor TFIID subunit 2	BRASSINOSTEROID RECEPTOR KINASE-INTERACTING PROTEIN 120		9	AB118007. Os09g0410300 is the functional gene of a cold-tolerant QTL qCTS-9.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0410300	LOC_Os09g24440.1				GO:0008270 - zinc ion binding, GO:0009630 - gravitropism, GO:0008237 - metallopeptidase activity, GO:0009409 - response to cold, GO:0009506 - plasmodesma	TO:0000303 - cold tolerance, TO:0000397 - grain size	
13702	_	BIP121	_	brassinosteroid receptor kinase (BRI1)-interacting protein 121, BRI1-interacting protein 121, brassinosteroid receptor kinase-interacting protein 121			2	AB118008.	 Other	Os02g0122300	LOC_Os02g02990.1				GO:0003743 - translation initiation factor activity, GO:0006413 - translational initiation, GO:0016020 - membrane, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0001731 - formation of translation preinitiation complex		
13703	_	BIP128	_	brassinosteroid receptor kinase (BRI1)-interacting protein 128, BRI1-interacting protein 128, brassinosteroid receptor kinase-interacting protein 128			1	AB118015.		Os01g0179300	LOC_Os01g08410.1				GO:0005507 - copper ion binding		
13704	_	BIP130	_	brassinosteroid receptor kinase (BRI1)-interacting protein 130, BRI1-interacting protein 130, brassinosteroid receptor kinase-interacting protein 130			5	AB118017.		Os05g0113500	LOC_Os05g02260.1, LOC_Os05g02260.2, LOC_Os05g02260.3, LOC_Os05g02260.4				GO:0005507 - copper ion binding		
13705	_	BIP132	_	brassinosteroid receptor kinase (BRI1)-interacting protein 132, BRI1-interacting protein 132, brassinosteroid receptor kinase-interacting protein 132			12	AB118018.		Os12g0613500	LOC_Os12g41930.1, LOC_Os12g41930.2, LOC_Os12g41930.3				GO:0005730 - nucleolus		
13706	_	BIP134, OsBIP134	_	brassinosteroid receptor kinase (BRI1)-interacting protein 134, BRI1-interacting protein 134, brassinosteroid receptor kinase-interacting protein 134			12	AB118020. OsCaM1 target gene.		Os12g0271600	LOC_Os12g17310.1				GO:0005886 - plasma membrane		
13708	_		_	U1 snRNA, U1-snRNA, U1 small nuclear RNA				DQ530626, DQ530627, DQ530628, DQ530629.									
13709	_		_	U6 snRNA, U6-snRNA, U6 small nuclear RNA				DQ649294, DQ649295, DQ649296, DQ649297.									
13710	_		_	U4 snRNA, U4-snRNA, U4 small nuclear RNA				DQ649298, DQ649299, DQ649300, DQ649301.									
13711	_	GOS2, OseIF1, OsGOS2, SUI1, PtfS	_	translation initiation factor eIF1, protein translation factor SUI1			7	X51910. A6MZM2, Q0D5W6. D10959 (partial cds). FJ358538. AF094774. AU175087, AU175088, AU077773, AU077774. LOC_Os07g34589.	 Other,  Tolerance and resistance - Stress tolerance	Os07g0529800	LOC_Os07g34589.2, LOC_Os07g34589.3, LOC_Os07g34589.4, LOC_Os07g34589.6				GO:0006417 - regulation of translation, GO:0003743 - translation initiation factor activity	TO:0006001 - salt tolerance, TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity	
13712	ADKA	Adk-a, OsAdk-a, OsAK3, AK3	ADENYLATE KINASE A	adenylate kinase a	ADENYLATE KINASE A	osak3, osak3-r	12	D10334. Q08479. D10429 (partial cds). OsAK3 in Zhang et al. 2021. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Biochemical character,  Vegetative organ - Culm	Os12g0236400	LOC_Os12g13380.1				GO:0005739 - mitochondrion, GO:0004017 - adenylate kinase activity, GO:0005507 - copper ion binding, GO:0005524 - ATP binding, GO:0080050 - regulation of seed development, GO:0009741 - response to brassinosteroid stimulus, GO:0001558 - regulation of cell growth, GO:0009742 - brassinosteroid mediated signaling, GO:0005737 - cytoplasm, GO:0046686 - response to cadmium ion, GO:0006163 - purine nucleotide metabolic process, GO:0005886 - plasma membrane	TO:0000397 - grain size, TO:0000734 - grain length, TO:0002677 - brassinosteroid sensitivity, TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0002676 - brassinosteroid content	PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0009005 - root 
13713	ADKB	Adk-b	ADENYLATE KINASE B	adenylate kinase b	ADENYLATE KINASE B		11	D10334. Q08480.	 Biochemical character	Os11g0312400					GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0006163 - purine nucleotide metabolic process, GO:0004017 - adenylate kinase activity, GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0005507 - copper ion binding		
13714	ALDC2	GSC 233, AldC-2, OsAldC-2, OsFBA, FBA	ALDOLASE C-2	fructose-diphosphate aldolase, Fructose-bisphosphate aldolase, aldolase isozyme C-2, aldolase C-2, cytoplasmic aldolase C-2	ALDOLASE C-2		5	gravity specific cDNA. D11137, S56877. X53130. P17784. D23133. miR2275b-target. GO:0080167: response to karrikin. 	 Tolerance and resistance - Stress tolerance	Os05g0402700	LOC_Os05g33380.1				GO:0046686 - response to cadmium ion, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0048046 - apoplast, GO:0004332 - fructose-bisphosphate aldolase activity, GO:0005507 - copper ion binding, GO:0005740 - mitochondrial envelope, GO:0005886 - plasma membrane, GO:0006096 - glycolysis, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm		
13715	_	GSC 381, OsLEA6	_	group 6 Late Embryogenesis Abundant (LEA) protein, late embryogenesis abundant protein 6			9	gravity specific cDNA. D11138, S56878. Q07078. EEE69924. two identical copies of the LEA6 gene(Os09g0482300 and Os09g0482550).	 Tolerance and resistance - Stress tolerance	Os09g0482300					GO:0006457 - protein folding, GO:0005524 - ATP binding, GO:0009908 - flower development, GO:0010286 - heat acclimation, GO:0048366 - leaf development, GO:0050821 - protein stabilization, GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0005618 - cell wall, GO:0005730 - nucleolus, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0048046 - apoplast, GO:0071277 - cellular response to calcium ion, GO:0006952 - defense response	TO:0000188 - drought sensitivity, TO:0000615 - abscisic acid sensitivity	
13716	PRO13B.2	Prol-21, pro13b.2, OsPRO13B.2, PROLM20	13 KDA PROLAMIN B.2	Prolamin 20, 13 kDa prolamin B.2	13 KDA PROLAMIN B.2		7	D11385, S39468. Q42465. AK242799, Os07g0219300, LOC_Os07g11910 (Yoon et al. 2012). PROLM20 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os07g0219300	LOC_Os07g11910.1				GO:0005773 - vacuole, GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum, GO:0009408 - response to heat, GO:0033095 - aleurone grain, GO:0045735 - nutrient reservoir activity	TO:0000259 - heat tolerance	PO:0009089 - endosperm 
13717	_	RP-2 or RP-4, prx13	_	peroxidase component RP-2 or RP-4, class III peroxidase 13			1	RP-2 and/or RP-4: D10253, S80193. BN000542.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0326100	LOC_Os01g22249.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
13719	_	RP-6	_	peroxidase component RP-6					 Biochemical character						GO:0004601 - peroxidase activity		
13720	_	RP-7	_	peroxidase component RP-7					 Biochemical character						GO:0004601 - peroxidase activity		
13721	_	RP-I	_	peroxidase component RP-I					 Biochemical character						GO:0004601 - peroxidase activity		
13722	_		_	copia-like retrotransposon reverse transcriptase				M94492.	 Other								
13725	_		_	25S ribosomal RNA, 25S rRNA				M11585.									
13726	ORYB	OsRD21, RD21, OsORYB	ORYZAIN BETA CHAIN	oryzain beta	ORYZAIN BETA CHAIN		4	D90407. P25777.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0670200	LOC_Os04g57440.1, LOC_Os04g57440.2				GO:0050832 - defense response to fungus, GO:0004197 - cysteine-type endopeptidase activity, GO:0006508 - proteolysis	TO:0000074 - blast disease	
13727	ORYC	OsORYC	ORYZAIN GAMMA CHAIN	oryzain gamma	ORYZAIN GAMMA CHAIN		9	D90408. P25778.	 Biochemical character	Os09g0442300	LOC_Os09g27030.2				GO:0004197 - cysteine-type endopeptidase activity, GO:0007568 - aging, GO:0005773 - vacuole, GO:0006508 - proteolysis, GO:0009723 - response to ethylene stimulus		
13728	_	atpA, RMtATPa	_	F1-ATPase alpha subunit, mitochondrial ATP synthase a			Mt	X51422. P0C522.	 Biochemical character						GO:0005886 - plasma membrane, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0050897 - cobalt ion binding, GO:0005524 - ATP binding, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0005743 - mitochondrial inner membrane, GO:0005773 - vacuole, GO:0005739 - mitochondrion, GO:0008270 - zinc ion binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0005730 - nucleolus, GO:0006979 - response to oxidative stress, GO:0005507 - copper ion binding, GO:0008266 - poly(U) RNA binding, GO:0009451 - RNA modification, GO:0015986 - ATP synthesis coupled proton transport, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0005618 - cell wall, GO:0009941 - chloroplast envelope		
13729	_	atp9, RMtATP9, aatp9	_	F0-atpase proteolipid, mitochondrial ATP synthase 9, ATP synthase F0 subunit 9			Mt	LOC_Osm1g00430. X16936. P0C518, P0C519. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99366 (cultivar Nipponbare), DQ167807 (isolate PA64S). D38481. BA000029: BAC19885 (Nipponbare complete mitochondrial genome). JN861111: AER13031, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03705 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19885 (DQ167400: AAZ99366) and JN861111: AER13031 (JF281153: AEZ03705) are in conflict.	 Biochemical character		LOC_Osm1g00430				GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0016021 - integral to membrane, GO:0009451 - RNA modification, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0008289 - lipid binding, GO:0031966 - mitochondrial membrane, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0015986 - ATP synthesis coupled proton transport		
13730	_	cox3, coxIII, cox3a, cox3b, cox3c	_	cytochrome oxidase subunit 3, mitochondrial respiratory chain complex IV subunit 3, Cytochrome c oxidase subunit 3			Mt	LOC_Osm1g00110. X17040. P14852. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99391 (cultivar Nipponbare), DQ167807 (isolate PA64S). M74241.     JN402178-JN402180 (O. sativa and O. rufipogon). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19853 (Nipponbare complete mitochondrial genome). JN861111: AER12991, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03745 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19853 and DQ167400: AAZ99391 (JN861111 and JF281153) are in conflict.	 Biochemical character		LOC_Osm1g00110				GO:0016021 - integral to membrane, GO:0005739 - mitochondrion, GO:0004129 - cytochrome-c oxidase activity, GO:0005743 - mitochondrial inner membrane, GO:0019646 - aerobic electron transport chain		
13731	PRO13B.3	Prol-22, pro13b.3, OsPRO13B.3, PROLM22	13 KDA PROLAMIN B.3	prolamin 22, 13 kDa prolamin B.3	13 KDA PROLAMIN B.3		7	X53856. EF122445. LOC_Os07g11920. Os07g0220050 (obsolete)  (in Yoon et al. 2012, Ncbi, UniProt). PROLM22 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0219400	LOC_Os07g11920.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
13732	_		_	prolamin			5	X53857.	 Seed - Physiological traits - Storage substances								
13733	_		_	glutelin			1	X52153 (promoter sequence).	 Seed - Physiological traits - Storage substances								
13734	CYSR10	Prol-01, CysR10, OsCysR10, crP10, pro10.1, Ospro10.1	CYSTEINE-RICH 10KDA PROLAMIN	10kDa prolamin, sulfur-rich 10 kDa prolamin, 10 kDa sulfurrich prolamin, cysteine-rich 10kDa prolamin, Cys-rich 10-kDa prolamin, 10 kDa prolamin 1	CYSTEINE-RICH 10KDA PROLAMIN		3	X17074. X15231. X84649. AY427572 (promoter). Q0DN94. L36604. A2XMB2. X51487-X51495 (Oryza rufipogon and Oryza longistaminata). EF122438. LOC_Os03g55730 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os03g0766100					GO:0045735 - nutrient reservoir activity, GO:0005773 - vacuole, GO:0042735 - protein body, GO:0033095 - aleurone grain, GO:0005783 - endoplasmic reticulum	TO:0002661 - seed maturation	PO:0009089 - endosperm 
13735	_	cob, cob-1, cob-like, cyt c	_	apocytochrome b, Cyt b of the Cyt bc 1 complex			Mt	LOC_Osm1g00480. X17064. D83009, X53710. P0C523, P0C524. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99352 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19890 (Nipponbare complete mitochondrial genome). JN861111: AER12986 (indica Hassawi complete mitochondrial genome). JF281153: AEZ03723 (indica IR6888 complete mitochondrial genome). cob-like in JN861111.	 Biochemical character		LOC_Osm1g00480				GO:0070469 - respiratory chain, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0009451 - RNA modification, GO:0009055 - electron carrier activity, GO:0005743 - mitochondrial inner membrane, GO:0022904 - respiratory electron transport chain, GO:0005739 - mitochondrion, GO:0016491 - oxidoreductase activity		
13736	_	atpB, AtpB, atpcf1, ATPbeta	_	ATP synthase beta subunit, ATPase beta subunit, ATP synthase CF1 beta subunit			Pt	D00432. P12085. LOC_Osp1g00410. M31464. X15901: CAA34003 (Japonica Group chloroplast genome). FJ908096-FJ908110 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00410				GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0005524 - ATP binding, GO:0042777 - plasma membrane ATP synthesis coupled proton transport, GO:0031977 - thylakoid lumen, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0009536 - plastid, GO:0008270 - zinc ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0010319 - stromule, GO:0010287 - plastoglobule, GO:0005618 - cell wall, GO:0009409 - response to cold, GO:0009817 - defense response to fungus, incompatible interaction		
13737	_	atpE	_	ATP synthase epsilon subunit, ATPase epsilon subunit, ATP synthase CF1 epsilon subunit, ATP synthase CF1 epsilon chain			Pt	D00432. P0C2Z2, P0C2Z3. M31464. X15901:CAA34002 (Japonica Group chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46126: Nip060 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62839 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00400				GO:0042777 - plasma membrane ATP synthesis coupled proton transport, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0005524 - ATP binding, GO:0046961 - proton-transporting ATPase activity, rotational mechanism		
13738	_		_	lectin, Agglutinin			4	M24504. Q0JF21. AU174453.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance	Os04g0173800	LOC_Os04g09390.1				GO:0008061 - chitin binding	TO:0000432 - temperature response trait	
13739	AGC13	G11A, OsAGC13	AGC PROTEIN KINASE 13	AGC protein kinase 13	AGC PROTEIN KINASE 13		6	J04556. A2YBX5. Q0DCT8.	 Biochemical character	Os06g0291600	LOC_Os06g18830.1				GO:0005524 - ATP binding, GO:0005730 - nucleolus, GO:0009507 - chloroplast, GO:0004674 - protein serine/threonine kinase activity, GO:0005737 - cytoplasm		
13740	_	coxI, COX1, cox1-1, cox1	_	cytochrome oxidase subunit I, cytochrome c oxidase subunit 1			Mt	LOC_Osm1g00550. M57903, X15990. P14578. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99388 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19897 (Nipponbare complete mitochondrial genome). JN861111: AER12979, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03713 (indica IR6888 complete mitochondrial genome). cox1-1 in JN861111 and JN861112.	 Biochemical character		LOC_Osm1g00550				GO:0070469 - respiratory chain, GO:0022900 - electron transport chain, GO:0005739 - mitochondrion, GO:0004129 - cytochrome-c oxidase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0005507 - copper ion binding, GO:0016021 - integral to membrane, GO:0009060 - aerobic respiration, GO:0005743 - mitochondrial inner membrane, GO:0005886 - plasma membrane, GO:0006119 - oxidative phosphorylation		
13741	_	H3R-11	_	H3 histone H3R-11			6	X13678. Q2RAD9. LOC_Os06g06460. Os06g0159500 (in Rap1 (build3), Rap3 (build5)).	 Other	Os06g0159450	LOC_Os06g06460.1				GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0003677 - DNA binding		
13742	_	H3R-21	_	H3 histone H3R-21			11	X13680. Q2RAD9. D15756.	 Other	Os11g0155900	LOC_Os11g05730.1				GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly		
13743	RPS14	rps14	RIBOSOMAL PROTEIN S14	chloroplast ribosomal protein S14, ribosomal protein S14	RIBOSOMAL PROTEIN S14		Pt	LOC_Osp1g00320. X13208. P0C467. P0C466. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46119: Nip048 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33994 (Japonica Group chloroplast genome). GU592207:ADD62832 (Japonica chloroplast comlete genome). JN861109 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00320				GO:0019843 - rRNA binding, GO:0006412 - translation, GO:0009507 - chloroplast, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0009536 - plastid		
13744	_	atpE.p	_	ATP synthase epsilon subunit pseudogene, chloroplast-encoded atpE pseudogene			Pt	M31465.									
13745	_	atpB.p	_	ATP synthase beta subunit pseudogene, chloroplast-encoded atpB pseudogene			Pt	M31465.									
13746	_	atpB.p	_	ATP synthase beta subunit pseudogene, mitochondria-encoded atpB pseudogene			Mt	M31466.									
13747	_	atpE.p	_	ATP synthase epsilon subunit pseudogene, mitochondria-encoded atpE pseudogene			Mt	M31466.									
13749	_		_	28S large subunit rRNA, 28S ribosomal RNA large subunit				M19228.									
13750	17S  rRNA	rrn17	17S RIBOSOMAL RNA	17S RIBOSOMAL RNA, 17S ribosomal RNA, 17S rRNA			2	X00755. M16845. X54194.									
13751	_	COII, coxII	_	cytochrome oxidase subunit II			Mt	X01088. P04373.	 Biochemical character						GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0016021 - integral to membrane, GO:0005743 - mitochondrial inner membrane, GO:0022900 - electron transport chain, GO:0070469 - respiratory chain, GO:0004129 - cytochrome-c oxidase activity, GO:0005507 - copper ion binding		
13752	_	RHL	_	Hal2-like protein, HAL2 Homolog			12	U33283. P0C5A3, Q2QWT4.	 Biochemical character	Os12g0183300	LOC_Os12g08280.1				GO:0006790 - sulfur metabolic process, GO:0043157 - response to cation stress, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0051512 - positive regulation of unidimensional cell growth, GO:0048573 - photoperiodism, flowering, GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity, GO:0046872 - metal ion binding, GO:0009570 - chloroplast stroma, GO:0019204 - nucleotide phosphatase activity, GO:0046854 - phosphoinositide phosphorylation, GO:0009738 - abscisic acid mediated signaling, GO:0010587 - miRNA catabolic process, GO:0009968 - negative regulation of signal transduction, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005634 - nucleus		
13753	_		_	stearoyl-acyl carrier protein desaturase, Stearoyl-ACP desaturase, stearyl-ACP desaturase			4	D38753. Q40731.	 Biochemical character	Os04g0379900	LOC_Os04g31070.1				GO:0046914 - transition metal ion binding, GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity, GO:0009507 - chloroplast, GO:0006633 - fatty acid biosynthetic process		
13754	_	S27a	_	ribosomal protein-linked ubiquitin, Ubiquitin/ribosomal protein S27a, ubiquitin fused to CEP80 gene			5	L31941. P51431. D15991. LOC_Os05g06770. a ubiquitin extension protein.		Os05g0160200	LOC_Os05g06770.1				GO:0003735 - structural constituent of ribosome, GO:0005634 - nucleus, GO:0005840 - ribosome, GO:0006412 - translation, GO:0046872 - metal ion binding		
13755	RPS8	S8	RIBOSOMAL PROTEIN S8	ribosomal protein S8	RIBOSOMAL PROTEIN S8		2	D38010. P49199.		Os02g0489400	LOC_Os02g28810.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0003735 - structural constituent of ribosome, GO:0006414 - translational elongation		
13756	CPD3	cbp3, R-CPD3, OsSCP6, SCP6	TYPE III CARBOXYPEPTIDASE	type III carboxypeptidase, type III CPD, R-CPD3, serine carboxypeptidase III, carboxypeptidase III, Serine carboxypeptidase 6	TYPE III CARBOXYPEPTIDASE		2	D10985. P37891. LOC_Os02g02320. OsSCP6 in Xu et al. 2015. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0114200	LOC_Os02g02320.1				GO:0006508 - proteolysis, GO:0004185 - serine-type carboxypeptidase activity		
13757	CPD1	cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65	TYPE I CARBOXYPEPTIDASE	type I carboxypeptidase, type I CPD, serine carboxypeptidase I, Serine carboxypeptidase 65	TYPE I CARBOXYPEPTIDASE		12	D17586. P37890. FJ810961-FJ811001 (Oryza glaberrima, Oryza barthii, Oryza nivara). DQ901833-DQ901859 (wild rice species). EF070046-EF070112 (O. sativa and wild rice species). JQ414564-JQ414607 (wild rice species). LOC_Os12g15470. SCPL (serine carboxypeptidase-like) protein. OsSCP65 in Xu et al. 2015. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os12g0257000	LOC_Os12g15470.1, LOC_Os12g15470.2, LOC_Os12g15470.3				GO:0006508 - proteolysis, GO:0004185 - serine-type carboxypeptidase activity		
13758	CPD3L	R-CPD3L, cbp31, OsSCP39, SCP39	TYPE III-LIKE CARBOXYPEPTIDASE	Type III-like carboxypeptidase, type III-like CPD, serine carboxypeptidase-like protein, Serine carboxypeptidase 39	TYPE III-LIKE CARBOXYPEPTIDASE		7	D17587. P52712. SCPL (serine carboxypeptidase-like) protein. LOC_Os07g29620. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os07g0479300	LOC_Os07g29620.1				GO:0005777 - peroxisome, GO:0004185 - serine-type carboxypeptidase activity, GO:0005773 - vacuole, GO:0005789 - endoplasmic reticulum membrane, GO:0006508 - proteolysis		
13760	P0A	YK704, Os60sP0, OsP0A	RIBOSOMAL PROTEIN P0A	Acidic Ribosomal Phosphoprotein P0, acidic ribosomal protein P0, 60S acidic ribosomal protein P0, ribosomal protein P0A	RIBOSOMAL PROTEIN P0A	osp0a	8	D26484. P41095. D21130. 	 Seed - Morphological traits - Embryo	Os08g0130500	LOC_Os08g03640.1				GO:0005507 - copper ion binding, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0010043 - response to zinc ion, GO:0022626 - cytosolic ribosome, GO:0006414 - translational elongation, GO:0009793 - embryonic development ending in seed dormancy, GO:0005634 - nucleus, GO:0042254 - ribosome biogenesis	TO:0000455 - seed set percent, TO:0000620 - embryo development trait	PO:0009039 - glume , PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0009037 - lemma , PO:0009038 - palea , PO:0009030 - carpel , PO:0009066 - anther , PO:0009072 - plant ovary 
13761	PRO13A.1	RP6, Prol-18, OsEnS-93, pro13a.1, OsPRO13A.1, PROLM25	13 KDA PROLAMIN A.1	prolamin, prolamin RP6, 13 kDa prolamin, endosperm-specific gene 93, Prolamin 25, 13 kDa prolamin A.1	13 KDA PROLAMIN A.1		7	X65064. P17048. X14392. EF122447, Os07g0206400 LOC_Os07g10570 (Yoon et al. 2012). PROLM25 in Huang et al. 2016, Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0206400	LOC_Os07g10570.1				GO:0033095 - aleurone grain, GO:0005773 - vacuole, GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum	TO:0000490 - protein composition related trait	PO:0009089 - endosperm 
13762	_	rig, RPS15, OsRPS15	_	Rat insulinoma gene, rat insulinoma gene homolog, ribosomal protein S15, 40S ribosomal protein S15, ribosomal protein small subunit 15			7	LOC_Os07g08660. D10962. P31674. AU031252. D16075.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os07g0184300	LOC_Os07g08660.1				GO:0042742 - defense response to bacterium, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000432 - temperature response trait, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
13763	EFA27	OsEFA27, OsClo5, Clo5, RD20, OsRD20	EF-HAND, ABSCISIC ACID RESPONSIVE 27-KDA PROTEIN	"\"EF-hand, abscisic acid responsive 27-kDa protein\". C18 hydroxylase, caleosin family protein 5"	EF-HAND, ABSCISIC ACID RESPONSIVE 27-KDA PROTEIN		4	D50556. A2XVG1, Q7FAX1. Ca+2-binding EF hand protein. GO:0071614: linoleic acid epoxygenase activity. GO:1990137: plant seed peroxidase activity. GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0511200	LOC_Os04g43200.2, LOC_Os04g43200.1				GO:0042542 - response to hydrogen peroxide, GO:0004392 - heme oxygenase (decyclizing) activity, GO:0009269 - response to desiccation, GO:0009409 - response to cold, GO:0009620 - response to fungus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0016165 - lipoxygenase activity, GO:0005811 - lipid particle, GO:0005783 - endoplasmic reticulum, GO:0005773 - vacuole, GO:0003714 - transcription corepressor activity, GO:0005543 - phospholipid binding, GO:0005634 - nucleus, GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane, GO:0010118 - stomatal movement, GO:0031408 - oxylipin biosynthetic process, GO:0031969 - chloroplast membrane, GO:0034389 - lipid particle organization, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress	
13764	_	OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4	_	Early Embryogenesis-Specific Enolase 1, Enolase 1, enolase 7, enolase 4			10	U09450. Q42971. D15335. LOC_Os10g08550. OsEno4 (AK073662) and OsEno7 (U09450) in Fukayama et al. 2014.	 Biochemical character	Os10g0167300	LOC_Os10g08550.1, LOC_Os10g08550.3, LOC_Os10g08550.5				GO:0006096 - glycolysis, GO:0000015 - phosphopyruvate hydratase complex, GO:0000287 - magnesium ion binding, GO:0004634 - phosphopyruvate hydratase activity, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
13765	OLE16	ole16, OsEnS-72, OsOLE16	16 KDA OLEOSIN	16 kDa oleosin, endosperm-specific gene 72	16 KDA OLEOSIN		4	U43930. Q42980.	 Tolerance and resistance - Stress tolerance	Os04g0546500	LOC_Os04g46200.1				GO:0019915 - lipid storage, GO:0009628 - response to abiotic stimulus, GO:0016021 - integral to membrane, GO:0012511 - monolayer-surrounded lipid storage body	TO:0000168 - abiotic stress trait	
13766	OLE18	ole18, OsOLE18	18 KDA OLEOSIN	18 kDa oleosin, Oleosin KD18	18 KDA OLEOSIN		3	U43931. Q10EK7. AY427563 (promoter). D15609.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Embryo	Os03g0699000	LOC_Os03g49190.1				GO:0009628 - response to abiotic stimulus, GO:0012511 - monolayer-surrounded lipid storage body, GO:0010344 - seed oilbody biogenesis, GO:0050826 - response to freezing, GO:0016021 - integral to membrane, GO:0019915 - lipid storage	TO:0000168 - abiotic stress trait	
13768	_	OsCycC_1, CycC_1	_	C-type cyclin, cyclin C			9	D86925. P93411. D15406. one of the 55 MED (Mediator) subunits. LOC_Os09g32680.	 Biochemical character	Os09g0504400	LOC_Os09g32680.1, LOC_Os09g32680.2, LOC_Os09g32680.3, LOC_Os09g32680.4				GO:0007049 - cell cycle, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0051301 - cell division, GO:0016591 - DNA-directed RNA polymerase II, holoenzyme		
13769	RPS11	rps11, s11-1	RIBOSOMAL PROTEIN S11	ribosomal protein S11, mitochondrial ribosomal protein S11	RIBOSOMAL PROTEIN S11		3	D85382.	 Biochemical character	Os03g0385900 	LOC_Os03g26860.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
13770	RPS11.P	rps11.p, pseudo-rps11	RIBOSOMAL PROTEIN S11 PSEUDOGENE	ribosomal protein S11 pseudogene	RIBOSOMAL PROTEIN S11 PSEUDOGENE		Mt	LOC_Osm1g00410. D85128. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400): rps11 and JF281153: rps11 are in conflict. 			LOC_Osm1g00410						
13771	_	coxVb, COX5b	_	cytochrome c oxidase subunit Vb, cytochrome c oxidase subunit 5b			1	D85381.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0612200	LOC_Os01g42650.1				GO:0005740 - mitochondrial envelope, GO:0008270 - zinc ion binding, GO:0050897 - cobalt ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0004129 - cytochrome-c oxidase activity, GO:0005739 - mitochondrion	TO:0000432 - temperature response trait	
13772	_	s11-2	_	ribosomal protein S11 homolog 2				D85195. similar to mitochondrial ribosomal protein s11 gene.	 Biochemical character								
13773	_	a1	_	NADPH-dependent reductase A1			1	U87451. U70541 (AAB58474). a homolog of maize A1 gene.	 Biochemical character						GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0044237 - cellular metabolic process		
13774	_	OsCa-atpase	_	GA-responsive Ca2+-ATPase				U82966.	 Biochemical character								
13775	_	OsGL1-3	_	glossy1 homolog, Glossy1-homologous gene 3			6	U57338. LOC_Os06g44300. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0653000	LOC_Os06g44300.1				GO:0005506 - iron ion binding, GO:0010025 - wax biosynthetic process, GO:0006970 - response to osmotic stress, GO:0048235 - pollen sperm cell differentiation, GO:0016491 - oxidoreductase activity, GO:0009414 - response to water deprivation, GO:0006723 - cuticle hydrocarbon biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
13776	_		_	histidyl tRNA synthetase, Histidyl-tRNA Synthetase, Histidine--tRNA ligase, Histidine:tRNA ligase			5	Z85984. P93422. D16062.	 Biochemical character	Os05g0150900	LOC_Os05g05840.1				GO:0006427 - histidyl-tRNA aminoacylation, GO:0004821 - histidine-tRNA ligase activity, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0016841 - ammonia-lyase activity, GO:0048481 - ovule development		
13777	_	dad-1, DAD-1, DAD1	_	defender against apoptotic death 1			4	A Putative Programmed Cell Death Suppressor. D89726, D89727. Q0JDK9.	 Biochemical character	Os04g0397000	LOC_Os04g32550.1				GO:0008250 - oligosaccharyltransferase complex, GO:0006915 - apoptosis, GO:0016021 - integral to membrane, GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity, GO:0006486 - protein amino acid glycosylation		
13778	DXS1	CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1	CLA1 transketolase-like protein, 1-Deoxy-D-xylulose 5-phosphate synthase 1, transketolase 1	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1		5	Transketolase-Like Protein Homologous to the Arabidopsis CLA1. AF024512. O22567. GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Coloration - Others	Os05g0408900	LOC_Os05g33840.1				GO:0016114 - terpenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process, GO:0009228 - thiamin biosynthetic process, GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity, GO:0009570 - chloroplast stroma, GO:0008299 - isoprenoid biosynthetic process, GO:0009416 - response to light stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0005829 - cytosol, GO:0046872 - metal ion binding	TO:0000289 - carotene content, TO:0000075 - light sensitivity	
13779	_	r1	_	R-like gene 1, resistance gene 1			5	AF032688. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13780	_	r2	_	R-like gene 2, resistance gene 2			11	AF032689. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13781	_	r4	_	R-like gene 4, resistance gene 4				AF032691. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13782	_	r5	_	R-like gene 5, resistance gene 5			11	AF032692. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13783	_	r6	_	R-like gene 6, resistance gene 6				AF032693. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13784	_	r7	_	R-like gene 7, resistance gene 7			7	AF032694. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13785	_	r8	_	R-like gene 8, resistance gene 8				AF032695. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13786	_	r9	_	R-like gene 9, resistance gene 9			3	AF032696. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13787	_	r10	_	R-like gene 10, resistance gene 10			11	AF032697. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13788	_	r11	_	R-like gene 11, resistance gene 11			11	AF032698. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13789	_	r12	_	R-like gene 12, resistance gene 12			11	AF032699. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
13790	_	r13	_	R-like gene 13, resistance gene 13			5	AF032700. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13791	_	r14	_	R-like gene 14, resistance gene 14			9	AF032701. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13792	_	r15	_	R-like gene 15, resistance gene 15			9	AF032702. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
13793	_	r16	_	R-like gene 16, resistance gene 16			9	AF032703. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
13794	_	r3	_	R-like gene 3, resistance gene 3			1	AF032690. NBS-LRR type resistance protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
13795	_	C00481	_				11	class III chitinase. D55708.	 Biochemical character	Os11g0701200 	LOC_Os11g47530.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
13796	_	C10122	_				8	class III chitinase. D55709.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0518900	LOC_Os08g40690.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity		
13797	_	C10150	_				11	class III chitinase. D55710.	 Biochemical character	Os11g0701400	LOC_Os11g47550.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity		
13798	_	C10501	_				1	class III chitinase. D55711. D22210, C96640.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0860500	LOC_Os01g64110.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity	TO:0000432 - temperature response trait	
13799	_	C10728, OsChib3a, Chib3a, OsPR31, PR31, PR8, OsPR8	_	pathogenesis-related 31			1	class III chitinase. D55713. pathogenesis-related (PR) gene. PR8/chitinase class III. BF889433. PR8 in Dong et al. 2021, Wang et al. 2021.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0660200	LOC_Os01g47070.1				GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity	TO:0000074 - blast disease	
13800	_	C10923	_				11	class III chitinase. D55714.	 Biochemical character	Os11g0700900	LOC_Os11g47500.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity		
13801	_	r-Os1	_	Romani-Os1, Gypsy-like retrotransposon Romani-Os1				AJ002611, AJ002612.									
13802	SMT1-1	Ossmt1-1, OsSMT1-1	STEROL METHYLTRANSFERASE 1-1 	sterol methyltransferase 1-1, sterol-C24-methyltransferase 1-1	STEROL METHYLTRANSFERASE 1-1 		7	AF042332, D24567. Q6ZIX2. GO:1901305: negative regulation of spermidine biosynthetic process.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0206700	LOC_Os07g10600.1, LOC_Os07g10600.2				GO:0009793 - embryonic development ending in seed dormancy, GO:0003838 - sterol 24-C-methyltransferase activity, GO:0009611 - response to wounding, GO:0005773 - vacuole, GO:0005783 - endoplasmic reticulum, GO:0042398 - cellular amino acid derivative biosynthetic process, GO:0006084 - acetyl-CoA metabolic process, GO:0019745 - pentacyclic triterpenoid biosynthetic process, GO:0006598 - polyamine catabolic process, GO:0009506 - plasmodesma, GO:0016132 - brassinosteroid biosynthetic process, GO:0016126 - sterol biosynthetic process, GO:0009805 - coumarin biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0006597 - spermine biosynthetic process, GO:0009414 - response to water deprivation	TO:0000207 - plant height, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000276 - drought tolerance, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000136 - relative water content	
13803	_	Ossmt2-1	_	sterol methyltransferase 2-1			3	AF042333, C28584. O82427.	 Biochemical character	Os03g0136200	LOC_Os03g04340.1				GO:0030797 - 24-methylenesterol C-methyltransferase activity, GO:0032876 - negative regulation of DNA endoreduplication, GO:0016126 - sterol biosynthetic process, GO:0016021 - integral to membrane, GO:0009825 - multidimensional cell growth, GO:0010051 - xylem and phloem pattern formation		
13804	SDI2	OsSDI2	SULFUR DEFICIENCY INDUCED 2	MS5 homolog, sulfur deficiency induced 2			5	AF031609, D39857.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os05g0506000	LOC_Os05g43040.1				GO:0010438 - cellular response to sulfur starvation, GO:0006792 - regulation of sulfur utilization, GO:0042594 - response to starvation	TO:0000007 - sulfur sensitivity	
13805	_	RPE	_	D-ribulose-5-phosphate 3-epimerase, chl-RPEase, chloroplast RPEase, chloroplast D-Ribulose-5-phosphate 3-Epimerase			3	D39200, D48105, AF047444. Q9ZTP5.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0169100	LOC_Os03g07300.1				GO:0019253 - reductive pentose-phosphate cycle, GO:0009409 - response to cold, GO:0004750 - ribulose-phosphate 3-epimerase activity, GO:0006098 - pentose-phosphate shunt, GO:0010319 - stromule, GO:0009941 - chloroplast envelope, GO:0048046 - apoplast, GO:0009535 - chloroplast thylakoid membrane, GO:0009793 - embryonic development ending in seed dormancy, GO:0042742 - defense response to bacterium, GO:0009570 - chloroplast stroma, GO:0046872 - metal ion binding, GO:0009624 - response to nematode		
13808	_	OsDD3	_	type 1a plasma membrane receptor DD3				AF069773.	 Tolerance and resistance - Stress tolerance								
13809	_	Ros1	_	retrotransposon of Oryza sativa 1				Ty1-copia group retrotransposon. AB017978.	 Other								
13810	_	Ros2	_	retrotransposon of Oryza sativa 2				Ty1-copia group retrotransposon. AB017979.	 Other								
13811	_	Ros3	_	retrotransposon of Oryza sativa 3				Ty1-copia group retrotransposon. AB017980.	 Other								
13812	_	Ros4	_	retrotransposon of Oryza sativa 4				Ty1-copia group retrotransposon. AB017981.	 Other								
13813	_	Ros5	_	retrotransposon of Oryza sativa 5				Ty1-copia group retrotransposon. AB017982.	 Other								
13814	_	Ros6	_	retrotransposon of Oryza sativa 6				Ty1-copia group retrotransposon. AB017983.	 Other								
13815	_	Ros7	_	retrotransposon of Oryza sativa 7				Ty1-copia group retrotransposon. AB017984.	 Other								
13816	_	Ros8	_	retrotransposon of Oryza sativa 8				Ty1-copia group retrotransposon. AB017985.	 Other								
13817	_	Ros9	_	retrotransposon of Oryza sativa 9				Ty1-copia group retrotransposon. AB017986.	 Other								
13818	_	Ros10	_	retrotransposon of Oryza sativa 10				Ty1-copia group retrotransposon. AB017987.	 Other								
13819	_	Ros11	_	retrotransposon of Oryza sativa 11				Ty1-copia group retrotransposon. AB017988.	 Other								
13820	_	Ros12	_	retrotransposon of Oryza sativa 12				Ty1-copia group retrotransposon. AB017989.	 Other								
13821	_	Ros13	_	retrotransposon of Oryza sativa 13				Ty1-copia group retrotransposon. AB017990.	 Other								
13822	_	Ros14	_	retrotransposon of Oryza sativa 14				Ty1-copia group retrotransposon. AB017991.	 Other								
13823	_	Ros15	_	retrotransposon of Oryza sativa 15				Ty1-copia group retrotransposon. AB017992.	 Other								
13824	_	Ros16	_	retrotransposon of Oryza sativa 16				Ty1-copia group retrotransposon. AB017993.	 Other								
13825	_	Ros17	_	retrotransposon of Oryza sativa 17				Ty1-copia group retrotransposon. AB017994.	 Other								
13826	_	Ros18	_	retrotransposon of Oryza sativa 18				Ty1-copia group retrotransposon. AB017995.	 Other								
13827	_	Ros19	_	retrotransposon of Oryza sativa 19				Ty1-copia group retrotransposon. AB017996.	 Other								
13828	_	Ros20	_	retrotransposon of Oryza sativa 20				Ty1-copia group retrotransposon. AB017997.	 Other								
13829	_	Ros21	_	retrotransposon of Oryza sativa 21				Ty1-copia group retrotransposon. AB017998.	 Other								
13830	_	Ros22	_	retrotransposon of Oryza sativa 22				Ty1-copia group retrotransposon. AB017999.	 Other								
13831	_	Ros23	_	retrotransposon of Oryza sativa 23				Ty1-copia group retrotransposon. AB018000.	 Other								
13832	_	OS-CER1, CER1	_					an Arabidopsis CER1 homolog. AF143746. GO:0071771:aldehyde decarbonylase activity.	 Biochemical character						GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0042335 - cuticle development, GO:0046185 - aldehyde catabolic process, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane		
13833	HAM1	OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9, OsGRAS8, GRAS8, SCL6-II, OsSCL6-II	HAIRY MERISTEM 1	SCARECROW-LIKE 1, hairy meristem 1, GRAS protein 9, SCARECROW-LIKE6-II	GRAS PROTEIN 9		2	OsGRAS8 in Dutta et al. 2021. AF067401. GRAS (GAI-RGA-SCR) plant-specific transcription factor. Scarecrow transcription factor family protein.	 Other,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0662700	LOC_Os02g44360.1				GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0006021 - vegetative to reproductive phase transition trait, TO:0006020 - shoot apical meristem development, TO:0000276 - drought tolerance	PO:0020148 - shoot apical meristem 
13834	_	TK	_	thymidine kinase			3	AF066050. O81263.	 Biochemical character	Os03g0113100	LOC_Os03g02200.1, LOC_Os03g02200.2, LOC_Os03g02200.3				GO:0006260 - DNA replication, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0004797 - thymidine kinase activity		
13835	8TAK1	Os8Tak1, OsRLK21, RLK21	TAK RECEPTOR-LIKE KINASE 1	Tak Receptor-Like Kinase 1, Receptor-like Kinase 21	TAK RECEPTOR-LIKE KINASE 1		1	AF100765.	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os01g0115800	LOC_Os01g02590.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response	PO:0025034 - leaf 
13836	8TAK2	Os8Tak2, YK21, OsRLCK12, RLCK12, RLK20, OsRLK20	TAK RECEPTOR-LIKE KINASE 2	Tak Receptor-Like Kinase 2, Receptor-like Cytoplasmic Kinase 12, Receptor-like Kinase 20	TAK RECEPTOR-LIKE KINASE 2		1	AF100766. AF230510.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic	Os01g0115750 	LOC_Os01g02580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding	TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf 
13837	_	Os8Tak3	_	Tak Receptor-Like Kinase 3			1	AF100767.		Os01g0116000 	LOC_Os01g02610.1				GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
13838	_	Os8Lrk, Os8Lrk.p	_	Lrk Receptor-Like Kinase pseudogene			1	AF100764. Os8Lrk gene is located between Os01g0115800 and Os01g0116000.									
13839	_	panC, PS	_	pantothenate synthetase			3	Y10253. O24210.	 Biochemical character	Os03g0851800	LOC_Os03g63490.1				GO:0004592 - pantoate-beta-alanine ligase activity, GO:0009793 - embryonic development ending in seed dormancy, GO:0015940 - pantothenate biosynthetic process, GO:0005829 - cytosol, GO:0005524 - ATP binding		
13840	_	rpl5, rpl5-1	_	ribosomal protein L5, ribosomal protein L7			Mt	LOC_Osm1g00570. AB017426. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99340 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19898 (Nipponbare complete mitochondrial genome). JN861111: AER13005, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03712 (indica IR6888 complete mitochondrial genome). rpl5-1 in JN861111 and JN861112.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00570				GO:0005739 - mitochondrion, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
13841	MTI3B	MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b	METALLOTHIONEIN 3B				5	LOC_Os05g11320. Metallothionein-like protein type 3. AF009959. A2Y1D7, A3B0Y1. OsMT3b in Wong et al. 2004. OsMT-I-3b in Zhou et al. 2006.	 Biochemical character	Os05g0202800	LOC_Os05g11320.1				GO:0006612 - protein targeting to membrane, GO:0009651 - response to salt stress, GO:0009926 - auxin polar transport, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0010015 - root morphogenesis, GO:0006833 - water transport, GO:0009750 - response to fructose stimulus, GO:0046686 - response to cadmium ion, GO:0040007 - growth, GO:0010363 - regulation of plant-type hypersensitive response, GO:0005507 - copper ion binding, GO:0006878 - cellular copper ion homeostasis, GO:0007389 - pattern specification process, GO:0008361 - regulation of cell size		
13842	_	COX5c	_	cytochrome c oxidase subunit 5c			12	AB027123. Q9SXX7.	 Biochemical character	Os12g0561000	LOC_Os12g37419.1				GO:0005746 - mitochondrial respiratory chain, GO:0016021 - integral to membrane		
13843	_	GAG-POL, orf1	_					AB030283. gag-pol region (gag, pro, rt,rh, int) of RIRE2.	 Other								
13844	_	GAG-POL, orf2	_					AB030283. gag-pol region (gag, pro, rt,rh, int) of RIRE2.	 Other								
13845	_	orf3, orf3'	_					AB030283. orf3 of RIRE2.	 Other								
13846	_	orf4, orf4'	_					AB030283. orf4 of RIRE2.	 Other								
13847	_	orf5, orf5'	_					AB030283. orf5 of RIRE2.	 Other								
13848	_	matK, ORF542	_	maturase K, maturase			Pt	LOC_Osp1g00120. AF148650-AF148674 (O.stiva and other wild rice species). HE574131 (Oryza meridionalis), HE586098 (Oryza coarctata). FJ908261-FJ908266 (wild rice species). P0C382, P0C383. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46105 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62818 (Japonica chloroplast comlete genome). EU434286, EU434287 (O. rufipogon and O. sativa). X15901: CAA34008 (Japonica Group chloroplast genome). ORF within trnK intron. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). HG794000.  AF489915 (Oryza malampuzhaensis).			LOC_Osp1g00120				GO:0009451 - RNA modification, GO:0003723 - RNA binding, GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0009536 - plastid, GO:0008033 - tRNA processing, GO:0009507 - chloroplast		
13849	CRO1	OsCRO1, CRT, CRT-1, OsCRT-1, OsCRT1, CRT1	CALRETICULIN 1	calreticulin 1, calreticulin	CALRETICULIN 1		7	AB021259. Q9SLY8. a major Ca2+-sequestering protein. a calcium signaling component. D15762.	 Tolerance and resistance - Stress tolerance	Os07g0246200	LOC_Os07g14270.1, LOC_Os07g14270.2, LOC_Os07g14270.3				GO:0005509 - calcium ion binding, GO:0051082 - unfolded protein binding, GO:0009411 - response to UV, GO:0005788 - endoplasmic reticulum lumen, GO:0006457 - protein folding, GO:0007275 - multicellular organismal development	TO:0000160 - UV light sensitivity, TO:0000432 - temperature response trait	
13850	_	UMPS1	_	UMP synthase 1			1	AF210322, AF210323, AF210324. Q9LDN2.	 Biochemical character	Os01g0951200	LOC_Os01g72240.1				GO:0004588 - orotate phosphoribosyltransferase activity, GO:0004590 - orotidine-5'-phosphate decarboxylase activity, GO:0046686 - response to cadmium ion, GO:0016036 - cellular response to phosphate starvation, GO:0006207 - 'de novo' pyrimidine base biosynthetic process		
13851	_	UMPS2	_	UMP synthase 2			1	AF210325. Q8RZA1. GO:0044205: 'de novo' UMP biosynthetic process. 	 Biochemical character	Os01g0951400 	LOC_Os01g72250.1				GO:0004588 - orotate phosphoribosyltransferase activity, GO:0006207 - 'de novo' pyrimidine base biosynthetic process, GO:0004590 - orotidine-5'-phosphate decarboxylase activity		
13852	_	PAKRP1, OsKRP1, SIP18	_	phragmoplast-associated kinesin-related protein 1, PAKRP1 homolog, SKIP interacting protein 18, SKIPa-interacting protein 18, SKIPa-interacting protein 18			4	AF210816. EU368708. LOC_Os04g28260.	 Seed	Os04g0350300 	LOC_Os04g28260.1				GO:0008574 - plus-end-directed microtubule motor activity, GO:0007018 - microtubule-based movement, GO:0005524 - ATP binding, GO:0005856 - cytoskeleton, GO:0055046 - microgametogenesis, GO:0005871 - kinesin complex, GO:0000914 - phragmoplast formation, GO:0005874 - microtubule, GO:0009524 - phragmoplast, GO:0007049 - cell cycle	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
13853	TNR4	Tnr4	TRANSPOSABLE DNA ELEMENT 4	transposable DNA element 4, Transposal element-4, transposon Tnr4				AB033542.	 Other						GO:0032196 - transposition		
13854	TNR5	Tnr5	TRANSPOSABLE DNA ELEMENT 5	transposable DNA element 5, Transposal element-5, transposon Tnr5				AB033543.	 Other						GO:0032196 - transposition		
13855	TNR11	Tnr11	TRANSPOSABLE DNA ELEMENT 11	transposable DNA element 11, Transposal element-11, transposon Tnr11				AB033544.	 Other						GO:0032196 - transposition		
13856	TNR12	Tnr12	TRANSPOSABLE DNA ELEMENT 12	transposable DNA element 12, Transposal element-12, transposon Tnr12				AB033545.	 Other						GO:0032196 - transposition		
13857	TNR13	Tnr13	TRANSPOSABLE DNA ELEMENT 13	transposable DNA element 13, Transposal element-13, transposon Tnr13				AB033546.	 Other						GO:0032196 - transposition		
13858	_	RIRE9	GYPSY TYPE RETROTRANSPOSON	rice gypsy type retrotransposon				AB033547.	 Other						GO:0032196 - transposition		
13859	RSP1	OsRSP1, OsSub5, SUB5, OsSub6, SUB6	RICE SERINE PROTEASE 1	subtilase, subtilisin-like serine protease 1, Subtilisin 5, SUBTILISIN 5, Subtilisin 6, SUBTILISIN 6	RICE SERINE PROTEASE 1		1	AF200467. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml. OsSUB5 in Zheng et al. 2022.	 Biochemical character	Os01g0795000	LOC_Os01g58240.1				GO:0043086 - negative regulation of catalytic activity, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		PO:0009006 - shoot system 
13860	_	MetRS, MRS	_	methionyl-tRNA synthetase			6	AF040700. Q9ZTS1.	 Biochemical character	Os06g0508700	LOC_Os06g31210.1				GO:0046686 - response to cadmium ion, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0004825 - methionine-tRNA ligase activity, GO:0006431 - methionyl-tRNA aminoacylation, GO:0000049 - tRNA binding		
13861	SAMDC2	SamDC2, AdoMetDC2, OsSAMDC2	S-ADENOSYLMETHIONINE DECARBOXYLASE 2	S-adenosylmethionine decarboxylase 2	S-ADENOSYLMETHIONINE DECARBOXYLASE 2		2	AJ251899, AJ252214. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0611200 	LOC_Os02g39795.1, LOC_Os02g39790.2, LOC_Os02g39790.1				GO:0009408 - response to heat, GO:0006596 - polyamine biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0009651 - response to salt stress, GO:0006597 - spermine biosynthetic process, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0006557 - S-adenosylmethioninamine biosynthetic process	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
13862	HPPD	OsHPPD, Osl30, l30	4-HYDROXYPHENYLPYRUVATE DIOXYGENASE	4-hydroxyphenylpyruvate dioxygenase, p-hydroxyphenylpyruvate dioxygenase	4-HYDROXYPHENYLPYRUVATE DIOXYGENASE		2	AF251065. vitamin E biosynthetic enzyme.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf	Os02g0168100 	LOC_Os02g07160.1				GO:0010189 - vitamin E biosynthetic process, GO:0010236 - plastoquinone biosynthetic process, GO:0005739 - mitochondrion, GO:0009635 - response to herbicide, GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0009072 - aromatic amino acid family metabolic process, GO:0006559 - L-phenylalanine catabolic process, GO:0016117 - carotenoid biosynthetic process, GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0010150 - leaf senescence, GO:0006572 - tyrosine catabolic process	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0002657 - oxidative stress, TO:0000058 - herbicide sensitivity	PO:0001054 - 4 leaf senescence stage 
13863	BCKDH	OsBCKDH	BRANCHED-CHAIN KETO ACID DEHYDROGENASE	branched chain alpha-keto acid dehydrogenase E1-alpha subunit, senescence-associated dehydrogenase, branched-chain keto acid dehydrogenase	BRANCHED-CHAIN KETO ACID DEHYDROGENASE		12	AF251067.	 Biochemical character	Os12g0183100	LOC_Os12g08260.7, LOC_Os12g08260.6, LOC_Os12g08260.5, LOC_Os12g08260.4, LOC_Os12g08260.1, LOC_Os12g08260.2, LOC_Os12g08260.3				GO:0003863 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, GO:0009083 - branched chain family amino acid catabolic process, GO:0005947 - mitochondrial alpha-ketoglutarate dehydrogenase complex, GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor		
13864	AGA1	Osh69, h69, OsAGA1, OsRS6, RS6	ALKALINE ALPHA-GALACTOSIDASE 1	alkaline alpha-galactosidase, alkaline alpha-galactosidase 1, raffinose synthase 6	ALKALINE ALPHA-GALACTOSIDASE 1		8	AF251068. Glycosyltransferase. raffinose synthase family protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os08g0495800	LOC_Os08g38710.1				GO:0005764 - lysosome, GO:0009753 - response to jasmonic acid stimulus, GO:0010150 - leaf senescence, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006970 - response to osmotic stress, GO:0005975 - carbohydrate metabolic process	TO:0002649 - pesticide sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0009047 - stem 
13865	AMTR1	Osh36, OsH36, H36, OsAMTR1	AMINOTRANSFERASE 1	alanine:glyoxylate aminotransferase-like protein, aminotransferase 1	AMINOTRANSFERASE 1		5	AF251070. GO:1901002: positive regulation of response to salt stress. GO:2000070: regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Biochemical character	Os05g0475400	LOC_Os05g39770.2, LOC_Os05g39770.1				GO:0008152 - metabolic process, GO:0008483 - transaminase activity, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0080134 - regulation of response to stress, GO:0010150 - leaf senescence, GO:0009737 - response to abscisic acid stimulus, GO:0030170 - pyridoxal phosphate binding, GO:0009749 - response to glucose stimulus, GO:0009646 - response to absence of light, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0000249 - leaf senescence, TO:0002657 - oxidative stress	PO:0001054 - 4 leaf senescence stage 
13866	_		_	seed protein B32E			11	AF251071.		Os11g0199700	LOC_Os11g09329.1, LOC_Os11g09329.2, LOC_Os11g09350.1				GO:0005622 - intracellular, GO:0006886 - intracellular protein transport		
13867	GABA-T	Osl2, l2, OsGABA-T	GAMMA-AMINOBUTYRIC ACID TRANSAMINASE 	aminotransferase, pyruvate-dependent GABA transaminase, gamma-aminobutyric acid transaminase	GAMMA-AMINOBUTYRIC ACID TRANSAMINASE 		4	AF251073. Q7XN11. AF297651. OsGABA-T paralogue. GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Leaf	Os04g0614600	LOC_Os04g52450.2, LOC_Os04g52450.1				GO:0002238 - response to molecule of fungal origin, GO:0009749 - response to glucose stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0010939 - regulation of necrotic cell death, GO:0030170 - pyridoxal phosphate binding, GO:0005739 - mitochondrion, GO:0010150 - leaf senescence, GO:0008152 - metabolic process, GO:0008483 - transaminase activity	TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
13868	MCCA	OsL55, OsMCCA	METHYLCROTONYL-COA CARBOXYLASE A	3-methylcrotonyl CoA carboxylase biotin-containing subunit, 3-METHYLCROTONYL-COA CARBOXYLASE A	METHYLCROTONYL-COA CARBOXYLASE A		12	AF251074. Q2QMG2.	 Biochemical character	Os12g0605800	LOC_Os12g41250.1				GO:0004485 - methylcrotonoyl-CoA carboxylase activity, GO:0004075 - biotin carboxylase activity, GO:0005759 - mitochondrial matrix, GO:0005524 - ATP binding, GO:0050897 - cobalt ion binding, GO:0022626 - cytosolic ribosome, GO:0009750 - response to fructose stimulus, GO:0009744 - response to sucrose stimulus, GO:0006552 - leucine catabolic process		
13869	KAT1	OsI57, I57, OsKAT1, OsACAA1, ACAA1	3-KETOACYL-COA THIOLASE 1	3-ketoacyl-CoA thiolase, 3-ketoacyl-CoA thiolase-like protein, Acetyl-CoA acyltransferase 1	3-KETOACYL-COA THIOLASE 1		2	AF251076. AU056550. 	 Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0817700	LOC_Os02g57260.1				GO:0010150 - leaf senescence, GO:0003988 - acetyl-CoA C-acyltransferase activity, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0009737 - response to abscisic acid stimulus, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0005730 - nucleolus, GO:0005739 - mitochondrion, GO:0002213 - defense response to insect, GO:0005777 - peroxisome, GO:0010111 - glyoxysome organization	TO:0000615 - abscisic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000249 - leaf senescence, TO:0000432 - temperature response trait	PO:0001054 - 4 leaf senescence stage 
13870	_	OsUXS2, UXS-2, Osl381, l381	_	dTDP-glucose 4-6-dehydratase-like protein, UDP-xylose synthase 2, UDP-glucuronic acid decarboxylase 2			1	AF251077. AB167396.	 Biochemical character,  Vegetative organ - Leaf	Os01g0315800	LOC_Os01g21320.1				GO:0010150 - leaf senescence, GO:0048316 - seed development, GO:0048040 - UDP-glucuronate decarboxylase activity, GO:0042732 - D-xylose metabolic process, GO:0044237 - cellular metabolic process, GO:0050662 - coenzyme binding, GO:0010416 - arabinoxylan metabolic process, GO:0000139 - Golgi membrane, GO:0005773 - vacuole, GO:0005886 - plasma membrane	TO:0000249 - leaf senescence, TO:0000653 - seed development trait	PO:0001054 - 4 leaf senescence stage 
13872	AIM1	MFP, OsAIM, OsCHD, CHD	ABNORMAL INFLORESCENCE MERISTEM1	multifunctional protein, peroxisomal multifunctional protein, ABNORMAL INFLORESCENCE MERISTEM 1, cinnamoyl-CoA hydratase-dehydrogenase		aim1	2	LOC_Os02g17390. AF442962. Q8W1L6. a RNA- and Microtubule-binding Protein. a homolog of Arabidopsis AIM1. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Vegetative organ - Root	Os02g0274100	LOC_Os02g17390.1				GO:0004165 - dodecenoyl-CoA delta-isomerase activity, GO:0003729 - mRNA binding, GO:0009507 - chloroplast, GO:0004300 - enoyl-CoA hydratase activity, GO:0050662 - coenzyme binding, GO:0008692 - 3-hydroxybutyryl-CoA epimerase activity, GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity, GO:0018812 - 3-hydroxyacyl-CoA dehydratase activity, GO:0009506 - plasmodesma, GO:0000166 - nucleotide binding, GO:0005777 - peroxisome, GO:0005874 - microtubule, GO:0009697 - salicylic acid biosynthetic process, GO:0048364 - root development, GO:0005618 - cell wall, GO:0009845 - seed germination, GO:0006635 - fatty acid beta-oxidation, GO:0009908 - flower development, GO:0009695 - jasmonic acid biosynthetic process, GO:0008017 - microtubule binding	TO:0000656 - root development trait, TO:0000605 - hydrogen peroxide content, TO:0000227 - root length	PO:0001031 - 4 root elongation stage 
13873	_	HLL	_	HUELLENLOS, HUELLENLOS-like protein			12	AF402991.	 Other	Os12g0616200	LOC_Os12g42180.1				GO:0015934 - large ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
13874	MAR1	Osmar1	TC1/MARINER TRANSPOSABLE ELEMENT	Mariner 1, mariner-like element 1, Tc1/Mariner-like element			11	AF172282: 227526-232784.	 Other						GO:0032196 - transposition		
13875	MAR2B	Osmar2b	TC1/MARINER TRANSPOSABLE ELEMENT 2B	Mariner 2b, mariner-like element 2b, Tc1/Mariner-like element 2b			1	AP003294: 104503-109697.	 Other						GO:0032196 - transposition		
13876	MAR3	Osmar3	TC1/MARINER TRANSPOSABLE ELEMENT 3	Mariner 3, mariner-like element 3, Tc1/Mariner-like element 3			4	AL442115: 76624-78029.	 Other						GO:0032196 - transposition		
13877	MAR4	Osmar4	TC1/MARINER TRANSPOSABLE ELEMENT 4	Mariner 4, mariner-like element 4, Tc1/Mariner-like element 4			6	AP003574: 44316-49338.	 Other						GO:0032196 - transposition		
13878	_	Gag-Pol	_	Gag-Pol of the Athila group element			1	AP003054: 36238-53391.									
13879	_		_	retrovirus-like element reverse transcriptase, Athila group reverse transcriptase				AF378016.	 Other						GO:0003723 - RNA binding, GO:0006278 - RNA-dependent DNA replication, GO:0003964 - RNA-directed DNA polymerase activity		
13880	CSLA2	OsCslA2, OsCSLA2	CELLULOSE SYNTHASE LIKE A2		CELLULOSE SYNTHASE LIKE A2		10	BK000092, AF435640, D22177. Q7PC67. LOC_Os10g26630.	 Biochemical character	Os10g0406400	LOC_Os10g26630.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane		
13881	CSLA3	OsCslA3, OsCSLA3	CELLULOSE SYNTHASE LIKE A3		CELLULOSE SYNTHASE LIKE A3		6	BK000081. Q67X45. a target of osa-miR1882 (miR1882a, miR1882b, miR1882c, miR1882d, miR1882e-5p, miR1882f, miR1882g, miR1882h).	 Biochemical character	Os06g0230100	LOC_Os06g12460.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
13882	CSLA4	OsCslA4, OsCSLA4	CELLULOSE SYNTHASE LIKE A4		CELLULOSE SYNTHASE LIKE A4		3	BK000082. Q8S7W0. LOC_Os03g07350.	 Biochemical character	Os03g0169500	LOC_Os03g07350.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane		
13883	CSLA5	OsCslA5, OsCSLA5	CELLULOSE SYNTHASE LIKE A5		CELLULOSE SYNTHASE LIKE A5		3	BK000083. Q7PC73. LOC_Os03g26044.	 Biochemical character	Os03g0377700	LOC_Os03g26044.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane		
13884	CSLA6	OsCslA6, OsCSLA6	CELLULOSE SYNTHASE LIKE A6		CELLULOSE SYNTHASE LIKE A6		2	AF432498, AF435648, AU166554. Q6Z2T9. LOC_Os02g51060. Os02g0744500 (in Rap1 (build3)).	 Biochemical character	Os02g0744600	LOC_Os02g51060.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
13885	CSLA7	OsCslA7, OsCSLA7, OsCesA7, CesA7	CELLULOSE SYNTHASE LIKE A7		CELLULOSE SYNTHASE LIKE A7		7	AF435643, AU093819, BE040507. Q7XIF5.	 Biochemical character	Os07g0630900	LOC_Os07g43710.1				GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
13886	CSLA8	OsCslA8	CELLULOSE SYNTHASE LIKE A8		CELLULOSE SYNTHASE LIKE A8				 Biochemical character								
13887	CSLA9	OsCslA9, OsCSLA9, OsCesA9, CesA9	CELLULOSE SYNTHASE LIKE A9		CELLULOSE SYNTHASE LIKE A9		6	AF432499. Q67VS7.	 Biochemical character	Os06g0625700	LOC_Os06g42020.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
13888	CSLA10	OsCslA10	CELLULOSE SYNTHASE LIKE A10		CELLULOSE SYNTHASE LIKE A10				 Biochemical character								
13889	CSLC2	OsCslC2, OsCSLC2	CELLULOSE SYNTHASE LIKE C2		CELLULOSE SYNTHASE LIKE C2	Oscslc2, Oscslc2-1, Oscslc2-2	9	BK000087, AF435650. Q69L19, Q7PC70. GO:0080157: regulation of plant-type cell wall organization or biogenesis. GO:2000280: regulation of root development.	 Biochemical character,  Vegetative organ - Root	Os09g0428000	LOC_Os09g25900.1				GO:0009734 - auxin mediated signaling pathway, GO:0009969 - xyloglucan biosynthetic process, GO:0030308 - negative regulation of cell growth, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0009723 - response to ethylene stimulus, GO:0048364 - root development, GO:0009733 - response to auxin stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0005794 - Golgi apparatus, GO:0000139 - Golgi membrane, GO:0005634 - nucleus, GO:0052386 - cell wall thickening, GO:0005886 - plasma membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane	TO:0000173 - ethylene sensitivity, TO:0006003 - oligosaccharide content, TO:0000181 - seed weight, TO:0000227 - root length, TO:0000656 - root development trait, TO:0006007 - polysaccharide content, TO:0000163 - auxin sensitivity	PO:0000025 - root tip , PO:0007520 - root development stage 
13890	CSLC3	OsCslC3, OsCSLC3	CELLULOSE SYNTHASE LIKE C3		CELLULOSE SYNTHASE LIKE C3		8	BK000088. Q7PC69. LOC_Os08g15420.	 Biochemical character	Os08g0253800	LOC_Os08g15420.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0005886 - plasma membrane, GO:0005634 - nucleus		
13891	CSLC4	OsCslC4	CELLULOSE SYNTHASE LIKE C4		CELLULOSE SYNTHASE LIKE C4				 Biochemical character								
13892	CSLC5	OsCslC5	CELLULOSE SYNTHASE LIKE C5		CELLULOSE SYNTHASE LIKE C5				 Biochemical character								
13893	CSLC6	OsCslC6	CELLULOSE SYNTHASE LIKE C6		CELLULOSE SYNTHASE LIKE C6				 Biochemical character								
13894	CSLC7	OsCslC7, OsCSLC7	CELLULOSE SYNTHASE LIKE C7		CELLULOSE SYNTHASE LIKE C7		5	AF435642. Q6L538. GO:0080157: regulation of plant-type cell wall organization or biogenesis. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Biochemical character	Os05g0510800	LOC_Os05g43530.1				GO:0048364 - root development, GO:0000139 - Golgi membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009723 - response to ethylene stimulus, GO:0016021 - integral to membrane, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0009873 - ethylene mediated signaling pathway, GO:0052386 - cell wall thickening	TO:0000227 - root length, TO:0000173 - ethylene sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0000025 - root tip 
13895	CSLC8	OsCslC8	CELLULOSE SYNTHASE LIKE C8		CELLULOSE SYNTHASE LIKE C8				 Biochemical character								
13896	CSLC9	OsCslC9, OsCSLC9	CELLULOSE SYNTHASE LIKE C9		CELLULOSE SYNTHASE LIKE C9	Oscslc9	3	AF435652, AF435653, AF435641, AU068180. Q6AU53. GO:0080157: regulation of plant-type cell wall organization or biogenesis. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Biochemical character	Os03g0770800	LOC_Os03g56060.1				GO:0016021 - integral to membrane, GO:0048364 - root development, GO:0009723 - response to ethylene stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0009873 - ethylene mediated signaling pathway, GO:0052386 - cell wall thickening, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane, GO:0071669 - plant-type cell wall organization or biogenesis	TO:0000656 - root development trait, TO:0000173 - ethylene sensitivity, TO:0000227 - root length	PO:0007520 - root development stage , PO:0000025 - root tip 
13897	CSLD2	OsCslD2, OsCSLD2	CELLULOSE SYNTHASE LIKE D2		CELLULOSE SYNTHASE LIKE D2		6	BK000090, AF435649. Q9LHZ7. LOC_Os06g02180.	 Biochemical character	Os06g0111800	LOC_Os06g02180.1				GO:0005886 - plasma membrane, GO:0048767 - root hair elongation, GO:0030244 - cellulose biosynthetic process, GO:0030173 - integral to Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0009409 - response to cold, GO:0005783 - endoplasmic reticulum		
13898	CSLE2	OsCslE2, OsCSLE2	CELLULOSE SYNTHASE LIKE E2		CELLULOSE SYNTHASE LIKE E2		2	AF432501. Q0DXZ1.This is one of the three genes within the candidate gene region on chromosome 2 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os02g0725300	LOC_Os02g49332.4, LOC_Os02g49332.3, LOC_Os02g49332.2, LOC_Os02g49332.1				GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity		
13899	CSLE3	OsCslE3	CELLULOSE SYNTHASE LIKE E3		CELLULOSE SYNTHASE LIKE E3				 Biochemical character								
13900	CSLE4	OsCslE4	CELLULOSE SYNTHASE LIKE E4		CELLULOSE SYNTHASE LIKE E4				 Biochemical character								
13901	CSLE5	OsCslE5	CELLULOSE SYNTHASE LIKE E5		CELLULOSE SYNTHASE LIKE E5				 Biochemical character								
13902	CSLF2	OsCslF2, OsCSLF2	CELLULOSE SYNTHASE LIKE F2		CELLULOSE SYNTHASE LIKE F2		7	AF432503, AF435651, C98682, AU101138. Q84S11.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os07g0552800	LOC_Os07g36690.1				GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0002213 - defense response to insect, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity	TO:0000424 - brown planthopper resistance	PO:0020104 - leaf sheath , PO:0009047 - stem 
13903	CSLF3	OsCslF3, OsCSLF3	CELLULOSE SYNTHASE LIKE F3		CELLULOSE SYNTHASE LIKE F3		7	AF432504. Q6ZF85. LOC_Os07g36750. 	 Biochemical character	Os07g0553400	LOC_Os07g36750.1				GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane		
13904	CSLF4	OsCslF4, OsCSLF4	CELLULOSE SYNTHASE LIKE F4		CELLULOSE SYNTHASE LIKE F4		7	AF432505. Q6ZF86.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os07g0553300	LOC_Os07g36740.1				GO:0002213 - defense response to insect, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
13905	CSLF5	OsCslF5	CELLULOSE SYNTHASE LIKE F5		CELLULOSE SYNTHASE LIKE F5				 Biochemical character								
13906	CSLF6	OsCslF6, OsCSLF6, OsCLD3, CLD3	CELLULOSE SYNTHASE LIKE F6		CELLULOSE SYNTHASE LIKE F6	cslf6, cslf6-1, cslf6-2	8	AF435645. Q84UP7. OsCLD3 in Shi et al. 2016. TO:0020083: stem diameter. TO:0020068: beta-glucan content.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance	Os08g0160500	LOC_Os08g06380.2, LOC_Os08g06380.1				GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0002213 - defense response to insect, GO:0009753 - response to jasmonic acid stimulus, GO:0051274 - beta-glucan biosynthetic process, GO:0009664 - plant-type cell wall organization, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0052324 - cell wall cellulose biosynthetic process, GO:0070592 - cell wall polysaccharide biosynthetic process, GO:0030244 - cellulose biosynthetic process, GO:0006952 - defense response	TO:0000424 - brown planthopper resistance, TO:0000051 - stem strength, TO:0006007 - polysaccharide content, TO:0000063 - mimic response, TO:0000207 - plant height, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000205 - white-backed planthopper resistance	PO:0020104 - leaf sheath , PO:0009047 - stem 
13907	CSLF7	OsCslF7, OsCSLF7	CELLULOSE SYNTHASE LIKE F7		CELLULOSE SYNTHASE LIKE F7		10	BK000091. Q94GM9.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os10g0343400	LOC_Os10g20260.1				GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0002213 - defense response to insect, GO:0030244 - cellulose biosynthetic process, GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane	TO:0000424 - brown planthopper resistance	PO:0009005 - root 
13908	CSLH2	OsCslH2, OsCSLH2	CELLULOSE SYNTHASE LIKE H2		CELLULOSE SYNTHASE LIKE H2		4	BK000085. Q7XUT9, Q7PC71. LOC_Os04g35020.	 Biochemical character	Os04g0429500	LOC_Os04g35020.1				GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity		
13909	TBP2	OsTBP2	TATA-BOX BINDING PROTEIN 2	TATA binding protein 2	TATA-BOX BINDING PROTEIN 2		3	AF464907. Q8W0W4.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0657000	LOC_Os03g45410.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006352 - transcription initiation, GO:0005634 - nucleus	TO:0006001 - salt tolerance	
13910	_	OsTFIIB	_	transcription factor IIB			9	AF464908. Q8W0W3.	 Other	Os09g0534800	LOC_Os09g36440.1				GO:0006352 - transcription initiation, GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
13911	UBC5B	OsUBC5b, OsUBC15, UBC15	UBIQUITIN CONJUGATING ENZYME 5B	Ubiquitin conjugating enzyme 5b, Ubiquitin-conjugating enzyme 15	UBIQUITIN CONJUGATING ENZYME 5B		2	AB074412. Q8S919. LOC_Os02g16040.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0261100	LOC_Os02g16040.1, LOC_Os02g16040.2				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development, GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000276 - drought tolerance	PO:0001170 - seed development stage 
13912	UBC5A	OsUBC5a, OsUBC14, UBC14	UBIQUITIN CONJUGATING ENZYME 5A	Ubiquitin conjugating enzyme 5a, Ubiquitin-conjugating enzyme 14	UBIQUITIN CONJUGATING ENZYME 5A		1	AB074411. Q8S920.	 Biochemical character	Os01g0658400	LOC_Os01g46926.2, LOC_Os01g46926.1				GO:0048316 - seed development, GO:0009739 - response to gibberellin stimulus, GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding	TO:0000166 - gibberellic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
13913	PP2A-B'KAPPA	OsPP2A-B'kappa, OsB'kappa, B'kappa-PP2A	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' KAPPA	protein phosphatase 2A B'kappa subunit, PP2A regulatory subunit B'kappa	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' KAPPA	b'kappa-1, b'kappa-2	5	AJ312313, AJ272423, BE040415, AU085794, C27982. GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os05g0555100	LOC_Os05g48150.2, LOC_Os05g48150.1				GO:0000159 - protein phosphatase type 2A complex, GO:0009651 - response to salt stress, GO:0008601 - protein phosphatase type 2A regulator activity, GO:0007165 - signal transduction	TO:0006001 - salt tolerance	
13914	PP2A-B'ZETA	OsPP2A-B'zeta, OsB'zeta	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ZETA	protein phosphatase 2A B'zeta subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ZETA		3	AJ312314, AU092036, AU092032, D22058, D22057, D22055.		Os03g0844500	LOC_Os03g62730.3, LOC_Os03g62730.2, LOC_Os03g62730.1				GO:0005829 - cytosol, GO:0005777 - peroxisome, GO:0005730 - nucleolus, GO:0000159 - protein phosphatase type 2A complex, GO:0008601 - protein phosphatase type 2A regulator activity, GO:0007165 - signal transduction		
13915	PP2A-B'ETA	OsPP2A-B'eta, OsB'eta	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ETA	protein phosphatase 2A B'eta subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ETA		4	CAC09487, AU032466, AU057748, AU057747, AU032467.		Os04g0485100	LOC_Os04g40860.1				GO:0008601 - protein phosphatase type 2A regulator activity, GO:0005829 - cytosol, GO:0007165 - signal transduction, GO:0005777 - peroxisome, GO:0005730 - nucleolus, GO:0000159 - protein phosphatase type 2A complex		
13916	PP2A-B'THETA	OsPP2A-B'theta, OsB'theta, PP2A-B'theta, OsPP2A-B'theta, OsB'theta	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' THETA	protein phosphatase 2A B'theta subunit, PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' theta, protein phosphatase 2A B'theta subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' THETA		8	AJ312315.		Os08g0122000	LOC_Os08g02860.1				GO:0007165 - signal transduction, GO:0005730 - nucleolus, GO:0005777 - peroxisome, GO:0000159 - protein phosphatase type 2A complex, GO:0005829 - cytosol, GO:0008601 - protein phosphatase type 2A regulator activity		
13917	PP2A-B'lambda	OsPP2A-B'lambda, OsB'lambda	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' lambda	protein phosphatase 2A B'lambda subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' lambda			BAB07976 (obsolete).									
13918	RRJ1	OsRRJ1	_	cystathionine gamma-synthase, methionine gamma-lyase			10	a Jasmonic acid (JA)-responsive gene. AB040741, AT003692.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0517500	LOC_Os10g37340.1				GO:0006730 - one-carbon metabolic process, GO:0005829 - cytosol, GO:0004123 - cystathionine gamma-lyase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0019346 - transsulfuration, GO:0019343 - cysteine biosynthetic process via cystathionine, GO:0046689 - response to mercury ion, GO:0010288 - response to lead ion, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0030170 - pyridoxal phosphate binding, GO:0016846 - carbon-sulfur lyase activity, GO:0018826 - methionine gamma-lyase activity, GO:0019458 - methionine catabolic process via 2-oxobutanoate, GO:0051289 - protein homotetramerization	TO:0000034 - chromium sensitivity, TO:0000172 - jasmonic acid sensitivity	
13919	_	OsMCP, MCP, OsSO1, SO1	_	Moco containing protein, sulfite oxidase 1			8	AB071966.	 Biochemical character	Os08g0530400	LOC_Os08g41830.1				GO:0020037 - heme binding, GO:0016491 - oxidoreductase activity, GO:0043546 - molybdopterin cofactor binding, GO:0010477 - response to sulfur dioxide, GO:0006790 - sulfur metabolic process, GO:0015994 - chlorophyll metabolic process, GO:0008482 - sulfite oxidase activity, GO:0030151 - molybdenum ion binding, GO:0009055 - electron carrier activity, GO:0005777 - peroxisome, GO:0042128 - nitrate assimilation, GO:0005739 - mitochondrion		
13920	G1	Osg1, g1	GLUCANASE 1	glucanase 1	GLUCANASE 1		1	AB070742. beta-1, 3-glucanase	 Biochemical character	Os01g0947700	LOC_Os01g71930.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0010383 - cell wall polysaccharide metabolic process		PO:0009071 - anther wall tapetum 
13921	GNS2	Gns2, OsGns2	BETA-1,3-GLUCANASE 2	beta-1, 3-glucanase 2	BETA-1,3-GLUCANASE 2		1	U72248.	 Biochemical character	Os01g0944900	LOC_Os01g71690.3, LOC_Os01g71690.2				GO:0005618 - cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0048046 - apoplast, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009651 - response to salt stress, GO:0009617 - response to bacterium, GO:0009409 - response to cold, GO:0005975 - carbohydrate metabolic process		
13922	GNS3	Gns3, OsGns3	BETA-1,3-GLUCANASE 3	beta-1, 3-glucanase 3	BETA-1,3-GLUCANASE 3		1	U72249.	 Biochemical character	Os01g0944800	LOC_Os01g71680.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
13923	GNS5	Gns5, OsGns5	BETA-1,3-GLUCANASE 5	beta-1, 3-glucanase 5	BETA-1,3-GLUCANASE 5		1	U72251.	 Tolerance and resistance - Disease resistance,  Biochemical character						GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0052543 - callose deposition in cell wall, GO:0005975 - carbohydrate metabolic process, GO:0002215 - defense response to nematode	TO:0000328 - sucrose content, TO:0000384 - nematode damage resistance	
13924	GNS6	Gns6, OsGns6, OsPR2, PR2	BETA-1,3-GLUCANASE 6	beta-1, 3-glucanase 6, Pathogenesis related gene 2	BETA-1,3-GLUCANASE 6		1	U72252. pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0940800	LOC_Os01g71350.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009651 - response to salt stress, GO:0009617 - response to bacterium, GO:0009409 - response to cold, GO:0048046 - apoplast, GO:0005975 - carbohydrate metabolic process, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0009817 - defense response to fungus, incompatible interaction, GO:0005618 - cell wall		
13925	GNS7	Gns7, OsGns7	BETA-1,3-GLUCANASE 7	beta-1, 3-glucanase 7	BETA-1,3-GLUCANASE 7		1	U72253.	 Biochemical character	Os01g0801500	LOC_Os01g58730.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13926	GNS8	Gns8, OsGns8	BETA-1,3-GLUCANASE 8	beta-1, 3-glucanase 8	BETA-1,3-GLUCANASE 8		5	U72254.	 Biochemical character	Os05g0495900	LOC_Os05g41610.1				GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009817 - defense response to fungus, incompatible interaction, GO:0005975 - carbohydrate metabolic process, GO:0009617 - response to bacterium, GO:0009409 - response to cold, GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0005618 - cell wall		
13927	GNS9	Gns9, OsGns9, OsPR8a, PR8a, OsBGL12, BGL12, BG12, OsBG12	BETA-1,3-GLUCANASE 9	beta-1, 3-glucanase 9, Pathogenesis related gene 8a, beta-glucanase 12	BETA-1,3-GLUCANASE 9		2	U72255. a target of miR5487.	 Reproductive organ,  Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0771700	LOC_Os02g53200.2, LOC_Os02g53200.1				GO:0005975 - carbohydrate metabolic process, GO:0009738 - abscisic acid mediated signaling, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009555 - pollen development, GO:0009617 - response to bacterium, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	PO:0001007 - pollen development stage 
13928	GNS10	Gns10, OsGns10	BETA-1,3-GLUCANASE 10	beta-1, 3-glucanase 10	BETA-1,3-GLUCANASE 10		1	D41315. pathogenesis-related (PR) gene. PR2 in Kachewar et al. 2019.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0713200	LOC_Os01g51570.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
13929	GNS11	Gns11, OsGns11, OsBGL3, BGL3	BETA-1,3-GLUCANASE 11	"\"beta-1, 3-glucanase 11\", beta-glucanase 3"	BETA-1,3-GLUCANASE 11	osbgls3	7	D28296.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0539100	LOC_Os07g35480.3, LOC_Os07g35480.2, LOC_Os07g35480.1				GO:0009611 - response to wounding, GO:0009751 - response to salicylic acid stimulus, GO:0052542 - callose deposition during defense response, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	PO:0025034 - leaf , PO:0020104 - leaf sheath 
13930	GNS12	Gns12, OsGns12	BETA-1,3-GLUCANASE 12	beta-1, 3-glucanase 12	BETA-1,3-GLUCANASE 12		7	D24634.	 Biochemical character	Os07g0539400	LOC_Os07g35520.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
13931	GNS13	Gns13, OsGns13	BETA-1,3-GLUCANASE 13	beta-1, 3-glucanase 13	BETA-1,3-GLUCANASE 13		7	D23759.	 Biochemical character	Os07g0539300	LOC_Os07g35510.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
13932	GNS14	Gns14, OsGns14	BETA-1,3-GLUCANASE 14	beta-1, 3-glucanase 14	BETA-1,3-GLUCANASE 14			D25236.	 Biochemical character								
13933	_	CRR	_					a centromere-specific retrotransposon. AY101510.	 Other						GO:0032196 - transposition		
13934	_	Osr1, Tos14, Rire15	_	LTR retrotransposon Osr1			10	AC023240: 100410-106807.	 Other						GO:0032196 - transposition		
13935	_	Osr6	_	LTR retrotransposon Osr6			1	AP001366: 57569-62773.	 Other						GO:0032196 - transposition		
13936	_	Osr3	_	LTR retrotransposon Osr3			3	AF458765: 51- 5250.	 Other						GO:0032196 - transposition		
13937	_	Osr4	_	LTR retrotransposon Osr4			6	AB026295: 160208-165872. a copia retrotransposon.	 Other						GO:0032196 - transposition		
13938	_	Osr5	_	LTR retrotransposon Osr5			10	AC021891: 56044-62135.	 Other						GO:0032196 - transposition		
13939	_	Osr7	_	LTR retrotransposon Osr7			1	AP002538 44996-53915.	 Other						GO:0032196 - transposition		
13940	_	Osr8	_	LTR retrotransposon Osr8			10	AC021891: 65191-74406.	 Other						GO:0032196 - transposition		
13941	_	Osr9	_	LTR retrotransposon Osr9			1	AP000969: 25869-28634.	 Other						GO:0032196 - transposition		
13942	_	Osr10	_	LTR retrotransposon Osr10			10	AC069324: 137920 -139740.	 Other						GO:0032196 - transposition		
13943	_	Osr12	_	LTR retrotransposon Osr12			10	AC073166: 104289-109024.	 Other						GO:0032196 - transposition		
13944	_	Osr13, Tos5	_	LTR retrotransposon Osr13			5	AC073405: 72924-79364. a copia retrotransposon.	 Other						GO:0032196 - transposition		
13945	_	Osr15, Tos12	_	LTR retrotransposon Osr15			1	AP002867: 127118-132180.	 Other						GO:0032196 - transposition		
13946	_	Osr16, Tos6	_	LTR retrotransposon Osr16			1	AP002845: 42644-49551.	 Other						GO:0032196 - transposition		
13947	_	Osr17	_	LTR retrotransposon Osr17			10	AC018727: 102539-96583.	 Other						GO:0032196 - transposition		
13948	_	Osr18	_	LTR retrotransposon Osr18			10	AC068654: 23423-25036.	 Other						GO:0032196 - transposition		
13949	_	Osr19	_	LTR retrotransposon Osr19			10	AC069300: 73013-77731.	 Other						GO:0032196 - transposition		
13950	_	Osr20	_	LTR retrotransposon Osr20			3	AC084406: 8749-14200.	 Other						GO:0032196 - transposition		
13951	_	Osr22	_	LTR retrotransposon Osr22			10	AC074283: 24546- 19810.	 Other						GO:0032196 - transposition		
13952	_	Osr24	_	LTR retrotransposon Osr24			3	AC016781: 25997-30858.	 Other						GO:0032196 - transposition		
13953	_	Osr25	_	LTR retrotransposon Osr25			1	AP001278: 28729 35569.	 Other						GO:0032196 - transposition		
13954	_	Osr28	_	LTR retrotransposon Osr28			1	AP002539: 139654-121650.	 Other						GO:0032196 - transposition		
13955	_	Osr29	_	LTR retrotransposon Osr29			1	AP002747: 78609-87615.	 Other						GO:0032196 - transposition		
13956	_	Osr30	_	LTR retrotransposon Osr30			10	AC078891: 52683-65684.	 Other						GO:0032196 - transposition		
13957	_	Osr32	_	LTR retrotransposon Osr32			1	AP002820: 111559-12278.	 Other						GO:0032196 - transposition		
13958	_	Osr34	_	LTR retrotransposon Osr34			5	AF111709: 25889-38685.	 Other						GO:0032196 - transposition		
13959	_	Osr38	_	LTR retrotransposon Osr38			4	AF458766: 31-5535.	 Other						GO:0032196 - transposition		
13960	_	Osr39	_	LTR retrotransposon Osr39			4	AF458767: 51-5267.	 Other						GO:0032196 - transposition		
13961	_	Osr40	_	LTR retrotransposon Osr40			10	AC020666: 65731-77151.	 Other						GO:0032196 - transposition		
13962	_	Osr41	_	LTR retrotransposon Osr41			1	AP003631: 27347-43001.	 Other						GO:0032196 - transposition		
13963	_	Osr42	_	LTR retrotransposon Osr42			4	AF458768: 51-5655.	 Other						GO:0032196 - transposition		
13964	_	Osr43	_	LTR retrotransposon Osr43			1	AP000815: 77117-78910.	 Other						GO:0032196 - transposition		
13965	_	Osr44	_	LTR retrotransposon Osr44			8	AP000364: 41541-42747.	 Other						GO:0032196 - transposition		
13966	_	Osr37	_	LTR retrotransposon Osr37			10	AC068654: 2534-6969.	 Other						GO:0032196 - transposition		
13967	_	OsLPLA	_	lipoyl-protein ligase A			8	EF015469.	 Biochemical character	Os08g0435800	LOC_Os08g33810.1				GO:0006464 - protein modification process, GO:0016874 - ligase activity		
13968	RALYASE1	OsRALyase1, RALyase1, OsFBX17, FBX17	RNA APURINIC SITE SPECIFIC LYASE 1	RNA apurinic site specific lyase 1, F-box-type E3 ubiquitin ligase X17	RNA APURINIC SITE SPECIFIC LYASE 1		1	a RelA-SpoT homolog protein. AB073639.	 Biochemical character	Os01g0595700	LOC_Os01g41250.1				GO:0016829 - lyase activity		
13969	_	Oscor413-pm1	_	COR413-plasma membrane group multispanning transmembrane protein 1, cold-regulated 413-plasma membrane group multispanning transmembrane protein 1			3	AF283006.	 Tolerance and resistance - Stress tolerance	Os03g0767800	LOC_Os03g55850.1				GO:0009749 - response to glucose stimulus, GO:0009631 - cold acclimation, GO:0009737 - response to abscisic acid stimulus, GO:0042631 - cellular response to water deprivation, GO:0005774 - vacuolar membrane, GO:0009750 - response to fructose stimulus, GO:0005886 - plasma membrane, GO:0009744 - response to sucrose stimulus		
13970	_	OsBBR, BBR, OsGBP4, GBP4	_	barlet b recombinant protein, rice BBR protein, GA octodinucleotide repeat binding factor BBR, barley B recombinant like protein C, GAGA-binding transcription factor 4			10	AAK52535. AY570520, AY570521. Q7XH85.	 Other	Os10g0115500	LOC_Os10g02620.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding		
13971	_	OsGBP2, GBP2	_	barley B recombinant like protein A, GAGA-binding transcription factor 2			10	AY569035. P0DH88.	 Other	Os10g0114500	LOC_Os10g02509.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent		
13972	_	OsGBP3, GBP3	_	barley B recombinant like protein B, GAGA-binding transcription factor 3			10	LOC_Os10g02584. AY569036, AY569037. P0DH89. TO:0000975: grain width.	 Vegetative organ - Culm,  Other,  Seed - Morphological traits	Os10g0115200	LOC_Os10g02584.1, LOC_Os10g02584.2, LOC_Os10g02584.3				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000207 - plant height, TO:0000734 - grain length	
13973	_	OsGBP1, GBP1	_	barley B recombinant like protein D, GAGA-binding transcription factor 1			6	LOC_Os06g04010. AY957504, AY957505. Q5VSA8. TO:0000975: grain width.	 Vegetative organ - Culm,  Seed - Morphological traits,  Other,  Reproductive organ - Heading date	Os06g0130600	LOC_Os06g04010.1, LOC_Os06g04010.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0000734 - grain length	
13974	_	UXS, UXS-3, OsUXS3	_	UDP-D-glucuronic acid decarboxylase, UDP-glucuronic acid decarboxylase 3, UDP-xylose synthase 3			3	BAB84334. AB079064. 	 Biochemical character	Os03g0278000 	LOC_Os03g16980.1, LOC_Os03g16980.2, LOC_Os03g16980.3, LOC_Os03g16980.4, LOC_Os03g16980.5				GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0042732 - D-xylose metabolic process, GO:0005886 - plasma membrane, GO:0048040 - UDP-glucuronate decarboxylase activity		
13975	_	UXS-4, OsUXS4	_	UDP-glucuronic acid decarboxylase 4, UDP-xylose synthase 4			1	AB079063. 	 Biochemical character	Os01g0837300 	LOC_Os01g62020.1, LOC_Os01g62020.2				GO:0048040 - UDP-glucuronate decarboxylase activity, GO:0050662 - coenzyme binding, GO:0005794 - Golgi apparatus, GO:0042732 - D-xylose metabolic process, GO:0044237 - cellular metabolic process		
13976	PANGRANGIA	Pangrangia	TRANSPOSON MITE PANGRANGIA	MITE element Pangrangia, Pangrangia-MITE transposon				Pangrangja MITE sequences of Oryza sativa and other wild rice species: AY133195-AY133224, AY242985-AY242994.	 Other						GO:0032196 - transposition		
13977	_	ARC6	_	ARC6-like gene, ARC6 homolog, plastid division protein Arc6			2	BK000999.							GO:0010020 - chloroplast fission, GO:0010207 - photosystem II assembly, GO:0006457 - protein folding, GO:0031357 - integral to chloroplast inner membrane		
13978	BP-5	OsBP-5, OsBP5, BP5	DNA BINDING PROTEIN 5	MYC-like protein OsBP5	DNA BINDING PROTEIN 5			a MYC protein. AJ487830.	 Other,  Seed - Physiological traits - Storage substances						GO:0005634 - nucleus, GO:0032885 - regulation of polysaccharide biosynthetic process	TO:0000196 - amylose content	PO:0001170 - seed development stage 
13979	_	SMC1	_	structural maintenance of chromosomes protein 1				AJ535209.	 Other						GO:0033044 - regulation of chromosome organization, GO:0007062 - sister chromatid cohesion, GO:0006810 - transport, GO:0045492 - xylan biosynthetic process, GO:0009507 - chloroplast, GO:0008278 - cohesin complex, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005524 - ATP binding, GO:0005215 - transporter activity, GO:0006310 - DNA recombination, GO:0006281 - DNA repair, GO:0016246 - RNA interference, GO:0006396 - RNA processing, GO:0030261 - chromosome condensation, GO:0009855 - determination of bilateral symmetry, GO:0010413 - glucuronoxylan metabolic process, GO:0009630 - gravitropism, GO:0010014 - meristem initiation, GO:0010073 - meristem maintenance, GO:0006346 - methylation-dependent chromatin silencing, GO:0000278 - mitotic cell cycle, GO:0009887 - organ morphogenesis, GO:0010638 - positive regulation of organelle organization		
13980	_	SMC2	_	structural maintenance of chromosomes protein 2			1	AJ535210.	 Other	Os01g0904400	LOC_Os01g67740.1				GO:0007062 - sister chromatid cohesion, GO:0007076 - mitotic chromosome condensation, GO:0006310 - DNA recombination, GO:0005524 - ATP binding, GO:0006281 - DNA repair, GO:0000796 - condensin complex, GO:0005634 - nucleus		
13981	_	SMC3	_	structural maintenance of chromosomes protein 3			2	AJ535211.	 Other	Os02g0133300	LOC_Os02g04040.1				GO:0005694 - chromosome, GO:0051276 - chromosome organization, GO:0005524 - ATP binding		
13982	_	SMC4, OsSMC4	_	structural maintenance of chromosomes protein 4			5	AJ488495. LOC_Os05g41750. Os05g0497100 (in Rap3 (build5)).	 Other	Os05g0497150	LOC_Os05g41750.1				GO:0008283 - cell proliferation, GO:0030261 - chromosome condensation, GO:0000911 - cytokinesis by cell plate formation, GO:0006270 - DNA replication initiation, GO:0006281 - DNA repair, GO:0006306 - DNA methylation, GO:0005694 - chromosome, GO:0005524 - ATP binding, GO:0051607 - defense response to virus, GO:0048449 - floral organ formation, GO:0051567 - histone H3-K9 methylation, GO:0006346 - methylation-dependent chromatin silencing, GO:0007067 - mitosis, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:0007131 - reciprocal meiotic recombination, GO:0006275 - regulation of DNA replication, GO:0010389 - regulation of G2/M transition of mitotic cell cycle, GO:0009909 - regulation of flower development, GO:0007062 - sister chromatid cohesion, GO:0007129 - synapsis, GO:0006810 - transport, GO:0005634 - nucleus, GO:0005215 - transporter activity, GO:0031048 - chromatin silencing by small RNA		
13983	_	SMC5	_	structural maintenance of chromosomes protein 5			5	AJ535212.	 Other	Os05g0596600	LOC_Os05g51790.1, LOC_Os05g51790.2				GO:0005524 - ATP binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0030915 - Smc5-Smc6 complex, GO:0009506 - plasmodesma, GO:0051607 - defense response to virus, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0010267 - production of ta-siRNAs involved in RNA interference, GO:0007062 - sister chromatid cohesion		
13984	SMC6	OsSMC6, SMC6a, OsSMC6a	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6	structural maintenance of chromosomes protein 6	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6		9	AJ535213.	 Other	Os09g0121000	LOC_Os09g03370.1				GO:0006302 - double-strand break repair, GO:0000724 - double-strand break repair via homologous recombination, GO:0030915 - Smc5-Smc6 complex, GO:0016887 - ATPase activity		
13985	_	OsALD1, ALD1	_	AGD2-LIKE DEFENSE RESPONSE PROTEIN1, ABERRANT GROWTH AND DEATH2 [AGD2]-LIKE DEFENSE1, AGD2-LIKE DEFENSE 1			3	AY338236. Q6VMN7.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0195100	LOC_Os03g09910.1				GO:0009693 - ethylene biosynthetic process, GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0010150 - leaf senescence, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0030170 - pyridoxal phosphate binding, GO:0042742 - defense response to bacterium, GO:0010285 - L,L-diaminopimelate aminotransferase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
13986	AGD2	OsAGD2, OsLC3, LC3	ABERRANT GROWTH AND DEATH 2	aberrant growth and death2, lysine content 3, lysine content on chromosome 3			3	AY338235. Q10MQ2.	 Biochemical character,  Seed - Physiological traits - Storage substances	Os03g0299900	LOC_Os03g18810.1				GO:0010285 - L,L-diaminopimelate aminotransferase activity, GO:0005507 - copper ion binding, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0030170 - pyridoxal phosphate binding, GO:0009570 - chloroplast stroma, GO:0009693 - ethylene biosynthetic process	TO:0002673 - amino acid content	PO:0007633 - endosperm development stage 
13987	_	PINO1, INO1	_	Porteresia coarctata INO1 gene				AF412340. the INO1 gene from Porteresia coarctata (Oryza coarctata (Wild rice)) (Roxb.) Tateoka. a novel salt-tolerant MIPS.	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0004512 - inositol-3-phosphate synthase activity, GO:0006021 - inositol biosynthetic process, GO:0008654 - phospholipid biosynthetic process		
13988	_	Ose705	_				11	AF049348. CXCXC repeat zinc finger protein.	 Seed							TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
13991	PSBK	psbK	PHOTOSYSTEM II SUBUNIT K	photosystem II protein K, PSII K protein	PHOTOSYSTEM II SUBUNIT K		Pt	P0C409, P0C410. LOC_Osp1g00140. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46106: Nip011 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA34010 (Japonica Group chloroplast genome). GU592207: ADD62819 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00140				GO:0009539 - photosystem II reaction center, GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0009507 - chloroplast		
13992	PSBI	psbI	PHOTOSYSTEM II SUBUNIT I	photosystem II protein I, PSII I protein	PHOTOSYSTEM II SUBUNIT I		Pt	LOC_Osp1g00150. P0C406, P0C407. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46107: Nip012  (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34011 (Japonica Group chloroplast genome). GU592207:ADD62820  (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00150				GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis, GO:0009539 - photosystem II reaction center		
13993	PSBD	psbD, D2, OsPsbD1, OsPsbD2	PHOTOSYSTEM II SUBUNIT D2	photosystem II protein D2, PSII D2 protein, reaction center protein D2	PHOTOSYSTEM II SUBUNIT D2		Pt	P0C436, P0C437. LOC_Osp1g00170. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46108: Nip018 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34013 (Japonica Group chloroplast genome). S46932. GU592207:ADD62821 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). OsPsbD1 in Teng et al. 2014.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character		LOC_Osp1g00170				GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0010287 - plastoglobule, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0016491 - oxidoreductase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0005506 - iron ion binding, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0009523 - photosystem II	TO:0000437 - male sterility	
13994	PSBC	psbC, cp43, OsPSBC, OsCP43	_	photosystem II 44 kDa protein, PSII 43kDa protein, photosystem II CP43 chlorophyll apoprotein, photosystem II subunit PsbC, photosystem II component CP43			Pt	P0C366, P0C367. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46109: Nip019 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34014 (Japonica Group chloroplast genome). chlorophyll-binding antenna protein of photosystem II. GU592207:ADD62822 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00180				GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0009737 - response to abscisic acid stimulus, GO:0010206 - photosystem II repair, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0016021 - integral to membrane, GO:0016168 - chlorophyll binding, GO:0018298 - protein-chromophore linkage, GO:0030076 - light-harvesting complex, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0009523 - photosystem II	TO:0000615 - abscisic acid sensitivity	
13995	PSBM	psbM	_	photosystem II M protein, PSII low MW protein, photosystem II protein M			Pt	LOC_Osp1g00220. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46110: Nip029 (cultivar Nipponbare), AY522331 (isolate PA64S). P0C413. X15901:CAA33984 (Japonica Group chloroplast genome). GU592207:ADD62823 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00220				GO:0009536 - plastid, GO:0009523 - photosystem II		
13996	RPOB	rpoB, RpoB, Rpobeta	RNA POLYMERASE SUBUNIT B	RNA polymerase beta chain, RNA polymerase beta subunit, Beta subunit of rice chloroplast RNA polymerase	RNA POLYMERASE SUBUNIT B		Pt	P0C502, P0C503. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46111: Nip036 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33986 (Japonica Group chloroplast genome). FJ908467-FJ908481 (wild rice species, trnC-rpoB intergenic spacer). GU592207:ADD62824 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00240				GO:0003899 - DNA-directed RNA polymerase activity, GO:0032549 - ribonucleoside binding, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0009536 - plastid, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009295 - nucleoid	TO:0002715 - chloroplast development trait	
13997	RPS2	rps2	RIBOSOMAL PROTEIN S2	ribosomal protein S2	RIBOSOMAL PROTEIN S2		Pt	P0C481, P0C482. LOC_Osp1g00270. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46114: Nip040 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33989 (Japonica Group chloroplast genome). GU592207:ADD62827 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00270				GO:0009536 - plastid, GO:0006412 - translation, GO:0009570 - chloroplast stroma, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit, GO:0016020 - membrane		
13998	_	atpI	_	ATP synthase CF0 A chain, ATPase a subunit, ATP synthase CF0 subunit IV, ATPase a			Pt	P0C2Y6, P0C2Y7. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46115: Nip041 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33990 (Japonica Group chloroplast genome). FJ908195-FJ908209 (wild rice species). GU592207:ADD62828 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). AK121120.	 Biochemical character		LOC_Osp1g00280				GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0005886 - plasma membrane, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0042777 - plasma membrane ATP synthesis coupled proton transport, GO:0009536 - plastid		
13999	_	atpH	_	ATP synthase CF0 C chain, ATPase III subunit, ATP synthase CF0 subunit III			Pt	LOC_Osp1g00290. P0C300, P0C301. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46116: Nip042 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33991 (Japonica Group chloroplast genome). GU592207:ADD62829 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00290				GO:0015986 - ATP synthesis coupled proton transport, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0016021 - integral to membrane, GO:0008289 - lipid binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o)		
14000	_	atpA	_	ATP synthase CF1 alpha chain, ATPase alpha subunit, ATP synthase CF1 alpha subunit			Pt	P0C2Z5, P0C2Z6. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46118: Nip046 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33993 (Japonica Group chloroplast genome). GU592207:ADD62831 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00310				GO:0042777 - plasma membrane ATP synthesis coupled proton transport, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0010287 - plastoglobule, GO:0010319 - stromule, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0015986 - ATP synthesis coupled proton transport, GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0015991 - ATP hydrolysis coupled proton transport, GO:0031977 - thylakoid lumen, GO:0042742 - defense response to bacterium		
14003	RPS4	rps4	RIBOSOMAL PROTEIN S4	chloroplast ribosomal protein S4, ribosomal protein S4	RIBOSOMAL PROTEIN S4		Pt	LOC_Osp1g00360. P0C487, P0C488. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46122: Nip054 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33998 (Japonica Group chloroplast genome). GU592207:ADD62835 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00360				GO:0015935 - small ribosomal subunit, GO:0006412 - translation, GO:0009570 - chloroplast stroma, GO:0019843 - rRNA binding, GO:0009536 - plastid, GO:0016020 - membrane, GO:0003735 - structural constituent of ribosome		
14004	NDHJ	ORF159, ndhJ	NADH DEHYDROGENASE SUBUNIT J	NADH dehydrogenase subunit J, NADH-plastoquinone oxidoreductase subunit J	NADH DEHYDROGENASE SUBUNIT J		Pt	P0C339, P0C340. LOC_Osp1g00370. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46123: Nip057 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33999 (Japonica Group chloroplast genome). GU592207:ADD62836 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00370				GO:0048038 - quinone binding, GO:0019684 - photosynthesis, light reaction, GO:0006810 - transport, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0009970 - cellular response to sulfate starvation, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
14005	NDHK	psbG, ndhK	NADH DEHYDROGENASE SUBUNIT K	NADH dehydrogenase subunit K, PSII G protein, NADH-plastoquinone oxidoreductase subunit K	NADH DEHYDROGENASE SUBUNIT K		Pt	LOC_Osp1g00380. P0C342, P0C343. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46124: Nip058 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA3400 (Japonica Group chloroplast genome). GU592207:ADD62837 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00380				GO:0006810 - transport, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0019684 - photosynthesis, light reaction, GO:0048038 - quinone binding, GO:0005506 - iron ion binding, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0051539 - 4 iron, 4 sulfur cluster binding		
14006	NDHC	ndhC	NADH DEHYDROGENASE SUBUNIT 3	NADH dehydrogenase subunit 3, NADH dehydrogenase ND3, NADH-plastoquinone oxidoreductase subunit 3	NADH DEHYDROGENASE SUBUNIT 3		Pt	LOC_Osp1g00390. P0C321, P0C322. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46125: Nip059 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA34001 (Japonica Group chloroplast genome). FJ908303-FJ908317 (wild rice species). AB436227-AB436285 (wild rice species, ndhC-tRNA Val intergenic region). GU592207:ADD62838 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00390				GO:0006810 - transport, GO:0048038 - quinone binding, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0019684 - photosynthesis, light reaction		
14008	_	ORF106, accD	_	acetyl-CoA carboxylase beta subunit, acetyl-CoA carboxylase carboxyltransferase beta subunit			Pt	LOC_Osp1g00440. P0C2Y3, P0C2Y4. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46128: Nip067 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33956 (Japonica Group chloroplast genome). GU592207:ADD62841 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome).	 Biochemical character		LOC_Osp1g00440				GO:0009570 - chloroplast stroma, GO:0016874 - ligase activity, GO:0006633 - fatty acid biosynthetic process, GO:0005524 - ATP binding, GO:0009536 - plastid		
14009	YCF4	Ycf4, ORF185	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4	photosystem I assembly protein Ycf4	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4		Pt	P0C514, P0C515. LOC_Osp1g00460. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46129: Nip069 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33958 (Japonica Group chloroplast genome). GU592207:ADD62842 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00460				GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0009522 - photosystem I, GO:0009536 - plastid, GO:0015979 - photosynthesis		
14010	PETA	petA, Cytf, cytF, Cyt f, OsPETA	_	cytochrome f, cytochrome b6f complex subunit PetA	_		Pt	P0C388, P0C389. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46130: Nip074 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33961 (Japonica Group chloroplast genome). GU592207:ADD62844 (Japonica chloroplast comlete genome). M15955. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osp1g00480				GO:0009535 - chloroplast thylakoid membrane, GO:0020037 - heme binding, GO:0015979 - photosynthesis, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0031361 - integral to thylakoid membrane, GO:0055114 - oxidation reduction, GO:0009536 - plastid, GO:0012501 - programmed cell death	TO:0000437 - male sterility	
14011	PSBF	psbF	_	cytochrome b559 beta chain, PSII cytochrome b559, photosystem II cytochrome b559 beta subunit			Pt	P0C400, P0C401. LOC_Osp1g00510. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46131: Nip078 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33964 (Japonica Group chloroplast genome). GU592207:ADD62846 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00510				GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0009539 - photosystem II reaction center, GO:0009767 - photosynthetic electron transport chain		
14012	PSBE	psbE	_	cytochrome b559 alpha chain, PSII cytochrome b559, photosystem II cytochrome b559 alpha subunit			Pt	P0C369, P0C370. LOC_Osp1g00520. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46132: Nip079 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33965 (Japonica Group chloroplast genome). GU592207:ADD62847 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00520				GO:0009055 - electron carrier activity, GO:0009767 - photosynthetic electron transport chain, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0009536 - plastid, GO:0009539 - photosystem II reaction center, GO:0005506 - iron ion binding		
14013	PETE	petE, petG	_	cytochrome b6/f complex subunit V, cytochrome b/f complex subunit 5	_		Pt	LOC_Osp1g00540. P0C391, P0C392. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46133: Nip082 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33967 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). petG in Masood et al. 2004 (Oryza nivara) and Zhang et al. 2012 (Indica).	 Biochemical character		LOC_Osp1g00540				GO:0009512 - cytochrome b6f complex, GO:0009536 - plastid, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0015979 - photosynthesis, GO:0017004 - cytochrome complex assembly, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0055114 - oxidation reduction		
14014	RPL33	rpl33	RIBOSOMAL PROTEIN L33	ribosomal protein L33	RIBOSOMAL PROTEIN L33		Pt	LOC_Osp1g00560. P0C456, P0C457. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46134: Nip086 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA3396 (Japonica Group chloroplast genome). FJ908542-FJ908556 (wild rice species). GU592207:ADD62848 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00560				GO:0005840 - ribosome, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
14015	RPS18	rps18	RIBOSOMAL PROTEIN S18	ribosomal protein S18	RIBOSOMAL PROTEIN S18		Pt	P0C476, P0C477. LOC_Osp1g00570. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46135: Nip088 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33970 (Japonica Group chloroplast genome). GU592207:ADD62849 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00570				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation, GO:0009536 - plastid, GO:0009570 - chloroplast stroma, GO:0009941 - chloroplast envelope, GO:0019843 - rRNA binding		
14016	CLPP	ORF216, ClpP, clpP	CHLOROPLAST PROTEASE 	ATP-dependent Clp protease proteolytic subunit, plastidic caseinolytic protease, chloroplast Clp, clp protease proteolytic subunit	CHLOROPLAST PROTEASE 		Pt	P0C313, P0C314. LOC_Osp1g00590. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46136: Nip089 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33972 (Japonica Group chloroplast genome). FJ908162-FJ908176 (wild rice species). GU592207:ADD62850 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). 	 Biochemical character		LOC_Osp1g00590				GO:0005524 - ATP binding, GO:0004252 - serine-type endopeptidase activity, GO:0009536 - plastid, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0009535 - chloroplast thylakoid membrane, GO:0006508 - proteolysis		
14017	PSBB	psbB, OsPSBB	_	photosystem II 47 kDa protein, PSII 47kDa protein, photosystem II CP47 chlorophyll apoprotein, photosystem II subunit PsbB			Pt	P0C363, P0C364. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46137: Nip090 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33973 (Japonica Group chloroplast genome). GU592207:ADD62851 (Japonica chloroplast comlete genome). D29700. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GQ848589.	 Biochemical character		LOC_Osp1g00600				GO:0016021 - integral to membrane, GO:0009523 - photosystem II, GO:0016168 - chlorophyll binding, GO:0009536 - plastid, GO:0009767 - photosynthetic electron transport chain, GO:0018298 - protein-chromophore linkage, GO:0010206 - photosystem II repair, GO:0009737 - response to abscisic acid stimulus, GO:0009535 - chloroplast thylakoid membrane	TO:0000615 - abscisic acid sensitivity	
14018	PSBN	psbN	PHOTOSYSTEM II PROTEIN N	photosystem II protein N	PHOTOSYSTEM II PROTEIN N		Pt	AY522329:AAS46072 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46138: Nip092 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207: ADD62852 (Japonica chloroplast comlete genome).							GO:0009507 - chloroplast		
14019	PSBH	psbH, psbF	PHOTOSYSTEM II PHOSPHOPROTEIN	photosystem II phosphoprotein, PSII 10kDa phosphoprotein, Photosystem II 10 kDa phosphoprotein	PHOTOSYSTEM II PHOSPHOPROTEIN		Pt	P0C421, P0C422. LOC_Osp1g00620. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46139: Nip093 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33976 (Japonica Group chloroplast genome). GU592207:ADD62853 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). X12695. psbF in Cote and Wu 1988.	 Biochemical character		LOC_Osp1g00620				GO:0009523 - photosystem II, GO:0050821 - protein stabilization, GO:0042301 - phosphate binding, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0015979 - photosynthesis		
14020	PETD	petD, OsPETD	_	cytochrome b6/f complex subunit IV, cytochrome b/f, cytochrome b6f complex subunit PetD			Pt	P0C318, P0C319. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46140: Nip099 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33978 (Japonica Group chloroplast genome). GU592207:ADD62854 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00650				GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0022904 - respiratory electron transport chain, GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0009767 - photosynthetic electron transport chain		
14021	RPOA	rope, rpoalpha, Rpoalpha, rope, RpoA	RNA POLYMERASE SUBUNIT A	RNA polymerase alpha chain, RNA polymerase alpha subunit	RNA POLYMERASE SUBUNIT A		Pt	P0C499, P0C500. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46141: Nip100 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33979 (Japonica Group chloroplast genome). GU592207:ADD62855 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00660				GO:0009536 - plastid, GO:0006351 - transcription, DNA-dependent, GO:0003899 - DNA-directed RNA polymerase activity, GO:0009295 - nucleoid, GO:0009507 - chloroplast, GO:0003677 - DNA binding		
14022	RPS11	rps11	RIBOSOMAL PROTEIN S11	ribosomal protein S11	RIBOSOMAL PROTEIN S11		Pt	P0C463, P0C464. LOC_Osp1g00670. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46142: Nip102 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33980 (Japonica Group chloroplast genome). GU592207:ADD62856 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00670				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0019843 - rRNA binding, GO:0009536 - plastid, GO:0009507 - chloroplast		
14023	RPL36	rpl36	RIBOSOMAL PROTEIN L36	ribosomal protein L36	RIBOSOMAL PROTEIN L36		Pt	AY522329: AAS46077 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46143: Nip104 (cultivar Nipponbare), AY522331 (isolate PA64S). GU592207:ADD62857 (Japonica chloroplast comlete genome).	 Other						GO:0005840 - ribosome, GO:0009536 - plastid		
14024	INFA	infA	_	translation initiation factor 1, initiation factor 1, translational initiation factor 1			Pt	P0C379, P0C380. LOC_Osp1g00690. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46144: Nip105 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33930 (Japonica Group chloroplast genome). GU592207:ADD62858 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00690				GO:0009507 - chloroplast, GO:0003743 - translation initiation factor activity, GO:0009536 - plastid		
14025	RPS8	rps8	RIBOSOMAL PROTEIN S8	ribosomal protein S8, chloroplastic 30S ribosomal protein S8	RIBOSOMAL PROTEIN S8		Pt	LOC_Osp1g00700. P0C493, P0C494. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46145 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33931 (Japonica Group chloroplast genome). GU592207:ADD62859 (Japonica chloroplast comlete genome). AU070441, AU174085. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Tolerance and resistance - Stress tolerance,  Other		LOC_Osp1g00700				GO:0009536 - plastid, GO:0006412 - translation, GO:0009507 - chloroplast, GO:0016020 - membrane, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0005840 - ribosome	TO:0000432 - temperature response trait	
14026	RPL14	rpl14	RIBOSOMAL PROTEIN L14	ribosomal protein L14	RIBOSOMAL PROTEIN L14		Pt	P0C439, P0C440. LOC_Osp1g00710. AY522329: AAS46080 (isolate 93-11 chloroplast comlete genome). X15901: CAA33932 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00710				GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0015934 - large ribosomal subunit, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
14027	RPL16	rpl16	RIBOSOMAL PROTEIN L16	ribosomal protein L16	RIBOSOMAL PROTEIN L16		Pt	P0C442, P0C443. LOC_Osp1g00720. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46146: Nip111 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33933 (Japonica Group chloroplast genome). GU592207:ADD62860 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00720				GO:0005840 - ribosome, GO:0019843 - rRNA binding, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
14028	RPS3	rps3	RIBOSOMAL PROTEIN S3	ribosomal protein S3	RIBOSOMAL PROTEIN S3		Pt	LOC_Osp1g00730. P0C484, P0C485. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46147: Nip115 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33934 (Japonica Group chloroplast genome). FJ908434-FJ908448 (wild rice species). GU592207:ADD62861 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00730				GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0016020 - membrane, GO:0015935 - small ribosomal subunit, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0009295 - nucleoid		
14029	RPL22	rpl22	RIBOSOMAL PROTEIN L22	ribosomal protein L22	RIBOSOMAL PROTEIN L22		Pt	LOC_Osp1g00740. P0C445, P0C446. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46148: Nip117 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33935 (Japonica Group chloroplast genome). GU592207:ADD62862 (Japonica chloroplast comlete genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00740				GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0015934 - large ribosomal subunit, GO:0006412 - translation		
14030	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Pt	P0C496, P0C497. AAS46084. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46149: Nip222 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33924 (Japonica Group chloroplast genome). GU592207: ADD62864 (Japonica chloroplast comlete genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00770				GO:0009507 - chloroplast, GO:0016020 - membrane, GO:0016740 - transferase activity, GO:0019843 - rRNA binding, GO:0006412 - translation, GO:0009451 - RNA modification, GO:0009536 - plastid, GO:0003735 - structural constituent of ribosome, GO:0015934 - large ribosomal subunit		
14031	RPL23	rpl23	RIBOSOMAL PROTEIN L23	ribosomal protein L23	RIBOSOMAL PROTEIN L23		Pt	LOC_Osp1g00780. P0C450, P0C451. AY522329: AAS46085 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46150 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33938 (Japonica Group chloroplast genome). GU592207: ADD62865 (Japonica chloroplast comlete genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00780				GO:0009507 - chloroplast, GO:0006412 - translation, GO:0000166 - nucleotide binding, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0009536 - plastid		
14032	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7	RIBOSOMAL PROTEIN S7		Pt	LOC_Osp1g00820. P0C490, P0C491. AY522329: AAS46086 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46151: Nip129 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33942 (Japonica Group chloroplast genome). GU592207: ADD62866 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). BA000029 (Nipponbare complete mitochondrial genome): BAC19857.	 Other		LOC_Osp1g00820				GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit, GO:0009579 - thylakoid, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0009536 - plastid, GO:0019843 - rRNA binding, GO:0016020 - membrane		
14033	RPS15	rps15	RIBOSOMAL PROTEIN S15	ribosomal protein S15	RIBOSOMAL PROTEIN S15		Pt	P0C469, P0C470. LOC_Osp1g00870. AY522329: AAS46087 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46152: Nip162 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901: CAA33948 (Japonica Group chloroplast genome). GU592207: ADD62867 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00870				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009570 - chloroplast stroma, GO:0005840 - ribosome, GO:0009536 - plastid		
14034	_	ORF56, ndhH	NADH DEHYDROGENASE SUBUNIT 7	NADH dehydrogenase subunit 7, NADH-plastoquinone oxidoreductase subunit 7	NADH DEHYDROGENASE SUBUNIT 7		Pt	P0C336, P0C337. LOC_Osp1g00970. AY522329: AAS46088 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46153: Nip164 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33949 (Japonica Group chloroplast genome). GU592207:ADD62868 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00970				GO:0051287 - NAD or NADH binding, GO:0048038 - quinone binding, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0006810 - transport, GO:0019684 - photosynthesis, light reaction, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor		
14035	NDHF	ndhF	NADH DEHYDROGENASE SUBUNIT 5	NADH dehydrogenase subunit 5, NADH dehydrogenase ND5, NADH dehydrogenase subunit F, NADH-plastoquinone oxidoreductase subunit 5, NADH-plastoquinone oxidoreductase subunit F	NADH DEHYDROGENASE SUBUNIT 5		Pt	P0C327, P0C328. LOC_Osp1g00880. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46154: Nip165 (cultivar Nipponbare), AY522331 (isolate PA64S). HE573524 (Oryza meridionalis), HE577878 (Oryza coarctata). X15901:CAA33950 (Japonica Group chloroplast genome). FJ908335-FJ908349 (wild rice species). GU592207:ADD62869 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00880				GO:0048038 - quinone binding, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0042773 - ATP synthesis coupled electron transport, GO:0006810 - transport, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane		
14036	RPL32	rpl32, ORF63	RIBOSOMAL PROTEIN L32	ribosomal protein L32	RIBOSOMAL PROTEIN L32		Pt	P0C453, P0C454. LOC_Osp1g00890. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46155: Nip166 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33951 (Japonica Group chloroplast genome). GU592207:ADD62870 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00890				GO:0009536 - plastid, GO:0015934 - large ribosomal subunit, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
14037	_	ORF321, ccsA	_	cytochrome c biogenesis protein, cytochrome c heme attachment protein, heme attachment protein			Pt	P0C376, P0C377. LOC_Osp1g00900. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46156: Nip168 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33952 (Japonica Group chloroplast genome). GU592207:ADD62871 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00900				GO:0008535 - respiratory chain complex IV assembly, GO:0017004 - cytochrome complex assembly, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane		
14038	NDHD	ndhD, NdhD, NDH4, NADH4	NADH DEHYDROGENASE SUBUNIT 4	NADH dehydrogenase subunit 4, NADH dehydrogenase ND4, NADH-plastoquinone oxidoreductase subunit 4, NADH-ubiquinone oxidoreductase chain	NADH DEHYDROGENASE SUBUNIT 4		Pt	P0C324, P0C325. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46157: Nip169 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33953 (Japonica Group chloroplast genome). GU592207:ADD62872 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00910				GO:0048038 - quinone binding, GO:0042773 - ATP synthesis coupled electron transport, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
14039	PSAC	psaC, OsPSAC	PHOTOSYSTEM I SUBUNIT VII	photosystem I subunit VII, PSI 9kDa protein, photosystem I subunit PsaC	PHOTOSYSTEM I SUBUNIT VII		Pt	P0C360, P0C361. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46158: Nip170 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33954 (Japonica Group chloroplast genome). GU592207:ADD62873 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00920				GO:0009522 - photosystem I, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0009535 - chloroplast thylakoid membrane, GO:0016491 - oxidoreductase activity, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0009536 - plastid		
14040	NDHE	ndhE	NADH DEHYDROGENASE SUBUNIT 4L	NADH dehydrogenase subunit 4L, NADH dehydrogenase ND4L, NADH-plastoquinone oxidoreductase subunit 4L	NADH DEHYDROGENASE SUBUNIT 4L		Pt	LOC_Osp1g00930. P0C333, P0C334. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46159: Nip171 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33955 (Japonica Group chloroplast genome). GU592207:ADD62874 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00930				GO:0042773 - ATP synthesis coupled electron transport, GO:0048038 - quinone binding, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0019684 - photosynthesis, light reaction		
14041	NDHG	ndhG	NADH DEHYDROGENASE SUBUNIT 6	NADH dehydrogenase subunit 6, NADH dehydrogenase ND6, NADH-plastoquinone oxidoreductase subunit 6	NADH DEHYDROGENASE SUBUNIT 6		Pt	LOC_Osp1g00940. P0C330, P0C331. AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46160: Nip172 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33908 (Japonica Group chloroplast genome). GU592207:ADD62875 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00940				GO:0048038 - quinone binding, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane		
14043	NDHH	ORF393, ndhH	NADH DEHYDROGENASE SUBUNIT 7	NADH dehydrogenase subunit 7, NADH dehydrogenase 49kDa protein, NADH-plastoquinone oxidoreductase subunit 7	NADH DEHYDROGENASE SUBUNIT 7		Pt	P0C336, P0C337. LOC_Osp1g00970. AY522329: AAS46097 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46162: Nip176 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33911 (Japonica Group chloroplast genome). GU592207:ADD62878 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00970				GO:0009536 - plastid, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, GO:0019684 - photosynthesis, light reaction, GO:0048038 - quinone binding, GO:0051287 - NAD or NADH binding, GO:0006810 - transport, GO:0009535 - chloroplast thylakoid membrane		
14044	RPS15	rps15	RIBOSOMAL PROTEIN S15	ribosomal protein S15	RIBOSOMAL PROTEIN S15		Pt	LOC_Osp1g00980. P0C469, P0C470. AY522329: AAS46098 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46163: Nip178  (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33912 (Japonica Group chloroplast genome). GU592207:ADD62879 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00980				GO:0009536 - plastid, GO:0009570 - chloroplast stroma, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome		
14045	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7	RIBOSOMAL PROTEIN S7		Pt	LOC_Osp1g01050. P0C490, P0C491.AY522329: AAS46099 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46164: Nip206 (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33919 (Japonica Group chloroplast genome). GU592207:ADD62880 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01050				GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0019843 - rRNA binding, GO:0015935 - small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0009536 - plastid, GO:0006412 - translation, GO:0009579 - thylakoid		
14046	RPL23	rpl23	RIBOSOMAL PROTEIN L23	ribosomal protein L23	RIBOSOMAL PROTEIN L23		Pt	LOC_Osp1g01090. P0C450, P0C451. AY522329: AAS46100 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46165: Nip215b (cultivar Nipponbare), AY522331 (isolate PA64S). X15901:CAA33923 (Japonica Group chloroplast genome). GU592207:ADD62882 (Japonica chloroplast comlete genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01090				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0019843 - rRNA binding, GO:0000166 - nucleotide binding, GO:0006412 - translation		
14047	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Pt	P0C496, P0C497. LOC_Osp1g01100. AY522329: AAS46101 (isolate 93-11 chloroplast comlete genome). X15901: CAA33928 (Japonica Group chloroplast genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01100				GO:0003735 - structural constituent of ribosome, GO:0009451 - RNA modification, GO:0016740 - transferase activity, GO:0016020 - membrane, GO:0015934 - large ribosomal subunit, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0019843 - rRNA binding, GO:0006412 - translation		
14048	_	OsMyoVIIIA, OsMyoVIIIA-1, OsMyoVIIIA-2	_	Myosin VIIIA, Myosin class VIII A			7	AY374513, AY374514. 		Os07g0562800	LOC_Os07g37560.1, LOC_Os07g37560.2, LOC_Os07g37560.3				GO:0005524 - ATP binding, GO:0016459 - myosin complex, GO:0003774 - motor activity		
14049	_	OsMyoXIE, OsMyoXIE-1, OsMyoXIE-2, OsMyoXIE-3	_	Myosin XIE, Myosin class XI E			3	AY374515, AY374516, AY374517. 		Os03g0747900	LOC_Os03g53660.1				GO:0003774 - motor activity, GO:0051645 - Golgi localization, GO:0051646 - mitochondrion localization, GO:0010089 - xylem development, GO:0060151 - peroxisome localization, GO:0005524 - ATP binding, GO:0016461 - unconventional myosin complex, GO:0009624 - response to nematode, GO:0030048 - actin filament-based movement, GO:0044036 - cell wall macromolecule metabolic process		
14050	_		_	U11 small nuclear RNA, U11 snRNA			2	BK005208.									
14052	CRTINTP	OsCRTintP, ANIP1, OsANIP1	CALRETICULIN INTERACTING PROTEIN	CRT interacting protein, calreticulin interacting protein, AVRPI9-INTERACTING PROTEIN 1	CALRETICULIN INTERACTING PROTEIN	anip1	7	AB078881. a ubiquitin-like nuclear protein. a rice ubiquitin-like domain-containing protein (UDP). GO:0062207: regulation of pattern recognition receptor signaling pathway. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os07g0498800	LOC_Os07g31540.1				GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
14053	_	SAMDC1, SAMDC, OsSAMDC4	_	S-adenosylmethionine decarboxylase 1			9	LOC_Os09g25625. AB122089. AU062686, AU166559, C28220, C97560. OsSAMDC4 in Chen et al. 2014 and Saha and Giri 2017.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0424300	LOC_Os09g25620.1, LOC_Os09g25620.2, LOC_Os09g25620.3, LOC_Os09g25620.4, LOC_Os09g25625.1				GO:0009651 - response to salt stress, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0008295 - spermidine biosynthetic process, GO:0006557 - S-adenosylmethioninamine biosynthetic process, GO:0006597 - spermine biosynthetic process, GO:0006596 - polyamine biosynthetic process	TO:0006001 - salt tolerance, TO:0000432 - temperature response trait	
14054	_	RAMY	_				1	A zinc-finger protein. AY072712.	 Other						GO:0006950 - response to stress		
14055	_	CDSP32	_	Thioredoxin CDSP32, Trx CDSP32			7	AM039890. Q84NN4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0476900	LOC_Os07g29410.1, LOC_Os07g29410.2				GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0009055 - electron carrier activity, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009941 - chloroplast envelope, GO:0045454 - cell redox homeostasis, GO:0006979 - response to oxidative stress, GO:0009570 - chloroplast stroma, GO:0009414 - response to water deprivation, GO:0006662 - glycerol ether metabolic process		
14056	TRXX	Trx x, OsTrx x, OsTrx16, Trx16	THIOREDOXIN X	Thioredoxin x, thioredoxin 16	THIOREDOXIN X		4	AM183298. Q7XKD0.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0676100	LOC_Os04g57930.1				GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0045454 - cell redox homeostasis, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma, GO:0015035 - protein disulfide oxidoreductase activity, GO:0009055 - electron carrier activity, GO:0008047 - enzyme activator activity, GO:0006833 - water transport, GO:0006662 - glycerol ether metabolic process, GO:0009750 - response to fructose stimulus	TO:0002657 - oxidative stress	
14057	CENP-C	OsCENP-C	CENTROMERE PROTEIN C	centromere protein C	CENTROMERE PROTEIN C		1	AY693783, AY693789.		Os01g0617700	LOC_Os01g43050.1				GO:0051382 - kinetochore assembly, GO:0019237 - centromeric DNA binding, GO:0051315 - attachment of spindle microtubules to kinetochore during mitosis, GO:0051455 - attachment of spindle microtubules to kinetochore during meiosis I, GO:0005634 - nucleus, GO:0000776 - kinetochore		
14058	ARC3	OsARC3	ACCUMULATION AND REPLICATION OF CHLOROPLAST 3	accumulation and replication of chloroplast, ARC3 homologue			9	a Chloroplast Division Factor. AB159444. GO:0035452: extrinsic to plastid membrane.	 Tolerance and resistance - Stress tolerance	Os09g0555600	LOC_Os09g38330.1				GO:0043234 - protein complex, GO:0051258 - protein polymerization, GO:0009414 - response to water deprivation, GO:0009707 - chloroplast outer membrane, GO:0010020 - chloroplast fission, GO:0009570 - chloroplast stroma, GO:0005525 - GTP binding	TO:0000276 - drought tolerance	
14059	CYTME2	OscytME2, cytME2	CYTOSOLIC NADP MALIC ENZYME 2	cytosolic NADP malic enzyme 2	CYTOSOLIC NADP MALIC ENZYME 2		5	AY435404, C26821, AU091724.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0186300	LOC_Os05g09440.1				GO:0051289 - protein homotetramerization, GO:0005618 - cell wall, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0051287 - NAD or NADH binding, GO:0004473 - malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, GO:0050897 - cobalt ion binding, GO:0009507 - chloroplast, GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0006108 - malate metabolic process, GO:0016619 - malate dehydrogenase (oxaloacetate-decarboxylating) activity, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance	
14060	_	OscytME3, OsEnS-13, NADP-ME, OsNADP-ME	_	cytosolic NADP malic enzyme 3, endosperm-specific gene 13	_		1	AY444338, CF321576.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0743500	LOC_Os01g54030.1				GO:0006108 - malate metabolic process, GO:0046872 - metal ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0051287 - NAD or NADH binding, GO:0016619 - malate dehydrogenase (oxaloacetate-decarboxylating) activity	TO:0000172 - jasmonic acid sensitivity	
14061	_	OsMTK2	_	Methylthioribose Kinase 2, MTR kinase 2			4	Q7XR60. CAE02820.	 Biochemical character	Os04g0669900	LOC_Os04g57410.1				GO:0005524 - ATP binding, GO:0019509 - methionine salvage, GO:0046522 - S-methyl-5-thioribose kinase activity		
14062	_	OsNAGK1, NAGK1	_	N-acetylglutamate kinase 1, N-acetyl glutamate kinase 1			4		 Biochemical character	Os04g0550500	LOC_Os04g46460.1, LOC_Os04g46460.2				GO:0003991 - acetylglutamate kinase activity, GO:0009507 - chloroplast, GO:0006561 - proline biosynthetic process, GO:0006526 - arginine biosynthetic process, GO:0004349 - glutamate 5-kinase activity		
14063	_	OsNAGK2, NAGK2	_	N-acetylglutamate kinase 2, N-acetyl glutamate kinase 2			2	AB183868.	 Biochemical character	Os02g0657600	LOC_Os02g44000.1				GO:0009507 - chloroplast, GO:0004349 - glutamate 5-kinase activity, GO:0003991 - acetylglutamate kinase activity, GO:0006561 - proline biosynthetic process, GO:0006526 - arginine biosynthetic process		
14064	_	OsGlnB	_				5	a bacterial PII-like protein. AB119279. Q6AUR2. GO:2000013: regulation of arginine biosynthetic process via ornithine.		Os05g0133100	LOC_Os05g04220.1, LOC_Os05g04220.2				GO:0006808 - regulation of nitrogen utilization, GO:0007030 - Golgi organization, GO:0009718 - anthocyanin biosynthetic process, GO:0009072 - aromatic amino acid family metabolic process, GO:0006816 - calcium ion transport, GO:0008652 - cellular amino acid biosynthetic process, GO:0009108 - coenzyme biosynthetic process, GO:0006546 - glycine catabolic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009695 - jasmonic acid biosynthetic process, GO:0009106 - lipoate metabolic process, GO:0009399 - nitrogen fixation, GO:0009117 - nucleotide metabolic process, GO:0006733 - oxidoreduction coenzyme metabolic process, GO:0050790 - regulation of catalytic activity, GO:0042304 - regulation of fatty acid biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009750 - response to fructose stimulus, GO:0009749 - response to glucose stimulus, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress, GO:0009744 - response to sucrose stimulus, GO:0019748 - secondary metabolic process, GO:0000096 - sulfur amino acid metabolic process, GO:0044272 - sulfur compound biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0006766 - vitamin metabolic process, GO:0009534 - chloroplast thylakoid, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0010307 - acetylglutamate kinase regulator activity, GO:0000287 - magnesium ion binding		
14065	_	OsAGPEP3	_	arabinogalactan peptide 3			5	A9UGV7. EU282464.		Os05g0541750					GO:0005773 - vacuole, GO:0031225 - anchored to membrane, GO:0032578 - aleurone grain membrane		
14066	APRL1	OsAPRL1, OsAPR1, APR1	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 1	adenosine 5'-phosphosulfate reductase-like protein 1	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 1		7	Q6Z4A7. AU100738 (C12491), AU197649 (S20244), AU197648 (S20244). OsAPR (adenosine 5'-phosphosulfate reductase).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0509800	LOC_Os07g32570.1, LOC_Os07g32570.2				GO:0000103 - sulfate assimilation, GO:0009570 - chloroplast stroma, GO:0009973 - adenylyl-sulfate reductase activity, GO:0019344 - cysteine biosynthetic process, GO:0019419 - sulfate reduction, GO:0042594 - response to starvation, GO:0045454 - cell redox homeostasis, GO:0046872 - metal ion binding, GO:0009970 - cellular response to sulfate starvation, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006790 - sulfur metabolic process, GO:0033741 - adenylyl-sulfate reductase (glutathione) activity, GO:0006950 - response to stress, GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity	TO:0000007 - sulfur sensitivity	
14068	QSOXL1	OsQSOXL1	QUIESCIN-SULFHYDRYL OXIDASE-LIKE PROTEIN 1	QSOX-like protein 1, quiescin-sulfhydryl oxidase-like protein 1	QUIESCIN-SULFHYDRYL OXIDASE-LIKE PROTEIN 1		5	Q6AUC6.	 Biochemical character	Os05g0552500	LOC_Os05g47930.1, LOC_Os05g47930.2, LOC_Os05g47930.3				GO:0045454 - cell redox homeostasis, GO:0005576 - extracellular region, GO:0016972 - thiol oxidase activity		
14069	APRL2	OsAPRL2	_ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 2	adenosine 5'-phosphosulfate reductase-like protein 2, Adenosine 5'-phosphosulfate reductase-like 2	_ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 2		6	AY739306. Q67VZ8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0220800	LOC_Os06g11740.1				GO:0003756 - protein disulfide isomerase activity, GO:0016021 - integral to membrane, GO:0045454 - cell redox homeostasis, GO:0016853 - isomerase activity, GO:0006457 - protein folding, GO:0034976 - response to endoplasmic reticulum stress, GO:0005783 - endoplasmic reticulum, GO:0046688 - response to copper ion, GO:0009408 - response to heat	TO:0000021 - copper sensitivity, TO:0000259 - heat tolerance	
14070	APRL3	OsAPRL3	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 3	adenosine 5'-phosphosulfate reductase-like protein 3	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 3		2	Q84P95. OsAPR (adenosine 5'-phosphosulfate reductase).	 Biochemical character	Os02g0754900	LOC_Os02g51850.1, LOC_Os02g51850.2				GO:0006790 - sulfur metabolic process, GO:0045454 - cell redox homeostasis, GO:0016853 - isomerase activity, GO:0016021 - integral to membrane		
14071	APRL4	OsAPRL4	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 4	adenosine 5'-phosphosulfate reductase-like protein 4	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 4		8	AY739307. Q5DJV7.	 Biochemical character	Os08g0412401	LOC_Os08g31814.1, LOC_Os08g31814.2				GO:0045454 - cell redox homeostasis, GO:0016021 - integral to membrane		
14072	APRL5	OsAPRL5	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 5	adenosine 5'-phosphosulfate reductase-like protein 5	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 5		3	Q84M47. OsAPR (adenosine 5'-phosphosulfate reductase). LOC_Os03g59170.	 Biochemical character	Os03g0806500	LOC_Os03g59170.1				GO:0045454 - cell redox homeostasis, GO:0006790 - sulfur metabolic process, GO:0016021 - integral to membrane		
14073	APRL6	OsAPRL6	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 6	adenosine 5'-phosphosulfate reductase-like protein 6	ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE-LIKE PROTEIN 6		12										
14074	IDI2	OsIDI2	IRON-DEFICIENCY-INDUCED PROTEIN 2	Fe-deficiency-induced protein 2, iron-deficiency-induced protein 2	IRON-DEFICIENCY-INDUCED PROTEIN 2		11	an alpha-subunit of eukaryotic initiation factor 2B (eIF2Ba)-like protein. eIF2B-like methylthioribose-1-phosphate isomerase. D24651, C71966, BR000390, BR000391. Q0ITU1. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0216900	LOC_Os11g11050.1				GO:0042594 - response to starvation, GO:0009506 - plasmodesma, GO:0010106 - cellular response to iron ion starvation, GO:0034224 - cellular response to zinc ion starvation, GO:0043085 - positive regulation of catalytic activity, GO:0000023 - maltose metabolic process, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0003743 - translation initiation factor activity, GO:0019509 - methionine salvage, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005851 - eukaryotic translation initiation factor 2B complex, GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity, GO:0019252 - starch biosynthetic process	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	
14075	DMAS2	OsDMAS2	DEOXYMUGINEIC ACID SYNTHASE 2	sativa deoxymugineic acid synthase2, Deoxymugineic acid synthase2, Deoxymugineic acid synthase 2, deoxymugineic acid synthase2	DEOXYMUGINEIC ACID SYNTHASE 2												
14076	_	OsARF1	_	ADP-ribosylation factor1													
14077	_	OsRIC1	_	GTP-binding protein OsRIC1													
14078	MDM1	MDM1	TRANSPOSON MITE MDM1	transposon MITE MDM1, transposon:MITE MDM1, MDM1 element, Transposable Element MDM1					 Other						GO:0032196 - transposition		
14079	LSD1	OsLSD1, OsLOL1, OsLSD1.1, LSD1.1	LESION SIMULATING DISEASE 1	zinc finger protein LSD1, LESION SIMULATING DISEASE1.1, LESION SIMULATING DISEASE 1.1	_		8	a rice (Oryza sativa) functional homolog of Arabidopsis LSD1. AY525368. Q0J7V9. OsLSD1 was re-designated as OsLOL1 because the function and sequence of this protein are more similar to LOL1 than to LSD1 (Wu et al. 2014). a C2C2-type zinc finger protein. OsLOL1 in Huang et al. 2015. one of the five AtLSD1 homologs in rice genome.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic	Os08g0159500 	LOC_Os08g06280.9, LOC_Os08g06280.1, LOC_Os08g06280.2, LOC_Os08g06280.3, LOC_Os08g06280.4, LOC_Os08g06280.7, LOC_Os08g06280.8				GO:0045595 - regulation of cell differentiation, GO:0005634 - nucleus, GO:0012501 - programmed cell death, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0009845 - seed germination, GO:0006915 - apoptosis, GO:0043069 - negative regulation of programmed cell death, GO:0009626 - plant-type hypersensitive response, GO:0009642 - response to light intensity, GO:0050832 - defense response to fungus, GO:0034051 - negative regulation of plant-type hypersensitive response, GO:0030154 - cell differentiation	TO:0000074 - blast disease, TO:0000295 - chlorophyll-b content, TO:0000063 - mimic response, TO:0000460 - light intensity sensitivity	PO:0007057 - 0 seed germination stage , PO:0005360 - aleurone layer 
14080	CPD	qUVR-10, OsPHR, PHR, OsCPD	CPD PHOTOLYASE	CPD photolyase, cyclobutane pyrimidine dimer photolyase, deoxyribodipyrimidine photolyase	CPD PHOTOLYASE		10	AB198743, AB198744. Q6F6A2. AB096003. AB099694. AB210109. a Class II DNA photolyase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0167600	LOC_Os10g08580.1				GO:0010224 - response to UV-B, GO:0003677 - DNA binding, GO:0000719 - photoreactive repair, GO:0006281 - DNA repair, GO:0005634 - nucleus, GO:0010332 - response to gamma radiation, GO:0034021 - response to silicon dioxide, GO:0000166 - nucleotide binding, GO:0009650 - UV protection, GO:0005739 - mitochondrion, GO:0003904 - deoxyribodipyrimidine photo-lyase activity	TO:0000031 - silicon sensitivity, TO:0000601 - UV-B light sensitivity	
14081	_	OsRPA32, RPA32, RPA2A	_	Replication protein A 32kDa subunit, RPA32kDa subunit, replication protein A 32 kDa subunit			2	AB037145, AU030219. Q6K9U2. LOC_Os02g58220. RPA2A in Shi et al. 2016.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0829100	LOC_Os02g58220.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0006310 - DNA recombination, GO:0010332 - response to gamma radiation		
14082	_	OsRPA14, RPA14, RPA3	_	Replication protein A 14kDa subunit, replication protein A 14kDa, single-stranded DNA binding complex subunit 3			1	AB111915. Q9SDK9. LOC_Os01g14980. RPA3 in Zhang et al. 2015. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0253600	LOC_Os01g14980.1, LOC_Os01g14980.2				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0007126 - meiosis, GO:0006260 - DNA replication, GO:0006310 - DNA recombination, GO:0006281 - DNA repair		
14083	_	Orysa;NAP1;1, OsNAP1_L1	_	nucleosome assembly protein 1-like protein 1, Nucleosome assembly protein 1;1, NAP1-like protein 1			6	AJ438611. B8B2R4, Q5VND6.		Os06g0149400	LOC_Os06g05660.1, LOC_Os06g05660.2, LOC_Os06g05660.3, LOC_Os06g05660.4, LOC_Os06g05660.5				GO:0009294 - DNA mediated transformation, GO:0005886 - plasma membrane, GO:0006289 - nucleotide-excision repair, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0046686 - response to cadmium ion, GO:0006334 - nucleosome assembly	TO:0000730 - mitotic cell cycle trait, TO:0000728 - cell cycle trait	
14084	_	Orysa;NAP1;2, OsNAP1_L2	_	nucleosome assembly protein 1-like protein 2, Nucleosome assembly protein 1;2, NAP1-like protein 2			5	AJ438612. B8AW64, Q53WK4.		Os05g0539700	LOC_Os05g46230.1				GO:0005886 - plasma membrane, GO:0006289 - nucleotide-excision repair, GO:0005737 - cytoplasm, GO:0003682 - chromatin binding, GO:0046686 - response to cadmium ion, GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0009294 - DNA mediated transformation	TO:0000730 - mitotic cell cycle trait, TO:0000728 - cell cycle trait	
14085	_	Orysa;NAP1;3, OsNAP1_L3	_	nucleosome assembly protein 1-like protein 3, Nucleosome assembly protein 1;3			1	AY830122. Q5MGA9, A2ZX50.		Os01g0711800	LOC_Os01g51450.1				GO:0006289 - nucleotide-excision repair, GO:0006334 - nucleosome assembly, GO:0009294 - DNA mediated transformation, GO:0046686 - response to cadmium ion, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0005886 - plasma membrane		
14086	IDHA	OsIDHa, ICDHc	ISOCITRATE DEHYDROGENASE SUBUNIT A	NAD-dependent isocitrate dehydrogenase a, isocitrate dehydrogenase	ISOCITRATE DEHYDROGENASE SUBUNIT A		1	AB189167. an isocitrate dehydrogenase (IDH) catalytic subunit.	 Biochemical character	Os01g0276100	LOC_Os01g16900.1, LOC_Os01g16900.2, LOC_Os01g16900.3				GO:0008270 - zinc ion binding, GO:0051287 - NAD or NADH binding, GO:0005524 - ATP binding, GO:0004449 - isocitrate dehydrogenase (NAD+) activity, GO:0000287 - magnesium ion binding, GO:0006099 - tricarboxylic acid cycle, GO:0009507 - chloroplast, GO:0006102 - isocitrate metabolic process		
14087	IDHC	OsIDHc;2, IDHc;2	ISOCITRATE DEHYDROGENASE SUBUNIT C	NAD-dependent isocitrate dehydrogenase c;2	ISOCITRATE DEHYDROGENASE SUBUNIT C		2	LOC_Os02g38200. AB189169. an isocitrate dehydrogenase (IDH) regulatory subunit.	 Biochemical character	Os02g0595500	LOC_Os02g38200.1				GO:0051287 - NAD or NADH binding, GO:0006102 - isocitrate metabolic process, GO:0006099 - tricarboxylic acid cycle, GO:0004449 - isocitrate dehydrogenase (NAD+) activity, GO:0000287 - magnesium ion binding, GO:0008270 - zinc ion binding		
14088	LAR	OsLAR	LEUCOANTHOCYANIDIN REDUCTASE	leucoanthocyanidin reductase	LEUCOANTHOCYANIDIN REDUCTASE		3	BN000704.	 Coloration - Anthocyanin,  Seed,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Coloration - Others	Os03g0259400	LOC_Os03g15360.1				GO:0009416 - response to light stimulus, GO:0010023 - proanthocyanidin biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0033788 - leucoanthocyanidin reductase activity, GO:0009651 - response to salt stress	TO:0000075 - light sensitivity, TO:0006001 - salt tolerance, TO:0000707 - pericarp color	PO:0009030 - carpel , PO:0009005 - root 
14089	_	p-SINE1-r461	_	transposon p-SINE1-r461				AB206042, AB206043 (Oryza rufipogon DNAs).	 Other						GO:0032196 - transposition		
14090	_	p-SINE1-r502	_	transposon p-SINE1-r502				AB206042, AB206043 (Oryza rufipogon DNAs),     AB206463 (Oryza sativa DNA).	 Other						GO:0032196 - transposition		
14091	GAD1	OsGAD1, GDC	GLUTAMATE DECARBOXYLASE 1	glutamate decarboxylase 1	GLUTAMATE DECARBOXYLASE 1		8	AB056060, AB056062.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Physiological traits - Taste	Os08g0465800 	LOC_Os08g36320.5, LOC_Os08g36320.4, LOC_Os08g36320.3, LOC_Os08g36320.1, LOC_Os08g36320.2				GO:0006536 - glutamate metabolic process, GO:0030170 - pyridoxal phosphate binding, GO:0009651 - response to salt stress, GO:0004351 - glutamate decarboxylase activity	TO:0006001 - salt tolerance, TO:0000087 - aroma	
14092	GAD2	OsGAD2	GLUTAMATE DECARBOXYLASE 2	glutamate decarboxylase 2	GLUTAMATE DECARBOXYLASE 2		4	AB056061, AB056063.	 Seed - Physiological traits - Taste,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0447800	LOC_Os04g37500.1				GO:0009651 - response to salt stress, GO:0006536 - glutamate metabolic process, GO:0030170 - pyridoxal phosphate binding, GO:0004351 - glutamate decarboxylase activity	TO:0006001 - salt tolerance, TO:0000087 - aroma	
14094	_	OsCIA	_	cold-induced anther protein			10	DQ116755.	 Tolerance and resistance - Stress tolerance	Os10g0159700	LOC_Os10g07210.1					TO:0000432 - temperature response trait	
14095	_	OsPBF1	_	beta-6 subunit of 20 S proteasome, 20 S proteasome beta-6 subunit, 20S proteasome beta6 subunit			9	O64464. AB014058.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0505600	LOC_Os09g32800.1				GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005839 - proteasome core complex, GO:0005886 - plasma membrane, GO:0009817 - defense response to fungus, incompatible interaction, GO:0051603 - proteolysis involved in cellular protein catabolic process, GO:0004298 - threonine-type endopeptidase activity	TO:0000432 - temperature response trait	
14096	_		_	40 S ribosomal protein S12E, Ribosomal protein S12			7	D15650. 40 S ribosomal protein S12E in Imin et al. 2006.	 Tolerance and resistance - Stress tolerance	Os07g0229900 	LOC_Os07g12650.1				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation	TO:0000432 - temperature response trait	
14097	_		_	Osmotin protein homologue			11	AAX95344.	 Tolerance and resistance - Stress tolerance	Os11g0703000	LOC_Os11g47670.1					TO:0000432 - temperature response trait	
14098	_	RMtATP6	_	mitochondrial ATP synthase 6 kDa subunit			3	AB055076.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0606200	LOC_Os03g40920.1						
14099	_	RMtATPb, atpB, AtpB	_	"mitochondrial ATP synthase b, \"mitochondrial ATP synthase complex, beta subunit\", mitochondrial F1-ATPase beta subunit, H+-transporting ATP synthase beta chain, beta subunit of ATP synthase, ATP synthase beta subunit"			5	D10491. D15470. Q01859.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0553000	LOC_Os05g47980.1				GO:0005524 - ATP binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0008266 - poly(U) RNA binding, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0015986 - ATP synthesis coupled proton transport, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0046686 - response to cadmium ion, GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), GO:0005747 - mitochondrial respiratory chain complex I, GO:0006979 - response to oxidative stress, GO:0008270 - zinc ion binding, GO:0009941 - chloroplast envelope, GO:0009408 - response to heat, GO:0050897 - cobalt ion binding, GO:0009409 - response to cold, GO:0005507 - copper ion binding	TO:0000180 - spikelet fertility, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
14100	_	RMtATPd1	_	mitochondrial ATP synthase d1			7		 Biochemical character	Os07g0495200	LOC_Os07g31300.1				GO:0046686 - response to cadmium ion, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0007030 - Golgi organization, GO:0009266 - response to temperature stimulus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0006833 - water transport, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0009060 - aerobic respiration, GO:0006096 - glycolysis, GO:0006972 - hyperosmotic response, GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), GO:0006098 - pentose-phosphate shunt, GO:0009853 - photorespiration, GO:0080129 - proteasome core complex assembly, GO:0008270 - zinc ion binding, GO:0051788 - response to misfolded protein, GO:0009651 - response to salt stress, GO:0015986 - ATP synthesis coupled proton transport		
14101	_	RMtATPd2, OsMtATPd2, MtATPd2	_	mitochondrial ATP synthase d2			8		 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0478200	LOC_Os08g37320.1				GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0009651 - response to salt stress, GO:0009853 - photorespiration, GO:0005507 - copper ion binding, GO:0015986 - ATP synthesis coupled proton transport, GO:0051788 - response to misfolded protein, GO:0080129 - proteasome core complex assembly, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0009535 - chloroplast thylakoid membrane, GO:0022626 - cytosolic ribosome, GO:0050832 - defense response to fungus, GO:0005774 - vacuolar membrane, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0005730 - nucleolus, GO:0005886 - plasma membrane	TO:0000074 - blast disease	
14102	NAD1	nad1, Osnad1, nadI, nadIB	NADH DEHYDROGENASE SUBUNIT 1	NADH dehydrogenase subunit 1	NADH DEHYDROGENASE SUBUNIT 1		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99377 (cultivar Nipponbare), DQ167807 (isolate PA64S). AY507930, AY507931, AY507932, AY507937, AY507934, AY507938 (O. sativa and other wild rice species). AY792569-AY792571 (wild rice species). BA000029: BAC19852 (Nipponbare complete mitochondrial genome). JN861111:AER13032, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03746 (indica IR6888 complete mitochondrial genome). AJ278413 (intron 1).	 Biochemical character						GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion, GO:0016021 - integral to membrane		
14103	NAD5	nad5, OsNAD5	NADH DEHYDROGENASE SUBUNIT 5	NADH dehydrogenase subunit 5	NADH DEHYDROGENASE SUBUNIT 5		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99387 (cultivar Nipponbare), DQ167807 (isolate PA64S). D50565, D50566. BA000029: BAC19856 (Nipponbare complete mitochondrial genome). JN861111:AER12987, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome).  JF281153: AEZ03742 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005743 - mitochondrial inner membrane, GO:0016021 - integral to membrane, GO:0042773 - ATP synthesis coupled electron transport, GO:0005739 - mitochondrion		
14104	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7	RIBOSOMAL PROTEIN S7		Mt	LOC_Osm1g00140. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99347 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19857 (Nipponbare complete mitochondrial genome). JN861111:AER13025 (indica Hassawi complete mitochondrial genome). JF281153: AEZ03756 (indica IR6888 complete mitochondrial genome).	 Other		LOC_Osm1g00140				GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit, GO:0006412 - translation, GO:0005739 - mitochondrion		
14105	_	orf490	_				Mt	LOC_Osm1g00150. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99382 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19858 (Nipponbare complete mitochondrial genome). JN861111:AER12982, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03755 (indica IR6888 complete mitochondrial genome). 			LOC_Osm1g00150				GO:0005739 - mitochondrion		
14106	_	orfB, atp8	_	ATPase subunit 8			Mt	LOC_Osm1g00170. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99386 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19860 (Nipponbare complete mitochondrial genome). JN861111: AER13023, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03753 (indica IR6888 complete mitochondrial genome). atp8 in JF281153.	 Biochemical character		LOC_Osm1g00170				GO:0005773 - vacuole, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0015986 - ATP synthesis coupled proton transport, GO:0050897 - cobalt ion binding, GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, GO:0005739 - mitochondrion, GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0009507 - chloroplast, GO:0016021 - integral to membrane		
14107	_	orf181	_				Mt	BAC19861. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99373 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19861 (Nipponbare complete mitochondrial genome). JN861111: AER13009, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03752 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
14108	NAD6	nad6	NADH DEHYDROGENASE SUBUNIT 6	NADH dehydrogenase subunit 6	NADH DEHYDROGENASE SUBUNIT 6		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99371 (cultivar Nipponbare), DQ167807 (isolate PA64S). D64067 (partial). BA000029: BAC19862 (Nipponbare complete mitochondrial genome). AB763980, AB763986. JN861111: AER13003, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03751 (indica IR6888 complete mitochondrial genome). 	 Biochemical character		LOC_Osm1g00190				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion, GO:0045271 - respiratory chain complex I, GO:0016021 - integral to membrane		
14109	CCMC	ccmC, orf240	CYTOCHROME C BIOGENESIS C	cytochrome c biogenesis C	CYTOCHROME C BIOGENESIS C		Mt	LOC_Osm1g00200. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99374 (cultivar Nipponbare), DQ167807 (isolate PA64S). D64067. BA000029: BAC19863 (Nipponbare complete mitochondrial genome). JN861111: AER12999, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03750 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00200				GO:0005739 - mitochondrion, GO:0017004 - cytochrome complex assembly, GO:0015232 - heme transporter activity, GO:0016020 - membrane, GO:0008535 - respiratory chain complex IV assembly		
14110	_	orf183	_				Mt	LOC_Osm1g00210. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99365 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19864 (Nipponbare complete mitochondrial genome). JN861111: AER13012, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03749 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00210				GO:0016021 - integral to membrane, GO:0005739 - mitochondrion, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
14111	ORFX	orfX	_				Mt	LOC_Osm1g00220. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99358 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19865 (Nipponbare complete mitochondrial genome). JN861111: AER12995, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03748 (indica IR6888 complete mitochondrial genome).			LOC_Osm1g00220				GO:0016021 - integral to membrane, GO:0005739 - mitochondrion		
14112	NAD7	nad7	NADH DEHYDROGENASE SUBUNIT 7	NADH dehydrogenase subunit 7	NADH DEHYDROGENASE SUBUNIT 7		Mt	LOC_Osm1g00230. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99383 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19866 (Nipponbare complete mitochondrial genome). JN861111:AER13024, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153:AEZ03747 (indica IR6888 complete mitochondrial genome). AJ278408 (intron 3), AJ278410 (intron 4). 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character		LOC_Osm1g00230				GO:0016651 - oxidoreductase activity, acting on NADH or NADPH, GO:0005739 - mitochondrion, GO:0051287 - NAD or NADH binding, GO:0048038 - quinone binding	TO:0000437 - male sterility	
14113	_	orf25, atp4	_	ATPase subunit 4			Mt	LOC_Osm1g00120. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99368 (cultivar Nipponbare), DQ167807 (isolate PA64S). M74241. Q00058. BA000029: BAC19854 (Nipponbare complete mitochondrial genome). JN861111:AER13008, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03744 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19854 and DQ167400: AAZ99368 (JN861111, JN861112, JF281153) are in conflict. atp4 in JF281153. 	 Biochemical character		LOC_Osm1g00120				GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0008270 - zinc ion binding, GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0016021 - integral to membrane, GO:0005739 - mitochondrion		
14114	_	orf152a, orf152b	_				Mt	LOC_Osm1g00130. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99342 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19855 (Nipponbare complete mitochondrial genome). JN861111: AER13020, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03743 (indica IR6888 complete mitochondrial genome). orf152b in JF281153. The locations of BA000029: BAC19855 and DQ167400: AAZ99342 (JN861111, JN861112, JF281153) are in conflict. 			LOC_Osm1g00130				GO:0005739 - mitochondrion		
14115	RPS3	rps3	RIBOSOMAL PROTEIN S3	ribosomal protein S3	RIBOSOMAL PROTEIN S3		Mt	LOC_Osm1g00260. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99355 (cultivar Nipponbare), DQ167807 (isolate PA64S). D21251. P46773. S68845 (intron). BA000029: BAC19869 (Nipponbare complete mitochondrial genome). JN861111: AER12981, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AAZ99355 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19869 (DQ167400: AAZ99355) and JN861111: AER12981 (JF281153: AAZ99355) are in conflict.	 Other		LOC_Osm1g00260				GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003723 - RNA binding		
14116	RPL16	rpl16, pseudo-rpl16	RIBOSOMAL PROTEIN L16	ribosomal protein L16	RIBOSOMAL PROTEIN L16		Mt	LOC_Osm1g00270. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99348 (cultivar Nipponbare), DQ167807 (isolate PA64S). D21251. P46801. BA000029 (Nipponbare complete mitochondrial genome). JN861111: AER13007, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). pseudogene (pseudo-rpl16) in BA000029 and JF281153. The loactions of DQ167400: AAZ99348 (BA000029: pseudo-rpl16) and JN861111: AER13007 (JF281153: rpl16 (pseudo)) are in conflict.	 Other		LOC_Osm1g00270				GO:0005739 - mitochondrion, GO:0019843 - rRNA binding, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
14117	NAD3	nad3	NADH DEHYDROGENASE SUBUNIT 3	NADH dehydrogenase subunit 3	NADH DEHYDROGENASE SUBUNIT 3		Mt	LOC_Osm1g00280. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99360 (cultivar Nipponbare), DQ167807 (isolate PA64S). M57904. D21251. BA000029: BAC19871 (Nipponbare complete mitochondrial genome). JN861111: AER13033, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03699 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19871 (DQ167400: AAZ99360) and JN861111: AER13033 (JF281153: AEZ03699) are in conflict.	 Biochemical character		LOC_Osm1g00280				GO:0005747 - mitochondrial respiratory chain complex I, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion		
14118	RPS12	rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Mt	LOC_Osm1g00290. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99353 (cultivar Nipponbare), DQ167807 (isolate PA64S). M57904. P28520. D21251. BA000029: BAC19872 (Nipponbare complete mitochondrial genome). JN861111: AER13027, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153:AEZ03700 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19872 (DQ167400: AAZ99353) and JN861111: AER13027 (JF281153: AEZ03700) are in conflict.	 Other		LOC_Osm1g00290				GO:0015935 - small ribosomal subunit, GO:0005739 - mitochondrion, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
14119	_	orf224, orf224a, orf224b	_				Mt	LOC_Osm1g00300. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99350 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19873 (Nipponbare complete mitochondrial genome). JN861111:AEZ03701, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03701 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19873 (DQ167400: AAZ99350) and JN861111:AEZ03701 (JF281153: AEZ03701) are in conflict.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00300				GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0015986 - ATP synthesis coupled proton transport, GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0005739 - mitochondrion		
14120	RPS2	rps2, orf483	RIBOSOMAL PROTEIN S2	ribosomal protein S2	RIBOSOMAL PROTEIN S2		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99356 (cultivar Nipponbare), DQ167807 (isolate PA64S). D32052: BAA06825. BA000029: BAC19874 (Nipponbare complete mitochondrial genome). JN861111: AEZ03702, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19874 (DQ167400: AAZ99356) and JN861111: AEZ03702 are in conflict.	 Other		LOC_Osm1g00310				GO:0003735 - structural constituent of ribosome, GO:0005739 - mitochondrion, GO:0006412 - translation, GO:0015935 - small ribosomal subunit		
14121	NAD4	nad4, nadIV	NADH DEHYDROGENASE SUBUNIT 4	NADH dehydrogenase subunit 4	NADH DEHYDROGENASE SUBUNIT 4		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99378 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19875 (Nipponbare complete mitochondrial genome). AB763979, AB763985. JN861111: AER13014, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03738 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00320				GO:0005739 - mitochondrion, GO:0045271 - respiratory chain complex I, GO:0042773 - ATP synthesis coupled electron transport, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
14122	_	cox2, coxII	_	cytochrome oxidase subunit 2, cytochrome oxidase subunit II, Cytochrome c oxidase subunit 2			Mt	LOC_Osm1g00330. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99344 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19876 (Nipponbare complete mitochondrial genome). JN861111: AER13026, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03737 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00330				GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0004129 - cytochrome-c oxidase activity, GO:0005507 - copper ion binding, GO:0005743 - mitochondrial inner membrane, GO:0022900 - electron transport chain, GO:0070469 - respiratory chain		
14123	_	orf152b, orf152b-1, orf152	_				Mt	LOC_Osm1g00350. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99341 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19878 (Nipponbare complete mitochondrial genome). JN861111:AER13021, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03735 (indica IR6888 complete mitochondrial genome). orf152b-1 in JN861111 and JN861112. orf152 in JF281153. The location of orf152b in DQ167399 is in conflict.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00350				GO:0005739 - mitochondrion		
14124	_	atp6, N-atp6, B-ATP6, B-atp6, atp6-1	_	ATP synthase F0 subunit 6, ATPase subunit 6, N-ATPASE SUBUNIT 6, B-ATPASE SUBUNIT 6, ATPase subunit 6			Mt	LOC_Osm1g00370. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99389 (cultivar Nipponbare), DQ167807 (isolate PA64S). S59890, S59393. X52161, X52162. X52160 (urf-rmc, chimeric atp6). D14339. KC188737, KC188738. AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19880 (Nipponbare complete mitochondrial genome). JN861111: AER12990, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03734 (indica IR6888 complete mitochondrial genome). atp6-1 in JN861111 and JN861112.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00370				GO:0005743 - mitochondrial inner membrane, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0016787 - hydrolase activity, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0015986 - ATP synthesis coupled proton transport		
14125	_	orf176, orf173	_				Mt	LOC_Osm1g00420. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99345 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19884 (Nipponbare complete mitochondrial genome). JN861111: AER13013, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03704 (indica IR6888 complete mitochondrial genome). orf173 in JF281153. The locations of BA000029: BAC19884 (DQ167400: AAZ99345) and JN861111: AER13013 (JF281153: AEZ03704) are in conflict.			LOC_Osm1g00420				GO:0005739 - mitochondrion		
14126	_	orf161	_				Mt	LOC_Osm1g00340. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99367 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19877 (Nipponbare complete mitochondrial genome). JN861111: AER13015, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03736 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19877 and DQ167400: AAZ99367 are in conflict.			LOC_Osm1g00340				GO:0005739 - mitochondrion		
14127	_	orf187, orf187-1	_				Mt	LOC_Osm1g00360. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99343 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19879 (Nipponbare complete mitochondrial genome). JN861111: AER13043, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). orf187-1 in JN861111 and JN861112.The locations of BA000029: BAC19879 and DQ167400: AAZ99343 are in conflict.			LOC_Osm1g00360				GO:0005739 - mitochondrion		
14128	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Mt	LOC_Osm1g00440. P92812, P0C8K6, Q2F969. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99354 (cultivar Nipponbare), DQ167807 (isolate PA64S). D78336. BA000029: BAC19886 (Nipponbare complete mitochondrial genome). JF281153:AEZ03727 (indica IR6888 complete mitochondrial genome). AB763981, AB763987. JN861111: AER12994, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19886 (DQ167400: AAZ99354, JF281153:AEZ03727) and JN861111: AER12994 are in conflict.	 Other		LOC_Osm1g00440				GO:0006412 - translation, GO:0006354 - RNA elongation, GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009451 - RNA modification, GO:0009853 - photorespiration, GO:0016740 - transferase activity, GO:0051788 - response to misfolded protein, GO:0080129 - proteasome core complex assembly, GO:0015934 - large ribosomal subunit, GO:0003723 - RNA binding		
14129	RPS19	rps19	RIBOSOMAL PROTEIN S19	ribosomal protein S19	RIBOSOMAL PROTEIN S19		Mt	LOC_Osm1g00450. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99372 (cultivar Nipponbare), DQ167807 (isolate PA64S). D78336. BA000029: BAC19887 (Nipponbare complete mitochondrial genome). JF281153: AEZ03726 (indica IR6888 complete mitochondrial genome). JN861111: AER13029, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19887 (DQ167400: AAZ99372, JF281153: AEZ03726) and JN861111: AER13029 are in conflict.	 Other		LOC_Osm1g00450				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005763 - mitochondrial small ribosomal subunit, GO:0003723 - RNA binding, GO:0006354 - RNA elongation, GO:0005739 - mitochondrion, GO:0000166 - nucleotide binding		
14130	NAD4L	nad4L	NADH DEHYDROGENASE SUBUNIT 4L	NADH dehydrogenase subunit 4L	NADH DEHYDROGENASE SUBUNIT 4L		Mt	LOC_Osm1g00460. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99364 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19888 (Nipponbare complete mitochondrial genome). JF281153: AEZ03725 (indica IR6888 complete mitochondrial genome). JN861111: AER13030, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19888 (DQ167400: AAZ99364, JF281153: AEZ03725) and JN861111: AER13030 are in conflict.	 Biochemical character		LOC_Osm1g00460				GO:0005739 - mitochondrion, GO:0016651 - oxidoreductase activity, acting on NADH or NADPH, GO:0042773 - ATP synthesis coupled electron transport		
14131	GSLm	orf241, OsGSLm, OsGSLmt, GSLmt	BETA-1,3-GLUCANASE ACTIVITY M	Oryza sativa callose synthase m, callose synthase m			Mt	LOC_Osm1g00470. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99357 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19889 (Nipponbare complete mitochondrial genome). JF281153: AEZ03724 (indica IR6888 complete mitochondrial genome). JN861111: AER12998, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19889 (DQ167400: AAZ99357, JF281153: AEZ03724) and JN861111: AER12998 are in conflict.	 Biochemical character		LOC_Osm1g00470				GO:0000148 - 1,3-beta-glucan synthase complex, GO:0005739 - mitochondrion, GO:0006075 - 1,3-beta-glucan biosynthetic process, GO:0003843 - 1,3-beta-glucan synthase activity		
14132	_	mat-r, mat-r-1	_	maturase-related protein			Mt	LOC_Osm1g00490. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99385 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19891 (Nipponbare complete mitochondrial genome). AB763978, AB763984. JN861111: AER12976, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03722 (indica IR6888 complete mitochondrial genome). mat-r-1 in JN861111 and JN861112.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character		LOC_Osm1g00490				GO:0003723 - RNA binding, GO:0005739 - mitochondrion, GO:0006397 - mRNA processing, GO:0006278 - RNA-dependent DNA replication, GO:0003964 - RNA-directed DNA polymerase activity	TO:0000437 - male sterility	
14133	RPS1	rps1, rps1a, rps1b, rps1-1	RIBOSOMAL PROTEIN S1	ribosomal protein S1	RIBOSOMAL PROTEIN S1		Mt	LOC_Osm1g00500. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99361 (cultivar Nipponbare), DQ167807 (isolate PA64S). AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19892 (Nipponbare complete mitochondrial genome). JN861111: AER13042, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03722 (indica IR6888 complete mitochondrial genome). rps1-1 in JN861111 and JN861112.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00500				GO:0005840 - ribosome, GO:0005739 - mitochondrion		
14134	_	ccmFn, ccmFn-1	_	cytochrome c biogenesis Fn			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99384 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19893 (Nipponbare complete mitochondrial genome). AB763976, AB763977, AB763982, AB763983. JN861111: AER12978, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03718 (indica IR6888 complete mitochondrial genome). ccmFn-1 in JN861111 and JN861112.	 Biochemical character		LOC_Osm1g00510				GO:0008535 - respiratory chain complex IV assembly, GO:0005739 - mitochondrion, GO:0016020 - membrane, GO:0017004 - cytochrome complex assembly, GO:0015232 - heme transporter activity		
14135	_	ccmFc, ccmFc-1	_	cytochrome c biogenesis Fc			Mt	LOC_Osm1g00520. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99362 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19894 (Nipponbare complete mitochondrial genome). JN861111: AER12996, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03717 (indica IR6888 complete mitochondrial genome). ccmFc-1 in JN861111 and JN861112.			LOC_Osm1g00520				GO:0016021 - integral to membrane, GO:0005739 - mitochondrion		
14136	_	orf165, orf165-1	_				Mt	LOC_Osm1g00540. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99375 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19895 (Nipponbare complete mitochondrial genome). JN861111: AER13018, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03715 (indica IR6888 complete mitochondrial genome). orf165-1 in JN861111 and JN861112.			LOC_Osm1g00540				GO:0005739 - mitochondrion		
14137	_	orf284, orf284-1	_				Mt	LOC_Osm1g00530. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99359 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19896 (Nipponbare complete mitochondrial genome). JN861111: AER12992, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03714 (indica IR6888 complete mitochondrial genome). orf284-1 in JN861111 and JN861112.			LOC_Osm1g00530				GO:0005739 - mitochondrion		
14138	_	orf173, orf173-2	_				Mt	JN861111: AER13011, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). orf173-2 in JN861111, JN861112.							GO:0005739 - mitochondrion		
14139	_	orf162, orf162-2	_				Mt	DQ167807 (isolate PA64S). JN861111:AER13038, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). orf162-2 in JN861111 and JN861112.							GO:0005739 - mitochondrion		
14140	_	ccmB	_	cytochrome c biogenesis B			Mt	LOC_Osm1g00620. BA000029: BAC19903 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99363 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111:AER13000, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03761 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19903 (DQ167400: AAZ99363), JN861111: AER13000 and JF281153: AEZ03761 are in conflict.	 Biochemical character		LOC_Osm1g00620				GO:0017004 - cytochrome complex assembly, GO:0015232 - heme transporter activity, GO:0005739 - mitochondrion, GO:0016020 - membrane		
14141	_	orf160, orf160b	_				Mt	LOC_Osm1g00630. BA000029: BAC19904 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99351 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER13016, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03759 (indica IR6888 complete mitochondrial genome). The locations of BA000029: BAC19904 (DQ167400: AAZ99351), JN861111: AER13016 and JF281153: AEZ03759 are in conflict. orf160b in JF281153.			LOC_Osm1g00630				GO:0005739 - mitochondrion		
14142	NAD2	nad2, OsNAD2	NADH DEHYDROGENASE SUBUNIT 2	NADH dehydrogenase subunit 2	NADH DEHYDROGENASE SUBUNIT 2		Mt	LOC_Osm1g00640 (exon1-exon2 part).  DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99392 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19905 (Nipponbare complete mitochondrial genome). JF281153: AEZ03758 (indica IR6888 complete mitochondrial genome).  JN861111: AAZ99392, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The locations of BA000029: BAC19905, DQ167400:AAZ99392, JN861111: AAZ99392 and  JF281153: AEZ03758 are in conflict.	 Biochemical character		LOC_Osm1g00640				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0005739 - mitochondrion, GO:0042773 - ATP synthesis coupled electron transport		
14143	_	atp1, atp1-2	_	ATP synthase F0 subunit 1			Mt	P0C521, P0C522. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99349 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER12984, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). atp1-2 in JN861111 and JN861112.	 Biochemical character						GO:0005507 - copper ion binding, GO:0006979 - response to oxidative stress, GO:0005739 - mitochondrion, GO:0005618 - cell wall, GO:0005524 - ATP binding, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0008266 - poly(U) RNA binding, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0005773 - vacuole, GO:0015986 - ATP synthesis coupled proton transport, GO:0005730 - nucleolus, GO:0005743 - mitochondrial inner membrane, GO:0005886 - plasma membrane, GO:0008270 - zinc ion binding, GO:0009941 - chloroplast envelope, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0009451 - RNA modification, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0050897 - cobalt ion binding		
14144	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (AB076665 and AB076666 -> replaced by BA000029, Nipponbare complete mitochondrial genome). 									
14145	_	trnM(CAT), trnM	_	tRNA-Met			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome).									
14146	_	trnH(GTG), trnH	_	tRNA-His			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13101 (a transferred chloroplast DNA sequence). 									
14147	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). pseudo gene (pseudo-trnP) in BA000029. D13102 (a transferred chloroplast DNA sequence).									
14148	_	trnW(CCA), trnW	_	tRNA-Trp			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13102 (a transferred chloroplast DNA sequence).									
14149	_	trnQ(TTG), trnQ	_	tRNA-Gln			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14150	_	trnM(CAT), trnM	_	tRNA-Met			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). The location of trnM(CAT) in DQ167399 is in conflict.									
14151	_	trnL(AAC), trnL	_	tRNA-Leu			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S).									
14152	_	trnI, pseudo-trnI	_	tRNA-Ile, tRNA-Ile pseudogene			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D13106 (a transferred chloroplast DNA sequence). D64067. BA000029 (Nipponbare complete mitochondrial genome). pseudo gene (pseudo-trnI) in BA000029.									
14153	_	trnI(CAT), trnI	_	tRNA-Ile			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14154	_	trnD(GTC), trnD	_	tRNA-Asp			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14155	_	trnN(GTT), trnN	_	tRNA-Asn, chloroplast-like tRNA-Asn			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13107 (a transferred chloroplast DNA sequence). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14156	_	trnK(TTT), trnK	_	tRNA-Lys			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14157	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14158	_	trnM(CAT), trnM	_	tRNA-Met			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14159	_	trnH(GTG), trnH	_	tRNA-His			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14160	_	trnP(TGG), trnP	_	tRNA-Pro			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14161	_	trnW(CCA), trnW	_	tRNA-Trp			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14162	_	trnQ(TTG), trnQ	_	tRNA-Gln			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S).									
14163	_	trnfM(CAT), trnfM	_	tRNA-Met, initiator methionine tRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D32052. BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400 ): trnfM and JN861111 (JF281153 ): trnfM are in conflict.									
14164	_	trnS(TGA), trnS	_	tRNA-Ser			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400): trnS and JN861111 (JF281153): trnS are in conflict.									
14165	_	trnS(GCT), trnS	_	tRNA-Ser			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). M57903. BA000029 (Nipponbare complete mitochondrial genome). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14166	_	trnC(GCA), trnC	_	tRNA-Cys			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14167	_	trnF(GAA), trnF	_	tRNA-Phe			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14168	_	trnY(GTA), trnY	_	tRNA-Tyr			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14169	_	trnE(TTC), trnE	_	tRNA-Glu			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
14170	_	trnC(GCA), trnC	_	tRNA-Cys			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400):trnC, JN861111:trnC and JF281153:trnC are in conflict.									
14171	_	trnR(TCT), trnR	_	tRNA-Arg			Mt	BA000029 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D13099 (a transferred chloroplast DNA sequence). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029 (DQ167400):trnR, JN861111:trnR and JF281153:trnR are in conflict.									
14172	_	trnS(GGA), trnS	_	tRNA-Ser			Mt	BA000029 (Nipponbare complete mitochondrial genome). D13112 (a transferred chloroplast DNA sequence). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). 									
14173	_	trnF(GAA), trnF	_	tRNA-Phe			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome). D13112 (a transferred chloroplast DNA sequence). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome). 									
14174	_	trnY(GTA), trnY	_	tRNA-Tyr			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14175	_	trnE(TTC), trnE	_	tRNA-Glu			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
14176	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S ribosomal RNA, 5S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14177	26S  rRNA	rrn26	26S RIBOSOMAL RNA	26S ribosomal RNA, 26S rRNA			Mt	BA000029 (Nipponbare complete mitochondrial genome). AB763989, AB763991. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). D37988. JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14178	_	OsSrx	_	sulfiredoxin			6	DQ132851.	 Biochemical character	Os06g0174300	LOC_Os06g07760.1				GO:0003677 - DNA binding, GO:0032542 - sulfiredoxin activity, GO:0006979 - response to oxidative stress, GO:0005739 - mitochondrion		
14179	_	PHYLLO	_	chloroplast phylloquinone biosynthesis protein				BK005797.	 Biochemical character						GO:0016836 - hydro-lyase activity, GO:0009063 - cellular amino acid catabolic process, GO:0009234 - menaquinone biosynthetic process, GO:0030976 - thiamin pyrophosphate binding, GO:0000287 - magnesium ion binding, GO:0070204 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity		
14182	_	OsCHR719	_					an SNF2 ATPase.	 Biochemical character								
14183	_	OsARFA1a, ARFA1a	_	ADP-ribosylation factor 4, ADP-ribosylation factor A1a			1	chilling tolerance related protein. D10859. Q06396. D22997 (replaced by C98347). LOC_Os01g59790. OsARFA1a in Muthamilarasan et al. 2016.	 Tolerance and resistance - Stress tolerance	Os01g0813400	LOC_Os01g59790.1, LOC_Os01g59790.2, LOC_Os01g59790.3				GO:0005794 - Golgi apparatus, GO:0005886 - plasma membrane, GO:0016192 - vesicle-mediated transport, GO:0015031 - protein transport, GO:0005507 - copper ion binding, GO:0005525 - GTP binding, GO:0046686 - response to cadmium ion, GO:0005773 - vacuole, GO:0007264 - small GTPase mediated signal transduction		
14184	DER1	OsDER1	DERLIN 1	DERLIN-like protein 1	DERLIN 1		5	LOC_Os05g09550. a homolog of yeast and mammal DER1. chilling tolerance related protein. D10860. Q06397. GO:0036503: ERAD pathway.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os05g0187800	LOC_Os05g09550.1, LOC_Os05g09550.2, LOC_Os05g09550.3				GO:0034976 - response to endoplasmic reticulum stress, GO:0006986 - response to unfolded protein, GO:0010498 - proteasomal protein catabolic process, GO:0005783 - endoplasmic reticulum, GO:0006457 - protein folding, GO:0006508 - proteolysis, GO:0009408 - response to heat, GO:0009644 - response to high light intensity, GO:0042542 - response to hydrogen peroxide, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane	TO:0000100 - shrunken endosperm, TO:0000104 - floury endosperm	
14185	_		_					chilling-inducible protein. Z54153.	 Tolerance and resistance - Stress tolerance						GO:0009966 - regulation of signal transduction		
14186	_	RASI, OsEnS-69	_	rice alpha-amylase/subtilisin inhibitor, alpha-amylase/subtilisin inhibitor, endosperm-specific gene 69			4	AY166458, AY166459. P29421. LOC_Os04g44470.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0526600	LOC_Os04g44470.1				GO:0015066 - alpha-amylase inhibitor activity, GO:0004867 - serine-type endopeptidase inhibitor activity		
14187	PEX5	OsPEX5, OsPex5pL, OsPex5pS, OsPex5L, OsPex5S, OsPex5p	PEROXIN 5	peroxin 5, PEROXISOMAL RECEPTOR PROTEIN 5	PEROXIN 5		8	peroxisomal targeting signal 1 receptor. PTS1 receptor. AY772415, AY772416.	 Biochemical character	Os08g0500100	LOC_Os08g39080.1, LOC_Os08g39080.2				GO:0006625 - protein targeting to peroxisome, GO:0005052 - peroxisome matrix targeting signal-1 binding, GO:0010351 - lithium ion transport, GO:0009733 - response to auxin stimulus, GO:0006891 - intra-Golgi vesicle-mediated transport, GO:0006869 - lipid transport, GO:0006635 - fatty acid beta-oxidation		
14188	PEX7	OsPex7, OsPex7p	PEROXIN 7	peroxin 7	PEROXIN 7				 Biochemical character								
14189	PEX14	OsPex14, OsPex14p, OsPEX14	PEROXIN 14	peroxin 14	PEROXIN 14		5	AY262026.	 Biochemical character	Os05g0101200	LOC_Os05g01090.1, LOC_Os05g01090.2, LOC_Os05g01090.3				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0005778 - peroxisomal membrane, GO:0003714 - transcription corepressor activity, GO:0016558 - protein import into peroxisome matrix		
14190	_	OsISI1	_	Impaired sucrose induction1, ISI1 homologue			6	AJ697744.		Os06g0129300	LOC_Os06g03850.1				GO:0006109 - regulation of carbohydrate metabolic process, GO:0009745 - sucrose mediated signaling		
14191	KANGOUROU	Kangourou	GYPSY TYPE RETROTRANSPOSON KANGOUROU	Ty3/gypsy LTR retrotransposon kangourou				DQ365821 (Oryza australiensis).	 Other						GO:0032196 - transposition		
14192	WALLABI	Wallabi	GYPSY TYPE RETROTRANSPOSON WALLABI	Ty3/gypsy LTR retrotransposon Wallabi				DQ365824 (Oryza australiensis).	 Other						GO:0032196 - transposition		
14193	DINGO	Dingo	GYPSY TYPE RETROTRANSPOSON DINGO	Ty3/gypsy LTR retrotransposon Dingo				DQ365822 (Oryza australiensis).	 Other						GO:0032196 - transposition		
14194	WOX9	OsWOX9, DWL1	WUSCHEL-LIKE HOMEOBOX 9	WUSCHEL-related homeobox 9, DWT-LIKE 1	WUSCHEL-LIKE HOMEOBOX 9		7	AM234752. A3BKM2. LOC_Os07g34880. Os07g0533100 (in Rap3 (build5)).	 Other	Os07g0533201 	LOC_Os07g34880.1				GO:0007275 - multicellular organismal development, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding		
14195	WOX9C	OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C	WUSCHEL-LIKE HOMEOBOX 9C	WUSCHEL-related homeobox 9C, DWT-LIKE 2	WUSCHEL-LIKE HOMEOBOX 9C	dwl2, dwl2-1, dwl2-2	5	AM234753. A3B6V0. a homologue of DWT1. GO:1990110: callus formation.	 Other,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Culm	Os05g0564500	LOC_Os05g48990.1				GO:0010229 - inflorescence development, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0007275 - multicellular organismal development	TO:0000207 - plant height, TO:0000145 - internode length, TO:0006036 - stem elongation, TO:0000428 - callus induction, TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0007089 - stem elongation stage 
14197	_	OsPMM	_	phosphomannomutase			4	DQ442992. Q7XPW5.	 Biochemical character	Os04g0682300	LOC_Os04g58580.1, LOC_Os04g58580.2				GO:0046686 - response to cadmium ion, GO:0004615 - phosphomannomutase activity, GO:0005829 - cytosol, GO:0006833 - water transport, GO:0019932 - second-messenger-mediated signaling, GO:0009266 - response to temperature stimulus, GO:0009651 - response to salt stress, GO:0010498 - proteasomal protein catabolic process, GO:0019307 - mannose biosynthetic process, GO:0006972 - hyperosmotic response, GO:0006096 - glycolysis, GO:0006094 - gluconeogenesis, GO:0007010 - cytoskeleton organization, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0007030 - Golgi organization, GO:0009298 - GDP-mannose biosynthetic process		
14198	_	OsSAHH, SAHH	_	AdoHcy hydrolase, Adenosylhomocysteinase, S-adenosyl-L-cystein hydrolase, S-adenosyl homocysteine hydrolase			11	AU064238. AY224544. D15532.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0455500	LOC_Os11g26850.2, LOC_Os11g26850.3				GO:0016441 - posttranscriptional gene silencing, GO:0005507 - copper ion binding, GO:0005773 - vacuole, GO:0005886 - plasma membrane, GO:0006346 - methylation-dependent chromatin silencing, GO:0006730 - one-carbon metabolic process, GO:0004013 - adenosylhomocysteinase activity	TO:0000432 - temperature response trait	
14199	_	Os CCC2, OsCCC2, OsLAT8	_	cation-Cl- cotransporter 2, cation-chloride cotransporter 2			1	BN000835. Q657W3. LOC_Os01g19850.	 Biochemical character	Os01g0304100	LOC_Os01g19850.1				GO:0016021 - integral to membrane, GO:0006813 - potassium ion transport, GO:0015293 - symporter activity		
14200	CCC1	Os CCC1, OsCCC1, OsLAT9	CATION-CHLORIDE COTRANSPORTER 1	cation-Cl- cotransporter 1, cation-chloride cotransporter 1, cation-chloride co-transporter	CATION-CHLORIDE COTRANSPORTER 1		8	GU250733. C96646, AU166285. Q6Z0E2. GO:1902476: chloride transmembrane transport. GO:0071805: potassium ion transmembrane transport. the candidate gene for qIL8.2.	 Vegetative organ - Leaf,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os08g0323700	LOC_Os08g23440.1				GO:0016021 - integral to membrane, GO:0009826 - unidimensional cell growth, GO:0005886 - plasma membrane, GO:0030104 - water homeostasis, GO:0009651 - response to salt stress, GO:0055064 - chloride ion homeostasis, GO:0055078 - sodium ion homeostasis, GO:0008511 - sodium:potassium:chloride symporter activity, GO:0008361 - regulation of cell size, GO:0055075 - potassium ion homeostasis	TO:0000207 - plant height, TO:0000432 - temperature response trait, TO:0000068 - lodging incidence, TO:0006001 - salt tolerance, TO:0000576 - stem length, TO:0000370 - leaf width, TO:0000051 - stem strength, TO:0000526 - sodium concentration, TO:0000513 - potassium concentration, TO:0000371 - yield trait, TO:0000339 - stem thickness, TO:0000145 - internode length, TO:0000227 - root length	PO:0020104 - leaf sheath , PO:0000025 - root tip 
14201	_	snoR54	_	box C/D snoRNA snoR54, box C/D small nucleolar RNA snoR54			2	EF647623.									
14202	_	snoR72	_	box C/D snoRNA snoR72, box C/D small nucleolar RNA snoR72			6	EF647624.									
14203	_	snoR69Y	_	box C/D snoRNA snoR69Y, box C/D small nucleolar RNA snoR69Y			7	EF647625.									
14204	_	snoR64Ya	_	box C/D snoRNA snoR64Ya, box C/D small nucleolar RNA snoR64Ya			8	EF647626.									
14205	_	snoR64Yb	_	box C/D snoRNA snoR64Yb, box C/D small nucleolar RNA snoR64Yb			8	EF647627.									
14206	_	snoR13Y	_	box C/D snoRNA snoR13Y, box C/D small nucleolar RNA snoR13Y			2	EF647628.									
14207	_	snoR180	_	box C/D snoRNA snoR180, box C/D small nucleolar RNA snoR180			9	EF647629.									
14208	_	snoR181	_	box C/D snoRNA snoR181, box C/D small nucleolar RNA snoR181			2	EF647630.									
14209	_	snoR182	_	box C/D snoRNA snoR182, box C/D small nucleolar RNA snoR182			2	EF647631.									
14210	_	snoR183	_	box C/D snoRNA snoR183, box C/D small nucleolar RNA snoR183			2	EF647632.									
14211	_	snoR184	_	box C/D snoRNA snoR184, box C/D small nucleolar RNA snoR184			2	EF647633.									
14212	_	snoR185	_	box C/D snoRNA snoR185, box C/D small nucleolar RNA snoR185			7	EF647634.									
14213	_	snoR186	_	box C/D snoRNA snoR186, box C/D small nucleolar RNA snoR186			7	EF647635.									
14214	_	snoR187	_	box C/D snoRNA snoR187, box C/D small nucleolar RNA snoR187			6	EF647636.									
14215	_	snoR188	_	box C/D snoRNA snoR188, box C/D small nucleolar RNA snoR188			6	EF647637.									
14216	_	snoR189	_	box C/D snoRNA snoR189, box C/D small nucleolar RNA snoR189			6	EF647638.									
14217	_	snoR190	_	box C/D snoRNA snoR190, box C/D small nucleolar RNA snoR190			6	EF647639.									
14218	_	snoR191	_	box C/D snoRNA snoR191, box C/D small nucleolar RNA snoR191			9	EF647640.									
14219	_	OsCLE101, CLE101	_	CLV3/ESR-related 101, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 101			1	AB332048.		Os01g0170900 	LOC_Os01g07620.1						
14220	_	OsCLE102, CLE102	_	CLV3/ESR-related 102, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 102			1	AB332049.		Os01g0339400	LOC_Os01g23705.1						
14221	_	OsCLE103, CLE103	_	CLV3/ESR-related 103, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 103			1	AB332050.		Os01g0509400	LOC_Os01g32560.1						
14222	_	OsCLE104, CLE104	_	CLV3/ESR-related 104, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 104				AB332051.									
14223	_	OsCLE201, CLE201	_	CLV3/ESR-related 201, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 201				AB332052.									
14224	_	OsCLE203, CLE203	_	CLV3/ESR-related 203, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 203			2	AB332054.									
14225	_	OsCLE204, CLE204	_	CLV3/ESR-related 204, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 204			2	AB332055.									
14226	_	OsCLE205, CLE205	_	CLV3/ESR-related 205, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 205			2	AB332056.		Os02g0809300	LOC_Os02g56490.1						
14227	_	OsCLE206, CLE206	_	CLV3/ESR-related 206, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 206			2	AB332057.		Os02g0826300	LOC_Os02g58000.1						
14228	_	OsCLE301, CLE301	_	CLV3/ESR-related 301, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 301			3	AB332058.		Os03g0111000							
14229	_	OsCLE302, CLE302	_	CLV3/ESR-related 302, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 302			3	AB332059.		Os03g0260432							
14230	_	OsCLE303, CLE303	_	CLV3/ESR-related 303, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 303			3	AB332060.		Os03g0366100	LOC_Os03g25060.1						
14231	_	OsCLE304, CLE304	_	CLV3/ESR-related 304, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 304			3	AB332061.									
14232	_	OsCLE305, CLE305	_	CLV3/ESR-related 305, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 305			3	AB332062.		Os03g0692100	LOC_Os03g48570.1						
14233	_	OsCLE306, CLE306	_	CLV3/ESR-related 306, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 306			3	AB332063.									
14234	_	OsCLE401, CLE401	_	CLV3/ESR-related 401, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 401			4	AB332064.									
14236	_	OsCLE403, CLE403	_	CLV3/ESR-related 403, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 403			4	AB332066.									
14237	_	OsCLE404, CLE404	_	CLV3/ESR-related 404, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 404			4	AB332067.		Os04g0658800	LOC_Os04g56370.1						
14238	_	OsCLE501, CLE501	_	CLV3/ESR-related 501, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 501			5	AB332068.									
14239	_	OsCLE502, CLE502	_	CLV3/ESR-related 502, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 502			5	AB332069.		Os05g0117300	LOC_Os05g02630.1						
14240	_	OsCLE503, CLE503	_	CLV3/ESR-related 503, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 503			5	AB332070.		Os05g0170600 	LOC_Os05g07830.1, LOC_Os05g07840.1						
14241	_	OsCLE504, CLE504	_	CLV3/ESR-related 504, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 504			5	AB332071.									
14242	_	OsCLE505, CLE505	_	CLV3/ESR-related 505, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 505			5	AB332072.									
14243	_	OsCLE506, CLE506	_	CLV3/ESR-related 506, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 506			5	AB332073.									
14244	_	OsCLE507, CLE507	_	CLV3/ESR-related 507, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 507			5	AB332074.		Os05g0505900 	LOC_Os05g43030.1						
14245	_	OsCLE508, CLE508	_	CLV3/ESR-related 508, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 508				AB332075.									
14246	_	OsCLE509, CLE509	_	CLV3/ESR-related 509, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 509			5	AB332076.									
14247	_	OsCLE601, CLE601	_	CLV3/ESR-related 601, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 601			6	AB332077.									
14248	_	OsCLE602, CLE602	_	CLV3/ESR-related 602, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 602			6	AB332078.									
14249	_	OsCLE603, CLE603	_	CLV3/ESR-related 603, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 603			6	AB332079.		Os06g0697300	LOC_Os06g48220.1						
14250	_	OsCLE701, CLE701	_	CLV3/ESR-related 701			7	AB332080. LOC_Os07g09625. Os07g0194350 (in Ncbi and UniProt).		Os07g0194400	LOC_Os07g09625.1						
14251	_	OsCLE801, CLE801	_	CLV3/ESR-related 801, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 801			8	AB332081.									
14254	_		_				11	chitinase.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0702100	LOC_Os11g47600.1				GO:0004568 - chitinase activity, GO:0005975 - carbohydrate metabolic process		
14255	_		_				11	chitinase.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0702200	LOC_Os11g47610.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity		
14256	_	RCB4	_	chitinase RCB4			10	class III chitinase. AF350426.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0416100	LOC_Os10g28050.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity		
14257	_		_				11	chitinase.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0701900	LOC_Os11g47590.1				GO:0005975 - carbohydrate metabolic process, GO:0004568 - chitinase activity		
14258	_	prx66	_	class III peroxidase 66			5	BN000595.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0134700	LOC_Os05g04410.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14259	_	POD2, OsPOD2, PRX13, OSPRX13	_	peroxidase, Peroxidase 71			1	.Peroxidase 71 in Liu et al. 2018.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0326300	LOC_Os01g22249.1				GO:0020037 - heme binding, GO:0046688 - response to copper ion, GO:0005576 - extracellular region, GO:0006979 - response to oxidative stress, GO:0042744 - hydrogen peroxide catabolic process, GO:0050832 - defense response to fungus, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding	TO:0000074 - blast disease, TO:0000021 - copper sensitivity	
14260	LE	OsRHC1, RHC1, OsLE, TT3.1, OsTT3.1, OsRING133, RING133, DGS1, OsDGS1	LARGE EMBRYO	RING-HC protein 1, large embryo, Thermo-tolerance 3.1, RING-type E3 ubiquitin ligase 133, decreased grain size1, DECREASED GRAIN SIZE 1		le, tt3.1, dgs1, dgs1-1, dgs1-2, dgs1-3, dgs1-4, Ossgd1	3	a RING zinc finger protein. C3HC4-type RING finger protein. a plasma membrane-localized E3 ligase. a protein with a 7-transmembrane domain and C3HC4 type RING domain. EF624461. ABF98464. PO:0030123: panicle inflorescence. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:0035420: MAPK cascade involved in innate immune response.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Seed - Morphological traits - Embryo	Os03g0706900 	LOC_Os03g49900.1				GO:0002679 - respiratory burst during defense response, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0009408 - response to heat, GO:0005886 - plasma membrane, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0050832 - defense response to fungus, GO:0045089 - positive regulation of innate immune response, GO:0005773 - vacuole, GO:0044238 - primary metabolic process, GO:0044260 - cellular macromolecule metabolic process, GO:0005768 - endosome, GO:0009742 - brassinosteroid mediated signaling, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0000165 - MAPKKK cascade, GO:0016048 - detection of temperature stimulus	TO:0000259 - heat tolerance, TO:0000040 - panicle length, TO:0000074 - blast disease, TO:0000396 - grain yield, TO:0002759 - grain number, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000113 - giant embryo, TO:0000397 - grain size	PO:0009049 - inflorescence , PO:0009010 - seed 
14261	CSP1	OsCSP1	COLD SHOCK DOMAIN PROTEIN 1	cold shock domain protein 1, CSD protein 1	COLD SHOCK DOMAIN PROTEIN 1		2	EU658926.	 Tolerance and resistance - Stress tolerance	Os02g0121100	LOC_Os02g02870.1				GO:0003677 - DNA binding, GO:0010224 - response to UV-B, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000601 - UV-B light sensitivity	
14262	_	OsCSP2, CPS2	_	cold shock domain protein 2, CSD protein 2, Glycine-rich protein 2, cold shock protein 2			8	EU658927. D16054.	 Tolerance and resistance - Stress tolerance	Os08g0129200	LOC_Os08g03520.1				GO:0032508 - DNA duplex unwinding, GO:0003690 - double-stranded DNA binding, GO:0010228 - vegetative to reproductive phase transition, GO:0051775 - response to redox state, GO:0003729 - mRNA binding, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0003697 - single-stranded DNA binding, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0048443 - stamen development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0048316 - seed development, GO:0005730 - nucleolus		
14263	GLUB3.P	GluB-3.P, GluB-3	GLUTELIN B3 PSEUDOGENE				2	EU264105 (promoter sequence). X54193.									
14264	MTR1	Mtr1, PDT, ADT, ADT1/MTR1, OsADT1, OsMTR1	5-METHYLTRYPTOPHAN RESISTANT 1	prephenate dehydratase, arogenate dehydratase, 5MT resistant 1, 5-methyltryptophan resistant 1		mtr1-D	7	AB300404.	 Biochemical character	Os07g0694600	LOC_Os07g49390.1				GO:0016597 - amino acid binding, GO:0009507 - chloroplast, GO:0047769 - arogenate dehydratase activity, GO:0004664 - prephenate dehydratase activity, GO:0009094 - L-phenylalanine biosynthetic process		
14266	_	PcIMT1	_	"inositol methyl transferase 1, Porteresia coarctata
inositol methyl transferase 1"				EU240449. Oryza coarctata (Wild rice).	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0008171 - O-methyltransferase activity, GO:0032259 - methylation		
14267	PDF1A	OsPDF1A	PEPTIDE DEFORMYLASE 1A	peptide deformylase 1A	PEPTIDE DEFORMYLASE 1A		1	EU213045. B6RGY0.	 Biochemical character	Os01g0555800	LOC_Os01g37510.1				GO:0006412 - translation, GO:0009570 - chloroplast stroma, GO:0042586 - peptide deformylase activity, GO:0005506 - iron ion binding		
14268	PDF1B	OsPDF1B	PEPTIDE DEFORMYLASE 1B	peptide deformylase 1B	PEPTIDE DEFORMYLASE 1B	pdf1b	1	EU213046. Q5VNN5.	 Biochemical character	Os01g0637600	LOC_Os01g45070.1, LOC_Os01g45070.2				GO:0005506 - iron ion binding, GO:0042586 - peptide deformylase activity, GO:0009570 - chloroplast stroma, GO:0006412 - translation, GO:0005739 - mitochondrion		
14269	PDF1B2	OsPDF1B2, OsPDF1B2.p	PEPTIDE DEFORMYLASE 1B2	peptide deformylase 1B2, peptide deformylase 1B2 pseudogene	PEPTIDE DEFORMYLASE 1B2		1	EU213047.	 Biochemical character	Os01g0636600	LOC_Os01g44980.1				GO:0042586 - peptide deformylase activity, GO:0006412 - translation, GO:0018206 - peptidyl-methionine modification, GO:0046872 - metal ion binding		
14270	GW6	OsGSR1, GSR1, OsGASR7, GASR7, OsGW6, OsGASR7/GW6	GRAIN WIDTH 6	GAST family gene in rice 1, GA-stimulated transcript family gene in rice 1, gibberellic acid- stimulated regulator 7		OsGASR7I, OsGASR7II, OsGASR7III, OsGASR7IV, OsGASR7BD, OsGASR7SYN	6	AY604180. GASR7 in Li et al. 2016, Tang et al. 2020. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os06g0266800	LOC_Os06g15620.1				GO:0010224 - response to UV-B, GO:0009739 - response to gibberellin stimulus, GO:0030307 - positive regulation of cell growth, GO:0016132 - brassinosteroid biosynthetic process, GO:0009740 - gibberellic acid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0010372 - positive regulation of gibberellin biosynthetic process	TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002675 - gibberellic acid content, TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0002676 - brassinosteroid content, TO:0000601 - UV-B light sensitivity, TO:0000734 - grain length	
14271	_	OsGASR1, GASR1	_	GAST (GA-stimulated transcript) homolog 1, GAST homolog 1, GA-stimulated transcript homolog 1, GA-stimulated transcript-related gene 1		osgasr1	3	LOC_Os03g55290. BAD67542. AB192574. a member of the GAST (gibberelin (GA)-Stimulated Transcript) family. GO:1900140: regulation of seedling development.	 Vegetative organ - Leaf,  Vegetative organ - Shoot apical meristem(SAM)	Os03g0760800	LOC_Os03g55290.1				GO:0009739 - response to gibberellin stimulus, GO:0009826 - unidimensional cell growth, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0008283 - cell proliferation, GO:0048046 - apoplast, GO:0005618 - cell wall, GO:0009411 - response to UV, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000135 - leaf length, TO:0000160 - UV light sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0020148 - shoot apical meristem , PO:0000055 - bud , PO:0020123 - root cap , PO:0020147 - root apical meristem , PO:0000005 - cultured plant cell , PO:0001083 - inflorescence development stage 
14272	_	OsGASR2, GASR2	_	GAST (GA-stimulated transcript) homolog 2, GAST homolog 2, GA-stimulated transcript homolog 2, GA-stimulated transcript-related gene 2			4	BAD67543. AB192575.	 Vegetative organ - Shoot apical meristem(SAM)	Os04g0465300 	LOC_Os04g39110.1, LOC_Os04g39110.2				GO:0048046 - apoplast, GO:0008283 - cell proliferation, GO:0009739 - response to gibberellin stimulus, GO:0005618 - cell wall, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000166 - gibberellic acid sensitivity	PO:0020147 - root apical meristem , PO:0020148 - shoot apical meristem , PO:0020123 - root cap , PO:0000005 - cultured plant cell , PO:0001083 - inflorescence development stage 
14273	_	DWF1, DIM/DWF1, DIM	_				4		 Biochemical character,  Reproductive organ - panicle	Os04g0570500	LOC_Os04g48200.1				GO:0009055 - electron carrier activity, GO:0010229 - inflorescence development, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
14274	CAS	OsCAS, OAS-TL	BETA-CYANOALANINE SYNTHASE	beta-cyanoalanine synthase, O-acetylserine (thiol) lyase	BETA-CYANOALANINE SYNTHASE		4	AY720933. a target gene of osa-miR1432. GO:0080147: root hair cell development. 	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0165700	LOC_Os04g08350.4, LOC_Os04g08350.3, LOC_Os04g08350.2, LOC_Os04g08350.1				GO:0019761 - glucosinolate biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009684 - indoleacetic acid biosynthetic process, GO:0009750 - response to fructose stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019500 - cyanide catabolic process, GO:0030170 - pyridoxal phosphate binding, GO:0032880 - regulation of protein localization, GO:0042744 - hydrogen peroxide catabolic process, GO:0046686 - response to cadmium ion, GO:0004124 - cysteine synthase activity, GO:0050017 - L-3-cyanoalanine synthase activity, GO:0051410 - detoxification of nitrogen compound, GO:0009415 - response to water, GO:0006096 - glycolysis, GO:0005507 - copper ion binding, GO:0006535 - cysteine biosynthetic process from serine, GO:0006833 - water transport, GO:0006972 - hyperosmotic response, GO:0007030 - Golgi organization, GO:0009266 - response to temperature stimulus, GO:0009507 - chloroplast, GO:0009970 - cellular response to sulfate starvation, GO:0042594 - response to starvation	TO:0000175 - bacterial blight disease resistance, TO:0000007 - sulfur sensitivity, TO:0000237 - water stress trait	
14275	DR10	OsDR10	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 10	defense-responsive gene 10, pathogen-induced defense-responsive protein 10	PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 10		8	FJ194952. CX109127. the candidate gene for qShB.8-2 (sheath blight resistance QTL 8-2). 	 Tolerance and resistance - Disease resistance	Os08g0155900	LOC_Os08g05960.1				GO:0050832 - defense response to fungus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000255 - sheath blight disease resistance	
14276	DHODH1	OsDHODH1, OsDHPD, DHPD	DIHYDROOROTATE DEHYDROGENASE 1	dihydroorotate dehydrogenase 1, dihydropyrimidine dehydrogenase	DIHYDROOROTATE DEHYDROGENASE 1		2	DQ102485.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0736400	LOC_Os02g50350.1, LOC_Os02g50350.2				GO:0009651 - response to salt stress, GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity, GO:0006222 - UMP biosynthetic process, GO:0043562 - cellular response to nitrogen levels, GO:0009570 - chloroplast stroma, GO:0006207 - 'de novo' pyrimidine base biosynthetic process, GO:0006212 - uracil catabolic process, GO:0004158 - dihydroorotate oxidase activity	TO:0006001 - salt tolerance	
14277	TID1	OsTID1, TubA2, SRS5, OS-TubA2, OsTubA2, OsSRS5	TWISTED DWARF 1	TWISTED DWARF1, Tubulin alpha-2, Tubulin alpha-2 chain, small and round seed 5	ALPHA TUBLIN	Tid1-1, Srs5	11	AB512760. Q53M52. X91807. D29735.	 Character as QTL - Yield and productivity,  Biochemical character,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os11g0247300	LOC_Os11g14220.1				GO:0051258 - protein polymerization, GO:0009635 - response to herbicide, GO:0003924 - GTPase activity, GO:0046688 - response to copper ion, GO:0005200 - structural constituent of cytoskeleton, GO:0051510 - regulation of unidimensional cell growth, GO:0005525 - GTP binding, GO:0007017 - microtubule-based process, GO:0005874 - microtubule, GO:0005737 - cytoplasm	TO:0000484 - seed shape, TO:0000397 - grain size, TO:0000058 - herbicide sensitivity, TO:0000734 - grain length, TO:0000021 - copper sensitivity, TO:0000391 - seed size, TO:0000146 - seed length	
14278	_	eIF4Gtsv1, tsv1, eIF4G	_	Rice tungro spherical virus (RTSV) resistance gene, RTSV resistance gene, eukaryotic translation initiation factor 4G			7	GQ203288, GQ203289, GQ203290. B9FXV5.	 Tolerance and resistance - Disease resistance	Os07g0555200	LOC_Os07g36940.1, LOC_Os07g36940.2				GO:0009615 - response to virus, GO:0000226 - microtubule cytoskeleton organization, GO:0000911 - cytokinesis by cell plate formation, GO:0003677 - DNA binding, GO:0003743 - translation initiation factor activity, GO:0006417 - regulation of translation, GO:0009630 - gravitropism, GO:0009737 - response to abscisic acid stimulus, GO:0016070 - RNA metabolic process		
14279	_	OmBBD	_	O. minuta bifunctional nuclease in basal defense response				DQ872164. Q09LL3. GO:0090305: nucleic acid phosphodiester bond hydrolysis.	 Biochemical character,  Tolerance and resistance - Disease resistance						GO:0004518 - nuclease activity, GO:0005634 - nucleus		
14280	_	OsBBD1	_				1	OmBBD homolog. Q5N8J3. GO:0090305: nucleic acid phosphodiester bond hydrolysis.	 Biochemical character	Os01g0702000	LOC_Os01g50622.1, LOC_Os01g50622.2, LOC_Os01g50622.3, LOC_Os01g50622.4				GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0004518 - nuclease activity		
14281	RPL27-1	rpl27-1, rpl27, mtRPL27b, S27, S27(t), S27(t)*	MITOCHONDRIAL RIBOSOMAL PROTEIN L27	"mitochondrial ribosomal protein L27, F1 pollen sterility
gene S27, HYBRID STERILITY 27"	MITOCHONDRIAL RIBOSOMAL PROTEIN L27		8	AB496674. AB576647 (Oryza nivara). A loss-of-function allele of F1 pollen sterility gene S27 in Oryza nivara, S27-nivs is composed of two tandem mitochondrial ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive. S27-glums (O. glumaepatula allele).	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os08g0404300	LOC_Os08g31228.1				GO:0009555 - pollen development, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0005739 - mitochondrion	TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower , PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf 
14283	_	ZN, OsZN	_	ZEBRA-NECROSIS		zn	6	a thylakoid-bound protein. EU430513. GO:0035444: nickel cation transmembrane transport.	 Coloration	Os06g0116400	LOC_Os06g02580.1				GO:0015087 - cobalt ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015099 - nickel ion transmembrane transporter activity, GO:0046872 - metal ion binding		
14284	_	OsZNL	_	zebra-necrosis like protein			3	EU430514. GO:0035444: nickel cation transmembrane transport.		Os03g0156700	LOC_Os03g06090.1				GO:0015087 - cobalt ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015099 - nickel ion transmembrane transporter activity, GO:0046872 - metal ion binding		
14285	_	OsDOG1L-1	_	OsDOG1-like-1			1	a rice homolog of Arabidopsis DOG1.	 Other	Os01g0306400	LOC_Os01g20030.1				GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent		
14286	_	OsDOG1L-2, DOG1L-2	_	OsDOG1-like-2, DOG1-like-2			1	a rice homolog of Arabidopsis DOG1.	 Other,  Reproductive organ - panicle	Os01g0159000	LOC_Os01g06560.1, LOC_Os01g06560.2				GO:0006351 - transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0043565 - sequence-specific DNA binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
14287	_	OsDOG1L-3	_	OsDOG1-like-3			5	a rice homolog of Arabidopsis DOG1.	 Other	Os05g0560200	LOC_Os05g48650.1				GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent		
14288	_	SSD1	_	sword shape dwarf1		ssd1	3	AB516771.	 Vegetative organ - Culm	Os03g0302900	LOC_Os03g19080.1, LOC_Os03g19080.2, LOC_Os03g19080.3						
14289	CIN6	OsCIN5, CIN5, OsCIN6	CELL-WALL INVERTASE 6	cell-wall invertase 5, cell-wall invertase 6	CELL-WALL INVERTASE 6		4	AY578162. AY575553. Q56UD1. GO:0071836: nectar secretion. GO:0080167: response to karrikin. OsCIN5 in Cho et al. 2005.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0664900	LOC_Os04g56930.1, LOC_Os04g56930.2				GO:0009611 - response to wounding, GO:0051670 - inulinase activity, GO:0004575 - sucrose alpha-glucosidase activity, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0005982 - starch metabolic process, GO:0048046 - apoplast, GO:0031219 - levanase activity	TO:0000074 - blast disease	
14290	CIN7	OsCIN6, OsCIN7, CIN6, CWIN6, OsCWIN6	CELL-WALL INVERTASE 7	cell-wall invertase 6, cell-wall invertase 7	CELL-WALL INVERTASE 7	cwin6	4	AY578163. AY575554. Q56UD0. GO:0071836: nectar secretion. GO:0080167: response to karrikin. OsCIN7 in Ji et al. 2005.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os04g0664800	LOC_Os04g56920.1				GO:0005987 - sucrose catabolic process, GO:0004575 - sucrose alpha-glucosidase activity, GO:0031219 - levanase activity, GO:0009611 - response to wounding, GO:0005982 - starch metabolic process, GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0051670 - inulinase activity	TO:0000421 - pollen fertility, TO:0000328 - sucrose content, TO:0006005 - fructose content, TO:0000300 - glucose content, TO:0000696 - starch content	PO:0009005 - root , PO:0009066 - anther 
14291	CIN8.P	OsCIN8, OsCIN8.P, CIN8	CELL-WALL INVERTASE 8 PSEUDOGENE	cell-wall invertase 8 pseudogene			9	AY578165.									
14292	_	OsLS	_	Lumazine Synthase			4	GQ202237.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0497400	LOC_Os04g42000.1				GO:0009349 - riboflavin synthase complex, GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity, GO:0006007 - glucose catabolic process, GO:0016740 - transferase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009570 - chloroplast stroma, GO:0009231 - riboflavin biosynthetic process		
14293	RAVL1	RAVL, OsRAVL1, OsNGA3, NGA3	RAV-LIKE 1	RAV-Like1, RAV-like 1 protein, NGATHA 3, NGATHA Transcription Factor 3	RAV-LIKE 1	ravl1, ravl1-1, ravl1-2	4	HM450152. Q7F9W2. RAVL in Chen et al. 2015. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Root,  Other,  Vegetative organ - Leaf	Os04g0581400	LOC_Os04g49230.1				GO:0009742 - brassinosteroid mediated signaling, GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0030187 - melatonin biosynthetic process, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0003677 - DNA binding, GO:0010422 - regulation of brassinosteroid biosynthetic process	TO:0000206 - leaf angle, TO:0000255 - sheath blight disease resistance, TO:0000227 - root length, TO:0000326 - leaf color	
14294	_	OsBBI1, OsRING242, RING242	_	BLAST AND BTH INDUCED 1, RING-type E3 ubiquitin ligase 242			6	HQ123581, HQ123582. a RING finger protein with E3 ligase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0125800	LOC_Os06g03580.1, LOC_Os06g03580.2, LOC_Os06g03580.3, LOC_Os06g03580.4				GO:0016874 - ligase activity, GO:0008270 - zinc ion binding		
14295	CYP734A2	OsCYP734A2	CYTOCHROME P450 HYDROXYLASE 734A2	Cytochrome P450 734A2	CYTOCHROME P450 HYDROXYLASE 734A2		2	AB488666. Q6Z6D6. a rice homolog of Arabidopsis BAS1.	 Vegetative organ - Shoot apical meristem(SAM),  Biochemical character	Os02g0204700	LOC_Os02g11020.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0040008 - regulation of growth, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016133 - brassinosteroid catabolic process, GO:0016131 - brassinosteroid metabolic process, GO:0008395 - steroid hydroxylase activity, GO:0016021 - integral to membrane, GO:0009416 - response to light stimulus, GO:0010268 - brassinosteroid homeostasis, GO:0009741 - response to brassinosteroid stimulus, GO:0009055 - electron carrier activity		
14296	CYP734A4	OsCYP734A4	CYTOCHROME P450 HYDROXYLASE 734A4		CYTOCHROME P450 HYDROXYLASE 734A4		6	AB488667. Q69XM6. a rice homolog of Arabidopsis BAS1.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM)	Os06g0600400	LOC_Os06g39880.1				GO:0040008 - regulation of growth, GO:0016133 - brassinosteroid catabolic process, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0008395 - steroid hydroxylase activity, GO:0009741 - response to brassinosteroid stimulus, GO:0009055 - electron carrier activity, GO:0009416 - response to light stimulus, GO:0016021 - integral to membrane, GO:0016131 - brassinosteroid metabolic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010268 - brassinosteroid homeostasis, GO:0020037 - heme binding	TO:0002689 - leaf sheath length, TO:0000492 - leaf shape	
14297	CYP734A5		CYTOCHROME P450 HYDROXYLASE 734A5		CYTOCHROME P450 HYDROXYLASE 734A5		7	AB488668. Q8LIF2. a rice homolog of Arabidopsis BAS2.	 Biochemical character	Os07g0647200	LOC_Os07g45290.1				GO:0016021 - integral to membrane, GO:0008395 - steroid hydroxylase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010268 - brassinosteroid homeostasis, GO:0009741 - response to brassinosteroid stimulus, GO:0016131 - brassinosteroid metabolic process, GO:0009416 - response to light stimulus, GO:0009055 - electron carrier activity		
14298	CYP734A6	OsCYP734A6	CYTOCHROME P450 HYDROXYLASE 734A6		CYTOCHROME P450 HYDROXYLASE 734A6		1	AB488669. B9X287. a rice homolog of Arabidopsis BAS1.	 Biochemical character,  Vegetative organ - Shoot apical meristem(SAM)	Os01g0388000	LOC_Os01g29150.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009055 - electron carrier activity, GO:0016021 - integral to membrane, GO:0040008 - regulation of growth, GO:0010268 - brassinosteroid homeostasis, GO:0005506 - iron ion binding, GO:0016133 - brassinosteroid catabolic process, GO:0020037 - heme binding, GO:0016131 - brassinosteroid metabolic process		
14299	_	trnL(AAC), trnL	_	tRNA-Leu			Pt	AY792515-AY792524 (O.sativa and other wild rice species).									
14300	_	OIP30	_	OsCPK25/26-interacting protein 30				a RuvB-Like DNA Helicase 2 (RuvBL2). JF793663.							GO:0043141 - ATP-dependent 5'-3' DNA helicase activity, GO:0032508 - DNA duplex unwinding, GO:0005524 - ATP binding		
14303	_	RKb2	_	receptor-kinase gene b2			11	OoRKb2  and OmRKb2 could be generated through tandem duplication or unequal crossover. They were truncated and appeared to encode only an incomplete kinase domain.									
14304	LAX2	OsLAX2, Gnp4/LAX2, Gnp4	LAX PANICLE 2	lax panicle2, Grain number per-panicle 4		lax2, lax2-1, lax2-2, lax2-3, lax2-4, gnp4	4	AB669025. KY673700. Regulate axillary meristem formation process. a RING-finger and wd40-associated ubiquitin-like (RAWUL) domain-containing protein.	 Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Reproductive organ - Inflorescence	Os04g0396500	LOC_Os04g32510.1				GO:0030307 - positive regulation of cell growth, GO:0009734 - auxin mediated signaling pathway, GO:0010229 - inflorescence development, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0000621 - inflorescence development trait, TO:0000382 - 1000-seed weight, TO:0000456 - spikelet number, TO:0000734 - grain length, TO:0002759 - grain number, TO:0000050 - inflorescence branching, TO:0000152 - panicle number	PO:0001083 - inflorescence development stage 
14305	_	STR2	_	ABC transporter STR2, Medicago truncatula stunted arbuscule 2		str2-1	7	JN608806.	 Biochemical character,  Vegetative organ - Root	Os07g0191600	LOC_Os07g09384.1				GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0006200 - ATP catabolic process, GO:0016887 - ATPase activity		
14306	_	FCL1	_	Fused Compound Leaf1			3	HQ695003.							GO:0005634 - nucleus, GO:0003677 - DNA binding		
14307	_	FCL2	_	Fused Compound Leaf2			3	HQ695004.							GO:0005634 - nucleus, GO:0003677 - DNA binding		
14308	_	trnK(TTT), trnK	_	tRNA-Lys			Pt	HE574131 (Oryza meridionalis), HE586098 (Oryza coarctata).									
14309	_	orf126	_				Mt	JF281154 (indica WA-CMS (wild abortive cytoplasmic male sterility) complete mitochondrial genome).  One of two candidate WA-CSM-associated ORFs that may cause the male sterility phenotype carried by the WA-CMS mitochondrial genome. Chimeric ORF of orf284, rpl2 and urf.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion		
14310	_	orf86d	_				Mt	JF281154 (indica WA-CMS (wild abortive cytoplasmic male sterility) complete mitochondrial genome).  One of two candidate WA-CSM-associated ORFs that may cause the male sterility phenotype carried by the WA-CMS mitochondrial genome. Chimeric ORF of orf61 and atp1.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion		
14311	XIAO	OsXIAO, OsCLV2e, CLV2e	_	LRR-RLK protein XIAO, CLAVATA 2e			4	JQ234882. a putative LRR receptor-like kinase.		Os04g0576900	LOC_Os04g48760.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
14312	LHCB2.1	LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN B2.1	light-harvesting chlorophyll a/b-binding protein b2.1	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN B2.1		3	D00642. Q10HD0. MH03t0450600. homologous to AT2G05070 (LHCB2.2).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0592500	LOC_Os03g39610.2, LOC_Os03g39610.1				GO:0010114 - response to red light, GO:0009266 - response to temperature stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0010378 - temperature compensation of the circadian clock, GO:0007623 - circadian rhythm, GO:0009637 - response to blue light, GO:0009765 - photosynthesis, light harvesting, GO:0009941 - chloroplast envelope, GO:0010218 - response to far red light, GO:0005886 - plasma membrane, GO:0009522 - photosystem I, GO:0009523 - photosystem II, GO:0046872 - metal ion binding, GO:0010287 - plastoglobule, GO:0018298 - protein-chromophore linkage, GO:0009651 - response to salt stress, GO:0010269 - response to selenium ion, GO:0046686 - response to cadmium ion, GO:0016168 - chlorophyll binding, GO:0016021 - integral to membrane	TO:0000432 - temperature response trait, TO:0006001 - salt tolerance, TO:0000032 - selenium sensitivity	
14313	PIL16	APG, OsPIL16, OsbHLH106	_	ANTAGONIST OF PGL1, PHYTOCHROME INTERACTING FACTOR-LIKE 16, basic helix-loop-helix protein 106			5	AB667900. GO:0070998: sensory perception of gravity.	 Vegetative organ - Root,  Seed - Morphological traits,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os05g0139100	LOC_Os05g04740.2, LOC_Os05g04740.1				GO:0032922 - circadian regulation of gene expression, GO:0032956 - regulation of actin cytoskeleton organization, GO:0009959 - negative gravitropism, GO:0009416 - response to light stimulus	TO:0002756 - shoot habit, TO:0000734 - grain length, TO:0000075 - light sensitivity	
14314	_	YSA	_	young seedling albino		ysa	3	JN167987. a pentatricopeptide repeat (PPR) gene family protein.	 Coloration	Os03g0597200 	LOC_Os03g40020.1				GO:0010027 - thylakoid membrane organization, GO:0004386 - helicase activity, GO:0016226 - iron-sulfur cluster assembly, GO:0048481 - ovule development, GO:0009793 - embryonic development ending in seed dormancy, GO:0010228 - vegetative to reproductive phase transition, GO:0009507 - chloroplast		
14315	_	OsYs15	_	yellow stripe-like gene 15			5										
14316	_	OsYs10	_	yellow stripe-like gene 10			4										
14317	_	SI1	_	sucrose induced 1			2	U16255, D15350.	 Other	Os02g0553600	LOC_Os02g34830.1, LOC_Os02g34840.1				GO:0003677 - DNA binding, GO:0003713 - transcription coactivator activity, GO:0006355 - regulation of transcription, DNA-dependent		
14318	_	SR3	_	sucrose repressed 3			2	U16257, D15888.		Os02g0823600							
14319	_	SI2	_	sucrose induced 2			3	U16747.		Os03g0796000	LOC_Os03g58170.1, LOC_Os03g58170.2						
14320	_	SR1	_	sucrose repressed 1				U16256.									
14321	_	SR4	_	sucrose repressed 4				U16748.									
14322	_	M1	_	B1-homologous mitochondrial plasmid-like DNA 1			Mt	D50618 (Oryza officinalis).									
14323	_	M2	_	B1-homologous mitochondrial plasmid-like DNA 2			Mt	D50619 (Oryza officinalis).									
14324	_	M3	_	B1-homologous mitochondrial plasmid-like DNA 3			Mt	D50620 (Oryza latifolia).									
14325	_	U3	_	U3 snRNA, U3 small nuclear RNA			4	X79685.									
14326	TUBA3	OsTubA3, TubA3, OS-TubA1, TubA1	TUBULIN ALPHA-3 CHAIN	Tubulin alpha-3 chain, Tubulin alpha-3, tubulin alpha-1 chain	TUBULIN ALPHA-3 CHAIN		3	X91806. D16089, D15886. Tubulin alpha-1 chain and Tubulin alpha-2 chain in Sasaki et al. 1994. OS-TubA1 in Qin et al. 1997. tubulin/FtsZ domain-containing protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0726100	LOC_Os03g51600.1, LOC_Os03g51600.2				GO:0007017 - microtubule-based process, GO:0005737 - cytoplasm, GO:0005525 - GTP binding, GO:0005198 - structural molecule activity, GO:0003924 - GTPase activity, GO:0005200 - structural constituent of cytoskeleton, GO:0046688 - response to copper ion, GO:0051258 - protein polymerization, GO:0005874 - microtubule	TO:0000021 - copper sensitivity	
14327	_	OsPAF1	_	C2 subunit of the 20S proteasome, 20S proteasome C2 subunit, 20S proteasome alpha6 subunit			2	D37886. P52428.	 Biochemical character	Os02g0133800	LOC_Os02g04100.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0019773 - proteasome core complex, alpha-subunit complex		
14328	SUMO1	smt3, SMT3, OsSUMO1	SMALL UBIQUITIN LIKE MODIFIER 1	small ubiquitin like modifier 1, small ubiquitin like modifier protein 1, SUMO protein 1	SMALL UBIQUITIN LIKE MODIFIER 1		1	X99608. P55857. GO:0044389: ubiquitin-like protein ligase binding. OsSUMO2 in Park et al. 2021,	 Tolerance and resistance - Stress tolerance	Os01g0918300	LOC_Os01g68950.1				GO:0031386 - protein tag, GO:0016925 - protein sumoylation, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0009005 - root , PO:0020103 - flag leaf , PO:0009051 - spikelet , PO:0025034 - leaf 
14329	_	HPT	_	homogentisic phytyltransferase				AX046728.	 Biochemical character								
14330	_		_	Prolamine 7			5	a major rice prolamine. Y00747. Q0DJ45. EF122440.	 Seed - Physiological traits - Storage substances	Os05g0329100|Os05g0329300|Os05g0329350	LOC_Os05g26377.1, LOC_Os05g26386.1				GO:0033095 - aleurone grain, GO:0005773 - vacuole, GO:0045735 - nutrient reservoir activity		
14331	EXPB1A	OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1	BETA-EXPANSIN 1A	Major pollen allergen Ory s 1, Expansin-B1, Beta-expansin-1, Expansin-B1A, Beta-expansin-1A	BETA-EXPANSIN 1A		3	U31771. AF261270. Q40638. a group-1 allergen of rice pollen.		Os03g0106500	LOC_Os03g01610.1				GO:0019953 - sexual reproduction, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0016020 - membrane		
14332	PRODH	OsProDH, OsPDH, PDH	PROLINE DEHYDROGENASE	Proline dehydrogenase	PROLINE DEHYDROGENASE		10	GO:2000214: regulation of proline metabolic process. GO:0072593:  reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0550900	LOC_Os10g40360.1				GO:0006562 - proline catabolic process, GO:0004657 - proline dehydrogenase activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0006560 - proline metabolic process, GO:0010033 - response to organic substance, GO:0005739 - mitochondrion, GO:0009413 - response to flooding, GO:0006537 - glutamate biosynthetic process	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	PO:0009005 - root , PO:0025034 - leaf 
14333	SAP8	Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1	STRESS ASSOCIATED PROTEIN GENE 8	rice (indica) stress associated protein gene8, Zinc finger A20 and AN1 domain-containing stress-associated protein 8, O. sativa subspecies indica stress-associated protein 8, stress-associated protein 8	STRESS ASSOCIATED PROTEIN 8		6	AY345599. A2YEZ6, A3BDI8. AU068611, AU166664. BF889485. P. vulgaris PVPR3 protein homolog. OsSAP1 in de Freitas et al. 2019. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0612800	LOC_Os06g41010.1, LOC_Os06g41010.4, LOC_Os06g41010.3				GO:0010446 - response to alkalinity, GO:0003677 - DNA binding, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0006950 - response to stress, GO:0050832 - defense response to fungus	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000432 - temperature response trait, TO:0000481 - alkali sensitivity, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0001170 - seed development stage 
14334	PIL11	OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4	PHYTOCHROME INTERACTING FACTOR-LIKE 11	basic helix-loop-helix protein 102, Phytochrome interacting factor 4	PHYTOCHROME INTERACTING FACTOR-LIKE 11		12	a homolog of OsbHLH107. GO:1902326: positive regulation of chlorophyll biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os12g0610200	LOC_Os12g41650.5, LOC_Os12g41650.4, LOC_Os12g41650.3, LOC_Os12g41650.2				GO:0003677 - DNA binding, GO:0009628 - response to abiotic stimulus, GO:0009658 - chloroplast organization, GO:0009414 - response to water deprivation, GO:0015995 - chlorophyll biosynthetic process	TO:0002616 - flowering time, TO:0000168 - abiotic stress trait, TO:0000397 - grain size, TO:0000276 - drought tolerance, TO:0002715 - chloroplast development trait, TO:0000396 - grain yield, TO:0000734 - grain length	
14335	PIL12	OsPIL12, OsbHLH103, bHLH103	_	PHYTOCHROME INTERACTING FACTOR-LIKE 12, basic helix-loop-helix protein 103			3		 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os03g0639300	LOC_Os03g43810.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0002616 - flowering time, TO:0000276 - drought tolerance	
14336	PIL14	OsPIL14, OsbHLH104, bHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta	_	PHYTOCHROME INTERACTING FACTOR-LIKE 14, Phytochrome Interacting factor 3-Like 14, basic helix-loop-helix protein 104, phytochrome-interacting factor 14		ospil14	7	JN400276 (PIF4). GO:2000280: regulation of root development.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os07g0143200	LOC_Os07g05010.3, LOC_Os07g05010.2, LOC_Os07g05010.1				GO:0048364 - root development, GO:0040008 - regulation of growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0030912 - response to deep water, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009416 - response to light stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0080134 - regulation of response to stress, GO:0009739 - response to gibberellin stimulus, GO:0009647 - skotomorphogenesis, GO:0009740 - gibberellic acid mediated signaling	TO:0000075 - light sensitivity, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000227 - root length, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance	
14337	PIL15	OsPIL15, OsbHLH105, PIF3, OsPIF3	PHYTOCHROME INTERACTING FACTOR-LIKE 15	phytochrome-interacting factor-like protein 15, Phytochrome interacting factor 3			1	a basic helix-loop-helix factor. TO:0000847: panicle inflorescence morphology trait.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date	Os01g0286100					GO:0009664 - plant-type cell wall organization, GO:0009629 - response to gravity, GO:0009639 - response to red or far red light, GO:0051302 - regulation of cell division, GO:0010184 - cytokinin transport, GO:0032922 - circadian regulation of gene expression, GO:0009416 - response to light stimulus, GO:0009958 - positive gravitropism, GO:0009734 - auxin mediated signaling pathway, GO:0005634 - nucleus, GO:0009832 - plant-type cell wall biogenesis, GO:0009640 - photomorphogenesis	TO:0002660 - cytokinin content, TO:0000557 - secondary branch number, TO:0000163 - auxin sensitivity, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000567 - tiller angle, TO:0000396 - grain yield	
14338	_	OsHFR, OsbHLH101	_	long hypocotyl in far-red													
14339	_	OsLF, LF, OsbHLH119	_	late flowering, basic helix-loop-helix protein 119			5	floral repressor. a repressor of Hd1. LOC_Os05g46370.	 Reproductive organ - Heading date	Os05g0541400	LOC_Os05g46370.1				GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time	
14340	RSUS4	SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4	SUCROSE SYNTHASE 4	Rice sucrose synthase-4, Sucrose synthase 4, Sucrose-UDP glucosyltransferase 4, Sucrose synthase-4, rice SuSy gene 4	SUCROSE SYNTHASE 4		3	Q10LP5. BGIOSGA010770 (indica). TO:0000845: collective phyllome structure morphology trait. GO:1901698: response to nitrogen compound.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Morphological traits	Os03g0340500	LOC_Os03g22120.1, LOC_Os03g22120.3, LOC_Os03g22120.2				GO:0051781 - positive regulation of cell division, GO:0009414 - response to water deprivation, GO:0016157 - sucrose synthase activity, GO:0005985 - sucrose metabolic process, GO:0009058 - biosynthetic process, GO:0051707 - response to other organism, GO:0009651 - response to salt stress	TO:0000011 - nitrogen sensitivity, TO:0000590 - grain weight, TO:0000696 - starch content, TO:0000396 - grain yield, TO:0006001 - salt tolerance, TO:0000592 - 1000-dehulled grain weight, TO:0000276 - drought tolerance, TO:0000449 - grain yield per plant	PO:0007632 - seed maturation stage 
14341	RSUS5	SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5	SUCROSE SYNTHASE 5	Rice sucrose synthase-5, Sucrose synthase 5, Sucrose-UDP glucosyltransferase 5, Sucrose synthase-5, rice SuSy gene 5	SUCROSE SYNTHASE 5		4	H6TFZ4. HQ895723. TO:0000845: collective phyllome structure morphology trait.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits	Os04g0309600	LOC_Os04g24430.1				GO:0005737 - cytoplasm, GO:0009058 - biosynthetic process, GO:0005985 - sucrose metabolic process, GO:0051707 - response to other organism, GO:0051781 - positive regulation of cell division, GO:0016020 - membrane, GO:0016157 - sucrose synthase activity	TO:0000696 - starch content, TO:0000449 - grain yield per plant, TO:0000592 - 1000-dehulled grain weight, TO:0000396 - grain yield, TO:0000590 - grain weight	
14342	RSUS6	SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6	SUCROSE SYNTHASE 6	Rice sucrose synthase-6, Sucrose synthase 6, Sucrose-UDP glucosyltransferase 6, Sucrose synthase-6, rice SuSy gene 6	SUCROSE SYNTHASE 6		2	Q6K973. BGIOSGA009346 (indica). TO:0000845: collective phyllome structure morphology trait.	 Biochemical character,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0831500	LOC_Os02g58480.1				GO:0009414 - response to water deprivation, GO:0016157 - sucrose synthase activity, GO:0009058 - biosynthetic process, GO:0005985 - sucrose metabolic process, GO:0051707 - response to other organism, GO:0051781 - positive regulation of cell division	TO:0000592 - 1000-dehulled grain weight, TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0000449 - grain yield per plant, TO:0000276 - drought tolerance, TO:0000696 - starch content	
14343	RSUS7	SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7	SUCROSE SYNTHASE 7	Rice sucrose synthase-7, Sucrose synthase 7, Sucrose-UDP glucosyltransferase 7, Sucrose synthase-7, rice SuSy gene 7	SUCROSE SYNTHASE 7		4	Q7XNX6. HQ895725. BGIOSGA015483 (indica). 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0249500	LOC_Os04g17650.1				GO:0009414 - response to water deprivation, GO:0016157 - sucrose synthase activity, GO:0016020 - membrane, GO:0009725 - response to hormone stimulus, GO:0009058 - biosynthetic process, GO:0005985 - sucrose metabolic process, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0000328 - sucrose content, TO:0000481 - alkali sensitivity	
14344	_	LDC, PAP15, OsPAP15	_	lysine decarboxylase			3	LOC_Os03g63074. a phosphatase implicated in Pi recycling.	 Biochemical character	Os03g0848100	LOC_Os03g63074.1, LOC_Os03g63074.2, LOC_Os03g63074.3				GO:0008152 - metabolic process, GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding		
14345	_	OsEXO1, OsExo1, EXO1	_	Exonuclease-1, exonuclease 1			1	AB179769. Q60GC1. GO:0090305: nucleic acid phosphodiester bond hydrolysis. LOC_Os01g56940. flap endonuclease. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os01g0777300	LOC_Os01g56940.1				GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0004527 - exonuclease activity, GO:0046872 - metal ion binding, GO:0007126 - meiosis, GO:0004519 - endonuclease activity, GO:0003677 - DNA binding		
14346	_	OsDGL1	_	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit, dolichyl-diphosphooligosaccharide-protein glycosyltransferase 1, Glycosyltransferase 48 kDa subunit precursor		Osdgl1	7	Q6ZLK0.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0209000	LOC_Os07g10830.1				GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity, GO:0016021 - integral to membrane, GO:0018279 - protein amino acid N-linked glycosylation via asparagine, GO:0005789 - endoplasmic reticulum membrane	TO:0002649 - pesticide sensitivity	
14347	ASR4	OsASR2, OsASR4, Asr4, ASR2, OsASR6, ASR6	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN	"Abiotic Stress Responsive 2, \"ABA-, stress and ripening-induced protein 4\""	ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN		4	OsASR4 in Philippe et al. 2010 and Perez-Diaz et al. 2013. OsASR6 in Zhang et al. 2022. GO:1901002: positive regulation of response to salt stress. GO:1902884: positive regulation of response to oxidative stress.	 Tolerance and resistance - Stress tolerance	Os04g0423400	LOC_Os04g34600.1				GO:0005634 - nucleus, GO:0042542 - response to hydrogen peroxide, GO:0006950 - response to stress, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0005737 - cytoplasm	TO:0000615 - abscisic acid sensitivity, TO:0000608 - sodium content, TO:0000609 - potassium content, TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000525 - sodium to potassium content ratio, TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content	
14348	CPN60ALPHA1	OsCPn60alpha1, OsCPn60a1, CPn60a1	CHAPERONIN 60 ALPHA SUBUNIT 1	chaperonin 60 alpha subunit 1, 60 kDa chaperonin alpha subunit	CHAPERONIN 60 ALPHA SUBUNIT 1		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0277500	LOC_Os12g17910.1				GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0006457 - protein folding, GO:0010224 - response to UV-B, GO:0005524 - ATP binding	TO:0000188 - drought sensitivity, TO:0000601 - UV-B light sensitivity	
14349	_	OsCPn60alpha2, OsCPn60a2	_	chaperonin 60 alpha subunit 2			3	AY224481.	 Biochemical character	Os03g0859600/Os03g0859700	LOC_Os03g64210.3, LOC_Os03g64210.2, LOC_Os03g64210.1				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0044267 - cellular protein metabolic process		
14350	CPN60BETA1	OsCPn60beta1, OsCPn60b1, CPn60b1	CHAPERONIN 60 BETA SUBUNIT 1	chaperonin 60 beta subunit 1	CHAPERONIN 60 BETA SUBUNIT 1	OsCpn60beta1-1	6	T-complex protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf	Os06g0114000	LOC_Os06g02380.1, LOC_Os06g02380.2				GO:0005524 - ATP binding, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0015979 - photosynthesis, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0005737 - cytoplasm, GO:0042026 - protein refolding, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	
14351	_	OsCPn60beta2, OsCPn60b2	_	chaperonin 60 beta subunit 2, chaperonin 62.5K beta-chain			2	D16066.	 Biochemical character	Os02g0102900	LOC_Os02g01280.1				GO:0005524 - ATP binding, GO:0042026 - protein refolding, GO:0005737 - cytoplasm		
14352	_	OsCPn60beta3, OsCPn60b3	_	chaperonin 60 beta subunit 3					 Biochemical character								
14353	BOR2	OsBOR2	EFFLUX BORON TRANSPORTER 2	Boron transporter 2	EFFLUX BORON TRANSPORTER 2		1		 Biochemical character	Os01g0175700	LOC_Os01g08020.1				GO:0005452 - inorganic anion exchanger activity, GO:0016021 - integral to membrane		
14354	BOR4	OsBOR4	EFFLUX BORON TRANSPORTER 4	Boron transporter 4	EFFLUX BORON TRANSPORTER 4	osbor4	5	DQ421409. Pollen-Specific Boron Efflux Transporter. TO:0006043: boron concentration.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os05g0176800	LOC_Os05g08430.1				GO:0005452 - inorganic anion exchanger activity, GO:0009860 - pollen tube growth, GO:0046713 - boron transport, GO:0009846 - pollen germination, GO:0009566 - fertilization, GO:0016021 - integral to membrane	TO:0000421 - pollen fertility	
14355	IRX10	OsIRX10, OsIRX10L, IRX10L	IRREGULAR XYLEM 10	rice ortholog of Arabidopsis IRX10, IRREGULAR XYLEM10		Osirx10	1	Q8S1X7. OsIRX10L in Sun et al. 2020, Zhu et al. 2021.	 Biochemical character	Os01g0926700	LOC_Os01g70200.1				GO:0000139 - Golgi membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0045492 - xylan biosynthetic process, GO:0016021 - integral to membrane		
14356	HTAS	OsHTAS, OsRING39, RING39	HEAT TOLERANCE AT SEEDLING STAGE	heat tolerance at seedling stage, RING-type E3 ubiquitin ligase 39		OsHTASa, OsHTASb, oshtas	9	primery candidates: Os09g0320400 (transporter) and Os09g0323100 (zinc finger) in Wei et al. 2013. LOC_Os09g15430. KU133655. RING Finger Ubiquitin E3 Ligase. GO:0090333: regulation of stomatal closure. TO:0020095: stomatal process related trait.	 Tolerance and resistance - Stress tolerance	Os09g0323100 	LOC_Os09g15430.1, LOC_Os09g15430.2, LOC_Os09g15430.3, LOC_Os09g15430.4				GO:0009651 - response to salt stress, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0006970 - response to osmotic stress, GO:0010729 - positive regulation of hydrogen peroxide biosynthetic process, GO:0010118 - stomatal movement	TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance	PO:0025034 - leaf 
14357	10GBTF3	Osj10gBTF3, 10gBTF3, Os10gBTF3, BTF3a, OsBTF3a	_	BTF3a RNA pol B, BTF3a RNA polymerase B, beta-subunit of nascent polypeptide-associated complex	btf3-1, btf3-2, btf3-3		10	a basal transcription factor 3-like gene. BTF3a in Cooper et al. 2003. AY224531. GO:0090351:seedling development.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os10g0483000	LOC_Os10g34180.2, LOC_Os10g34180.1				GO:0045036 - protein targeting to chloroplast, GO:0009845 - seed germination, GO:0009570 - chloroplast stroma, GO:0009555 - pollen development, GO:0045037 - protein import into chloroplast stroma, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization	TO:0001015 - photosynthetic rate, TO:0002715 - chloroplast development trait, TO:0000455 - seed set percent, TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility, TO:0000207 - plant height	PO:0001007 - pollen development stage 
14358	_	Osj3g1BTF3, BTF3a, Os03g1BTF3	_	BTF3a RNA pol B, BTF3a RNA polymerase B, Transcription factor BTF3a			3	a basal transcription factor 3-like gene. AY224525. D22894. LOC Os03g01910. GO:0090351:seedling development.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0109600	LOC_Os03g01910.1, LOC_Os03g01910.2				GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0009845 - seed germination	TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance	
14359	_	Osj3g2BTF3, BTF3b, Os03g2BTF3	_	Transcription factor BTF3b			3	a basal transcription factor 3-like gene. Transcription factor BTF3b in Sasaki et al. 1994. D15593. LOC Os03g63400. GO:0090351: seedling development.		Os03g0851000	LOC_Os03g63400.1, LOC_Os03g63400.2				GO:0009845 - seed germination		
14360	EIF3E	eIF-3e, OseIF3e	EUKARYOTIC INITIATION FACTOR 3E	Eukaryotic translation initiation factor 3 subunit e	EUKARYOTIC INITIATION FACTOR 3E		7	TO:0000832: flag leaf anatomy and morphology trait.	 Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Biochemical character	Os07g0222300	LOC_Os07g12110.1				GO:0006446 - regulation of translational initiation, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0010555 - response to mannitol stimulus, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0010152 - pollen maturation	TO:0000456 - spikelet number, TO:0006032 - panicle size, TO:0000145 - internode length, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0002757 - flag leaf length, TO:0000269 - 100-seed weight, TO:0000227 - root length, TO:0000399 - grain thickness, TO:0000262 - panicle shape, TO:0000207 - plant height	
14361	EIF3H	eIF-3h, OseIF3h	EUKARYOTIC INITIATION FACTOR 3H	"\"eukaryotic translation initiation factor 3, subunit h\", Eukaryotic translation initiation factor 3 subunit h"	EUKARYOTIC INITIATION FACTOR 3H	oseif3h, oseif3h-1, oseif3h-2, oseif3h-3	4	NCBI Short Read Archive (SRA) under accession number PRJNA725322.	 Vegetative organ - Culm,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os04g0376500	LOC_Os04g30780.1, LOC_Os04g30780.2				GO:0033290 - eukaryotic 48S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0009555 - pollen development, GO:0015979 - photosynthesis, GO:0044237 - cellular metabolic process, GO:0006091 - generation of precursor metabolites and energy, GO:0005783 - endoplasmic reticulum, GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0009408 - response to heat, GO:0016282 - eukaryotic 43S preinitiation complex	TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000421 - pollen fertility, TO:0000455 - seed set percent, TO:0000357 - growth and development trait	PO:0009038 - palea , PO:0025034 - leaf , PO:0009047 - stem , PO:0001007 - pollen development stage , PO:0009037 - lemma , PO:0009030 - carpel 
14362	PPR676	OsPPR676, OsATP4, ATP4	PENTATRICOPEPTIDE REPEAT PROTEIN 676	pentatricopeptide repeat protein 676	PENTATRICOPEPTIDE REPEAT PROTEIN 676	osppr676, osppr676-1, osppr676-2, osppr676-3, osatp4	3	an Rf (fertility restorer)-like protein. OsPPR676 is the orthologue of maize ATP4 and Arabidopsis SVR7. the ortholog of maize ATP4. GO:1900871: chloroplast mRNA modification. TO:0006060: leaf chlorosis.	 Vegetative organ - Culm,  Seed - Morphological traits,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0215900	LOC_Os03g11670.1				GO:0019252 - starch biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0048653 - anther development, GO:0040007 - growth, GO:0016051 - carbohydrate biosynthetic process, GO:0009509 - chromoplast, GO:0016556 - mRNA modification, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0009555 - pollen development, GO:0009657 - plastid organization, GO:0016554 - cytidine to uridine editing, GO:0009409 - response to cold, GO:0009516 - leucoplast, GO:0005829 - cytosol, GO:0005737 - cytoplasm	TO:0000357 - growth and development trait, TO:0000326 - leaf color, TO:0000207 - plant height, TO:0000590 - grain weight, TO:0000371 - yield trait, TO:0000370 - leaf width, TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability, TO:0002714 - plastid development trait, TO:0000303 - cold tolerance, TO:0000053 - pollen sterility, TO:0000135 - leaf length, TO:0000040 - panicle length	PO:0025313 - tapetum , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
14363	PPR920	OsPPR920, OsPPR939, PPR939	PENTATRICOPEPTIDE REPEAT PROTEIN 920	pentatricopeptide repeat protein 920	PENTATRICOPEPTIDE REPEAT PROTEIN 920	osppr939, osppr939-1, -osppr9392, osppr939-3, osppr939-4, osppr939-5	5	an Rf (fertility restorer)-like protein. OsPPR939 in Zheng et al. 2021. GO:0090615: mitochondrial mRNA processing.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Culm	Os05g0275100	LOC_Os05g19390.1				GO:0000963 - mitochondrial RNA processing, GO:0009555 - pollen development, GO:0008380 - RNA splicing, GO:0005739 - mitochondrion	TO:0000053 - pollen sterility, TO:0000357 - growth and development trait, TO:0000421 - pollen fertility, TO:0000207 - plant height	PO:0001007 - pollen development stage 
14364	HSP82B	OsHSP82, hsp82B, HSP82	HEAT SHOCK PROTEIN 82B	Heat shock protein 82, Heat shock protein 81-2	HEAT SHOCK PROTEIN 82B	hsp82-1	9	Q69QQ6. Z15018. Heat shock protein 81-2 in Song et al. 2013.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os09g0482100	LOC_Os09g30412.1				GO:0006457 - protein folding, GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0009658 - chloroplast organization, GO:0045036 - protein targeting to chloroplast, GO:0006950 - response to stress, GO:0051082 - unfolded protein binding, GO:0046688 - response to copper ion, GO:0005737 - cytoplasm	TO:0000021 - copper sensitivity, TO:0000053 - pollen sterility, TO:0000455 - seed set percent, TO:0001015 - photosynthetic rate, TO:0000207 - plant height, TO:0000218 - pollen abortion type, TO:0002715 - chloroplast development trait	
14365	_	OsVIP1-1	_	VirE-interacting protein 1-1					 Tolerance and resistance - Disease resistance								
14366	_	OsVIP1-2	_	VirE-interacting protein 1-2					 Tolerance and resistance - Disease resistance								
14367	_	OsSSIIaChr7	_	soluble starch synthase IIa on Chromosome 7			7	LOC_Os07g13880.			LOC_Os07g13880						
14368	ALDH22A1	OsALDH22, ALDH22, OsALDH22A1	ALDEHYDE DEHYDROGENASE 22A1	aldehyde dehydrogenase 22, rice homolog of Arabidopsis ALDH22	ALDEHYDE DEHYDROGENASE 22A1		7	LOC_Os07g48920.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0688800	LOC_Os07g48920.1				GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor		
14369	_	OsSRH3	_	short root hair 3		ossrh3	1	OsSRH3 locus was mapped to a 37.7 kb region between the markers S38978 and S39016 on chromosome 1.	 Vegetative organ - Root								
14370	_	OsGSK3	_	glycogen synthase kinase3, glycogen synthase kinase 3			5	DQ060684.	 Tolerance and resistance - Stress tolerance,  Biochemical character						GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14371	NTRA	OsNTRA, NtrA	NADPH-DEPENDENT THIOREDOXIN REDUCTASE A	NADPH-dependent thioredoxin reductase A, NADP-thioredoxin reductase A	NADPH-DEPENDENT THIOREDOXIN REDUCTASE A		6	Q69PS6. cytoplasmic/mitochondrial type NTR.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0327300	LOC_Os06g22140.1				GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0050660 - FAD binding, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0019430 - removal of superoxide radicals		
14372	NTRB	OsNTRB, NtrB	NADPH-DEPENDENT THIOREDOXIN REDUCTASE B	NADPH-dependent thioredoxin reductase B, NADP-thioredoxin reductase B, NADPH-dependent Trx reductase B	NADPH-DEPENDENT THIOREDOXIN REDUCTASE A		2	Q6ZFU6. cytoplasmic/mitochondrial type NTR.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0713400	LOC_Os02g48290.1				GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0050660 - FAD binding, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0019430 - removal of superoxide radicals		
14374	SLB2																
14375	MRS2-3	OsMRS2-3	MRS2/MGT FAMILY MEMBER 3	MRS2/MGT family member 3	MRS2/MGT FAMILY MEMBER 3		1	Q8L4S2.	 Biochemical character	Os01g0908500	LOC_Os01g68040.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity		
14376	MRS2-5	OsMRS2-5	MRS2/MGT FAMILY MEMBER 5	MRS2/MGT family member 5	MRS2/MGT FAMILY MEMBER 5		3	Q10S25.	 Biochemical character	Os03g0137700	LOC_Os03g04480.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity		
14377	MRS2-6	OsMRS2-6, OsMGT3, MGT3	MRS2/MGT FAMILY MEMBER 6	MRS2/MGT family member 6, Mg2+ transporter 3	MRS2/MGT FAMILY MEMBER 6		3	Q9AUK4. TO:0006044: magnesium content.	 Biochemical character	Os03g0684400	LOC_Os03g48000.1, LOC_Os03g48000.2, LOC_Os03g48000.3				GO:0007623 - circadian rhythm, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity	TO:0000316 - photosynthetic ability, TO:0001015 - photosynthetic rate	PO:0005645 - leaf mesophyll 
14378	MRS2-7	OsMRS2-7	MRS2/MGT FAMILY MEMBER 7	MRS2/MGT family member 7	MRS2/MGT FAMILY MEMBER 7		3	Q10D38.	 Biochemical character	Os03g0742400	LOC_Os03g53110.1				GO:0016021 - integral to membrane, GO:0015095 - magnesium ion transmembrane transporter activity		
14379	MRS2-8	OsMRS2-8	MRS2/MGT FAMILY MEMBER 8	MRS2/MGT family member 8	MRS2/MGT FAMILY MEMBER 8		4	Q7XQQ1.	 Biochemical character	Os04g0430900	LOC_Os04g35160.1				GO:0015095 - magnesium ion transmembrane transporter activity, GO:0009620 - response to fungus, GO:0016021 - integral to membrane		
14380	MRS2-9	OsMRS2-9	MRS2/MGT FAMILY MEMBER 9	MRS2/MGT family member 9	MRS2/MGT FAMILY MEMBER 9		4	Q0JBZ6.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0501100	LOC_Os04g42280.1				GO:0015095 - magnesium ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
14381	RDR5	OsRDR5	RNA-DEPENDENT RNA POLYMERASE 5	RNA-dependent RNA polymerase 5	RNA-DEPENDENT RNA POLYMERASE 5				 Biochemical character								
14382	_	OsPRP, OsPRP1, PRP1, OsRePRP1.1, RePRP1.1	_	proline rich protein, repetitive proline rich protein, REPETITIVE PROLINE-RICH PROTEIN 1.1			5	AF337054. GO:2001085: arabinogalactan binding.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os05g0226900	LOC_Os05g13900.1				GO:0030247 - polysaccharide binding, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009415 - response to water, GO:0009738 - abscisic acid mediated signaling, GO:0048364 - root development, GO:0051511 - negative regulation of unidimensional cell growth, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000306 - root thickness, TO:0002649 - pesticide sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000286 - submergence sensitivity, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage , PO:0009049 - inflorescence 
14383	_	RPG43	_				5	a gene related to rice photoperiod sensitive genic male sterility. AF126027.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000009 - genic male sterility-photoperiod sensitive	
14384	_	Osr1A	_	disease resistance gene homologue 1A			12	AF059754.							GO:0043531 - ADP binding		
14385	_	Osr1B	_	disease resistance gene homologue 1B			12	AF059754.							GO:0043531 - ADP binding		
14386	_	Osr2	_	disease resistance gene homologue 2			12	AF067192.							GO:0043531 - ADP binding		
14387	_	Osr3	_	disease resistance gene homologue 3			12	AF067193.							GO:0043531 - ADP binding		
14388	_	OsZFP1, SRZ3	_	zinc finger protein 1, stress repressive zinc finger protein 3			6	AF171223.	 Tolerance and resistance - Stress tolerance	Os06g0141200	LOC_Os06g04920.1, LOC_Os06g04920.2				GO:0008270 - zinc ion binding		
14389	_	RGA1	_	Resistance gene analogue 1			11	AF074886.							GO:0043531 - ADP binding		
14390	_	RGA2	_	Resistance gene analogue 2			6	AF074887.									
14391	_	RGA7	_	Resistance gene analogue 7			4	AF074888.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
14392	_	RGA8	_	Resistance gene analogue 8			11	AF074889.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
14393	_	RGA12	_	Resistance gene analogue 12			5	AF074890.									
14394	_	RGA15	_	Resistance gene analogue 15			11	AF074891.									
14395	_	RGA16	_	Resistance gene analogue 16			11	AF074892.									
14396	_	RGA29	_	Resistance gene analogue 29			2	AF074893.									
14397	_	RGA33	_	Resistance gene analogue 33			3	AF074894.							GO:0043531 - ADP binding		
14398	_	RGA38	_	Resistance gene analogue 38			11	AF074895.									
14399	_	RGA40	_	Resistance gene analogue 40			4	AF074896.									
14400	_	RGA42	_	Resistance gene analogue 42			11	AF074897.									
14401	_	RGA47	_	Resistance gene analogue 47			11	AF074898.									
14402	_	RGA59	_	Resistance gene analogue 59			11	AF074899.									
14403	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA			2	M16845. X54194.									
14404	5.8S rRNA	5.8S rRNA	5.8S RIBOSOMAL RNA	5.8S RIBOSOMAL RNA			2	M16845. M35384.									
14405	_	Osh359-1	_					R disease resistance gene. Y09807.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
14406	_	Osh359-2	_				11	R disease resistance gene. Y09808. AF392808, AF392820, AF392821, AF392823, AF392853, AF392861.	 Tolerance and resistance - Disease resistance	Os11g0676050	LOC_Os11g45060.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14407	_	Osh359-3, Osh359-5	_				11	R disease resistance gene. Y09809, Y09810.		Os11g0623800	LOC_Os11g40780.1				GO:0043531 - ADP binding		
14408	_	Os8558-3, Os8558-8	_					R disease resistance gene. Y09812.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
14409	_	Os8558-12	_				3	R disease resistance gene. Y09811.							GO:0043531 - ADP binding		
14410	GLN1	OsGLN1	ENDO-1,3-BETA-GLUCANASE 1	endo-1, 3-beta-glucanase 1	ENDO-1,3-BETA-GLUCANASE 1		1	AF337174.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0946700	LOC_Os01g71830.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
14411	_	Fd, OsFd4, Fd4	_	ferredoxin, Ferredoxin B1, ferredoxin 4			5	D30794, D83660. D15551. LOC_Os05g37140. OsFd4 in Li et al. 2015. 	 Biochemical character	Os05g0443500	LOC_Os05g37140.1, LOC_Os05g37140.2				GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0022900 - electron transport chain, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding		
14412	_	OsDPK1, DPK1, MKKK32, OsMKKK32, MAPKKK32	_	dual-specificity protein kinase 1			8	AY156510.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0224100	LOC_Os08g12750.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14413	_	OsDPK2, stk	_	dual-specificity protein kinase 2, kinase-related transforming protein			2	AY156512. D15597. stk in Sasaki et al. 1994.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0174200	LOC_Os02g07790.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
14414	_	OsDPK3	_	dual-specificity protein kinase 3			6	AY206984.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0663400	LOC_Os06g45300.1, LOC_Os06g45300.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
14415	_	OsDPK4	_	dual-specificity protein kinase 4			4	AY156511.		Os04g0608900	LOC_Os04g51950.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
14416	_		_	ribosomal RNA			2	M37173.									
14417	_	OsSIN	_	SHORT INTERNODES			3	AF545810.	 Vegetative organ - Culm								
14418	PSK2	OsPSK2	PHYTOSULFOKINE 2	phytosulfokine 2	PHYTOSULFOKINE 2		11	AJ276692, C73667, D41594. sulfated peptide growth factor precursor. A2ZBG5, Q0IUL4.		Os11g0149400	LOC_Os11g05190.1				GO:0008283 - cell proliferation, GO:0007275 - multicellular organismal development, GO:0005576 - extracellular region, GO:0030154 - cell differentiation		
14419	PSK3	OsPSK3, GREP2, OMT9, OsPSK5, PSK5	PHYTOSULFOKINE 3	phytosulfokine 3, Oryza miR164-targeted gene 9	PHYTOSULFOKINE 3		12	AF068333, D48790. sulfated peptide growth factor precursor. O81277. OsPSK5 in Zhou et al. 2019, Zhou et al. 2022. osa-miR164c target gene.	 Seed - Physiological traits	Os12g0147800	LOC_Os12g05260.1				GO:0007275 - multicellular organismal development, GO:0005576 - extracellular region, GO:0030154 - cell differentiation, GO:0008283 - cell proliferation	TO:0000345 - seed viability	
14420	PSK4	OsPSK4, Psk4	PHYTOSULFOKINE 4	phytosulfokine 4	PHYTOSULFOKINE 4		7	AJ276693, AU68854, AU068855. sulfated peptide growth factor precursor. Q9AR88. D15509.		Os07g0124100	LOC_Os07g03200.1				GO:0008283 - cell proliferation, GO:0005576 - extracellular region, GO:0030154 - cell differentiation, GO:0007275 - multicellular organismal development		
14421	PSK5	OsPSK5	PHYTOSULFOKINE 5	phytosulfokine 5	PHYTOSULFOKINE 5		3	sulfated peptide growth factor precursor. Q9FRF9.		Os03g0675600	LOC_Os03g47230.1				GO:0005576 - extracellular region, GO:0007275 - multicellular organismal development, GO:0030154 - cell differentiation, GO:0008283 - cell proliferation		
14422	_		_	5S ribosomal RNA, 5S rRNA				M18170.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14424	_		_	5S ribosomal RNA, 5S rRNA				M18203.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
14425	_	cob-2	_	apocytochrome b pseudogene			Mt	X533699.									
14426	PRO13A.2	Prol-19, OsEnS-94, RM1, OsRM1, pro13a.2, OsPRO13A.2, PROLM26	13 KDA PROLAMIN A.2	16 kDa major rice prolamin, endosperm-specific gene 94, Prolamin 26, 13 kDa prolamin A.2	13 KDA PROLAMIN A.2		7	X60979. EF122450. AB016503. AU094552. LOC_Os07g10580 (Yoon et al. 2012). a cysteine-rich 13 kDa prolamin in Saito et al. 2012. PROLM26 in Huang et al. 2016, Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0206500	LOC_Os07g10580.1				GO:0045735 - nutrient reservoir activity, GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
14427	EEF1B'	eEF-1beta', EF-1beta'	EUKARYOTIC ELONGATION FACTOR 1-BETA'	elongation factor 1 beta'	EUKARYOTIC ELONGATION FACTOR 1-BETA'		7	D12821. P29545. Elongation factor 1 beta  in Wierbowski et al. 2020.	 Biochemical character	Os07g0662500	LOC_Os07g46750.1				GO:0003746 - translation elongation factor activity, GO:0005853 - eukaryotic translation elongation factor 1 complex		
14428	_	HRGP	_	hydroxyproline-rich glycoprotein			4	X61280.									
14429	_	Osgrp-1	_	glycine-rich protein 1			12	a glycine-rich cell wall protein. X53596. A2ZJC9, A3CG83. LOC_Os12g13840. Os12g0241300 (in Rap3 (build5)).			LOC_Os12g13840				GO:0005618 - cell wall, GO:0005576 - extracellular region		
14431	_	GRP, Osgrp-2, OsGRP-2, GRCWP, OsGRP2, GRP2	_	glycine-rich protein, Glycine-rich protein 2, glycine-rich cell wall protein		osgrp2	10	a virus-inducible, glycine-rich protein. X54449. U40708. BF889438. P0C5C7, A3C5A7.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Disease resistance	Os10g0450900	LOC_Os10g31330.6, LOC_Os10g31330.5, LOC_Os10g31330.3, LOC_Os10g31330.1, LOC_Os10g31330.2				GO:0048657 - tapetal cell differentiation, GO:0050832 - defense response to fungus, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0010152 - pollen maturation, GO:0009611 - response to wounding, GO:0009555 - pollen development, GO:0048658 - tapetal layer development	TO:0000639 - seed fertility, TO:0000437 - male sterility, TO:0000421 - pollen fertility, TO:0000137 - days to heading, TO:0000040 - panicle length, TO:0000074 - blast disease, TO:0000148 - viral disease resistance, TO:0000455 - seed set percent	PO:0009037 - lemma , PO:0009038 - palea , PO:0001016 - L mature pollen stage , PO:0001004 - anther development stage , PO:0009066 - anther , PO:0009072 - plant ovary , PO:0025395 - floral organ , PO:0009071 - anther wall tapetum , PO:0001007 - pollen development stage 
14432	_	OsIRL1	_	intracellular Ras-group-related LRR protein 1			4	Q7XNY1.		Os04g0605300	LOC_Os04g51580.1, LOC_Os04g51580.2						
14433	_	OsIRL2	_	intracellular Ras-group-related LRR protein 2			2	Q6ZH85.		Os02g0593600	LOC_Os02g38040.1						
14434	_	OsIRL3, IRL3	_	intracellular Ras-group-related LRR protein 3			4	Q7XK44. LOC_Os04g40080. GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os04g0476700	LOC_Os04g40080.1				GO:0010043 - response to zinc ion	TO:0000351 - zinc sensitivity	
14435	_	OsIRL5	_	intracellular Ras-group-related LRR protein 5			10	Q8S7M7.		Os10g0572300	LOC_Os10g42190.1, LOC_Os10g42190.2				GO:0009416 - response to light stimulus		
14437	_	OsIRL7	_	intracellular Ras-group-related LRR protein 7			3	B9F655.		Os03g0212200	LOC_Os03g11360.1, LOC_Os03g11360.2, LOC_Os03g11360.3						
14438	_	OsIRL8	_	intracellular Ras-group-related LRR protein 8			10	Q7XDQ7.		Os10g0456200	LOC_Os10g31790.1, LOC_Os10g31790.2						
14439	_	RAc2	_	Actin 2, Actin1			10	P0C539, A3C6D7. X15864. D15628. Actin1 in Sasaki et al. 1994.		Os10g0510000	LOC_Os10g36650.1				GO:0005737 - cytoplasm, GO:0005856 - cytoskeleton, GO:0005524 - ATP binding		
14440	_	RAc3	_	Actin 3			3	A2XNS1, Q10AZ4. X15862.		Os03g0836000	LOC_Os03g61970.1				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005856 - cytoskeleton		
14441	AC7	RAc7, OsAc7	ACTIN 7	Actin 7	ACTIN 7		1	P0C542, P0C540. X15863.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Seed - Physiological traits	Os01g0866100	LOC_Os01g64630.1, LOC_Os01g64630.2, LOC_Os01g64630.4				GO:0009738 - abscisic acid mediated signaling, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0001666 - response to hypoxia, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005524 - ATP binding, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0080140 - regulation of jasmonic acid metabolic process, GO:0034059 - response to anoxia, GO:0009740 - gibberellic acid mediated signaling, GO:0005737 - cytoplasm, GO:0005856 - cytoskeleton	TO:0000430 - germination rate, TO:0000015 - oxygen sensitivity, TO:0001007 - coleoptile length	
14442	NAL21	cyc07, T151, OsNAL21, OsRPS3A, RPS3A, RPS3aA, OsRPS3aA	NARROW LEAF 21	narrow leaf21, ribosomal protein S3A	RIBOSOMAL PROTEIN S3A	nal21	3	D26060. P49397. GO:2000024: regulation of leaf development. TO:0000748: leaf morphology trait. PO:0030123: panicle inflorescence. TO:0000756: stem internode morphology trait. TO:0000820: leaf vein morphology trait.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle	Os03g0200500	LOC_Os03g10340.1				GO:0009733 - response to auxin stimulus, GO:0010482 - regulation of epidermal cell division, GO:0009965 - leaf morphogenesis, GO:0048366 - leaf development, GO:0051302 - regulation of cell division, GO:0005783 - endoplasmic reticulum, GO:0005840 - ribosome, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0006413 - translational initiation, GO:0001558 - regulation of cell growth, GO:0045727 - positive regulation of translation, GO:0032790 - ribosome disassembly, GO:0042255 - ribosome assembly	TO:0000145 - internode length, TO:0000040 - panicle length, TO:0000146 - seed length, TO:0000346 - tiller number, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000655 - leaf development trait, TO:0000470 - vascular tissue related trait, TO:0000163 - auxin sensitivity, TO:0000207 - plant height	PO:0000025 - root tip , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0001050 - leaf development stage , PO:0009005 - root , PO:0000055 - bud , PO:0000016 - lateral root primordium 
14443	HSP82A	OsHSP82A, hsp82A, HSP90, OsHSP90, OsHSP81, HSP81	HEAT SHOCK PROTEIN 82A	Heat shock protein 82A	HEAT SHOCK PROTEIN 82A		8	Z11920. A2YWQ1, Q0J4P2. HSP90 in Gho et al. 2017. OsHSP81 in Lin et al. 2018. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0500700	LOC_Os08g39140.4, LOC_Os08g39140.3, LOC_Os08g39140.2, LOC_Os08g39140.1				GO:0006457 - protein folding, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0052543 - callose deposition in cell wall, GO:0050832 - defense response to fungus, GO:0009607 - response to biotic stimulus, GO:0006950 - response to stress	TO:0000074 - blast disease	
14444	HSP82D	OsHSP82D, hsp82D	HEAT SHOCK PROTEIN 82D	Heat shock protein 82D	HEAT SHOCK PROTEIN 82D			Z15024.	 Tolerance and resistance - Stress tolerance						GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0006457 - protein folding		
14445	HSP82C	OsHSP82C, hsp82C	HEAT SHOCK PROTEIN 82C	Heat shock protein 82C	HEAT SHOCK PROTEIN 82C				 Tolerance and resistance - Stress tolerance								
14446	_	HSP70, hsp70	_	HEAT SHOCK PROTEIN 70KD					 Tolerance and resistance - Stress tolerance								
14447	_	ORF79, orf79	_				Mt	D14339. KC188737, KC188738. AP011077 (Indica Group mitochondrial DNA, complete genome).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion		
14448	HMGRI	HMGR I, OsHMGRI, Hmg1, HMGR1, HMGR 1, OsHMGR1	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE I	3-hydroxy-3-methylglutaryl coenzyme A reductase I, 3-hydroxy-3-methylglutaryl-CoA reductase 1, HMG-CoA reductase 1	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE I		2	L28995. A2X8W3, Q0DY59. GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0713900	LOC_Os02g48330.1				GO:0016021 - integral to membrane, GO:0050661 - NADP or NADPH binding, GO:0008299 - isoprenoid biosynthetic process, GO:0005789 - endoplasmic reticulum membrane, GO:0015936 - coenzyme A metabolic process, GO:0009416 - response to light stimulus, GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity	TO:0000674 - phytochemical compound content, TO:0000074 - blast disease, TO:0000075 - light sensitivity	
14449	_		_	Aldolase			1	D10419.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0118000	LOC_Os01g02880.1				GO:0004332 - fructose-bisphosphate aldolase activity, GO:0006096 - glycolysis		
14450	GAPC1	OsGapC1, OsGapC3	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 1	glyceraldehydephosphate dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH1, cytosolic glyceraldehyde-3-phosphate dehydrogenase 1	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 1		2	D10409. Q6K5G8. D15096. OsGapC3 in Wierbowski et al. 2020.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0601300	LOC_Os02g38920.1				GO:0006096 - glycolysis, GO:0050661 - NADP or NADPH binding, GO:0051287 - NAD or NADH binding, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity		
14451	PGK4	PGK, OsPGK4	PHOSPHOGLYCERATE KINASE 4	"phosphoglycerate kinase, \"phosphoglycerate kinase, cytosolic\", Phosphoglycerate kinase 4, Phosphoglycerate kinase-4"	PHOSPHOGLYCERATE KINASE 4		6	D10408. D23092. LOC_Os06g45710. OsPGK4 in Joshi et al. 2015.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0668200	LOC_Os06g45710.1				GO:0004618 - phosphoglycerate kinase activity, GO:0006096 - glycolysis, GO:0009408 - response to heat, GO:0005737 - cytoplasm	TO:0000432 - temperature response trait	
14452	_		_	elongation factor 2			2	LOC_Os02g32030.1. D21278. enolase in Umeda et al. 1994.	 Tolerance and resistance - Stress tolerance	Os02g0519900	LOC_Os02g32030.1				GO:0006184 - GTP catabolic process, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0003746 - translation elongation factor activity		
14453	PK3	OsPK3, OsPK5, PK5	PYRUVATE KINASE 3	pyruvate kinase, pyruvate kinase 3	PYRUVATE KINASE 3	ospk3	4	D17768. D22530. EU267984. cytosolic pyruvate kinase (PKc) subunit. OsPK5 in Zhu et al. 2022. PO:0030104: caryopsis fruit. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Physiological traits - Storage substances	Os04g0677500	LOC_Os04g58110.1				GO:0009660 - amyloplast organization, GO:0004743 - pyruvate kinase activity, GO:0042542 - response to hydrogen peroxide, GO:0010446 - response to alkalinity, GO:0009651 - response to salt stress, GO:0010431 - seed maturation, GO:0009915 - phloem loading, GO:0015770 - sucrose transport, GO:0005739 - mitochondrion, GO:0009960 - endosperm development, GO:0000287 - magnesium ion binding, GO:0005737 - cytoplasm, GO:0048316 - seed development, GO:0006096 - glycolysis, GO:0030955 - potassium ion binding	TO:0000590 - grain weight, TO:0000266 - chalky endosperm, TO:0000104 - floury endosperm, TO:0000207 - plant height, TO:0000487 - endosperm color, TO:0002655 - starch grain size, TO:0002656 - starch grain shape, TO:0000696 - starch content, TO:0000602 - total fat content, TO:0000598 - protein content, TO:0000653 - seed development trait, TO:0000488 - seed composition based quality trait, TO:0000382 - 1000-seed weight, TO:0000196 - amylose content, TO:0000449 - grain yield per plant, TO:0006001 - salt tolerance, TO:0000481 - alkali sensitivity, TO:0000399 - grain thickness	PO:0000071 - companion cell , PO:0008003 - fruit vascular system , PO:0005360 - aleurone layer , PO:0008006 - nucellar epidermis , PO:0020141 - stem node , PO:0020142 - stem internode , PO:0004006 - mesophyll cell , PO:0025034 - leaf , PO:0007632 - seed maturation stage , PO:0005020 - vascular bundle , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0007633 - endosperm development stage , PO:0000077 - sclerenchyma cell 
14454	_		_	dihydrolipoamide acetyltransferase				D10961.	 Tolerance and resistance - Stress tolerance,  Biochemical character								
14455	_		_	isocitrate dehydrogenase, isocitrate dehydrogenase (NADP+)			1	LOC_Os01g46610. D21069. D15280. isocitrate dehydrogenase (NADP+) in Sasaki et al. 1994.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0654500	LOC_Os01g46610.1				GO:0004450 - isocitrate dehydrogenase (NADP+) activity, GO:0051287 - NAD or NADH binding, GO:0000287 - magnesium ion binding, GO:0006102 - isocitrate metabolic process, GO:0006099 - tricarboxylic acid cycle		
14456	_		_	succinyl-CoA synthetase				D10415.	 Tolerance and resistance - Stress tolerance,  Biochemical character								
14457	_		_	succinate dehydrogenase (flavoprotein subunit)				D17769.	 Biochemical character,  Tolerance and resistance - Stress tolerance								
14458	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA				D17770.	 Tolerance and resistance - Stress tolerance								
14459	CYB5-4	OsCYB5-4	CYTOCHROME B5-4	cytochrome b5, cytochrome b-5, cytochrome b5-4	CYTOCHROME B5-4		5	X75670. P49100. D29702.	 Biochemical character	Os05g0108800	LOC_Os05g01820.1				GO:0046872 - metal ion binding, GO:0055114 - oxidation reduction, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane		
14460	RPL5	rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p	RIBOSOMAL PROTEIN L5	ribosomal protein L5, Ribosomal protein L5a, Ribosomal protein L5b	RIBOSOMAL PROTEIN L5		1	LOC_Os01g67134.1 X64622. A2WXX3, Q0JGY1. D15270, D15082. a ribosomal 5S rRNA-binding protein. Ribosomal protein L5a and Ribosomal protein L5b in Sasaki et al. 1994. RPL18p/L5e in Moin et al. 2016.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os01g0896800	LOC_Os01g67134.1				GO:0000027 - ribosomal large subunit assembly, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005840 - ribosome, GO:0005634 - nucleus, GO:0006412 - translation, GO:0008097 - 5S rRNA binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0020032 - plumule , PO:0025034 - leaf , PO:0009006 - shoot system 
14461	_	psaI, ORF36	_	photosystem I subunit VIII			Pt	X15901: CAA33957 (Japonica group plastid genome). P12186. LOC_Osp1g00450. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00450				GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0009522 - photosystem I, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis		
14462	RPL23.P	rpl23.p	RIBOSOMAL PROTEIN L23 PSEUDOGENE	ribosomal protein L23 pseudogene, rpl23 pseudogene			Pt	X15901 (Japonica group plastid genome). 									
14463	EEF1B	eEF-1beta, EF-1beta	EUKARYOTIC ELONGATION FACTOR 1-BETA	elongation factor 1 beta, elongation factor 1-beta	EUKARYOTIC ELONGATION FACTOR 1-BETA		7	D23674. Q40680. D16057. Elongation factor 1 delta  in Wierbowski et al. 2020.	 Biochemical character	Os07g0614500	LOC_Os07g42300.1				GO:0005853 - eukaryotic translation elongation factor 1 complex, GO:0003746 - translation elongation factor activity		
14464	LIR1	Lir1, OsLIR1, Os-LIR1	LIGHT-REGULATED GENE 1	light-regulated gene 1, LIGHT-INDUCED RICE1, LIGHT-INDUCED RICE 1		Os-lir1, lir1, lir1-1, lir1-2, lir1-3	1	X68807. Q03200. LOC_Os01g01340.	 Tolerance and resistance - Stress tolerance	Os01g0102900	LOC_Os01g01340.1, LOC_Os01g01340.2				GO:0009507 - chloroplast, GO:0009535 - chloroplast thylakoid membrane, GO:0009767 - photosynthetic electron transport chain, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity	
14465	_	UBC, OsUBC	_	Ubiquitin conjugating enzyme				U15971.	 Biochemical character						GO:0016881 - acid-amino acid ligase activity		
14466	RPOB	rpoB	RNA POLYMERASE SUBUNIT B	RNA polymerase beta chain	RNA POLYMERASE SUBUNIT B		Mt	D13109 (a transferred chloroplast DNA sequence), X93217 (mitochondrial rpoB pseudogene).	 Biochemical character								
14467	_	OVP1	_	vacuolar H+-pyrophosphatase 1, V-PPase 1, class I V-PPase, vacuolar H-translocating inorganic pyrophosphatase 1			6	D45383. AB012765. LOC_Os06g43660.	 Biochemical character	Os06g0644200	LOC_Os06g43660.1, LOC_Os06g43660.2, LOC_Os06g43660.3				GO:0004427 - inorganic diphosphatase activity, GO:0009678 - hydrogen-translocating pyrophosphatase activity, GO:0015992 - proton transport, GO:0016020 - membrane		
14468	OVP2	OsOVP2	VACUOLAR H+-PYROPHOSPHATASE 2	vacuolar H+-pyrophosphatase 2, V-PPase 2, class II V-PPase	VACUOLAR H+-PYROPHOSPHATASE 2		6	D45384.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0178900	LOC_Os06g08080.1				GO:0016020 - membrane, GO:0004427 - inorganic diphosphatase activity, GO:0009651 - response to salt stress, GO:0009678 - hydrogen-translocating pyrophosphatase activity, GO:0015992 - proton transport	TO:0006001 - salt tolerance	PO:0009005 - root , PO:0025034 - leaf 
14469	_	p26	_	cap-binding protein p26			1	U34597. P48599.	 Other	Os01g0970400	LOC_Os01g73880.1				GO:0003743 - translation initiation factor activity, GO:0006417 - regulation of translation, GO:0005737 - cytoplasm		
14470	EIFISO4E	p28, eIFiso4E, OsEIFISO4E	_	cap-binding protein p28, small cap-binding protein eIFiso4E			10	U34598. P48600.	 Other	Os10g0467600	LOC_Os10g32970.1				GO:0005737 - cytoplasm, GO:0003743 - translation initiation factor activity, GO:0006417 - regulation of translation		
14471	PRO13B.14	PG5b, Prol-08, pro13b.14, OsPRO13B.14	13 KDA PROLAMIN B.14	13 kDa prolamin B.14	13 KDA PROLAMIN B.14		5	D73384. S72972 (partial). LOC_Os05g26440 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0329400	LOC_Os05g26440.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
14472	_	RAG2, RA14B, RA14, OsEnS-98	_	rice allergen 14B, endosperm-specific gene 98	_		7	rice seed allergenic protein (RA). D11434. D42139. Q01882. a 16-kDa a-amylase/trypsin inhibitor.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Grain quality,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits - Longevity	Os07g0214300	LOC_Os07g11380.1, LOC_Os07g11380.2				GO:0010951 - negative regulation of endopeptidase activity, GO:0009651 - response to salt stress, GO:0010431 - seed maturation, GO:0016068 - type I hypersensitivity, GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009408 - response to heat, GO:0009270 - response to humidity	TO:0000250 - vigor related trait, TO:0000435 - seed longevity, TO:0000696 - starch content, TO:0010001 - percent germination, TO:0000590 - grain weight, TO:0000345 - seed viability, TO:0000441 - humidity related trait, TO:0000259 - heat tolerance, TO:0000602 - total fat content, TO:0000598 - protein content, TO:0000196 - amylose content, TO:0000653 - seed development trait, TO:0000382 - 1000-seed weight, TO:0000162 - seed quality, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0006001 - salt tolerance	PO:0007632 - seed maturation stage 
14473	_	SRP19	_	signal recognition particle 19			6	U19030. P49964.	 Other	Os06g0342100	LOC_Os06g23430.1, LOC_Os06g23430.2				GO:0006614 - SRP-dependent cotranslational protein targeting to membrane, GO:0008312 - 7S RNA binding, GO:0005786 - signal recognition particle, endoplasmic reticulum targeting		
14474	_	b21	_	lipid transfer protein b21				X83433.  a class III LTP (Vignols et al. 1997).									
14475	EIF4A1	eIF-4a, EIF4A, OseIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4	EUKARYOTIC INITIATION FACTOR 4A-1	EUKARYOTIC INITIATION FACTOR 4A, eukaryotic initiation factor 4A-1, initiation factor eIF-4A, initiation factor eIF-4AII, RNA helicase 4	EUKARYOTIC INITIATION FACTOR 4A-1		6	D12627. D10398 (partial cds). P35683. AB046416. D16090. D29715. initiation factor eIF-4AII in Sasaki et al. 1994. DEAD-box RNA helicase protein. rice ortholog of NbeIF4A.  OseIF4A mRNA is targeted by vsiRNA-4A (viral small interfering RNA 4A)  for cleavage (Zhang et al. 2021).	 Tolerance and resistance - Disease resistance	Os06g0701100	LOC_Os06g48750.1, LOC_Os06g48750.2, LOC_Os06g48750.3				GO:0003743 - translation initiation factor activity, GO:0009615 - response to virus, GO:0051607 - defense response to virus, GO:0010507 - negative regulation of autophagy, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding	TO:0000148 - viral disease resistance	
14476	POLA	OSPOLA, Ospolalpha, OsDNAP, DNAP	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	DNA polymerase alpha catalytic subunit, catalytic subunit of DNA polymerase alpha, DNA polymerase alpha protein	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT		1	AB004461. O48653.	 Biochemical character	Os01g0868300	LOC_Os01g64820.1				GO:0006270 - DNA replication initiation, GO:0046872 - metal ion binding, GO:0006273 - lagging strand elongation, GO:0001882 - nucleoside binding, GO:0005634 - nucleus, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0000166 - nucleotide binding, GO:0003677 - DNA binding, GO:0003887 - DNA-directed DNA polymerase activity, GO:0003896 - DNA primase activity		
14477	_		_	reverse transcriptase				Y13370.	 Other						GO:0006278 - RNA-dependent DNA replication, GO:0003723 - RNA binding, GO:0003964 - RNA-directed DNA polymerase activity		
14478	_		_	reverse transcriptase				Y13371.	 Other								
14479	IMPA2		IMPORTIN ALPHA 2	importin alpha			1	AB006788, D78504. Q9FYP9.		Os01g0158000	LOC_Os01g06470.1				GO:0005634 - nucleus, GO:0048471 - perinuclear region of cytoplasm, GO:0008565 - protein transporter activity, GO:0006606 - protein import into nucleus		
14480	ENOD93A	OsENOD93a	EARLY NODULIN 93A	early nodulin 93A	EARLY NODULIN 93A		6	AB018376, AB018375. LOC_Os06g04990.		Os06g0142200 	LOC_Os06g04990.1				GO:0005739 - mitochondrion		
14481	ENOD93B	OsENOD93b	EARLY NODULIN 93B	early nodulin 93b	EARLY NODULIN 93B		2	AB018377. D15436. acyl-[acyl-carrier-protein] desaturase. 		Os02g0227200	LOC_Os02g13380.1						
14482	WGL2	rps9, OsRPS9, OsWGL2	WHITE GREEN LEAF 2	ribosomal protein S9, chloroplast ribosomal protein S9, plastid ribosomal protein S9, white green leaf 2	RIBOSOMAL PROTEIN S9	wgl2	3	LOC_Os03g55930. AB022675.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Other	Os03g0769100 	LOC_Os03g55930.1				GO:0009507 - chloroplast, GO:0006412 - translation, GO:0009658 - chloroplast organization, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome	TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000298 - chlorophyll ratio, TO:0000496 - carotenoid content	PO:0025034 - leaf 
14483	PDK1	OsPdk1, Pdk1, OsAGC3, AGC3	3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1	3-phosphoinositide-dependent protein kinase-1, 3-phosphoinositide-dependent protein kinase 1, AGC protein kinase 3	3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1	ospdk1	1	AF132743. GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0872800	LOC_Os01g65230.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0015979 - photosynthesis, GO:0005634 - nucleus, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	PO:0000003 - whole plant 
14484	LAC4	Oslacc, lacc, OsLAC4, OsLAC17, LAC17	LACCASE 4	lactase, laccase 4	LACCASE 4		1	AF047697. Q5N9X2. laccase-like multicopper oxidase. LMCO. GO:0052716: hydroquinone:oxygen oxidoreductase activity. OsLAC17 in Sun et al. 2020.	 Biochemical character	Os01g0842400	LOC_Os01g62480.1				GO:0048046 - apoplast, GO:0046274 - lignin catabolic process, GO:0005507 - copper ion binding		
14485	_	aie1a	_	anaerobically inducible early gene 1a				AF014931.	 Tolerance and resistance - Stress tolerance								
14486	_	aie1b	_	anaerobically inducible early gene 1b				AF014932.	 Tolerance and resistance - Stress tolerance								
14487	_	aie2	_	anaerobically inducible early gene 2				AF014930.	 Tolerance and resistance - Stress tolerance								
14488	_	Tourist-OsaCatA	_	Tourist element			2	AB018051-AB018073 (O. sativa and other wild rice species). Tourist elements are found in CatA(D29966), Xa21(U72724), LRK2(X89226), Gns9(U72255) etc.	 Other						GO:0032196 - transposition		
14489	_	PLA2-I	_	phospholipase A2-I			2	a low-molecular-weight calcium-dependent phospholipase A2. AJ238116. Q9XG80. D49050.	 Biochemical character	Os02g0831700	LOC_Os02g58500.1				GO:0004623 - phospholipase A2 activity, GO:0006644 - phospholipid metabolic process, GO:0016042 - lipid catabolic process, GO:0005509 - calcium ion binding, GO:0005576 - extracellular region		
14490	_	PLA2-II	_	phospholipase A2-II			3	a low-molecular-weight calcium-dependent phospholipase A2. AJ238117. Q9XG81. D47320, D47653, D47724.	 Biochemical character	Os03g0261100	LOC_Os03g15460.1				GO:0016042 - lipid catabolic process, GO:0005509 - calcium ion binding, GO:0005576 - extracellular region, GO:0004623 - phospholipase A2 activity, GO:0008289 - lipid binding, GO:0006644 - phospholipid metabolic process		
14491	_	IF1-1	_	F1F0-ATPase inhibitor protein 1-1			8	AB029059. 	 Biochemical character	Os08g0558900	LOC_Os08g44460.1, LOC_Os08g44460.2, LOC_Os08g44460.3				GO:0043086 - negative regulation of catalytic activity, GO:0045980 - negative regulation of nucleotide metabolic process, GO:0005739 - mitochondrion, GO:0004857 - enzyme inhibitor activity		
14492	_	IF1-2	_	F1F0-ATPase inhibitor protein 1-2			9	AB029060. 	 Biochemical character	Os09g0568900	LOC_Os09g39550.1						
14493	VDAC1	OSVDAC1, osvdac1, OsVDAC1	VOLTAGE-DEPENDENT ANION CHANNEL 1	voltage-dependent anion channel 1, voltage-dependent anion-selective channel 1	VOLTAGE-DEPENDENT ANION CHANNEL 1	vdac1-2	9	Y18104. Q6K548. TO:0020102: phosphate content.	 Biochemical character	Os09g0361400	LOC_Os09g19734.1, LOC_Os09g19734.2, LOC_Os09g19734.3, LOC_Os09g19734.4				GO:0008308 - voltage-gated anion channel activity, GO:0015288 - porin activity, GO:0051881 - regulation of mitochondrial membrane potential, GO:0046930 - pore complex, GO:0006915 - apoptosis, GO:0005741 - mitochondrial outer membrane		
14494	_	OsPAA1, PAA1	_	20S proteasome alpha1 subunit			3	AB026558, D49098. Q9LSU3.	 Biochemical character	Os03g0180400	LOC_Os03g08280.1, LOC_Os03g08280.2, LOC_Os03g08280.3				GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0005737 - cytoplasm, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process		
14495	TT1	OsPAB1, PAB1, OsTT1	THERMO-TOLERANCE 1	20S proteasome alpha2 subunit, Thermo-tolerance 1			3	AB026559, D40076. Q10KF0. KR054757 (Oryza glaberrima, OgTT1).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0387100	LOC_Os03g26970.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
14496	_	OsPAC1	_	20S proteasome alpha3 subunit			6	AB026560, D41015. P0C1G8.	 Biochemical character	Os06g0176000	LOC_Os06g07878.1				GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0019773 - proteasome core complex, alpha-subunit complex		
14497	_	OsPAD1	_	20S proteasome alpha4 subunit			9	AB032061, C74810. Q0J006.	 Biochemical character	Os09g0538200	LOC_Os09g36710.1				GO:0004298 - threonine-type endopeptidase activity, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
14498	_	OsPAE1, PAE1	_	20S proteasome alpha5 subunit, 20S PROTEASOME ALPHA SUBUNIT E1			11	AB026561, D24985. Q9LSU1.	 Biochemical character	Os11g0615700	LOC_Os11g40140.1				GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm		
14499	_	OsPAG1, OsPSA7	_	20S proteasome alpha7 subunit, 20S proteasome subunit alpha7			1	AB026562, D40644. Q9LSU0.	 Biochemical character	Os01g0811100	LOC_Os01g59600.1, LOC_Os01g59600.2				GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm		
14500	_	OsPBA1	_	20S proteasome beta1 subunit			2	AB026563, D41150.	 Biochemical character	Os02g0770000 	LOC_Os02g53060.1, LOC_Os02g53060.2				GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005839 - proteasome core complex, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus		
14501	_	OsPBB1, PUP1	_	20S proteasome beta2 subunit, proteasome component PUP1			5	AB026564, D15408.	 Biochemical character	Os05g0187000 	LOC_Os05g09490.1, LOC_Os05g09490.2				GO:0005737 - cytoplasm, GO:0005839 - proteasome core complex, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process		
14502	_	OsPBC1	_	20S proteasome beta3 subunit			6	AB026565, AA752242. Q9LST7.	 Biochemical character	Os06g0643100	LOC_Os06g43570.1				GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005839 - proteasome core complex		
14503	_	OsPBD1	_	20S proteasome beta4 subunit			3	AB026566, D24758. Q9LST6.	 Biochemical character	Os03g0695600	LOC_Os03g48930.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004298 - threonine-type endopeptidase activity, GO:0005839 - proteasome core complex		
14504	_	OsPBE1	_	20S proteasome beta5 subunit			6	AB026567, D48392. D15525.	 Biochemical character	Os06g0153800	LOC_Os06g06030.1				GO:0005839 - proteasome core complex, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004298 - threonine-type endopeptidase activity		
14505	_	OsPBG1	_	20S proteasome beta7 subunit			9	AB026568, D15785. 	 Biochemical character	Os09g0515200 	LOC_Os09g33986.1, LOC_Os09g33986.2				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0005839 - proteasome core complex, GO:0004298 - threonine-type endopeptidase activity, GO:0005634 - nucleus		
14506	MST1	OsMST1, OsSTP1, STP1	MONOSACCHARIDE TRANSPORTER 1	monosaccharide transporter 1, Sugar Transport Protein 1, STP protein 1, monosaccharide transporter STP1	MONOSACCHARIDE TRANSPORTER 1	mst1	4	D25142, AB052883.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0452700	LOC_Os04g37980.1				GO:0009750 - response to fructose stimulus, GO:0009744 - response to sucrose stimulus, GO:0009749 - response to glucose stimulus, GO:0006970 - response to osmotic stress, GO:0016021 - integral to membrane, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0009555 - pollen development	TO:0000300 - glucose content, TO:0006005 - fructose content, TO:0000696 - starch content, TO:0000095 - osmotic response sensitivity, TO:0000238 - growth media composition sensitivity, TO:0000053 - pollen sterility	PO:0020103 - flag leaf , PO:0001007 - pollen development stage , PO:0009005 - root , PO:0009066 - anther , PO:0025034 - leaf 
14507	MST2	OsMST2, OsSTP2, STP2	MONOSACCHARIDE TRANSPORTER 2	monosaccharide transporter 2, Sugar Transport Protein 2, STP protein 2, monosaccharide transporter STP2	MONOSACCHARIDE TRANSPORTER 2		3	D46606, AB052884. Q851G4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0594400	LOC_Os03g39710.1				GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	PO:0020104 - leaf sheath 
14508	MST3	OsMST3, OsSTP3, STP3	MONOSACCHARIDE TRANSPORTER 3	monosaccharide transporter 3, Sugar Transport Protein 3, STP protein 3, monosaccharide transporter STP3	MONOSACCHARIDE TRANSPORTER 3		7	D40232, AB052885. Q7EZD7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0106200	LOC_Os07g01560.1, LOC_Os07g01560.2				GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016020 - membrane, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0015293 - symporter activity, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	PO:0009005 - root , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0020104 - leaf sheath 
14509	PP2A-A	PP2A-A, RPA1	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A	protein phosphatase 2A A subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A		9	AJ243828, AJ243829, D21972. LOC_Os09g07510. HEAT repeat family protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os09g0249700	LOC_Os09g07510.1, LOC_Os09g07510.2, LOC_Os09g07510.3				GO:0007126 - meiosis		
14510	_		_	vacuolar H+-ATPase B subunit pseudogene, V-ATPase B pseudogene	_		5	AB055105. AM179944-AM179987 (O. sativa and O. rufipogon).									
14511	TSN	Rp120, OsTSN	TUDOR-SN	cytoskeleton-associated 120 kDa RNA-binding protein, OsTudor-SN, Tudor-SN, scaffolding-nuclease protein Tudor-SN	TUDOR-SN		2	AY320036. 	 Biochemical character	Os02g0523500	LOC_Os02g32350.1, LOC_Os02g32350.2				GO:0006401 - RNA catabolic process, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0031047 - gene silencing by RNA, GO:0003676 - nucleic acid binding, GO:0008298 - intracellular mRNA localization, GO:0005634 - nucleus, GO:0004518 - nuclease activity, GO:0003723 - RNA binding, GO:0005737 - cytoplasm, GO:0016442 - RNA-induced silencing complex		
14512	UCP1	OsUCP1	UNCOUPLING PROTEIN 1	uncoupling protein 1	UNCOUPLING PROTEIN 1		1	AB049997.	 Tolerance and resistance - Stress tolerance	Os01g0978000	LOC_Os01g74640.3, LOC_Os01g74640.2, LOC_Os01g74640.1				GO:0031966 - mitochondrial membrane, GO:0006839 - mitochondrial transport, GO:0016021 - integral to membrane		
14513	_	OsUCP2	_	uncoupling protein 2			11	AB049998.	 Tolerance and resistance - Stress tolerance	Os11g0707800	LOC_Os11g48040.1				GO:0006839 - mitochondrial transport, GO:0031966 - mitochondrial membrane, GO:0016021 - integral to membrane		
14514	_	U14.1	_	box C/D snoRNA U14.1, U14.1 box C/D snoRNA, U14.1 snoRNA			2	AF332622.									
14515	_	U14.2	_	box C/D snoRNA U14.2, U14.2 box C/D snoRNA, U14.2 snoRNA			2	AF332622.									
14516	POLD1	OsPoldelta1, OspolD1	POLYMERASE (DNA DIRECTED), DELTA 1	pol delta catalytic subunit, DNA polymerase delta 1, OsPol delta large subunit	POLYMERASE (DNA DIRECTED), DELTA 1		11	AB037899. Q9LRE6.	 Biochemical character	Os11g0186400	LOC_Os11g08330.1				GO:0000166 - nucleotide binding, GO:0003887 - DNA-directed DNA polymerase activity, GO:0043625 - delta DNA polymerase complex, GO:0045004 - DNA replication proofreading, GO:0006297 - nucleotide-excision repair, DNA gap filling, GO:0043137 - DNA replication, removal of RNA primer, GO:0007346 - regulation of mitotic cell cycle, GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006287 - base-excision repair, gap-filling, GO:0008408 - 3'-5' exonuclease activity		
14517	POLD2	OsPoldelta2, OspolD2	POLYMERASE (DNA DIRECTED), DELTA 2	pol delta small subunit, DNA polymerase delta 2, OsPol delta small subunit	POLYMERASE (DNA DIRECTED), DELTA 2		3	AB037900, D24468. Q9LRE5.	 Biochemical character	Os03g0128500	LOC_Os03g03650.1				GO:0005634 - nucleus, GO:0006260 - DNA replication, GO:0003887 - DNA-directed DNA polymerase activity, GO:0003677 - DNA binding		
14518	_	IRL	_	isoflavone reductase-like protein			1	AP002863.	 Tolerance and resistance - Stress tolerance								
14519	CHR711	Snf2P, OsSnf2P, OsCHR711	CHROMATIN REMODELING FACTOR 711	SNF2 family protein, chromatin remodeling factor 711	CHROMATIN REMODELING FACTOR 711		3	AF459086, AF459087. AU100698, C26323. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Other	Os03g0101700	LOC_Os03g01200.1				GO:0003677 - DNA binding, GO:0004386 - helicase activity, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding	TO:0000074 - blast disease	
14520	FKI	OsFKI, OsFK2, FK2	FRUCTOKINASE I	fructokinase I, Fructokinase 2	FRUCTOKINASE I		1	AF429948. A2WXV8, Q0JGZ6. OsFK2 in Guglielminetti et al. 2006 and Guglielminetti et al. 2014.	 Seed - Physiological traits - Storage substances,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0894300	LOC_Os01g66940.1				GO:0004747 - ribokinase activity, GO:0019252 - starch biosynthetic process, GO:0034059 - response to anoxia, GO:0045471 - response to ethanol, GO:0006014 - D-ribose metabolic process, GO:0008865 - fructokinase activity, GO:0005524 - ATP binding	TO:0000015 - oxygen sensitivity	
14522	_	OSVDAC2, osvdac2, OsVDAC2, VDAC2	_	voltage-dependent anion channel 2, voltage-dependent anion-selective channel 2			5	AJ251562. Q6L5I5. LOC_Os05g45950.	 Biochemical character	Os05g0536200	LOC_Os05g45950.1				GO:0005741 - mitochondrial outer membrane, GO:0046930 - pore complex, GO:0015288 - porin activity, GO:0006811 - ion transport		
14523	_	OSVDAC3, osvdac3, OsVDAC3, VDAC3	_	voltage-dependent anion channel 3, voltage-dependent anion-selective channel 3			1	AJ251563. Q7F4F8. LOC_Os01g40570.	 Biochemical character	Os01g0588200 	LOC_Os01g40570.1				GO:0005741 - mitochondrial outer membrane, GO:0008308 - voltage-gated anion channel activity, GO:0046930 - pore complex, GO:0015288 - porin activity		
14524	_	OSVDAC4, osvdac4, OsVDAC4, VDAC4	_	voltage-dependent anion channel 4, voltage-dependent anion-selective channel 4			1	Q0JJV1. LOC_Os01g51770.	 Biochemical character	Os01g0715500	LOC_Os01g51770.1				GO:0005741 - mitochondrial outer membrane, GO:0006811 - ion transport, GO:0015288 - porin activity, GO:0046930 - pore complex		
14525	HMGB1	OsHMGB1, OsMNB1B, MNB1B	HIGH MOBILITY GROUP PROTEIN B1	High mobility group protein B1, High mobility group subgroup B protein 1, high mobility group B1, DNA-binding protein MNB1B	HIGH MOBILITY GROUP PROTEIN B1	oshmgb1, hb1-1, hb1-5	6	AF541859. AY262827. D16074. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0728000	LOC_Os06g51220.2, LOC_Os06g51220.3, LOC_Os06g51220.4				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	
14526	BHLH1	OsbHLH1, bHLH1, OsbHLH062, bHLH062, bHLH62	BASIC HELIX-LOOP-HELIX PROTEIN 1	basic Helix-Loop-Helix protein 1, basic helix-loop-helix protein 062	BASIC HELIX-LOOP-HELIX PROTEIN 1		7	AY222337. AP004260. HQ858856. bHLH transcription factor.	 Other,  Tolerance and resistance - Stress tolerance	Os07g0628500	LOC_Os07g43530.1, LOC_Os07g43530.2				GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
14527	RML1	rml1, OsRML1, OsMSL21, MSL21	REGULATED BY M. GRISEA AND LIGHT 1	rice gene regulated by M. grisea and light 1, Myb/SANT-LIKE 21			4	AJ535489, AJ535490. AL627350, AL606998.	 Tolerance and resistance - Disease resistance,  Other	Os04g0486400	LOC_Os04g40930.1				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003682 - chromatin binding, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding		PO:0025034 - leaf , PO:0009047 - stem 
14528	_	Rad6, OsRad6, Dhr6, OsUBC9, UBC9	_	RAD6 DNA-repair homolog Dhr6, Ubiquitin-conjugating enzyme 9			3	a ubiquitin-conjugating enzyme. AB079798. D15767. LOC_Os03g57790.	 Biochemical character	Os03g0791800	LOC_Os03g57790.1, LOC_Os03g57790.2				GO:0016881 - acid-amino acid ligase activity, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000401 - plant growth hormone sensitivity	PO:0001170 - seed development stage 
14529	HAZ1	OsHAZ1, OsPHD28, PHD28	_	Plant homeo-domain finger protein 28, PHD finger protein 28			6	BGIOSGA022583. B8B494 (indica). a PHD-finger family homeobox gene. AB081340, AB081341.	 Other,  Seed - Morphological traits - Embryo	Os06g0229300 	LOC_Os06g12400.1				GO:0043565 - sequence-specific DNA binding, GO:0008270 - zinc ion binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
14530	_	HN1L	_	HN1-like gene, hematopoietic- and neurologic-expressed sequence 1-like gene			4	BK001566.		Os04g0455600	LOC_Os04g38310.1, LOC_Os04g38310.2, LOC_Os04g38310.3						
14531	_	prx1	_	class III peroxidase 1			1	BN000530.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance						GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14532	_	prx2	_	class III peroxidase 2			1	BN000531.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0205900	LOC_Os01g10850.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14533	_	prx4	_	class III peroxidase 4			1	BN000533.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0270300	LOC_Os01g16450.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14534	PRX5	prx5, OsPRX5, OsPRX9	CLASS III PEROXIDASE 5	class III peroxidase 5	CLASS III PEROXIDASE 5		1	BN000534. OsPRX9 in Zhou et al. 2022.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0263000	LOC_Os01g15810.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14535	_	prx6	_	class III peroxidase 6			1	BN000535.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance						GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
14536	_	prx7	_	class III peroxidase 7			7	BN000536.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0157000	LOC_Os07g06300.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0016020 - membrane, GO:0005215 - transporter activity		
14537	_	prx8	_	class III peroxidase 8			1	BN000537.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0293900	LOC_Os01g18930.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14538	_	prx9	_	class III peroxidase 9			1	BN000538.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0294300	LOC_Os01g18950.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14539	_	prx10	_	class III peroxidase 10			1	BN000539.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character						GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14540	_	prx12, PRX12, OsPRX12	_	class III peroxidase 12			1	BN000541.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0326000	LOC_Os01g22230.1, LOC_Os01g22230.2				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0004601 - peroxidase activity	TO:0000074 - blast disease	
14541	_	prx14	_	class III peroxidase 14			1	BN000543.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0327000	LOC_Os01g22336.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14542	_	prx15	_	class III peroxidase 15			1	BN000544.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0327100	LOC_Os01g22352.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0009809 - lignin biosynthetic process, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14543	PRX16	prx16, OsPRX16, OsPOD1, POD1	CLASS III PEROXIDASE 16	class III peroxidase 16, Peroxidase 1	CLASS III PEROXIDASE 16		1	BN000545. POD1 (Peroxidase 1) in Sudo et al. 2008, Yang et al. 2015, Xiong et al. 2018.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0327400	LOC_Os01g22370.1				GO:0006952 - defense response, GO:0009409 - response to cold, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance, TO:0000303 - cold tolerance	
14544	PRX17	prx17, OsPRX17, OsPRX72	CLASS III PEROXIDASE 17	class III peroxidase 17	CLASS III PEROXIDASE 17		1	BN000546. OsPRX72 in Zhou et al. 2022.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0543100	LOC_Os01g36240.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14545	_	prx18	_	class III peroxidase 18			1	BN000547.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance						GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14546	_	prx19	_	class III peroxidase 19			1	BN000548.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0787000	LOC_Os01g57730.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14547	PRX20	prx20, OsPRX20	PEROXIDASE 20	class III peroxidase 20, peroxidase 12	PEROXIDASE 20		1	BN000549. peroxidase 12 in Kim & Kim 2023.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0962700	LOC_Os01g73170.1				GO:0009651 - response to salt stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress	TO:0006001 - salt tolerance	
14548	_	prx21	_	class III peroxidase 21			1	BN000550.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0962900	LOC_Os01g73190.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14549	PRX22	prx22, OsPRX22, OsPOD	CLASS III PEROXIDASE 22	class III peroxidase 22, peroxidase BP1	CLASS III PEROXIDASE 22		1	BN000551. peroxidase BP1 in Ma et al. 2013.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0963000	LOC_Os01g73200.1				GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress, GO:0004601 - peroxidase activity, GO:0009809 - lignin biosynthetic process, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding	TO:0006001 - salt tolerance, TO:0000173 - ethylene sensitivity	
14550	_	prx23	_	class III peroxidase 23			1	BN000552. LOC_Os01g73220. Os01g0963200 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance		LOC_Os01g73220				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14551	PRX24	prx24, Osprx24	PEROXIDASE 24	class III peroxidase 24	PEROXIDASE 24		2	BN000553. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0161800	LOC_Os02g06630.1				GO:0046872 - metal ion binding, GO:0009408 - response to heat, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0009561 - megagametogenesis, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0000293 - guard cell 
14552	_	prx25	_	class III peroxidase 25			2	BN000554.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0237000	LOC_Os02g14180.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14553	_	prx26	_	class III peroxidase 26			2	BN000555.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0236800	LOC_Os02g14170.1, LOC_Os02g14170.2				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14554	_	prx27, PRX27, OsPRX27	_	class III peroxidase 27			2	BN000556.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0236600	LOC_Os02g14160.1				GO:0004601 - peroxidase activity, GO:0050832 - defense response to fungus, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding	TO:0000074 - blast disease	
14555	_	prx28	_	class III peroxidase 28			2	BN000557. LOC_Os02g14460. Os02g0240500 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance		LOC_Os02g14460				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14556	_	prx29	_	class III peroxidase 29			2	BN000558.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0240300	LOC_Os02g14440.1, LOC_Os02g14440.2				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14557	PRX30	prx30, OsPrx30	PEROXIDASE 30	class III peroxidase 30	PEROXIDASE 30		2	BN000559.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0240100	LOC_Os02g14430.1				GO:0020037 - heme binding, GO:0042742 - defense response to bacterium, GO:0006979 - response to oxidative stress, GO:0005783 - endoplasmic reticulum, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity	TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf 
14558	_	prx31	_	class III peroxidase 31			2	BN000560.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0741200	LOC_Os02g50770.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14559	PRX32	prx32, OsPRX32, OsPER64, PER64	PEROXIDASE 32	class III peroxidase 32	PEROXIDASE 32		2	BN000561.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0833900	LOC_Os02g58720.1, LOC_Os02g58720.2, LOC_Os02g58720.3				GO:0004601 - peroxidase activity, GO:0009664 - plant-type cell wall organization, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress	TO:0000731 - lignin content	
14560	_	prx33	_	class III peroxidase 33			3	BN000562. EF444530.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0121200	LOC_Os03g02920.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14561	_	prx34, OsPrx34	_	class III peroxidase 34			3	BN000563.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0121300	LOC_Os03g02939.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14562	_	prx35	_	class III peroxidase 35			3	BN000564.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance						GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
14563	_	prx36	_	class III peroxidase 36			3	BN000565.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0152300	LOC_Os03g05770.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14564	PRX37	prx37, OsPRX37, POD37, OsPOD37	PEROXIDASE 37	class III peroxidase 37	PEROXIDASE 37		3	BN000566. GO:0072593 reactive oxygen species metabolic process	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0234500	LOC_Os03g13180.1				GO:0009723 - response to ethylene stimulus, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0020037 - heme binding	TO:0000173 - ethylene sensitivity	
14565	PRX39	prx39, OsPRX39, OsPRX-A2, PRX-A2, POD39, OsPOD39	CLASS III PEROXIDASE 39	class III peroxidase 39	CLASS III PEROXIDASE 39		3	BN000568. OsPRX-A2 in Zhou et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0234900	LOC_Os03g13200.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0002238 - response to molecule of fungal origin, GO:0009809 - lignin biosynthetic process, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium		
14566	PRX40	prx40, Os PRX40, POD40, OsPOD40	PEROXIDASE 40	class III peroxidase 40	PEROXIDASE 40		3	BN000569.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0339400	LOC_Os03g22020.1				GO:0004601 - peroxidase activity, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14567	_	prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2	_	class III peroxidase 41, peroxidase 8.1, peroxidase 2			3	BN000570. OsPOX8.1 in Hayashi et al.2014. OsPOD2 in Yang et al. 2015, Ye at al. 2018, Xiong et al. 2018.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0339300	LOC_Os03g22010.1, LOC_Os03g22010.2, LOC_Os03g22010.3, LOC_Os03g22010.4				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0010332 - response to gamma radiation, GO:0046872 - metal ion binding		
14568	_	prx42	_	class III peroxidase 42			3	BN000571.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0368000	LOC_Os03g25280.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14569	_	prx43, OsPRX43	_	class III peroxidase 43			3	BN000572.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0368300	LOC_Os03g25300.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14570	_	prx44	_	class III peroxidase 44			3	BN000573. LOC_Os03g25320.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance		LOC_Os03g25320				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14571	PRX45	prx45, OsPRX45, OsPRX2	CLASS III PEROXIDASE 45	class III peroxidase 45	CLASS III PEROXIDASE 45		3	BN000574. OsPRX2 in Zhou et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0368900	LOC_Os03g25330.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14572	_	prx46, POD1, OSPOD1	_	class III peroxidase 46			3	BN000575. POD1 in Jin et al. 2018.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0369000	LOC_Os03g25340.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14573	_	prx47	_	class III peroxidase 47			3	BN000576. LOC_Os03g25360. Os03g0369200 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os03g25360				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity		
14574	_	prx48	_	class III peroxidase 48			3	BN000577. LOC_Os03g25370. Os03g0369400 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0369600	LOC_Os03g25370.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14575	_	prx49	_	class III peroxidase 49			3	BN000578.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0563600	LOC_Os03g36560.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14576	_	prx50	_	class III peroxidase 50			3	BN000579.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0762200					GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14577	_	prx51	_	class III peroxidase 51			3	BN000580.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0762400	LOC_Os03g55420.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14578	_	prx52	_	class III peroxidase 52			4	BN000581.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0105800	LOC_Os04g01550.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14579	_	prx54	_	class III peroxidase 54, peroxidase 72			4	BN000583. peroxidase 72 in Wang et al. 2020.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0423800	LOC_Os04g34630.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
14580	PRX55	prx55, OsPRX55	CLASS III PEROXIDASE 55	class III peroxidase 55, Peroxidase 55	CLASS III PEROXIDASE 55		4	BN000584.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0465100	LOC_Os04g39100.1				GO:0004601 - peroxidase activity, GO:0009408 - response to heat, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress	TO:0000259 - heat tolerance	
14581	_	prx56	_	class III peroxidase 56			4	BN000585.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0628200	LOC_Os04g53630.1, LOC_Os04g53640.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14582	_	prx57	_	class III peroxidase 57			4	BN000586.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0651000	LOC_Os04g55740.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14583	PRX58	prx58, OsPRX58	PEROXIDASE 58	class III peroxidase 58	PEROXIDASE 58		4	BN000587.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0656800	LOC_Os04g56180.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14584	_	prx59, OsPRX59	_	class III peroxidase 59			4	BN000588.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0688100	LOC_Os04g59150.1, LOC_Os04g59150.2				GO:0009832 - plant-type cell wall biogenesis, GO:0050832 - defense response to fungus, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0052543 - callose deposition in cell wall, GO:0006979 - response to oxidative stress	TO:0000074 - blast disease	
14585	_	prx60, POX-1	_	class III peroxidase 60, peroxidase 1			4	BN000589. LOC_Os04g59160.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0688200	LOC_Os04g59160.1				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14586	_	prx61, OsPRX61	_	class III peroxidase 61, Peroxidase 2			4	BN000590. Peroxidase 2 in Sudo et al. 2008.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0688300	LOC_Os04g59190.1				GO:0006952 - defense response, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress	TO:0000112 - disease resistance, TO:0000021 - copper sensitivity	
14587	_	prx62, OsPRX62	_	class III peroxidase 62			4	BN000591.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0688500	LOC_Os04g59200.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0052543 - callose deposition in cell wall, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0004601 - peroxidase activity, GO:0009832 - plant-type cell wall biogenesis	TO:0000074 - blast disease	
14588	_	prx63, OsPRX63	_	class III peroxidase 63			4	BN000592.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0688600	LOC_Os04g59210.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14589	_	prx64	_	class III peroxidase 64			4	BN000593.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0689000 	LOC_Os04g59260.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006952 - defense response, GO:0006979 - response to oxidative stress	TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait	
14590	PRX65	prx65, OsPRX65	PEROXIDASE 65	class III peroxidase 65	PEROXIDASE 65		5	BN000594.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0134400	LOC_Os05g04380.1, LOC_Os05g04380.2				GO:0009409 - response to cold, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0050832 - defense response to fungus, GO:0020037 - heme binding	TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0002657 - oxidative stress	PO:0025034 - leaf 
14591	_	prx67	_	class III peroxidase 67			5	BN000596.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0134800	LOC_Os05g04440.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14592	_	prx68	_	class III peroxidase 68			5	BN000597. LOC_Os05g04450. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0135000	LOC_Os05g04450.1				GO:0046872 - metal ion binding, GO:0009610 - response to symbiotic fungus, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0044403 - symbiosis, encompassing mutualism through parasitism		PO:0025025 - root system 
14593	_	prx69	_	class III peroxidase 69			5	LOC_Os05g04470. BN000598.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0135200	LOC_Os05g04470.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14594	_	prx70	_	class III peroxidase 70			5	BN000599.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0135400	LOC_Os05g04490.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14595	_	prx71, Osprx71	_	class III peroxidase 71, Peroxidase 63			5	BN000600. Peroxidase 63 in Sudo et al. 2008. LOC_Os05g04500.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0135500	LOC_Os05g04500.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0006952 - defense response, GO:0046872 - metal ion binding, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance	
14596	PRX72	prx72, OsPrx72	PEROXIDASE 72	class III peroxidase 72, Os-peroxidase 1, peroxidase 1	PEROXIDASE 72		5	BN000601. Os-peroxidase 1 in Pan et al. 2017.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0162000	LOC_Os05g06970.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14597	_	prx73	_	class III peroxidase 73			5	BN000602.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0231900	LOC_Os05g14260.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14598	_	prx75	_	class III peroxidase 75			5	BN000604. Haem peroxidase family protein.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0499400	LOC_Os05g42000.1, LOC_Os05g42000.2				GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding		
14599	_	prx76	_	class III peroxidase 76			6	BN000605.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0237600	LOC_Os06g13050.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14600	PRX77	prx77, OsPRX77	CLASS III PEROXIDASE 77	class III peroxidase 77	CLASS III PEROXIDASE 77		6	BN000606.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0274800	LOC_Os06g16350.1				GO:0004601 - peroxidase activity, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0010238 - response to proline, GO:0042545 - cell wall modification	TO:0000303 - cold tolerance, TO:0000034 - chromium sensitivity	
14601	_	prx78, PRX78, OsPRX78	_	class III peroxidase 78			6	BN000607. catalase in Luan and Zhou 2015. an OsPR1b-interacting factor.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0306300	LOC_Os06g20150.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
14602	_	prx79	_	class III peroxidase 79			6	BN000608.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0472900	LOC_Os06g27850.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14603	_	prx80	_	class III peroxidase 80			6	BN000609.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0490400	LOC_Os06g29470.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14604	PRX81	prx81, OsPRX81	CLASS III PEROXIDASE 81	class III peroxidase 81	CLASS III PEROXIDASE 81		6	BN000610. GO:0072593 reactive oxygen species metabolic process	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0522300	LOC_Os06g33100.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity	
14605	PRX82	prx82, OsPRX82	PEROXIDASE 82	class III peroxidase 82	PEROXIDASE 82		6	BN000611. GO:0072593 reactive oxygen species metabolic process	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0521900	LOC_Os06g33080.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14606	_	prx83	_	class III peroxidase 83			6	BN000612.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0521500	LOC_Os06g32990.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0009809 - lignin biosynthetic process, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14607	_	prx84	_	class III peroxidase 84			6	BN000613.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0521400	LOC_Os06g32980.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14608	_	prx85	_	class III peroxidase 85			6	BN000614.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0521200	LOC_Os06g32960.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14609	_	prx86, PRX86, OsPRX86	_	class III peroxidase 86, peroxidase FLXPER4, PER4			6	BN000615. D40265, AU163222. peroxidase FLXPER4 (PER4) in Yamaguchi et al. 2004.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0547400	LOC_Os06g35520.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding	TO:0000432 - temperature response trait, TO:0000074 - blast disease	
14610	PRX87	prx87, OsPRX87, POD87, OsPOD87	PEROXIDASE 87	class III peroxidase 87	PEROXIDASE 87		6	BN000616.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0547100	LOC_Os06g35490.1				GO:0046872 - metal ion binding, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
14611	PRX88	prx88, OsPRX88	PEROXIDASE 88	class III peroxidase 88	PEROXIDASE 88		6	BN000617. GO:0072593 reactive oxygen species metabolic process	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0546500	LOC_Os06g35480.1				GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0009723 - response to ethylene stimulus, GO:0004601 - peroxidase activity, GO:0020037 - heme binding	TO:0000173 - ethylene sensitivity	
14612	PRX89	prx89, OsPRX89	PEROXIDASE 89	class III peroxidase 89	PEROXIDASE 89		6	BN000618.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0681600	LOC_Os06g46799.1				GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance	PO:0025034 - leaf 
14613	_	prx90	_	class III peroxidase 90			6	BN000619. EF990900, EF990901.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0695500	LOC_Os06g48030.1, LOC_Os06g48030.3				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14614	_	prx91	_	class III peroxidase 91			6	BN000620.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0695400	LOC_Os06g48020.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14615	_	prx92	_	class III peroxidase 92			6	BN000621.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0695300	LOC_Os06g48010.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14616	_	prx93	_	class III peroxidase 93			6	BN000622.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0695200	LOC_Os06g48000.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14617	_	prx94	_	class III peroxidase 94			7	BN000623. LOC_Os07g01400. Os07g0104400  (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os07g01400				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14618	_	prx95, OsPRX95	_	class III peroxidase 95, peroxidase 1			7	BN000624. peroxidase 1 in Wang et al. 2020.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0104500	LOC_Os07g01410.1				GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding	TO:0006001 - salt tolerance	
14619	_	prx96	_	class III peroxidase 96			7	BN000625. LOC_Os07g01420. Os07g0104600 (in Rap1 (build3), Rap2 (build4)).	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance		LOC_Os07g01420				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14620	_	prx97, Osprx97	_	class III peroxidase 97			7	BN000626.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0104100	LOC_Os07g01370.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14621	_	prx98, Osprx98, POD1, OsPOD1	_	class III peroxidase 98			7	BN000627. POD1 in Hu et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0115300	LOC_Os07g02440.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14622	_	prx99	_	class III peroxidase 99			7	BN000628. LOC_Os07g06175. Os07g0156000  (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0156200	LOC_Os07g06175.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14623	_	prx100, prx101	_	class III peroxidase 100, class III peroxidase 101			7	BN000629, BN000630.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance						GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14624	PRX102	prx102, OsPRX102	PEROXIDASE 102	class III peroxidase 102, PEROXIDASE102	PEROXIDASE 102	prx102, prx102-1, prx102-2, prx102-3, prx102-4, prx102-5, prx102-6	7	BN000631. GO:0080147: root hair cell development. GO:1902892: positive regulation of root hair elongation. GO:0035618: root hair.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0499500	LOC_Os07g31610.1				GO:0048767 - root hair elongation, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0005783 - endoplasmic reticulum	TO:0002665 - root hair length	PO:0000262 - trichoblast , PO:0007519 - 5 root hair formation stage 
14625	_	prx103	_	class III peroxidase 103			7	BN000632.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character						GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14626	_	prx104	_	class III peroxidase 104			7	BN000633.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0531400	LOC_Os07g34710.1, LOC_Os07g34710.2, LOC_Os07g34710.3				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity		
14627	_	prx105, OsPRX105	_	class III peroxidase 105			7	BN000634. LOC_Os07g44460.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0638600	LOC_Os07g44480.1, LOC_Os07g44460.1				GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding		
14628	_	prx106	_	class III peroxidase 106			7	BN000635. LOC_Os07g44480. Os07g0638800 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0638600	LOC_Os07g44460.1, LOC_Os07g44480.1				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14629	_	prx107	_	class III peroxidase 107			7	BN000636.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0639000	LOC_Os07g44550.1				GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress		
14630	_	prx108	_	class III peroxidase 108			7	BN000637.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0639400	LOC_Os07g44590.1				GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress		
14631	_	prx109, POX-2	_	class III peroxidase 109, peroxidase 2			7	BN000638. LOC_Os07g47990. peroxidase 2 in Sudo et al. 2008.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0676900	LOC_Os07g47990.1, LOC_Os07g47990.2				GO:0006979 - response to oxidative stress, GO:0046688 - response to copper ion, GO:0006952 - defense response, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity	TO:0000021 - copper sensitivity, TO:0000112 - disease resistance	
14632	PRX115	prx115, OsPRX115	PEROXIDASE 115	class III peroxidase 115	PEROXIDASE 115		7	BN000644.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0677600	LOC_Os07g48060.1, LOC_Os07g48060.2				GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14633	_	prx116	_	class III peroxidase 116			7	BN000645.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0694300	LOC_Os07g49360.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14634	PRX117	prx117, OsPRX117, OsPRX47, PRX47	PEROXIDASE 117	class III peroxidase 117, Putative peroxidase 47, Peroxidase 47	PEROXIDASE 117		8	BN000646. OsPRX47 ((Putative) peroxidase 47) in Wu et al. 2014 and Sudo et al. 2008, Jiang et al. 2023.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0113000	LOC_Os08g02110.1				GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0046688 - response to copper ion, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0031667 - response to nutrient levels	TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000401 - plant growth hormone sensitivity, TO:0000021 - copper sensitivity, TO:0000011 - nitrogen sensitivity	
14635	_	prx118	_	class III peroxidase 118			8	BN000647.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0302000	LOC_Os08g20730.1				GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14636	_	prx119	_	class III peroxidase 119			8	BN000648.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance						GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14637	_	prx120	_	class III peroxidase 120			9	BN000649.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0323900	LOC_Os09g15510.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
14638	_	prx121	_	class III peroxidase 121			9	BN000650.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0323700	LOC_Os09g15500.1				GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0020037 - heme binding		
14639	_	prx122	_	class III peroxidase 122			9	BN000651.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0471100	LOC_Os09g29490.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14640	_	prx123	_	class III peroxidase 123			9	BN000652.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0507500	LOC_Os09g32964.1				GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14641	_	prx124	_	class III peroxidase 124			10	BN000653.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character						GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress		
14642	_	prx125, PRX125, OsPRX125	_	class III peroxidase 125			10	BN000654.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0109300	LOC_Os10g02040.1, LOC_Os10g02040.2				GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity	TO:0000074 - blast disease	
14643	_	prx127	_	class III peroxidase 127			10	BN000656.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0536600	LOC_Os10g39160.1				GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14644	PRX128	prx128, OsPRX128, POD128, OsPOD128	CLASS III PEROXIDASE 128	class III peroxidase 128	CLASS III PEROXIDASE 128		10	BN000657.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0536700	LOC_Os10g39170.1				GO:0004601 - peroxidase activity, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding, GO:0046872 - metal ion binding	TO:0000074 - blast disease	
14645	_	prx129	_	class III peroxidase 129			10	BN000658.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0566800	LOC_Os10g41720.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14646	_	prx130, OsPRX2	_	class III peroxidase 130			11	BN000659. OsPRX2 in Ke et al. 2019.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0112400	LOC_Os11g02130.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14647	_	prx131	_	class III peroxidase 131			11	BN000660.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0112200	LOC_Os11g02100.1				GO:0050832 - defense response to fungus, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding	TO:0000074 - blast disease	
14648	PRX132	prx132, prx133, OsPRX132, OsPRX133	CLASS III PEROXIDASE 132	class III peroxidase 132, class III peroxidase 133	CLASS III PEROXIDASE 132		11	BN000661, BN000662. FJ266019-FJ266028 (indica and other wild rice species).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0210100	LOC_Os11g10460.1				GO:0009409 - response to cold, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0020037 - heme binding	TO:0000303 - cold tolerance	
14649	PRX134	prx134, OsPRX134, POD134, OsPOD134	PEROXIDASE 134	class III peroxidase 134	PEROXIDASE 134		11	BN000663.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0661600	LOC_Os11g43980.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0020037 - heme binding, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium, GO:0006979 - response to oxidative stress		
14650	_	prx136	_	class III peroxidase 136			12	BN000665.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity		
14651	_	prx137	_	class III peroxidase 137			12	BN000666.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0191500	LOC_Os12g08920.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14652	_	prx138	_	class III peroxidase 138			12	BN000667.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0530100	LOC_Os12g34524.1				GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0004601 - peroxidase activity, GO:0046872 - metal ion binding		
14653	SPDS2	OsSPDS2, OsSPMS1, SPMS1	SPERMIDINE SYNTHASE 2	spermidine synthase 2, spermine synthase 1, spermidine/spermine synthase 1	SPERMIDINE SYNTHASE 2	osspms1#1, osspms1#2	6	LOC_Os06g33710. a 42 kD spermidine synthase. AB098063. PO:0030123: panicle inflorescence. GO:2000280: regulation of root development.	 Seed - Morphological traits,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Dormancy,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os06g0528600	LOC_Os06g33710.1, LOC_Os06g33710.2, LOC_Os06g33710.3, LOC_Os06g33710.4				GO:0010187 - negative regulation of seed germination, GO:0009692 - ethylene metabolic process, GO:0005737 - cytoplasm, GO:0008152 - metabolic process, GO:0016049 - cell growth, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0006596 - polyamine biosynthetic process, GO:0004766 - spermidine synthase activity, GO:0016740 - transferase activity, GO:0009873 - ethylene mediated signaling pathway, GO:0009693 - ethylene biosynthetic process, GO:0009651 - response to salt stress, GO:0048831 - regulation of shoot development, GO:0048364 - root development	TO:0000430 - germination rate, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0006001 - salt tolerance, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000449 - grain yield per plant, TO:0000339 - stem thickness, TO:0000592 - 1000-dehulled grain weight, TO:0000734 - grain length	PO:0020141 - stem node , PO:0000025 - root tip , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath 
14654	SPDS1	OsSPDS1, OsSPDS, SPDS	SPERMIDINE SYNTHASE 1	spermidine synthase 1, Spermidine synthase	SPERMIDINE SYNTHASE 1		7	AJ251298. Q9SMB1. D15401.	 Biochemical character,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os07g0408700	LOC_Os07g22600.1, LOC_Os07g22600.2				GO:0009845 - seed germination, GO:0009651 - response to salt stress, GO:0009266 - response to temperature stimulus, GO:0004766 - spermidine synthase activity, GO:0006596 - polyamine biosynthetic process, GO:0009408 - response to heat, GO:0008295 - spermidine biosynthetic process	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000432 - temperature response trait	PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
14655	FUCTA	"OsFUT11, FUT11, FucTA, OsFucTA, OsFucT, FucT, \"alpha1, 3-FucT\""	CORE ALPHA-1,3-FUCOSYLTRANSFERASE	core alpha-1, 3-fucosyltransferase, alpha1, 3-Fucosyltransferase, Glycoprotein 3-alpha-L-fucosyltransferase A	CORE ALPHA-1,3-FUCOSYLTRANSFERASE	Osfuct, osfuct	8	AJ582955. GO:0036065: fucosylation. TO:0000860: flower length. GO:0090567: reproductive shoot system development. GO:0080186: developmental vegetative growth.	 Seed - Morphological traits,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0472600	LOC_Os08g36840.1				GO:0048653 - anther development, GO:0018392 - glycoprotein 3-alpha-L-fucosyltransferase activity, GO:0008417 - fucosyltransferase activity, GO:0006486 - protein amino acid glycosylation, GO:0009651 - response to salt stress, GO:0009908 - flower development, GO:0032580 - Golgi cisterna membrane, GO:0009555 - pollen development, GO:0016021 - integral to membrane	TO:0000622 - flower development trait, TO:0000429 - salt sensitivity, TO:0000448 - filled grain percentage, TO:0002610 - pistil length, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000040 - panicle length, TO:0000531 - anther length, TO:0000214 - anther shape, TO:0000391 - seed size, TO:0000145 - internode length, TO:0000576 - stem length	PO:0001007 - pollen development stage , PO:0007615 - flower development stage , PO:0001004 - anther development stage 
14656	GLCNACTI	GlcNAc-TI, OsGlcNAc-TI, GnTI, OsGnTI	N-ACETYLGLUCOSAMINYLTRANSFERASE I	N-acetylglucosaminyltransferase I	N-ACETYLGLUCOSAMINYLTRANSFERASE I	gnt1	2	AJ457976. TO:0000825: leaf flexibility. TO:0000993: cellulose content.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0832800	LOC_Os02g58590.1				GO:0000139 - Golgi membrane, GO:0009651 - response to salt stress, GO:0006491 - N-glycan processing, GO:0003827 - alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, GO:0006486 - protein amino acid glycosylation, GO:0009736 - cytokinin mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0030244 - cellulose biosynthetic process, GO:0042546 - cell wall biogenesis	TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance, TO:0000357 - growth and development trait	
14657	AHL1	OsAHL1, OsAHL14, AHL14	AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 1	AT-hook motif nuclear localized protein 1, AT-hook motif nuclear localized protein 14	AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 1		8	BR000366. OsAHL14 in Kim et al. 2011, Ambadas et al. 2023.	 Tolerance and resistance - Stress tolerance	Os08g0118000	LOC_Os08g02490.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
14658	_	OsAHL2, AHL2	_	AT-hook motif nuclear localized protein 2			8	BR000367.		Os09g0491708	LOC_Os09g31470.1				GO:0003677 - DNA binding		
14659	GGT	OsGGT, OsPGSIP-C1, PGSIP-C1	GLYCOGENIN GLUCOSYLTRANSFERASE	glycogenin glucosyltransferase, plant glycogenin-like starch initiation protein C1	GLYCOGENIN GLUCOSYLTRANSFERASE		10	AB164463. AC037426. TO:0000847: panicle inflorescence morphology trait.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os10g0555100	LOC_Os10g40640.1				GO:0016757 - transferase activity, transferring glycosyl groups	TO:0000207 - plant height, TO:0000657 - spikelet anatomy and morphology trait	
14660	_	OsPrk, Prk	_	Phosphoribulokinase, PRKase, OsPRKase			2	AF529237, AF543191. AP004778.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0698000 	LOC_Os02g47020.1				GO:0009535 - chloroplast thylakoid membrane, GO:0009409 - response to cold, GO:0006098 - pentose-phosphate shunt, GO:0005524 - ATP binding, GO:0000165 - MAPKKK cascade, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009902 - chloroplast relocation, GO:0009941 - chloroplast envelope, GO:0010103 - stomatal complex morphogenesis, GO:0006364 - rRNA processing, GO:0010114 - response to red light, GO:0010200 - response to chitin, GO:0010207 - photosystem II assembly, GO:0010218 - response to far red light, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0010319 - stromule, GO:0010363 - regulation of plant-type hypersensitive response, GO:0019344 - cysteine biosynthetic process, GO:0031348 - negative regulation of defense response, GO:0035304 - regulation of protein amino acid dephosphorylation, GO:0042742 - defense response to bacterium, GO:0043900 - regulation of multi-organism process, GO:0048046 - apoplast, GO:0050832 - defense response to fungus, GO:0009697 - salicylic acid biosynthetic process, GO:0009637 - response to blue light, GO:0006612 - protein targeting to membrane, GO:0008974 - phosphoribulokinase activity, GO:0009595 - detection of biotic stimulus, GO:0009570 - chloroplast stroma		
14661	EPSPS	EPSPs, OsEPSPS	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE	5-enolpyruvylshikimate-3-phosphate synthase, EPSP synthase	ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE	OsEPSPS-D213N	6	AB052962. AB016765. AB124881-AB124893 (EPSPs-rps20 genomic region in 13 strains of the Oryza AA genome species).	 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character,  Character as QTL - Plant growth activity,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance	Os06g0133900	LOC_Os06g04280.1				GO:0009635 - response to herbicide, GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009423 - chorismate biosynthetic process, GO:0048573 - photoperiodism, flowering	TO:0000019 - seedling height, TO:0005006 - glyphosate sensitivity, TO:0002616 - flowering time, TO:0000357 - growth and development trait, TO:0000455 - seed set percent, TO:0000485 - sterility related trait, TO:0000137 - days to heading	
14662	RPS20	rps20	RIBOSOMAL PROTEIN S20	ribosomal protein small subunit 20, r-protein S20, ribosomal protein S20	RIBOSOMAL PROTEIN S20		6	D12632. AB052962. P35686. AB124881-AB124893 (EPSPs-rps20 genomic region in 13 strains of the Oryza AA genome species).	 Other	Os06g0134000	LOC_Os06g04290.1				GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0015935 - small ribosomal subunit, GO:0006412 - translation		
14663	RPS40	rps40	RIBOSOMAL PROTEIN S40	ribosomal protein small subunit 40	RIBOSOMAL PROTEIN S40		6		 Other								
14664	CIN4	OsCIN4	CELL-WALL INVERTASE 4	cell-wall invertase 4	CELL-WALL INVERTASE 4		3	AY575551. LOC_Os03g52560. Os03g0735600 (in Ncbi and UniProt).	 Biochemical character	Os03g0735800	LOC_Os03g52560.1						
14665	CIN9	OsCIN9	CELL-WALL INVERTASE 9	cell-wall invertase 9	CELL-WALL INVERTASE 9		9	AP005738.	 Biochemical character								
14666	NIN1	OsNIN1	NEUTRAL/ALKALINE INVERTASE 1	neutral/alkaline invertase 1	NEUTRAL/ALKALINE INVERTASE 1		3	AY575558.	 Biochemical character	Os03g0314800	LOC_Os03g20020.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14667	NIN2	OsNIN2, CytINV, OsCytINV	NEUTRAL/ALKALINE INVERTASE 2	neutral/alkaline invertase 2, cytosolic neutral invertase	NEUTRAL/ALKALINE INVERTASE 2		1	AY575559.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0332100	LOC_Os01g22900.3, LOC_Os01g22900.2, LOC_Os01g22900.1				GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity, GO:0008152 - metabolic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
14668	NIN3	OsNIN3	NEUTRAL/ALKALINE INVERTASE 3	neutral/alkaline invertase 3	NEUTRAL/ALKALINE INVERTASE 3		2	AY575560.	 Biochemical character	Os02g0529400	LOC_Os02g32730.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14669	NIN4	OsNIN4	NEUTRAL/ALKALINE INVERTASE 4	neutral/alkaline invertase 4	NEUTRAL/ALKALINE INVERTASE 4		4	AY575561.	 Biochemical character	Os04g0409900	LOC_Os04g33490.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14670	NIN5	OsNIN5	NEUTRAL/ALKALINE INVERTASE 5	neutral/alkaline invertase 5	NEUTRAL/ALKALINE INVERTASE 5		2	AY575562.	 Biochemical character	Os02g0125600	LOC_Os02g03320.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14671	NIN6	OsNIN6, INV6, OsINV6	NEUTRAL/ALKALINE INVERTASE 6	neutral/alkaline invertase 6	NEUTRAL/ALKALINE INVERTASE 6		11	AY575563.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0175400	LOC_Os11g07440.1, LOC_Os11g07440.2, LOC_Os11g07440.3, LOC_Os11g07440.4				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
14672	NIN7	OsNIN7	NEUTRAL/ALKALINE INVERTASE 7	neutral/alkaline invertase 7	NEUTRAL/ALKALINE INVERTASE 7		4	AY575564.	 Biochemical character	Os04g0432400	LOC_Os04g35280.1				GO:0008152 - metabolic process, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity		
14673	NIN8	OsNIN8	NEUTRAL/ALKALINE INVERTASE 8	neutral/alkaline invertase 8, neutral invertase 8	NEUTRAL/ALKALINE INVERTASE 8	OsNIN8m, nin8	2	AY575565. GO:2000280: regulation of root development. TO:0000869: glume morphology trait. TO:1000022: anther morphology trait. TO:0006012: carpel morphology trait,	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0550600	LOC_Os02g34560.1, LOC_Os02g34560.2				GO:0005987 - sucrose catabolic process, GO:0051302 - regulation of cell division, GO:0008152 - metabolic process, GO:0048437 - floral organ development, GO:0009555 - pollen development, GO:0009409 - response to cold, GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity, GO:0048364 - root development	TO:0000531 - anther length, TO:0000050 - inflorescence branching, TO:0000040 - panicle length, TO:0006032 - panicle size, TO:0000218 - pollen abortion type, TO:0000455 - seed set percent, TO:0000019 - seedling height, TO:0002673 - amino acid content, TO:0000227 - root length, TO:0000333 - sugar content, TO:0000328 - sucrose content, TO:0000303 - cold tolerance, TO:0000656 - root development trait, TO:0006005 - fructose content, TO:0000300 - glucose content, TO:0006022 - floral organ development trait, TO:0000245 - pollen free, TO:0000234 - radicleless	PO:0007057 - 0 seed germination stage , PO:0001007 - pollen development stage , PO:0007520 - root development stage 
14674	DGAT1-1	OsDGAT, DGAT, OsDGAT1-1	DIACYLGLYCEROL ACYLTRANSFERASE 1-1	Diacylglycerol acyltransferase, diacylglycerol acyltransferase 1-1, type-1 diacylglycerol acyltransferase 1	DIACYLGLYCEROL ACYLTRANSFERASE 1-1		5	AY858584. Q5I396.	 Biochemical character	Os05g0196800	LOC_Os05g10810.1				GO:0019432 - triglyceride biosynthetic process, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane, GO:0004144 - diacylglycerol O-acyltransferase activity, GO:0009941 - chloroplast envelope, GO:0006071 - glycerol metabolic process, GO:0008374 - O-acyltransferase activity		
14675	_	FAAH	_	Fatty acid amide hydrolase, Os NAE AHase, N-acylethanolamine amidohydrolase			4	DQ118178.	 Biochemical character	Os04g0102700	LOC_Os04g01250.1, LOC_Os04g01250.2, LOC_Os04g01250.3				GO:0016787 - hydrolase activity, GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor		
14676	_	OsPI4K1, OsPI4K2	_	phosphatidylinositol 4-kinase 1, phosphatidylinositol 4-kinase 2, alpha-type phosphatidylinositol 4-kinase, beta-type phosphatidylinositol 4-kinase, alpha-type PI4K, beta-type PI4K			11	AF172282, AJ277791, AY536061. FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character	Os11g0209700	LOC_Os11g10420.1, LOC_Os11g10420.2				GO:0048015 - phosphoinositide-mediated signaling, GO:0004430 - 1-phosphatidylinositol 4-kinase activity, GO:0006661 - phosphatidylinositol biosynthetic process, GO:0016301 - kinase activity		
14677	_	OsLon1, LON1, OsLonP4, LONP4, LON2	_	Lon protease 1, Lon protease 4, LON PROTEASE 2			9	AY129070. B8BDV1, Q0J032. LOC_Os09g36300. Lon Protease Pamily (Peptidase_S16; PF05362). OsLonP4 in http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml LON2 in Dedecker et al. 2016. 	 Biochemical character	Os09g0533400	LOC_Os09g36300.1, LOC_Os09g36300.2, LOC_Os09g36300.3, LOC_Os09g36300.4				GO:0005782 - peroxisomal matrix, GO:0016558 - protein import into peroxisome matrix, GO:0006200 - ATP catabolic process, GO:0016485 - protein processing, GO:0005524 - ATP binding, GO:0004176 - ATP-dependent peptidase activity, GO:0004252 - serine-type endopeptidase activity, GO:0006515 - misfolded or incompletely synthesized protein catabolic process		
14678	RPL3A	OsRPL3A, ARP1, ARP3	RIBOSOMAL PROTEIN L3A	ribosomal protein L3A, r-protein L3, ribosomal protein L3	RIBOSOMAL PROTEIN L3A		12	BK001243, BK001029, D12630. D10403 (partial cds). P35684. D16034, D15934.		Os12g0167900	LOC_Os12g07010.1				GO:0005618 - cell wall, GO:0005774 - vacuolar membrane, GO:0003735 - structural constituent of ribosome, GO:0005886 - plasma membrane, GO:0022625 - cytosolic large ribosomal subunit, GO:0009506 - plasmodesma, GO:0005840 - ribosome, GO:0005730 - nucleolus, GO:0006412 - translation		
14679	RPL3B	OsRPL3B, RPL3, OsRPL3	RIBOSOMAL PROTEIN L3B	ribosomal protein L3B	RIBOSOMAL PROTEIN L3B		11	LOC_Os11g06750. BK001242, BK001244, AY236158. RPL3 in Moin et al. 2016.	 Other,  Tolerance and resistance - Disease resistance	Os11g0168200	LOC_Os11g06750.1				GO:0042742 - defense response to bacterium, GO:0006412 - translation, GO:0000027 - ribosomal large subunit assembly, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0005840 - ribosome	TO:0000175 - bacterial blight disease resistance	
14680	_	OSMYOXIB, OsMyoXIB	_	myosin XI B, Myosin class XI B		osmyoXIB	2	AY907549.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0816900	LOC_Os02g57190.1				GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0016459 - myosin complex, GO:0003774 - motor activity	TO:0000175 - bacterial blight disease resistance	
14681	SNAP32	OsSNAP32	SYNAPTOSOME-ASSOCIATED PROTEIN  OF 32 KD 	Synaptosomal-associated protein 32, Synaptosome-associated protein of 32 kD, 32 kD Synaptosome-associated protein	SYNAPTOSOME-ASSOCIATED PROTEIN  OF 32 KD 		2	a SNAP25-type t-SNARE protein. AY900120. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os02g0437200	LOC_Os02g24080.5, LOC_Os02g24080.4, LOC_Os02g24080.3, LOC_Os02g24080.2, LOC_Os02g24080.1				GO:0050832 - defense response to fungus	TO:0000040 - panicle length, TO:0000074 - blast disease, TO:0000269 - 100-seed weight, TO:0000180 - spikelet fertility, TO:0000207 - plant height	PO:0025034 - leaf 
14682	_	OsACP1, ACP1	_	acid phosphatase 1			1	DQ912176. a novel Pi starvation-induced gene.	 Tolerance and resistance - Stress tolerance	Os01g0720400	LOC_Os01g52230.1				GO:0016311 - dephosphorylation, GO:0042594 - response to starvation, GO:0016791 - phosphatase activity		
14683	ZFP182	OsZFP182, ZOS3-21, OsZOS3-21, ZOS3, OsZOS3	ZINC FINGER PROTEIN 182	zinc finger protein ZFP182, zinc finger protein 182	ZINC FINGER PROTEIN 182		3	AY286474. HQ858836. C2H2 transcription factor.	 Tolerance and resistance - Stress tolerance	Os03g0820300	LOC_Os03g60560.1				GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0009651 - response to salt stress, GO:0046872 - metal ion binding	TO:0000524 - submergence tolerance, TO:0000153 - relative yield, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
14684	CMS	OsCMS, OsIspD, IspD, OsMCT, MCT	_	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase, CDP-ME synthase, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase			1	AB296384. Q5N8G1. Os01g0887000  (in Rap2 (build4)).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0887100	LOC_Os01g66360.1	GR:0101299			GO:0009570 - chloroplast stroma, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity	
14685	DXR	OsDXR, OsIspC, IspC	DXP REDUCTOISOMERASE	1-deoxy-D-xylulose 5-phosphate reductoisomerase, DXP reductoisomerase, deoxyxylulose 5-phosphate reductoisomerase	DXP REDUCTOISOMERASE	osdxr	1	Q8W250.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Coloration - Others,  Biochemical character,  Coloration - Chlorophyll	Os01g0106900	LOC_Os01g01710.2, LOC_Os01g01710.1				GO:0009411 - response to UV, GO:0070402 - NADPH binding, GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity, GO:0009416 - response to light stimulus, GO:0016116 - carotenoid metabolic process, GO:0046872 - metal ion binding, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009570 - chloroplast stroma	TO:0000075 - light sensitivity, TO:0000496 - carotenoid content, TO:0000160 - UV light sensitivity, TO:0000495 - chlorophyll content	PO:0025034 - leaf 
14686	LAS1	HDR, OsHDR, OsIspH, IspH, OsHDR1, HDR1, OsLAS1, LAS1/OsHMBPP, OsHMBPP, HMBPP, OsIspH1, IspH1, YGL3, OsYGL3	LETHAL ALBINIC SEEDLING 1 	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, HMBDP reductase, HMBPP reductase 1, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1, HMBDP REDUCTASE, lethal albinic seedling 1, isoprenoid synthesis H1, yellow-green leaf3	HMBDP REDUCTASE	las1, las1-1, osisph1, ygl3	3	Q6AVG6. GO:1900865: chloroplast RNA modification. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll	Os03g0731900	LOC_Os03g52170.1				GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0015995 - chlorophyll biosynthetic process, GO:0042254 - ribosome biogenesis, GO:0007623 - circadian rhythm, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0009416 - response to light stimulus, GO:0008299 - isoprenoid biosynthetic process, GO:0009658 - chloroplast organization, GO:0050992 - dimethylallyl diphosphate biosynthetic process, GO:0009536 - plastid, GO:0009751 - response to salicylic acid stimulus, GO:0009570 - chloroplast stroma, GO:0009737 - response to abscisic acid stimulus, GO:0016114 - terpenoid biosynthetic process, GO:0046872 - metal ion binding, GO:0016117 - carotenoid biosynthetic process, GO:0042651 - thylakoid membrane, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway	TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000326 - leaf color, TO:0000166 - gibberellic acid sensitivity, TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf, TO:0000172 - jasmonic acid sensitivity, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0002715 - chloroplast development trait, TO:0000303 - cold tolerance, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0002664 - leaf yellowing tolerance, TO:0000167 - cytokinin sensitivity, TO:0000496 - carotenoid content	PO:0009005 - root , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009010 - seed , PO:0000003 - whole plant 
14687	HDS	OsHDS, OsIspG, IspG	HMBPP SYNTHASE	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, HMBDP synthase	HMBPP SYNTHASE		2	Q6K8J4.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0603800	LOC_Os02g39160.1				GO:0005506 - iron ion binding, GO:0009570 - chloroplast stroma, GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0016114 - terpenoid biosynthetic process, GO:0009416 - response to light stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	TO:0000075 - light sensitivity	
14688	MCS	OsMCS, IspF, OsIspF, OsMDS, MDS	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE	2-C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase, MECDP synthase	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE	ispF-1	2	Q6EPN6. the fifth enzyme in the MEP (2-C-methyl-d-erythritol 4-phosphate) pathway for isoprenoid biosynthesis.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Coloration - Others,  Vegetative organ - Leaf	Os02g0680600	LOC_Os02g45660.1				GO:0009416 - response to light stimulus, GO:0009658 - chloroplast organization, GO:0009411 - response to UV, GO:0046872 - metal ion binding, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016114 - terpenoid biosynthetic process, GO:0009570 - chloroplast stroma, GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	TO:0000075 - light sensitivity, TO:0000496 - carotenoid content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000160 - UV light sensitivity, TO:0000495 - chlorophyll content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	
14689	DXS3	OsDXS, OsDXS3, dxs3, DXS2, OsDXS2	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3	1-Deoxy-D-xylulose 5-phosphate synthase 3, DXP synthase 3	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3		7	Q6YU51. GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process. catalyzing the first step of the MEP (methylerythritol phosphate) pathway. DXS2 in Choi et al. 2020.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Coloration - Others	Os07g0190000	LOC_Os07g09190.1				GO:0009411 - response to UV, GO:0016114 - terpenoid biosynthetic process, GO:0046872 - metal ion binding, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009416 - response to light stimulus, GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity, GO:0009228 - thiamin biosynthetic process, GO:0009507 - chloroplast, GO:0009609 - response to symbiotic bacterium, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0002238 - response to molecule of fungal origin, GO:0008299 - isoprenoid biosynthetic process, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0000160 - UV light sensitivity, TO:0000075 - light sensitivity, TO:0000289 - carotene content	PO:0009005 - root 
14690	GRY340	OsCMK, CMK, OsIspE, IspE, OsGRY340, AL4, OsAL4	GREEN-REVERTIBLE YELLOW LEAF 340	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, CDP-ME kinase, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, green-revertible yellow leaf 340, albino leaf 4	4-(CYTIDINE 5'-DIPHOSPHO)-2-C-METHYL-D-ERYTHRITOL KINASE	gry340, al4	1	Q8S2G0. GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os01g0802100	LOC_Os01g58790.2, LOC_Os01g58790.1				GO:0009507 - chloroplast, GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, GO:0009411 - response to UV, GO:0009416 - response to light stimulus, GO:0009658 - chloroplast organization, GO:0007005 - mitochondrion organization, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016114 - terpenoid biosynthetic process, GO:0008299 - isoprenoid biosynthetic process, GO:0010109 - regulation of photosynthesis	TO:0000592 - 1000-dehulled grain weight, TO:0002715 - chloroplast development trait, TO:0000207 - plant height, TO:0000456 - spikelet number, TO:0000293 - chlorophyll-a content, TO:0000152 - panicle number, TO:0000180 - spikelet fertility, TO:0000455 - seed set percent, TO:0000137 - days to heading, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000495 - chlorophyll content, TO:0000160 - UV light sensitivity, TO:0000040 - panicle length, TO:0000326 - leaf color, TO:0000075 - light sensitivity	PO:0009047 - stem , PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0000003 - whole plant 
14691	MST4	OsMST4, OsSTP4, STP4	MONOSACCHARIDE TRANSPORTER 4	monosaccharide transporter 4, Sugar Transport Protein 4, STP protein 4, monosaccharide transporter STP4	MONOSACCHARIDE TRANSPORTER 4		3	AY342321. Q10PW9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0218400	LOC_Os03g11900.1				GO:0005358 - high-affinity hydrogen:glucose symporter activity, GO:0009651 - response to salt stress, GO:0009744 - response to sucrose stimulus, GO:0009749 - response to glucose stimulus, GO:0009750 - response to fructose stimulus, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0022891 - substrate-specific transmembrane transporter activity, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress	TO:0000238 - growth media composition sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	
14692	MST5	OsMST5, OsSTP5, STP5	MONOSACCHARIDE TRANSPORTER 5	monosaccharide transporter 5, Sugar Transport Protein 5, STP protein 5, monosaccharide transporter STP5	MONOSACCHARIDE TRANSPORTER 5		8	Q6ZKF0.	 Biochemical character	Os08g0178200 	LOC_Os08g08070.1				GO:0022891 - substrate-specific transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016021 - integral to membrane		
14693	MST6	OsMST6, STP6, OsSTP6	MONOSACCHARIDE TRANSPORTER 6	monosaccharide transporter 6, Sugar Transport Protein 6, STP protein 6, monosaccharide transporter STP6	MONOSACCHARIDE TRANSPORTER 6		7	AY342322. Q6Z401. GO:0140013: meiotic nuclear division.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0559700	LOC_Os07g37320.1				GO:0016021 - integral to membrane, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0015293 - symporter activity, GO:0051321 - meiotic cell cycle, GO:0005886 - plasma membrane, GO:0022891 - substrate-specific transmembrane transporter activity		
14694	_	LGH1	_	lazy growth habit1			7	The lazy growth habit of common wild rice is dominantand is controlled by a single gene, LGH1. The LGH1 locus was mapped on the short arm of chromosome 7.									
14695	_	Rf	_	restorer-of-fertility, fertility restorer			10	The Rf gene was located on chromosome 10 of common wild rice (Oryza rufipogon Griff.). The marker RF28 is closely linked to the Rf gene.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration								
14696	_	SP	_	spread panicle			4	PO:0009049; inflorescence. One locus (SP) controllingthe panicle shape of common wild rice (Oryza rufipogon Griff.) was mapped on the long arm of chromosome 4, and with the marker SPM closely linked to SP.	 Reproductive organ - Inflorescence						GO:0007275 - multicellular organismal development	TO:0000089 - panicle type	PO:0009049 - inflorescence 
14697	_	OsXRCC1	_	X-ray repair cross complementing protein 1			6	AB292807.		Os06g0144000	LOC_Os06g05190.1						
14698	_	OsPol lambda	_	DNA polymerase lambda			6	AB099525.	 Biochemical character	Os06g0237200	LOC_Os06g13020.1, LOC_Os06g13020.2				GO:0006281 - DNA repair, GO:0003677 - DNA binding, GO:0003887 - DNA-directed DNA polymerase activity		
14699	_	OsBphi237	_	BPH-inducible gene 237, Brown planthopper-inducible gene 237				EU513006.	 Tolerance and resistance - Insect resistance								
14700	_	OsBphi262	_	BPH-inducible gene 262, Brown planthopper-inducible gene 262			5	EU513010.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os05g0402900	LOC_Os05g33400.1				GO:0006508 - proteolysis, GO:0004190 - aspartic-type endopeptidase activity		
14702	_	OsMIK, LPA	_	myo-inositol kinase, low phytic acid		lpa N15-186, lpa	3	EU366952. an orthologue of maize lpa3. a low phytic acid (lpa) rice mutant. LOC_Os03g52760.	 Seed - Physiological traits - Storage substances	Os03g0737701	LOC_Os03g52760.1				GO:0009737 - response to abscisic acid stimulus, GO:0006793 - phosphorus metabolic process, GO:0016301 - kinase activity, GO:0016773 - phosphotransferase activity, alcohol group as acceptor	TO:0002666 - seed phosphorus content, TO:0000615 - abscisic acid sensitivity	
14703	TLP8	OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415, OsFBT7, FBT7	TUBBY-LIKE PROTEIN 8	tubby-like protein 1, tubby-like protein 8, F-box protein 259, F-box-type E3 ubiquitin ligase T7	TUBBY-LIKE PROTEIN 8		5	Q75HX5. OsTLP1 in Kou et al. 2009, Zeng et al. 2022. Os_F0415 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0437900	LOC_Os05g36190.1				GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait	PO:0009010 - seed , PO:0009049 - inflorescence 
14704	TLP12	OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479, OsFBT12, FBT12	TUBBY-LIKE PROTEIN 12	tubby-like protein 2, tubby-like protein 12, F-box protein 402, F-box-type E3 ubiquitin ligase T12	TUBBY-LIKE PROTEIN 12		8	Q69U54. OsTLP2 in Kou et al. 2009, Zeng et al. 2022. 	 Tolerance and resistance - Disease resistance	Os08g0103300	LOC_Os08g01290.7, LOC_Os08g01290.6, LOC_Os08g01290.1, LOC_Os08g01290.2, LOC_Os08g01290.3, LOC_Os08g01290.4, LOC_Os08g01290.5						
14705	TLP7	OsTLP3, TLP3, OsTLP7, OsFbox240, Os_F0401, OsFBT6, FBT6	TUBBY-LIKE PROTEIN 7	tubby-like protein 3, tubby-like protein 7, F-box protein 240, F-box-type E3 ubiquitin ligase T6	TUBBY-LIKE PROTEIN 7		4	Q7XSV4. OsTLP3 in Kou et al. 2009, Zeng et al. 2022. Os_F0401 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0687900	LOC_Os04g59130.1				GO:0009651 - response to salt stress, GO:0009628 - response to abiotic stimulus, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait	
14706	TLP14	OsTLP4, TLP4, OsTLP14, OsFbox645, Os_F0315, OsFBT14, FBT14	TUBBY-LIKE PROTEIN 14	tubby-like protein 4, tubby-like protein 14, F-box protein 645, F-box-type E3 ubiquitin ligase T14	TUBBY-LIKE PROTEIN 14		12	Q2QXB2. OsTLP4 in Kou et al. 2009, Zeng et al. 2022.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0163400	LOC_Os12g06630.1, LOC_Os12g06630.2, LOC_Os12g06630.3				GO:0009414 - response to water deprivation, GO:0009628 - response to abiotic stimulus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait	PO:0009049 - inflorescence , PO:0009010 - seed 
14707	TLP3	OsTLP5, TLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396, OsFBT3, FBT3	TUBBY-LIKE PROTEIN 3	tubby-like protein 5, tubby-like protein 3, F-box protein 50, F-box-type E3 ubiquitin ligase T3	TUBBY-LIKE PROTEIN 3		1	Q8LJA9. OsTLP5 in Kou et al. 2009, Zeng et al. 2022. Os_F0396 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os01g0866800	LOC_Os01g64700.1, LOC_Os01g64700.2						
14708	TLP13	OsTLP6, TLP6, OsTLP13, OsFbox569, Os_F0461, OsFBT13, FBT13	TUBBY-LIKE PROTEIN 13	tubby-like protein 6, tubby-like protein 13, F-box protein 569, F-box-type E3 ubiquitin ligase T13	TUBBY-LIKE PROTEIN 13		11	Q53PP5. OsTLP6 in Kou et al. 2009. the candidate gene for qTGW11 (QTL for thousand-grain weight).	 Tolerance and resistance - Disease resistance	Os11g0163600	LOC_Os11g06420.1, LOC_Os11g06420.2						
14709	TLP11	OsTLP7, TLP7, OsTLP11, OsFbox398, Os_F0421, OsFBT11, FBT11	TUBBY-LIKE PROTEIN 11	tubby-like protein 7, tubby-like protein 11, F-box protein 398, F-box-type E3 ubiquitin ligase T11	TUBBY-LIKE PROTEIN 11		7	Q8H485. OsTLP7 in Kou et al. 2009, Zeng et al. 2022. 	 Tolerance and resistance - Disease resistance	Os07g0667000	LOC_Os07g47110.1						
14710	TLP5	OsTLP8, LP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446, OsFBT4, FBT4	TUBBY-LIKE PROTEIN 5	tubby-like protein 8, tubby-like protein 5, F-box protein 107, F-box-type E3 ubiquitin ligase T4	TUBBY-LIKE PROTEIN 5		2	Q6Z2G9. OsTLP8 in Kou et al. 2009, Zeng et al. 2022. Os_F0446 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance	Os02g0705300	LOC_Os02g47640.1						
14711	TLP1	OsTLP9, TLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675, OsFBT1, FBT1	TUBBY-LIKE PROTEIN 1	tubby-like protein 9, tubby-like protein 1, F-box protein 34, F-box-type E3 ubiquitin ligase T1	TUBBY-LIKE PROTEIN 1		1	Q5QM27. OsTLP9 in Kou et al. 2009, Zeng et al. 2022. Os_F0675 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance	Os01g0674500	LOC_Os01g48370.1						
14712	TLP9	OsTLP10, TLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560, OsFBT9, FBT9	TUBBY-LIKE PROTEIN 9	tubby-like protein 10, tubby-like protein 9, F-box protein 267, F-box-type E3 ubiquitin ligase T9	TUBBY-LIKE PROTEIN 9		5	Q68Y48. OsTLP10 in Kou et al. 2009, Zeng et al. 2022. Os_F0560 in Hua et al. 2011.	 Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0514300	LOC_Os05g43850.1				GO:0009845 - seed germination, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
14713	TLP10	OsTLP11, TLP11, OsTLP10, OsFbox278, Os_F0631, OsFBT10, FBT10	TUBBY-LIKE PROTEIN 10	tubby-like protein 11, tubby-like protein 10, F-box protein 278, F-box-type E3 ubiquitin ligase T10	TUBBY-LIKE PROTEIN 10		5	Q688Y7. EU328286. OsTLP11 in Kou et al. 2009, Zeng et al. 2022.	 Tolerance and resistance - Disease resistance	Os05g0560400	LOC_Os05g48670.1						
14714	TLP2	OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683, OsFBT2, FBT2	TUBBY-LIKE PROTEIN 2	tubby-like protein 12, tubby-like protein 2, F-box protein 39, F-box-type E3 ubiquitin ligase T2	TUBBY-LIKE PROTEIN 2		1	Q94DT9. OsTLP12 in Kou et al. 2009, Zeng et al. 2022. Os_F0683 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0759100	LOC_Os01g55430.1, LOC_Os01g55430.2				GO:0009414 - response to water deprivation, GO:0009628 - response to abiotic stimulus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance	PO:0007057 - 0 seed germination stage 
14715	TLP6	OsTLP14, TLP14, OsTLP6, OsFbox139, Os_F0681, OsFBT5, FBT5	TUBBY-LIKE PROTEIN 6	tubby-like protein 14, tubby-like protein 6, F-box protein 139, F-box-type E3 ubiquitin ligase T5	TUBBY-LIKE PROTEIN 6		3	Q10LG8. OsTLP14 in Kou et al. 2009, Zeng et al. 2022. Os_F0681 in Hua et al. 2011.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0351400	LOC_Os03g22800.1, LOC_Os03g22800.2, LOC_Os03g22800.3				GO:0009628 - response to abiotic stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
14716	PRPL3	OsPRPL3	Plastid Ribosomal Protein L3 	50S ribosomal protein	Plastid Ribosomal Protein L3 	prpl3	2	EF444532.	 Tolerance and resistance - Disease resistance,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os02g0137200	LOC_Os02g04460.1				GO:0010109 - regulation of photosynthesis, GO:0006412 - translation, GO:0005840 - ribosome, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0003735 - structural constituent of ribosome	TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait	PO:0025034 - leaf , PO:0009038 - palea , PO:0009037 - lemma , PO:0009047 - stem 
14717	TOND1	OsTOND1, OsPR5a, PR5a	TOLERANCE OF NITROGEN DEFICIENCY 1	Thaumatin, Tolerance Of Nitrogen Deficiency 1, pathogenesis-related gene 5q			12	EF444529. OsPR5a in Yang  et al. 2023. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0630100	LOC_Os12g43440.1				GO:0003735 - structural constituent of ribosome, GO:0005886 - plasma membrane, GO:0002237 - response to molecule of bacterial origin, GO:0006412 - translation, GO:0005840 - ribosome, GO:0009609 - response to symbiotic bacterium, GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity	PO:0025281 - pollen , PO:0009066 - anther , PO:0025034 - leaf , PO:0005020 - vascular bundle , PO:0020104 - leaf sheath , PO:0009051 - spikelet , PO:0006000 - caryopsis hull 
14718	_	nDaiZ1	_	transposable element nDaiZ1			1		 Other						GO:0032196 - transposition		
14719	_	nDaiZ2	_	transposable element nDaiZ2			1		 Other						GO:0032196 - transposition		
14720	_	nDaiZ3	_	transposable element nDaiZ3			2		 Other						GO:0032196 - transposition		
14721	_	nDaiZ4	_	transposable element nDaiZ4			3		 Other						GO:0032196 - transposition		
14722	_	nDaiZ5	_	transposable element nDaiZ5			3		 Other						GO:0032196 - transposition		
14723	_	nDaiZ6	_	transposable element nDaiZ6			5		 Other						GO:0032196 - transposition		
14724	_	nDaiZ7	_	transposable element nDaiZ7			5		 Other						GO:0032196 - transposition		
14725	_	nDaiZ8	_	transposable element nDaiZ8			5		 Other						GO:0032196 - transposition		
14726	_	nDaiZ9	_	transposable element nDaiZ9			5		 Other						GO:0032196 - transposition		
14727	_	nDaiZ10	_	transposable element nDaiZ10			6		 Other						GO:0032196 - transposition		
14728	_	nDaiZ11	_	transposable element nDaiZ11			6		 Other						GO:0032196 - transposition		
14729	_	nDaiZ12	_	transposable element nDaiZ12			7		 Other						GO:0032196 - transposition		
14730	_	nDaiZ13	_	transposable element nDaiZ13			7		 Other						GO:0032196 - transposition		
14731	_	nDaiZ14	_	transposable element nDaiZ14			7		 Other						GO:0032196 - transposition		
14732	_	nDaiZ15	_	transposable element nDaiZ15			11		 Other						GO:0032196 - transposition		
14733	_	nDaiZ16	_	transposable element nDaiZ16			11		 Other						GO:0032196 - transposition		
14734	_	DaiZ1	_	transposable element DaiZ1			1		 Other						GO:0032196 - transposition		
14735	_	DaiZ4	_	transposable element DaiZ4			4		 Other						GO:0032196 - transposition		
14736	_	DaiZ6	_	transposable element DaiZ6			6		 Other						GO:0032196 - transposition		
14737	_	DaiZ7	_	transposable element DaiZ7			7	FJ167392.	 Other						GO:0032196 - transposition		
14738	_	DaiZ10	_	transposable element DaiZ10			10		 Other						GO:0032196 - transposition		
14739	_	SerR	_	serine racemase			4	AB425957. Q7XSN8.	 Biochemical character	Os04g0555900	LOC_Os04g46930.1, LOC_Os04g46930.2				GO:0008721 - D-serine ammonia-lyase activity, GO:0043621 - protein self-association, GO:0016853 - isomerase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0003941 - L-serine ammonia-lyase activity, GO:0070178 - D-serine metabolic process, GO:0006563 - L-serine metabolic process		
14740	_	OsHAL3, HAL3	_	halotolerance protein HAL3			6	a flavin mononucleotide (FMN)-binding protein. a putative 4'-phosphopantothenoylcysteine decarboxylase. FJ809894. LOC_Os06g09910. Q69K55.	 Other,  Reproductive organ - Heading date,  Biochemical character	Os06g0199500	LOC_Os06g09910.1, LOC_Os06g09910.2				GO:0016563 - transcription activator activity, GO:0003824 - catalytic activity, GO:0001558 - regulation of cell growth, GO:0070207 - protein homotrimerization, GO:0015937 - coenzyme A biosynthetic process, GO:0004633 - phosphopantothenoylcysteine decarboxylase activity, GO:0010181 - FMN binding, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0009637 - response to blue light, GO:0005634 - nucleus, GO:0008152 - metabolic process	TO:0006001 - salt tolerance, TO:0002616 - flowering time, TO:0000159 - blue light sensitivity	PO:0009013 - portion of meristem tissue 
14741	HIP1	OsHIP1, HAF1, OsHAF1, OsRING275, RING275	HAL3-INTERACTING PROTEIN 1	OsHAL3-interacting protein 1, Heading date Associated Factor 1, RING-type E3 ubiquitin ligase 275	HAL3-INTERACTING PROTEIN 1	haf1	4	a protein with a RING-finger motif with similarity to E3 ligase. Q7XTV7. RING Finger Protein (OsRFP).	 Reproductive organ - Heading date	Os04g0648800	LOC_Os04g55510.1				GO:0040008 - regulation of growth, GO:0008270 - zinc ion binding, GO:0032922 - circadian regulation of gene expression, GO:0046872 - metal ion binding, GO:0016740 - transferase activity, GO:0005634 - nucleus, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0016567 - protein ubiquitination, GO:0048573 - photoperiodism, flowering	TO:0000229 - photoperiod sensitivity, TO:0000137 - days to heading, TO:0002616 - flowering time	PO:0025034 - leaf 
14742	_	OsEGL2	_	endo-(1,3;1,4)-beta-glucanase 2			1	BAB85436. AU162234.	 Biochemical character	Os01g0942300	LOC_Os01g71474.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
14743	_	OsCDAP1, GID1L2	_	Cell death associated protein 1			7	C25992. GID1L2 in Li et al. 2016. LOC_Os07g06830. GA receptor.	 Biochemical character	Os07g0162400	LOC_Os07g06830.1				GO:0008152 - metabolic process, GO:0016787 - hydrolase activity		
14744	_	OsCDAP2	_	Cell death associated protein 2			7		 Biochemical character	Os07g0162700	LOC_Os07g06860.1				GO:0016787 - hydrolase activity		
14745	_	OsCDAP3	_	Cell death associated protein 3			7	AU029527, C74392.	 Biochemical character	Os07g0162900	LOC_Os07g06880.1				GO:0016787 - hydrolase activity		
14746	KAI2	D14L, OsD14L, OsKAI2	KARRIKIN INSENSITIVE 2	Os hydrolase, hebibaD14L, Dwarf14-Like, KAI2 receptor, KAI2 hydrolase receptor	DWARF14-LIKE	d14l, d14l-1, d14l-2, d14l-3, d14l-c1, kai2	3	ABF96818. Q10J20. PDB: 8VCZ, 8VD1. an alpha/beta-fold hydrolase. homologous to Arabidopsis thaliana KARRIKIN INSENSITIVE2/HYPOSENSITIVE TO LIGHT (KAI2/HTL). The hebiba mutant is due to a genomic deletion of 169 kb, which contains 26 annotated genes (Gutjahr et al. 2015). GO:0080167: response to karrikin. GO:0036377: arbuscular mycorrhizal association. PRJNA593368 in the Gene Expression Omnibus database. GO:1901601: strigolactone biosynthetic process. GO:1902347: response to strigolactone.	 Vegetative organ - Culm,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0437600	LOC_Os03g32270.1				GO:0009603 - detection of symbiotic fungus, GO:0016787 - hydrolase activity, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus, GO:0009646 - response to absence of light	TO:0000476 - growth hormone content, TO:0000401 - plant growth hormone sensitivity, TO:0000460 - light intensity sensitivity, TO:0000544 - mesocotyl length, TO:0000620 - embryo development trait, TO:0006036 - stem elongation	
14747	LP2	OsLP2	LEAF PANICLE 2 	Leaf Panicle 2, LEAF PANICLE2			2	FJ831442. a leucine-rich repeat receptor kinase.	 Tolerance and resistance - Stress tolerance	Os02g0615800	LOC_Os02g40240.2, LOC_Os02g40240.1				GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity, GO:0009414 - response to water deprivation, GO:0010119 - regulation of stomatal movement, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
14748	_	OsABA45, ABA45, OsGDP, GDP, OsASR, ASR	_	Gram Domain Protein, ABA-responsive gene45, ABA-responsive gene 45			12	an ABA- or wound-inducible protein. GO:0080181: lateral root branching.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os12g0478200	LOC_Os12g29400.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000326 - leaf color, TO:0000172 - jasmonic acid sensitivity, TO:0000043 - root anatomy and morphology trait, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
14749	RNS7	OsRNS7	RIBONUCLEASE 7	RNase 7	RIBONUCLEASE 7		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0629300	LOC_Os07g43600.1				GO:0033897 - ribonuclease T2 activity, GO:0042594 - response to starvation, GO:0003723 - RNA binding, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	PO:0009006 - shoot system 
14750	RNS8	OsRNS8	RIBONUCLEASE 8	RNase 8	RIBONUCLEASE 8		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0629900	LOC_Os07g43640.1				GO:0033897 - ribonuclease T2 activity, GO:0003723 - RNA binding, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	PO:0009005 - root 
14752	18S  rRNA		18S RIBOSOMAL RNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA, 18S rDNA			9	FJ411058 (O. brachyantha), GU111553 (O. australiensis).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14753	26S  rRNA		26S RIBOSOMAL RNA	26S RIBOSOMAL RNA, 26S ribosomal RNA, 26S rRNA, 26S rDNA			9	FJ411058 (O. brachyantha), GU111553 (O. australiensis).	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
14754	EAS1 	OsPAO, PAO, OsACD1, ACD1, OsEAS1, RCD2, OsRCD2	EARLY SENESCENCE 1 	Pheophorbide a oxygenase, accelerated cell-death 1, early senescence 1, rapid cell death 2	PHEOPHORBIDE A OXYGENASE	eas1, rcd2	3	OsMH_03G0040800 (Rice Information GateWay (RIGW))  in Zhang et al. 2021.	 Biochemical character,  Vegetative organ - Culm,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os03g0146400	LOC_Os03g05310.1				GO:0010277 - chlorophyllide a oxygenase activity, GO:0010150 - leaf senescence, GO:0009507 - chloroplast, GO:0008219 - cell death, GO:0045730 - respiratory burst, GO:0015996 - chlorophyll catabolic process, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0009416 - response to light stimulus, GO:0009611 - response to wounding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding	TO:0000075 - light sensitivity, TO:0000325 - soluble protein content, TO:0000207 - plant height, TO:0000316 - photosynthetic ability, TO:0000249 - leaf senescence, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0001018 - transpiration rate, TO:0000522 - stomatal conductance, TO:0001027 - net photosynthetic rate, TO:0000592 - 1000-dehulled grain weight, TO:0000455 - seed set percent, TO:0000447 - filled grain number, TO:0000346 - tiller number, TO:0000040 - panicle length, TO:0000145 - internode length	PO:0001054 - 4 leaf senescence stage 
14755	RCCR1	OsRCCR1, OsRCCR, RCCR	RED CHLOROPHYLL CATABOLITE REDUCTASE 1	red chlorophyll catabolite reductase 1	RED CHLOROPHYLL CATABOLITE REDUCTASE 1		10	JN604886.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0389200	LOC_Os10g25030.1				GO:0010150 - leaf senescence, GO:0051607 - defense response to virus, GO:0009413 - response to flooding, GO:0015996 - chlorophyll catabolic process	TO:0000524 - submergence tolerance, TO:0000148 - viral disease resistance, TO:0000249 - leaf senescence, TO:0000020 - black streak dwarf virus resistance	PO:0001054 - 4 leaf senescence stage 
14756	RCCR2	OsRCCR2, OsRCCR1, RCCR1	RED CHLOROPHYLL CATABOLITE REDUCTASE 2	red chlorophyll catabolite reductase 2	RED CHLOROPHYLL CATABOLITE REDUCTASE 2		10	JN604887. BGIOSGA032011. OsRCCR1 in Mao et al. 2017.	 Biochemical character,  Vegetative organ - Leaf	Os10g0389300	LOC_Os10g25040.1, LOC_Os10g25040.2				GO:0010150 - leaf senescence	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
14757	RCCR3	OsRCCR3	RED CHLOROPHYLL CATABOLITE REDUCTASE 3	red chlorophyll catabolite reductase 3	RED CHLOROPHYLL CATABOLITE REDUCTASE 3		10		 Biochemical character	Os10g0389100	LOC_Os10g25020.1						
14758	_	Ubi1	_	Ubiquitin1, polyubiquitin			6	AF184279. C98695. D22531 (replaced by C97944).	 Tolerance and resistance - Stress tolerance	Os06g0681400 	LOC_Os06g46770.1, LOC_Os06g46770.2, LOC_Os06g46770.3, LOC_Os06g46770.4, LOC_Os06g46770.5, LOC_Os06g46770.6					TO:0000432 - temperature response trait	
14759	_	trnC, trnC(GCA), trnC-GCA	_	tRNA-Cys, Cys-tRNA(GCA)			Pt	X15901 (Japonica Group chloroplast genome). FJ908467-FJ908481 (wild rice species, trnC-rpoB intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14760	_	ycf6	_				Pt										
14762	RPS2	rps2, rps2a, rps2b	RIBOSOMAL PROTEIN S2	ribosomal protein S2	RIBOSOMAL PROTEIN S2		Mt	AP011077 (Indica Group mitochondrial DNA, complete genome).	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005840 - ribosome, GO:0005739 - mitochondrion		
14764	TOS1-1	Tos1-1	_	transposon of O. sativa 1-1, retrotransposon Tos1-1				X66521.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
14765	TOS1-2	Tos1-2	_	transposon of O. sativa 1-2, retrotransposon Tos1-2				X66522.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
14766	TOS2	Tos2, Tos2-1	_	transposon of O. sativa 2, retrotransposon Tos2					 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
14767	TOS3	Tos3, Tos3-1	_	transposon of O. sativa 3, retrotransposon Tos3					 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
14768	_		_	reverse transcriptase				D12825 (clone=TOSRT-1).	 Other						GO:0003964 - RNA-directed DNA polymerase activity, GO:0006278 - RNA-dependent DNA replication		
14769	_		_	reverse transcriptase				D12826 (clone=TOSRT-4).	 Other								
14770	_	rbcL	_		_		Mt	D13101 (contains a part of rbcL gene). a transferred chloroplast DNA sequence.									
14771	_	atpB	_	ATP synthase beta subunit			Mt	a transferred chloroplast DNA sequence.	 Biochemical character								
14772	_	atpE	_	ATP synthase epsilon subunit			Mt		 Biochemical character								
14773	_	trnM, trnM(CAU), trnM-CAU	_	tRNA-Met, Met-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14774	_	trnV, trnV(UAC), trnV-UAC	_	tRNA-Val, Val-tRNA(UAC)			Pt	X15901 (Japonica Group chloroplast genome). FJ908303-FJ908655 (wild rice species).  AB436227-AB436285 (wild rice species, ndhC-tRNA Val intergenic region). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14775	_	trnM	_	tRNA-Met			Mt										
14777	RPL2	rpl2	RIBOSOMAL PROTEIN L2	ribosomal protein L2	RIBOSOMAL PROTEIN L2		Mt	D13101 (a transferred chloroplast DNA sequence contais a part of rpl2 gene). X12845 (contais rpl2 initiation codon). 	 Other								
14778	RPS12	rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Pt	X15901: CAA33929 (Japonica Group chloroplast genome). P12149. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).  	 Other						GO:0015935 - small ribosomal subunit, GO:0019843 - rRNA binding, GO:0009536 - plastid, GO:0006412 - translation, GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome		
14779	_	trnK(UUU), trnK, trnK-UUU	_	tRNA-Lys, Lys-tRNA(UUU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14780	RPS16	rps16	RIBOSOMAL PROTEIN S16	ribosomal protein S16	RIBOSOMAL PROTEIN S16		Pt	LOC_Osp1g00130. X15901: CAA34009 (Japonica Group chloroplast genome). P12151. FJ908401-FJ908415 (wild rice species). EU434222, EU434223 (O. rufipogon and O.sativa intron). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00130				GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0005840 - ribosome, GO:0009536 - plastid, GO:0006412 - translation		
14781	_	trnQ(UUG), trnQ, trnQ-UUG	_	tRNA-Gln, Gln-tRNA(UUG)			Pt	X15901 (Japonica Group chloroplast genome). FJ908228-FJ908242 (wild rice species, rps16-trnQ intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14782	_	trnS(GCU), trnS, trnS-GCU	_	tRNA-Ser, Ser-tRNA(GCU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14783	_	ORF100	_				Pt	LOC_Osp1g00160. X15901 (Japonica Group chloroplast genome). CAA34012.			LOC_Osp1g00160						
14784	_	trnS(UGA), trnS, trnS-UGA	_	tRNA-Ser, Ser-tRNA(UGA)			Pt	X15901 (Japonica Group chloroplast genome). FJ908575-FJ908588 (wild rice species, trnS-psbZ intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14786	_	trnG(GCC), trnG, trnG-GCC, trnG-UCC	_	tRNA-Gly, Gly-tRNA(GCC)			Pt	X15901 (Japonica Group chloroplast genome). AB436168-AB436226. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). trnG-UCC in Zhang et al. 2012.									
14787	_	trnG(GCC).p, trnG.p	_	tRNA-Gly pseudogene, trnG pseudogene			Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14788	_	trnfM(CAU), trnfM, trnfM-CAU	_	tRNA-Met, tRNA-fMet, fMet-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). FJ908575-FJ908588 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14789	_	trnG(UCC), trnG, trnG-UCC	_	tRNA-Gly, Gly-tRNA(UCC)			Pt	X15901 (Japonica Group chloroplast genome). FJ908500-FJ908589 (wild rice species). AP006728 (Oryza nivara chloroplast genome).									
14790	_	ORF91	_				Pt	X15901: CAA33982 (Japonica Group chloroplast genome). Q32759. LOC_Osp1g00200. AP006728 (Oryza nivara chloroplast genome). orf89 in Oryza nivara.			LOC_Osp1g00200				GO:0009536 - plastid, GO:0009507 - chloroplast		
14791	_	trnI.p	_	tRNA-Ile pseudogene			Pt	X15901 (Japonica Group chloroplast genome). 									
14792	_	ORF70	_				Pt	LOC_Osp1g00210. X15901: CAA33983 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). 			LOC_Osp1g00210						
14793	_	trnT(GGU), trnT, trnT-GGU	_	tRNA-Thr, Thr-tRNA(GGU)			Pt	X15901 (Japonica Group chloroplast genome). FJ908608-FJ908622 (wild rice species, trnT-trnD intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14794	_	trnT(GGU).p, trnT.p	_	tRNA-Thr pseudogene, trnT pseudodogene			Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). 									
14795	_	trnE(UUC), trnE, trnE-UUC	_	tRNA-Glu, Glu-tRNA(UUC)			Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome).									
14796	_	trnY(GUA), trnY, tmY-GUA	_	tRNA-Tyr, Tyr-tRNA(GUA)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14797	_	trnD(GUC), trnD, trnD-GUC	_	tRNA-Asp, Asp-tRNA(GUC)			Pt	X15901 (Japonica Group chloroplast genome). FJ908608-FJ908622 (wild rice species, trnT-trnD intergenic spacer). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14798	_	ORF29, petN	_	cytochrome b6/f complex subunit VIII			Pt	X15901: CAA33985 (Japonica Group chloroplast genome). P61042. LOC_Osp1g00230. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00230				GO:0055114 - oxidation reduction, GO:0017004 - cytochrome complex assembly, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0009512 - cytochrome b6f complex, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity		
14799	ATPF	atpF, OsatpF	ATP SYNTHASE CF0 SUBUNIT I	ATPase I subunit, ATP synthase CF0 subunit I	ATP SYNTHASE CF0 SUBUNIT I		Pt	LOC_Osp1g00300 (ATP synthase CF0 B chain). X15901:CAA33992 (Japonica Group chloroplast genome). AY522330: AAS46117: Nip045 (cultivar Nipponbare), AY522331 (isolate PA64S). P0C2Z0. FJ908129-FJ908143 (wild rice species). GU592207:ADD62830 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00300				GO:0005524 - ATP binding, GO:0009536 - plastid, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0015986 - ATP synthesis coupled proton transport, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane		
14800	_	trnR(UCU), trnR, trnR-UCU	_	tRNA-Arg, Arg-tRNA(UCU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14801	YCF3	ORF170, ycf3, IRF170, ycf3-1, ycf3-2	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3	Ycf3 protein, photosystem I assembly protein Ycf3, hypothetical chloroplast RF34	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3		Pt	LOC_Osp1g00350. X15901: CAA33997 (Japonica Group chloroplast genome). P12203. FJ908673-FJ908687 (wild rice species). IRF = an introncontaining reading frame (Shimada and Sugiura 1991). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00350				GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0015979 - photosynthesis		
14802	_	trnS(GGA), trnS, trnS-GGA	_	tRNA-Ser, Ser-tRNA(GGA)			Pt	X15901 (Japonica Group chloroplast genome).  JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14803	_	trnT(UGU), trnT, trnT-UGU	_	tRNA-Thr, Thr-tRNA(UGU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14804	_	trnL(UAA), trnL, trnL-UAA	_	tRNA-Leu, transfer RNA leucine, Leu-tRNA(UAA)			Pt	X15901 (Japonica Group chloroplast genome). FJ908533-FJ908538 (wild rice species). AF520764-AF520771 (wild rice species).  DQ131552, DQ131553 (O.sativa and O. punctata). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).  EF137577 (partial sequence).									
14805	_	trnF(GAA), trnF, trnF-GAA	_	tRNA-Phe, transfer RNA phenylalanine, Phe-tRNA(GAA)			Pt	X15901 (Japonica Group chloroplast genome). AF520764-AF520771 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). EF137577 (partial sequence).									
14806	_	ORF42	_				Pt	X15901: CAA34005 (Japonica Group chloroplast genome).									
14807	_	ORF133	_	open reading frame 133			Pt	LOC_Osp1g00430. X15901:CAA34006 (Japonica Group chloroplast genome). AB436286-AB436344 (wild rice species, ORF133-psa1 intergenic region). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00430						
14808	_	ORF85	_				Pt	X15901: CAA33959 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf73 in Oryza nivara. 									
14809	_	ORF230, cemA	_	chloroplast envelope membrane protein			Pt	LOC_Osp1g00470. X15901:CAA33960 (Japonica Group chloroplast genome). P12212. GU592207:ADD62843 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). ycf10 in Oryza nivara.			LOC_Osp1g00470				GO:0016021 - integral to membrane, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0009706 - chloroplast inner membrane, GO:0009536 - plastid		
14810	_	ORF40, psbJ	_	photosystem II protein J			Pt	LOC_Osp1g00490. X15901: CAA33962 (Japonica Group chloroplast genome). P12189. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00490				GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009539 - photosystem II reaction center, GO:0015979 - photosynthesis, GO:0009536 - plastid		
14811	PSBL	psbL	_	PSII L protein, photosystem II protein L			Pt	X15901:CAA33963 (Japonica Group chloroplast genome). P60137. LOC_Osp1g00500. GU592207:ADD62845 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00500				GO:0015979 - photosynthesis, GO:0009539 - photosystem II reaction center, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane		
14812	_	ORF31, petL	_	cytochrome b6/f complex subunit VI			Pt	X15901: CAA33966 (Japonica Group chloroplast genome). P12180. LOC_Osp1g00530. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00530				GO:0009536 - plastid, GO:0009512 - cytochrome b6f complex, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0055114 - oxidation reduction, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis, GO:0009535 - chloroplast thylakoid membrane		
14813	_	trnW(CCA), trnW, trnW-CCA	_	tRNA-Trp, Trp-tRNA(CCA)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14814	_	trnP(UGG), trnP, trnP-UGG	_	tRNA-Pro, Pro-tRNA(UGG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14815	_	ORF44, psaJ	_	photosystem I subunit IX			Pt	X15901: CAA33968 (Japonica Group chloroplast genome). P12192. LOC_Osp1g00550. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00550				GO:0015979 - photosynthesis, GO:0009522 - photosystem I, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane		
14816	_	rpl20	_	ribosomal protein L20			Pt	X15901: CAA33971 (Japonica Group chloroplast genome). P12139. LOC_Osp1g00580. FJ908162-FJ908176 (wild rice species). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00580				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast, GO:0005840 - ribosome, GO:0009536 - plastid, GO:0019843 - rRNA binding		
14817	_	ORF35, psbT	_	photosystem II protein T			Pt	X15901: CAA33974 (Japonica Group chloroplast genome). P69674. LOC_Osp1g00610. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00610				GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009536 - plastid, GO:0009539 - photosystem II reaction center, GO:0015979 - photosynthesis		
14818	PSBN	psbN, PsbN	PHOTOSYSTEM II PROTEIN N 	PSII low MW protein, photosystem II protein N	PHOTOSYSTEM II PROTEIN N 		Pt	X15901:CAA33975 (Japonica Group chloroplast genome). P68853. LOC_Osp1g00630. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00630				GO:0015979 - photosynthesis, GO:0009539 - photosystem II reaction center, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane		
14819	PETB	petB, OsPETB	_	cytochrome B6, chloroplast apocytochrome b6, cytochrome b6f complex subunit PetB			Pt	X15901: CAA33977 (Japonica Group chloroplast genome). P12123. FJ908368-FJ908382 (wild rice species). M35995. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00640				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis, GO:0009536 - plastid, GO:0016491 - oxidoreductase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0020037 - heme binding, GO:0022904 - respiratory electron transport chain, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity		
14820	RPL36	rpl36	RIBOSOMAL PROTEIN L36	ribosomal protein L36	RIBOSOMAL PROTEIN L36		Pt	X15901:CAA33981 (Japonica Group chloroplast genome). P62727. LOC_Osp1g00680. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g00680				GO:0009536 - plastid, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast		
14821	_	ORF82	_				Pt	LOC_Osp1g00750. X15901: CAA33936 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). rps12/orf132/orf82 in Oryza nivara.			LOC_Osp1g00750						
14822	_	trnH(GUG), trnH, trnH-GUG	_	tRNA-His, His-tRNA(GUG)			Pt	X15901 (Japonica Group chloroplast genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14823	_	ORF137	_				Pt	LOC_Osp1g00760. X15901: CAA33937 (Japonica Group chloroplast genome). Q36996. AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00760				GO:0009507 - chloroplast, GO:0009536 - plastid		
14824	_	trnI(CAU), trnI, trnI-CAU	_	tRNA-Ile, Ile-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). M22826. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14825	_	ORF28	_				Pt	LOC_Osp1g00790. X15901: CAA33939 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00790						
14826	_	ORF249	_				Pt	LOC_Osp1g00800. X15901: CAA33940 (Japonica Group chloroplast genome). Q37066. AP006728 (Oryza nivara chloroplast genome). orf222 in Oryza nivara.			LOC_Osp1g00800				GO:0009507 - chloroplast, GO:0009536 - plastid		
14827	_	trnL(CAA), trnL, trnL-CAA, L-CAA	_	tRNA-Leu, Leu-tRNA(CAA)			Pt	X15901 (Japonica Group chloroplast genome).  JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14828	NDHB	ndhB, NDH2, NADH2	NADH DEHYDROGENASE SUBUNIT 2	NADH dehydrogenase subunit 2, NADH dehydrogenase ND2, NADH-plastoquinone oxidoreductase subunit 2, Hydroxylamine reductase	NADH DEHYDROGENASE SUBUNIT 2		Pt	LOC_Osp1g00810. X15901: CAA33941 (Japonica Group chloroplast genome). P0CD23. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g00810				GO:0009535 - chloroplast thylakoid membrane, GO:0048038 - quinone binding, GO:0042773 - ATP synthesis coupled electron transport, GO:0019684 - photosynthesis, light reaction, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
14829	_	ORF72	_				Pt	X15901: CAA33943 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf85 in Oryza nivara.									
14830	_	ORF85	_				Pt	LOC_Osp1g00830. X15901: CAA33944 (Japonica Group chloroplast genome). Q32766. AP006728 (Oryza nivara chloroplast genome). orf72 in Oryza nivara.			LOC_Osp1g00830				GO:0009536 - plastid, GO:0009507 - chloroplast		
14831	_	trnV, trnV(GAC), trnV-GAC	_	tRNA-Val, Val-tRNA(GAC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14832	16S  rRNA	rrn16	16S RIBOSOMAL RNA	16S ribosomal RNA, 16S rRNA, 16S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome). 									
14833	_	trnI(GAU), trnI, trnI-GAU	_	tRNA-Ile, Ile-tRNA(GAU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14834	_	ORF133, ycf68	_	hypothetical chloroplast RF68			Pt	LOC_Osp1g00840. X15901: CAA33945 (Japonica Group chloroplast genome). P12173. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00840				GO:0009507 - chloroplast, GO:0009536 - plastid		
14835	_	trnA(UGC), trnA, trnA-UGC	_	tRNA-Ala, Ala-tRNA(UGC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14836	23S  rRNA	rrn23	23S RIBOSOMAL RNA	23S ribosomal RNA, 23S rRNA, 23S rDNA			Pt	X15901 (Japonica Group chloroplast genome). U49840. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14837	4.5S  rRNA	rrn4.5	4.5S RIBOSOMAL RNA	4.5S ribosomal RNA, 4.5S rRNA, 4.5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14838	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S ribosomal RNA, 5S rRNA, 5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14839	_	trnR(ACG), trnR, trnR-ACG	_	tRNA-Arg, Arg-tRNA(ACG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14840	_	ORF23	_				Pt	LOC_Osp1g00850. X15901: CAA33946 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00850						
14841	_	trnN(GUU), trnN, trnN-GUU	_	tRNA-Asn, Asn-tRNA(GUU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14842	_	ORF63	_				Pt	LOC_Osp1g00860. X15901: CAA33947 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00860						
14843	_	trnL(UAG), trnL, trnL-UAG	_	tRNA-Leu, Leu-tRNA(UAG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14844	NDHI	ORF178, ndhI	NADH DEHYDROGENASE SUBUNIT I 	NADH-plastoquinone oxidoreductase subunit I, NADH dehydrogenase subunit I	NADH DEHYDROGENASE SUBUNIT I 		Pt	X15901: CAA33909 (Japonica Group chloroplast genome). P0C385, P0C386. LOC_Osp1g00950. GU592207: ADD62876 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46161: Nip173 (cultivar Nipponbare), AY522331 (isolate PA64S).	 Biochemical character		LOC_Osp1g00950				GO:0048038 - quinone binding, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0019684 - photosynthesis, light reaction, GO:0005506 - iron ion binding, GO:0051539 - 4 iron, 4 sulfur cluster binding		
14845	NDHA	ndhA	NADH DEHYDROGENASE SUBUNIT 1	NADH dehydrogenase subunit 1, NADH dehydrogenase ND1, NADH-plastoquinone oxidoreductase subunit 1	NADH DEHYDROGENASE SUBUNIT 1		Pt	LOC_Osp1g00960. X15901:CAA33910 (Japonica Group chloroplast genome). P12124. FJ908270-FJ908284 (wild rice species). GU592207:ADD62877 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).  AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: Nip174 (cultivar Nipponbare), AY522331 (isolate PA64S). 	 Biochemical character		LOC_Osp1g00960				GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0048038 - quinone binding, GO:0016655 - oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, GO:0019684 - photosynthesis, light reaction		
14846	_	ORF63	_				Pt	LOC_Osp1g00990. X15901: CAA33913 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g00990						
14847	_	trnN(GUU), trnN, trnN-GUU	_	tRNA-Asn, Asn-tRNA(GUU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14848	_	ORF23	_				Pt	LOC_Osp1g01000. X15901: CAA33914 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01000						
14849	_	trnR(ACG), trnR, trnR-ACG	_	tRNA-Arg, Arg-tRNA(ACG)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14850	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S ribosomal RNA, 5S rRNA, 5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14851	4.5S  rRNA	rrn4.5	4.5S RIBOSOMAL RNA	4.5S ribosomal RNA, 4.5S rRNA, 4.5S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). GU592207 (Japonica chloroplast comlete genome).									
14852	23S  rRNA	rrn23	23S RIBOSOMAL RNA	23S ribosomal RNA, 23S rRNA, 23S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14853	_	trnA(UGC), trnA, trnA-UGC	_	tRNA-Ala, Ala-tRNA(UGC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14854	_	trnI(GAU), trnI, trnI-GAU	_	tRNA-Ile, Ile-tRNA(GAU)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14855	_	ORF133, ycf68	_	hypothetical chloroplast RF68			Pt	X15901: CAA33915 (Japonica Group chloroplast genome). P12173. LOC_Osp1g01010. ORF within trnI intron. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01010				GO:0009507 - chloroplast, GO:0009536 - plastid		
14856	16S  rRNA	rrn16	16S RIBOSOMAL RNA	16S ribosomal RNA, 16S rRNA, 16S rDNA			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14857	_	trnV, trnV(GAC), trnV-GAC	_	tRNA-Val, Val-tRNA(GAC)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14858	_	ORF85	_				Pt	LOC_Osp1g01020. X15901: CAA33916 (Japonica Group chloroplast genome). Q32766. AP006728 (Oryza nivara chloroplast genome). orf72 in Oryza nivara.			LOC_Osp1g01020				GO:0009536 - plastid, GO:0009507 - chloroplast		
14859	_	ORF72	_				Pt	LOC_Osp1g01030. X15901: CAA33917 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf85 in Oryza nivara.			LOC_Osp1g01030						
14860	3'RPS12	3'rps12, 3'-rps12, rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Pt	LOC_Osp1g01040. X15901: CAA33918 (Japonica Group chloroplast genome). P12149. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Other		LOC_Osp1g01040				GO:0019843 - rRNA binding, GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0015935 - small ribosomal subunit, GO:0009536 - plastid		
14861	NDHB	ndhB	NADH DEHYDROGENASE SUBUNIT 2	NADH dehydrogenase subunit 2, NADH dehydrogenase ND2, NADH-plastoquinone oxidoreductase subunit 2	NADH DEHYDROGENASE SUBUNIT 2		Pt	LOC_Osp1g01060. X15901:CAA33920 (Japonica Group chloroplast genome). P0CD22. GU592207:ADD62881 (Japonica chloroplast comlete genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).	 Biochemical character		LOC_Osp1g01060				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0042773 - ATP synthesis coupled electron transport, GO:0006810 - transport, GO:0048038 - quinone binding, GO:0019684 - photosynthesis, light reaction, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane		
14862	_	trnL(CAA), trnL, trnL-CAA	_	tRNA-Leu, Leu-tRNA(CAA)			Pt	X15901 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14863	_	ORF249	_				Pt	X15901: CAA33921 (Japonica Group chloroplast genome). Q37066. LOC_Osp1g01070. AP006728 (Oryza nivara chloroplast genome). orf222 in Oryza nivara.			LOC_Osp1g01070				GO:0009507 - chloroplast, GO:0009536 - plastid		
14864	_	ORF28	_				Pt	LOC_Osp1g01080. X15901: CAA33922 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01080						
14865	_	trnI(CAU), trnI, trnI-CAU	_	tRNA-Ile, Ile-tRNA(CAU)			Pt	X15901 (Japonica Group chloroplast genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14866	_	ORF137	_				Pt	LOC_Osp1g01110. X15901: CAA33925 (Japonica Group chloroplast genome). Q36996. AP006728 (Oryza nivara chloroplast genome).			LOC_Osp1g01110				GO:0009507 - chloroplast, GO:0009536 - plastid		
14867	_	ORF82	_				Pt	LOC_Osp1g01120. X15901: CAA33926 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). orf132 in Oryza nivara.			LOC_Osp1g01120						
14868	_	trnH(GUG), trnH, trnH-GUG	_	tRNA-His, His-tRNA(GUG)			Pt	X15901 (Japonica Group chloroplast genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome).									
14869	RPS19	rps19	RIBOSOMAL PROTEIN S19	ribosomal protein S19	RIBOSOMAL PROTEIN S19		Pt	LOC_Osp1g01130. X15901:CAA33927 (Japonica Group chloroplast genome). P12153. FJ908434-FJ908448 (wild rice species). GU592207:ADD62884 (Japonica chloroplast comlete genome). L40578. JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). AY522329 (isolate 93-11 chloroplast comlete genome), AY522331 (isolate PA64S).	 Other		LOC_Osp1g01130				GO:0009507 - chloroplast, GO:0019843 - rRNA binding, GO:0015935 - small ribosomal subunit, GO:0009536 - plastid, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
14870	26S  rRNA	rrn26	26S RIBOSOMAL RNA	26S ribosomal RNA, 26S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14871	RPOC1	rpoC1	RNA POLYMERASE C1		RNA POLYMERASE C1		Mt		 Biochemical character								
14872	RPOC2.P	rpoC2.p, rpoC2	RNA POLYMERASE C2 PSEUDOGENE		RNA POLYMERASE C2 PSEUDOGENE		Mt	D13110 (a transferred chloroplast DNA sequence).									
14873	_	atpH, atpH.p	_	ATP synthase CF0 C chain pseudogene, ATPase III subunit pseudogene			Mt	D13098 (a transferred chloroplast DNA sequence).	 Biochemical character								
14874	_	atpA, atpA.p	_	ATP synthase CF1 alpha chain pseudogene, ATPase alpha subunit pseudogene			Mt	D13099 (a transferred chloroplast DNA sequence).	 Biochemical character								
14875	_	trnL	_	tRNA-Leu			Mt	D13112 (a transferred chloroplast DNA sequence).									
14876	_	ORF159	_				Mt	D13112 (a transferred chloroplast DNA sequence).									
14877	NDHK	ndhK	NADH DEHYDROGENASE SUBUNIT 11	NADH dehydrogenase subunit 11, NADH dehydrogenase ND11	NADH DEHYDROGENASE SUBUNIT 11		Mt		 Biochemical character								
14878	RPL23.P	rpl23.p	RIBOSOMAL PROTEIN L23 PSEUDOGENE	ribosomal protein L23 pseudogene			Mt	D13101 (a transferred chloroplast DNA sequence contains rpl23 pseudogene).									
14879	_	ORF85	_				Mt	D13103 (a transferred chloroplast DNA sequence).									
14880	CLPP.P	ClpP, ClpP.p	CHLOROPLAST PROTEASE PSEUDOGENE	plastidic caseinolytic protease pseudogene, chloroplast Clp pseudogene			Mt	D13103 (a transferred chloroplast DNA sequence).									
14881	_	petB, petB.p	_	cytochrome B6 pseudogene			Mt	D13104 (a transferred chloroplast DNA sequence).									
14882	RPL14.P	rpl14, rpl14.p	RIBOSOMAL PROTEIN L14 PSEUDOGENE	ribosomal protein L14 pseudogene			Mt	D13105 (a transferred chloroplast DNA sequence).	 Other								
14884	NDHE	ndhE	NADH DEHYDROGENASE SUBUNIT 4L	NADH dehydrogenase subunit 4L, NADH dehydrogenase ND4L	NADH DEHYDROGENASE SUBUNIT 4L		Mt	D13108 (a transferred chloroplast DNA sequence).									
14885	NDHG	ndhG	NADH DEHYDROGENASE SUBUNIT 6	NADH dehydrogenase subunit 6, NADH dehydrogenase ND6	NADH DEHYDROGENASE SUBUNIT 6		Mt	D13108 (a transferred chloroplast DNA sequence).									
14888	RPS4	rps4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME	S4 subunit of the mitochondrial ribosome, Ribosomal protein S4	S4 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME		Mt	D13112 (a transferred chloroplast DNA sequence).									
14889	RPS19.P	rps19, rps19.p	RIBOSOMAL PROTEIN S19 PSEUDOGENE	ribosomal protein S19 pseudogene			Mt	D13101 (a transferred chloroplast DNA sequence contains rps19 pseudogene).									
14890	_	trnV(GAC), trnV	_	tRNA-Val			Mt	D13103 (a transferred chloroplast DNA sequence).									
14895	_	Rrt1	_	rice retrotransposon 1				Copia-like retrotransposon. Z75496.	 Other								
14896	_	Rrt2	_	rice retrotransposon 2			3	Copia-like retrotransposon. Z75497.	 Other								
14897	_	Rrt3	_	rice retrotransposon 3				Copia-like retrotransposon. Z75498.	 Other								
14898	_	Rrt4	_	rice retrotransposon 4				Copia-like retrotransposon. Z75499.	 Other								
14899	_	Rrt5	_	rice retrotransposon 5				Copia-like retrotransposon. Z75500.	 Other								
14900	_	Rrt6	_	rice retrotransposon 6				Copia-like retrotransposon. Z75501.	 Other								
14901	_	Rrt7	_	rice retrotransposon 7				Copia-like retrotransposon. Z75502.	 Other								
14902	_	Rrt8	_	rice retrotransposon 8				Copia-like retrotransposon. Z75503.	 Other								
14903	_	Rrt9	_	rice retrotransposon 9				Copia-like retrotransposon. Z75504.	 Other								
14904	_	Rrt10	_	rice retrotransposon 10				Copia-like retrotransposon. Z75505.	 Other								
14905	_	Rrt11	_	rice retrotransposon 11			3	Copia-like retrotransposon. Z75506.	 Other								
14906	_	Rrt12	_	rice retrotransposon 12				Copia-like retrotransposon. Z75507.	 Other								
14907	_	Rrt13	_	rice retrotransposon 13				Copia-like retrotransposon. Z75508.	 Other								
14908	_	Rrt14	_	rice retrotransposon 14				Copia-like retrotransposon. Z75509.	 Other								
14909	_	Rrt15	_	rice retrotransposon 15				Copia-like retrotransposon. Z75510.	 Other								
14910	_	Rrt16	_	rice retrotransposon 16				Copia-like retrotransposon. Z75511.	 Other								
14911	_	Rrt17	_	rice retrotransposon 17				Copia-like retrotransposon. Z75512.	 Other								
14912	_	Rrt18	_	rice retrotransposon 18				Copia-like retrotransposon. Z75513.	 Other								
14913	_	Rrt19	_	rice retrotransposon 19				Copia-like retrotransposon. Z75514.	 Other								
14914	_	Rrt20	_	rice retrotransposon 20				Copia-like retrotransposon. Z75515.	 Other								
14915	_	Rrt21	_	rice retrotransposon 21				Copia-like retrotransposon. Z75516.	 Other								
14916	_	Rrt22A	_	rice retrotransposon 22A			9	Copia-like retrotransposon. Z75517.	 Other								
14917	_	Rrt22B	_	rice retrotransposon 22B			8	Copia-like retrotransposon. Z75517.	 Other								
14918	_	Rrt22C	_	rice retrotransposon 22C			4	Copia-like retrotransposon. Z75517.	 Other								
14919	_	Rrt23	_	rice retrotransposon 23				Copia-like retrotransposon. Z75518.	 Other								
14920	_	RILN1	_	RIce LiNe No. 1				LINE retrotransposon. AB016096.	 Other								
14921	_	RILN2	_	RIce LiNe No. 2				LINE retrotransposon. AB016097.	 Other								
14922	_	RILN3	_	RIce LiNe No. 3				LINE retrotransposon. AB016098.	 Other								
14923	_	RILN4	_	RIce LiNe No. 4			9	LINE retrotransposon. AB016099.	 Other								
14924	_	RILN5	_	RIce LiNe No. 5				LINE retrotransposon. AB016100. chromosome 1, 3, 6 and 8.	 Other								
14925	_	RILN6	_	RIce LiNe No. 6				LINE retrotransposon. AB016101.	 Other								
14926	_	RILN7	_	RIce LiNe No. 7				LINE retrotransposon. AB016102.	 Other								
14927	_	RILN8	_	RIce LiNe No. 8				LINE retrotransposon. AB016103.	 Other								
14928	_	RILN9	_	RIce LiNe No. 9				LINE retrotransposon. AB016104.	 Other								
14929	_	RILN10	_	RIce LiNe No. 10				LINE retrotransposon. AB016105.	 Other								
14930	_	RILN11	_	RIce LiNe No. 11				LINE retrotransposon. AB016106.	 Other								
14931	_	RILN12	_	RIce LiNe No. 12				LINE retrotransposon. AB016107.	 Other								
14932	_	RILN13	_	RIce LiNe No. 13				LINE retrotransposon. AB016108.	 Other								
14933	_	RILN14	_	RIce LiNe No. 14				LINE retrotransposon. AB016109.	 Other								
14936	_	Retrosat1	_	Retrosat 1 retrotransposon				a gypsy-like retroelement. AF111709.	 Other						GO:0032196 - transposition		
14937	_	hipa	_	CACTA-like transposon HIPA			1	a CACTA-like transposon. AP002484: 15798-26337. AF537367.	 Other						GO:0032196 - transposition		
14938	_	houba	_	houba copia-like retrotransposon			10	a copia-like retroelement. AC087192: 88449-94870. AF537365.	 Other						GO:0032196 - transposition		
14939	_	hopi	_	hopi retrotransposon			1	a gypsy-like retroelement. AP000837: 63988-76831. AF537364.	 Other						GO:0032196 - transposition		
14940	_	dagul	_	dagul gypsy-type retrotransposon			1	a gypsy-like retroelement. AP003734: 60406-73828. AF537366.	 Other						GO:0032196 - transposition		
14941	_	A	_	ORF A, ORF1				an ORF in Ping. AB087616. BAC15770. BK000587. DAA00399. 									
14942	_	B	_	ORF B, ORF2				an ORF in Ping. AB087616. BAC15770. BK000587. DAA00400. 	 Biochemical character						GO:0016788 - hydrolase activity, acting on ester bonds		
14943	25S rRNA	25S rRNA	25S RIBOSOMAL RNA	25S RIBOSOMAL RNA			9	AP008245, AP009051.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
14944	18S rRNA	18S rRNA	18S RIBOSOMAL RNA	18S RIBOSOMAL RNA			9	AP008245, AP009051.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14945	5.8S rRNA	5.8S rRNA	5.8S RIBOSOMAL RNA	5.8S RIBOSOMAL RNA			9	AP008245, AP009051.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
14946	_		_				1	an NBS-LRR class R-gene. EF642193-EF642213 (O. sativa, O. rufipogon, O. nivara). FJ709741-FJ709751 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0335700	LOC_Os01g23380.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14947	_		_				7	an NBS-LRR class R-gene. EF642468-EF642487 (O. sativa, O. rufipogon, O. nivara). FJ709910-FJ709920 (O. sativa, O. rufipogon, O. glumipatula). R Gene present in both Nipponbare and 9311. EF533750-EF533756 (partial cds).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0481400	LOC_Os07g29820.1				GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0005524 - ATP binding, GO:0017111 - nucleoside-triphosphatase activity	TO:0000074 - blast disease	
14948	_		_				2	an NBS-LRR class R-gene. EF642444-EF642462 (O. sativa, O. rufipogon, O. nivara). FJ709771-FJ709782 (O. sativa, O. rufipogon, O. glumipatula). LOC_Os02g25900. R Gene present in both Nipponbare and 9311.  EF533729-EF533734 (partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0456800	LOC_Os02g25900.1, LOC_Os02g25900.2				GO:0043531 - ADP binding, GO:0006952 - defense response		
14949	_		_				1	an NBS-LRR class R-gene. EF642235-EF642256 (O. sativa, O. rufipogon, O. nivara). FJ710017-FJ710025 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0953200	LOC_Os01g72390.1						
14950	_		_				1	an NBS-LRR class R-gene. EF642151-EF642171 (O. sativa, O. rufipogon, O. nivara). FJ709726-FJ709740 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0269700	LOC_Os01g16390.1				GO:0043531 - ADP binding		
14951	_		_				1	an NBS-LRR class R-gene. EF642172-EF642192 (O. sativa, O. rufipogon, O. nivara). FJ709996-FJ710006 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os01g0269800	LOC_Os01g16400.1				GO:0006952 - defense response, GO:0009609 - response to symbiotic bacterium, GO:0043531 - ADP binding		PO:0009005 - root 
14952	_		_				1	an NBS-LRR class R-gene. EF642214-EF642234 (O. sativa, O. rufipogon, O. nivara). FJ710007-FJ710016 (O. sativa, O. rufipogon, O. glumipatula).  LOC_Os01g33690 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Stress tolerance	Os01g0520600					GO:0043531 - ADP binding		
14953	_		_				8	an NBS-LRR class R-gene. EF642338-EF642358 (O. sativa, O. rufipogon, O. nivara). FJ709971-FJ709980 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os08g0193700	LOC_Os08g09430.1						
14954	_		_				6	an NBS-LRR class R-gene. EF642285-EF642296 (O. sativa, O. rufipogon, O. nivara). FJ709800-FJ709819  (O. sativa, O. rufipogon, O. glumipatula). 	 Tolerance and resistance - Stress tolerance	Os06g0158300	LOC_Os06g06380.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14955	_		_				6	an NBS-LRR class R-gene. EF642297-EF642308 (O. sativa, O. rufipogon, O. nivara). FJ709820-FJ709839 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os06g0158400	LOC_Os06g06390.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14956	_		_	NBS-LRR-type disease resistance protein			6	LOC_Os06g06400. an NBS-LRR class R-gene. EF642309-EF642320 (O. sativa, O. rufipogon, O. nivara). FJ709840-FJ709859 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os06g0158500	LOC_Os06g06400.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14957	_		_				6	an NBS-LRR class R-gene. EF642321-EF642337 (O. sativa, O. rufipogon, O. nivara). FJ710026-FJ710042 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os06g0698802/Os06g0698812	LOC_Os06g48520.1						
14958	_	PIC22	_	resistance gene analog PIC22			4	an NBS-LRR class R-gene. EF642270-EF642284 (O. sativa, O. rufipogon, O. nivara). FJ709783-FJ709799 (O. sativa, O. rufipogon, O. glumipatula). AF146269.	 Tolerance and resistance - Stress tolerance	Os04g0111900	LOC_Os04g02110.1, LOC_Os04g02110.2, LOC_Os04g02110.3				GO:0006952 - defense response, GO:0043531 - ADP binding		
14959	_		_				2	an NBS-LRR class R-gene. EF642257-EF642269 (O. sativa, O. rufipogon, O. nivara). FJ709752-FJ709770 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os02g0286700	LOC_Os02g18510.1				GO:0047746 - chlorophyllase activity, GO:0015996 - chlorophyll catabolic process, GO:0043531 - ADP binding		
14960	_		_				12	an NBS-LRR class R-gene. EF642402-EF642417 (O. sativa, O. rufipogon, O. nivara). FJ709658-FJ709677 (O. sativa, O. rufipogon, O. glumipatula). LOC_Os12g28250. R Gene present in both Nipponbare and 9311. EF533787-EF533791 (partial cds).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0468300	LOC_Os12g28250.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14961	_		_				12	an NBS-LRR class R-gene. EF642387-EF642401 (O. sativa, O. rufipogon, O. nivara). LOC_Os12g09730 (not found in MSU Rice Genome Annotation Project Release 7 data). R Gene present in Nipponbare only. (not in 9311).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0199100							
14962	_		_				10	an NBS-LRR class R-gene. EF642359-EF642369 (O. sativa, O. rufipogon, O. nivara). LOC_Os10g04674. R Gene present in Nipponbare only. (not in 9311). EF533757-EF533764 (O. sativa and O. rufipogon,partial cds). 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0136100	LOC_Os10g04674.1, LOC_Os10g04674.2, LOC_Os10g04674.3				GO:0043531 - ADP binding		
14963	_		_				11	an NBS-LRR class R-gene. EF642377-EF642386 (O. sativa, O. rufipogon, O. nivara). R Gene present in Nipponbare only. (not in 9311). LOC_Os11g45330. EF533769-EF533776  (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0678400	LOC_Os11g45330.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
14964	_		_				12	an NBS-LRR class R-gene. EF642418-EF642421 (O. sativa, O. rufipogon, O. nivara). R Gene present in Nipponbare only. (not in 9311). LOC_Os12g31620. EF533792, EF533793.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0500500	LOC_Os12g31620.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14965	_		_				6	an NBS-LRR class R-gene. EF642463-EF642467 (O. sativa, O. rufipogon, O. nivara). R Gene present in Nipponbare only. (not in 9311). LOC_Os06g16790. EF533747-EF533749 (partial cds).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0279900	LOC_Os06g16790.1				GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding		
14966	_		_				11	an NBS-LRR class R-gene. EF642370-EF642376 (O. sativa, O. rufipogon, O. nivara). LOC_Os11g11550. R Gene present in Nipponbare only. (not in 9311). EF533765-EF533768 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0222900	LOC_Os11g11550.1, LOC_Os11g11550.2				GO:0043531 - ADP binding, GO:0006952 - defense response		
14967	_		_				7	an NBS-LRR class R-gene. FJ709921-FJ709970 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os07g0599100	LOC_Os07g40810.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14968	_		_				7	an NBS-LRR class R-gene. FJ709860-FJ709909 (O. sativa, O. rufipogon, O. glumipatula).	 Tolerance and resistance - Stress tolerance	Os07g0186500	LOC_Os07g08890.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
14969	_		_				10	an NBS-LRR class R-gene. 	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os10g0370100	LOC_Os10g22484.1, LOC_Os10g22484.2, LOC_Os10g22484.3				GO:0010229 - inflorescence development, GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
14970	_	Vatp, OsSTA154	_	V-ATPase B-subunit, p-VATPase			5	AM179944-AM179987 (O. sativa, O. rufipogon). LOC_Os05g40900. a mature anther-preferentially expressed gene. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0487600	LOC_Os05g40900.1, LOC_Os05g40900.2						PO:0009066 - anther 
14971	DART01	Dart01	DNA-BASED ACTIVE RICE TRANSPOSON 01	DNA-based active rice transposon 01			6	AB442145, AB443429	 Other						GO:0032196 - transposition		
14972	DART02	Dart02	DNA-BASED ACTIVE RICE TRANSPOSON 02	DNA-based active rice transposon 02				AB442146-AB442154.	 Other						GO:0032196 - transposition		
14973	DART28	Dart28	DNA-BASED ACTIVE RICE TRANSPOSON 28	DNA-based active rice transposon 28			10		 Other						GO:0032196 - transposition		
14974	_		_	Tpase, transposase				AB442145-AB442154, AB443429.	 Other						GO:0003677 - DNA binding		
14975	_	rpoC2	_	RNA polymerase C2, RNA polymerase beta'' chain, RNA polymerase beta subunit			Pt	GU592207:ADD62826 (Japonica chloroplast comlete genome).  AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: AAS46113: Nip038 (cultivar Nipponbare), AY522331 (isolate PA64S). 							GO:0009507 - chloroplast		
14976	_	psbN	_	photosystem II protein N			Pt	GU592207:ADD62852 (Japonica chloroplast comlete genome).							GO:0009507 - chloroplast		
14978	_	rpl2	_	ribosomal protein L2			Pt	GU592207:ADD62883 (Japonica chloroplast comlete genome). AY522330: AAS46166: Nip216b (cultivar Nipponbare), AY522331: AAS46229 (isolate PA64S).	 Other						GO:0005840 - ribosome, GO:0009507 - chloroplast		
14979	RL17	NP39, OsSNF7.2, SNF7.2, OsRL17	ROLLED LEAF 17	Copia-like retroelement pol polyprotein, ESCRT-III component SNF7.2, endosomal sorting complex required for transport III component SNF7.2, SNF7 family protein 2	ESCRT-III COMPONENT SNF7.2	rl17, Ossnf7.2	9	FJ811207-FJ811247 (Oryza glaberrima, Oryza barthii, Oryza nivara). TO:0006064: rolled leaf. 	 Vegetative organ - Leaf	Os09g0267600	LOC_Os09g09480.1, LOC_Os09g09480.2, LOC_Os09g09480.3				GO:0010600 - regulation of auxin biosynthetic process, GO:0009898 - internal side of plasma membrane, GO:0000815 - ESCRT III complex, GO:0001558 - regulation of cell growth, GO:0005771 - multivesicular body, GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway, GO:0007034 - vacuolar transport, GO:0042127 - regulation of cell proliferation, GO:0015031 - protein transport, GO:0005768 - endosome, GO:0006900 - membrane budding, GO:0048366 - leaf development	TO:0000655 - leaf development trait	PO:0001050 - leaf development stage 
14980	_	NP122	_	Rubredoxin-type Fe(Cys)4 protein family protein			8	FJ811166-FJ811206 (Oryza glaberrima, Oryza barthii, Oryza nivara).		Os08g0162600	LOC_Os08g06530.1				GO:0005506 - iron ion binding		
14981	_	NP1977, OsVDAC8, VDAC8, Os1977	_	eukaryotic type Porin family protein, voltage-dependent anion channel 8			3	FJ811289-FJ811329 (Oryza glaberrima, Oryza barthii, Oryza nivara). LOC_Os03g20750.		Os03g0323800	LOC_Os03g20750.1				GO:0005741 - mitochondrial outer membrane, GO:0055085 - transmembrane transport		
14982	GL1-6	Os0053, OsGL1-6	GLOSSY1-HOMOLOGOUS GENE 6	Glossy1-homologous gene 6			2	Putative aldehyde decarbonylase. FJ811248-FJ811288 (Oryza glaberrima, Oryza barthii, Oryza nivara). EF069573-EF069641 (O. sativa and wild rice species).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0814200	LOC_Os02g56920.1				GO:0016491 - oxidoreductase activity, GO:0005783 - endoplasmic reticulum, GO:0005506 - iron ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0009414 - response to water deprivation, GO:0010025 - wax biosynthetic process, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0000709 - leaf gloss	
14983	SAG12-2	CP, OsSAG12-2	SENESCENCE-ASSOCIATED GENE 12-2	Cys protease, cysteine protease, senescence-associated gene 12-2	SENESCENCE-ASSOCIATED GENE 12-2		8	a Homologue of AtSAG12. cysteine proteinase EP-B 1. the second closest homologue of AtSAG12.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0556900	LOC_Os08g44270.1				GO:0008234 - cysteine-type peptidase activity, GO:0010150 - leaf senescence, GO:0009411 - response to UV, GO:0009651 - response to salt stress, GO:0006508 - proteolysis, GO:0008219 - cell death	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000160 - UV light sensitivity	
14984	_		_		_		1	a Homologue of AtSAG12. cysteine proteinase 2.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Longevity,  Biochemical character,  Character as QTL - Grain quality	Os01g0971400	LOC_Os01g73980.1, LOC_Os01g73980.2				GO:0006508 - proteolysis, GO:0009270 - response to humidity, GO:0051603 - proteolysis involved in cellular protein catabolic process, GO:0008234 - cysteine-type peptidase activity, GO:0005615 - extracellular space, GO:0009408 - response to heat, GO:0005764 - lysosome, GO:0004197 - cysteine-type endopeptidase activity	TO:0000435 - seed longevity, TO:0000259 - heat tolerance, TO:0000441 - humidity related trait, TO:0000345 - seed viability, TO:0000250 - vigor related trait, TO:0010001 - percent germination	
14985	_		_		_		5	a Homologue of AtSAG12. cysteine proteinase 2.	 Biochemical character	Os05g0108600	LOC_Os05g01810.1				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
14986	_		_		_		1	a Homologue of AtSAG12. cysteine proteinase 2.	 Biochemical character	Os01g0613800	LOC_Os01g42790.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
14987	_		_		_		3	a Homologue of AtSAG12.  cysteine protease 1.	 Biochemical character	Os03g0752500	LOC_Os03g54130.1				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
14988	_		_		_		12	a Homologue of AtSAG12. vignain.	 Biochemical character	Os12g0273800	LOC_Os12g17540.1				GO:0006508 - proteolysis, GO:0008234 - cysteine-type peptidase activity		
14989	_	OsSAG12, SAG12	_	senescence-associated gene 12	_		4	a Homologue of AtSAG12. vignain.	 Biochemical character,  Vegetative organ - Leaf	Os04g0208200	LOC_Os04g13140.1				GO:0008234 - cysteine-type peptidase activity, GO:0010150 - leaf senescence, GO:0006508 - proteolysis	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
14990	_		_		_		7	a Homologue of AtSAG12. LOC_Os07g01800. cysteine proteinase EP-B.	 Biochemical character		LOC_Os07g01800				GO:0008234 - cysteine-type peptidase activity, GO:0006508 - proteolysis		
14991	CTR2	OsCTR2	CONSTITUTIVE TRIPLE-RESPONSE 2	CONSTITUTIVE TRIPLE-RESPONSE2		osctr2, Osctr2	2		 Vegetative organ - Culm,  Biochemical character,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os02g0527600 	LOC_Os02g32610.2, LOC_Os02g32610.3, LOC_Os02g32610.4				GO:0009873 - ethylene mediated signaling pathway, GO:0005524 - ATP binding, GO:0048573 - photoperiodism, flowering, GO:0004674 - protein serine/threonine kinase activity, GO:0009723 - response to ethylene stimulus	TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000346 - tiller number, TO:0000173 - ethylene sensitivity	
14992	_	OsCTR1, CTR1	_	CONSTITUTIVE TRIPLE-RESPONSE1, CONSTITUTIVE TRIPLE RESPONSE 1			9	LOC_Os09g39320. EAZ45706.	 Biochemical character	Os09g0566550	LOC_Os09g39320.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14993	_	OsCTR3, CTR3	_	CONSTITUTIVE TRIPLE-RESPONSE3			4	LOC_Os04g52140.	 Biochemical character	Os04g0610900 	LOC_Os04g52140.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
14994	_	OsG6PDH1	_	d-glucose 6-phosphate dehydrogenase 1			2		 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0600400	LOC_Os02g38840.1, LOC_Os02g38840.2				GO:0006098 - pentose-phosphate shunt, GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0050661 - NADP or NADPH binding		
14995	_	OsG6PDH2, OsG6PDH1, OsG6PDH	_	d-glucose 6-phosphate dehydrogenase 2, Glucose-6-phosphate dehydrogenase 1, cytosolic G6PDH			4	AY078072. OsG6PDH1 in Hou et al. 2007.	 Biochemical character	Os04g0485300	LOC_Os04g40874.1				GO:0050661 - NADP or NADPH binding, GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0006098 - pentose-phosphate shunt		
14996	_	OsG6PDH3, OsG6PDH2	_	d-glucose 6-phosphate dehydrogenase 3, Glucose-6-phosphate dehydrogenase 2, plastidic G6PDH			7	AY339367. OsG6PDH2 in Hou et al. 2006 and 2007.	 Biochemical character	Os07g0406300	LOC_Os07g22350.1				GO:0006098 - pentose-phosphate shunt, GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0050661 - NADP or NADPH binding		
14997	G6PDH4	OsG6PDH4	D-GLUCOSE 6-PHOSPHATE DEHYDROGENASE 4	d-glucose 6-phosphate dehydrogenase 4	D-GLUCOSE 6-PHOSPHATE DEHYDROGENASE 4		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0412800	LOC_Os03g29950.1, LOC_Os03g29950.2				GO:0009570 - chloroplast stroma, GO:0006006 - glucose metabolic process, GO:0009051 - pentose-phosphate shunt, oxidative branch, GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0006098 - pentose-phosphate shunt, GO:0050661 - NADP or NADPH binding, GO:0046686 - response to cadmium ion, GO:0010269 - response to selenium ion	TO:0000032 - selenium sensitivity	
14998	_	OsG6PDH5, G6PDH5	_	d-glucose 6-phosphate dehydrogenase 5, glucose-6-phosphate dehydrogenase 4			3	LOC_Os03g20300. glucose-6-phosphate dehydrogenase 4 in Wang et al. 2017.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0318500	LOC_Os03g20300.1, LOC_Os03g20300.2, LOC_Os03g20300.3				GO:0004345 - glucose-6-phosphate dehydrogenase activity, GO:0050661 - NADP or NADPH binding, GO:0006098 - pentose-phosphate shunt, GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity	
14999	VOZ2	OsVOZ2	VASCULAR PLANT ONE- ZINC FINGER 2	vascular plant one zinc finger protein 2	VASCULAR PLANT ONE- ZINC FINGER 2	osvoz2, osvoz2-1, osvoz2cas-1, osvoz2cas-2	5	GO:0140426: PAMP-triggered immunity signalling pathway.  GO:0140590: effector-mediated suppression of host defenses. GO:1900150: regulation of defense response to fungus. TO:0006054: arsenic content trait. GO:0110126: phloem loading.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0515700	LOC_Os05g43950.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0046685 - response to arsenic, GO:0031348 - negative regulation of defense response, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0050776 - regulation of immune response	TO:0000074 - blast disease	PO:0005421 - parenchyma , PO:0005352 - xylem , PO:0005417 - phloem 
15000	NAC58	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1	NAC DOMAIN-CONTAINING PROTEIN 58	NAC Family Transcription Factor OsNAP, NAC domain-containing protein 058, NAC domain-containing protein 58, prematurely senile 1	NAC DOMAIN-CONTAINING PROTEIN 58	ps1-D, osnap, osnap-1, osnap-2	3	OsNAP acts as a positive regulator of leaf senescence and this regulation may occur via the JA pathway (Zhou et al. 2013). TO:0001069: cooking quality trait.	 Coloration - Chlorophyll,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm,  Vegetative organ - Leaf,  Character as QTL - Grain quality,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0327800	LOC_Os03g21060.1				GO:0010150 - leaf senescence, GO:0010581 - regulation of starch biosynthetic process, GO:0015996 - chlorophyll catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009409 - response to cold, GO:0009738 - abscisic acid mediated signaling, GO:0010115 - regulation of abscisic acid biosynthetic process	TO:0000276 - drought tolerance, TO:0000340 - total soluble sugar content, TO:0000696 - starch content, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0000249 - leaf senescence, TO:0002667 - abscisic acid content, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002668 - jasmonic acid content	PO:0007633 - endosperm development stage , PO:0001054 - 4 leaf senescence stage , PO:0009010 - seed , PO:0001170 - seed development stage 
15002	PUP1	OsPUP1	PURINE PERMEASE 1	purine permease 1, PUP-type cytokinin transporter 1	PURINE PERMEASE 1		3	PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Biochemical character,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os03g0187800	LOC_Os03g08880.1				GO:0010184 - cytokinin transport, GO:0010229 - inflorescence development, GO:0009741 - response to brassinosteroid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0015211 - purine nucleoside transmembrane transporter activity, GO:0005783 - endoplasmic reticulum, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0002660 - cytokinin content, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000621 - inflorescence development trait, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000135 - leaf length, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000397 - grain size, TO:0000346 - tiller number, TO:0002689 - leaf sheath length, TO:0000547 - primary branch number, TO:0000557 - secondary branch number	PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0005417 - phloem , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0000034 - vascular system , PO:0009047 - stem 
15003	PUP2	OsPUP2	PURINE PERMEASE 2	purine permease 2, PUP-type cytokinin transporter 2	PURINE PERMEASE 2		9		 Biochemical character	Os09g0467300	LOC_Os09g29210.1, LOC_Os09g29210.2				GO:0016021 - integral to membrane		
15004	PUP3	OsPUP3	PURINE PERMEASE 3	purine permease 3, PUP-type cytokinin transporter 3	PURINE PERMEASE 3		9		 Biochemical character	Os09g0467400	LOC_Os09g29239.1, LOC_Os09g29239.2, LOC_Os09g29239.3				GO:0016021 - integral to membrane		
15005	PUP4	OsPUP4, BG3/OsPUP4, BG3, OsBG3	PURINE PERMEASE 4	purine permease 4, PUP-type cytokinin transporter 4, Big Grain3	PURINE PERMEASE 4	bg3, bg3-D, ospup4-1, ospup4-2	1	TO:0000975: grain width. GO:0048367: shoot system development. The RNA-seq and ChIP-seq data (BioProject PRJCA001920) can be found in the Beijing Institute of Genomics Data Center (http://bigd.big.ac.cn) under accession numbers CRA002105, CRA002106, CRA002107, and CRA002109.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os01g0680200	LOC_Os01g48800.1				GO:0010184 - cytokinin transport, GO:0009735 - response to cytokinin stimulus, GO:0005886 - plasma membrane, GO:0048573 - photoperiodism, flowering, GO:0048366 - leaf development, GO:0016021 - integral to membrane, GO:0048364 - root development, GO:0009690 - cytokinin metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000655 - leaf development trait, TO:0000592 - 1000-dehulled grain weight, TO:0006001 - salt tolerance, TO:0002660 - cytokinin content, TO:0000547 - primary branch number, TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0002759 - grain number, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000567 - tiller angle, TO:0000135 - leaf length, TO:0000590 - grain weight, TO:0002689 - leaf sheath length, TO:0000557 - secondary branch number, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000397 - grain size	PO:0009015 - portion of vascular tissue 
15006	PUP5	OsPUP5	PURINE PERMEASE 5	purine permease 5, PUP-type cytokinin transporter 5	PURINE PERMEASE 5		9		 Biochemical character	Os09g0557500	LOC_Os09g38510.1						
15007	PUP6	OsPUP6	PURINE PERMEASE 6	purine permease 6, PUP-type cytokinin transporter 6	PURINE PERMEASE 6		4		 Biochemical character	Os04g0587400	LOC_Os04g49748.1				GO:0016021 - integral to membrane		
15008	PUP7	OsPUP7	PURINE PERMEASE 7	purine permease 7, PUP-type cytokinin transporter 7	PURINE PERMEASE 7	ospup7, ospup7-1, ospup7-2	5	the closest homolog of OsPUP4.	 Character as QTL - Yield and productivity,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os05g0556800	LOC_Os05g48300.1				GO:0051302 - regulation of cell division, GO:0010184 - cytokinin transport, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0000397 - grain size, TO:0002759 - grain number, TO:0006001 - salt tolerance, TO:0000567 - tiller angle, TO:0000135 - leaf length	PO:0009015 - portion of vascular tissue 
15009	PUP8	OsPUP8	PURINE PERMEASE 8	purine permease 8, PUP-type cytokinin transporter 8	PURINE PERMEASE 8		1		 Biochemical character	Os01g0504100	LOC_Os01g31940.1				GO:0016021 - integral to membrane		
15010	PUP10	OsPUP10	PURINE PERMEASE 10	purine permease 10, PUP-type cytokinin transporter 10	PURINE PERMEASE 10		4		 Biochemical character	Os04g0587300	LOC_Os04g49739.1				GO:0016021 - integral to membrane		
15011	PUP11	OsPUP11	PURINE PERMEASE 11	purine permease 11, PUP-type cytokinin transporter 11	PURINE PERMEASE 11		2		 Biochemical character	Os02g0689200	LOC_Os02g46380.1, LOC_Os02g46380.2, LOC_Os02g46380.3				GO:0016021 - integral to membrane		
15012	PUP12	OsPUP12	PURINE PERMEASE 12	purine permease 12, PUP-type cytokinin transporter 12	PURINE PERMEASE 12		9		 Biochemical character	Os09g0548600	LOC_Os09g37640.1						
15013	PUP13	OsPUP13	PURINE PERMEASE 13	purine permease 13, PUP-type cytokinin transporter 13	PURINE PERMEASE 13		4		 Biochemical character	Os04g0587500	LOC_Os04g49757.2, LOC_Os04g49757.1				GO:0016021 - integral to membrane		
15014	AN1	An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, OsRAE1, OsAn-1, OgRAE1	AWN1	Awn-1, basic helix-loop-helix protein 093, Regulatory of awn elongation 1, REGULATOR OF AWN ELONGATION 1, Regulator of Awn Elongation 1, Awn4-2		an-1, Osrae1	4	a bHLH transcription factor. An-1 regulates the formation of awn primordial (Gu et al. 2015). Awn4-2 in Li et al. 2016. OgRAE1 (O. glaberrima RAE1). PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Other,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity	Os04g0350700	LOC_Os04g28280.1					TO:0002734 - awn presence, TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0000072 - awn length	PO:0025349 - awn 
15016	_	OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63, OsMYB58/63b, MYB58/63b, Os2R_MYB51, 2R_MYB51	_	myb transcription factor 58/63, transcription factor MYB58/63, R2R3-MYB Transcription Factor 51			4	OsMYB58/63b in Zhao et al. 2019.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0594100	LOC_Os04g50770.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion		
15017	_	OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a, Os2R_MYB5, 2R_MYB5	_	myb transcription factor 55/61, transcription factor MYB55/61, R2R3-MYB Transcription Factor 5		myb61a, myb61a-1	1	MYB61 in Huang et al. 2015, Ye et al. 2018, Wang et al. 2019, Yu et al. 2019, He et al. 2020, Naithani et al. 2023. a CESA regulator. GO:2001006: regulation of cellulose biosynthetic process. GO:0099402: plant organ development.	 Other,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os01g0285300	LOC_Os01g18240.1				GO:0005634 - nucleus, GO:0009832 - plant-type cell wall biogenesis, GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0003682 - chromatin binding, GO:0003677 - DNA binding	TO:0000524 - submergence tolerance	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
15018	_	OsMYB42/85, MYB42/85, OsMYB85, MYB85, Os2R_MYB85, 2R_MYB85	_	myb transcription factor 42/85, transcription factor MYB42/85, R2R3-MYB Transcription Factor 85			9	R2R3-MYB. AY459343, CB676151. AJ311053. GO:1901141: regulation of lignin biosynthetic process.	 Other	Os09g0532900	LOC_Os09g36260.1, LOC_Os09g36250.1				GO:0003682 - chromatin binding, GO:0009809 - lignin biosynthetic process, GO:0005634 - nucleus, GO:0009834 - secondary cell wall biogenesis, GO:0003677 - DNA binding		
15019	CEF1	OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L, OsMYB93, MYB93, OsFC9, FC9, Os2R_MYB74, 2R_MYB74	CULM EASILY FRAGILE 1	myb transcription factor 103, transcription factor MYB103, Oryza sativa MYB103 Like, culm easily fragile 1, fragile culm 9, R2R3-MYB Transcription Factor 74		cef1, Osfc9, myb103	8	closely related to AtMYB103. GO:2001006: regulation of cellulose biosynthetic process. OsMYB93 in Abdullah-Zawawi et al. 2021. TO:0000993: cellulose content.	 Other,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os08g0151300	LOC_Os08g05520.1				GO:0009834 - secondary cell wall biogenesis, GO:0010215 - cellulose microfibril organization, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0009740 - gibberellic acid mediated signaling, GO:0030244 - cellulose biosynthetic process	TO:0000166 - gibberellic acid sensitivity, TO:0000200 - brittle culm, TO:0000731 - lignin content, TO:0000085 - leaf rolling	
15020	_	OsBLH6	_	BEL1-like homeodomain gene 6, bell-like homeodomain-containing transcription factor 6			3		 Other	Os03g0165300	LOC_Os03g06930.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
15022	NAC82	OsSWN6, ONAC082, ONAC82	NAC DOMAIN-CONTAINING PROTEIN 82	secondary wall NAC transcription factor 6, secondary wall-associated NAC 6, SECONDARY WALL NAC DOMAIN PROTEIN 6, NAC domain-containing protein 082, NAC domain-containing protein 82	NAC DOMAIN-CONTAINING PROTEIN 82		4	JN634075. LOC_Os04g45340.	 Other	Os04g0536500	LOC_Os04g45340.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15023	NAC90	OsSWN7, SWN7, ONAC090, ONAC90, VND6, VND4/5/6, OsVND6, OsVND4/5/6, DLN155, OsDLN155	NAC DOMAIN-CONTAINING PROTEIN 90	secondary wall NAC transcription factor 7, secondary wall-associated NAC 7, SECONDARY WALL NAC DOMAIN PROTEIN 7, NAC domain-containing protein 090, NAC domain-containing protein 90, VASCULAR- RELATED NAC-DOMAIN 6, DLN repressor 155, DLN motif protein 155	NAC DOMAIN-CONTAINING PROTEIN 90		6	JN634076. a homolog of AtVND6.	 Other	Os06g0104200	LOC_Os06g01480.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15024	MYB46	OsMYB46, OsMYB122, MYB122, Os2R_MYB96, 2R_MYB96	MYB TRANSCRIPTION FACTOR 46	MYB transcription factor 46, R2R3-MYB Transcription Factor 96	MYB TRANSCRIPTION FACTOR 46		12	JN634084. OsMYB122 in Abdullah-Zawawi et al. 2021.	 Other	Os12g0515300	LOC_Os12g33070.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0005634 - nucleus		
15025	RPA2C	RPA2c, OsRPA2c	REPLICATION PROTEIN A 2C	Replication Protein A2c	REPLICATION PROTEIN A 2C	rpa2c	6	Q5Z8L1.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os06g0693300	LOC_Os06g47830.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006260 - DNA replication, GO:0006281 - DNA repair, GO:0006310 - DNA recombination		
15026	RPA1C	RPA1c, OsRPA1c	REPLICATION PROTEIN A 1C	Replication Protein A1c	REPLICATION PROTEIN A 1C		5	Q65XV7.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0111000	LOC_Os05g02040.1				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0006310 - DNA recombination, GO:0006281 - DNA repair, GO:0003677 - DNA binding, GO:0006260 - DNA replication		
15027	SIK2	OsSIK2, YK14, SDRLK-SIK2, OsSDRLK-SIK2	STRESS INDUCED PROTEIN KINASE 2	S-Domain receptor like kinase-SIK2		sik2	7	AF230505.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os07g0186200	LOC_Os07g08860.1				GO:0010150 - leaf senescence, GO:0010042 - response to manganese ion, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0010338 - leaf formation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000207 - plant height, TO:0000249 - leaf senescence, TO:0000655 - leaf development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content	PO:0009005 - root , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
15028	FBOX130	OsFBK12, OsFbox130, Os_F0642, OsFBK12, FBK12	F-BOX PROTEIN 130	F-Box Protein 12, F-box protein 130, F-box protein containing kelch motif 12, F-box-type E3 ubiquitin ligase K12	F-BOX PROTEIN 130		3	OsFBK12 in Chen et al. 2013, Liu et al. 2022. Os_F0642 in Hua et al. 2011.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0171600	LOC_Os03g07530.1, LOC_Os03g07530.2, LOC_Os03g07530.3				GO:0005634 - nucleus	TO:0000391 - seed size, TO:0000476 - growth hormone content, TO:0002759 - grain number, TO:0000249 - leaf senescence, TO:0002661 - seed maturation, TO:0000590 - grain weight	
15029	OSK1	SKP1, OsSKP1	SKP1-LIKE GENE 1	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN, Oryza sativa SKP1-like gene 1, rice SKP1-like Protein1	SKP1-LIKE PROTEIN 1		11	the functional equivalent of ASK1 in Arabidopsis. a component of the SCF E3 ubiquitin ligase complex.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os11g0456300	LOC_Os11g26910.1				GO:0009615 - response to virus, GO:0000706 - meiotic DNA double-strand break processing, GO:0019005 - SCF ubiquitin ligase complex, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000148 - viral disease resistance	
15030	_	OsPOP5, POP5	_	Prolyl Oligopeptidase 5, PROLYL OLIGOPEPTIDASE 5			2	LOC_Os02g18850. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0290600 	LOC_Os02g18850.1				GO:0016020 - membrane, GO:0008236 - serine-type peptidase activity, GO:0006508 - proteolysis		
15031	_	OsERdj3A, TMS1	_	ER-resident J-protein 3A, THERMOSENSITIVE MALE STERILE 1			3	a co-chaperone component of the HSP70 system. LOC_Os03g18200.	 Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0293000	LOC_Os03g18200.1, LOC_Os03g18200.2				GO:0005783 - endoplasmic reticulum, GO:0005773 - vacuole, GO:0000326 - protein storage vacuole, GO:0002235 - detection of unfolded protein, GO:0042735 - protein body, GO:0009860 - pollen tube growth, GO:0009856 - pollination, GO:0034976 - response to endoplasmic reticulum stress		
15032	DIRS1		GYPSY TYPE RETROTRANSPOSON DIRS1	Gypsy /DIRS1 transposon			8		 Other						GO:0032196 - transposition		
15033	OXO1	OsOxO1, OsGLP3-3, GLP3-3, OsCDP3.6, CDP3.6	OXALATE OXIDASE 1	oxalate oxidase 1, german-like protein 3-3, cupin domain protein 3.6	OXALATE OXIDASE 1		3	Q851J8.	 Tolerance and resistance - Stress tolerance,  Seed,  Tolerance and resistance - Disease resistance	Os03g0693700	LOC_Os03g48750.1				GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009856 - pollination, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009408 - response to heat	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance	PO:0007016 - whole plant flowering stage , PO:0001170 - seed development stage , PO:0009049 - inflorescence 
15034	OXO3	OsOxO3, OsGLP3-5, GLP3-5, OsCDP3.8, CDP3.8	OXALATE OXIDASE 3	oxalate oxidase 3, german-like protein 3-5, cupin domain protein 3.8	OXALATE OXIDASE 3		3	Q851K0.  GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0693900	LOC_Os03g48770.1				GO:0050832 - defense response to fungus, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000605 - hydrogen peroxide content, TO:0000477 - panicle blast disease resistance	PO:0009010 - seed , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0005052 - plant callus 
15035	OXO4	OsOxO4, OsGLP3-6, GLP3-6, OsCDP3.9, CDP3.9	OXALATE OXIDASE 4	oxalate oxidase 4, german-like protein 3-6, cupin domain protein 3.9	OXALATE OXIDASE 4		3	Q851K1. KJ781300.  GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed,  Reproductive organ - panicle	Os03g0694000	LOC_Os03g48780.1				GO:0009738 - abscisic acid mediated signaling, GO:0042742 - defense response to bacterium, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0010229 - inflorescence development, GO:0030912 - response to deep water, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0005737 - cytoplasm, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0030145 - manganese ion binding, GO:0046688 - response to copper ion	TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000477 - panicle blast disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000286 - submergence sensitivity, TO:0000303 - cold tolerance	PO:0007073 - 2 formation of axillary shoot stage , PO:0001170 - seed development stage , PO:0009006 - shoot system , PO:0009005 - root , PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0001083 - inflorescence development stage , PO:0025034 - leaf , PO:0007014 - booting stage 
15036	_	OsARAF1	_	Arabinofuranosidase 1			7		 Biochemical character	Os07g0686900	LOC_Os07g48750.1						
15037	_	OsARAF3	_	Arabinofuranosidase 3			11	Alpha-L-arabinofuranosidase C-terminus family protein. LOC_Os11g03730. 	 Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0131900	LOC_Os11g03730.1, LOC_Os11g03730.2, LOC_Os11g03730.3				GO:0046556 - alpha-N-arabinofuranosidase activity, GO:0050832 - defense response to fungus, GO:0046373 - L-arabinose metabolic process	TO:0000074 - blast disease	
15038	_	OsARAF2	_	Arabinofuranosidase 2					 Biochemical character								
15039	_	OsARAF4	_	Arabinofuranosidase 4					 Biochemical character								
15040	_	OsARAF5	_	Arabinofuranosidase 5					 Biochemical character								
15041	_	OsBURP01, OsBURP1	_	BURP domain-containing protein 1			5	Q6I5B3.		Os05g0215000	LOC_Os05g12400.1						
15042	_	OsBURP02, OsBURP2	_	BURP domain-containing protein 2			5	Q6I5W0.	 Tolerance and resistance - Stress tolerance	Os05g0217800	LOC_Os05g12640.1, LOC_Os05g12640.2, LOC_Os05g12640.3, LOC_Os05g12640.4, LOC_Os05g12640.6						
15043	_	OsBURP04, OsBURP4	_	BURP domain-containing protein 4			2	Q0E1Z0.	 Tolerance and resistance - Stress tolerance	Os02g0288600	LOC_Os02g18690.1						
15044	BURP5	OsBURP05, OsBURP5	BURP DOMAIN-CONTAINING PROTEIN 5	BURP domain-containing protein 5	BURP DOMAIN-CONTAINING PROTEIN 5		4	Q0JEP3.	 Tolerance and resistance - Stress tolerance	Os04g0225700	LOC_Os04g14990.1				GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
15045	_	OsBURP06, OsBURP6	_	BURP domain-containing protein 6			5	Q6I5B2.	 Tolerance and resistance - Stress tolerance	Os05g0215066	LOC_Os05g12410.1						
15046	BURP7	OsBURP07, OsBURP7	BURP DOMAIN-CONTAINING PROTEIN 7	BURP domain-containing protein 7	BURP DOMAIN-CONTAINING PROTEIN 7		5	Q60E34.	 Tolerance and resistance - Stress tolerance	Os05g0217700	LOC_Os05g12630.2, LOC_Os05g12630.1				GO:0001666 - response to hypoxia	TO:0000015 - oxygen sensitivity	
15047	_	OsBURP08, OsBURP8	_	BURP domain-containing protein 8			5	Q75G46.	 Tolerance and resistance - Stress tolerance	Os05g0221900	LOC_Os05g13490.1						
15048	_	OsBURP09, OsBURP9	_	BURP domain-containing protein 9			6	Q67VD7.	 Tolerance and resistance - Stress tolerance	Os06g0240050	LOC_Os06g13240.1						
15049	_	OsBURP10	_	BURP domain-containing protein 10			6	Q5VN46.	 Tolerance and resistance - Stress tolerance	Os06g0281800	LOC_Os06g17000.1						
15050	_	OsBURP11	_	BURP domain-containing protein 11			6	Q5Z5C9.	 Tolerance and resistance - Stress tolerance	Os06g0302000	LOC_Os06g19800.1						
15051	_	OsBURP12	_	BURP domain-containing protein 12			8	Q6ZA27.	 Tolerance and resistance - Stress tolerance	Os08g0380100	LOC_Os08g29200.1						
15052	_	OsBURP14	_	BURP domain-containing protein 14			9	Q6K2M1.	 Tolerance and resistance - Stress tolerance	Os09g0329000	LOC_Os09g16010.1						
15053	_	OsBURP17	_	BURP domain-containing protein 17			11	B9G9L9.	 Tolerance and resistance - Stress tolerance	Os11g0170900	LOC_Os11g06980.1, LOC_Os11g06980.2						
15055	HRZ1	OsHRZ1, OsRING149, RING149	HAEMERYTHRIN MOTIF-CONTAINING RING- AND ZINC-FINGER PROTEIN 1	Haemerythrin motif-containing Really Interesting New Gene (RING)-and Zinc-finger protein 1, Haemerythrin motif-containing RING- and Zinc-finger protein 1, RING-type E3 ubiquitin ligase 149	HAEMERYTHRIN MOTIF-CONTAINING RING- AND ZINC-FINGER PROTEIN 1	hrz1-1	1	OsHRZ1 negatively regulates responses to Fe deficiency. a RING ubiquitin ligase. a close homolog of Arabidopsis BTS. an Arabidopsis thaliana BRUTUS (BTS) ortholog. putative iron-sensing factor. putative Fe and oxygen/redox state sensor. iron-binding ubiquitin ligase.  GO:1901967: negative regulation of cellular response to iron ion starvation. GO:1990641: response to iron ion starvation. TO:0020089: iron content trait. TO:0006049: iron concentration. TO:0020090: zinc content trait. TO:0006053: zinc concentration.	 Tolerance and resistance - Stress tolerance	Os01g0689451	LOC_Os01g49470.2, LOC_Os01g49470.1				GO:0008270 - zinc ion binding, GO:0010040 - response to iron(II) ion, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042594 - response to starvation, GO:0005506 - iron ion binding, GO:0010106 - cellular response to iron ion starvation, GO:0055072 - iron ion homeostasis	TO:0000224 - iron sensitivity	PO:0009005 - root 
15056	_	OsHORZ1	_	Haemerythrin motif-containing protein without RING- and Zn-finger 1		horz1-1	1			Os01g0861700	LOC_Os01g64250.1						
15057	CYP93G2	OsCYP93G2, OsF2H, F2H, OsCYP71S1, CYP71S1	P-450 93G2	Cytochrome P450 93G2, flavanone 2-hydroxylase	CYTOCHROME P450 93G2		6	BGIOSGA022122. OsCYP71S1 in Sahoo et al. 2023.	 Biochemical character	Os06g0102100	LOC_Os06g01250.1				GO:0051553 - flavone biosynthetic process, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009737 - response to abscisic acid stimulus, GO:0020037 - heme binding	TO:0000615 - abscisic acid sensitivity	PO:0009009 - plant embryo 
15059	CYP72A1	CYP72A1	P-450 72A1	Cytochrome P450 72A1	CYTOCHROME P450 72A1		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0371300	LOC_Os03g25500.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
15060	_	OsMaT-3	_	malonyltransferase 3			2	LOC_Os02g28340. metabolite: Tricin O-malonylhexoside.	 Biochemical character	Os02g0485000	LOC_Os02g28340.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
15061	_	OsMaT-2	_	malonyltransferase 2, flavonol 3-O-glucoside malonyltransferase			2	LOC_Os02g28170. metabolite: Tricin O-malonylhexoside.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0483500	LOC_Os02g28170.1				GO:0009408 - response to heat, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000432 - temperature response trait	
15062	_	OsMaT-1	_	malonyltransferase 1			2		 Biochemical character	Os02g0484200	LOC_Os02g28220.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
15063	CYP27	OsCYP-27	CYCLOPHILIN 27	cyclophilin 27	CYCLOPHILIN 27		10	OsCYP-27 in Trivedi et al. 2013. LOC_Os10g15370.	 Biochemical character		LOC_Os10g15370						
15064	CYP20	OsCYP-20	CYCLOPHILIN 20	cyclophilin 20	CYCLOPHILIN 20		8	OsCYP-20 in Trivedi et al. 2013. LOC_Os08g05050.	 Biochemical character		LOC_Os08g05050						
15065	CYP7	OsCYP-7	CYCLOPHILIN 7	cyclophilin 7	CYCLOPHILIN 7		2	OsCYP-7 in Trivedi et al. 2013. Sm gene, Sm family protein in Chen and Cao 2014.	 Biochemical character	Os02g0510100	LOC_Os02g30624.1, LOC_Os02g30624.2						
15067	_	OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA	_	adaptor protein NINJA 1, adaptor protein NINJA 2, NOVEL INTERACTOR OF JAZ 1, NOVEL INTERACTOR OF JAZ 2			5	Q6AT41. GO:1900056: negative regulation of leaf senescence. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0558800	LOC_Os05g48500.3, LOC_Os05g48500.2, LOC_Os05g48500.1				GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0009607 - response to biotic stimulus, GO:0009628 - response to abiotic stimulus, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
15068	_	OsSkp15	_	Oryza sativa Skp1 homolog 15				a component of the SCF complex. a rice ortholog of Arabidopsis Skp1 (ASK1). GID2 interacted with OsSkp15.									
15069	TIFY11E	OsJAZ 13, OsJAZ13, JAZ13, OsTIFY11e, OsJAZ13a, OsJAZ13b, OsJAZ13c, OsJAZ13d	TIFY GENE 11E	Jasmonate ZIM-domain protein 13	TIFY DOMAIN PROTEIN 11E		10	OsJAZ 13 in Yamada et al. 2012, Kashihara et al. 2019, Gao et al. 2022, Sun et al. 2022, Ma et al. 2022. Q7XEZ6. GO:1903507: negative regulation of nucleic acid-templates transcription. GO:2000022: regulation of jasmonic acid mediated signaling pathway. a candidate gene for qHNA10 (QTL for N accumulation under high N conditions on chromosome 10). GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Vegetative organ - Root,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0391400	LOC_Os10g25230.1				GO:0005737 - cytoplasm, GO:0003714 - transcription corepressor activity, GO:0031347 - regulation of defense response, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium, GO:0009651 - response to salt stress, GO:0009873 - ethylene mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0042594 - response to starvation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009611 - response to wounding, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0034052 - positive regulation of plant-type hypersensitive response, GO:0040008 - regulation of growth, GO:0009409 - response to cold, GO:0009723 - response to ethylene stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000137 - days to heading, TO:0002736 - flower number, TO:0000576 - stem length, TO:0000074 - blast disease, TO:0000011 - nitrogen sensitivity, TO:0000227 - root length, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000063 - mimic response, TO:0006001 - salt tolerance	
15070	TIFY11F	OsJAZ 14, OsJAZ14, JAZ14, OsTIFY11f	TIFY GENE 11F	Jasmonate ZIM-domain protein 14	TIFY DOMAIN PROTEIN 11F		10	OsJAZ 14 in Yamada et al. 2012. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0391801	LOC_Os10g25250.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0050832 - defense response to fungus	TO:0000418 - bakanae disease resistance	
15071	TIFY11G	OsJAZ 15, OsJAZ15, OsTIFY11g	TIFY GENE 11G	Jasmonate ZIM-domain protein 15	TIFY DOMAIN PROTEIN 11G		3	OsJAZ 15 in Yamada et al. 2012. 	 Tolerance and resistance - Stress tolerance	Os03g0396500	LOC_Os03g27900.1						
15072	TIFY5	OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188, OsJAZ5, JAZ5	TIFY GENE 5	Jasmonate ZIM-domain protein 2	TIFY DOMAIN PROTEIN 5		7	Q69NY7. OsJAZ2 in Yamada et al. 2012, He et al. 2023. OsJAZ5 in Lu et al. 2023. a mature anther-preferentially expressed gene. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0153000	LOC_Os07g05830.1				GO:0016036 - cellular response to phosphate starvation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0031347 - regulation of defense response, GO:0009611 - response to wounding, GO:0005634 - nucleus, GO:0009413 - response to flooding, GO:0042594 - response to starvation	TO:0000524 - submergence tolerance, TO:0000102 - phosphorus sensitivity	PO:0007057 - 0 seed germination stage , PO:0009066 - anther 
15075	_	OsSkp1	_	Oryza sativa Skp1 homolog 1													
15076	_	OsSkp2	_	Oryza sativa Skp1 homolog 2				GID2 interacted with OsSkp2									
15077	_	OsSkp3	_	Oryza sativa Skp1 homolog 3													
15078	_	OsSkp4	_	Oryza sativa Skp1 homolog 4													
15079	_	OsSkp5	_	Oryza sativa Skp1 homolog 5				GID2 did not interact with OsSkp5 in a yeast two-hybrid assay.									
15080	_	OsSkp6	_	Oryza sativa Skp1 homolog 6													
15081	_	OsSkp7	_	Oryza sativa Skp1 homolog 7													
15082	_	OsSkp8	_	Oryza sativa Skp1 homolog 8													
15083	_	OsSkp9	_	Oryza sativa Skp1 homolog 9													
15084	_	OsSkp10	_	Oryza sativa Skp1 homolog 10													
15085	_	OsSkp11	_	Oryza sativa Skp1 homolog 11													
15086	_	OsSkp12	_	Oryza sativa Skp1 homolog 12													
15087	_	OsSkp13	_	Oryza sativa Skp1 homolog 13													
15088	_	OsSkp14	_	Oryza sativa Skp1 homolog 14													
15089	_	OsSAP	_	senescence-associated-protein				AB734097. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation	TO:0001016 - relative chlorophyll content, TO:0000516 - relative root length, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance	
15090	STN8	OsSTN8	STATE TRANSITION 8	STN8 kinase	STATE TRANSITION 8	osstn8, stn8	5	a predicted target gene of osa-miR818d.	 Tolerance and resistance - Stress tolerance	Os05g0480000	LOC_Os05g40180.1				GO:0004672 - protein kinase activity, GO:0042549 - photosystem II stabilization, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0009579 - thylakoid, GO:0009644 - response to high light intensity, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance, TO:0000075 - light sensitivity	
15091	STN7	OsSTN7	STATE TRANSITION 7	STN7 kinase	STATE TRANSITION 7	stn7	5	targeted by osa-miR444 (Qin et al. 2017).	 Tolerance and resistance - Stress tolerance	Os05g0549100	LOC_Os05g47560.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042651 - thylakoid membrane, GO:0042548 - regulation of photosynthesis, light reaction, GO:0009643 - photosynthetic acclimation, GO:0009507 - chloroplast, GO:0007623 - circadian rhythm	TO:0000075 - light sensitivity	
15092	_	p-SINE1-r1, p-SINE1-r1*	_	transposon p-SINE1-r1				D10677 (Oryza glaberrima).	 Other						GO:0032196 - transposition		
15093	_	p-SINE1-r2	_	transposon p-SINE1-r2					 Other						GO:0032196 - transposition		
15094	_	p-SINE1-r3	_	transposon p-SINE1-r3				D10672.	 Other						GO:0032196 - transposition		
15095	_	p-SINE1-r4	_	transposon p-SINE1-r4				D10673. D14534 (O. longistaminata), D14535 (O. rufipogon).	 Other						GO:0032196 - transposition		
15096	_	p-SINE1-r5	_	transposon p-SINE1-r5				D10674.	 Other						GO:0032196 - transposition		
15097	_	p-SINE1-r6	_	transposon p-SINE1-r6				D10675.	 Other						GO:0032196 - transposition		
15098	_	p-SINE1-r7	_	transposon p-SINE1-r7				D10676.	 Other						GO:0032196 - transposition		
15099	_	p-SINE1-r21	_	transposon p-SINE1-r21, retroposon p-SINE1-r21				D85045.	 Other						GO:0032196 - transposition		
15100	_	p-SINE1-r22	_	transposon p-SINE1-r22, retroposon p-SINE1-r22				D85046.	 Other						GO:0032196 - transposition		
15101	_	p-SINE1-r23	_	transposon p-SINE1-r23, retroposon p-SINE1-r23				D85047.	 Other						GO:0032196 - transposition		
15102	_	p-SINE1-r24	_	transposon p-SINE1-r24, retroposon p-SINE1-r24				D85048.	 Other						GO:0032196 - transposition		
15103	_	p-SINE1-r25	_	transposon p-SINE1-r25, retroposon p-SINE1-r25				D85049.	 Other						GO:0032196 - transposition		
15104	_	p-SINE1-r26	_	transposon p-SINE1-r26, retroposon p-SINE1-r26				D85050.	 Other						GO:0032196 - transposition		
15105	_	p-SINE1-r27	_	transposon p-SINE1-r27, retroposon p-SINE1-r27				D85051.	 Other						GO:0032196 - transposition		
15106	_	p-SINE1-r28	_	transposon p-SINE1-r28, retroposon p-SINE1-r28				D85052.	 Other						GO:0032196 - transposition		
15107	_	p-SINE1-r29	_	transposon p-SINE1-r29, retroposon p-SINE1-r29				D85053.	 Other						GO:0032196 - transposition		
15108	_	p-SINE1-r30	_	transposon p-SINE1-r30, retroposon p-SINE1-r30				D85054.	 Other						GO:0032196 - transposition		
15109	_	p-SINE1-r31	_	transposon p-SINE1-r31, retroposon p-SINE1-r31				D85055.	 Other						GO:0032196 - transposition		
15110	_	p-SINE1-r32	_	transposon p-SINE1-r32, retroposon p-SINE1-r32				D85056.	 Other						GO:0032196 - transposition		
15111	_	p-SINE1-r33	_	transposon p-SINE1-r33, retroposon p-SINE1-r33				D85057.	 Other						GO:0032196 - transposition		
15112	_	p-SINE1-r34	_	transposon p-SINE1-r34, retroposon p-SINE1-r34				D85058.	 Other						GO:0032196 - transposition		
15113	_	p-SINE1-r35	_	transposon p-SINE1-r35, retroposon p-SINE1-r35				D85059.	 Other						GO:0032196 - transposition		
15114	_	p-SINE1-r36	_	transposon p-SINE1-r36, retroposon p-SINE1-r36				D85060.	 Other						GO:0032196 - transposition		
15115	_	p-SINE1-r38	_	transposon p-SINE1-r38, retroposon p-SINE1-r38				D85068.	 Other						GO:0032196 - transposition		
15116	_	p-SINE1-r100	_	transposon p-SINE1-r100, retroposon p-SINE1-r100				D85061.	 Other						GO:0032196 - transposition		
15117	_	p-SINE1-r101	_	transposon p-SINE1-r101, retroposon p-SINE1-r101				D85062.	 Other						GO:0032196 - transposition		
15118	_	p-SINE1-r102	_	transposon p-SINE1-r102, retroposon p-SINE1-r102				D85063.	 Other						GO:0032196 - transposition		
15119	_	p-SINE1-r103	_	transposon p-SINE1-r103, retroposon p-SINE1-r103				D85064.	 Other						GO:0032196 - transposition		
15120	_	p-SINE1-r104	_	transposon p-SINE1-r104, retroposon p-SINE1-r104				D85065.	 Other						GO:0032196 - transposition		
15121	_	p-SINE1-r105	_	transposon p-SINE1-r105, retroposon p-SINE1-r105				D85066.	 Other						GO:0032196 - transposition		
15122	_	p-SINE1-r106	_	transposon p-SINE1-r106, retroposon p-SINE1-r106				D85067.	 Other						GO:0032196 - transposition		
15123	_	p-SINE1-r107	_	transposon p-SINE1-r107, retroposon p-SINE1-r107					 Other						GO:0032196 - transposition		
15124	_	p-SINE1-r108	_	transposon p-SINE1-r108, retroposon p-SINE1-r108					 Other						GO:0032196 - transposition		
15125	_	p-SINE1-r109	_	transposon p-SINE1-r109, retroposon p-SINE1-r109					 Other						GO:0032196 - transposition		
15126	_	p-SINE1-r111	_	transposon p-SINE1-r111, retroposon p-SINE1-r111					 Other						GO:0032196 - transposition		
15127	_	p-SINE1-r112	_	transposon p-SINE1-r112, retroposon p-SINE1-r112					 Other						GO:0032196 - transposition		
15128	_	OsSPL, OsSPL1	_	Sphingosine-1-phosphate lyase, sphingosine-1-phosphate lyase 1			1	AY972084. Q52RG7. LOC_Os01g01080.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0100900	LOC_Os01g01080.1, LOC_Os01g01080.2, LOC_Os01g01080.3				GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0016831 - carboxy-lyase activity, GO:0006635 - fatty acid beta-oxidation, GO:0030149 - sphingolipid catabolic process, GO:0006665 - sphingolipid metabolic process, GO:0006915 - apoptosis, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009407 - toxin catabolic process, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0008117 - sphinganine-1-phosphate aldolase activity, GO:0016021 - integral to membrane, GO:0019752 - carboxylic acid metabolic process, GO:0030170 - pyridoxal phosphate binding, GO:0080129 - proteasome core complex assembly, GO:0051788 - response to misfolded protein, GO:0005789 - endoplasmic reticulum membrane	TO:0000074 - blast disease, TO:0000401 - plant growth hormone sensitivity	
15129	6PGDH1	Os6PGDH1, Os6PGDH, 6PGDH	6-PHOSPHOGLUCONATE DEHYDROGENASE 1	6-phosphogluconate dehydrogenase 1, cytosolic 6PGDH, Cytoplasmic 6-phosphogluconate dehydrogenase 1	6-PHOSPHOGLUCONATE DEHYDROGENASE 1	Osg6pgh1-1, Osg6pgh1-2	6	AF486280. Q9LI00. GO:0071588: hydrogen peroxide mediated signaling pathway. TO:0001069: cooking quality trait. GO:1901000: regulation of response to salt stress. GO:2000904: regulation of starch metabolic process.	 Seed - Physiological traits - Taste,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Insect resistance,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0111500	LOC_Os06g02144.1, LOC_Os06g02144.2				GO:0009611 - response to wounding, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0080027 - response to herbivore, GO:0009753 - response to jasmonic acid stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0002213 - defense response to insect, GO:0050661 - NADP or NADPH binding, GO:0019521 - D-gluconate metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006098 - pentose-phosphate shunt, GO:0051246 - regulation of protein metabolic process, GO:0005737 - cytoplasm, GO:0005829 - cytosol	TO:0000266 - chalky endosperm, TO:0000207 - plant height, TO:0000227 - root length, TO:0000462 - gelatinization temperature, TO:0000456 - spikelet number, TO:0000172 - jasmonic acid sensitivity, TO:0000455 - seed set percent, TO:0000424 - brown planthopper resistance, TO:0000605 - hydrogen peroxide content, TO:0002668 - jasmonic acid content, TO:0000162 - seed quality, TO:0002653 - endosperm storage protein content, TO:0000696 - starch content, TO:0000196 - amylose content, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009005 - root , PO:0020104 - leaf sheath 
15130	6PGDH2	Os6PGDH2	6-PHOSPHOGLUCONATE DEHYDROGENASE 2	6-phosphogluconate dehydrogenase 2, plastidic 6PGDH	6-PHOSPHOGLUCONATE DEHYDROGENASE 2		11	AY278362. Q2R480. D15195.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0484500	LOC_Os11g29400.1				GO:0009737 - response to abscisic acid stimulus, GO:0019521 - D-gluconate metabolic process, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050661 - NADP or NADPH binding, GO:0006098 - pentose-phosphate shunt, GO:0009409 - response to cold, GO:0009507 - chloroplast		
15131	LS1	OsSRZ1, SRZ1, OsLS1	LEAF SENESCENCE 1	stress repressive zinc finger protein 1, Leaf Senescence 1	STRESS REPRESSIVE ZINC FINGER PROTEIN 1	ls1, ls1-1, ls1-2	2	AY219846. APC regulator. APC regulatory subunit. a C2H2 Zinc Finger Protein. GO:1900055: regulation of leaf senescence. GO:2000024: regulation of leaf development.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os02g0203700 	LOC_Os02g10920.1, LOC_Os02g10920.2, LOC_Os02g10920.3, LOC_Os02g10920.4, LOC_Os02g10920.5, LOC_Os02g10920.6				GO:0030104 - water homeostasis, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0010150 - leaf senescence, GO:0009646 - response to absence of light, GO:0043067 - regulation of programmed cell death, GO:0048366 - leaf development, GO:0008270 - zinc ion binding, GO:0006974 - response to DNA damage stimulus	TO:0000496 - carotenoid content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0000655 - leaf development trait, TO:0000460 - light intensity sensitivity, TO:0000249 - leaf senescence, TO:0000207 - plant height, TO:0002662 - leaf rolling tolerance, TO:0002681 - leaf curling, TO:0000131 - leaf water potential, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000370 - leaf width, TO:0000135 - leaf length	PO:0001054 - 4 leaf senescence stage , PO:0001050 - leaf development stage 
15132	LMGC1	SRZ3, OsSRZ3, OsLMGC1, RZF1, OsRZF1	LOW-MAGNESIUM CONTENT 1	stress repressive zinc finger protein 3, RanBP2-TYPE ZINC FINGER1, low-magnesium content 1	STRESS REPRESSIVE ZINC FINGER PROTEIN 3	lmgc1	1	TO:0006044: magnesium content. TO:1000063: shoot system magnesium content. TO:0006060: leaf chlorosis.	 Tolerance and resistance - Stress tolerance	Os01g0555100	LOC_Os01g37460.1				GO:0008270 - zinc ion binding, GO:0010350 - cellular response to magnesium starvation, GO:0015693 - magnesium ion transport, GO:0032026 - response to magnesium ion, GO:0042594 - response to starvation, GO:0010233 - phloem transport, GO:0005634 - nucleus, GO:0010960 - magnesium ion homeostasis	TO:0000010 - magnesium sensitivity	
15133	STL1	SRZ4, OsSRZ4, OsSTL1	SALT TOLERANCE LEVEL 1	stress repressive zinc finger protein 4, salt tolerance level 1	STRESS REPRESSIVE ZINC FINGER PROTEIN 4		4	a homolog of salt tolerance gene SRP1 (Stress associated RNA-binding protein 1) in Arabidopsis.	 Tolerance and resistance - Stress tolerance	Os04g0110600	LOC_Os04g02000.1, LOC_Os04g02000.2				GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
15136	_	OsPRA1	_	Prenylated rab acceptor			5	AY789531. a rice homolog of PRA1. a G-proteinsignaling component.	 Tolerance and resistance - Stress tolerance	Os05g0474400	LOC_Os05g39670.1				GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
15137	PRO10.3	Prol-02, pro10.3, OsPRO10.3	10 KDA PROLAMIN 3	10 kDa prolamin 3	10 KDA PROLAMIN 3		3	10 kDa prolamin. AK242216, Os03g0776250, LOC_Os03g55740 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os03g0766350 	LOC_Os03g55740.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15138	PRO13B.5	Prol-03, pro13b.5, OsPRO13B.5	13 KDA PROLAMIN B.5	13 kDa prolamin B.5	13 KDA PROLAMIN B.5		5	13 kDa prolamin. Os05g0328333, LOC_Os05g26240 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0328333 	LOC_Os05g26240.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15139	PRO13B.8	Prol-04, pro13b.8, OsPRO13B.8, PROLM4	13 KDA PROLAMIN B.8	Prolamin 4, 13 kDa prolamin B.8	13 KDA PROLAMIN B.8		5	EF122439. PROLM4 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os05g0328800 	LOC_Os05g26350.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15140	PRO13B.9	Prol-05, pro13b.9, OsPRO13B.9	13 KDA PROLAMIN B.9	13 kDa prolamin B.9	13 KDA PROLAMIN B.9		5		 Seed - Physiological traits - Storage substances	Os05g0328901 	LOC_Os05g26368.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15142	_	Prol-09, Prol-27	_				5	prolamin. EF122441, EF122442. 	 Seed - Physiological traits - Storage substances	Os05g0329400	LOC_Os05g26440.1						
15143	PRO13B.16	Prol-10, pro13b.16, OsPRO13B.16, PROLM12	13 KDA PROLAMIN B.16	Prolamin 12, 13 kDa prolamin B.16	13 KDA PROLAMIN B.16		5	Os05g0329200, LOC_Os05g26480 (Yoon et al. 2012). PROLM12 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os05g0329200 	LOC_Os05g26480.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15144	PRO13B.17	Prol-11, pro13b.17, OsPRO13B.17, PROLM13	13 KDA PROLAMIN B.17	Prolamin 13, 13 kDa prolamin B.17	13 KDA PROLAMIN B.17		5		 Seed - Physiological traits - Storage substances	Os05g0330150 	LOC_Os05g26490.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15145	PRO13B.18	Prol-12, pro13b.18, OsPRO13B.18	13 KDA PROLAMIN B.18	13 kDa prolamin B.18	13 KDA PROLAMIN B.18		5	FJ940201, Os05g0330600, LOC_Os05g26620 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0330600  	LOC_Os05g26620.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15147	_	Prol-13	_				5	prolamin. EF122443, Os05g0331550, LOC_Os05g26720(=Os05g0331532) (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0331550							
15148	PRO13B.21	Prol-14, pro13b.21, OsPRO13B.21, PROLM17	13 KDA PROLAMIN B.21	13 kDa prolamin B.21	13 KDA PROLAMIN B.21		5	AK242595, Os05g0331800, LOC_Os05g26750 (Yoon et al. 2012). PROLM17 in Huang et al. 2016.	 Seed - Physiological traits - Storage substances	Os05g0331800 	LOC_Os05g26750.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15149	PRO13B.22	Prol-15, pro13b.22, OsPRO13B.22	13 KDA PROLAMIN B.22	13 kDa prolamin B.22	13 KDA PROLAMIN B.22		5	EF122444, Os05g0332000, LOC_Os05g26770 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0332000 	LOC_Os05g26770.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15150	PRO16.1	Prol-16, OsEnS-87, EnS-87, pro16.1, OsPRO16.1	16 KDA PROLAMIN 1	endosperm-specific gene 87, 16 kDa prolamin 1	16 KDA PROLAMIN 1		6		 Seed - Physiological traits - Storage substances	Os06g0507100	LOC_Os06g31060.1, LOC_Os06g31060.2				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity		PO:0009089 - endosperm 
15151	PRO16.2	Prol-17, OsEnS-88, pro16.2, OsPRO16.2, PROLM24	16 KDA PROLAMIN 2	16 kDa prolamin, cystein-rich 16.6-kDa prolamin, endosperm-specific gene 88, 16 kDa prolamin 2	16 KDA PROLAMIN 2		6	EF122449. FJ940202. AY427574 (promoter). PROLM24 in Huang et al. 2016.	 Seed - Physiological traits - Storage substances	Os06g0507200 	LOC_Os06g31070.1				GO:0045735 - nutrient reservoir activity, GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body	TO:0002661 - seed maturation	PO:0009089 - endosperm 
15152	PRO13B.1	Prol-20, pro13b.1, OsPRO13B.1, PROLM19	13 KDA PROLAMIN B.1	Prolamin 19, 13 kDa prolamin B.1	13 KDA PROLAMIN B.1		7	PROLM19 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os07g0219250 	LOC_Os07g11900.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15153	PRO10.4	Prol-23, pro10.4, SSA5, OsPRO10.4	10 KDA PROLAMIN 4	2S albumin seed storage family protein, 10 kDa prolamin 4	10 KDA PROLAMIN 4		11	EF122448, LOC_Os11g33000 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os11g0535525 	LOC_Os11g33000.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15154	PRO13A.3	Prol-24, pro13a.3, OsPRO13A.3	13 KDA PROLAMIN A.3	13 kDa prolamin A.3	13 KDA PROLAMIN A.3		12	AK242177, Os12g0269101, LOC_Os12g16880 (Yoon et al. 2012). a seed storage protein.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os12g0269100 	LOC_Os12g16880.1				GO:0008233 - peptidase activity, GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum, GO:0045735 - nutrient reservoir activity, GO:0006508 - proteolysis		PO:0009089 - endosperm 
15155	PRO13A.4	Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, OsPRO13A.4, PROLM28	13 KDA PROLAMIN A.4	Prolamin 28, 13 kDa prolamin A.4	13 KDA PROLAMIN A.4		12	13 kDa prolamin. EF122451, EF122452, EF122453, FJ940200, Os12g0269200, LOC_Os12g16890 (Yoon et al. 2012). PROLM28 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os12g0269200 	LOC_Os12g16890.1				GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
15156	PRO13A.6	Prol-26, pro13a.6, OsPRO13A.6	13 KDA PROLAMIN A.6	13 kDa prolamin A.6	13 KDA PROLAMIN A.6		12	EF122454, Os12g0269600, LOC_Os12g17030 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os12g0269700	LOC_Os12g17030.1				GO:0045735 - nutrient reservoir activity, GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
15158	DFR3	OS-DFR3, OsDFR3, OsDFR7, DFR7	DIHYDROFLAVONOL 4-REDUCTASE 3	dihydroflavonol 4-reductase 3	DIHYDROFLAVONOL 4-REDUCTASE 3			NM_188999 (Obsolete) in Yau et al. 2005. OsDFR7 in Wang et al. 2022.	 Biochemical character	Os08g0515900	LOC_Os08g40440.1				GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0080110 - sporopollenin biosynthetic process		PO:0009049 - inflorescence 
15159	_	OS-CAD	_	cinnamoyl alcohol dehydrogenase			3	NM_193168 (obsolete).	 Biochemical character	Os03g0581100	LOC_Os03g38440.1						
15160	CCR20	OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14	CINNAMOYL-COA REDUCTASE 20	cinnamoyl-CoA reductase, cinnamoyl CoA reductase 20	CINNAMOYL-COA REDUCTASE 20		8	AP004703. CCR20 in Koshiba et al. 2013, Park et al. 2017. OsCCR14 in Borah & Khurana 2018. GO:1901698: response to nitrogen compound. Orthologous to Arabidopsis CCR1 (AtCCR1/IRX4).	 Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os08g0441500 	LOC_Os08g34280.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009807 - lignan biosynthetic process, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0009809 - lignin biosynthetic process, GO:0050662 - coenzyme binding, GO:0009834 - secondary cell wall biogenesis, GO:0003824 - catalytic activity, GO:0044237 - cellular metabolic process	TO:0000160 - UV light sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000074 - blast disease, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000276 - drought tolerance, TO:0000051 - stem strength, TO:0000175 - bacterial blight disease resistance	
15162	GW5	qSW5/GW5, GSE5, OsGSE5, OsGW5, qSW5	GRAIN WIDTH 5	GRAIN SIZE ON CHROMOSOME 5, seed width (QTL)-5		gse5-cr	5	AB433345(Kasalath), Map position (5.35Mb). a Plasma Membrane-Associated Protein with IQ Domains. the Candidate Gene of qDEC5. PRJNA751381.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Character as QTL - Grain quality	Os05g0187500	LOC_Os05g09520.1				GO:0042127 - regulation of cell proliferation, GO:0010229 - inflorescence development, GO:0009408 - response to heat, GO:0005886 - plasma membrane, GO:0051246 - regulation of protein metabolic process, GO:0006109 - regulation of carbohydrate metabolic process, GO:0006040 - amino sugar metabolic process, GO:0009225 - nucleotide-sugar metabolic process, GO:0048316 - seed development, GO:0019722 - calcium-mediated signaling	TO:0000402 - grain width, TO:0000621 - inflorescence development trait, TO:0000397 - grain size, TO:0002730 - grain shape, TO:0000371 - yield trait, TO:0000162 - seed quality, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000259 - heat tolerance, TO:0000391 - seed size, TO:0000266 - chalky endosperm, TO:0000432 - temperature response trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
15163	HGW	OsHGW	HEADING AND GRAIN WEIGHT	heading and grain weight, heading date- and grain weight-related protein	UBA DOMAIN PROTEIN	hgw	6	Ubiquitin-associated (UBA) domain protein. GO:2000028: regulation of photoperiodism, flowering.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os06g0160400	LOC_Os06g06530.1				GO:0050832 - defense response to fungus, GO:0048573 - photoperiodism, flowering	TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000137 - days to heading, TO:0000129 - false smut disease resistance	
15164	SRS3	OsSRS3, SAR1, OsSAR1, KIN13A, OsKIN13A	SMALL AND ROUND SEED 3	small and round seed 3, small and round grains 1, SRS3/OsKINESIN-13A, OsKinesin-13A, OsKinesin13A, Kinesin13A, Kinesin 13A, Kinesin-13A	KINESIN	srs3, sar1	5	AB531488. B9FMJ3. kinesin 13 protein. 	 Character as QTL - Yield and productivity	Os05g0154700	LOC_Os05g06280.3, LOC_Os05g06280.2, LOC_Os05g06280.1				GO:0005874 - microtubule, GO:0005524 - ATP binding, GO:0010215 - cellulose microfibril organization, GO:0043622 - cortical microtubule organization, GO:0031982 - vesicle, GO:0005795 - Golgi stack, GO:0005871 - kinesin complex, GO:0003777 - microtubule motor activity, GO:0005886 - plasma membrane, GO:0007018 - microtubule-based movement, GO:0008152 - metabolic process, GO:0009826 - unidimensional cell growth, GO:0016192 - vesicle-mediated transport, GO:0010090 - trichome morphogenesis	TO:0000397 - grain size, TO:0000207 - plant height, TO:0000145 - internode length, TO:0020033 - glume length, TO:0000734 - grain length	
15165	_	OS-PYDK, Ospdhk, PDHK, PDK, OsPDK, Ospdhk2, pdhk2 OsHRK1, HRK1	_	pyruvate dehydrogenase kinase, pyruvate dehydrogenase kinase 2, OsHIRP1-regluated Kinase1			7	AY026039. AY785812, AY785813 (indica). BF889446. Ospdhk2 in japonica and Ospdhk in indica (Mukherjee et al. 2012).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date	Os07g0637300	LOC_Os07g44330.3, LOC_Os07g44330.2, LOC_Os07g44330.1				GO:0050832 - defense response to fungus, GO:0046777 - protein amino acid autophosphorylation, GO:0009927 - histidine phosphotransfer kinase activity, GO:0007165 - signal transduction, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0005829 - cytosol	TO:0002616 - flowering time, TO:0002759 - grain number, TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000723 - microsporocyte development trait, TO:0006001 - salt tolerance	
15166	NP1 	OS-ACE, OsNP1, OsTMS18, TMS18	NO POLLEN 1 	No Pollen 1, Thermosensitive genic male sterility 18		osnp1, osnp1-1, osnp1-2, osnp1-3, np1, np1-1, np1-2, np1-3, np1-4, ostms18	10	AF251031. glucose-methanol-choline oxidoreductase. an HTH1-related protein. TO:1000022: anther morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0524500	LOC_Os10g38050.1				GO:0009556 - microsporogenesis, GO:0009266 - response to temperature stimulus, GO:0009555 - pollen development, GO:0010208 - pollen wall assembly, GO:0006066 - alcohol metabolic process, GO:0008812 - choline dehydrogenase activity, GO:0016829 - lyase activity, GO:0050660 - FAD binding, GO:0080110 - sporopollenin biosynthetic process, GO:0048653 - anther development, GO:0010584 - pollen exine formation, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors	TO:0000432 - temperature response trait, TO:0000437 - male sterility, TO:0000218 - pollen abortion type, TO:0000723 - microsporocyte development trait, TO:0000245 - pollen free, TO:0000187 - anther color, TO:0000421 - pollen fertility, TO:0000067 - genic male sterility-thermo sensitive, TO:0000531 - anther length, TO:0000215 - stamen anatomy and morphology trait	PO:0025543 - tapetum cell , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0009071 - anther wall tapetum , PO:0009066 - anther 
15167	_	OS-RNAH, OsRH29	_	RNA helicase, RNA helicase 29			8	AY644647. A2YV85, A3BT52. DEAD-box RNA helicase protein. LOC_Os08g32090.	 Biochemical character	Os08g0416100	LOC_Os08g32090.1				GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0006200 - ATP catabolic process, GO:0003723 - RNA binding	TO:0000723 - microsporocyte development trait	
15168	_	OS-QR	_	quinone reductase			3	AY644646.	 Biochemical character	Os03g0748500	LOC_Os03g53730.1				GO:0055114 - oxidation reduction, GO:0010181 - FMN binding, GO:0016491 - oxidoreductase activity, GO:0045892 - negative regulation of transcription, DNA-dependent	TO:0000723 - microsporocyte development trait	
15169	_	OS-NUC	_	RNA-binding nucleolin			8	AY644645. Q6Z1C0.		Os08g0192900	LOC_Os08g09350.1				GO:0000166 - nucleotide binding, GO:0006364 - rRNA processing, GO:0003723 - RNA binding, GO:0005730 - nucleolus	TO:0000723 - microsporocyte development trait	
15170	_	OS-RP2, LTPL2, OsLTPL2	_	LTP (lipid transfer protein) family protein LTPL2			7	AY644643.		Os07g0655800	LOC_Os07g46210.1					TO:0000723 - microsporocyte development trait	
15171	FAD2-1	OsFAD2, OsFAD2-1, OsaFAD2-1	FATTY ACID DESATURASE 2-1	fatty acid desaturase 2, microsomal delta-12 fatty acid desaturase, microsomal Delta12-fatty acid desaturase 2-1, fatty acid desaturase 2-1, fatty acid desaturase DES2	FATTY ACID DESATURASE 2-1		2	FJ768953.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm,  Biochemical character,  Seed - Physiological traits - Storage substances	Os02g0716500 	LOC_Os02g48560.1, LOC_Os02g48560.2, LOC_Os02g48560.6, LOC_Os02g48560.5, LOC_Os02g48560.4, LOC_Os02g48560.3				GO:0006629 - lipid metabolic process, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	TO:0005002 - oleic acid content, TO:0000303 - cold tolerance, TO:0000696 - starch content, TO:0000598 - protein content, TO:0000462 - gelatinization temperature, TO:0000281 - metabolite content related trait, TO:0005001 - linoleic acid content	
15172	SPIP	Spip	LTR RETROTRANSPOSON SPIP	non-autonomous LTR retrotransposon Spip, Spip LTR retrotransposon				AY355292.	 Other						GO:0032196 - transposition		
15173	SQUIQ	Squiq	LTR RETROTRANSPOSON SQUIQ	non-autonomous LTR retrotransposon Squiq, Squiq LTR retrotransposon				AY355293.	 Other						GO:0032196 - transposition		
15174	_		_					Lipid-Transfer Protein. AF017358.							GO:0008289 - lipid binding, GO:0006869 - lipid transport		
15175	_	YR1, YR7, YR11, YR20, YR22, YR24	_				5	AF220728, AF220733, AF220736, AF220742, AF220744, AF220746. NBS-LRR-like protein. AF392812, AF392814, AF392817, AF392847, AF392848, AF392849, AF392851, AF392859, AF392860, AF392867.	 Tolerance and resistance - Disease resistance	Os05g0492200	LOC_Os05g41290.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15176	_	YR2, YR6, YR9, YR10, YR21, YR23	_				11	AF220729, AF220732, AF220734, AF220735, AF220743, AF220745. NBS-LRR-like protein. AF392806, AF392818, AF392822, AF392824, AF392825, AF392829, AF392832, AF392835, AF392839, AF392841, AF392846, AF392850, AF392862, AF392863, AF392864, AF392866, AF392868.	 Tolerance and resistance - Disease resistance	Os11g0673600	LOC_Os11g44960.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15177	_	YR5	_				11	AF220731. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os11g0226800	LOC_Os11g11950.1				GO:0043531 - ADP binding		
15178	_	YR14, YR18, YR26	_				8	AF220738, AF220740, AF220747. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os08g0296600	LOC_Os08g19980.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
15179	_	YR16, YR29, rNBS42	_	NBS-LRR protein rNBS42			2	LOC_Os02g02670. AF220739, AF220749. AF516892. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os02g0118900	LOC_Os02g02670.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15180	_	YR12	_				4	AF220737. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
15181	_	YR19	_				4	AF220741. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
15182	_	YR36	_				8	AF224493. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance	Os08g0296700	LOC_Os08g20000.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15183	_	YR35	_				3	AF227001. NBS-LRR-like protein.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding		
15184	_	YR48	_				5	AF227003. NBS-LRR-like protein. AF392807, AF392826, AF392827, AF392828, AF392830, AF392843.	 Tolerance and resistance - Disease resistance	Os05g0492600	LOC_Os05g41310.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15186	DRUS2	YK1, OsCrRLK1L5, CrRLK1L5, OsDRUS2, OsMRLK3, MRLK3, FLR2, OsFLR2	DWARF AND RUNTISH SPIKELET2	Catharanthus roseus receptor-like kinase1-like kinase 5, DWARF AND RUNTISH SPIKELET 2, malectin/malectin-like receptor-like kinase 3, FERONIA-like receptor 2	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 15	drus2, flr2	1	AF230501. rice ortholog of Arabidopsis thaliana FERONIA. a receptor-like protein kinase FERONIA (FER). TO:0000862: floral organ anatomy and morphology trait. PO:0030123: panicle inflorescence. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000280: regulation of root development. TO:0020103: adventitious root length.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0769700	LOC_Os01g56330.1				GO:0006970 - response to osmotic stress, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0043610 - regulation of carbohydrate utilization, GO:0043864 - indoleacetamide hydrolase activity, GO:0009734 - auxin mediated signaling pathway, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0048653 - anther development, GO:0019252 - starch biosynthetic process, GO:0010229 - inflorescence development, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000586 - seminal root length, TO:0000366 - reproductive growth time, TO:0000207 - plant height, TO:0001034 - relative plant height, TO:0000531 - anther length, TO:0000187 - anther color, TO:0000040 - panicle length, TO:0000547 - primary branch number, TO:0000303 - cold tolerance, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000516 - relative root length, TO:0000644 - relative root dry weight, TO:0000276 - drought tolerance, TO:0000564 - spikelet width, TO:0001013 - lateral root number, TO:0000074 - blast disease, TO:0001006 - adventitious root number, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000656 - root development trait, TO:0000392 - sterility or fertility trait, TO:0006036 - stem elongation, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000180 - spikelet fertility, TO:0000657 - spikelet anatomy and morphology trait, TO:0000357 - growth and development trait	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001004 - anther development stage , PO:0007089 - stem elongation stage , PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0020104 - leaf sheath 
15187	MTD2	OsMTD2, YK11, OsCrRLK1L11, CrRLK1L11, OsMRLK29, MRLK29, FLR6, OsFLR6	MALE-GENE TRANSFER DEFECTIVE 2 	Catharanthus roseus receptor-like kinase1-like kinase 11, malectin/malectin-like receptor-like kinase 29, FERONIA-like receptor 6, male-gene transfer defective 2	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 11	osmtd2, osmtd2-1, osmtd2-2	5	AF230503. GO:0090404: pollen tube tip. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:1902066: regulation of cell wall pectin metabolic process. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os05g0280700	LOC_Os05g20150.1				GO:0009828 - plant-type cell wall loosening, GO:0009409 - response to cold, GO:0052546 - cell wall pectin metabolic process, GO:0009860 - pollen tube growth, GO:0009827 - plant-type cell wall modification, GO:0016324 - apical plasma membrane, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0016020 - membrane, GO:0005618 - cell wall, GO:0005524 - ATP binding	TO:0000437 - male sterility, TO:0000303 - cold tolerance, TO:0000436 - spikelet sterility, TO:0000455 - seed set percent, TO:0006007 - polysaccharide content, TO:0000605 - hydrogen peroxide content	PO:0025195 - pollen tube cell , PO:0025281 - pollen , PO:0001017 - M germinated pollen stage , PO:0009066 - anther 
15188	SDRLK52	YK18, SDRLK-52, OsSDRLK-52, OsSDRLK52	S-DOMAIN RECEPTOR-LIKE KINASE 52	S-Domain receptor like kinase-52	S-DOMAIN RECEPTOR-LIKE KINASE 52		4	AF230507.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0419900	LOC_Os04g34270.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0030912 - response to deep water, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0009413 - response to flooding, GO:0042742 - defense response to bacterium	TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf 
15189	_	YK19	_				10	AF230508.		Os10g0375000	LOC_Os10g22890.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
15190	SDRLK21	YK28, SDRLK-21, OsSDRLK-21, OsSDRLK21	S-DOMAIN RECEPTOR LIKE KINASE 21	S-Domain receptor like kinase-21	S-DOMAIN RECEPTOR LIKE KINASE 21		4	AF230513.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0103500	LOC_Os04g01310.1				GO:0048544 - recognition of pollen, GO:0051607 - defense response to virus, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000148 - viral disease resistance	PO:0009010 - seed , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf , PO:0009046 - flower 
15191	_	YK35	_				7	AF230515. LOC_Os07g03900. Os07g0131100 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).			LOC_Os07g03900				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030246 - carbohydrate binding		
15192	_	YK13	_				1	AF230504.							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15193	_	YK15	_				4	AF230506.							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
15194	_	YK20	_				1	AF230509.							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
15195	_	YK25	_				1	AF230511.							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15196	_	YK26	_				1	AF230512.							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
15197	_	YK30	_				11	AF230514.							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
15198	D53L	OsD53L	D53-LIKE	D53-like	D53-LIKE PROTEIN		12	Q2QYW5.  a D53-like/SMAXL protein family member.		Os12g0104300	LOC_Os12g01360.1				GO:0019538 - protein metabolic process		
15199	PI49	Pi49, Pi49(t)	PYRICULARIA ORYZAE RESISTANCE 49				11	The dominant resistance gene, designated Pi49, was mapped on chromosome 11 with genetic distance of 1.01 and 1.89 cM from SSR markers K10 and K134, respectively. Pi49 could be a novel allele of Pik-h.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
15200	JMJ705	OsJMJ705	JUMONJI 705	Jumonji 705, Jumonji C Domain Protein JMJ705	JUMONJI 705		1	JmjC domain containing protein,  histone lysine demethylase. H3K27 Demethylase.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0907400	LOC_Os01g67970.1				GO:0033169 - histone H3-K9 demethylation, GO:0035067 - negative regulation of histone acetylation, GO:0009826 - unidimensional cell growth, GO:0048366 - leaf development, GO:0003676 - nucleic acid binding, GO:0009741 - response to brassinosteroid stimulus, GO:0046872 - metal ion binding, GO:0010228 - vegetative to reproductive phase transition	TO:0000164 - stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
15201	_	PR10, OsPR10C, PR10C	_	pathogenesis-related gene 10			12	OsPR10C in Xie et al. 2022.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os12g0555300	LOC_Os12g36860.1				GO:0006952 - defense response, GO:0009607 - response to biotic stimulus, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000179 - biotic stress trait	
15202	TPS13	TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13, TPS35, OsTPS35, OsECBS, ECBS	TERPENE SYNTHASE 13	TERPENE SYNTHASE3, terpene synthase 3, terpene synthase 28, ent-casbene synthase	TERPENE SYNTHASE 13		7	a JA-induced gene. OsTPS28 in Lee et al. 2014, Ozawa et al. 2017, Zhan et al. 2020. one of three STPSs (sesquiterpene synthase). OsTPS13 in Kamolsukyunyong et al. 2013. TPS35 in Sun et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os07g0218200	LOC_Os07g11790.1				GO:0050449 - casbene synthase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0002213 - defense response to insect, GO:0009411 - response to UV, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0000287 - magnesium ion binding, GO:0010333 - terpene synthase activity, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000175 - bacterial blight disease resistance, TO:0000261 - insect damage resistance, TO:0002669 - diterpenoid phytoalexin content, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000454 - stem borer resistance, TO:0000160 - UV light sensitivity	
15203	JMJ706	OsJMJ706	JUMONJI 706	Jumonji 706	JUMONJI 706	jmj6-1, jmj6-2, jmj706	10	JmjC domain containing protein,  a heterochromatin-enriched protein. a H3K9 demethylase. TO:0000816: inflorescence bract anatomy and morphology trait. GO:0140683: histone H3K9me/H3K9me2 demethylase activity. GO:0090310: negative regulation of DNA methylation-dependent heterochromatin formation.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0577600	LOC_Os10g42690.1				GO:0032452 - histone demethylase activity, GO:0006346 - methylation-dependent chromatin silencing, GO:0005634 - nucleus, GO:0032196 - transposition	TO:0000455 - seed set percent, TO:0000240 - sterile lemma length, TO:0000421 - pollen fertility, TO:0006022 - floral organ development trait, TO:0000622 - flower development trait	
15205	JMJ707	OsJMJ707, DLN65, OsDLN65	JUMONJI 707	Jumonji 707, DLN repressor 65, DLN motif protein 65	JUMONJI 707	jmj707	2	JmjC domain containing protein. GO:0140683: histone H3K9me/H3K9me2 demethylase activity. GO:0090310: negative regulation of DNA methylation-dependent heterochromatin formation.	 Reproductive organ - Pollination, fertilization, fertility	Os02g0696700	LOC_Os02g46930.1				GO:0005634 - nucleus, GO:0006346 - methylation-dependent chromatin silencing, GO:0032196 - transposition, GO:0032452 - histone demethylase activity	TO:0000421 - pollen fertility, TO:0000455 - seed set percent	PO:0025121 - pollen sperm cell 
15206	JMJ702	OsJMJ702, DLN257, OsDLN257	JUMONJI 702	Jumonji 702, DLN repressor 257, DLN motif protein 257	JUMONJI 702		12	JmjC domain containing protein.		Os12g0279100	LOC_Os12g18150.1				GO:0046872 - metal ion binding, GO:0003676 - nucleic acid binding		
15207	_	JMJ708	_	Jumonji 708			6	JmjC domain containing protein.		Os06g0731500	LOC_Os06g51490.1						
15208	_	JMJ704	_	Jumonji 704			5	JmjC domain containing protein.		Os05g0302300	LOC_Os05g23670.1				GO:0032453 - histone demethylase activity (H3-K4 specific), GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0009910 - negative regulation of flower development, GO:0010216 - maintenance of DNA methylation		
15209	_	JMJ716, OsRING427, RING427	_	Jumonji 716, RING-type E3 ubiquitin ligase 427			3	JmjC domain containing protein.		Os03g0346700	LOC_Os03g22540.1						
15210	JMJ718	OsJMJ718	JUMONJI 718	Jumonji 718	JUMONJI 718		9	JmjC domain containing protein. one of two IBM1 homologs.		Os09g0393200	LOC_Os09g22540.1				GO:0003677 - DNA binding		
15211	JMJ719	OsJMJ719	JUMONJI 719	Jumonji 719			2	JmjC domain containing protein. GO:0000976: transcription regulatory region sequence-specific DNA binding. one of two IBM1 homologs.		Os02g0109400/Os02g0109501	LOC_Os02g01940.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0000785 - chromatin, GO:0031490 - chromatin DNA binding, GO:0033169 - histone H3-K9 demethylation, GO:0005634 - nucleus, GO:0032454 - histone demethylase activity (H3-K9 specific)		
15212	_	JMJ720, OsRING445, RING445	_	Jumonji 720, RING-type E3 ubiquitin ligase 445			2	JmjC domain containing protein. 		Os02g0828900	LOC_Os02g58210.1, LOC_Os02g58210.2				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		
15213	JMJ715	OsJMJ715	JUMONJI 715	Jumonji 715			3	JmjC domain containing protein. GO:0000976: transcription regulatory region sequence-specific DNA binding. GO:2000071: regulation of defense response by callose deposition.	 Tolerance and resistance - Insect resistance	Os03g0430400	LOC_Os03g31594.2, LOC_Os03g31594.1				GO:0031490 - chromatin DNA binding, GO:0000785 - chromatin, GO:0002213 - defense response to insect, GO:0009611 - response to wounding, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0052542 - callose deposition during defense response, GO:0052543 - callose deposition in cell wall, GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0033169 - histone H3-K9 demethylation, GO:0032454 - histone demethylase activity (H3-K9 specific)	TO:0000615 - abscisic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity	
15214	_	JMJ714	_	Jumonji 714			9	JmjC domain containing protein.		Os09g0483600	LOC_Os09g31050.1						
15215	_	JMJ713	_	Jumonji 713			1	JmjC domain containing protein.		Os01g0773200	LOC_Os01g56640.1, LOC_Os01g56640.2, LOC_Os01g56640.3						
15216	_	JMJ712	_	Jumonji 712			9	JmjC domain containing protein.		Os09g0489200	LOC_Os09g31380.1						
15217	_	JMJ717	_	Jumonji 717			8	JmjC domain containing protein.		Os08g0508500	LOC_Os08g39810.1						
15218	_	JMJ710, OsFbox611, Os_F0574, OsFBO15, FBO15	_	Jumonji 710, F-box protein 611, F-box-type E3 ubiquitin ligase O15			11	LOC_Os11g36450. JmjC domain containing protein. GO:0000987: core promoter proximal region sequence-specific DNA binding. Os_F0574 in Hua et al. 2011.		Os11g0572800	LOC_Os11g36450.1				GO:0010030 - positive regulation of seed germination, GO:0005634 - nucleus, GO:0043985 - histone H4-R3 methylation		
15219	_	JMJ711, OsFbox149, Os_F0347, DLN88, OsDLN88, OsFBO14, FBO14	_	Jumonji 711, F-box protein 149, DLN repressor 88, DLN motif protein 88, F-box-type E3 ubiquitin ligase O14			3	JmjC domain containing protein. Os_F0347 in Hua et al. 2011.		Os03g0389900	LOC_Os03g27250.1				GO:0005829 - cytosol, GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0008152 - metabolic process		
15220	_	JMJ709	_	Jumonji 709			1	JmjC domain containing protein. GO:0000987: core promoter proximal region sequence-specific DNA binding.		Os01g0546900	LOC_Os01g36630.1				GO:0010030 - positive regulation of seed germination, GO:0043985 - histone H4-R3 methylation, GO:0005634 - nucleus, GO:0033749 - histone demethylase activity (H4-R3 specific), GO:0033746 - histone demethylase activity (H3-R2 specific)		
15221	_	OsSDS1	_	salt and drought sensitive gene 1			1	OsSDS1 may play a negative role in salt and drought tolerance in plants.	 Tolerance and resistance - Stress tolerance	Os01g0864500	LOC_Os01g64470.1					TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
15222	TRZ2	OsaTRZ2, OsTRZ2	TRNASE Z2	tRNase Z2	TRNASE Z2	osatrz2	9	GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Coloration - Chlorophyll						GO:0042780 - tRNA 3'-end processing, GO:0042781 - 3'-tRNA processing endoribonuclease activity	TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	
15223	TMS5	TRZ1, OsTRZ1, OsaTRZ1, OsTMS5	THERMO-SENSITIVE GENIC MALE STERILE 5	tRNase Z1, RNase ZS1, thermo-sensitive genic male sterile 5	TRNASE Z1	tms5, tms5-1, tms5-2, nt-tms5-1	2	GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0214300 	LOC_Os02g12290.1				GO:0042780 - tRNA 3'-end processing, GO:0009555 - pollen development, GO:0042781 - 3'-tRNA processing endoribonuclease activity, GO:0048653 - anther development	TO:0000067 - genic male sterility-thermo sensitive, TO:0000053 - pollen sterility, TO:0000437 - male sterility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
15224	TRZ3	OsaTRZ3, OsTRZ3	TRNASE Z3	tRNase Z3	TRNASE Z3		1	GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.		Os01g0232300 	LOC_Os01g13150.1				GO:0042779 - tRNA 3'-trailer cleavage, GO:0016891 - endoribonuclease activity, producing 5'-phosphomonoesters		
15225	_		_				1	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0118400	LOC_Os01g02900.1, LOC_Os01g02900.2				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15226	_		_				1	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0118600	LOC_Os01g02910.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15227	_		_				1	Glycosyltransferase	 Biochemical character	Os01g0118700	LOC_Os01g02920.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process		
15228	_		_				1	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0119000	LOC_Os01g02930.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15229	_		_				1	Glycosyltransferase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0119100	LOC_Os01g02940.6, LOC_Os01g02940.4, LOC_Os01g02940.3, LOC_Os01g02940.2, LOC_Os01g02940.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15230	RS5	OsRS5, OsRS1, RS1	RAFFINOSE SYNTHASE 5 	raffinose synthase	RAFFINOSE SYNTHASE 5 		1	Q5VQG4. Glycosyltransferase. Rafs (Raffinose synthase) gene. OsRS1 in Zhang et al. 2024.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0170000	LOC_Os01g07530.1				GO:0006979 - response to oxidative stress, GO:0047274 - galactinol-sucrose galactosyltransferase activity, GO:0009408 - response to heat, GO:0005975 - carbohydrate metabolic process, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005615 - extracellular space, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0002649 - pesticide sensitivity, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009010 - seed 
15231	XXAT1	OsXXAT1	XYLAN XYLOSYL/ARABINOSYL TRANSFERASE 1	xylan xylosyl/arabinosyl transferase 1, Xylan 2-O-xylosyl/2-O-arabinosyl transferase 1	XYLAN XYLOSYL/ARABINOSYL TRANSFERASE 1		1	Glycosyltransferase. 	 Biochemical character	Os01g0498300	LOC_Os01g31370.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups		
15232	UGT703A4		UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A4	UDP-glucose-dependent glycosyltransferase 703A4	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A4		1	LOC_Os01g41430. UDP-glucosyltransferase. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0597800	LOC_Os01g41430.1				GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15233	CUGT1	OsCUGT1	COLD-UPREGULATED GLYCOSYLTRANSFERASE 1 	Cold-upregulated glycosyltransferase gene 1	COLD-UPREGULATED GLYCOSYLTRANSFERASE 1 	oscugt1	1	Glycosyltransferase family protein 1	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0622000	LOC_Os01g43380.1				GO:0006950 - response to stress, GO:0009409 - response to cold, GO:0009555 - pollen development, GO:0009690 - cytokinin metabolic process, GO:0030307 - positive regulation of cell growth, GO:0009699 - phenylpropanoid biosynthetic process, GO:0008284 - positive regulation of cell proliferation, GO:0009556 - microsporogenesis	TO:0002649 - pesticide sensitivity, TO:0000207 - plant height, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0000437 - male sterility, TO:0000180 - spikelet fertility, TO:0000436 - spikelet sterility	PO:0001007 - pollen development stage 
15234	UGT703A2	OsUGT703A2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A2	UDP-glucose-dependent glycosyltransferase 703A2, anthocyanin 3'-O-beta-glucosyltransferase	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A2		1	UDP-glucosyltransferase.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Coloration - Anthocyanin	Os01g0638000	LOC_Os01g45110.1				GO:0046689 - response to mercury ion, GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0009813 - flavonoid biosynthetic process, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion	TO:0000034 - chromium sensitivity, TO:0002649 - pesticide sensitivity	
15235	_		_	Glycosyltransferase 63 kDa subunit precursor, Ribophorin II			1	LOC_Os01g68324. Q5N7W3.	 Biochemical character	Os01g0911200	LOC_Os01g68324.3				GO:0009409 - response to cold, GO:0008250 - oligosaccharyltransferase complex, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0005739 - mitochondrion, GO:0005794 - Golgi apparatus, GO:0006487 - protein amino acid N-linked glycosylation, GO:0009506 - plasmodesma, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009505 - plant-type cell wall		
15236	XAT7	OsXAT7	XYLAN ARABINOSYLTRANSFERASE7	xylan arabinosyltransferase7	XYLAN ARABINOSYLTRANSFERASE7		1	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0956200	LOC_Os01g72610.1				GO:0045491 - xylan metabolic process, GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005794 - Golgi apparatus	TO:0002649 - pesticide sensitivity	
15237	_		_				2	Glycosyltransferase	 Biochemical character	Os02g0131200	LOC_Os02g03850.1, LOC_Os02g03850.2						
15238	XAT5	OsXAT5	XYLAN ARABINOSYLTRANSFERASE 5	xylan arabinosyltransferase5	XYLAN ARABINOSYLTRANSFERASE 5		2	Glycosyltransferase	 Biochemical character	Os02g0135500	LOC_Os02g04250.1, LOC_Os02g04250.3				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005794 - Golgi apparatus, GO:0045491 - xylan metabolic process, GO:0008152 - metabolic process		
15239	_		_				2	Glycosyltransferase	 Biochemical character	Os02g0327700	LOC_Os02g22190.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups		
15241	_		_				2	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0331200	LOC_Os02g22650.1, LOC_Os02g22650.2				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15242	_	OsGT2	_	glycosyltransferase 2			2	a putative xylosyltransferase (XXT). LOC_Os02g32750.	 Biochemical character	Os02g0529600	LOC_Os02g32750.1, LOC_Os02g32750.2				GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
15243	_	OsGT7	_	glycosyltransferase 7			2	a putative xylosyltransferase (XXT). LOC_Os02g49140.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0723200	LOC_Os02g49140.1				GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15244	UGT85E2		UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 85E2	UDP-glucose-dependent glycosyltransferase 85E2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 85E2		2	LOC_Os02g51910. UDP-glucosyltransferase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0755600	LOC_Os02g51910.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
15245	UGT3	qRA2, OsUGT3	UDP-GLYCOSYLTRANSFERASE 3	Cytokinin-O-glucosyltransferase2, Cytokinin-O-glucosyltransferase 2, QTL for ratooning ability on chromosome 2, UDP-glycosyltransferase 3	UDP-GLYCOSYLTRANSFERASE 3	qra2, ugt3	2	GO:1902265: abscisic acid homeostasis. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process.	 Character as QTL - Plant growth activity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0755900	LOC_Os02g51930.1				GO:0009651 - response to salt stress, GO:0060268 - negative regulation of respiratory burst, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0050403 - trans-zeatin O-beta-D-glucosyltransferase activity, GO:0009737 - response to abscisic acid stimulus, GO:0050502 - cis-zeatin O-beta-D-glucosyltransferase activity, GO:0009414 - response to water deprivation	TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0002649 - pesticide sensitivity, TO:0000096 - ratooning ability, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
15246	_	OsXXT1, SRH2	_	xyloglucan 6-xylosytransferase 1, short root hair2		srh2	3	Glycosyltransferase. LOC_Os03g18820.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0300000	LOC_Os03g18820.1, LOC_Os03g18820.2				GO:0016021 - integral to membrane, GO:0005802 - trans-Golgi network, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0009969 - xyloglucan biosynthetic process, GO:0033843 - xyloglucan 6-xylosyltransferase activity, GO:0035252 - UDP-xylosyltransferase activity, GO:0048767 - root hair elongation, GO:0005768 - endosome	TO:0002665 - root hair length, TO:0002649 - pesticide sensitivity	
15247	_	OsGT4	_	glycosyltransferase 4			3	a putative xylosyltransferase (XXT). LOC_Os03g19310.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0305800	LOC_Os03g19310.1				GO:0016021 - integral to membrane, GO:0008152 - metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0002649 - pesticide sensitivity	
15248	_	OsGT5	_	glycosyltransferase 5			3	a putative xylosyltransferase (XXT). LOC_Os03g19330.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0306100	LOC_Os03g19330.1				GO:0016021 - integral to membrane, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15250	_	Rafs, OsRS2, RS2	_	Raffinose synthase			3	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0808900	LOC_Os03g59430.2				GO:0005975 - carbohydrate metabolic process, GO:0005615 - extracellular space, GO:0005737 - cytoplasm	TO:0002649 - pesticide sensitivity	PO:0009010 - seed 
15251	_		_				3	Dolichyl-phosphate beta-glycosyltransferase	 Biochemical character	Os03g0821800	LOC_Os03g60700.1, LOC_Os03g60700.2				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005783 - endoplasmic reticulum		
15252	_		_				3	Dolichyl-phosphate beta-glycosyltransferase	 Biochemical character	Os03g0824400	LOC_Os03g60939.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0060359 - response to ammonium ion, GO:0033185 - dolichol-phosphate-mannose synthase complex, GO:0005783 - endoplasmic reticulum, GO:0008152 - metabolic process		
15253	_	OsGT43H	_	glycosyltransferase family GT43 member H			4	Glycosyltransferase family 43 protein. Q7XTB2. LOC_Os04g01280.	 Biochemical character	Os04g0103100	LOC_Os04g01280.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0008152 - metabolic process		
15254	_		_				4	Glycosyltransferase	 Biochemical character	Os04g0196600	LOC_Os04g12010.1, LOC_Os04g12010.2				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups		
15255	RS3	Rafs, OsRS3	RAFFINOSE SYNTHASE 3	Raffinose synthase	RAFFINOSE SYNTHASE 3		4	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0481100	LOC_Os04g40520.1				GO:0009737 - response to abscisic acid stimulus, GO:0003824 - catalytic activity, GO:0005615 - extracellular space, GO:0008152 - metabolic process, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0005975 - carbohydrate metabolic process, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002649 - pesticide sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009046 - flower , PO:0009005 - root 
15256	_		_				4	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0529700	LOC_Os04g44740.1				GO:0008152 - metabolic process, GO:0008378 - galactosyltransferase activity, GO:0005795 - Golgi stack	TO:0002649 - pesticide sensitivity	
15257	GT43I	OsGT43I, OsGT43B, GT43B	GLYCOSYLTRANSFERASE FAMILY 43 MEMBER I	glycosyltransferase family GT43 member I	GLYCOSYLTRANSFERASE FAMILY 43 MEMBER I		4	Glycosyltransferase family 43 protein. B9FCV3. OsGT43B in Noda et al. 2015. GO:0071555: cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0650300	LOC_Os04g55670.1				GO:0010417 - glucuronoxylan biosynthetic process, GO:0005975 - carbohydrate metabolic process, GO:0045492 - xylan biosynthetic process, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0016021 - integral to membrane, GO:0009834 - secondary cell wall biogenesis, GO:0000139 - Golgi membrane, GO:0008152 - metabolic process	TO:0002649 - pesticide sensitivity	
15258	_	OsGT43A, GT43A	_	glycosyltransferase family GT43 member A			5	Glycosyltransferase family 43 protein. an IRX9 homolog. Q75L84. LOC_Os05g03174.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0123100	LOC_Os05g03174.1, LOC_Os05g03174.2				GO:0010417 - glucuronoxylan biosynthetic process, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0016021 - integral to membrane, GO:0042285 - xylosyltransferase activity, GO:0045492 - xylan biosynthetic process, GO:0000139 - Golgi membrane, GO:0009834 - secondary cell wall biogenesis	TO:0002649 - pesticide sensitivity	
15259	RPN1	OsRpn1	RIBOPHORIN I	Glycosyltransferase 67 kDa subunit precursor, Ribophorin I, rice homolog of ribophorin I	RIBOPHORIN I		5	Q0DJC5. one unit of the oligosaccharyltransferase (OST) complex.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0301500	LOC_Os05g23600.2, LOC_Os05g23600.1				GO:0008250 - oligosaccharyltransferase complex, GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0006486 - protein amino acid glycosylation, GO:0018279 - protein amino acid N-linked glycosylation via asparagine, GO:0005783 - endoplasmic reticulum	TO:0002649 - pesticide sensitivity	
15260	XYXT2	OsXYXT2	XYLAN XYLOSYLTRANSFERASE 2	xylan xylosyltransferase 2, Xylan 2-O-xylosyltransferase 2	XYLAN XYLOSYLTRANSFERASE 2		5	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0391600	LOC_Os05g32544.1, LOC_Os05g32544.2				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15261	_	OsGT43E	_	glycosyltransferase family GT43 member E			5	Glycosyltransferase family 43 protein. an IRX9 homolog. Q6AT32. LOC_Os05g48600.	 Biochemical character	Os05g0559600	LOC_Os05g48600.1, LOC_Os05g48600.2				GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, GO:0000139 - Golgi membrane, GO:0045492 - xylan biosynthetic process, GO:0016021 - integral to membrane, GO:0008152 - metabolic process		
15262	AGA3	OsAGA3, OsRS4, RS4	ALKALINE ALPHA-GALACTOSIDASE 3	alkaline alpha-galactosidase, alkaline alpha-galactosidase 3, raffinose synthase 4	ALKALINE ALPHA-GALACTOSIDASE 3		6	Glycosyltransferase. Rafs (Raffinose synthase) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0172800	LOC_Os06g07600.1				GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0003824 - catalytic activity, GO:0050832 - defense response to fungus, GO:0006970 - response to osmotic stress, GO:0005975 - carbohydrate metabolic process, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000095 - osmotic response sensitivity, TO:0002649 - pesticide sensitivity	PO:0009046 - flower , PO:0009005 - root , PO:0025034 - leaf 
15263	_		_				6	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0311000	LOC_Os06g20570.1					TO:0002649 - pesticide sensitivity	
15264	_		_				6	Glycosyltransferase	 Biochemical character	Os06g0470000	LOC_Os06g27560.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups		
15265	_		_				6	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0475400	LOC_Os06g28124.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15266	_		_				6	Glycosyltransferase	 Biochemical character	Os06g0602800	LOC_Os06g40060.1, LOC_Os06g40060.2				GO:0016020 - membrane, GO:0008375 - acetylglucosaminyltransferase activity, GO:0008152 - metabolic process		
15267	XYXT1	OsXYXT1	XYLAN XYLOSYLTRANSFERASE 1	xylan xylosyltransferase1	XYLAN XYLOSYLTRANSFERASE 1		6	LOC_Os06g49300. Glycosyltransferase GT61 family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0707000	LOC_Os06g49300.1				GO:0008152 - metabolic process, GO:0042285 - xylosyltransferase activity, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005794 - Golgi apparatus, GO:0045492 - xylan biosynthetic process	TO:0002649 - pesticide sensitivity	
15268	XAT4	OsXAT4	XYLAN ARABINOSYLTRANSFERASE 4	xylan arabinosyltransferase4	XYLAN ARABINOSYLTRANSFERASE 4		6	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0707200	LOC_Os06g49320.1				GO:0005794 - Golgi apparatus, GO:0045491 - xylan metabolic process, GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15269	RS2	OsRS2, OsRS5, RS5	RAFFINOSE SYNTHASE 2	raffinose synthase 2	RAFFINOSE SYNTHASE 2		7	Glycosyltransferase. OsRS5 in Zhang et al. 2024. GO:0052692: raffinose alpha-galactosidase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0209100	LOC_Os07g10840.1				GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0005975 - carbohydrate metabolic process, GO:0004557 - alpha-galactosidase activity, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005615 - extracellular space, GO:0005739 - mitochondrion, GO:0005737 - cytoplasm	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	PO:0025034 - leaf , PO:0009010 - seed , PO:0009046 - flower 
15270	_		_				7	Glycosyltransferase	 Biochemical character	Os07g0567300	LOC_Os07g37990.1				GO:0008152 - metabolic process, GO:0005795 - Golgi stack, GO:0008378 - galactosyltransferase activity		
15271	_		_				7	Glycosyltransferase	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0657400	LOC_Os07g46380.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15272	_	OsGT43G, GT43G, OsIRX9L, IRX9L	_	glycosyltransferase family GT43 member G			10	Glycosyltransferase family 43 protein. Q8S626.	 Biochemical character	Os10g0205300	LOC_Os10g13810.1				GO:0010417 - glucuronoxylan biosynthetic process, GO:0009834 - secondary cell wall biogenesis, GO:0000139 - Golgi membrane, GO:0010584 - pollen exine formation, GO:0042285 - xylosyltransferase activity, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity		
15273	XAT6	OsXAT6	XYLAN ARABINOSYLTRANSFERASE 6	xylan arabinosyltransferase6	XYLAN ARABINOSYLTRANSFERASE 6		10	Glycosyltransferase	 Biochemical character	Os10g0492200	LOC_Os10g35020.1, LOC_Os10g35020.2				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005794 - Golgi apparatus, GO:0008152 - metabolic process, GO:0045491 - xylan metabolic process		
15274	_		_				10	Glycosyltransferase family protein 1	 Biochemical character	Os10g0546200	LOC_Os10g39900.1				GO:0009058 - biosynthetic process		
15275	_	OsGT6	_	glycosyltransferase 6			11	a putative xylosyltransferase (XXT). LOC_Os11g34390.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0546500	LOC_Os11g34390.1				GO:0005802 - trans-Golgi network, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0016021 - integral to membrane, GO:0008152 - metabolic process, GO:0005768 - endosome	TO:0002649 - pesticide sensitivity	
15276	_		_				12	Glycosyltransferase	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0238900	LOC_Os12g13640.1				GO:0008152 - metabolic process, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002649 - pesticide sensitivity	
15277	_		_				12	Glycosyltransferase	 Biochemical character	Os12g0555400	LOC_Os12g36870.1						
15278	DWA1	DWA1	DROUGHT-INDUCED WAX ACCUMULATION 1	Drought-Induced Wax Accumulation 1		dwa1	4	CT836487.	 Tolerance and resistance - Stress tolerance	Os04g0473900	LOC_Os04g39780.1				GO:0020037 - heme binding, GO:0004096 - catalase activity, GO:0006979 - response to oxidative stress	TO:0000709 - leaf gloss, TO:0000276 - drought tolerance	
15279	WSL2	OsGL1-1, WSL2	WAX CRYSTAL-SPARSE LEAF 2	Glossy1-homologous gene 1, Wax crystal-sparse leaf2, Wax crystal-sparse leaf 2		osgl1-1, wsl2	9	LOC_Os09g25850. a rice homologue of WAX2/GL1. a member of WAX2-like protein family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0426800	LOC_Os09g25850.1				GO:0005506 - iron ion binding, GO:0010025 - wax biosynthetic process, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006633 - fatty acid biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0010166 - wax metabolic process	TO:0000188 - drought sensitivity, TO:0000709 - leaf gloss	
15280	GL1-2	OsGL1-2, WAX2, OsWAX2	GLOSSY1-HOMOLOGOUS GENE 2	Glossy1-homologous gene 2	GLOSSY1-HOMOLOGOUS PROTEIN 2	osgl1-2	2	likely related to drought and salt stress (Whankaew et al. 2020).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0178800	LOC_Os02g08230.1, LOC_Os02g08230.2				GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity, GO:0010025 - wax biosynthetic process, GO:0043447 - alkane biosynthetic process, GO:0046184 - aldehyde biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding	TO:0000276 - drought tolerance, TO:0000709 - leaf gloss	
15281	_	OsGL1-7, CER2, CER1, OsCER1, OsCER2	_	Glossy1-homologous gene 7, ECERIFERUM2, ECERIFERUM1			4	CoA-dependent acyltransferase. LOC_Os04g43270. Os04g0512100 (in Rap1 (build3)).	 Biochemical character								
15282	_	OsGL1-8, GL1-8	_	Glossy1-homologous gene 8			7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0101500	LOC_Os07g01150.1, LOC_Os07g01150.2, LOC_Os07g01150.3				GO:0080065 - 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0009941 - chloroplast envelope	TO:0006001 - salt tolerance	
15283	_	OsGL1-9	_	Glossy1-homologous gene 9			7		 Biochemical character	Os07g0627700	LOC_Os07g43460.1				GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity		
15284	_	OsGL1-10	_	Glossy1-homologous gene 10			10		 Biochemical character	Os10g0545200	LOC_Os10g39810.1, LOC_Os10g39810.2				GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0016491 - oxidoreductase activity, GO:0006633 - fatty acid biosynthetic process		
15285	GL1-11	OsGL1-11	GLOSSY1-HOMOLOGOUS GENE 11	Glossy1-homologous gene 11	GLOSSY1-HOMOLOGOUS PROTEIN 11		11	Q2QZ14. one of the putative target genes of osa-miR1846a/b-5p. GO:1990465: aldehyde oxygenase (deformylating) activity. GO:1901700: response to oxygen-containing compound. GO:1904276: regulation of wax biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0707600	LOC_Os11g48020.1				GO:0010025 - wax biosynthetic process, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0009409 - response to cold, GO:0009924 - octadecanal decarbonylase activity, GO:0080065 - 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, GO:0006950 - response to stress, GO:0005789 - endoplasmic reticulum membrane, GO:0016491 - oxidoreductase activity, GO:0016126 - sterol biosynthetic process, GO:0000254 - C-4 methylsterol oxidase activity	TO:0000303 - cold tolerance	
15286	WSL1	OsWSL1, FAE', OsFAE1', OsCER6, CER6, OsKCS17, KCS17	WAX CRYSTAL-SPARSE LEAF 1	Wax Crystal-Sparse Leaf1, FATTY ACID ELONGATION1', fatty acid elongase 1', ECERIFERUM 6, 3-Ketoacyl-CoA synthase 17, BETA-KETOACYL COA SYNTHASE	3-KETOACYL-COA SYNTHASE 17		6	one of the beta-ketoacyl CoA synthase genes. OsCER6 in Mao et al. 2012. a rice homologue of A. thaliana wax synthesis-related gene. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0598800	LOC_Os06g39750.1, LOC_Os06g39750.2, LOC_Os06g39750.3				GO:0006633 - fatty acid biosynthetic process, GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000709 - leaf gloss	PO:0009010 - seed , PO:0009005 - root 
15287	LACS7	OsLACS7	LONG-CHAIN ACYL-COA SYNTHETASE 7	long-chain acyl-CoA synthetase 7	LONG-CHAIN ACYL-COA SYNTHETASE 7		12	AMP-binding enzyme family.	 Biochemical character	Os12g0143900	LOC_Os12g04990.1, LOC_Os12g04990.5, LOC_Os12g04990.4, LOC_Os12g04990.3, LOC_Os12g04990.2				GO:0003824 - catalytic activity	TO:0000709 - leaf gloss	
15288	LACS8	OsLACS8	LONG-CHAIN ACYL-COA SYNTHETASE 8	long-chain acyl-CoA synthetase 8	LONG-CHAIN ACYL-COA SYNTHETASE 8		5		 Biochemical character	Os05g0317200	LOC_Os05g25310.1, LOC_Os05g25310.2				GO:0003824 - catalytic activity, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0009941 - chloroplast envelope	TO:0000709 - leaf gloss	
15289	NUC1	OsNUC1, OsNUC1-S, OsNUC1-L	NUCLEOLIN 1	nucleolin 1, OsNucleolin1-L, OsNucleolin1-S	NUCLEOLIN 1		4	Q7XTT4. DQ012289. longer form: OsNUC1-L (AK103446) and shorter form: OsNUC1-S(AK063918).	 Tolerance and resistance - Stress tolerance	Os04g0620700	LOC_Os04g52960.1				GO:0009651 - response to salt stress, GO:0045913 - positive regulation of carbohydrate metabolic process, GO:0008643 - carbohydrate transport, GO:0005730 - nucleolus, GO:0003723 - RNA binding, GO:0000166 - nucleotide binding, GO:0006364 - rRNA processing, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0001027 - net photosynthetic rate, TO:0000522 - stomatal conductance, TO:0001018 - transpiration rate, TO:0000371 - yield trait, TO:0006001 - salt tolerance	
15290	_	OsCTR1, OsRING325, RING325	_	chloroplast targeting RING E3 ligase 1, RING-type E3 ubiquitin ligase 325			4	LOC_Os04g16970.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0243700	LOC_Os04g16970.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0008270 - zinc ion binding	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
15291	_	OsCP12	_	chloroplast protein 12, Calvin cycle protein CP12			3	LOC_Os03g19380. GO:0080153: negative regulation of reductive pentose-phosphate cycle.		Os03g0306800	LOC_Os03g19380.1				GO:0043234 - protein complex, GO:0009744 - response to sucrose stimulus, GO:0009941 - chloroplast envelope		
15292	_	OsRP1	_	ribosomal protein 1			11	Q0IQF7. LOC_Os11g03400.		Os11g0127900	LOC_Os11g03400.1				GO:0005618 - cell wall, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome, GO:0009506 - plasmodesma, GO:0009507 - chloroplast, GO:0016020 - membrane, GO:0022627 - cytosolic small ribosomal subunit		
15293	_	OsMASP1	_	mitochondrial ATP synthase precursor 1			2		 Biochemical character	Os02g0131300	LOC_Os02g03860.1				GO:0005730 - nucleolus, GO:0050897 - cobalt ion binding, GO:0008270 - zinc ion binding, GO:0009555 - pollen development, GO:0005753 - mitochondrial proton-transporting ATP synthase complex, GO:0009507 - chloroplast, GO:0005507 - copper ion binding		
15294	DNRL1	OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2, OsDNRL1	DYNAMIC NARROW-ROLLED LEAF 1	phospho-2-dehydro-3-deoxyheptonate aldolase, 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2, Dynamic Narrow-Rolled Leaf 1, 3-deoxy-7-phosphoheptulonate synthase 1, Phospho-2-dehydro-3-deoxyheptonate aldolase 2		dnrl1	7	Q75W16. AB122058. OsDAHPS2 in Sato et al. 2006, Kishi-Kaboshi et al. 2018. TO:0006064: rolled leaf. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0622200	LOC_Os07g42960.2, LOC_Os07g42960.1				GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity, GO:0009411 - response to UV, GO:0045764 - positive regulation of cellular amino acid metabolic process, GO:0009965 - leaf morphogenesis, GO:0009507 - chloroplast, GO:0009423 - chorismate biosynthetic process, GO:0009073 - aromatic amino acid family biosynthetic process	TO:0000370 - leaf width, TO:0000655 - leaf development trait, TO:0002673 - amino acid content, TO:0002674 - tryptophan content, TO:0000160 - UV light sensitivity	PO:0009005 - root , PO:0009006 - shoot system , PO:0001050 - leaf development stage 
15295	_	OsXYLA1	_	xylose isomerase			7	Q75W16.	 Biochemical character	Os07g0669100	LOC_Os07g47290.1, LOC_Os07g47290.3				GO:0009045 - xylose isomerase activity, GO:0042732 - D-xylose metabolic process, GO:0006098 - pentose-phosphate shunt, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0005774 - vacuolar membrane, GO:0046872 - metal ion binding		
15296	CYP94C4	OsCYP94C4	CYTOCHROME P450 94C4	Cytochrome P450 94C4	CYTOCHROME P450 94C4		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0445100	LOC_Os05g37250.1				GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009694 - jasmonic acid metabolic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding	TO:0006001 - salt tolerance	
15297	HCI1	OsHCI1, E3UL, OsRING206, RING206	HEAT AND COLD INDUCED 1	heat and cold induced 1, RING domain-containing E3 ubiquitin ligase, RING-type E3 ubiquitin ligase 206			10	a RING finger E3 ligase.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0445400	LOC_Os10g30850.1, LOC_Os10g30850.2				GO:0009408 - response to heat, GO:0005794 - Golgi apparatus, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity	
15298	_	OsBGLU1	_	periplasmic beta-glucosidase 1			3		 Biochemical character	Os03g0749300	LOC_Os03g53800.1, LOC_Os03g53800.2, LOC_Os03g53800.3, LOC_Os03g53800.4, LOC_Os03g53800.5				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005886 - plasma membrane		
15299	_	OsbHLH065, OsbHLH65	_	basic helix-loop-helix protein 065			4	ethylene-responsive protein.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0493100	LOC_Os04g41570.1, LOC_Os04g41570.2, LOC_Os04g41570.3				GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0002213 - defense response to insect, GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000168 - abiotic stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance	
15300	_	OsGRP1, GRP1, OsGPRP3, GPRP3	_	glycine-rich cell-wall structural protein 1, glycine- and proline-rich protein 3		osgprp3	5	TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os05g0119200	LOC_Os05g02770.1					TO:0000592 - 1000-dehulled grain weight, TO:0000397 - grain size, TO:0000602 - total fat content, TO:0002653 - endosperm storage protein content, TO:0000399 - grain thickness, TO:0000162 - seed quality	PO:0009010 - seed 
15301	BHLH7	OsbHLH007, bHLH007	BASIC HELIX-LOOP-HELIX PROTEIN 7	basic helix-loop-helix protein 007	BASIC HELIX-LOOP-HELIX PROTEIN 7		4		 Vegetative organ - Leaf,  Coloration - Anthocyanin	Os04g0300600	LOC_Os04g23440.1				GO:0005634 - nucleus, GO:0031540 - regulation of anthocyanin biosynthetic process	TO:0000326 - leaf color	
15302	_	OsbHLH008, bHLH008, OsMYL2, MYL2, DLN6, OsDLN6, OsMYC1, MYC1	_	basic helix-loop-helix protein 008, OsMYC2-like protein 2, MYC2-like protein 2, DLN repressor 6, DLN motif protein 6, Myelocytomatosis oncogene transcription factor 1			1		 Tolerance and resistance	Os01g0235700	LOC_Os01g13460.1				GO:0006952 - defense response, GO:0046983 - protein dimerization activity, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000179 - biotic stress trait, TO:0000236 - crop damage resistance, TO:0000172 - jasmonic acid sensitivity	PO:0009047 - stem 
15303	BHLH9	OsbHLH009, bHLH009, OsMYC2, MYC2	BASIC HELIX-LOOP-HELIX PROTEIN 9	basic helix-loop-helix protein 009, Myelocytomatosis oncogene transcription factor 2, transcription factor MYC2-like, MYC2-like	BASIC HELIX-LOOP-HELIX PROTEIN 9	osmyc2, myc2, myc2-3, myc2-5, myc2-6	10	Q336P5. functional orthologue of AtMYC2. a homolog of Arabidopsis MYC2. GO:2000068: regulation of defense response to insect. GO:1900057: positive regulation of leaf senescence. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1901002: positive regulation of response to salt stress. GO:1900426: positive regulation of defense response to bacterium. GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process. GO:1900150: regulation of defense response to fungus. 	 Tolerance and resistance,  Character as QTL - Plant growth activity,  Coloration - Anthocyanin,  Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf	Os10g0575000	LOC_Os10g42430.1				GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0032951 - regulation of beta-glucan biosynthetic process, GO:0043619 - regulation of transcription from RNA polymerase II promoter in response to oxidative stress, GO:0009718 - anthocyanin biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009689 - induction of phytoalexin biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0002213 - defense response to insect, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051090 - regulation of transcription factor activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity, GO:0031348 - negative regulation of defense response, GO:0045926 - negative regulation of growth, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0009269 - response to desiccation, GO:0050832 - defense response to fungus, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0010150 - leaf senescence, GO:0010200 - response to chitin, GO:0006952 - defense response, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009646 - response to absence of light, GO:0010229 - inflorescence development, GO:0010100 - negative regulation of photomorphogenesis, GO:0051607 - defense response to virus	TO:0000657 - spikelet anatomy and morphology trait, TO:0002675 - gibberellic acid content, TO:0000357 - growth and development trait, TO:0000261 - insect damage resistance, TO:0000295 - chlorophyll-b content, TO:0000172 - jasmonic acid sensitivity, TO:0000293 - chlorophyll-a content, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000621 - inflorescence development trait, TO:0000495 - chlorophyll content, TO:0000075 - light sensitivity, TO:0000249 - leaf senescence, TO:0006002 - proline content, TO:0000424 - brown planthopper resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000102 - phosphorus sensitivity	PO:0009047 - stem , PO:0001054 - 4 leaf senescence stage , PO:0001083 - inflorescence development stage 
15304	_	OsbHLH011	_	basic helix-loop-helix protein 011			8			Os08g0543700	LOC_Os08g43070.1				GO:0005634 - nucleus		
15305	_	OsbHLH012, bHLH012, bHLH12, OsRb, Rb, Rb1, OsRb1	_	basic helix-loop-helix protein 012			1		 Coloration - Anthocyanin	Os01g0576100	LOC_Os01g39480.1				GO:0046983 - protein dimerization activity, GO:0010431 - seed maturation, GO:0009718 - anthocyanin biosynthetic process	TO:0000071 - anthocyanin content, TO:0002661 - seed maturation, TO:0002724 - leaf sheath color	PO:0007632 - seed maturation stage 
15306	BHLH14	OsbHLH014, bHLH014, bHLH14, BEAR1, OsBEAR1	BASIC HELIX-LOOP-HELIX PROTEIN 14	basic helix-loop-helix protein 014	BASIC HELIX-LOOP-HELIX PROTEIN 14		11		 Tolerance and resistance - Stress tolerance	Os11g0258700	LOC_Os11g15210.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis	TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009051 - spikelet 
15307	PA	OsbHLH015, OsbHLH15, bHLH15, OsGL3B, GL3B, OsMYC6, MYC6, OsPa, Pa, OsHLH2, HLH2	PURPLE APICULUS	basic helix-loop-helix protein 015, GLABRA3B, GLABRA 3B, Myelocytomatosis oncogene transcription factor 6, purple apiculus		hlh2-1, hlh2-2, hlh2-3, hlh2-4	4	a homologue of Arabidopsis transcription factor GL3. PO:0025616: lemma apiculus. TO:0001109: grain color trait.	 Seed - Morphological traits,  Coloration - Anthocyanin,  Other	Os04g0557200	LOC_Os04g47040.1				GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0046983 - protein dimerization activity	TO:0000140 - apiculus color, TO:0000071 - anthocyanin content	PO:0006033 - paleal apiculus , PO:0007010 - whole plant fruit ripening stage , PO:0001170 - seed development stage 
15308	B2	OsbHLH016, Kala4, OsKala4, OSB2, OsB2	_	"basic helix-loop-helix protein 016, Key gene for
black coloration by anthocyanin accumulation on chromosome 4"			4	AB021080. Both Pb (PURPLE PERICARP B) and Kala4 map to a region between RM1354 and RM7210 on chromosome 4 and it is suggest that Pb is an allele of Kala4 (Maeda et al. 2014). an R/B-type regulatory gene. OSB1 (Os04g0557800) and OSB2 (Os04g0557500) are the major components of the Plw allele (Sakamoto et al. 2001). TO:0001109: grain color trait.	 Coloration - Anthocyanin,  Seed,  Seed - Morphological traits	Os04g0557500	LOC_Os04g47059.1				GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000071 - anthocyanin content, TO:0000707 - pericarp color	
15309	_	OsbHLH018	_	basic helix-loop-helix protein 018			3			Os03g0725800	LOC_Os03g51580.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15310	_	OsbHLH019	_	basic helix-loop-helix protein 019			3			Os03g0229100	LOC_Os03g12760.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15311	_	OsbHLH020, bHLH020, bHLH20	_	basic helix-loop-helix protein 020			3	LOC_Os03g46860. HQ858862. bHLH transcription factor.	 Other	Os03g0671800	LOC_Os03g46860.1				GO:0003677 - DNA binding		
15312	_	OsbHLH021	_	basic helix-loop-helix protein 021			12			Os12g0632600	LOC_Os12g43620.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15313	_	OsbHLH022	_	basic helix-loop-helix protein 022			3			Os03g0671000	LOC_Os03g46790.1				GO:0003677 - DNA binding		
15314	_	OsbHLH023	_	basic helix-loop-helix protein 023			10			Os10g0104300	LOC_Os10g01530.1				GO:0003677 - DNA binding		
15315	_	OsbHLH024	_	basic helix-loop-helix protein 024			1		 Tolerance and resistance - Stress tolerance	Os01g0575200	LOC_Os01g39330.1				GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus	TO:0000168 - abiotic stress trait	
15316	DPF	OsbHLH025, bHLH025, bHLH25	DITERPENIOD PHYTOALEXIN FACTOR	basic helix-loop-helix protein 025	DITERPENIOD PHYTOALEXIN FACTOR		1	HQ858870. bHLH transcription factor. Overexpressor accumulates diterpenoid phytoalexins, i.e. momilactones and phytocassanes. Knock-down rice does not accumulate them compared to WT.	 Other,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Coloration - Anthocyanin	Os01g0196300	LOC_Os01g09990.2, LOC_Os01g09990.1				GO:0052322 - positive regulation of phytoalexin biosynthetic process, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0005634 - nucleus, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000326 - leaf color	
15317	BHLH26	OsbHLH026, bHLH026, bHLH26	BASIC HELIX-LOOP-HELIX PROTEIN 26	basic helix-loop-helix protein 026	BASIC HELIX-LOOP-HELIX PROTEIN 26	bhlh026-cri-6, bhlh026-cri-7	1		 Other,  Tolerance and resistance - Disease resistance		LOC_Os01g09930.1				GO:0006952 - defense response, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0000112 - disease resistance	
15318	BHLH27	OsbHLH027, OsbHLH27, bHLH027, bHLH27	BASIC HELIX-LOOP-HELIX PROTEIN 27	basic helix-loop-helix protein 027	BASIC HELIX-LOOP-HELIX PROTEIN 27		1			Os01g0195700/Os01g0195801	LOC_Os01g09900.1				GO:0046983 - protein dimerization activity		
15319	_	OsbHLH028	_	basic helix-loop-helix protein 028			5			Os05g0199800	LOC_Os05g11070.1						
15320	_	OsbHLH029	_	basic helix-loop-helix protein 029			2			Os02g0221100	LOC_Os02g12820.1						
15321	_	OsbHLH030	_	basic helix-loop-helix protein 030			6			Os06g0570900	LOC_Os06g37410.1						
15322	BHLH31	OsbHLH031, bHLH031, bHLH31, BIM2, OsBIM2	BASIC HELIX-LOOP-HELIX PROTEIN 31	basic helix-loop-helix protein 031, BES1-interacting Myc-like1, transcription factor BIM2	BASIC HELIX-LOOP-HELIX PROTEIN 31		8	HQ858865. bHLH transcription factor. homolog with BIM gene family in Arabidopsis.	 Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0490000	LOC_Os08g38210.5, LOC_Os08g38210.4, LOC_Os08g38210.1, LOC_Os08g38210.2				GO:0009742 - brassinosteroid mediated signaling, GO:0009628 - response to abiotic stimulus, GO:0005634 - nucleus	TO:0000217 - genic male sterility-thermo-photoperiod sensitive, TO:0000168 - abiotic stress trait	
15323	BHLH32	OsbHLH032, bHLH032, OsbHLH32, bHLH32, OsBIM1, BIM1	BASIC HELIX-LOOP-HELIX PROTEIN 32	basic helix-loop-helix protein 032, BES1-Interacting MYC-like Protein1, BES1-Interacting MYC-like Protein 1	BASIC HELIX-LOOP-HELIX PROTEIN 32	osbim1	9	the closest rice homolog of AtBIM1.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os09g0475400	LOC_Os09g29930.1, LOC_Os09g29930.2, LOC_Os09g29930.3				GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0006001 - salt tolerance, TO:0000396 - grain yield	
15324	_	OsbHLH033, bHLH033, bHLH33, OsZFP, ZFP	_	basic helix-loop-helix protein 033, zinc finger protein			1	Q943I6.	 Tolerance and resistance - Disease resistance,  Other	Os01g0871200	LOC_Os01g65080.1, LOC_Os01g65080.2, LOC_Os01g65080.3, LOC_Os01g65080.4				GO:0010447 - response to acidity, GO:0046872 - metal ion binding, GO:0006351 - transcription, DNA-dependent, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0019048 - virus-host interaction, GO:0010044 - response to aluminum ion	TO:0000020 - black streak dwarf virus resistance	
15325	BHLH34	OsbHLH034, bHLH034	BASIC HELIX-LOOP-HELIX PROTEIN 34	basic helix-loop-helix protein 034	BASIC HELIX-LOOP-HELIX PROTEIN 34		2		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0726700	LOC_Os02g49480.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	
15326	_	OsbHLH035, bHLH035, OsbHLH35, bHLH35, bHLH107	_	basic helix-loop-helix protein 035		Osbhlh035	1	bHLH107 in Fan et al. 2021.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os01g0159800	LOC_Os01g06640.3, LOC_Os01g06640.2, LOC_Os01g06640.1				GO:0009651 - response to salt stress, GO:0009628 - response to abiotic stimulus, GO:0010030 - positive regulation of seed germination, GO:0046689 - response to mercury ion, GO:0010038 - response to metal ion, GO:0009738 - abscisic acid mediated signaling, GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion, GO:0005634 - nucleus	TO:0002667 - abscisic acid content, TO:0000168 - abiotic stress trait, TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance	PO:0005052 - plant callus , PO:0009089 - endosperm , PO:0005360 - aleurone layer , PO:0020110 - scutellum , PO:0020033 - coleoptile , PO:0020100 - hypocotyl , PO:0009015 - portion of vascular tissue , PO:0000025 - root tip , PO:0009010 - seed , PO:0009009 - plant embryo 
15327	_	OsbHLH036	_	basic helix-loop-helix protein 036			5			Os05g0163900	LOC_Os05g07120.1, LOC_Os05g07120.2				GO:0016597 - amino acid binding, GO:0005634 - nucleus, GO:0008152 - metabolic process		
15328	_	OsbHLH037, bHLH037	_	basic helix-loop-helix protein 037			1			Os01g0218100	LOC_Os01g11910.1				GO:0005634 - nucleus		PO:0009005 - root 
15329	BHLH38	OsbHLH038, bHLH038, OsbHLH38	BASIC HELIX-LOOP-HELIX PROTEIN 38	basic helix-loop-helix protein 038	BASIC HELIX-LOOP-HELIX PROTEIN 38		8	qTAC8 (a QTL controlling rice tiller angle) candidate.	 Tolerance and resistance - Stress tolerance	Os08g0432800	LOC_Os08g33590.1				GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress	TO:0002667 - abscisic acid content, TO:0006002 - proline content, TO:0000525 - sodium to potassium content ratio, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
15330	_	OsbHLH039	_	basic helix-loop-helix protein 039			9			Os09g0410700	LOC_Os09g24490.1				GO:0005634 - nucleus		
15331	_	OsbHLH040, bHLH40	_	basic helix-loop-helix protein 040			3			Os03g0260600	LOC_Os03g15440.1				GO:0046983 - protein dimerization activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		
15332	_	OsbHLH041	_	basic helix-loop-helix protein 041			3			Os03g0811400	LOC_Os03g59670.1				GO:0005634 - nucleus, GO:0009941 - chloroplast envelope, GO:0003677 - DNA binding		
15333	_	OsbHLH042, bHLH042	_	basic helix-loop-helix protein 042			8			Os08g0477900	LOC_Os08g37290.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
15334	_	OsbHLH043	_	basic helix-loop-helix protein 043			9			Os09g0463900	LOC_Os09g28900.1						
15335	BHLH44	OsbHLH044, bHLH044, bHLH44, OsbHLH96, bHLH96, bHLH096	BASIC HELIX-LOOP-HELIX PROTEIN 44	basic helix-loop-helix protein 044	BASIC HELIX-LOOP-HELIX PROTEIN 44	bhlh044	3	HQ858866. bHLH transcription factor. OsbHLH96 in Wang et al. 2019. GO:2000280: regulation of root development.	 Tolerance and resistance - Insect resistance,  Vegetative organ - Root,  Other,  Tolerance and resistance - Stress tolerance	Os03g0188400	LOC_Os03g08930.1				GO:0003677 - DNA binding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0048830 - adventitious root development, GO:0002213 - defense response to insect, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000424 - brown planthopper resistance, TO:0002685 - crown root number, TO:0000524 - submergence tolerance	
15336	_	OsbHLH045	_	basic helix-loop-helix protein 045			10			Os10g0376900	LOC_Os10g23050.1				GO:0003677 - DNA binding		
15337	_	OsbHLH046	_	basic helix-loop-helix protein 046			9			Os09g0468700	LOC_Os09g29360.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15338	_	OsbHLH047, bHLH047	_	basic helix-loop-helix protein 047			8	HQ858861. bHLH transcription factor.	 Other	Os08g0483900	LOC_Os08g37730.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
15339	BHLH48	OsbHLH048, bHLH048, bHLH48	BASIC HELIX-LOOP-HELIX PROTEIN 48	basic helix-loop-helix protein 048	BASIC HELIX-LOOP-HELIX PROTEIN 48		2	GO:2000033: regulation of seed dormancy process. 	 Seed - Physiological traits - Dormancy	Os02g0759000	LOC_Os02g52190.1				GO:0010231 - maintenance of seed dormancy, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010162 - seed dormancy	TO:0000253 - seed dormancy	
15340	_	OsbHLH049	_	basic helix-loop-helix protein 049			2			Os02g0691500	LOC_Os02g46560.1				GO:0005634 - nucleus		
15341	_	OsbHLH050	_	basic helix-loop-helix protein 050			4			Os04g0590800	LOC_Os04g50090.1						
15342	BHLH51	OsbHLH051, bHLH051, bHLH51, OsFAMA, FAMA	BASIC HELIX-LOOP-HELIX PROTEIN 51	basic helix-loop-helix protein 051	BASIC HELIX-LOOP-HELIX PROTEIN 51	c-osfama	5		 Vegetative organ - Leaf	Os05g0586300	LOC_Os05g50900.1				GO:0045597 - positive regulation of cell differentiation, GO:0016597 - amino acid binding, GO:0010052 - guard cell differentiation, GO:0008152 - metabolic process, GO:0051782 - negative regulation of cell division, GO:0010374 - stomatal complex development, GO:0010443 - meristemoid mother cell division, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010442 - guard cell morphogenesis		
15343	_	OsbHLH052	_	basic helix-loop-helix protein 052			3			Os03g0122100	LOC_Os03g03000.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15344	BHLH53	OsbHLH053, bHLH053, bHLH53, OsSPCH2, SPCH2	BASIC HELIX-LOOP-HELIX PROTEIN 53	basic helix-loop-helix protein 053, SPEECHLESS 2	BASIC HELIX-LOOP-HELIX PROTEIN 53	c-osspch2, t-osspch2	2	GO:2000123: positive regulation of stomatal complex development.	 Vegetative organ - Leaf	Os02g0257500	LOC_Os02g15760.1				GO:0010374 - stomatal complex development, GO:0010440 - stomatal lineage progression, GO:0005634 - nucleus, GO:0010444 - guard mother cell differentiation, GO:0010377 - guard cell fate commitment	TO:0000566 - stomatal frequency	
15345	BHLH54	OsbHLH054, bHLH054, bHLH54, OsSPCH1, SPCH1, SPCH	BASIC HELIX-LOOP-HELIX PROTEIN 54	basic helix-loop-helix protein 054, SPEECHLESS 1, SPEECHLESS1	BASIC HELIX-LOOP-HELIX PROTEIN 54	c-osspch1	6	GO:2000123: positive regulation of stomatal complex development.	 Vegetative organ - Leaf	Os06g0526100	LOC_Os06g33450.2, LOC_Os06g33450.1				GO:0010440 - stomatal lineage progression, GO:0010444 - guard mother cell differentiation, GO:0010377 - guard cell fate commitment, GO:0005634 - nucleus, GO:0010374 - stomatal complex development		
15346	BHLH55	OsbHLH055, bHLH055, bHLH55, OsMUTE, MUTE	BASIC HELIX-LOOP-HELIX PROTEIN 55	basic helix-loop-helix protein 055	BASIC HELIX-LOOP-HELIX PROTEIN 55	c-osmute	5		 Vegetative organ - Leaf	Os05g0597000	LOC_Os05g51820.1				GO:0010442 - guard cell morphogenesis, GO:0010444 - guard mother cell differentiation, GO:0010377 - guard cell fate commitment, GO:0010374 - stomatal complex development, GO:0005634 - nucleus		
15347	BHLH57	OsbHLH057, bHLH057, OsbHLH57, bHLH57, OsPRI4, PRI4	BASIC HELIX-LOOP-HELIX PROTEIN 57	basic helix-loop-helix protein 057, POSITIVE REGULATOR OF IRON HOMEOSTASIS 4	BASIC HELIX-LOOP-HELIX PROTEIN 57	osbhlh057, osbhlh057-1, osbhlh057-2	7	GO:1990641: response to iron ion starvation. TO:0006049: iron concentration. TO:1000060: shoot system iron content.	 Tolerance and resistance - Stress tolerance	Os07g0543000	LOC_Os07g35870.2, LOC_Os07g35870.1				GO:0055072 - iron ion homeostasis, GO:0042594 - response to starvation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000224 - iron sensitivity	PO:0020104 - leaf sheath , PO:0005645 - leaf mesophyll , PO:0025034 - leaf , PO:0000025 - root tip , PO:0020124 - root stele , PO:0020141 - stem node , PO:0005020 - vascular bundle , PO:0000036 - leaf vascular system , PO:0020121 - lateral root , PO:0030008 - root meristematic apical cell 
15348	BHLH58	OsbHLH058, bHLH058, bHLH58, OsPRI2, PRI2	BASIC HELIX-LOOP-HELIX PROTEIN 58	basic helix-loop-helix protein 058, POSITIVE REGULATOR OF IRON HOMEOSTASIS 2	BASIC HELIX-LOOP-HELIX PROTEIN 58		5	GO:1990641: response to iron ion starvation. TO:0020089: iron content trait.	 Tolerance and resistance - Stress tolerance	Os05g0455400	LOC_Os05g38140.1				GO:0042594 - response to starvation, GO:0055072 - iron ion homeostasis, GO:0005634 - nucleus	TO:0000224 - iron sensitivity	
15349	BHLH59	OsbHLH059, bHLH059, OsbHLH59, bHLH59, OsPRI3, PRI3	BASIC HELIX-LOOP-HELIX PROTEIN 59	basic helix-loop-helix protein 059, POSITIVE REGULATOR OF IRON HOMEOSTASIS 3	BASIC HELIX-LOOP-HELIX PROTEIN 59		2	HQ858854. bHLH transcription factor. GO:1990641: response to iron ion starvation. TO:0020089: iron content trait.	 Other,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os02g0116600	LOC_Os02g02480.3, LOC_Os02g02480.2, LOC_Os02g02480.1				GO:0055072 - iron ion homeostasis, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009611 - response to wounding, GO:0042594 - response to starvation	TO:0000326 - leaf color, TO:0000172 - jasmonic acid sensitivity, TO:0000224 - iron sensitivity	
15350	BHLH60	OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1, OsbHLH115, bHLH115	BASIC HELIX-LOOP-HELIX PROTEIN 60	basic helix-loop-helix protein 060, POSITIVE REGULATOR OF IRON HOMEOSTASIS1, POSITIVE REGULATOR OF IRON HOMEOSTASIS 1	BASIC HELIX-LOOP-HELIX PROTEIN 60	pri1, pri1-1, pri1-2, pri1-3	8	HQ858852. bHLH transcription factor. GO:1990641: response to iron ion starvation. OsbHLH115 in Kurt et al. 2019. PO:0030104: caryopsis fruit.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0138500	LOC_Os08g04390.2				GO:0055072 - iron ion homeostasis, GO:0042594 - response to starvation, GO:0005634 - nucleus	TO:0000224 - iron sensitivity	PO:0009049 - inflorescence , PO:0020031 - radicle , PO:0009084 - pericarp , PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0025281 - pollen , PO:0009082 - spikelet floret , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009005 - root 
15351	BHLH61	OsbHLH061, OsbHLH61, bHLH061, bHLH61	BASIC HELIX-LOOP-HELIX PROTEIN 61	basic helix-loop-helix protein 061	BASIC HELIX-LOOP-HELIX PROTEIN 61		11	GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance	Os11g0601700	LOC_Os11g38870.2, LOC_Os11g38870.1				GO:0046983 - protein dimerization activity, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0019740 - nitrogen utilization, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance, TO:0000153 - relative yield, TO:0000011 - nitrogen sensitivity	
15352	_	OsbHLH064	_	basic helix-loop-helix protein 064			2	HQ858850. bHLH transcription factor.	 Other,  Tolerance and resistance - Stress tolerance	Os02g0433600	LOC_Os02g23823.1, LOC_Os02g23823.2, LOC_Os02g23823.3				GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
15353	_	OsbHLH066	_	basic helix-loop-helix protein 066			3	HQ858876. bHLH transcription factor.	 Other	Os03g0759700	LOC_Os03g55220.1, LOC_Os03g55220.2				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15354	BHLH67	OsbHLH067, bHLH067, bHLH67, OsbHLH67	BASIC HELIX-LOOP-HELIX PROTEIN 67	basic helix-loop-helix protein 067	BASIC HELIX-LOOP-HELIX PROTEIN 67	Osbhlh067	5	PO:0030123: panicle inflorescence. GO:2000904: regulation of starch metabolic process.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle	Os05g0501200	LOC_Os05g42180.1				GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0005982 - starch metabolic process, GO:0005985 - sucrose metabolic process, GO:0010081 - regulation of inflorescence meristem growth	TO:0000621 - inflorescence development trait, TO:0000557 - secondary branch number, TO:0006032 - panicle size, TO:0000456 - spikelet number, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000547 - primary branch number, TO:0000625 - spikelet density	PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009105 - inflorescence branch meristem 
15355	BHLH68	OsbHLH068, bHLH068, bHLH68, OsbHLH68	BASIC HELIX-LOOP-HELIX PROTEIN 68	basic helix-loop-helix protein 068	BASIC HELIX-LOOP-HELIX PROTEIN 68	Osbhlh068	4	a homologous gene of AtbHLH112. GO:1901000: regulation of response to salt stress. GO:2000280: regulation of root development. PO:0030123: panicle inflorescence. GO:2000904: regulation of starch metabolic process.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0631600	LOC_Os04g53990.1				GO:0009414 - response to water deprivation, GO:2000028 - regulation of photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0005985 - sucrose metabolic process, GO:0010081 - regulation of inflorescence meristem growth, GO:0010229 - inflorescence development, GO:0010029 - regulation of seed germination, GO:0005634 - nucleus, GO:0005982 - starch metabolic process, GO:0010310 - regulation of hydrogen peroxide metabolic process	TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait, TO:0000456 - spikelet number, TO:0000657 - spikelet anatomy and morphology trait, TO:0000547 - primary branch number, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000625 - spikelet density, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002616 - flowering time	PO:0006327 - spikelet meristem , PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009105 - inflorescence branch meristem , PO:0009047 - stem , PO:0009049 - inflorescence 
15356	NSP1	OsbHLH069, bHLH069, bHLH69, OsbHLH69, OsNSP1	NO SPIKELET 1	basic helix-loop-helix protein 069, No Spikelet 1	BASIC HELIX-LOOP-HELIX PROTEIN 69	nsp1-D, Osbhlh069	1	PO:0030123: panicle inflorescence. GO:2000904: regulation of starch metabolic process. TO:0000970: panicle density.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0784900	LOC_Os01g57580.1				GO:0010081 - regulation of inflorescence meristem growth, GO:0005982 - starch metabolic process, GO:0005985 - sucrose metabolic process, GO:0005634 - nucleus, GO:0010229 - inflorescence development	TO:0000557 - secondary branch number, TO:0000346 - tiller number, TO:0000456 - spikelet number, TO:0000207 - plant height, TO:0000621 - inflorescence development trait, TO:0006032 - panicle size, TO:0000657 - spikelet anatomy and morphology trait, TO:0000547 - primary branch number, TO:0000625 - spikelet density	PO:0001083 - inflorescence development stage , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0006327 - spikelet meristem , PO:0009005 - root , PO:0009105 - inflorescence branch meristem 
15357	_	OsbHLH070	_	basic helix-loop-helix protein 070			8			Os08g0179400	LOC_Os08g08160.1						
15358	_	OsbHLH071, bHLH071, bHLH71	_	basic helix-loop-helix protein 071			1	LOC_Os01g01600. GO:0001046: core promoter sequence-specific DNA binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding.		Os01g0105700	LOC_Os01g01600.1				GO:0005634 - nucleus, GO:0006366 - transcription from RNA polymerase II promoter, GO:0046983 - protein dimerization activity		
15359	_	OsbHLH072	_	basic helix-loop-helix protein 072			2			Os02g0276900	LOC_Os02g17680.1						
15360	_	OsbHLH073, OsbHLH73, bHLH073	_	basic helix-loop-helix protein 073		osbhlh073-1, osbhlh073-D	5	PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os05g0228400	LOC_Os05g14010.1				GO:0010371 - regulation of gibberellin biosynthetic process, GO:0005634 - nucleus, GO:0080006 - internode patterning, GO:0010336 - gibberellic acid homeostasis, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000145 - internode length, TO:0000207 - plant height	PO:0020142 - stem internode 
15361	_	OsbHLH074	_	basic helix-loop-helix protein 074			1			Os01g0230200	LOC_Os01g13000.1				GO:0005634 - nucleus		
15362	_	OsbHLH075	_	basic helix-loop-helix protein 075			4			Os04g0565900	LOC_Os04g47810.1				GO:0005634 - nucleus		
15363	_	OsbHLH076	_	basic helix-loop-helix protein 076			2			Os02g0671300	LOC_Os02g45010.1						
15364	BHLH77	OsbHLH077, bHLH077, bHLH77, OsNRP1, NRP1	BASIC HELIX-LOOP-HELIX PROTEIN 77	basic helix-loop-helix protein 077, NEGATIVE REGULATOR OF PHOTOSYNTHESIS 1	BASIC HELIX-LOOP-HELIX PROTEIN 77		7	GO:0001216: DNA-binding transcription activator activity. GO:1905156: negative regulation of photosynthesis.	 Character as QTL - Yield and productivity	Os07g0471900	LOC_Os07g28890.1				GO:0015979 - photosynthesis, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000316 - photosynthetic ability, TO:0000457 - total biomass yield	
15365	_	OsbHLH078	_	basic helix-loop-helix protein 078			3			Os03g0279500	LOC_Os03g17130.1				GO:0003677 - DNA binding		
15366	BLR1	OsbHLH079, OsbHLH79, bHLH079, bHLH79, OsBLR1, OsBCL2, BCL2	BRASSINOSTEROID-RESPONSIVE LEAF ANGLE REGULATOR 1	basic helix-loop-helix protein 079, Basic Helix-Loop-Helix 79, OsBC1-Like2, BC1-Like 2	BASIC HELIX-LOOP-HELIX PROTEIN 79	blr1-D, blr1-1, blr1-2, blr1-3, osbhlh079-D, osbhlh079, osbhlh079-1, osbhlh079-2	2	an Ortholog of Arabidopsis CIB1 (CRYPTOCHROME-INTERACTING bHLH 1). GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. TO:0000821: leaf vein size. GO:0071555: cell wall organization. TO:0000993: cellulose content. GO:1900056: negative regulation of leaf senescence. GO:1903647: negative regulation of chlorophyll catabolic process.	 Coloration - Chlorophyll,  Other,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os02g0705500	LOC_Os02g47660.1				GO:0015996 - chlorophyll catabolic process, GO:0003700 - transcription factor activity, GO:0046983 - protein dimerization activity, GO:0043565 - sequence-specific DNA binding, GO:0048366 - leaf development, GO:0051512 - positive regulation of unidimensional cell growth, GO:0009742 - brassinosteroid mediated signaling, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009741 - response to brassinosteroid stimulus, GO:0030308 - negative regulation of cell growth, GO:0048573 - photoperiodism, flowering, GO:0010150 - leaf senescence, GO:0009734 - auxin mediated signaling pathway, GO:0001558 - regulation of cell growth, GO:0009737 - response to abscisic acid stimulus, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009646 - response to absence of light	TO:0002676 - brassinosteroid content, TO:0002677 - brassinosteroid sensitivity, TO:0000734 - grain length, TO:0000206 - leaf angle, TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0002675 - gibberellic acid content, TO:0002687 - cell elongation trait, TO:0002667 - abscisic acid content, TO:0001016 - relative chlorophyll content, TO:0002730 - grain shape, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000137 - days to heading, TO:0000655 - leaf development trait	PO:0009005 - root , PO:0001054 - 4 leaf senescence stage , PO:0020033 - coleoptile , PO:0009066 - anther , PO:0009073 - stigma , PO:0009037 - lemma , PO:0009036 - lodicule , PO:0009038 - palea 
15367	BHLH80	OsbHLH080, bHLH080, OsBCL1, BCL1	BASIC HELIX-LOOP-HELIX PROTEIN 80	basic helix-loop-helix protein 080, OsBC1-Like1, BC1-Like 1	BASIC HELIX-LOOP-HELIX PROTEIN 80		8		 Other	Os08g0536800	LOC_Os08g42470.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0009739 - response to gibberellin stimulus, GO:0051512 - positive regulation of unidimensional cell growth	TO:0000166 - gibberellic acid sensitivity, TO:0002675 - gibberellic acid content, TO:0002687 - cell elongation trait	PO:0009030 - carpel , PO:0009039 - glume , PO:0009064 - receptacle , PO:0009066 - anther , PO:0009036 - lodicule , PO:0009037 - lemma , PO:0009038 - palea 
15368	BHLH081	OsbHLH081, bHLH081, OsBC1, BC1	BASIC HELIX-LOOP-HELIX PROTEIN 81	basic helix-loop-helix protein 081, OsBUL1 COMPLEX1, BUL1 COMPLEX 1, BU1-LIKE 1 COMPLEX1, BU-LIKE1 COMPLEX1	BASIC HELIX-LOOP-HELIX PROTEIN 81		9		 Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits	Os09g0510500	LOC_Os09g33580.1, LOC_Os09g33580.2				GO:0009741 - response to brassinosteroid stimulus, GO:0051510 - regulation of unidimensional cell growth	TO:0000207 - plant height, TO:0002687 - cell elongation trait, TO:0002677 - brassinosteroid sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle, TO:0000397 - grain size	
15369	_	OsbHLH082	_	basic helix-loop-helix protein 082			9	LOC_Os09g33580.		Os09g0510500	LOC_Os09g33580.1, LOC_Os09g33580.2						
15370	BHLH083	OsbHLH083, bHLH083, CRPG311, OsCRPG311	BASIC HELIX-LOOP-HELIX PROTEIN 83	basic helix-loop-helix protein 083, collar region-preferential gene 311	BASIC HELIX-LOOP-HELIX PROTEIN 83		5	HQ858853. bHLH transcription factor. one of five transcription factors downstream of LG1 (Jiang et al. 2023).	 Other	Os05g0103000	LOC_Os05g01256.1, LOC_Os05g01256.2				GO:0003700 - transcription factor activity, GO:0046983 - protein dimerization activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		PO:0006012 - leaf collar 
15371	_	OsbHLH084	_	basic helix-loop-helix protein 084			3			Os03g0728900	LOC_Os03g51910.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
15372	_	OsbHLH085, DLN227, OsDLN227	_	basic helix-loop-helix protein 085, DLN repressor 227, DLN motif protein 227			9	HQ858863. bHLH transcription factor.	 Other	Os09g0474100	LOC_Os09g29830.3, LOC_Os09g29830.2, LOC_Os09g29830.1				GO:0005634 - nucleus		
15373	_	OsbHLH086, TA1	_	basic helix-loop-helix protein 086, Transcriptional Activator protein 1			6	HQ858872. bHLH transcription factor. AP003044. FJ581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species).	 Other	Os06g0275600	LOC_Os06g16400.1, LOC_Os06g16400.2, LOC_Os06g16400.3				GO:0005634 - nucleus		
15374	_	OsbHLH087	_	basic helix-loop-helix protein 087			8			Os08g0487700	LOC_Os08g38080.1				GO:0005634 - nucleus		
15375	_	OsbHLH088, OsFBO13, FBO13	_	basic helix-loop-helix protein 088, F-box-type E3 ubiquitin ligase O13			3	LOC_Os03g12940.		Os03g0231950	LOC_Os03g12940.1, LOC_Os03g12940.2				GO:0003677 - DNA binding		
15376	_	OsbHLH089, bHLH089, bHLH89	_	basic helix-loop-helix protein 089			3	LOC_Os03g58830. HQ858847. bHLH transcription factor.	 Other	Os03g0802900	LOC_Os03g58830.1				GO:0005634 - nucleus, GO:0048446 - petal morphogenesis		
15377	_	OsbHLH090	_	basic helix-loop-helix protein 090			1	AJ575238. HQ858864. bHLH transcription factor.	 Seed,  Other	Os01g0915600	LOC_Os01g68700.1, LOC_Os01g68700.2				GO:0005634 - nucleus	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15378	_	OsbHLH091, bHLH091	_	basic helix-loop-helix protein 091			8	HQ858869. bHLH transcription factor. PO:0030123: panicle inflorescence.	 Other	Os08g0524800	LOC_Os08g41320.1				GO:0005634 - nucleus		
15379	_	OsbHLH092	_	basic helix-loop-helix protein 092			9		 Tolerance and resistance - Stress tolerance	Os09g0501600	LOC_Os09g32510.1, LOC_Os09g32510.2, LOC_Os09g32510.3, LOC_Os09g32510.4, LOC_Os09g32510.5				GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
15380	_	OsbHLH094, bHLH094, bHLH94	_	basic helix-loop-helix protein 094			7	LOC_Os07g09590.		Os07g0193800	LOC_Os07g09590.1						
15381	_	OsbHLH095, bHLH095	_	basic helix-loop-helix protein 095			6	PO:0030123: panicle inflorescence.		Os06g0613500	LOC_Os06g41060.1						
15382	BHLH97	OsbHLH097, bHLH097, OsbHLH097	BASIC HELIX-LOOP-HELIX PROTEIN 97	basic helix-loop-helix protein 097	BASIC HELIX-LOOP-HELIX PROTEIN 97		2	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene.		Os02g0564700	LOC_Os02g35660.1				GO:0005634 - nucleus		
15383	BHLH98	OsbHLH098, bHLH098, bHLH98, OsbHLH98	BASIC HELIX-LOOP-HELIX PROTEIN 98	basic helix-loop-helix protein 098	BASIC HELIX-LOOP-HELIX PROTEIN 98	osbhlh98, osbhlh98-1, osbhlh98-2	3	HQ858867. bHLH transcription factor. a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene.	 Vegetative organ - Leaf,  Other	Os03g0797600	LOC_Os03g58330.1				GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus, GO:0042127 - regulation of cell proliferation, GO:0051510 - regulation of unidimensional cell growth, GO:0009741 - response to brassinosteroid stimulus, GO:0005737 - cytoplasm	TO:0002688 - leaf lamina joint bending, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle	PO:0000025 - root tip , PO:0005059 - root endodermis , PO:0025034 - leaf , PO:0006036 - root epidermis , PO:0009038 - palea , PO:0009037 - lemma , PO:0005772 - exodermis , PO:0005427 - sclerenchyma 
15384	_	OsbHLH099	_	basic helix-loop-helix protein 099			7	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os07g08440.		Os07g0182200	LOC_Os07g08440.1				GO:0031347 - regulation of defense response, GO:0009567 - double fertilization forming a zygote and endosperm		
15385	_	OsbHLH100	_	basic helix-loop-helix protein 100			9	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os09g25040.		Os09g0417400	LOC_Os09g25040.1				GO:0005634 - nucleus		
15386	BHLH101	OsbHLH101, bHLH101, OsPIF1, PIF1	BASIC HELIX-LOOP-HELIX PROTEIN 101	basic helix-loop-helix protein 101, phytochrome-interacting factor 1	BASIC HELIX-LOOP-HELIX PROTEIN 101		4	TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os04g0618600	LOC_Os04g52770.1				GO:0080006 - internode patterning, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus	TO:0000166 - gibberellic acid sensitivity, TO:0000544 - mesocotyl length	
15387	_	OsbHLH105	_	basic helix-loop-helix protein 105			1	LOC_Os01g18290 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0005634 - nucleus		
15388	LGS1	OsbHLH107, bHLH107	LARGER GRAIN SIZE 1	basic helix-loop-helix protein 107, larger grain size 1		lgs1	2	LOC_Os02g56140.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os02g0805250	LOC_Os02g56140.1				GO:0046983 - protein dimerization activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000396 - grain yield, TO:0000397 - grain size	
15389	SD6	OsbHLH108, OsbHLH108/SPT, bHLH108, SPT, OsSPT, OsSD6	SEED DORMANCY 6	basic helix-loop-helix protein 108, OsSPATULA, SPATULA, Seed Dormancy 6	BASIC HELIX-LOOP-HELIX PROTEIN 108		6	related to Arabidopsis SPATULA. GO:2000033: regulation of seed dormancy process. GO:1902265: abscisic acid homeostasis.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0164400	LOC_Os06g06900.1				GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010231 - maintenance of seed dormancy, GO:0010162 - seed dormancy, GO:0046345 - abscisic acid catabolic process, GO:0009266 - response to temperature stimulus, GO:0048437 - floral organ development	TO:0000432 - temperature response trait, TO:0000253 - seed dormancy, TO:0000622 - flower development trait	PO:0007615 - flower development stage , PO:0009049 - inflorescence 
15390	_	OsbHLH109, bHLH109	_	basic helix-loop-helix protein 109			1	HQ858859. HQ858868. bHLH transcription factor.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0900800	LOC_Os01g67480.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
15391	_	OsbHLH110	_	basic helix-loop-helix protein 110			2		 Tolerance and resistance - Stress tolerance	Os02g0603600	LOC_Os02g39140.1, LOC_Os02g39140.2				GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
15392	SGI1	OsbHLH111, bHLH111, HBP1, OsHBP1, OsSGI1	STARVATION- ASSOCIATED GROWTH INHIBITOR 1	basic helix-loop-helix protein 111, Hd1 Binding Protein 1, starvation- associated growth inhibitor 1	BASIC HELIX-LOOP-HELIX PROTEIN 111	sgi1-1, sgi1-2, sgi1-3	4	GO:1905614: negative regulation of developmental vegetative growth. TO:0000975: grain width.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date,  Vegetative organ - Root	Os04g0489600	LOC_Os04g41229.1, LOC_Os04g41229.2				GO:0031667 - response to nutrient levels, GO:0005634 - nucleus, GO:0010468 - regulation of gene expression, GO:0009299 - mRNA transcription, GO:0043617 - cellular response to sucrose starvation, GO:0045926 - negative regulation of growth, GO:0051093 - negative regulation of developmental process, GO:0042594 - response to starvation, GO:0033500 - carbohydrate homeostasis, GO:0048573 - photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005975 - carbohydrate metabolic process, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0010182 - sugar mediated signaling, GO:0010187 - negative regulation of seed germination	TO:0000442 - plant fresh weight, TO:0000084 - root number, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000300 - glucose content, TO:0006005 - fructose content, TO:0000480 - nutrient sensitivity, TO:0000328 - sucrose content, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000357 - growth and development trait, TO:0000430 - germination rate, TO:0000227 - root length	
15393	_	OsbHLH113, bHLH113	_	basic helix-loop-helix protein 113			10		 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os10g0556200	LOC_Os10g40740.1				GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0000207 - plant height	
15394	_	OsbHLH114	_	basic helix-loop-helix protein 114			2	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene. LOC_Os02g55250.		Os02g0795800	LOC_Os02g55250.1						
15395	RHL1	OsbHLH115, bHLH115, OsRHL1	ROOTHAIRLESS1	basic helix-loop-helix protein 115, ROOTHAIRLESS 1	BASIC HELIX-LOOP-HELIX PROTEIN 115	Osrhl1-1, Osrhl1-2, osrhl1, rhl1, rhl1-1	6	a LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) gene.	 Vegetative organ - Root	Os06g0184000	LOC_Os06g08500.1				GO:0005737 - cytoplasm, GO:0010540 - basipetal auxin transport, GO:0048767 - root hair elongation, GO:0005634 - nucleus	TO:0000656 - root development trait, TO:0002685 - crown root number, TO:0002665 - root hair length, TO:0002667 - abscisic acid content	PO:0007519 - 5 root hair formation stage 
15396	BHLH116	OsbHLH116, bHLH116	BASIC HELIX-LOOP-HELIX PROTEIN 116	basic helix-loop-helix protein 116	BASIC HELIX-LOOP-HELIX PROTEIN 116		12			Os12g0599400/Os12g0599550	LOC_Os12g40730.1						
15397	BHLH117	OsbHLH117, bHLH117	BASIC HELIX-LOOP-HELIX PROTEIN 117	basic helix-loop-helix protein 117	BASIC HELIX-LOOP-HELIX PROTEIN 117		1			Os01g0566800	LOC_Os01g38610.1				GO:0046983 - protein dimerization activity		
15398	_	OsbHLH118	_	basic helix-loop-helix protein 118			1			Os01g0707500	LOC_Os01g51140.1, LOC_Os01g51140.2				GO:0005634 - nucleus		
15399	 BHLH120	OsbHLH120, bHLH120	BASIC HELIX-LOOP-HELIX PROTEIN 120	basic helix-loop-helix protein 120	BASIC HELIX-LOOP-HELIX PROTEIN 120		9	qRT9 (a quantitative trait locus controlling root thickness and root length) candidate.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os09g0455300	LOC_Os09g28210.1				GO:0009651 - response to salt stress, GO:0010500 - transmitting tissue development, GO:0048462 - carpel formation, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0080126 - ovary septum development, GO:0009414 - response to water deprivation	TO:0000306 - root thickness, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
15400	_	OsbHLH121	_	basic helix-loop-helix protein 121			8	LOC_Os08g36740.		Os08g0471401	LOC_Os08g36740.1				GO:0080126 - ovary septum development, GO:0048462 - carpel formation, GO:0010500 - transmitting tissue development		
15401	_	OsbHLH122	_	basic helix-loop-helix protein 122			6			Os06g0210600	LOC_Os06g10820.1						
15402	_	OsbHLH124	_	basic helix-loop-helix protein 124			8			Os08g0108500	LOC_Os08g01700.1						
15403	_	OsbHLH125, bHLH125, OsRSL1, RSL1	_	basic helix-loop-helix protein 125, ROOT HAIR DEFECTIVE-SIX LIKE 1		Osrsl1, Osrsl1-1	1	HQ858858. bHLH transcription factor. an RSL class I gene.	 Other,  Vegetative organ - Root	Os01g0111500	LOC_Os01g02110.1				GO:0048767 - root hair elongation, GO:0048765 - root hair cell differentiation	TO:0002665 - root hair length	
15404	_	OsbHLH126, bHLH126, OsRSL2, RSL2	_	basic helix-loop-helix protein 126, ROOT HAIR DEFECTIVE-SIX LIKE 2		Osrsl2, Osrsl2-1	2	an RSL class I gene.	 Vegetative organ - Root	Os02g0710300	LOC_Os02g48060.1				GO:0048767 - root hair elongation, GO:0048765 - root hair cell differentiation	TO:0002665 - root hair length	
15405	BHLH127	OsbHLH127, bHLH127, OsRSL3, RSL3	BASIC HELIX-LOOP-HELIX PROTEIN 127	basic helix-loop-helix protein 127, ROOT HAIR DEFECTIVE-SIX LIKE 3	BASIC HELIX-LOOP-HELIX PROTEIN 127		6	an RSL class I gene. associated with root median metaxylem diameter.	 Vegetative organ - Root	Os06g0496400	LOC_Os06g30090.1				GO:0048767 - root hair elongation, GO:0005634 - nucleus, GO:0048765 - root hair cell differentiation	TO:0002665 - root hair length, TO:0000043 - root anatomy and morphology trait	
15406	_	OsbHLH128, bHLH128, OsRSL6, RSL6, DLN190, OsDLN190	_	basic helix-loop-helix protein 128, ROOT HAIR DEFECTIVE-SIX LIKE 6, DLN repressor 190, DLN motif protein 190			7	RSL4 (ROOT HAIR DEFECTVE SIX-LIKE 4) ortholog. RSL (Root Hair Defective-Six Like) Class II Transcription Factor. TO:0001051: root hair density. GO:0035618: root hair.	 Vegetative organ - Root	Os07g0588400	LOC_Os07g39940.1	GR:0020266			GO:0010015 - root morphogenesis, GO:0005634 - nucleus, GO:0048767 - root hair elongation	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
15407	_	OsbHLH129, bHLH129, OsRSL4, RSL4, DLN79, OsDLN79	_	basic helix-loop-helix protein 129, ROOT HAIR DEFECTIVE-SIX LIKE 4, DLN repressor 79, DLN motif protein 79			3	RSL (Root Hair Defective-Six Like) Class II Transcription Factor. GO:0035618: root hair.		Os03g0205300	LOC_Os03g10770.1				GO:0003677 - DNA binding		
15408	_	OsbHLH130, bHLH130, OsRSL9, RSL9, DLN264, OsDLN264	_	basic helix-loop-helix protein 130, ROOT HAIR DEFECTIVE-SIX LIKE 9, DLN repressor 264, DLN motif protein 264			12	RSL4 (ROOT HAIR DEFECTVE SIX-LIKE4) ortholog. RSL (Root Hair Defective-Six Like) Class II Transcription Factor. GO:0035618: root hair.	 Vegetative organ - Root	Os12g0589000	LOC_Os12g39850.1				GO:0010015 - root morphogenesis, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0048767 - root hair elongation	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
15409	_	OsbHLH131, bHLH131, OsRSL5, RSL5, DLN93, OsDLN93	_	basic helix-loop-helix protein 131, ROOT HAIR DEFECTIVE-SIX LIKE 5, DLN repressor 93, DLN motif protein 93			3	RSL (Root Hair Defective-Six Like) Class II Transcription Factor. GO:0035618: root hair.	 Vegetative organ - Root		LOC_Os03g42100.1				GO:0048767 - root hair elongation, GO:0010015 - root morphogenesis, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
15410	_	OsbHLH132, bHLH132, OsRSL7, RSL7	_	basic helix-loop-helix protein 132, ROOT HAIR DEFECTIVE-SIX LIKE 7			11	 RSL (Root Hair Defective-Six Like) Class II Transcription Factor. GO:0035618: root hair.	 Vegetative organ - Root	Os11g0634700	LOC_Os11g41640.1				GO:0010015 - root morphogenesis, GO:0048767 - root hair elongation, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
15411	_	OsbHLH134, bHLH134, DLN100, OsDLN100	_	basic helix-loop-helix protein 134, DLN repressor 100, DLN motif protein 100			3	RSL (Root Hair Defective-Six Like) Class II Transcription Factor. GO:0035618: root hair.		Os03g0764200	LOC_Os03g55550.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15412	_	OsbHLH135	_	basic helix-loop-helix protein 135			12			Os12g0597800	LOC_Os12g40590.1						
15413	_	OsbHLH136	_	basic helix-loop-helix protein 136			12			Os12g0599000	LOC_Os12g40710.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15414	_	OsbHLH137	_	basic helix-loop-helix protein 137			12			Os12g0598200	LOC_Os12g40630.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
15415	_	OsbHLH138, bHLH138, OsPIF4, PIF4, OsSACL2, SACL2	_	basic helix-loop-helix protein 138, Phytochrome-interacting factor 4			3	a member of the SAC51 family. GO:1904583: response to polyamine macromolecule.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os03g0391700	LOC_Os03g27390.2, LOC_Os03g27390.1				GO:0009266 - response to temperature stimulus, GO:0046983 - protein dimerization activity, GO:0005634 - nucleus	TO:0000067 - genic male sterility-thermo sensitive, TO:0000432 - temperature response trait	
15416	_	OsbHLH139, bHLH139, OsSACL3B, SACL3B	_	basic helix-loop-helix protein 139			2	a member of the SAC51 family. GO:1904583: response to polyamine macromolecule.		Os02g0315600	LOC_Os02g21090.3, LOC_Os02g21090.2, LOC_Os02g21090.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity, GO:0005634 - nucleus		
15417	_	OsbHLH140	_	basic helix-loop-helix protein 140			3			Os03g0591300	LOC_Os03g39432.1, LOC_Os03g39432.2						
15418	BHLH142	OsbHLH142, bHLH142, TIP2, OsTIP2, TIP2/TDR/bHLH142	BASIC HELIX-LOOP-HELIX PROTEIN 142	basic helix-loop-helix protein 142, TDR INTERACTING PROTEIN2, TDR Interacting Protein 2	BASIC HELIX-LOOP-HELIX PROTEIN 142	ms142, tip2, bhlh142	1		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os01g0293100	LOC_Os01g18870.1				GO:0048653 - anther development, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0009555 - pollen development, GO:0080110 - sporopollenin biosynthetic process, GO:0043067 - regulation of programmed cell death, GO:0048654 - anther morphogenesis	TO:0000106 - male sterility type, TO:0000214 - anther shape, TO:0000053 - pollen sterility, TO:0000259 - heat tolerance	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
15419	BHLH143	OsbHLH143, OsbHLH130, bHLH130	BASIC HELIX-LOOP-HELIX PROTEIN 143	basic helix-loop-helix protein 143, bHLH transcription factor 130	BASIC HELIX-LOOP-HELIX PROTEIN 143		9	OsbHLH130 in Gu et al. 2021. GO:1904278: positive regulation of wax biosynthetic process.	 Tolerance and resistance - Stress tolerance	Os09g0487900	LOC_Os09g31300.1, LOC_Os09g31300.2				GO:0009414 - response to water deprivation, GO:0030104 - water homeostasis	TO:0000276 - drought tolerance	
15420	BHLH144	OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1	BASIC HELIX-LOOP-HELIX PROTEIN 144	basic helix-loop-helix protein 144, endosperm-specific gene 65, ZHOUPI 1	BASIC HELIX-LOOP-HELIX PROTEIN 144	crbhlh144, crbhlh144-2, crbhlh144-3, crbhlh144-4, bhlh144	4	rice ortholog of AtZOU (AtZHOUPI). PO:0030104: caryopsis fruit. GO:2000033: regulation of seed dormancy process. TO:0001069: cooking quality trait.	 Character as QTL - Grain quality,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Germination,  Seed - Physiological traits - Dormancy,  Reproductive organ - Pollination, fertilization, fertility	Os04g0429400	LOC_Os04g35010.1				GO:0009960 - endosperm development, GO:0048623 - seed germination on parent plant, GO:0010162 - seed dormancy, GO:0042335 - cuticle development, GO:0048316 - seed development, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009790 - embryonic development, GO:0010581 - regulation of starch biosynthetic process	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0002681 - leaf curling, TO:0000370 - leaf width, TO:0020034 - glume width, TO:0002627 - fruit width, TO:0000420 - fertility related trait, TO:0000409 - peak viscosity, TO:0000408 - hot paste viscosity, TO:0000379 - cool paste viscosity, TO:0000162 - seed quality, TO:0000619 - vivipary, TO:0000462 - gelatinization temperature, TO:0000211 - gel consistency, TO:0000266 - chalky endosperm, TO:0000696 - starch content, TO:0000253 - seed dormancy, TO:0000196 - amylose content, TO:0000604 - fat and essential oil content	PO:0009010 - seed , PO:0007633 - endosperm development stage , PO:0009089 - endosperm , PO:0001170 - seed development stage 
15421	_	OsbHLH145	_	basic helix-loop-helix protein 145			4			Os04g0429300	LOC_Os04g35000.1						
15422	_	OsbHLH146, bHLH146, OsZOU-2, OsZOU2, ZOU-2, ZOU2	_	basic helix-loop-helix protein 146, ZHOUPI 2			2	LOC_Os02g34320. rice homolog of AtZOU (AtZHOUPI).		Os02g0547600	LOC_Os02g34320.1						PO:0025034 - leaf , PO:0009047 - stem 
15423	_	OsbHLH147, bHLH147	_	basic helix-loop-helix protein 147			2			Os02g0548100	LOC_Os02g34370.1				GO:0005634 - nucleus		PO:0009010 - seed 
15424	_	OsbHLH149, bHLH149, DLN30, OsDLN30, OsMYC4, MYC4	_	basic helix-loop-helix protein 149, DLN repressor 30, DLN motif protein 30, Myelocytomatosis oncogene transcription factor 4			1			Os01g0865600	LOC_Os01g64560.2, LOC_Os01g64560.1				GO:0048364 - root development, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		PO:0009047 - stem 
15425	_	OsbHLH150	_	basic helix-loop-helix protein 150			12			Os12g0160400	LOC_Os12g06330.1, LOC_Os12g06330.2, LOC_Os12g06335.1						
15426	_	OsbHLH151	_	basic helix-loop-helix protein 151			11			Os11g0158500	LOC_Os11g06010.1						
15427	FIT	OsbHLH156, OsFIT/OsbHLH156, OsFIT, bHLH156, OsIROP1, IROP1	FER-LIKE FE DEFICIENCY-INDUCED TRANSCRIPTION FACTOR	basic helix-loop-helix protein 156		fit, fit-1, fit-2, bhlh156, osbhlh156-1, osbhlh156-2, osbhlh156-3	4	GO:1990641: response to iron ion starvation. TO:0006060: leaf chlorosis. TO:0006049: iron concentration.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0381700	LOC_Os04g31290.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0040007 - growth, GO:0055072 - iron ion homeostasis, GO:0042594 - response to starvation, GO:0005737 - cytoplasm	TO:0000357 - growth and development trait, TO:0000326 - leaf color, TO:0000224 - iron sensitivity	PO:0009005 - root 
15428	_	OsbHLH157, bHLH157	_	basic helix-loop-helix protein 157			2	PO:0030123: panicle inflorescence.		Os02g0178700	LOC_Os02g08220.1				GO:0005634 - nucleus		
15429	_	OsbHLH158. bHLH158	_	basic helix-loop-helix protein 158			6		 Tolerance and resistance - Stress tolerance	Os06g0653200	LOC_Os06g44320.1				GO:0005634 - nucleus, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
15430	_	OsbHLH159	_	basic helix-loop-helix protein 159			5			Os05g0157400	LOC_Os05g06520.1						
15431	_	OsbHLH160, bHLH160, SIP19, OsSIP19	_	basic helix-loop-helix protein 160, SKIP interacting protein 19, SKIPa-interacting protein 19, SKIPa-interacting protein 19			11	EU368709. LOC_Os11g02054. Ubiquitin-ligase complex protein. 	 Biochemical character	Os11g0111800	LOC_Os11g02054.1						PO:0009005 - root 
15432	_	OsbHLH161	_	basic helix-loop-helix protein 161			12			Os12g0111400	LOC_Os12g02020.1				GO:0005634 - nucleus		
15433	_	OsbHLH162, bHLH162	_	basic helix-loop-helix protein 162			5			Os05g0337200	LOC_Os05g27090.1				GO:0005634 - nucleus, GO:0016597 - amino acid binding, GO:0008152 - metabolic process		PO:0009005 - root 
15434	_	OsbHLH163, bHLH163, OsHLH61, HLH61	_	basic helix-loop-helix protein 163, helix-loop-helix protein 61			7		 Tolerance and resistance - Insect resistance	Os07g0676600	LOC_Os07g47960.1				GO:0002213 - defense response to insect, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance	
15436	_	OsbHLH166, bHLH166	_	basic helix-loop-helix protein 166			3			Os03g0338400	LOC_Os03g21970.1				GO:0005634 - nucleus		PO:0009005 - root 
15437	_	OsbHLH167	_	basic helix-loop-helix protein 167			9			Os09g0519100	LOC_Os09g34330.1				GO:0005634 - nucleus		
15438	_	OsDSR1	_	DUF966-stress repressive gene 1			1		 Tolerance and resistance - Stress tolerance	Os01g0778100	LOC_Os01g57020.1						
15439	DSR2	OsDSR2	DUF966-STRESS REPRESSIVE GENE 2	DUF966-stress repressive gene 2	DUF966-STRESS REPRESSIVE PROETIN 2		1	GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0839200	LOC_Os01g62200.1, LOC_Os01g62200.2				GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress	TO:0000203 - bacterial leaf streak disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000253 - seed dormancy, TO:0006001 - salt tolerance	
15440	_	OsDSR3	_	DUF966-stress repressive gene 3			1		 Tolerance and resistance - Stress tolerance	Os01g0975000	LOC_Os01g74370.1						
15441	_	OsDSR4	_	DUF966-stress repressive gene 4			3		 Tolerance and resistance - Stress tolerance	Os03g0192300	LOC_Os03g09200.1						
15442	_	OsDSR5	_	DUF966-stress repressive gene 5			3		 Tolerance and resistance - Stress tolerance	Os03g0692400	LOC_Os03g48600.1, LOC_Os03g48600.11, LOC_Os03g48600.12, LOC_Os03g48600.2, LOC_Os03g48600.3, LOC_Os03g48600.5, LOC_Os03g48600.6, LOC_Os03g48600.7, LOC_Os03g48600.8, LOC_Os03g48600.9				GO:0005886 - plasma membrane		
15443	_	OsDSR6	_	DUF966-stress repressive gene 6			8		 Tolerance and resistance - Stress tolerance	Os08g0561600	LOC_Os08g44760.1, LOC_Os08g44760.2, LOC_Os08g44760.3						
15444	_	OsDSR7	_	DUF966-stress repressive gene 7			9		 Tolerance and resistance - Stress tolerance	Os09g0571000	LOC_Os09g39750.1						
15445	_	OsGAPDHA, OsGAPDH4	_	chloroplastic glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic GAPDH A subunit					 Biochemical character								
15446	_	OsGAPDH1	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic GAPDH 1					 Biochemical character								
15447	_	OsGAPDH2	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic GAPDH 2					 Biochemical character								
15448	_	OsGAPDH5	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 5, cytosolic GAPDH 5					 Biochemical character								
15449	_	OsGAPDH6	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 6, cytosolic GAPDH 6					 Biochemical character								
15450	_	OsGAPDH7	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 7, cytosolic GAPDH 7					 Biochemical character								
15451	_	OsGAPDH8, NP-GAPDH	_	cytosolic glyceraldehyde-3-phosphate dehydrogenase 8, cytosolic GAPDH 8, non-phosphorylated GAPDH					 Biochemical character								
15452	_	OsGZF1	_	GluB-1-binding Zinc Finger 1			7	KF289071.	 Seed - Physiological traits - Storage substances	Os07g0668600	LOC_Os07g47240.1				GO:0046872 - metal ion binding	TO:0000490 - protein composition related trait	
15453	ECA2	OsECA2, OsER3ATP3	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE2	endoplasmic reticulum-type Ca2+ P-Type ATPase 2	ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE2		3	GO:0071421: manganese ion transmembrane transport.	 Biochemical character	Os03g0730800	LOC_Os03g52090.1				GO:0005794 - Golgi apparatus, GO:0005802 - trans-Golgi network, GO:0006200 - ATP catabolic process, GO:0070588 - calcium ion transmembrane transport, GO:0055071 - manganese ion homeostasis, GO:0048364 - root development, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0015410 - manganese-transporting ATPase activity, GO:0005388 - calcium-transporting ATPase activity, GO:0005524 - ATP binding		
15454	CAX4	CAX2, OsCAX2, OsCAX4, OsSTA47, OsNCX3, NCX3	Ca(2+)/H(+) EXCHANGER 4	Vacuolar cation/proton exchanger 2, Ca(2+)/H(+) exchanger 2, cation/H+ exchanger 2, vacuolar cation/H+ exchanger 4, Na+/Ca2+ Exchanger 3, Sodium/calcium exchanger 3, cation exchanger 4	Ca(2+)/H(+) EXCHANGER 4		2	Q6YXZ1. AB859021. OsCAX4 in Yamada et al. 2014, Singh et al. 2015 (pmid: 25869323), Pittman and Hirschi 2016, Zou et al. 2021. a mature anther-preferentially expressed gene. Oryza barthii: ObarCAX4: OBART02G03190, Oryza brachyantha: ObraCAX4: OB02G12870, Oryza glaberrima: OglaCAX4: ORGLA02G0030100, Oryza glumipatula: OgluCAX4: OGLUM02G03090, Oryza longistaminata: OlCAX4: OlongScf20449, Oryza meridionalis: OmCAX4: OMERI02G03850, Oryza nivara: OnCAX4: ONIVA02G03000, Oryza punctata: OpCAX4: OPUNC02G02520, Oryza rufipogon: OrCAX4: ORUFI02G03120. GO:0035864: response to potassium ion. TO:0006059: cadmium content trait. PO:0030123: panicle inflorescence. GO:1902600: hydrogen ion transmembrane transport.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0138900	LOC_Os02g04630.1				GO:0009753 - response to jasmonic acid stimulus, GO:0070588 - calcium ion transmembrane transport, GO:0009411 - response to UV, GO:0006828 - manganese ion transport, GO:0015369 - calcium:hydrogen antiporter activity, GO:0051592 - response to calcium ion, GO:0015691 - cadmium ion transport, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0055073 - cadmium ion homeostasis, GO:0005886 - plasma membrane, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009705 - plant-type vacuole membrane	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0002657 - oxidative stress	PO:0020121 - lateral root , PO:0009005 - root , PO:0020127 - primary root , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0025034 - leaf 
15455	CAX7	OsCAX7, OsNCX12, NCX12, OsNaCa11exA	Ca(2+)/H(+) EXCHANGER 7	Vacuolar cation/proton exchanger 7, Ca(2+)/H(+) exchanger 7, cation/H+ exchanger 7, Na+/Ca2+ Exchanger 12, Sodium/calcium exchanger 12	Ca(2+)/H(+) EXCHANGER 7		11	LOC_Os11g01580. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0107266	LOC_Os11g01580.1				GO:0009411 - response to UV, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane	TO:0000160 - UV light sensitivity	
15456	CAX8	OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5, CCX5_Ath	Ca(2+)/H(+) EXCHANGER 8	Vacuolar cation/proton exchanger 8, Ca(2+)/H(+) exchanger 8, cation/H+ exchanger 8, Na+/Ca2+ Exchanger 13, Sodium/calcium exchanger 13	Ca(2+)/H(+) EXCHANGER 8		11	LOC_Os11g05070. Oryza barthii: ObarCCX5: OBART11G03080 (probably partial length sequence), Oryza brachyantha: ObraCCX5: OB11G12360 (only partial length sequence available), Oryza glaberrima: OglaCCX5: ORGLA11G0028100, Oryza glumipatula: OgluCCX5: OGLUM11G02700 (only partial length sequence available), Oryza longistaminata: OlCCX5: OLONG_000677 (only partial length sequence available), Oryza meridionalis: OmCCX5: OMERI11G02830, Oryza nivara: OnCCX5: ONIVA11G03470, Oryza punctata: OpCCX5: OPUNC11G02690 (only partial length sequence available), Oryza rufipogon: OrCCX5: ORUFI11G02920.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0148000	LOC_Os11g05070.1				GO:0016021 - integral to membrane, GO:0015081 - sodium ion transmembrane transporter activity, GO:0015079 - potassium ion transmembrane transporter activity, GO:0034399 - nuclear periphery, GO:0009411 - response to UV, GO:0010163 - high-affinity potassium ion import, GO:0009651 - response to salt stress	TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
15457	CCX1	OsCCX1, OsNCX6, NCX6	CATION/CA2+ EXCHANGER 1	cation/Ca2+ exchanger 1, Na+/Ca2+ Exchanger 6, Sodium/calcium exchanger 6			3	LOC_Os03g08230. Oryza barthii: ObarCCX1: OBART03G05850, Oryza brachyantha: ObraCCX1: OB03G15940, Oryza glaberrima: OglaCCX1: ORGLA03G0056400, Oryza glumipatula: OgluCCX1: OGLUM03G05850, Oryza longistaminata: OlCCX1: OLONG_002428, Oryza meridionalis: OmCCX1: OMERI03G05690, Oryza nivara: OnCCX1: ONIVA03G05830, Oryza punctata: OpCCX1: OPUNC03G05640, Oryza rufipogon: OrCCX1: ORUFI03G05670.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0180000	LOC_Os03g08230.1				GO:0009411 - response to UV, GO:0005384 - manganese ion transmembrane transporter activity, GO:0030659 - cytoplasmic vesicle membrane, GO:0016021 - integral to membrane, GO:0015081 - sodium ion transmembrane transporter activity, GO:0051592 - response to calcium ion, GO:0043157 - response to cation stress, GO:0015079 - potassium ion transmembrane transporter activity, GO:0030003 - cellular cation homeostasis, GO:0012505 - endomembrane system	TO:0000160 - UV light sensitivity	
15458	CCX3	OsCCX3, OsNCX11, NCX11	CATION/CA2+ EXCHANGER 3	cation/Ca2+ exchanger 3, Na+/Ca2+ Exchanger 11, Sodium/calcium exchanger 11			10	LOC_Os10g30070. Oryza barthii: ObarCCX3: ABRL00000000 (only partial length sequence available), Oryza brachyantha: ObraCCX3: OB10G18460 (only partial length sequence available), Oryza glaberrima: OglaCCX3: agi1.1 (only partial length sequence available), Oryza glumipatula: OgluCCX3: OGLUM10G10820 (probably partial length sequence), Oryza longistaminata: OlCCX3: OLONG_007999 (only partial length sequence available), Oryza meridionalis: OmCCX3: OMERI04G07010, Oryza nivara: OnCCX3: ONIVA10G10070, Oryza punctata: OpCCX3: OPUNC10G09490, Oryza rufipogon: OrCCX3: ORUFI10G11590 (probably partial length sequence).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0436900	LOC_Os10g30070.1				GO:0051592 - response to calcium ion, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009411 - response to UV, GO:0055085 - transmembrane transport	TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance	
15459	CCX4	OsCCX4, OsNCX15, NCX15	CATION/CA2+ EXCHANGER 4	cation/Ca2+ exchanger 4, Na+/Ca2+ Exchanger 15, Sodium/calcium exchanger 15			12	LOC_Os12g42910. Oryza barthii: ObarCCX4: ABRL00000000 (only partial length sequence available), Oryza brachyantha: ObraCCX4: OB12G26160 (probably partial length sequence), Oryza glaberrima: OglaCCX4: ORGLA12G0166400, Oryza glumipatula: OgluCCX4: OGLUM12G21030, Oryza longistaminata: OlCCX4: OLONG_004463 (only partial length sequence available), Oryza meridionalis: OmCCX4: OMERI12G14430, Oryza nivara: OnCCX4: ONIVA12G18230, Oryza punctata: OpCCX4: OPUNC12G17520, Oryza rufipogon: OrCCX4: ORUFI12G21590.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0624200	LOC_Os12g42910.1				GO:0009414 - response to water deprivation, GO:0051592 - response to calcium ion, GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
15460	_	OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1	_	EF-hand containing H+/cation exchanger 1, EF-hand containing CAX 1, Na+/Ca2+ Exchanger 1, Sodium/Calcium exchanger 1, Na+/Ca2+ exchanger-like protein 1			1	GO:0035725: sodium ion transmembrane transport. LOC_Os01g11414. Oryza barthii: ObarNCL1: OBART01G07170, Oryza brachyantha: ObraNCL1: OB01G17150, Oryza glumipatula: OgluNCL1: OGLUM01G08060, Oryza longistaminata: OlNCL1: OLONG_003090, Oryza meridionalis: OmNCL1: OMERI01G07070, Oryza nivara: OnNCL1: ONIVA01G09210, Oryza punctata: OpNCL1: OPUNC01G06870, Oryza rufipogon: OrNCL1: ORUFI01G07720.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0212400	LOC_Os01g11414.1, LOC_Os01g11414.2				GO:0016021 - integral to membrane, GO:0051592 - response to calcium ion, GO:0055074 - calcium ion homeostasis, GO:0005432 - calcium:sodium antiporter activity, GO:0005509 - calcium ion binding, GO:0000325 - plant-type vacuole, GO:0009411 - response to UV, GO:0009409 - response to cold, GO:0009506 - plasmodesma, GO:0005774 - vacuolar membrane, GO:0071472 - cellular response to salt stress, GO:0070588 - calcium ion transmembrane transport	TO:0000303 - cold tolerance, TO:0000160 - UV light sensitivity	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root 
15461	_	OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2	_	EF-hand containing H+/cation exchanger 2, EF-hand containing CAX 2, Na+/Ca2+ Exchanger 4, Sodium/calcium exchanger 4, Na+/Ca2+ exchanger-like protein 2			2	GO:0035725: sodium ion transmembrane transport. LOC_Os02g14980. Oryza barthii: ObarNCL2: OBART02G10580, Oryza brachyantha: ObraNCL2: OB02G19370, Oryza glaberrima: OglaNCL2: ORGLA02G0095100, Oryza glumipatula: OgluNCL2: OGLUM02G10510, Oryza longistaminata: OlNCL2: OLONG_018730, Oryza meridionalis: OmNCL2: OMERI02G11440, Oryza nivara: OnNCL2: ONIVA02G11690, Oryza punctata: OpNCL2: OPUNC02G09420, Oryza rufipogon: OrNCL2: ORUFI02G10510.	 Biochemical character	Os02g0247800	LOC_Os02g14980.1, LOC_Os02g14980.2						
15462	_	OsMHX1, MHX1, OsMHX2, MHX2	_	Mg2+/H+ exchanger 1, magnesium/hydrogen exchanger 1			2	Q6H641. LOC_Os02g43110. OsMHX2 in Pittman and Hirschi 2016. Oryza barthii: ObarMHX2: OBART02G25830, Oryza glaberrima: OglaMHX2: ORGLA02G0221000 (probably partial length sequence), Oryza nivara: OnMHX2: ONIVA02G28280 (probably partial length sequence), Oryza rufipogon: OrMHX2: ORUFI02G27220 (probably partial length sequence).	 Biochemical character	Os02g0644900	LOC_Os02g43110.1				GO:0006826 - iron ion transport, GO:0015693 - magnesium ion transport, GO:0005774 - vacuolar membrane, GO:0006829 - zinc ion transport, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
15463	_	NCKX1	_	Na/Ca-K exchanger 1			3	LOC_Os03g01330	 Biochemical character		LOC_Os03g01330						
15464	ANN1	OsANN1	ANNEXIN 1	Annexin 1	ANNEXIN 1		1		 Biochemical character	Os01g0497400	LOC_Os01g31270.1				GO:0005544 - calcium-dependent phospholipid binding, GO:0005509 - calcium ion binding		
15465	ANN2	OsANN2, OsANN1, ANN1	ANNEXIN 2	Annexin 2, annexin 1	ANNEXIN 2		2	LOC_Os02g51750. GO:0071435: potassium ion export. OsANN1 in Qiao et al. 2015. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0753800	LOC_Os02g51750.1, LOC_Os02g51750.2				GO:0009506 - plasmodesma, GO:0005774 - vacuolar membrane, GO:0005524 - ATP binding, GO:0005507 - copper ion binding, GO:0004601 - peroxidase activity, GO:0008270 - zinc ion binding, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0016887 - ATPase activity, GO:0046686 - response to cadmium ion, GO:0005829 - cytosol, GO:0009570 - chloroplast stroma, GO:0005618 - cell wall, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0009737 - response to abscisic acid stimulus, GO:0055114 - oxidation reduction, GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding, GO:0070588 - calcium ion transmembrane transport, GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0009579 - thylakoid	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
15466	ANN3	OsANN3, OsANN4, ANN4	ANNEXIN 3	Annexin 3	ANNEXIN 3		5	an ortholog of AtANN4. OsANN4 in Zhang et al. 2021. GO:0071944: cell periphery. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:0090280: positive regulation of calcium ion import.	 Vegetative organ - Root,  Character as QTL - Plant growth activity,  Biochemical character,  Vegetative organ - Culm	Os05g0382600	LOC_Os05g31750.1				GO:0009737 - response to abscisic acid stimulus, GO:0048364 - root development, GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding, GO:0070509 - calcium ion import, GO:0009738 - abscisic acid mediated signaling	TO:0000207 - plant height, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000227 - root length	PO:0007520 - root development stage 
15467	ANN4	OsANN4, OsANN9, ANN9	ANNEXIN 4	Annexin 4	ANNEXIN 4	osann9, osann9-cr1, osann9-cr3	5	OsANN9 in Jia et al. 2023. GO:0035864: response to potassium ion. GO:2000377: regulation of reactive oxygen species metabolic process. GO:0071944: cell periphery.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0382900	LOC_Os05g31760.1				GO:0046686 - response to cadmium ion, GO:0005773 - vacuole, GO:0005509 - calcium ion binding, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0030104 - water homeostasis, GO:0005544 - calcium-dependent phospholipid binding, GO:0005886 - plasma membrane, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0051592 - response to calcium ion	TO:0000276 - drought tolerance, TO:0000136 - relative water content, TO:0000455 - seed set percent, TO:0000605 - hydrogen peroxide content, TO:0000095 - osmotic response sensitivity, TO:0001034 - relative plant height, TO:0002662 - leaf rolling tolerance	
15468	ANN5	OsANN5	ANNEXIN 5	Annexin 5	ANNEXIN 5		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0221200	LOC_Os06g11800.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005544 - calcium-dependent phospholipid binding, GO:0005783 - endoplasmic reticulum, GO:0005773 - vacuole, GO:0009639 - response to red or far red light, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005509 - calcium ion binding	TO:0000303 - cold tolerance	PO:0009009 - plant embryo , PO:0020141 - stem node , PO:0009046 - flower , PO:0009005 - root , PO:0009047 - stem 
15469	ANN6	OsANN6	ANNEXIN 6	Annexin 6	ANNEXIN 6		7		 Biochemical character	Os07g0659600	LOC_Os07g46550.1				GO:0005544 - calcium-dependent phospholipid binding, GO:0005509 - calcium ion binding		
15470	ANN7	OsANN7	ANNEXIN 7	Annexin 7	ANNEXIN 7		8		 Biochemical character	Os08g0425700	LOC_Os08g32970.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009639 - response to red or far red light, GO:0005509 - calcium ion binding, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005544 - calcium-dependent phospholipid binding		
15471	ANN8	OsANN8	ANNEXIN 8	Annexin 8	ANNEXIN 8		9		 Biochemical character	Os09g0368850	LOC_Os09g20330.1				GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding		
15472	ANN9	OsANN9	ANNEXIN 9	Annexin 9	ANNEXIN 9		9		 Biochemical character	Os09g0394900	LOC_Os09g23160.1, LOC_Os09g23160.2				GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding		
15473	ANN10	OsANN10	ANNEXIN 10	Annexin 10	ANNEXIN 10		9		 Biochemical character	Os09g0453300	LOC_Os09g27990.1				GO:0005509 - calcium ion binding, GO:0005544 - calcium-dependent phospholipid binding		
15474	CNGC1	OsCNGC1, OsCNGC15, CNGC15	CYCLIC NUCLEOTIDE GATED CHANNEL 1	Cyclic nucleotide gated channel 1, Cyclic nucleotide-gated ion channel 15			1	LOC_Os01g57370. Os01g0782700 (in Rap1 (build3), Rap2 (build4)). OsCNGC15 (Os01g0782700) in Nawaz et al. 2014. OsCNGC15 (LOC_Os01g57370) in Lee et al. 2022. OsCNGC15 (LOC_Os01g57370, Os01g0782800) in Wang et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0782800	LOC_Os01g57370.1				GO:0005216 - ion channel activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0008324 - cation transmembrane transporter activity, GO:0034220 - ion transmembrane transport, GO:0009507 - chloroplast, GO:0006812 - cation transport	TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance	
15475	CNGC2	OsCNGC2, OsCNGC1, CNGC1	CYCLIC NUCLEOTIDE GATED CHANNEL 2	Cyclic nucleotide gated channel 2, Cyclic nucleotide-gated ion channel 1			2	OsCNGC1 in Nawaz et al. 2014 and Kakar et al. 2015, Lee et al. 2022, Wang et al. 2023. GO:0071805: potassium ion transmembrane transport. 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0255000	LOC_Os02g15580.1, LOC_Os02g15580.2, LOC_Os02g15580.3				GO:0009723 - response to ethylene stimulus, GO:0009609 - response to symbiotic bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0005249 - voltage-gated potassium channel activity, GO:0009620 - response to fungus, GO:0034765 - regulation of ion transmembrane transport	TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000173 - ethylene sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
15476	CNGC3	OsCNGC3, OsCNGC7, CNGC7	CYCLIC NUCLEOTIDE GATED CHANNEL 3	Cyclic nucleotide gated channel 3, Cyclic nucleotide-gated ion channel 7			2	OsCNGC7 in Nawaz et al. 2014, Lee et al. 2022, Wang et al. 2023. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0627700	LOC_Os02g41710.1				GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0034220 - ion transmembrane transport, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0005216 - ion channel activity	TO:0000315 - bacterial disease resistance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity	PO:0025034 - leaf 
15477	CNGC4	OsCNGC4, OsCNGC12, CNGC12	CYCLIC NUCLEOTIDE GATED CHANNEL 4	Cyclic nucleotide gated channel 4, Cyclic nucleotide-gated ion channel 12			2	OsCNGC12 in Nawaz et al. 2014, Lee et al. 2022, Wang et al. 2023. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0773400	LOC_Os02g53340.1, LOC_Os02g53340.2				GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0042742 - defense response to bacterium, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000315 - bacterial disease resistance, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000276 - drought tolerance	
15478	CNGC5	OsCNGC5, OsCNGC10, CNGC10	CYCLIC NUCLEOTIDE GATED CHANNEL 5	Cyclic nucleotide gated channel 5, Cyclic nucleotide-gated ion channel 10			2	OsCNGC10 in Nawaz et al. 2014 and Kakar et al. 2015, Lee et al. 2022,  Wang et al. 2023. 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0789100	LOC_Os02g54760.1				GO:0009628 - response to abiotic stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0005886 - plasma membrane, GO:0009609 - response to symbiotic bacterium, GO:0009723 - response to ethylene stimulus	TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait, TO:0000315 - bacterial disease resistance, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root 
15479	CNGC6	OsCNGC6, OsCNGC4, CNGC4, OsSTA107	CYCLIC NUCLEOTIDE GATED CHANNEL 6	Cyclic nucleotide gated channel 6, Cyclic nucleotide-gated ion channel 4			3	OsCNGC4 in Nawaz et al. 2014, Lee et al. 2022, Wang et al. 2023. a mature anther-preferentially expressed gene. GO:0071805: potassium ion transmembrane transport. 	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os03g0646300	LOC_Os03g44440.1				GO:0009723 - response to ethylene stimulus, GO:0005886 - plasma membrane, GO:0005262 - calcium channel activity, GO:0009733 - response to auxin stimulus, GO:0009555 - pollen development, GO:0016021 - integral to membrane, GO:0034765 - regulation of ion transmembrane transport, GO:0042742 - defense response to bacterium, GO:0009735 - response to cytokinin stimulus, GO:0046686 - response to cadmium ion, GO:0005249 - voltage-gated potassium channel activity	TO:0000315 - bacterial disease resistance, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009046 - flower , PO:0025281 - pollen , PO:0001007 - pollen development stage , PO:0001059 - J bicellular pollen stage , PO:0001016 - L mature pollen stage , PO:0001017 - M germinated pollen stage , PO:0001015 - K second mitotic division stage , PO:0009066 - anther 
15480	CNGC7	OsCNGC7, OsCNGC14, CNGC14	CYCLIC NUCLEOTIDE GATED CHANNEL 7	Cyclic nucleotide gated channel 7, Cyclic nucleotide-gated ion channel 14		cngc14, cngc14-1, cngc14-2, cngc14-3	3	OsCNGC14 in Nawaz et al. 2014, Cui et al. 2020, Lee et al. 2022,  Lin et al. 2023, Wang et al. 2023. TO:0006047: calcium content trait. GO:0071805: potassium ion transmembrane transport. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0758300	LOC_Os03g55100.1				GO:0019722 - calcium-mediated signaling, GO:0005222 - intracellular cAMP activated cation channel activity, GO:0016021 - integral to membrane, GO:0034765 - regulation of ion transmembrane transport, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0005242 - inward rectifier potassium channel activity, GO:0005262 - calcium channel activity, GO:0009507 - chloroplast, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0007263 - nitric oxide mediated signal transduction, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009626 - plant-type hypersensitive response	TO:0000315 - bacterial disease resistance, TO:0000163 - auxin sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
15481	CNGC8	OsCNGC8, OsCNGC6, CNGC6, OsCNGC9	CYCLIC NUCLEOTIDE GATED CHANNEL 8	Cyclic nucleotide gated channel 8, Cyclic nucleotide-gated ion channel 6			4	OsCNGC6 in Nawaz et al. 2014 and Kakar et al. 2015,  Wang et al. 2023. OsCNGC9 in Chen et al. 2018, Lee et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0643600	LOC_Os04g55080.1				GO:0009507 - chloroplast, GO:0009628 - response to abiotic stimulus, GO:0009733 - response to auxin stimulus, GO:0005886 - plasma membrane, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0009609 - response to symbiotic bacterium, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance	
15482	CNGC9	OsCNGC9, OsCNGC16, CNGC16	CYCLIC NUCLEOTIDE GATED CHANNEL 9	Cyclic nucleotide gated channel 9, Cyclic nucleotide-gated ion channel 16		cngc16, cngc16-1, cngc16-2, cngc16-3	5	OsCNGC16 in Nawaz et al. 2014, Cui et al. 2020, Lee et al. 2022, Wang et al. 2023. TO:0006047: calcium content trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0502000	LOC_Os05g42250.1				GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0034220 - ion transmembrane transport, GO:0005216 - ion channel activity, GO:0005886 - plasma membrane, GO:0019722 - calcium-mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0000163 - auxin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000615 - abscisic acid sensitivity	
15483	CNGC10	OsCNGC10, OsCNGC11, CNGC11	CYCLIC NUCLEOTIDE GATED CHANNEL 10	Cyclic nucleotide gated channel 10, Cyclic nucleotide-gated ion channel 11			6	OsCNGC11 in Nawaz et al. 2014, Lee et al. 2022, Wang et al. 2023. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0188000	LOC_Os06g08850.1, LOC_Os06g08850.2				GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005743 - mitochondrial inner membrane, GO:0042742 - defense response to bacterium, GO:0009723 - response to ethylene stimulus, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold	TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance	
15484	CNGC11	OsCNGC11, OsCNGC13, CNGC13, SSS1-D	CYCLIC NUCLEOTIDE GATED CHANNEL 11	Cyclic nucleotide gated channel 11, Cyclic nucleotide-gated ion channel 13, semi-seed-setting rate1-Dominant		sss1-D, OsCNGC13-D	6	OsCNGC13 in Nawaz et al. 2014 and Xu et al. 2017, Lee et al. 2022, Wang et al. 2023, Wang et al. 2024. TO:0006047: calcium content trait. GO:0160020: positive regulation of ferroptosis. 	 Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0207700	LOC_Os06g10580.1, LOC_Os06g10580.2				GO:0009723 - response to ethylene stimulus, GO:0005886 - plasma membrane, GO:0009624 - response to nematode, GO:0030198 - extracellular matrix organization, GO:0043067 - regulation of programmed cell death, GO:0009626 - plant-type hypersensitive response, GO:0080092 - regulation of pollen tube growth, GO:0050832 - defense response to fungus, GO:0070588 - calcium ion transmembrane transport, GO:0005887 - integral to plasma membrane, GO:0005249 - voltage-gated potassium channel activity, GO:0042391 - regulation of membrane potential, GO:0042742 - defense response to bacterium, GO:0009735 - response to cytokinin stimulus, GO:0005216 - ion channel activity	TO:0000173 - ethylene sensitivity, TO:0000180 - spikelet fertility, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance, TO:0006001 - salt tolerance, TO:0000167 - cytokinin sensitivity	PO:0025034 - leaf 
15485	CNGC12	OsCNGC12, OsCNGC2, CNGC2	CYCLIC NUCLEOTIDE GATED CHANNEL 12	Cyclic nucleotide gated channel 12, Cyclic nucleotide-gated ion channel 2			6	OsCNGC2 in Nawaz et al. 2014, Lee et al. 2022,  Wang et al. 2023, Wang et al. 2024. OsCaM1 target gene. GO:0071805: potassium ion transmembrane transport.  GO:0160020: positive regulation of ferroptosis. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0527100	LOC_Os06g33570.1				GO:0034765 - regulation of ion transmembrane transport, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009735 - response to cytokinin stimulus, GO:0050832 - defense response to fungus, GO:0009626 - plant-type hypersensitive response, GO:0005249 - voltage-gated potassium channel activity, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000315 - bacterial disease resistance	
15486	CNGC13	OsCNGC13, OsCNGC1, OsCNGC3, CNGC3	CYCLIC NUCLEOTIDE GATED CHANNEL 13	Cyclic nucleotide gated channel 13			6	OsCNGC1 in Kim et al. 2021. OsCNGC3 in  Wang et al. 2023.	 Biochemical character	Os06g0527300	LOC_Os06g33600.1				GO:0006813 - potassium ion transport, GO:0005886 - plasma membrane, GO:0005221 - intracellular cyclic nucleotide activated cation channel activity, GO:0034220 - ion transmembrane transport, GO:0006816 - calcium ion transport		
15487	CNGC14	OsCNGC14, OsCNGC3, CNGC3	CYCLIC NUCLEOTIDE GATED CHANNEL 14	Cyclic nucleotide gated channel 14, Cyclic nucleotide-gated ion channel 3			6	OsCNGC3 in Nawaz et al. 2014, Lee et al. 2022. 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Os06g33610.1				GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006813 - potassium ion transport, GO:0006816 - calcium ion transport, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0009620 - response to fungus, GO:0034220 - ion transmembrane transport, GO:0005221 - intracellular cyclic nucleotide activated cation channel activity, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000315 - bacterial disease resistance, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
15488	CDS1	OsCNGC15, CNGC15, OsCNGC9, CNGC9, OsCDS1	CELL DEATH AND SUSCEPTIBLE TO BLAST 1	Cyclic nucleotide gated channel 15, Cyclic nucleotide-gated ion channel 9	CYCLIC NUCLEOTIDE GATED CHANNEL 15	cds1	9	OsCNGC9 in Nawaz et al. 2014, Wang et al. 2019, Jia et al. 2022, Lee et al. 2022, Ouyang et al. 2023,  Wang et al. 2023. GO:0140426: PAMP-triggered immunity signalling pathway. GO:0035585: calcium-mediated signaling using extracellular calcium source. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0558300	LOC_Os09g38580.5, LOC_Os09g38580.4, LOC_Os09g38580.3, LOC_Os09g38580.1				GO:0005216 - ion channel activity, GO:0002221 - pattern recognition receptor signaling pathway, GO:0050832 - defense response to fungus, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0034220 - ion transmembrane transport, GO:0009737 - response to abscisic acid stimulus, GO:0045089 - positive regulation of innate immune response, GO:0070588 - calcium ion transmembrane transport, GO:0005262 - calcium channel activity, GO:0043067 - regulation of programmed cell death, GO:0002679 - respiratory burst during defense response, GO:0010200 - response to chitin, GO:0002237 - response to molecule of bacterial origin, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0019722 - calcium-mediated signaling, GO:0009735 - response to cytokinin stimulus, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000063 - mimic response, TO:0000074 - blast disease, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000315 - bacterial disease resistance	PO:0005645 - leaf mesophyll , PO:0009047 - stem , PO:0025034 - leaf 
15489	CNGC16	OsCNGC16, OsCNGC8, CNGC8, OsSTA273	CYCLIC NUCLEOTIDE GATED CHANNEL 16	Cyclic nucleotide gated channel 16, Cyclic nucleotide-gated ion channel 8			12	OsCNGC8 in Nawaz et al. 2014, Lee et al. 2022, Wang et al. 2023. a mature anther-preferentially expressed gene. GO:0071805: potassium ion transmembrane transport. 	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os12g0163000	LOC_Os12g06570.1				GO:0009733 - response to auxin stimulus, GO:0034765 - regulation of ion transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0009507 - chloroplast, GO:0005249 - voltage-gated potassium channel activity, GO:0005262 - calcium channel activity, GO:0042742 - defense response to bacterium, GO:0009723 - response to ethylene stimulus, GO:0009555 - pollen development, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000315 - bacterial disease resistance	PO:0009046 - flower , PO:0001007 - pollen development stage , PO:0001059 - J bicellular pollen stage , PO:0001017 - M germinated pollen stage , PO:0001015 - K second mitotic division stage , PO:0001016 - L mature pollen stage , PO:0009066 - anther , PO:0025281 - pollen 
15490	CNGC17	OsCNGC17, OsCNGC5, CNGC5, OsSTA282	CYCLIC NUCLEOTIDE GATED CHANNEL 17	Cyclic nucleotide gated channel 17, Cyclic nucleotide-gated ion channel 5		cngc5, cngc5-f, cngc5-1c	12	OsCNGC5 in Nawaz et al. 2014, Lee et al. 2022,  Wang et al. 2023, Zheng et al. 2024. a mature anther-preferentially expressed gene. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:1903428: positive regulation of reactive oxygen species biosynthetic process. GO:0090280: positive regulation of calcium ion import.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0468500	LOC_Os12g28260.1				GO:0043410 - positive regulation of MAPKKK cascade, GO:0019722 - calcium-mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0009555 - pollen development, GO:0005262 - calcium channel activity, GO:0042742 - defense response to bacterium, GO:0009507 - chloroplast, GO:0050832 - defense response to fungus, GO:0002758 - innate immune response-activating signal transduction, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0070509 - calcium ion import	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000173 - ethylene sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000255 - sheath blight disease resistance	PO:0009046 - flower , PO:0001016 - L mature pollen stage , PO:0001015 - K second mitotic division stage , PO:0001059 - J bicellular pollen stage , PO:0001007 - pollen development stage , PO:0025281 - pollen , PO:0009066 - anther , PO:0001017 - M germinated pollen stage 
15491	GLR1.1	OsGLR1.1, OsGLR1.2, GLR1.2, OsGLR9.8, GLR9.8	GLUTAMATE RECEPTOR HOMOLOG 1.1	Glutamate receptor homolog 1.1, glutamate receptor  1.1, GLUTAMATE RECEPTOR-LIKE 1.2, Glutamate receptor 9.8, Glutamate-like receptor 9.8	GLUTAMATE RECEPTOR HOMOLOG 1.1	osglr9.8-1, osglr9.8-2, osglr9.8-3	9	OsGLR1.2 in Ni et al. 2016. OsGLR9.8 in Shi et al. 2022, Zeng et al. 2023. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character,  Reproductive organ - panicle,  Character as QTL - Plant growth activity	Os09g0431200	LOC_Os09g26160.1, LOC_Os09g26160.2				GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0034220 - ion transmembrane transport, GO:0004970 - ionotropic glutamate receptor activity, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0009737 - response to abscisic acid stimulus, GO:0046686 - response to cadmium ion, GO:0009753 - response to jasmonic acid stimulus, GO:0009413 - response to flooding	TO:0000114 - flooding related trait, TO:0000455 - seed set percent, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000357 - growth and development trait, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root , PO:0005360 - aleurone layer , PO:0009066 - anther , PO:0005052 - plant callus , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009010 - seed 
15492	GLR1.2	OsGLR1.2, OsGLR1.4, GLR1.4, OsGLR2.2, GLR2.2	GLUTAMATE RECEPTOR HOMOLOG 1.2	Glutamate receptor homolog 1.2, Glutamate receptor 1.2, GLUTAMATE RECEPTOR-LIKE 1.4, Glutamate receptor 2.2, Glutamate-like receptor 2.2	GLUTAMATE RECEPTOR HOMOLOG 1.2	osglr2.2-1, osglr2.2-2, osglr2.2-3	2	OsGLR1.4 in Ni et al. 2016.  OsGLR2.2 in Shi et al. 2022, Zeng et al. 2023.	 Reproductive organ - panicle,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0787600	LOC_Os02g54640.1				GO:0034220 - ion transmembrane transport, GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0035235 - ionotropic glutamate receptor signaling pathway	TO:0000114 - flooding related trait, TO:0000276 - drought tolerance, TO:0000152 - panicle number, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000040 - panicle length, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009005 - root 
15493	GLR1.3	OsGLR1.3, OsGLR1.1, GLR1.1, OsGLR9.7, GLR9.7	GLUTAMATE RECEPTOR HOMOLOG 1.3	Glutamate receptor homolog 1.3, Glutamate receptor 1.3, GLUTAMATE RECEPTOR-LIKE 1.1, Glutamate receptor 9.7, Glutamate-like receptor 9.7	GLUTAMATE RECEPTOR HOMOLOG 1.3		9	OsGLR1.1 in Ni et al. 2016, Bang et al. 2018.  OsGLR9.7 in Shi et al. 2022, Zeng et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0431100	LOC_Os09g26144.1				GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0034220 - ion transmembrane transport, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0004970 - ionotropic glutamate receptor activity, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009046 - flower 
15494	GLR2.1	OsGLR2.1, OsGLR2.2, GLR2.2, OsGLR9.3, GLR9.3	GLUTAMATE RECEPTOR HOMOLOG 2.1	Glutamate receptor homolog 2.1, GLUTAMATE RECEPTOR-LIKE 2.2, Glutamate receptor 9.3, Glutamate-like receptor 9.3	GLUTAMATE RECEPTOR HOMOLOG 2.1		9	OsGLR2.2 in Ni et al. 2016. OsGLR9.3 in Shi et al. 2022, Zeng et al. 2023.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os09g0429000	LOC_Os09g25960.1				GO:0005886 - plasma membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0009413 - response to flooding, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0004970 - ionotropic glutamate receptor activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000114 - flooding related trait, TO:0000382 - 1000-seed weight, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009030 - carpel 
15495	GLR2.2	OsGLR2.2, OsGLR2.1, GLR2.1, OsGLR9.4, GLR9.4	GLUTAMATE RECEPTOR HOMOLOG 2.2	Glutamate receptor homolog 2.2, GLUTAMATE RECEPTOR-LIKE 2.1, Glutamate receptor 9.4, Glutamate-like receptor 9.4	GLUTAMATE RECEPTOR HOMOLOG 2.2		9	OsGLR2.1 in Ni et al. 2016. OsGLR9.4 in Shi et al. 2022, Zeng et al. 2023.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os09g0429200	LOC_Os09g25980.1				GO:0009413 - response to flooding, GO:0005215 - transporter activity, GO:0070509 - calcium ion import, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0010107 - potassium ion import	TO:0000382 - 1000-seed weight, TO:0000303 - cold tolerance, TO:0000114 - flooding related trait	PO:0009005 - root , PO:0009030 - carpel 
15496	GLR2.3	OsGLR2.3, OsGLR9.5, GLR9.5	GLUTAMATE RECEPTOR HOMOLOG 2.3	Glutamate receptor homolog 2.3, GLUTAMATE RECEPTOR-LIKE 2.3, Glutamate receptor 9.5, Glutamate-like receptor 9.5	GLUTAMATE RECEPTOR HOMOLOG 2.3		9	OsGLR9.5 in Shi et al. 2022, Zeng et al. 2023.	 Character as QTL - Yield and productivity,  Biochemical character	Os09g0429400	LOC_Os09g25990.1				GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0004970 - ionotropic glutamate receptor activity, GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0035235 - ionotropic glutamate receptor signaling pathway	TO:0000163 - auxin sensitivity, TO:0000382 - 1000-seed weight, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009030 - carpel , PO:0008039 - stem base 
15497	GLR2.4	OsGLR2.4, OsGLR9.6, GLR9.6	GLUTAMATE RECEPTOR HOMOLOG 2.4	Glutamate receptor homolog 2.4, GLUTAMATE RECEPTOR-LIKE 2.4, Glutamate receptor 9.6, Glutamate-like receptor 9.6	GLUTAMATE RECEPTOR HOMOLOG 2.4		9	OsGLR9.6 in Shi et al. 2022, Zeng et al. 2023.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os09g0429500	LOC_Os09g26000.1				GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0005886 - plasma membrane, GO:0009413 - response to flooding, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0004970 - ionotropic glutamate receptor activity	TO:0000303 - cold tolerance, TO:0000114 - flooding related trait, TO:0000382 - 1000-seed weight	PO:0009030 - carpel , PO:0009010 - seed 
15498	_	OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2, OsGLR2.1, GLR2.1	_	Glutamate receptor homolog 3.1, GLUTAMATE RECEPTOR-LIKE 3.2, Glutamate receptor 2.1, Glutamate-like receptor 2.1			2	OsGLR3.2 in Ni et al. 2016. OsGLR2.1 in Shi et al. 2022, Zeng et al. 2023. GO:0071230: cellular response to amino acid stimulus. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Plant growth activity	Os02g0117500	LOC_Os02g02540.1				GO:0009630 - gravitropism, GO:0016021 - integral to membrane, GO:0004970 - ionotropic glutamate receptor activity, GO:0004965 - GABA-B receptor activity, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0010107 - potassium ion import, GO:0005262 - calcium channel activity, GO:0045087 - innate immune response, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0046686 - response to cadmium ion, GO:0035235 - ionotropic glutamate receptor signaling pathway	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000357 - growth and development trait, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009030 - carpel , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009010 - seed , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009066 - anther 
15500	GLR3.3	OsGLR3.3, OsGLR3.5, GLR3.5, OsGLR6.1, GLR6.1	GLUTAMATE RECEPTOR HOMOLOG 3.3	Glutamate receptor homolog 3.3, GLUTAMATE RECEPTOR-LIKE 3.5, Glutamate receptor 6.1, Glutamate-like receptor 6.1	GLUTAMATE RECEPTOR HOMOLOG 3.3		6	OsGLR3.5 in Ni et al. 2016. OsGLR6.1 in Shi et al. 2022, Zeng et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0155000	LOC_Os06g06130.1				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0009413 - response to flooding, GO:0034220 - ion transmembrane transport	TO:0000276 - drought tolerance, TO:0000114 - flooding related trait	
15501	GLR3.4	OsGLR3.4, OsGLR6.11, GLR6.11	GLUTAMATE RECEPTOR HOMOLOG 3.4	Glutamate receptor homolog 3.4, Glutamate receptor 6.11, Glutamate-like receptor 6.11	GLUTAMATE RECEPTOR HOMOLOG 3.4		6	OsGLR6.11 in Shi et al. 2022, Zeng et al. 2023. GO:0035864: response to potassium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0246600	LOC_Os06g13730.1				GO:0051592 - response to calcium ion, GO:0004970 - ionotropic glutamate receptor activity, GO:0046686 - response to cadmium ion, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009010 - seed 
15502	GLR3.5	OsGLR3.5, OsGLR3.3, GLR3.3, OsGLR6.12, GLR6.12	GLUTAMATE RECEPTOR HOMOLOG 3.5	Glutamate receptor homolog 3.5, GLUTAMATE RECEPTOR-LIKE 3.3, Glutamate receptor 6.12, Glutamate-like receptor 6.12	GLUTAMATE RECEPTOR HOMOLOG 3.5		6	OsGLR3.3 in Ni et al. 2016. OsGLR6.12 in Shi et al. 2022, Zeng et al. 2023. PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Character as QTL - Plant growth activity	Os06g0680500	LOC_Os06g46670.2, LOC_Os06g46670.3				GO:0009413 - response to flooding, GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0004970 - ionotropic glutamate receptor activity, GO:0009735 - response to cytokinin stimulus, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000357 - growth and development trait, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number	PO:0009006 - shoot system , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0025034 - leaf , PO:0009030 - carpel , PO:0009066 - anther 
15503	GLR3.6	OsGLR3.6, OsGLR3.4, GLR3.4, OsGLR7.1, GLR7.1	GLUTAMATE RECEPTOR HOMOLOG 3.6	Glutamate receptor homolog 3.6, GLUTAMATE RECEPTOR-LIKE 3.4, Glutamate receptor 7.1, Glutamate-like receptor 7.1	GLUTAMATE RECEPTOR HOMOLOG 3.6	osglr7.1-1, osglr7.1-2, osglr7.1-3	7	OsGLR3.4 in Ni et al. 2016. OsGLR7.1 in Shi et al. 2022, Zeng et al. 2023. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Biochemical character,  Vegetative organ - Culm	Os07g0103100	LOC_Os07g01310.1				GO:0009733 - response to auxin stimulus, GO:0004965 - GABA-B receptor activity, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009735 - response to cytokinin stimulus, GO:0004970 - ionotropic glutamate receptor activity, GO:0034220 - ion transmembrane transport, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000357 - growth and development trait, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000455 - seed set percent, TO:0000040 - panicle length, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number, TO:0000172 - jasmonic acid sensitivity, TO:0000114 - flooding related trait, TO:0000163 - auxin sensitivity, TO:0000207 - plant height, TO:0000167 - cytokinin sensitivity	PO:0009005 - root , PO:0009006 - shoot system , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0009066 - anther , PO:0005360 - aleurone layer , PO:0009030 - carpel 
15504	GLR3.7	OsGLR3.7, OsGLR7.2, GLR7.2	GLUTAMATE RECEPTOR HOMOLOG 3.7	Glutamate receptor homolog 3.7, Glutamate receptor 3.4, Glutamate receptor 7.2, Glutamate-like receptor 7.2	GLUTAMATE RECEPTOR HOMOLOG 3.7		7	OsGLR7.2 in Shi et al. 2022, Zeng et al. 2023. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character,  Character as QTL - Plant growth activity,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0522600	LOC_Os07g33790.1				GO:0009753 - response to jasmonic acid stimulus, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold, GO:0004965 - GABA-B receptor activity, GO:0016021 - integral to membrane, GO:0005215 - transporter activity, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000357 - growth and development trait	PO:0009010 - seed , PO:0009006 - shoot system , PO:0009030 - carpel , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0005360 - aleurone layer , PO:0009066 - anther , PO:0009005 - root , PO:0009049 - inflorescence 
15505	GLR3.8	OsGLR3.8, OsGLR9.9, GLR9.9	GLUTAMATE RECEPTOR HOMOLOG 3.8	Glutamate receptor homolog 3.8, Glutamate receptor 9.9, Glutamate-like receptor 9.9	GLUTAMATE RECEPTOR HOMOLOG 3.8		9	OsGLR9.9 in Shi et al. 2022, Zeng et al. 2023. GO:0071311: cellular response to acetate. GO:0071230: cellular response to amino acid stimulus. GO:0071260: cellular response to mechanical stimulus. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0485700	LOC_Os09g31160.1				GO:0070417 - cellular response to cold, GO:0009611 - response to wounding, GO:0005262 - calcium channel activity, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0008066 - glutamate receptor activity, GO:0009414 - response to water deprivation, GO:0015276 - ligand-gated ion channel activity, GO:0019722 - calcium-mediated signaling	TO:0000276 - drought tolerance, TO:0000114 - flooding related trait, TO:0000303 - cold tolerance	
15506	GLR4.1	OsGLR4.1, OsGLR6.2, GLR6.2	GLUTAMATE RECEPTOR HOMOLOG 4.1	Glutamate receptor homolog 4.1, Glutamate receptor 6.2, Glutamate-like receptor 6.2	GLUTAMATE RECEPTOR HOMOLOG 4.1		6	OsGLR6.2 in Shi et al. 2022, Zeng et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0188400	LOC_Os06g08880.1				GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0016020 - membrane, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0004970 - ionotropic glutamate receptor activity	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000114 - flooding related trait, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity	
15507	GLR4.2	OsGLR4.2, OsGLR6.3, GLR6.3	GLUTAMATE RECEPTOR HOMOLOG 4.2	Glutamate receptor homolog 4.2, Glutamate receptor 6.3, Glutamate-like receptor 6.3	GLUTAMATE RECEPTOR HOMOLOG 4.2		6	OsGLR6.3 in Shi et al. 2022, Zeng et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0188600	LOC_Os06g08890.1				GO:0004970 - ionotropic glutamate receptor activity, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0034220 - ion transmembrane transport, GO:0016020 - membrane, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0035235 - ionotropic glutamate receptor signaling pathway	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009010 - seed 
15508	GLR4.3	OsGLR4.3, OsGLR6.4, GLR6.4	GLUTAMATE RECEPTOR HOMOLOG 4.3	Glutamate receptor homolog 4.3, Glutamate receptor 6.4, Glutamate-like receptor 6.4	GLUTAMATE RECEPTOR HOMOLOG 4.3		6	OsGLR6.4 in Shi et al. 2022, Zeng et al. 2023.	 Vegetative organ - Culm,  Biochemical character,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os06g0188700	LOC_Os06g08900.1				GO:0009413 - response to flooding, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0034220 - ion transmembrane transport, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0004970 - ionotropic glutamate receptor activity, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000040 - panicle length, TO:0000114 - flooding related trait, TO:0000382 - 1000-seed weight, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000152 - panicle number	PO:0009010 - seed 
15509	GLR4.4	OsGLR4.4, OsGLR6.5, GLR6.5	GLUTAMATE RECEPTOR HOMOLOG 4.4	Glutamate receptor homolog 4.4, Glutamate receptor 6.5, Glutamate-like receptor 6.5	GLUTAMATE RECEPTOR HOMOLOG 4.4		6	OsGLR6.5 in Shi et al. 2022, Zeng et al. 2023. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Biochemical character,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Reproductive organ - panicle	Os06g0188800	LOC_Os06g08910.1, LOC_Os06g08910.2, LOC_Os06g08910.3				GO:0009753 - response to jasmonic acid stimulus, GO:0004970 - ionotropic glutamate receptor activity, GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0034220 - ion transmembrane transport, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009413 - response to flooding, GO:0005234 - extracellular-glutamate-gated ion channel activity	TO:0002677 - brassinosteroid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000357 - growth and development trait, TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000382 - 1000-seed weight	PO:0025034 - leaf , PO:0009010 - seed , PO:0009006 - shoot system , PO:0009005 - root , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0009030 - carpel , PO:0005360 - aleurone layer , PO:0009066 - anther 
15510	GLR4.5	OsGLR4.5, OsGLR6.6, GLR6.6	GLUTAMATE RECEPTOR HOMOLOG 4.5	Glutamate receptor homolog 4.5, Glutamate receptor 6.6, Glutamate-like receptor 6.6	GLUTAMATE RECEPTOR HOMOLOG 4.5		6	OsGLR6.6 in Shi et al. 2022, Zeng et al. 2023.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - panicle	Os06g0189100	LOC_Os06g08930.1				GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0004970 - ionotropic glutamate receptor activity, GO:0034220 - ion transmembrane transport, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0009413 - response to flooding, GO:0016021 - integral to membrane	TO:0000114 - flooding related trait, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000207 - plant height	
15511	GLR4.6	OsGLR4.6, OsGLR6.7, GLR6.7	GLUTAMATE RECEPTOR HOMOLOG 4.6	Glutamate receptor homolog 4.6, Glutamate receptor 6.7, Glutamate-like receptor 6.7	GLUTAMATE RECEPTOR HOMOLOG 4.6		6	OsGLR6.7 in Shi et al. 2022, Zeng et al. 2023. GO:0038023: signaling receptor activity.	 Biochemical character,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os06g0190000	LOC_Os06g09050.1				GO:0015276 - ligand-gated ion channel activity, GO:0005215 - transporter activity	TO:0000382 - 1000-seed weight, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000152 - panicle number	
15512	GLR4.7	OsGLR4.7, OsGLR6.8, GLR6.8	GLUTAMATE RECEPTOR HOMOLOG 4.7	Glutamate receptor homolog 4.7, Glutamate receptor 6.8, Glutamate-like receptor 6.8	GLUTAMATE RECEPTOR HOMOLOG 4.7	osglr6.8-1, osglr6.8-2, osglr6.8-3	6	OsGLR6.8 in Shi et al. 2022, Zeng et al. 2023. GO:0038023: signaling receptor activity. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Biochemical character	Os06g0190500	LOC_Os06g09090.4, LOC_Os06g09090.3, LOC_Os06g09090.1, LOC_Os06g09090.2				GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0046686 - response to cadmium ion, GO:0009741 - response to brassinosteroid stimulus, GO:0015276 - ligand-gated ion channel activity, GO:0009753 - response to jasmonic acid stimulus, GO:0005886 - plasma membrane, GO:0016020 - membrane	TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000357 - growth and development trait, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000455 - seed set percent	PO:0005360 - aleurone layer , PO:0009006 - shoot system , PO:0009010 - seed , PO:0009005 - root , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0009066 - anther 
15513	GLR4.8	OsGLR4.8, OsGLR6.9, GLR6.9	GLUTAMATE RECEPTOR HOMOLOG 4.8	Glutamate receptor homolog 4.8, Glutamate receptor 6.9, Glutamate-like receptor 6.9	GLUTAMATE RECEPTOR HOMOLOG 4.8		6	OsGLR6.9 in Shi et al. 2022, Zeng et al. 2023.	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os06g0190700	LOC_Os06g09120.1				GO:0035235 - ionotropic glutamate receptor signaling pathway, GO:0004970 - ionotropic glutamate receptor activity, GO:0034220 - ion transmembrane transport, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number, TO:0000303 - cold tolerance	PO:0025034 - leaf 
15514	GLR4.9	OsGLR4.9, OsGLR1.3, GLR1.3, OsGLR6.10, GLR6.10	GLUTAMATE RECEPTOR HOMOLOG 4.9	Glutamate receptor homolog 4.9, GLUTAMATE RECEPTOR-LIKE 1.3, Glutamate receptor 6.10, Glutamate-like receptor 6.10	GLUTAMATE RECEPTOR HOMOLOG 4.9		6	OsGLR1.3 in Ni et al. 2016. OsGLR6.10 in Shi et al. 2022, Zeng et al. 2023. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0190800	LOC_Os06g09130.1				GO:0009741 - response to brassinosteroid stimulus, GO:0016021 - integral to membrane, GO:0005234 - extracellular-glutamate-gated ion channel activity, GO:0005886 - plasma membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0004970 - ionotropic glutamate receptor activity	TO:0000276 - drought tolerance, TO:0000114 - flooding related trait, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number, TO:0002677 - brassinosteroid sensitivity, TO:0000303 - cold tolerance	PO:0009049 - inflorescence , PO:0005360 - aleurone layer , PO:0009005 - root , PO:0009066 - anther , PO:0005052 - plant callus , PO:0009030 - carpel , PO:0025034 - leaf , PO:0009010 - seed , PO:0009006 - shoot system 
15515	V4	OsV4	VIRESCENT 4 	virescent 4	VIRESCENT 4 	osv4	4	a pentatricopeptide repeat protein.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os04g0475500	LOC_Os04g39970.1					TO:0002715 - chloroplast development trait, TO:0000303 - cold tolerance	
15516	PM1	AWPM-19, PM19, OsPM1, OsPM-1, OsPM19L1, PM19L1, OsAWPM-19, OsPM19	PLASMA MEMBRANE PROTEIN 1	plasma membrane protein 1, AWPM-19-like protein 1	PLASMA MEMBRANE PROTEIN 1		5	a homologue gene of wheat plasma membrane protein (WPM-1). OsPM19L1 in Chen et al. 2015. AWPM-19 Family Protein. GO:0080168: abscisic acid transport. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Inflorescence	Os05g0381400	LOC_Os05g31670.1				GO:0016036 - cellular response to phosphate starvation, GO:0010029 - regulation of seed germination, GO:0012505 - endomembrane system, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0042594 - response to starvation, GO:0005886 - plasma membrane, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait, TO:0000095 - osmotic response sensitivity, TO:0000102 - phosphorus sensitivity, TO:0002667 - abscisic acid content	PO:0009009 - plant embryo , PO:0020104 - leaf sheath , PO:0007057 - 0 seed germination stage , PO:0001083 - inflorescence development stage , PO:0009015 - portion of vascular tissue , PO:0000293 - guard cell 
15517	HSP90.1	Hsp90, OsHSP90.1	HEAT SHOCK PROTEIN 90.1	Heat shock protein 90.1	HEAT SHOCK PROTEIN 90.1		4	AtHSP90.1 homolog.	 Tolerance and resistance - Stress tolerance	Os04g0107900	LOC_Os04g01740.1				GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0006457 - protein folding	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
15518	GPA3	OsGPA3	GLUTELIN PRECURSOR ACCUMULATION 3	GLUTELIN PRECURSOR ACCUMULATION3, glutelin precursor accumulation 3		gpa3	3		 Seed - Physiological traits - Storage substances	Os03g0835800	LOC_Os03g61950.1, LOC_Os03g61950.2					TO:0000104 - floury endosperm, TO:0002653 - endosperm storage protein content	
15520	MATE1	OsMATE1, OsMATE9, MATE9	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 1	Multidrug and Toxic compound Extrusion protein 1	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 1		3	OsMATE9 in Mackon et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0188100	LOC_Os03g08900.1				GO:0016020 - membrane, GO:0015238 - drug transporter activity, GO:0015297 - antiporter activity	TO:0000112 - disease resistance, TO:0000164 - stress trait	
15521	MATE2	OsMATE2	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 2	Multidrug and Toxic compound Extrusion protein 2	MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 2		3	KC631818.1. a target of osa-miR1846 (osa-miR1846a-5p and osa-miR1846b-5p). TO:0006054: arsenic content trait.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0554000	LOC_Os05g48040.4, LOC_Os05g48040.1, LOC_Os05g48040.2, LOC_Os05g48040.3				GO:0005774 - vacuolar membrane, GO:0051238 - sequestering of metal ion, GO:0009611 - response to wounding, GO:0015691 - cadmium ion transport, GO:0015297 - antiporter activity, GO:0015238 - drug transporter activity, GO:0009507 - chloroplast, GO:0046685 - response to arsenic	TO:0000164 - stress trait, TO:0000112 - disease resistance	
15522	XPB2	OsXPB2	XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP OF PROTEIN B2	Xeroderma pigmentosum (XP) complementation group of protein B2, DNA repair helicase XPB2	XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP OF PROTEIN B2		1	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os01g0691600	LOC_Os01g49680.1				GO:0003677 - DNA binding, GO:0005737 - cytoplasm, GO:0006289 - nucleotide-excision repair, GO:0010224 - response to UV-B, GO:0005524 - ATP binding, GO:0004003 - ATP-dependent DNA helicase activity	TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	PO:0009049 - inflorescence 
15523	_	OsXPD, XPD	_	Xeroderma pigmentosum (XP) complementation group of protein D, XERODERMA PIGMENTOSUM D			5	LOC_Os05g05260. TFIIH sub-complex.	 Tolerance and resistance - Stress tolerance	Os05g0144800	LOC_Os05g05260.1				GO:0006289 - nucleotide-excision repair, GO:0009408 - response to heat, GO:0009411 - response to UV, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0004003 - ATP-dependent DNA helicase activity, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	
15524	_	OsTFIIS	_	Transcription Elongation Factor II-S			7		 Other,  Tolerance and resistance - Stress tolerance	Os07g0229700	LOC_Os07g12630.1				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0032784 - regulation of RNA elongation, GO:0006357 - regulation of transcription from RNA polymerase II promoter	TO:0000161 - radiation response trait, TO:0006001 - salt tolerance	
15525	_	OsTFIIS-like gene, OsMed26_3, Med26_3	_	Transcription Elongation Factor II-S-like gene, Mediator 26_3			12	LOC_Os12g06850.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0165700	LOC_Os12g06850.1, LOC_Os12g06850.2, LOC_Os12g06850.3, LOC_Os12g06850.4				GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003746 - translation elongation factor activity, GO:0005829 - cytosol	TO:0006001 - salt tolerance, TO:0000161 - radiation response trait	
15526	ASMT11	OsASMT11, OsCOMT17, COMT17	ACETYL-SEROTONIN METHYLTRANSFERASE 11	acetyl-serotonin methyltransferase 11, Caffeic Acid O-Methyltransferase 17	ACETYL-SEROTONIN METHYLTRANSFERASE 11		8		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Biochemical character	Os08g0290700	LOC_Os08g19420.1				GO:0009607 - response to biotic stimulus, GO:0019438 - aromatic compound biosynthetic process, GO:0032259 - methylation, GO:0007623 - circadian rhythm, GO:0005737 - cytoplasm, GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0008171 - O-methyltransferase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000124 - flag leaf angle, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0009005 - root , PO:0009047 - stem 
15527	GIF1	OsGIF1	GRF-INTERACTING FACTOR 1	GRF-interacting factor 1	GRF-INTERACTING FACTOR 1		11	TO:0000816: inflorescence bract anatomy and morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os11g0615200	LOC_Os11g40100.3, LOC_Os11g40100.2, LOC_Os11g40100.1					TO:0000240 - sterile lemma length, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0006022 - floral organ development trait	
15528	GIF2	OsGIF2	GRF-INTERACTING FACTOR 2	GRF-interacting factor 2	GRF-INTERACTING FACTOR 2		12			Os12g0496900	LOC_Os12g31350.1						
15529	MYB48	OsMYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59, Os2R_MYB19, 2R_MYB19	MYB TRANSCRIPTION FACTOR 48	MYB transcription factor 48, R2R3-MYB Transcription Factor 19	MYB TRANSCRIPTION FACTOR 48		1	OsMYB59 in Chen et al. 2018, Islam et al. 2021. ObaMYB59 (OBART01G45730, Oryza barthii), ObMYB59 (OB01G54920, Oryza brachyantha), OgMYB59 (ORGLA01G0394700, Oryza glaberrima), OsMYB59_Indica (BGIOSGA005283-TA, Oryza sativa indica), OpMYB59 (OPUNC01G44650, Oryza punctata), OrMYB59 (ORUFI01G49220, Oryza rufipogon). GO:1900055: regulation of leaf senescence. GO:0035864: response to potassium ion. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation.	 Other,  Coloration,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0975300	LOC_Os01g74410.2, LOC_Os01g74410.1				GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0003682 - chromatin binding, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0010150 - leaf senescence, GO:0009741 - response to brassinosteroid stimulus	TO:0002677 - brassinosteroid sensitivity, TO:0000303 - cold tolerance, TO:0000008 - potassium sensitivity, TO:0000249 - leaf senescence, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content	
15530	GAPC2	GAPDH, OsGAPDH, OsGapC2	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 2	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic GAPDH2, cytosolic glyceraldehyde-3-phosphate dehydrogenase 2	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC 2		4	Q7FAH2. D16096.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os04g0486600	LOC_Os04g40950.1, LOC_Os04g40950.2, LOC_Os04g40950.3				GO:0005618 - cell wall, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, GO:0008270 - zinc ion binding, GO:0006979 - response to oxidative stress, GO:0006096 - glycolysis, GO:0051287 - NAD or NADH binding, GO:0050661 - NADP or NADPH binding, GO:0046686 - response to cadmium ion, GO:0009506 - plasmodesma, GO:0005507 - copper ion binding, GO:0005739 - mitochondrion, GO:0005886 - plasma membrane, GO:0010224 - response to UV-B, GO:0045454 - cell redox homeostasis, GO:0048653 - anther development, GO:0042742 - defense response to bacterium, GO:0009507 - chloroplast, GO:0005730 - nucleolus	TO:0000601 - UV-B light sensitivity	PO:0001004 - anther development stage 
15531	UBQ5	RPS27a, OsUBQ5, OsRPS27a	UBIQUITIN 5	Ubiquitin 5, Monoubiquitin-tail protein 1, ribosomal protein S27, ribosomal protein small subunit 27	UBIQUITIN 5		1	Q9ARZ9 (Cleaved into the following 2 chains:Ubiquitin and 40S ribosomal protein S27a-1) (by UniProt). D15997. Monoubiquitin-tail protein 1 in Sasaki et al. 1994.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os01g0328400	LOC_Os01g22490.1				GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0003735 - structural constituent of ribosome, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0009506 - plasmodesma, GO:0006979 - response to oxidative stress, GO:0005794 - Golgi apparatus	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
15532	18S  rRNA		18S RIBOSOMAL RNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA				AK059783.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
15533	CCD8A	OsCCD8a, OsCCD8c, CCD8a, CCD8c	CAROTENOID CLEAVAGE DIOXYGENASE 8A	carotenoid cleavage dioxygenase 8a, CATOTENOID DIOXYGENASE 8a, D10like	CAROTENOID CLEAVAGE DIOXYGENASE 8A		1	Q93VD5. an ortholog of Arabidopsis MAX4/CCD8. OsCCD8a (Q93VD5) and OsCCD8c (Loc_Os01g38580) in Priya and Siva 2014. one of MAX4 orthologues.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0566500	LOC_Os01g38580.1, LOC_Os01g38580.2				GO:0046872 - metal ion binding, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009413 - response to flooding, GO:0051213 - dioxygenase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress	TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0000114 - flooding related trait, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0007632 - seed maturation stage , PO:0009006 - shoot system 
15535	_	OsRMR3, OsRMR1, RMR1, OsRING73, RING73	_	receptor-like membrane Ring-H2 3, receptor homology region-transmembrane domain-RING-H2 (RMR) protein 1, ReMembR-H2 Protein 1, RING-type E3 ubiquitin ligase 73			3	Q10R93. one of the Components of the Storage Protein Sorting Complex. OsRMR3 in Li et al. 2013.	 Seed - Physiological traits - Storage substances,  Biochemical character	Os03g0167500	LOC_Os03g07130.1, LOC_Os03g07130.2, LOC_Os03g07130.3, LOC_Os03g07130.4, LOC_Os03g07130.5				GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding, GO:0015031 - protein transport, GO:0031902 - late endosome membrane, GO:0000139 - Golgi membrane, GO:0032586 - protein storage vacuole membrane	TO:0002653 - endosperm storage protein content	
15536	_	OsRMR2, OsRING252, RING252	_	receptor homology region-transmembrane domain-RING-H2 (RMR) protein 2, ReMembR-H2 Protein 2, RING-type E3 ubiquitin ligase 252			8	Q69U49. one of the Components of the Storage Protein Sorting Complex.	 Seed - Physiological traits - Storage substances,  Biochemical character	Os08g0104300 	LOC_Os08g01360.1, LOC_Os08g01360.2, LOC_Os08g01360.3				GO:0032586 - protein storage vacuole membrane, GO:0016021 - integral to membrane, GO:0015031 - protein transport, GO:0031902 - late endosome membrane, GO:0008270 - zinc ion binding	TO:0002653 - endosperm storage protein content	
15537	_	OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33	_	Rp1-like 1, bacterial blight resistance-related gene 1, NBS-LRR protein rNBS33			5	JQ845900. a Nuclear-Localized CC-NB-LRR Gene. GEO database: GSE39767. AF516889.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0365300	LOC_Os05g30220.1				GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000429 - salt sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000432 - temperature response trait	
15538	TPS30	TPS, OsTPS30, TPS26, OsTPS26	TERPENE SYNTHASE 30	terpene synthase, terpene synthase 30	TERPENE SYNTHASE 30		8	OsTPS30 in Lee et al. 2014. TPS26 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os08g0167800	LOC_Os08g07080.1				GO:0010333 - terpene synthase activity, GO:0002213 - defense response to insect	TO:0000454 - stem borer resistance, TO:0000261 - insect damage resistance	
15539	_	OsCFR	_	"\"chloroplastic fructose 1, 6-bisphosphatase\", chloroplastic FruP2ase, \"fructose-1, 6-bisphosphatase plastidic isoform\", \"Plastidic Fructose-1, 6-Bisphosphatase\""			3	AB007194, EU370973. O64422.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0267300	LOC_Os03g16050.1				GO:0048046 - apoplast, GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0030388 - fructose 1,6-bisphosphate metabolic process, GO:0019253 - reductive pentose-phosphate cycle, GO:0010319 - stromule, GO:0009570 - chloroplast stroma, GO:0046872 - metal ion binding, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0005985 - sucrose metabolic process, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000495 - chlorophyll content, TO:0002657 - oxidative stress	
15540	MOC2	FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1, MOC2/FBP1	MONOCULM 2	cytosolic fructose 1, 6-bisphosphatase, cytosolic FruP2ase, monoculm 2, monoculm2, cytosolic fructose-1, 6-bisphosphatase 1	CYTOSOLIC FRUCTOSE-1,6-BISPHOSPHATASE 1	moc2	1	Q0JHF8.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0866400	LOC_Os01g64660.4, LOC_Os01g64660.1, LOC_Os01g64660.2, LOC_Os01g64660.3				GO:0005983 - starch catabolic process, GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0046872 - metal ion binding, GO:0030388 - fructose 1,6-bisphosphate metabolic process, GO:0015979 - photosynthesis, GO:0009414 - response to water deprivation, GO:0009750 - response to fructose stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005986 - sucrose biosynthetic process, GO:0005829 - cytosol, GO:0005634 - nucleus	TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000326 - leaf color, TO:0000515 - relative growth rate	
15541	IMPA1B	OsIMPA1B, IMPalpha1B, OsIMPalpha1B, Imp3, OsImpalpha1b, Impalpha1b	IMPORTIN ALPHA 1B	importin alpha 1b, importin alpha-1b			5	AB024311 (AB034311 in Jiang et al. 2001). Q9SLX0. AK100133. a cytoplasm/nuclear shuttle protein. GO:0061608: nuclear import signal receptor activity. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0155601	LOC_Os05g06350.1				GO:0006607 - NLS-bearing substrate import into nucleus, GO:0048471 - perinuclear region of cytoplasm, GO:0005634 - nucleus, GO:0006606 - protein import into nucleus, GO:0008565 - protein transporter activity, GO:0042742 - defense response to bacterium, GO:0005654 - nucleoplasm, GO:0005829 - cytosol, GO:0008139 - nuclear localization sequence binding	TO:0000203 - bacterial leaf streak disease resistance, TO:0000031 - silicon sensitivity, TO:0000175 - bacterial blight disease resistance	
15542	STOW-OS1	Stow-Os1	TRANSPOSON MITE STOWAWAY OS-1	Stowaway-Os1, Stowaway Os-1, MITE element Stowaway Os-1, Stowaway Os-1 MITE transposon, transposable element Stowaway Os-1				Stowaway-Os1 is located within intron 2 of the heat shock protein 82A gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15543	MASHU	Mashu	TRANSPOSON MITE MASHU	MITE element Mashu, Mashu MITE transposon, transposable element Mashu					 Other						GO:0032196 - transposition		
15544	IMPB1	Importin beta 1	IMPORTIN BETA 1	importin beta, importin beta 1				AB011270	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility						GO:0008565 - protein transporter activity, GO:0005643 - nuclear pore, GO:0006886 - intracellular protein transport, GO:0006913 - nucleocytoplasmic transport		
15545	IMPB2	Importin beta 2	IMPORTIN BETA 2	importin beta, importin beta 2				AB011271							GO:0006913 - nucleocytoplasmic transport, GO:0008565 - protein transporter activity, GO:0006886 - intracellular protein transport, GO:0005643 - nuclear pore		
15546	STOW-OS25	Stow-Os25	TRANSPOSON MITE STOWAWAY OS-25	Stowaway Os-25, MITE element Stowaway Os-25, Stowaway Os-25 MITE transposon, transposable element Stowaway Os-25					 Other						GO:0032196 - transposition		
15547	STOW-OS50	Stow-Os50	TRANSPOSON MITE STOWAWAY OS-50	Stowaway Os-50, MITE element Stowaway Os-50, Stowaway Os-50 MITE transposon, transposable element Stowaway Os-50					 Other						GO:0032196 - transposition		
15548	STOW-OS5	Stow-Os5	TRANSPOSON MITE STOWAWAY OS-5	Stowaway-Os5, Stowaway Os-5, MITE element Stowaway Os-5, Stowaway Os-5 MITE transposon, transposable element Stowaway Os-5			2	Stowaway-Os5 is located within 5' of the PCNA gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15549	STOW-OS6	Stow-Os6	TRANSPOSON MITE STOWAWAY OS-6	Stowaway-Os6, Stowaway-Os6, Stowaway Os-6, MITE element Stowaway Os-6, Stowaway Os-6 MITE transposon, transposable element Stowaway Os-6			2	Stowaway-Os6 is located within 5' of the PCNA gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15550	STOW-OS32	Stow-Os32	TRANSPOSON MITE STOWAWAY OS-32	Stowaway Os-32, MITE element Stowaway Os-32, Stowaway Os-32 MITE transposon, transposable element Stowaway Os-32					 Other						GO:0032196 - transposition		
15551	STOW-OS45	Stow-Os45	TRANSPOSON MITE STOWAWAY OS-45	Stowaway Os-45, MITE element Stowaway Os-45, Stowaway Os-45 MITE transposon, transposable element Stowaway Os-45					 Other						GO:0032196 - transposition		
15552	STOW-OS10	Stow-Os10	TRANSPOSON MITE STOWAWAY OS-10	Stowaway Os-10, MITE element Stowaway Os-10, Stowaway Os-10 MITE transposon, transposable element Stowaway Os-10					 Other						GO:0032196 - transposition		
15553	STOW-OS38	Stow-Os38	TRANSPOSON MITE STOWAWAY OS-38	Stowaway Os-38, MITE element Stowaway Os-38, Stowaway Os-38 MITE transposon, transposable element Stowaway Os-38					 Other						GO:0032196 - transposition		
15554	STOW-OS8	Stow-Os8	TRANSPOSON MITE STOWAWAY OS-8	Stowaway Os-8, MITE element Stowaway Os-8, Stowaway Os-8 MITE transposon, transposable element Stowaway Os-8					 Other						GO:0032196 - transposition		
15555	STOW-OS23	Stow-Os23	TRANSPOSON MITE STOWAWAY OS-23	Stowaway Os-23, MITE element Stowaway Os-23, Stowaway Os-23 MITE transposon, transposable element Stowaway Os-23					 Other						GO:0032196 - transposition		
15556	STOW-OS18	Stow-Os18	TRANSPOSON MITE STOWAWAY OS-18	Stowaway Os-18, MITE element Stowaway Os-18, Stowaway Os-18 MITE transposon, transposable element Stowaway Os-18					 Other						GO:0032196 - transposition		
15557	STOW-OS24	Stow-Os24	TRANSPOSON MITE STOWAWAY OS-24	Stowaway Os-24, MITE element Stowaway Os-24, Stowaway Os-24 MITE transposon, transposable element Stowaway Os-24					 Other						GO:0032196 - transposition		
15558	STOW-OS30	Stow-Os30	TRANSPOSON MITE STOWAWAY OS-30	Stowaway Os-30, MITE element Stowaway Os-30, Stowaway Os-30 MITE transposon, transposable element Stowaway Os-30					 Other						GO:0032196 - transposition		
15559	STOW-OS15	Stow-Os15	TRANSPOSON MITE STOWAWAY OS-15	Stowaway Os-15, MITE element Stowaway Os-15, Stowaway Os-15 MITE transposon, transposable element Stowaway Os-15					 Other						GO:0032196 - transposition		
15560	STOW-OS26	Stow-Os26	TRANSPOSON MITE STOWAWAY OS-26	Stowaway Os-26, MITE element Stowaway Os-26, Stowaway Os-26 MITE transposon, transposable element Stowaway Os-26					 Other						GO:0032196 - transposition		
15561	STOW-OS46	Stow-Os46	TRANSPOSON MITE STOWAWAY OS-46	Stowaway Os-46, MITE element Stowaway Os-46, Stowaway Os-46 MITE transposon, transposable element Stowaway Os-46					 Other						GO:0032196 - transposition		
15562	STOW-OS21	Stow-Os21	TRANSPOSON MITE STOWAWAY OS-21	Stowaway Os-21, MITE element Stowaway Os-21, Stowaway Os-21 MITE transposon, transposable element Stowaway Os-21					 Other						GO:0032196 - transposition		
15563	STOW-OS3	Stow-Os3	TRANSPOSON MITE STOWAWAY OS-3	Stowaway-Os3, Stowaway Os-3, MITE element Stowaway Os-3, Stowaway Os-3 MITE transposon, transposable element Stowaway Os-3			6	Stowaway-Os3 is located within intron 13 of OsWAXY gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15564	STOW-OS13	Stow-Os13	TRANSPOSON MITE STOWAWAY OS-13	Stowaway Os-13, MITE element Stowaway Os-13, Stowaway Os-13 MITE transposon, transposable element Stowaway Os-13					 Other						GO:0032196 - transposition		
15565	STOW-OS28	Stow-Os28	TRANSPOSON MITE STOWAWAY OS-28	Stowaway Os-28, MITE element Stowaway Os-28, Stowaway Os-28 MITE transposon, transposable element Stowaway Os-28					 Other						GO:0032196 - transposition		
15566	STOW-OS34	Stow-Os34	TRANSPOSON MITE STOWAWAY OS-34	Stowaway Os-34, MITE element Stowaway Os-34, Stowaway Os-34 MITE transposon, transposable element Stowaway Os-34					 Other						GO:0032196 - transposition		
15567	STOW-OS9	Stow-Os9	TRANSPOSON MITE STOWAWAY OS-9	Stowaway Os-9, MITE element Stowaway Os-9, Stowaway Os-9 MITE transposon, transposable element Stowaway Os-9					 Other						GO:0032196 - transposition		
15568	STOW-OS52	Stow-Os52	TRANSPOSON MITE STOWAWAY OS-52	Stowaway Os-52, MITE element Stowaway Os-52, Stowaway Os-52 MITE transposon, transposable element Stowaway Os-52					 Other						GO:0032196 - transposition		
15569	STOW-OS51	Stow-Os51	TRANSPOSON MITE STOWAWAY OS-51	Stowaway Os-51, MITE element Stowaway Os-51, Stowaway Os-51 MITE transposon, transposable element Stowaway Os-51					 Other						GO:0032196 - transposition		
15570	STOW-OS37	Stow-Os37	TRANSPOSON MITE STOWAWAY OS-37	Stowaway Os-37, MITE element Stowaway Os-37, Stowaway Os-37 MITE transposon, transposable element Stowaway Os-37					 Other						GO:0032196 - transposition		
15571	STOW-OS16	Stow-Os16	TRANSPOSON MITE STOWAWAY OS-16	Stowaway Os-16, MITE element Stowaway Os-16, Stowaway Os-16 MITE transposon, transposable element Stowaway Os-16					 Other						GO:0032196 - transposition		
15572	STOW-OS35	Stow-Os35	TRANSPOSON MITE STOWAWAY OS-35	Stowaway Os-35, MITE element Stowaway Os-35, Stowaway Os-35 MITE transposon, transposable element Stowaway Os-35					 Other						GO:0032196 - transposition		
15573	STOW-OS49	Stow-Os49	TRANSPOSON MITE STOWAWAY OS-49	Stowaway Os-49, MITE element Stowaway Os-49, Stowaway Os-49 MITE transposon, transposable element Stowaway Os-49					 Other						GO:0032196 - transposition		
15574	STOW-OS20	Stow-Os20	TRANSPOSON MITE STOWAWAY OS-20	Stowaway Os-20, MITE element Stowaway Os-20, Stowaway Os-20 MITE transposon, transposable element Stowaway Os-20					 Other						GO:0032196 - transposition		
15575	STOW-OS42	Stow-Os42	TRANSPOSON MITE STOWAWAY OS-42	Stowaway Os-42, MITE element Stowaway Os-42, Stowaway Os-42 MITE transposon, transposable element Stowaway Os-42					 Other						GO:0032196 - transposition		
15576	STOW-OS12	Stow-Os12	TRANSPOSON MITE STOWAWAY OS-12	Stowaway Os-12, MITE element Stowaway Os-12, Stowaway Os-12 MITE transposon, transposable element Stowaway Os-12					 Other						GO:0032196 - transposition		
15577	STOW-OS29	Stow-Os29	TRANSPOSON MITE STOWAWAY OS-29	Stowaway Os-29, MITE element Stowaway Os-29, Stowaway Os-29 MITE transposon, transposable element Stowaway Os-29					 Other						GO:0032196 - transposition		
15578	STOW-OS14	Stow-Os14	TRANSPOSON MITE STOWAWAY OS-14	Stowaway Os-14, MITE element Stowaway Os-14, Stowaway Os-14 MITE transposon, transposable element Stowaway Os-14					 Other						GO:0032196 - transposition		
15579	STOW-OS11	Stow-Os11	TRANSPOSON MITE STOWAWAY OS-11	Stowaway Os-11, MITE element Stowaway Os-11, Stowaway Os-11 MITE transposon, transposable element Stowaway Os-11					 Other						GO:0032196 - transposition		
15580	MAR7	Osmar7	TC1/MARINER TRANSPOSABLE ELEMENT 7	Mariner 7, mariner-like element 7, Tc1/Mariner-like element 7					 Other						GO:0032196 - transposition		
15581	MAR27I	Osmar27i	TC1/MARINER TRANSPOSABLE ELEMENT 27I	Mariner 27i, mariner-like element 27i, Tc1/Mariner-like element 27i					 Other						GO:0032196 - transposition		
15582	MAR29I	Osmar29i	TC1/MARINER TRANSPOSABLE ELEMENT 29I	Mariner 29i, mariner-like element 29i, Tc1/Mariner-like element 29i					 Other						GO:0032196 - transposition		
15583	MAR8A	Osmar8a	TC1/MARINER TRANSPOSABLE ELEMENT 8A	Mariner 8a, mariner-like element 8a, Tc1/Mariner-like element 8a					 Other						GO:0032196 - transposition		
15584	MAR32I	Osmar32i	TC1/MARINER TRANSPOSABLE ELEMENT 32I	Mariner 32i, mariner-like element 32i, Tc1/Mariner-like element 32i					 Other						GO:0032196 - transposition		
15585	MAR19	Osmar19	TC1/MARINER TRANSPOSABLE ELEMENT 19	Mariner 19, mariner-like element 19, Tc1/Mariner-like element 19					 Other						GO:0032196 - transposition		
15586	MAR11	Osmar11	TC1/MARINER TRANSPOSABLE ELEMENT 11	Mariner 11, mariner-like element 11, Tc1/Mariner-like element 11					 Other						GO:0032196 - transposition		
15587	MAR14A	Osmar14A	TC1/MARINER TRANSPOSABLE ELEMENT 14A	Mariner 14A, mariner-like element 14A, Tc1/Mariner-like element 14A					 Other						GO:0032196 - transposition		
15588	MAR14B	Osmar14B	TC1/MARINER TRANSPOSABLE ELEMENT 14B	Mariner 14B, mariner-like element 14B, Tc1/Mariner-like element 14B					 Other						GO:0032196 - transposition		
15589	MAR14C	Osmar14C	TC1/MARINER TRANSPOSABLE ELEMENT 14C	Mariner 14C, mariner-like element 14C, Tc1/Mariner-like element 14C					 Other						GO:0032196 - transposition		
15590	MAR16	Osmar16	TC1/MARINER TRANSPOSABLE ELEMENT 16	Mariner 16, mariner-like element 16, Tc1/Mariner-like element 16					 Other						GO:0032196 - transposition		
15591	MAR5A	Osmar5A	TC1/MARINER TRANSPOSABLE ELEMENT 5A	Mariner 5A, mariner-like element 5A, Tc1/Mariner-like element 5A					 Other						GO:0032196 - transposition		
15592	MAR2	Osmar2	TC1/MARINER TRANSPOSABLE ELEMENT 2	Mariner 2, mariner-like element 2, Tc1/Mariner-like element 2					 Other						GO:0032196 - transposition		
15593	MAR24	Osmar24	TC1/MARINER TRANSPOSABLE ELEMENT 24	Mariner 24, mariner-like element 24, Tc1/Mariner-like element 24					 Other						GO:0032196 - transposition		
15594	MAR24BI	Osmar24Bi	TC1/MARINER TRANSPOSABLE ELEMENT 24BI	Mariner 24Bi, mariner-like element 24Bi, Tc1/Mariner-like element 24Bi					 Other						GO:0032196 - transposition		
15595	MAR21	Osmar21	TC1/MARINER TRANSPOSABLE ELEMENT 21	Mariner 21, mariner-like element 21, Tc1/Mariner-like element 21					 Other						GO:0032196 - transposition		
15596	MAR28I	Osmar28i	TC1/MARINER TRANSPOSABLE ELEMENT 28I	Mariner 28i, mariner-like element 28i, Tc1/Mariner-like element 28i					 Other						GO:0032196 - transposition		
15597	MAR17A	Osmar17A	TC1/MARINER TRANSPOSABLE ELEMENT 17A	Mariner 17A, mariner-like element 17A, Tc1/Mariner-like element 17A					 Other						GO:0032196 - transposition		
15598	MAR13	Osmar13	TC1/MARINER TRANSPOSABLE ELEMENT 13	Mariner 13, mariner-like element 13, Tc1/Mariner-like element 13					 Other						GO:0032196 - transposition		
15599	MAR9A	Osmar9A	TC1/MARINER TRANSPOSABLE ELEMENT 9A	Mariner 9A, mariner-like element 9A, Tc1/Mariner-like element 9A					 Other						GO:0032196 - transposition		
15600	MAR9B	Osmar9B	TC1/MARINER TRANSPOSABLE ELEMENT 9B	Mariner 9B, mariner-like element 9B, Tc1/Mariner-like element 9B					 Other						GO:0032196 - transposition		
15601	MAR10A	Osmar10A	TC1/MARINER TRANSPOSABLE ELEMENT 10A	Mariner 10A, mariner-like element 10A, Tc1/Mariner-like element 10A					 Other						GO:0032196 - transposition		
15602	MAR18I	Osmar18i	TC1/MARINER TRANSPOSABLE ELEMENT 18I	Mariner 18i, mariner-like element 18i, Tc1/Mariner-like element 18i					 Other						GO:0032196 - transposition		
15603	STOW-OS4	Stow-Os4	TRANSPOSON MITE STOWAWAY OS-4	Stowaway-Os4, Stowaway Os-4, MITE element Stowaway Os-4, Stowaway Os-4 MITE transposon, transposable element Stowaway Os-4			6	Stowaway-Os4 is located within 3' of OsWAXY gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15604	STOW-OS2	Stow-Os2	TRANSPOSON MITE STOWAWAY OS-2	Stowaway-Os2, Stowaway Os-2, MITE element Stowaway Os-2, Stowaway Os-2 MITE transposon, transposable element Stowaway Os-2			1	Stowaway-Os2 is located within 3' of the alpha amylase C gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15605	STOW-OS7	Stow-Os7	TRANSPOSON MITE STOWAWAY OS-7	Stowaway-Os7, Stowaway Os-7, MITE element Stowaway Os-7, Stowaway Os-7 MITE transposon, transposable element Stowaway Os-7			9	Stowaway-Os7 is located within intron 2 of the alpha amylase 3A gene of O. sativa (Bureau et al. 1994).	 Other						GO:0032196 - transposition		
15606	MYB30	OsMYB30, OsMYB5P, MYB5P, OsMYB13a, MYB13a, Os2R_MYB26, 2R_MYB26, OsMYB30C, MYB30C	MYB TRANSCRIPTION FACTOR 30	Myb transcription factor 4 paralog, OsMyb4 paralog, R2R3-MYB Transcription Factor 26	MYB TRANSCRIPTION FACTOR 30	osmyb30, osmyb30-4, osmyb30-7, osmyb30-11, osmyb30-15, osmyb30-17, osmyb30-25	2	Q6K1S6. OsMYB5P in Yang et al. 2018, Liu et al. 2020. a MAMP-Responsive MYB Transcription Factor. OsMYB13a in Zhao et al. 2019. OsMYB30C in Sun et al. 2024. Wall-Associated regulator. regulated by osa-miR528-5p and novel13_mature, indirectly ( Liu et al. 2020). GO:1900367: positive regulation of defense response to insect. GO:2000904: regulation of starch metabolic process. GO:0044212: transcription regulatory region DNA binding. TO:0020102: phosphate content. 	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os02g0624300	LOC_Os02g41510.1				GO:0009723 - response to ethylene stimulus, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009808 - lignin metabolic process, GO:0052386 - cell wall thickening, GO:0002213 - defense response to insect, GO:0042594 - response to starvation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005983 - starch catabolic process, GO:0048367 - shoot development, GO:0048364 - root development, GO:0032502 - developmental process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0030154 - cell differentiation	TO:0000227 - root length, TO:0000424 - brown planthopper resistance, TO:0000207 - plant height, TO:0000291 - carbohydrate content, TO:0000357 - growth and development trait, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000179 - biotic stress trait, TO:0000731 - lignin content, TO:0000074 - blast disease, TO:0000168 - abiotic stress trait, TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0000675 - ferulic acid content	PO:0025034 - leaf 
15607	2R_MYB80	Os2R_MYB80	R2R3-MYB TRANSCRIPTION FACTOR 80	OsMyb4-like protein, R2R3-MYB Transcription Factor 80	R2R3-MYB TRANSCRIPTION FACTOR 80		8			Os08g0486300	LOC_Os08g37970.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus		
15608	_	OsMYB58/63-L, MYB58/63-L, OsMYB58/63a, MYB58/63a, Os2R_MYB29, 2R_MYB29, OsMYB58, MYB58	_	OsMyb4-like protein, R2R3-MYB Transcription Factor 29			2	OsMYB58/63a in Zhao et al. 2019. OsMYB58 in Baek et al. 2024. TO:0020102: phosphate content. GO:2000280: regulation of root development. GO:2000023: regulation of lateral root development. TO:0001051: root hair density. GO:0080147: root hair cell development.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0695200	LOC_Os02g46780.1				GO:0048527 - lateral root development, GO:0003682 - chromatin binding, GO:0010966 - regulation of phosphate transport, GO:0048364 - root development, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0055062 - phosphate ion homeostasis, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0048367 - shoot development, GO:0048767 - root hair elongation	TO:0000516 - relative root length, TO:0000227 - root length, TO:0001013 - lateral root number, TO:0001006 - adventitious root number, TO:0002665 - root hair length, TO:0000654 - shoot development trait, TO:0000656 - root development trait, TO:0000102 - phosphorus sensitivity, TO:0000357 - growth and development trait, TO:0000586 - seminal root length, TO:0000571 - shoot fresh weight, TO:0000578 - root fresh weight, TO:0000019 - seedling height, TO:0000511 - phosphorus uptake, TO:0001012 - lateral root length	PO:0007520 - root development stage , PO:0025527 - shoot system development stage 
15609	DU12	du12(t)	DULL ENDOSPERM 12	Dull endosperm-12			6	A single recessive gene du12(t) that leads to thelow amylose character of Milyang262 was mapped to an 840-kb region on the distal region of the long arm of chromosome 6, delimited by SSR markers RM20662 and RM412, and co-segregated by RM3765 and RM176.	 Seed - Physiological traits - Storage substances							TO:0000196 - amylose content, TO:0000105 - dull endosperm	
15611	_	OsHsp90, HSP90	_	rice 90kDa heat shock protein, heat-shock protein 90, heat-shock protein 82, heat shock protein 82, heat-shock protein 86			9	D22707, D16084, D15298. Q07078. HSP82 and Hsp86 in Sasaki et al. 1994.	 Tolerance and resistance - Stress tolerance	Os09g0482550/Os09g0482600	LOC_Os09g30418.1				GO:0005774 - vacuolar membrane, GO:0048046 - apoplast, GO:0009570 - chloroplast stroma, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005794 - Golgi apparatus, GO:0005634 - nucleus, GO:0005618 - cell wall, GO:0006950 - response to stress, GO:0006457 - protein folding, GO:0005737 - cytoplasm, GO:0005524 - ATP binding		
15612	_	OsVHA-a1	_	vacuolar H+-ATPase subunit a1	_				 Tolerance and resistance - Stress tolerance,  Biochemical character							TO:0006001 - salt tolerance	
15613	VIP2	IPI1, RIP1, OsVIP2, OsIPI1, OsRIP1, OsRING103, RING103	_	Putative VIP2 protein, IPA1 INTERACTING PROTEIN1, IPA1 INTERACTING PROTEIN 1, ROD1 interacting protein 1, RING-type E3 ubiquitin ligase 103		ipi1, ipi1-1, CR-rip1	1	Q5Z8R1. a RING-finger E3 ligase.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os01g0350900 	LOC_Os01g24880.1, LOC_Os01g24880.2				GO:0004842 - ubiquitin-protein ligase activity, GO:0000209 - protein polyubiquitination, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000017 - anatomy and morphology related trait, TO:0000371 - yield trait, TO:0000346 - tiller number, TO:0006032 - panicle size, TO:0000074 - blast disease, TO:0000437 - male sterility	PO:0025034 - leaf 
15614	ACL-D	OsZHD1, ZHD1, OsACL-D, ZHD_G6, OsZHD_G6	ABAXIALLY CURLED AND DROOPING LEAF	zinc finger homeodomain class homeobox transcription factor 1, abaxially curled and drooping leaf, Zinc-finger with homeodomain gene 6	ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 1	oszhd1, oszhd1-1, acl-d	9	C97855. Q6YXH5. one of  four candidate genes fro qLFR9.1.  TO:0006064: rolled leaf. GO:0000976: transcription cis-regulatory region binding.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Vegetative organ - Leaf	Os09g0466400	LOC_Os09g29130.1				GO:0048366 - leaf development, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009793 - embryonic development ending in seed dormancy, GO:0046872 - metal ion binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0001012 - lateral root length, TO:0002681 - leaf curling, TO:0000655 - leaf development trait, TO:0000068 - lodging incidence	PO:0000002 - anther wall 
15615	ZHD2	OsZHD2	_	zinc finger homeodomain class homeobox transcription factor 2		oszhd2, oszhd2-1, oszhd2-2	8	Q6ZB90. GO:2000280: regulation of root development. TO:0001041: root yield. TO:0006064: rolled leaf.	 Vegetative organ - Root,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os08g0479400	LOC_Os08g37400.1				GO:0048364 - root development, GO:0003677 - DNA binding, GO:0048366 - leaf development, GO:0010365 - positive regulation of ethylene biosynthetic process	TO:0002681 - leaf curling, TO:0001013 - lateral root number, TO:0000655 - leaf development trait, TO:0000656 - root development trait, TO:0000396 - grain yield, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000586 - seminal root length	PO:0007520 - root development stage , PO:0000025 - root tip , PO:0020148 - shoot apical meristem 
15616	ZHD3	OsZHD3	ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 3	zinc finger homeodomain class homeobox transcription factor 3	ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 3		12	Q2QW44.		Os12g0208900	LOC_Os12g10630.1				GO:0003677 - DNA binding		
15617	_	OsZHD4	_	zinc finger homeodomain class homeobox transcription factor 4			11	Q53N87.		Os11g0243300	LOC_Os11g13930.1				GO:0003677 - DNA binding		
15618	ZHD5	OsZHD5	ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 5	zinc finger homeodomain class homeobox transcription factor 5	ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 5		1	Q5VM82.		Os01g0635550/Os01g0635600	LOC_Os01g44430.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0046872 - metal ion binding		
15619	_	OsZHD6	_	zinc finger homeodomain class homeobox transcription factor 6			5	Q688U3.		Os05g0579300	LOC_Os05g50310.1				GO:0003677 - DNA binding		
15620	_	OsZHD7	_	zinc finger homeodomain class homeobox transcription factor 7			2	Q8S3Q9.		Os02g0706600	LOC_Os02g47770.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
15621	_	OsZHD8	_	zinc finger homeodomain class homeobox transcription factor 8			4	Q7X7N3.		Os04g0434500	LOC_Os04g35500.1				GO:0003677 - DNA binding		
15622	ZHD9	OsZHD9, ZHD_G15, OsZHD_G15	ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 9	zinc finger homeodomain class homeobox transcription factor 9, Zinc-finger with homeodomain gene G15	ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 9		9	Q6ER21. GO:0000976: transcription cis-regulatory region binding.		Os09g0414600	LOC_Os09g24820.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0046872 - metal ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity		PO:0000002 - anther wall 
15623	_	OsZHD10	_	zinc finger homeodomain class homeobox transcription factor 10			11	LOC_Os11g34010.			LOC_Os11g34010						
15624	_	OsZHD11	_	zinc finger homeodomain class homeobox transcription factor 11			3	Q10DV5.		Os03g0718500	LOC_Os03g50920.1				GO:0003677 - DNA binding		
15626	_	OsHPR1, HPR1	_	hydroxypyruvate reductase 1, peroxisomal HPR1		hpr1	2		 Biochemical character	Os02g0101500 	LOC_Os02g01150.1, LOC_Os02g01150.2, LOC_Os02g01150.3, LOC_Os02g01150.4				GO:0051287 - NAD or NADH binding, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		
15627	_	OsHPR2, HPR2, OsHPR2-1, OsHPR2-2	_	hydroxypyruvate reductase 2, cytosolic HPR		hpr2	1		 Biochemical character	Os01g0228600	LOC_Os01g12830.1, LOC_Os01g12830.2				GO:0005829 - cytosol, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0051287 - NAD or NADH binding		
15628	_	OsDG2	_	delayed greening 2		osdg2	2	a chloroplast-targeted glycine-rich protein (GRP).	 Coloration - Chlorophyll	Os02g0606000	LOC_Os02g39340.1, LOC_Os02g39340.2					TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content	
15629	_	OsKTN80b	_	katanin P80b, Katanin regulatory subunit P80b			4	a katanin P80 ortholog. a microtubule-severing enzyme.		Os04g0677700	LOC_Os04g58130.1				GO:0051013 - microtubule severing, GO:0008352 - katanin complex		
15630	_	OsKTN60	_	katanin P60, Katanin catalytic subunit P60			1	a microtubule-severing enzyme.	 Vegetative organ - Root	Os01g0683100 	LOC_Os01g49000.1				GO:0005737 - cytoplasm, GO:0009832 - plant-type cell wall biogenesis, GO:0010091 - trichome branching, GO:0043622 - cortical microtubule organization, GO:0051013 - microtubule severing, GO:0005813 - centrosome, GO:0005524 - ATP binding, GO:0008568 - microtubule-severing ATPase activity, GO:0005874 - microtubule, GO:0005819 - spindle, GO:0009825 - multidimensional cell growth	TO:0000227 - root length	
15631	SLB1	OsSLB1, Os900/CYP711A2, Os900, CYP711A2, OsCYP711A2, OsCO, CO	STRIGOLACTONE BIOSYNTHESIS 1	SL biosynthesis gene 1, Cytochrome P450 711A2	CYTOCHROME P450 711A2	os900	1	JX235697. a cytochrome P450 gene with high homology to the Arabidopsis SL biosynthesis gene, MAX1. one of MAX1 orthologues. Homolog of the Arabidopsis MAX1 for strigoractone biosynthesis. GO:1901698: response to nitrogen compound. GO:1901601: strigolactone biosynthetic process. GO:1902347: response to strigolactone	 Tolerance and resistance,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0700900	LOC_Os01g50530.1, LOC_Os01g50520.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0042594 - response to starvation, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000444 - parasitic weed, TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000102 - phosphorus sensitivity, TO:0000476 - growth hormone content, TO:0000401 - plant growth hormone sensitivity, TO:0000480 - nutrient sensitivity, TO:0000011 - nitrogen sensitivity	
15632	SLB2	CYP711A1, OsCYP711A1, Os1400/CYP711A3, Os1400, CYP711A3, OsCYP711A3, OsMAX1-1400, MAX1-1400	STRIGOLACTONE BIOSYNTHESIS 2	SL biosynthesis gene 2, Cytochrome P450 711A3	CYTOCHROME P450 711A3	os1400	1	a cytochrome P450 gene with high homology to the Arabidopsis SL biosynthesis gene, MAX1. JX235696. Present in QTL qSTRIGOLACTONE BIOSYNTHESIS (qSLB1.1) identified in Azucena x Bala RIL population. one of MAX1 orthologues. CYP711A3 in Yoneyama et al. 2018, Mashiguchi et al. 2023. GO:1901601: strigolactone biosynthetic process. GO:1902347: response to strigolactone	 Biochemical character,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os01g0701400 	LOC_Os01g50570.1, LOC_Os01g50580.1				GO:0042594 - response to starvation, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000444 - parasitic weed, TO:0000401 - plant growth hormone sensitivity, TO:0000476 - growth hormone content, TO:0000329 - tillering ability, TO:0000346 - tiller number	
15633	_	OsMY1	_	myosin 1				DQ641916.									
15634	_		_	Sm gene, Sm family protein			1		 Other,  Tolerance and resistance - Insect resistance	Os01g0111200	LOC_Os01g02090.1, LOC_Os01g02090.2				GO:0033962 - cytoplasmic mRNA processing body assembly, GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA, GO:0005829 - cytosol, GO:0010606 - positive regulation of cytoplasmic mRNA processing body assembly, GO:0017148 - negative regulation of translation	TO:0000261 - insect damage resistance	
15635	_		_	Sm gene, Sm family protein			1	Q9LGE6.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0256900	LOC_Os01g15310.1				GO:0006397 - mRNA processing, GO:0005681 - spliceosomal complex, GO:0003723 - RNA binding, GO:0008380 - RNA splicing	TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance	
15636	_		_	Sm gene, Sm family protein			1			Os01g0866700	LOC_Os01g64690.1				GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex		
15637	_		_	Sm gene, Sm family protein			1		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Other	Os01g0967000	LOC_Os01g73604.1				GO:0005506 - iron ion binding, GO:0008380 - RNA splicing, GO:0030532 - small nuclear ribonucleoprotein complex, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000261 - insect damage resistance	
15638	_		_	Sm gene, Sm family protein			2			Os02g0102700	LOC_Os02g01250.1				GO:0030529 - ribonucleoprotein complex, GO:0019013 - viral nucleocapsid		
15639	_		_	Sm gene, Sm family protein, Small nuclear ribonucleoprotein E			2	D15561.	 Other	Os02g0126700	LOC_Os02g03440.1				GO:0019013 - viral nucleocapsid, GO:0005681 - spliceosomal complex, GO:0000398 - nuclear mRNA splicing, via spliceosome		
15640	_		_	Sm gene, Sm family protein			2		 Other	Os02g0177500	LOC_Os02g08090.1, LOC_Os02g08090.2				GO:0006396 - RNA processing, GO:0030529 - ribonucleoprotein complex, GO:0019013 - viral nucleocapsid, GO:0005634 - nucleus		
15641	_		_	Sm gene, Sm family protein, smD small nucler ribonucleoprotein			2	D29731.		Os02g0586500	LOC_Os02g37430.1				GO:0005829 - cytosol, GO:0005774 - vacuolar membrane, GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex		
15642	_		_	Sm gene, Sm family protein			3			Os03g0240800	LOC_Os03g13760.1, LOC_Os03g13760.2				GO:0005730 - nucleolus, GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex, GO:0016604 - nuclear body, GO:0005829 - cytosol		
15643	_		_	Sm gene, Sm family protein			3		 Tolerance and resistance - Disease resistance	Os03g0410900	LOC_Os03g29740.1				GO:0030529 - ribonucleoprotein complex, GO:0019013 - viral nucleocapsid, GO:0005829 - cytosol, GO:0005730 - nucleolus	TO:0000439 - fungal disease resistance	
15644	_		_	Sm gene, Sm family protein			4			Os04g0388900	LOC_Os04g31950.1						
15645	_		_	Sm gene, Sm family protein			4		 Tolerance and resistance - Stress tolerance	Os04g0445800	LOC_Os04g36810.1				GO:0000932 - cytoplasmic mRNA processing body, GO:0016070 - RNA metabolic process	TO:0000276 - drought tolerance	
15646	_		_	Sm gene, Sm family protein			4	LOC_Os04g39444.			LOC_Os04g39444						
15647	_		_	Sm gene, Sm family protein			5			Os05g0314100	LOC_Os05g24970.1, LOC_Os05g24970.2, LOC_Os05g24970.3				GO:0005829 - cytosol, GO:0019013 - viral nucleocapsid, GO:0005730 - nucleolus, GO:0008380 - RNA splicing, GO:0030532 - small nuclear ribonucleoprotein complex		
15648	_		_	Sm gene, Sm family protein			5			Os05g0389300	LOC_Os05g32310.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus		
15649	_		_	Sm gene, Sm family protein			5		 Tolerance and resistance - Insect resistance	Os05g0594900	LOC_Os05g51650.1					TO:0000261 - insect damage resistance	
15650	_		_	Sm gene, Sm family protein			6		 Tolerance and resistance - Insect resistance	Os06g0496000	LOC_Os06g30060.1, LOC_Os06g30060.2					TO:0000261 - insect damage resistance	
15651	_		_	Sm gene, Sm family protein			6			Os06g0677600	LOC_Os06g46390.1				GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex		
15652	_		_	Sm gene, Sm family protein			7			Os07g0166600	LOC_Os07g07220.1				GO:0005634 - nucleus, GO:0030529 - ribonucleoprotein complex, GO:0003723 - RNA binding		
15653	_		_	Sm gene, Sm family protein			7			Os07g0608700	LOC_Os07g41790.2				GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex		
15654	_		_	Sm gene, Sm family protein			8		 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os08g0151400	LOC_Os08g05530.1				GO:0005681 - spliceosomal complex, GO:0005829 - cytosol, GO:0000398 - nuclear mRNA splicing, via spliceosome	TO:0000168 - abiotic stress trait, TO:0000175 - bacterial blight disease resistance	
15655	_		_	Sm gene, Sm family protein			8	LOC_Os08g05850 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Other						GO:0005829 - cytosol, GO:0006397 - mRNA processing		
15656	_		_	Sm gene, Sm family protein			8			Os08g0177700	LOC_Os08g08040.1						
15657	_		_	Sm gene, Sm family protein			11		 Tolerance and resistance - Disease resistance,  Other	Os11g0657300	LOC_Os11g43620.1, LOC_Os11g43620.2				GO:0006396 - RNA processing, GO:0030529 - ribonucleoprotein complex, GO:0005634 - nucleus, GO:0019013 - viral nucleocapsid	TO:0000439 - fungal disease resistance	
15658	ASL1	OsASL1, OsASL1.1, OsASL1.2, OsAL1, red1	ARGININOSUCCINATE LYASE 1	argininosuccinate lyase 1, root elongation defect 1	ARGININOSUCCINATE LYASE 1	osred1, osasl1.1, osasl1.2	3	ASL1 has two distinct transcripts, ASL1.1 and ASL1.2, which result from different transcription start sites.	 Vegetative organ - Root,  Biochemical character	Os03g0305500	LOC_Os03g19275.1, LOC_Os03g19280.1				GO:0009570 - chloroplast stroma, GO:0004056 - argininosuccinate lyase activity, GO:0048364 - root development, GO:0042450 - arginine biosynthetic process via ornithine	TO:0000227 - root length, TO:0000656 - root development trait	PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage 
15659	ALBA1	OsAlba1, Alba1	ACETYLATION LOWERS BINDING AFFINITY 1	acetylation lowers binding affinity protein 1, acetylation lowers binding affinity 1, Alba family protein 1			1	a dehydration-responsive nuclear protein.	 Tolerance and resistance - Stress tolerance	Os01g0173100 	LOC_Os01g07810.1, LOC_Os01g07810.2, LOC_Os01g07810.3				GO:0003676 - nucleic acid binding, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
15660	_	OsREX1-S	_	required for excision 1-S			7		 Other,  Tolerance and resistance - Stress tolerance	Os07g0573600 	LOC_Os07g38600.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0000439 - core TFIIH complex, GO:0006289 - nucleotide-excision repair	TO:0000601 - UV-B light sensitivity, TO:0000168 - abiotic stress trait	
15661	_	OsMOGS	_	mannosyl-oligosaccharide glucosidase		osmogs	1		 Vegetative organ - Root,  Biochemical character	Os01g0921200	LOC_Os01g69210.1, LOC_Os01g69210.2				GO:0004573 - mannosyl-oligosaccharide glucosidase activity, GO:0009311 - oligosaccharide metabolic process	TO:0002672 - auxin content, TO:0000656 - root development trait	
15662	CHALK5	Chalk5, OsChalk5	_	Pyrophosphate-energized vacuolar membrane proton pump		Chalk5MH, Chalk5ZS	5	a vacuolar H+-translocating pyrophosphatase. EC 3.6.1.1.	 Seed - Physiological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Grain quality,  Biochemical character	Os05g0156900	LOC_Os05g06480.1				GO:0016020 - membrane, GO:0004427 - inorganic diphosphatase activity, GO:0009678 - hydrogen-translocating pyrophosphatase activity, GO:0015992 - proton transport, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000266 - chalky endosperm	
15663	_	OsETOL1, OsSTA97, ETOL1, STA97, OsBTBT1, BTBT1	_	ETHYLENE OVERPRODUCER 1-like gene 1, BTB-type E3 ubiquitin ligase T1		osetol1, osetol1-1, osetol1-2, etol1-1	3	GO:2000069: regulation of post-embryonic root development. LOC_Os03g18360. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0294700	LOC_Os03g18360.1				GO:0017145 - stem cell division, GO:0010364 - regulation of ethylene biosynthetic process, GO:0016036 - cellular response to phosphate starvation, GO:0008361 - regulation of cell size, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process	TO:0000276 - drought tolerance, TO:0000227 - root length, TO:0000524 - submergence tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009066 - anther 
15664	_	OsETOL2, OsBTBT2, BTBT2	_	ETHYLENE OVERPRODUCER 1-like gene 2, BTB-type E3 ubiquitin ligase T2			7			Os07g0178100	LOC_Os07g08120.1, LOC_Os07g08120.2				GO:0010364 - regulation of ethylene biosynthetic process		
15665	_	OsETOL3, OsBTBT3, BTBT3	_	ETHYLENE OVERPRODUCER 1-like gene 3, BTB-type E3 ubiquitin ligase T3			11			Os11g0585900	LOC_Os11g37520.1						
15666	ACS1	OsACS1	ACYL-COA SYNTHETASE 1	acyl-CoA synthetase 1, acyl:coenzyme A synthetase 1	ACYL-COA SYNTHETASE 1		3	Q0DV32. 	 Biochemical character	Os03g0152400	LOC_Os03g05780.1				GO:0004321 - fatty-acyl-CoA synthase activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0005524 - ATP binding, GO:0016874 - ligase activity		
15667	_	OsACS2	_	acyl-CoA synthetase 2, type 2 ACS		osacs2, osacs2-1, osacs2-2	10	Q336M7. a rate-limiting enzyme for ethylene biosynthesis.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0578950	LOC_Os10g42800.1				GO:0016874 - ligase activity, GO:0005524 - ATP binding	TO:0000476 - growth hormone content, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance	
15668	_	OsACS3	_	acyl-CoA synthetase 3			8	Q6YYZ2.	 Biochemical character	Os08g0143300	LOC_Os08g04770.1				GO:0005524 - ATP binding, GO:0016874 - ligase activity		
15669	ACS4	OsACS4, OsOPCL1, OPCL1	ACYL-COA SYNTHETASE 4	acyl-CoA synthetase 4, OPC-8:0 CoA ligase 1	ACYL-COA SYNTHETASE 4		3	Q10S72. GO:0106290: trans-cinnamate-CoA ligase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0132000	LOC_Os03g04000.1				GO:0005524 - ATP binding, GO:0009698 - phenylpropanoid metabolic process, GO:0016405 - CoA-ligase activity, GO:0016207 - 4-coumarate-CoA ligase activity, GO:0005777 - peroxisome, GO:0016874 - ligase activity, GO:0009695 - jasmonic acid biosynthetic process, GO:0009611 - response to wounding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
15670	_	OsACS5, ACS5, 4ACS5, Os4ACS5	_	acyl-CoA synthetase 5			1	Q7F1X5.	 Biochemical character	Os01g0901500	LOC_Os01g67530.1				GO:0005524 - ATP binding, GO:0009695 - jasmonic acid biosynthetic process, GO:0004321 - fatty-acyl-CoA synthase activity, GO:0016874 - ligase activity		
15671	ACS6	OsACS6, 4ACS6, Os4ACS6	ACYL-COA SYNTHETASE 6	acyl-CoA synthetase 6	ACYL-COA SYNTHETASE 6		1	Q8RU95. 4CL in Gu et al. 2022, Ding et al. 2023.	 Biochemical character	Os01g0901600	LOC_Os01g67540.1				GO:0016874 - ligase activity, GO:0005524 - ATP binding		
15672	_	OsACS7, ACS7	_	acyl-CoA synthetase 7			7	Q69RG7.	 Biochemical character	Os07g0280200	LOC_Os07g17970.1, LOC_Os07g17970.2				GO:0016874 - ligase activity, GO:0005524 - ATP binding		
15673	_	OsACS8	_	acyl-CoA synthetase 8			7	Q8GVF9.	 Biochemical character	Os07g0639100	LOC_Os07g44560.1				GO:0005524 - ATP binding, GO:0016874 - ligase activity		
15674	ACS9	OsACS9, 4CL4, OsACOS12, ACOS12	ACYL-COA SYNTHETASE 9	acyl-CoA synthetase 9, 4-hydroxycinnamate CoA ligase 4, fatty acyl-CoA synthetase 12	ACYL-COA SYNTHETASE 9	osacos12	4	Q7XXL2. OsACOS12 in Li et al. 2016, Yang et al. 2017, Chen et al. 2019, Peng et al. 2019, Han et al. 2023. an orthologue of Arabidopsis ACOS5 (acyl-CoA synthetase5).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0310800	LOC_Os04g24530.2, LOC_Os04g24530.1				GO:0012501 - programmed cell death, GO:0005524 - ATP binding, GO:0016874 - ligase activity, GO:0009807 - lignan biosynthetic process, GO:0080110 - sporopollenin biosynthetic process, GO:0009555 - pollen development, GO:0010208 - pollen wall assembly, GO:0048653 - anther development, GO:0010584 - pollen exine formation	TO:0000733 - lignin biosynthesis trait, TO:0000437 - male sterility, TO:0000731 - lignin content, TO:0000602 - total fat content	PO:0025313 - tapetum , PO:0001007 - pollen development stage , PO:0020048 - microspore , PO:0001004 - anther development stage 
15675	_	OsOTU1	_	OUT like cysteine protease 1			2	an OsHIR1-interacting protein.		Os02g0168600	LOC_Os02g07210.1, LOC_Os02g07210.2, LOC_Os02g07210.3, LOC_Os02g07210.4						
15677	HAIKU2	OsHAIKU2, OsRLK7, RLK7, OsMEG1, MEG1	RECEPTOR-LIKE PROTEIN KINASE HAIKU2	receptor-like protein kinase HAIKU2, receptor- like kinase 7, maternally expressed gene 1	RECEPTOR-LIKE PROTEIN KINASE HAIKU2	meg1-1, meg1-2, OsRLK7-1, ko-rlk, ko-rlk321, ko-rlk322	12	OR472548. an OsHIR1-interacting protein.  a rice ortholog of Arabidopsis IKU2. GO:1900366: negative regulation of defense response to insect. 	 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Tolerance and resistance - Insect resistance	Os12g0632800	LOC_Os12g43640.1				GO:0040008 - regulation of growth, GO:0002213 - defense response to insect, GO:0080027 - response to herbivore, GO:0009845 - seed germination, GO:0070825 - micropyle, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0006979 - response to oxidative stress, GO:0052323 - negative regulation of phytoalexin biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0009960 - endosperm development, GO:0046777 - protein amino acid autophosphorylation, GO:0016021 - integral to membrane, GO:0009611 - response to wounding	TO:0000357 - growth and development trait, TO:0000424 - brown planthopper resistance, TO:0000205 - white-backed planthopper resistance, TO:0002668 - jasmonic acid content, TO:0000078 - root dry weight, TO:0000674 - phytochemical compound content, TO:0000396 - grain yield, TO:0000152 - panicle number, TO:0002667 - abscisic acid content, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000440 - grain number per plant, TO:0000552 - shoot dry weight, TO:0000261 - insect damage resistance, TO:0000457 - total biomass yield	
15678	_	OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2, OsPAL1	_	Phenylalanine ammonia-lyase 02			4	AY224546. OsPAL5 in Tonnessen et al. 2014, Zhou et al. 2018, Xu et al. 2018, Sathe et al. 2019, He et al. 2020, Wang et al. 2022, Liu et al. 2024.  OsPAL1 in Dangol et al. 2021, Nguyen et al. 2022.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0518100	LOC_Os04g43760.1, LOC_Os04g43760.2				GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0002213 - defense response to insect, GO:0010224 - response to UV-B, GO:0042742 - defense response to bacterium, GO:0009699 - phenylpropanoid biosynthetic process, GO:0051851 - modification by host of symbiont morphology or physiology, GO:0006559 - L-phenylalanine catabolic process, GO:0009800 - cinnamic acid biosynthetic process, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance, TO:0000179 - biotic stress trait, TO:0000601 - UV-B light sensitivity, TO:0000074 - blast disease, TO:0000424 - brown planthopper resistance	
15679	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM	_	Phenylalanine ammonia-lyase 03, Tyrosine Aminomutase 1		ostam	12	GO:0080167: response to karrikin. OsPAL9 in Tonnessen et al. 2014, Yang et al. 2022.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0520200	LOC_Os12g33610.1				GO:0046244 - salicylic acid catabolic process, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0006979 - response to oxidative stress, GO:0010224 - response to UV-B, GO:0006559 - L-phenylalanine catabolic process, GO:0009819 - drought recovery, GO:0005737 - cytoplasm, GO:0046274 - lignin catabolic process, GO:0009555 - pollen development, GO:0009800 - cinnamic acid biosynthetic process, GO:0050832 - defense response to fungus, GO:0006571 - tyrosine biosynthetic process	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	
15680	_	OsPAL05, PAL05, OsPAL3, PAL5, PAL3, OsPAL2;3, PAL2;3, OsPAL2-1, PAL2-1	_	Phenylalanine ammonia-lyase 05		pal3, pal3-1, pal3-2	2	OsPAL3 in Tonnessen et al. 2014, Zhou et al. 2018, Chen et al. 2018, Sathe et al. 2019, Wu et al. 2019, Zhou et al. 2021, Yao et al. 2022, Yang et al. 2022, Wang et al. 2022, Liu et al. 2023, Ullah et al. 2023. OsPAL2;3 in Fang et al. 2020. OsPAL2-1 in Li et al. 2020. TO:1000043: root system phosphorus content. TO:0020114: shoot system phosphorus content. GO:0080167: response to karrikin. 	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Biochemical character	Os02g0626600	LOC_Os02g41670.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0042545 - cell wall modification, GO:0010238 - response to proline, GO:0005829 - cytosol, GO:0009697 - salicylic acid biosynthetic process, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0006794 - phosphorus utilization, GO:0050832 - defense response to fungus, GO:0006559 - L-phenylalanine catabolic process, GO:0042594 - response to starvation, GO:0006979 - response to oxidative stress, GO:0009800 - cinnamic acid biosynthetic process, GO:0010229 - inflorescence development, GO:0046394 - carboxylic acid biosynthetic process	TO:0000255 - sheath blight disease resistance, TO:0000034 - chromium sensitivity, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000421 - pollen fertility, TO:0000102 - phosphorus sensitivity, TO:0001024 - phosphorus content	PO:0001083 - inflorescence development stage 
15681	_	OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7	_	Phenylalanine ammonia-lyase 07			4	OsPAL6 in Tonnessen et al. 2014, Zhou et al. 2018, Chen et al. 2018, Ke et al. 2019, Wu et al. 2019, Zhou et al. 2021, He et al. 2020, Sun et al. 2021, Wu et al. 2022, Yang et al. 2022, Wang et al. 2022, Ding et al. 2023, Sun et al. 2024. similar to AtPAL1. PAL1 in Schmitz et al. 2015. GO:1901141: regulation of lignin biosynthetic process. GO:1990169: stress response to copper ion. GO:1990170: stress response to cadmium ion. 	 Coloration - Anthocyanin,  Reproductive organ - panicle,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf	Os04g0518400	LOC_Os04g43800.1				GO:0002213 - defense response to insect, GO:0009800 - cinnamic acid biosynthetic process, GO:0009718 - anthocyanin biosynthetic process, GO:0050832 - defense response to fungus, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0006952 - defense response, GO:0009697 - salicylic acid biosynthetic process, GO:0010229 - inflorescence development, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0006559 - L-phenylalanine catabolic process, GO:0009620 - response to fungus, GO:0009809 - lignin biosynthetic process, GO:0005737 - cytoplasm, GO:0045548 - phenylalanine ammonia-lyase activity	TO:0000424 - brown planthopper resistance, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000605 - hydrogen peroxide content, TO:0000255 - sheath blight disease resistance, TO:0000021 - copper sensitivity, TO:0000074 - blast disease, TO:0000421 - pollen fertility, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0020104 - leaf sheath , PO:0009047 - stem 
15682	_	RA5B, OsEnS-99	_	rice allergen 5B, endosperm-specific gene 99	_		7	D42141. LOC_Os07g11410.		Os07g0214600	LOC_Os07g11410.1				GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity		
15684	_	RA16, OsEnS-100	_	rice allergen 16, endosperm-specific gene 100	_		7	D42142. Q01881. LOC_Os07g11510.		Os07g0215500	LOC_Os07g11510.1				GO:0010951 - negative regulation of endopeptidase activity, GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity		
15685	_	RIM2	_	RIM2 protein				AF121139. similar to En/Spm transposon protein.									
15686	17S rRNA	17S rRNA	17S rRNA	17S RIBOSOMAL RNA			2	M35382.									
15687	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA			2	M35385.									
15688	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA			2	M35386.									
15689	EIF1A1	OseIF1A-1	EUKARYOTIC INITIATION FACTOR 1A-1	translation initiation factor 1A-1, eukaryotic initiation factor 1A-1	EUKARYOTIC INITIATION FACTOR 1A-1		2	AJ563657.	 Biochemical character	Os02g0300700	LOC_Os02g19770.1				GO:0003743 - translation initiation factor activity		
15690	EIF1A2	OseIF1A-2	EUKARYOTIC INITIATION FACTOR 1A-2	translation initiation factor 1A-2, eukaryotic initiation factor 1A-2, initiation factor eIF-4C	EUKARYOTIC INITIATION FACTOR 1A-1		6	AJ563658. D50570. initiation factor eIF-4C in Hihara et al. 1997.	 Biochemical character	Os06g0342200	LOC_Os06g23440.1				GO:0003743 - translation initiation factor activity, GO:0005829 - cytosol		
15691	_	mEF-G	_	mitochondrial elongation factor G			3	AB040051, AB040052. Q9FE64.		Os03g0565500	LOC_Os03g36780.1				GO:0046686 - response to cadmium ion, GO:0005524 - ATP binding, GO:0003924 - GTPase activity, GO:0003746 - translation elongation factor activity, GO:0005525 - GTP binding, GO:0005739 - mitochondrion		
15692	_		_	Alpha-amylase	ALPHA-AMYLASE 3E			M62916.	 Biochemical character								
15693	EFTU	tufA, EF-Tu	ELONGATION FACTOR TU	chloroplast elongation factor EF-Tu, elongation factor Tu	ELONGATION FACTOR 1 GAMMA 2		2	AF145053. D23470.	 Biochemical character	Os02g0595700	LOC_Os02g38210.1				GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0005622 - intracellular, GO:0003746 - translation elongation factor activity		
15694	FLO16	CMDH, OscMDH, cMDH, OsMDH, MDH, OsFLO16, OsMDH10.1, MDH10.1, OsLdh11, Ldh11	FLOURY ENDOSPERM16	cytoplasmic malate dehydrogenase, malate dehydrogenase, NAD-dependent cytosolic malate dehydrogenase, Lactate Dehydrogenase 11	CYTOPLASMIC MALATE DEHYDROGENASE	flo16	10	AF353203. Q7XDC8. BGIOSGA033135. PO:0030123: panicle inflorescence. GO:0097009: energy homeostasis.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Seed - Morphological traits - Endosperm,  Biochemical character	Os10g0478200	LOC_Os10g33800.3, LOC_Os10g33800.1, LOC_Os10g33800.2				GO:0010043 - response to zinc ion, GO:0005737 - cytoplasm, GO:0051775 - response to redox state, GO:0048046 - apoplast, GO:0034059 - response to anoxia, GO:0005634 - nucleus, GO:0009570 - chloroplast stroma, GO:0006108 - malate metabolic process, GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0044262 - cellular carbohydrate metabolic process, GO:0030060 - L-malate dehydrogenase activity, GO:0009408 - response to heat, GO:0019252 - starch biosynthetic process, GO:0048316 - seed development, GO:0042592 - homeostatic process, GO:0009960 - endosperm development, GO:0009506 - plasmodesma, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0006950 - response to stress, GO:0001666 - response to hypoxia, GO:0005783 - endoplasmic reticulum, GO:0005774 - vacuolar membrane, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0006099 - tricarboxylic acid cycle	TO:0000598 - protein content, TO:0006001 - salt tolerance, TO:0000328 - sucrose content, TO:0000602 - total fat content, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000168 - abiotic stress trait, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000015 - oxygen sensitivity, TO:0000592 - 1000-dehulled grain weight, TO:0000259 - heat tolerance, TO:0000399 - grain thickness, TO:0000590 - grain weight, TO:0000196 - amylose content, TO:0000696 - starch content, TO:0000104 - floury endosperm, TO:0000100 - shrunken endosperm	PO:0025034 - leaf , PO:0009047 - stem , PO:0009066 - anther , PO:0009030 - carpel , PO:0009005 - root , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0009029 - stamen , PO:0000025 - root tip , PO:0020104 - leaf sheath , PO:0007633 - endosperm development stage , PO:0020103 - flag leaf , PO:0005052 - plant callus , PO:0001170 - seed development stage 
15695	PPC2A	Osppc, OSPPC, Osppc2a, ppc2a	PHOSPHOENOLPYRUVATE CARBOXYLASE 2A	phosphoenolpyruvate carboxylase, phosphoenolpyruvate carboxylase 2a, PEPCase 2a	PHOSPHOENOLPYRUVATE CARBOXYLASE 2A		8	AY187619. Osppc2a in Masumoto et al. 2010 and Yamamoto et al. 2014. cytosolic isozyme. C3-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase.	 Biochemical character	Os08g0366000	LOC_Os08g27840.1, LOC_Os08g27840.2				GO:0006099 - tricarboxylic acid cycle, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0008964 - phosphoenolpyruvate carboxylase activity		
15696	_		_	carbonic anhydrase3					 Biochemical character						GO:0015977 - carbon utilization by fixation of carbon dioxide		
15698	BIHD1	OsBIHD1	BTH-INDUCED HOMEODOMAIN PROTEIN 1	BTH-induced homeodomain protein 1, BLH6-like 1, BEL1-LIKE HOMEODOMAIN6-like 1	BTH-INDUCED HOMEODOMAIN PROTEIN 1	osbihd1	3	a BELL homeodomain transcription factor. AY524972. a protein similar to AtBLH6 (BEL1-LIKE HOMEODOMAIN6). GO:1900457: regulation of brassinosteroid mediated signaling pathway. TO:0000789: bud anatomy and morphology trait.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os03g0680800	LOC_Os03g47740.1, LOC_Os03g47740.2, LOC_Os03g47740.3				GO:0009742 - brassinosteroid mediated signaling, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0006979 - response to oxidative stress, GO:0005634 - nucleus, GO:0002229 - defense response to oomycetes, GO:0009755 - hormone-mediated signaling, GO:0009873 - ethylene mediated signaling pathway, GO:0051607 - defense response to virus, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009741 - response to brassinosteroid stimulus	TO:0000112 - disease resistance, TO:0000429 - salt sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000043 - root anatomy and morphology trait, TO:0002677 - brassinosteroid sensitivity, TO:0000148 - viral disease resistance, TO:0000420 - fertility related trait, TO:0000074 - blast disease, TO:0000207 - plant height	
15699	SEC14-4	OsSec14-4, Sec14-4	SEC14 PROTEIN 4 	sec14 like protein, SEC14 domain protein 4, Sec14 protein 4	SEC14 PROTEIN 4 		1	U88068. PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0926800	LOC_Os01g70210.1				GO:0005794 - Golgi apparatus, GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
15700	JAB1	Osjab1, jab1, OsJAB1, CSN5, OsCSN5, OsCSN5A CSN5A	JUN-ACTIVATION-DOMAIN- BINDING PROTEIN 1	JAB1 Transcriptional Coactivator, COP9 signalosome subunit 5, COP9 signalosome complex subunit 5a, JUN-activation-domain- binding protein 1	JUN-ACTIVATION-DOMAIN- BINDING PROTEIN 1		4	A Rice Homolog of the Human JAB1 Transcriptional Coactivator. Arabidopsis CSN5 homologous protein. AF072849. GO:2000082: regulation of L-ascorbic acid biosynthetic process. GO:1901001: negative regulation of response to salt stress. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0654700	LOC_Os04g56070.2, LOC_Os04g56070.1				GO:0009651 - response to salt stress, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0010093 - specification of floral organ identity, GO:0045732 - positive regulation of protein catabolic process, GO:0031347 - regulation of defense response, GO:0051607 - defense response to virus, GO:0005737 - cytoplasm, GO:0010971 - positive regulation of G2/M transition of mitotic cell cycle, GO:0010388 - cullin deneddylation, GO:0010387 - signalosome assembly, GO:0008180 - signalosome, GO:0000338 - protein deneddylation, GO:0010100 - negative regulation of photomorphogenesis, GO:0019784 - NEDD8-specific protease activity, GO:0008237 - metallopeptidase activity, GO:0009416 - response to light stimulus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance, TO:0000020 - black streak dwarf virus resistance, TO:0000075 - light sensitivity	PO:0020148 - shoot apical meristem , PO:0025034 - leaf 
15704	GER4	OsGER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1, OsCDP1.2, CDP1.2	GERMIN-LIKE PROTEIN 4	germin-like protein 4, german-like protein 1-2, cupin domain protein 1.2	GERMIN-LIKE PROTEIN 4		1	AF032974. Q7F731. OsGLP1-1 in Das et al. 2019.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0284500	LOC_Os01g18170.1				GO:0009409 - response to cold, GO:0030145 - manganese ion binding, GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000315 - bacterial disease resistance, TO:0000259 - heat tolerance, TO:0000439 - fungal disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
15706	GER7	OsGER7, OsGLP3-7, GLP3-7, OsCDP3.11, CDP3.11	GERMIN-LIKE PROTEIN 7	germin-like protein 7, german-like protein 3-7, cupin domain protein 3.11	GERMIN-LIKE PROTEIN 7		3	AF072694. Q10BU2.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0804500	LOC_Os03g58980.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0045735 - nutrient reservoir activity, GO:0048046 - apoplast, GO:0030145 - manganese ion binding	TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
15707	_	GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3	_	germin-like protein 8, german-like protein 1-4			1	AF072695. Q942A8. GO:2000280: regulation of root development. OsGLP1-3 in Das et al. 2019.		Os01g0952000	LOC_Os01g72290.2, LOC_Os01g72290.1				GO:0045735 - nutrient reservoir activity, GO:0030145 - manganese ion binding, GO:0009506 - plasmodesma, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0009505 - plant-type cell wall, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0048046 - apoplast		
15709	18S rRNA	18S  rRNA	18S rRNA	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA				M26461.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
15710	RPS21	rps21	RIBOSOMAL PROTEIN S21	ribosomal protein small subunit 21, r-protein S21, ribosomal protein S21, Ribosomal protein YS25	RIBOSOMAL PROTEIN S20		3	D12633. D10969 (partial cds). P35687.	 Other	Os03g0345200	LOC_Os03g22460.1, LOC_Os03g22460.2				GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0006414 - translational elongation, GO:0003735 - structural constituent of ribosome, GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0042274 - ribosomal small subunit biogenesis, GO:0022627 - cytosolic small ribosomal subunit		
15711	RPL7A	OsRPL7A	RIBOSOMAL PROTEIN L7A	ribosomal protein L7A, r-protein L7A	RIBOSOMAL PROTEIN L7A		8	D12631. P35685.		Os08g0326400	LOC_Os08g23710.1				GO:0042254 - ribosome biogenesis, GO:0022625 - cytosolic large ribosomal subunit, GO:0005774 - vacuolar membrane		
15712	MGD2	OsMGD, MGD, OsMGD2, OsMGDG3, MGDG3	MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2	Monogalactosyldiacylglycerol synthase, MGDG synthase, MGDG synthase 2	MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2	osmgd2, osmgd2- 1, osmgd2-2	2	AB112060 (indica). Q0DWQ1. OsMGDG3 in Zhang et al. 2023.TO:0001069: cooking quality trait.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Vegetative organ - Culm,  Biochemical character,  Reproductive organ - panicle,  Coloration - Chlorophyll	Os02g0802700	LOC_Os02g55910.2, LOC_Os02g55910.1				GO:0009247 - glycolipid biosynthetic process, GO:0042594 - response to starvation, GO:0009416 - response to light stimulus, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0009535 - chloroplast thylakoid membrane, GO:0009908 - flower development, GO:0009651 - response to salt stress, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0030912 - response to deep water, GO:0006794 - phosphorus utilization, GO:0046509 - 1,2-diacylglycerol 3-beta-galactosyltransferase activity, GO:0045017 - glycerolipid biosynthetic process, GO:0019374 - galactolipid metabolic process, GO:0009507 - chloroplast, GO:0030246 - carbohydrate binding, GO:0030259 - lipid glycosylation, GO:0006631 - fatty acid metabolic process, GO:0016036 - cellular response to phosphate starvation, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0010044 - response to aluminum ion	TO:0000207 - plant height, TO:0000371 - yield trait, TO:0000622 - flower development trait, TO:0000653 - seed development trait, TO:0000357 - growth and development trait, TO:0000293 - chlorophyll-a content, TO:0000316 - photosynthetic ability, TO:0000286 - submergence sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000592 - 1000-dehulled grain weight, TO:0005001 - linoleic acid content, TO:0000162 - seed quality, TO:0000102 - phosphorus sensitivity, TO:0000604 - fat and essential oil content, TO:0000627 - relative phosphorus utilization efficiency	PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0009089 - endosperm , PO:0009066 - anther , PO:0007615 - flower development stage , PO:0009010 - seed 
15713	_	HSP70, hsp70, OsHSP70, OsMed37_8, Med37_8	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD, heat-shock protein cognate 70, Mediator 37_8			11	X67711. D22613. D15987.	 Tolerance and resistance - Stress tolerance	Os11g0703900	LOC_Os11g47760.6, LOC_Os11g47760.5, LOC_Os11g47760.4, LOC_Os11g47760.3, LOC_Os11g47760.1, LOC_Os11g47760.2				GO:0009941 - chloroplast envelope, GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0046686 - response to cadmium ion, GO:0005524 - ATP binding	TO:0000259 - heat tolerance	
15714	_	mago, OsMAGO2, MAGO2	_	mago nashi, Mago protein, Mago nashi protein, rice mago nashi homolog, MAGO NASHI 2			12	AF338343. D40597. KF051008. P49030. exon junction complex (EJC) core subunit. OsMAGO2 in Gong et al. 2014.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os12g0287200	LOC_Os12g18880.1				GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0009908 - flower development	TO:0000215 - stamen anatomy and morphology trait, TO:0000622 - flower development trait, TO:0000164 - stress trait	
15715	EEF1B2	eEF-1beta2, EF-1beta2	EUKARYOTIC ELONGATION FACTOR 1-BETA2	elongation factor 1 beta2, translation elongation factor-1Beta subunit isoform 2	EUKARYOTIC ELONGATION FACTOR 1-BETA		3	D83726, D83727. Q40682.	 Biochemical character	Os03g0406200	LOC_Os03g29260.2	GR:0061372			GO:0005853 - eukaryotic translation elongation factor 1 complex, GO:0003746 - translation elongation factor activity		
15716	_	H2A	_	Histone H2A				M35379 (5' end).									
15717	_	H2B	_	Histone H2B													
15718	_	H4	_	Histone H4													
15719	_	H2B	_	Histone H2B			3	D10396.									
15720	_	H3	_	Histone H3				D10965.									
15721	_	H4, OsH4	_	Histone H4			10	D10397. D15083.		Os10g0539500	LOC_Os10g39410.1				GO:0003677 - DNA binding, GO:0000786 - nucleosome, GO:0009579 - thylakoid, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0009414 - response to water deprivation, GO:0006334 - nucleosome assembly, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005774 - vacuolar membrane, GO:0005730 - nucleolus		
15722	_		_	U2 small nuclear RNA-associated B antigen				D10958.							GO:0009579 - thylakoid, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0005774 - vacuolar membrane, GO:0005730 - nucleolus, GO:0009414 - response to water deprivation, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0003677 - DNA binding		
15723	EIF4D	eIF-4d, EIF4D, elF-4D, OseIF5A-2, eIF5A-2, EIF5A2	EUKARYOTIC INITIATION FACTOR 4D	eukaryotic initiation factor 4D, initiation factor eIF-4D	EUKARYOTIC INITIATION FACTOR 4D		12	D10399 (partial cds). OseIF5A-2 in Chou et al. 2004. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os12g0507200	LOC_Os12g32240.1				GO:0008612 - peptidyl-lysine modification to hypusine, GO:0048366 - leaf development, GO:0042594 - response to starvation, GO:0045905 - positive regulation of translational termination, GO:0045901 - positive regulation of translational elongation, GO:0006452 - translational frameshifting, GO:0043022 - ribosome binding, GO:0009743 - response to carbohydrate stimulus, GO:0009651 - response to salt stress, GO:0010038 - response to metal ion, GO:0003746 - translation elongation factor activity, GO:0003743 - translation initiation factor activity	TO:0000357 - growth and development trait, TO:0006001 - salt tolerance, TO:0000480 - nutrient sensitivity, TO:0000655 - leaf development trait	PO:0001050 - leaf development stage , PO:0025034 - leaf , PO:0009049 - inflorescence 
15724	_		_	Eukatyotic release factor			12	D10401 (partial cds). 		Os12g0540900	LOC_Os12g35570.1, LOC_Os12g35570.2, LOC_Os12g35570.3				GO:0006436 - tryptophanyl-tRNA aminoacylation, GO:0005737 - cytoplasm, GO:0004830 - tryptophan-tRNA ligase activity, GO:0005524 - ATP binding		
15725	_		_	ribosomal protein 117			2	D10404 (partial cds).		Os02g0814700	LOC_Os02g56960.1				GO:0005730 - nucleolus, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
15726	_		_	Ribosomal protein S12				D10405 (partial cds).									
15727	_		_	Ribosomal protein L41				D10406 (partial cds).									
15728	RPL35	OsRPL35	RIBOSOMAL PROTEIN L35	ribosomal protein L35, r-protein L35	RIBOSOMAL PROTEIN L35		2	D10407 (partial cds). 		Os02g0503400	LOC_Os02g30050.1				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
15729	_	osppdka, ppdka	_	Pyruvate orthophosphate dikinase, cytosolic Pyruvate orthophosphate dikinase, cytosolic PPDK			3	D10416. Q75KR1. AJ004965.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0432100	LOC_Os03g31750.1, LOC_Os03g31750.2, LOC_Os03g31750.3				GO:0006090 - pyruvate metabolic process, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0001666 - response to hypoxia, GO:0046872 - metal ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0050242 - pyruvate, phosphate dikinase activity, GO:0016301 - kinase activity	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000286 - submergence sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity	
15730	ACP		ACYL CARRIER PROTEIN	Acyl carrier protein, acyl carrier protein 3	ACYL CARRIER PROTEIN		8	D10420. D15925. acyl carrier protein 3 in Sasaki et al. 1994.	 Biochemical character	Os08g0549300	LOC_Os08g43580.1, LOC_Os08g43580.2				GO:0009570 - chloroplast stroma, GO:0006633 - fatty acid biosynthetic process		
15731	_		_	cytochrome b5				D10954.	 Biochemical character						GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0020037 - heme binding, GO:0009535 - chloroplast thylakoid membrane		
15732	_		_	F1-ATPase				D10422.	 Biochemical character								
15733	_		_	Aspartate aminotransferase				D10968.	 Biochemical character								
15734	_		_	Cysteine synthetase				D10957.	 Biochemical character								
15735	_		_	Cathepsin L				D10960.									
15736	_		_	S-adenosylmethionine synthetase				D10433 (partial cds).									
15737	_		_	Xenopus maternal G10 homolog, XELG10 homolog				D10437.									
15738	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb, TPH	_	21 kDa polypeptide, translationally controlled tumor protein, TCTP homolog, Tumor protein homolog			11	D10966. P35681. GO:0090333: regulation of stomatal closure. GO:0090406: pollen tube. a homolog of TCTPs (human, Drosophila and yeast).  the most stable reference genes under aerobic and anaerobic conditions (Phule et al. 2018).	 Tolerance and resistance - Stress tolerance	Os11g0660500	LOC_Os11g43900.2, LOC_Os11g43900.1				GO:0005829 - cytosol, GO:0010252 - auxin homeostasis, GO:0008283 - cell proliferation, GO:0042742 - defense response to bacterium, GO:0009819 - drought recovery, GO:0009790 - embryonic development, GO:0007346 - regulation of mitotic cell cycle, GO:0048768 - root hair cell tip growth, GO:0040014 - regulation of multicellular organism growth, GO:0048046 - apoplast, GO:0046686 - response to cadmium ion, GO:0005794 - Golgi apparatus, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0033194 - response to hydroperoxide, GO:0009737 - response to abscisic acid stimulus, GO:0046689 - response to mercury ion, GO:0005774 - vacuolar membrane, GO:0009579 - thylakoid, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0048527 - lateral root development, GO:0009860 - pollen tube growth, GO:0031117 - positive regulation of microtubule depolymerization, GO:0001558 - regulation of cell growth	TO:0000615 - abscisic acid sensitivity, TO:0000482 - chemical stress sensitivity, TO:0000605 - hydrogen peroxide content	
15739	GATA18 	OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b	GATA TRANSCRIPTION FACTOR 18	TIFY GENE 1A, TIFY-DOMAIN PROTEIN 1A, CCT domain-containing gene 13, CCT (CO, CO-LIKE and TOC1) domain protein 13, CCT domain protein 13, GATA transcription factor 18, GATA factor 18	GATA TRANSCRIPTION FACTOR 18		3	LOC_Os03g47970.1 (OsGATA18a), LOC_Os03g47970.2 (OsGATA18b). Q10F25. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other,  Tolerance and resistance - Stress tolerance	Os03g0684000	LOC_Os03g47970.1, LOC_Os03g47970.2				GO:0007623 - circadian rhythm, GO:0006366 - transcription from RNA polymerase II promoter, GO:0009651 - response to salt stress, GO:0005667 - transcription factor complex, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0003682 - chromatin binding, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
15740	GATA19	OsTIFY1b, TIFY1B, OsCCT15, CCT15, OsGATA19, OsGATA19a, OsGATA19b	GATA TRANSCRIPTION FACTOR 19	TIFY GENE 1B, TIFY-DOMAIN PROTEIN 1B, CCT domain-containing gene 15, CCT (CO, CO-LIKE and TOC1) domain protein 15, CCT domain protein 15, GATA transcription factor 19, GATA factor 19	GATA TRANSCRIPTION FACTOR 19		3	LOC_Os03g52450.1 (OsGATA19a), LOC_Os03g52450.2 (OsGATA19b). Q0DNU1. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other,  Tolerance and resistance - Stress tolerance	Os03g0734900	LOC_Os03g52450.1, LOC_Os03g52450.2				GO:0008270 - zinc ion binding, GO:0007623 - circadian rhythm, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0009414 - response to water deprivation, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0003682 - chromatin binding, GO:0009737 - response to abscisic acid stimulus, GO:0006366 - transcription from RNA polymerase II promoter, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
15741	GATA17	OsTIFY2a, TIFY2a, OsCCT04, OsCCT4, CCT04, CCT4, OsGATA17, OsGATA17a, OsGATA17b	GATA TRANSCRIPTION FACTOR 17	TIFY GENE 2A, TIFY-DOMAIN PROTEIN 2A, CCT domain-containing gene 4, CCT (CO, CO-LIKE and TOC1) domain protein 4, CCT domain protein 4, GATA transcription factor 17, GATA factor 17	GATA TRANSCRIPTION FACTOR 17		2	LOC_Os02g05510.1 (OsGATA17a) , LOC_Os02g05510.3 (OsGATA17b). Q6Z433. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0148500	LOC_Os02g05510.1, LOC_Os02g05510.3				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0007623 - circadian rhythm, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
15742	GATA20	OsTIFY2b, TIFY2B, OsCCT24, CCT24, OsGATA20	GATA TRANSCRIPTION FACTOR 20	TIFY GENE 2B, TIFY-DOMAIN PROTEIN 2B, CCT domain-containing gene 24, CCT (CO, CO-LIKE and TOC1) domain protein 24, CCT domain protein 24, GATA transcription factor 20, GATA factor 20	GATA TRANSCRIPTION FACTOR 20		6	Q0DNU1. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os06g0698900	LOC_Os06g48534.1				GO:0030154 - cell differentiation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0007623 - circadian rhythm, GO:0003682 - chromatin binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
15743	RIM2-228	Rim2-228	TRANSPOSON CACTG ELEMENT RIM2-228	transposon CACTG element Rim2-228				AY090462.	 Other						GO:0032196 - transposition		
15744	RIM2-248	Rim2-248	TRANSPOSON CACTG ELEMENT RIM2-248	transposon CACTG element Rim2-248				AY090463.	 Other						GO:0032196 - transposition		
15745	RIM2-553	Rim2-553	TRANSPOSON CACTG ELEMENT RIM2-553	transposon CACTG element Rim2-553				AY090464.	 Other						GO:0032196 - transposition		
15746	_		_	RIM2 protein				AY090462. a TNP2/TNPD-like protein. a RIM2 protein in Rim2-228.									
15747	_		_	RIM2 protein				AY090463. a TNP2/TNPD-like protein. a RIM2 protein in Rim2-248.									
15748	_		_	RIM2 protein				AY090464. a TNP2/TNPD-like protein. a RIM2 protein in Rim2-553. putative transposase.									
15749	_	HRGP	_	hydroxyproline-rich glycoprotein				AU090537. HRGP is encoded by Gene 2 of Rim2 elements (Rim2-228, Rim2-248 and Rim2-553). 									
15750	_	OsBLE1	_	BLE1 protein, BL-enhanced gene 1			5	AB072977.		Os05g0122900	LOC_Os05g03150.1				GO:0009741 - response to brassinosteroid stimulus, GO:0005747 - mitochondrial respiratory chain complex I	TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height	
15751	_		_	23 kDa polypeptide of photosystem II, 23 kDa protein of the oxygen-evolving complex of photosystem II, 23 kDa polypeptide of PSII				D49713.							GO:0015979 - photosynthesis, GO:0005509 - calcium ion binding, GO:0009654 - oxygen evolving complex, GO:0019898 - extrinsic to membrane	TO:0000075 - light sensitivity	
15752	_		_	precursor ferredoxin-NADP+ oxidoreductase, ferredoxin-NADP+ oxidoreductase			7	D87547. O23877.	 Biochemical character	Os07g0147900	LOC_Os07g05400.1				GO:0009507 - chloroplast, GO:0015979 - photosynthesis, GO:0004324 - ferredoxin-NADP+ reductase activity, GO:0005507 - copper ion binding		
15753	_	ARF, ARF1, OsARFA1b, ARFA1b	_	ADP-ribosylation factor, ADP-ribosylation factor 1, ADP-ribosylation factor A1b			5	D17760. BF889436. P51823. One of the two copies of the ARF gene in rice genome. OsARFA1b in Muthamilarasan et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0489600	LOC_Os05g41060.1				GO:0006471 - protein amino acid ADP-ribosylation, GO:0006886 - intracellular protein transport, GO:0009409 - response to cold, GO:0009269 - response to desiccation, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0016192 - vesicle-mediated transport, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005794 - Golgi apparatus	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
15754	JAC1	OsJAC1, DIR54, OsDIR54, OsjDIR54, OsJRL29, JRL29	JACALIN-RELATED LECTIN 1	jacalin-related lectin 1, Jacalin 1, Dirigent 54, DIR domain protein 54, Jacalin-related lectin 29	JACALIN-RELATED LECTIN 1	Osjac1-1, Osjac1-2	12	DQ243708. a mannose-binding jacalin-related lectin. an ortholog of wheat TaJA1. Jasmonate-induced protein. OsJRL29 in Zhang et al. 2021.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0247700	LOC_Os12g14440.1				GO:0046688 - response to copper ion, GO:0050832 - defense response to fungus, GO:0030246 - carbohydrate binding, GO:0006952 - defense response, GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0009826 - unidimensional cell growth, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0010212 - response to ionizing radiation, GO:0010332 - response to gamma radiation	TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity, TO:0000357 - growth and development trait, TO:0000175 - bacterial blight disease resistance, TO:0001007 - coleoptile length, TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000161 - radiation response trait, TO:0000207 - plant height, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity	
15755	MDH12.1	OsMDH12.1, OsLdh12, Ldh12	MALATE DEHYDROGENASE 12.1	Glyoxysomal Malate Dehydrogenase, lactate/malate dehydrogenase 1, Lactate Dehydrogenase 12	MALATE DEHYDROGENASE 12.1		12	D85763. Q42972.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0632700	LOC_Os12g43630.1, LOC_Os12g43630.2, LOC_Os12g43630.3				GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0001666 - response to hypoxia, GO:0009739 - response to gibberellin stimulus, GO:0006099 - tricarboxylic acid cycle, GO:0006097 - glyoxylate cycle, GO:0034059 - response to anoxia, GO:0009413 - response to flooding, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0009514 - glyoxysome, GO:0046685 - response to arsenic, GO:0006108 - malate metabolic process, GO:0030060 - L-malate dehydrogenase activity, GO:0031998 - regulation of fatty acid beta-oxidation, GO:0080093 - regulation of photorespiration, GO:0009635 - response to herbicide, GO:0005737 - cytoplasm	TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity, TO:0000058 - herbicide sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000429 - salt sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009009 - plant embryo , PO:0000025 - root tip 
15756	LDH	OsLDH, OsMDH2.1, MDH2.1, OsLdh3, Ldh3	LACTATE DEHYDROGENASE	lactate dehydrogenase, Malate dehydrogenase 2.1, Lactate Dehydrogenase 3	LACTATE DEHYDROGENASE		2	D13817. OsLdh3 in Chatterjee et al. 2023. PO:0030123: panicle inflorescence. GO:0097501: stress response to metal ion. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0105400	LOC_Os02g01510.1				GO:0046685 - response to arsenic, GO:0001666 - response to hypoxia, GO:0005783 - endoplasmic reticulum, GO:0009651 - response to salt stress, GO:0004459 - L-lactate dehydrogenase activity, GO:0005737 - cytoplasm, GO:0006096 - glycolysis, GO:0044262 - cellular carbohydrate metabolic process, GO:0009409 - response to cold, GO:0010038 - response to metal ion, GO:0009735 - response to cytokinin stimulus, GO:0034059 - response to anoxia, GO:0009413 - response to flooding, GO:0046686 - response to cadmium ion	TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance, TO:0000167 - cytokinin sensitivity, TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance	PO:0000025 - root tip , PO:0009049 - inflorescence , PO:0009005 - root , PO:0005052 - plant callus 
15757	_	GPAT, OsGPAT	_	glycerol-3-phosphate acyltransferase, plastidial GPAT			10	LOC_Os10g42720. AF155815. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os10g0577900	LOC_Os10g42720.1				GO:0004366 - glycerol-3-phosphate O-acyltransferase activity, GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0009570 - chloroplast stroma, GO:0009536 - plastid, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0016746 - transferase activity, transferring acyl groups		
15758	_	OsRING-1, OsRING341, RING341	_	RING-type E3 ubiquitin ligase 341			2	a blast-inducible RING-H2 type zinc finger protein. AY579411.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0759400 	LOC_Os02g52210.1, LOC_Os02g52210.2				GO:0008270 - zinc ion binding	TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000058 - herbicide sensitivity	
15759	HEMA	HEMA1, OsHEMA, GluTR, OsHEMA1, hemA	GLUTAMYL-TRNA REDUCTASE	glutamyl-tRNA reductase, Glutamyl-tRNA reductase 2	GLUTAMYL-TRNA REDUCTASE		10	AB011416. A2Z928. P0C587. Glutamyl-tRNA reductase 2 in Jia et al. 2020. osa-miR2926 target gene.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0502400	LOC_Os10g35840.1				GO:0015995 - chlorophyll biosynthetic process, GO:0010114 - response to red light, GO:0050661 - NADP or NADPH binding, GO:0009507 - chloroplast, GO:0008883 - glutamyl-tRNA reductase activity, GO:0009637 - response to blue light, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0046686 - response to cadmium ion, GO:0006979 - response to oxidative stress, GO:0051707 - response to other organism	TO:0000159 - blue light sensitivity, TO:0000158 - red light sensitivity	
15760	_	RH3.2A	_	Histone H3.2A, H3.2-type H3 protein A			4	AY525328. Q0JCT1.	 Tolerance and resistance - Stress tolerance	Os04g0450800					GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
15761	_	OsH3	_	histone H3			3	AF109910 (Oryza coarctata), Q71U98. Q0JCT1 (Oryza sativa japonica). D29713.		Os03g0390600	LOC_Os03g27310.1, LOC_Os03g27310.2				GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding		
15762	SPL43	TBP1, TBPOs-1, OsTBP1, OsRpt5a, Rpt5a, OsRPT5A, OsSPL43	SPOTTED LEAF 43	rice homolog of HIV-1 Tat binding protein-1, homolog of human TBP-1, 19S regulatory particle ATPase subunit 5a, RP triple A-ATPase 5a	TAT BINDING PROTEIN-1	spl43, rpt5a	2	D17788. P46465. AU075370, C25970. AB037155. a 19S regulatory particle subunit from the rice 26S proteasome. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Coloration - Chlorophyll,  Biochemical character	Os02g0803700	LOC_Os02g56000.1, LOC_Os02g56000.2	GR:0061409			GO:0009658 - chloroplast organization, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009553 - embryo sac development, GO:0009555 - pollen development, GO:0010255 - glucose mediated signaling, GO:0005524 - ATP binding, GO:0017111 - nucleoside-triphosphatase activity, GO:0000502 - proteasome complex, GO:0005737 - cytoplasm, GO:0010498 - proteasomal protein catabolic process, GO:0042742 - defense response to bacterium	TO:0000316 - photosynthetic ability, TO:0000325 - soluble protein content, TO:0000293 - chlorophyll-a content, TO:0000040 - panicle length, TO:0000496 - carotenoid content, TO:0000605 - hydrogen peroxide content, TO:0000652 - leaf necrosis, TO:0000175 - bacterial blight disease resistance, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent	PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
15763	TBP2	TBPOs-2, OsTBP2, OsRpt2a, Rpt2a, OsRPT2a	TAT BINDING PROTEIN-2	rice homolog of human 26S protease subunit 4, rice homolog of human 26S protease S4, 19S regulatory particle ATPase subunit 2a, RP triple A-ATPase 2a	TAT BINDING PROTEIN-2		7	D17789. D23487. P46466. a subunit of the 19S regulatory particle of the 26S proteasome. GO:0060968: regulation of gene silencing. GO:0090351: seedling development.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0691800	LOC_Os07g49150.1	GR:0061405			GO:0005524 - ATP binding, GO:0007292 - female gamete generation, GO:0017111 - nucleoside-triphosphatase activity, GO:0009408 - response to heat, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0031347 - regulation of defense response, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0043248 - proteasome assembly, GO:0000502 - proteasome complex, GO:0005634 - nucleus, GO:0009965 - leaf morphogenesis, GO:0051788 - response to misfolded protein, GO:0009933 - meristem structural organization, GO:0046686 - response to cadmium ion, GO:0048232 - male gamete generation, GO:0010078 - maintenance of root meristem identity, GO:0035266 - meristem growth, GO:0048829 - root cap development, GO:0010311 - lateral root formation	TO:0000112 - disease resistance	
15764	_	MAO	_	monoamine oxidase					 Tolerance and resistance - Disease resistance,  Biochemical character							TO:0000074 - blast disease, TO:0000075 - light sensitivity	
15765	DYE1	cab, cab-n8, Lhca4, OsLhca4	DELAYED YELLOWING1	chlorophyll a/b binding protein, light-harvesting chlorophyll a/b binding protein, cab gene from Norin 8, delayed yellowing 1, light-harvesting complex subunit a4	dye1, dye1-1, dye1-2		8	AY445626. a subunit of LHCI (light-harvesting complex I). GO:0080167: response to karrikin.	 Coloration - Chlorophyll,  Vegetative organ - Leaf	Os08g0435900	LOC_Os08g33820.1				GO:0016168 - chlorophyll binding, GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0018298 - protein-chromophore linkage, GO:0009416 - response to light stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0016021 - integral to membrane, GO:0009523 - photosystem II, GO:0009534 - chloroplast thylakoid, GO:0009522 - photosystem I, GO:0046872 - metal ion binding, GO:0010287 - plastoglobule, GO:0009941 - chloroplast envelope, GO:0009765 - photosynthesis, light harvesting	TO:0000326 - leaf color, TO:0002664 - leaf yellowing tolerance, TO:0000495 - chlorophyll content	
15766	_	OsTVLP1	_				3	DQ237917. similar to TGF-b receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins.	 Tolerance and resistance - Disease resistance	Os03g0715500	LOC_Os03g50740.1, LOC_Os03g50740.2, LOC_Os03g50740.3				GO:0016192 - vesicle-mediated transport, GO:0006886 - intracellular protein transport, GO:0005083 - small GTPase regulator activity, GO:0009506 - plasmodesma	TO:0000074 - blast disease	
15767	_	U1-70K	_	U1 snRNP 70K, U1-snRNP-specific 70K protein, U1 small nuclear ribonucleoprotein 70K			10	DQ377062, DQ377063, DQ377064.		Os10g0115600	LOC_Os10g02630.1				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding		
15768	TRN3	Tnr3	TRANSPOSON TRN3	transposable element in rice no.3, transposon Tnr3			5	D63711. En/Spm transposable element family.	 Other						GO:0032196 - transposition		
15769	28S rRNA	28S rRNA	28S rRNA	28S ribosomal RNA				M82048, M82049, M82050, M82051, M82052.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
15770	18S rRNA	18S rRNA	18S rRNA	18S ribosomal RNA				M82424, M82425, M82426, M82427, M82428, M82429, M82430.	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
15771	_	PIGF, PIG-F, OsPIG-F	_	phosphatidylinositol-glycan biosynthesis protein class F			3	DQ838016.		Os03g0129000	LOC_Os03g03690.1, LOC_Os03g03690.2, LOC_Os03g03690.3				GO:0016021 - integral to membrane, GO:0006506 - GPI anchor biosynthetic process, GO:0008168 - methyltransferase activity, GO:0005789 - endoplasmic reticulum membrane	TO:0000166 - gibberellic acid sensitivity, TO:0000401 - plant growth hormone sensitivity	
15772	CSN6	OsCSN6	COP9 SIGNALOSOME SUBUNIT 6	Mov34 homolog, COP9 signalosome subunit 6	COP9 SIGNALOSOME SUBUNIT 6		8	AF072848. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os08g0500000	LOC_Os08g39070.1				GO:0000338 - protein deneddylation, GO:0008180 - signalosome	TO:0000495 - chlorophyll content, TO:0000224 - iron sensitivity, TO:0000465 - mineral and ion content related trait	
15774	RPS19	rps19	RIBOSOMAL PROTEIN S19	ribosomal protein S19	RIBOSOMAL PROTEIN S19		Pt	AY522329 (isolate 93-11 chloroplast comlete genome), AY522330: Nip222(cultivar Nipponbare), AY522331 (isolate PA64S). M22826. JN861109, JN861110: AER12859 (Indica Group chloroplast genome). GU592207: ADD62863 (Japonica chloroplast comlete genome). AP006728 (Oryza nivara chloroplast genome).	 Other						GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0015935 - small ribosomal subunit, GO:0009507 - chloroplast, GO:0006412 - translation		
15775	SRT	Srt	SLENDER-GLUME RELATED TRANSPOSABLE ELEMENT	slender-glume related transposable element			7	AB072932.	 Other						GO:0032196 - transposition		
15776	_	H3	_	H3 histone, Histone 3			6	U25664. A2Y533. Q2RAD9. M15664.	 Other	Os06g0160001					GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome		
15777	BIDK1	OsBIDK1, OsDGK1, DGK1	BTH-INDUCIBLE DIACYLGLYCEROL KINASE 1	benzothiadiazole-inducible Diacylglycerol Kinase 1, BTH-inducible Diacylglycerol Kinase 1, BTH-inducible DGK 1, Diacylglycerol kinase 1	BTH-INDUCIBLE DIACYLGLYCEROL KINASE 1	dgk1, dgk1-1, dgk1-2	4	DQ237915.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0634700	LOC_Os04g54200.2, LOC_Os04g54200.1				GO:0004143 - diacylglycerol kinase activity, GO:0009651 - response to salt stress, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, GO:0048364 - root development, GO:0003951 - NAD+ kinase activity	TO:0000482 - chemical stress sensitivity, TO:0001013 - lateral root number, TO:0000656 - root development trait, TO:0000306 - root thickness, TO:0006001 - salt tolerance, TO:0000074 - blast disease	PO:0009005 - root , PO:0007520 - root development stage 
15778	DRB1-3	OsRBP, OsDRB1b, DRB1b, OsDRB1-3	DOUBLE-STRANDED RNA BINDING PROTEIN 1-3	dsRNA binding protein RBP, RNA binding protein, dsRNA-binding protein 1b, double-stranded RNA binding protein 1-3	DOUBLE-STRANDED RNA BINDING PROTEIN 1-3		12	DQ009988. Q0IQN6. GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0109900	LOC_Os12g01916.1				GO:0009414 - response to water deprivation, GO:0016075 - rRNA catabolic process, GO:0004525 - ribonuclease III activity, GO:0003725 - double-stranded RNA binding, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0010224 - response to UV-B, GO:0030422 - production of siRNA involved in RNA interference, GO:0031053 - primary microRNA processing, GO:0031054 - pre-microRNA processing	TO:0000175 - bacterial blight disease resistance, TO:0000601 - UV-B light sensitivity, TO:0000276 - drought tolerance	
15779	_		_	avenin-like protein, B-type avenin-like protein				EU096551.							GO:0045735 - nutrient reservoir activity		
15780	F2KP1	OsF2KP1	FRUCTOSE-6-PHOSPHATE 2-KINASE/FRUCTOSE-2,6- BISPHOSPHATASE 1	fructose-6-phosphate-2-kinase/fructose-2, 6-bisphosphatase 1, F6P2K/F26BPase1	FRUCTOSE-6-PHOSPHATE 2-KINASE/FRUCTOSE-2,6- BISPHOSPHATASE 1	f2kp1, f2kp1-1	5	DQ012288.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0164100	LOC_Os05g07130.1, LOC_Os05g07130.2				GO:0006003 - fructose 2,6-bisphosphate metabolic process, GO:0001666 - response to hypoxia, GO:0005524 - ATP binding, GO:0003824 - catalytic activity	TO:0006001 - salt tolerance, TO:0000328 - sucrose content, TO:0000015 - oxygen sensitivity	PO:0025034 - leaf 
15781	F2KP2	OsF2KP2	FRUCTOSE-6-PHOSPHATE 2-KINASE/FRUCTOSE-2,6- BISPHOSPHATASE 2	"\"fructose-6-phosphate-2-kinase/fructose-2, 6-bisphosphatase 2\", F6P2K/F26BPase2, Fru-6-P 2-kinase/Fru-bisphosphatase 2"	FRUCTOSE-6-PHOSPHATE 2-KINASE/FRUCTOSE-2,6- BISPHOSPHATASE 2	Osf2kp2, f2kp2, f2kp2-1, f2kp2-2, f2kp2-3, f2kp2-4	3	Dark reaction group D3. GO:2001070: starch binding.	 Character as QTL - Grain quality,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os03g0294200	LOC_Os03g18310.1, LOC_Os03g18310.2, LOC_Os03g18310.3				GO:0005886 - plasma membrane, GO:0009960 - endosperm development, GO:0006000 - fructose metabolic process, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0019252 - starch biosynthetic process, GO:0006003 - fructose 2,6-bisphosphate metabolic process, GO:0003873 - 6-phosphofructo-2-kinase activity, GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity, GO:0001666 - response to hypoxia	TO:0002656 - starch grain shape, TO:0000713 - brittle endosperm, TO:0000328 - sucrose content, TO:0000015 - oxygen sensitivity, TO:0000487 - endosperm color, TO:0000196 - amylose content, TO:0000104 - floury endosperm	PO:0009089 - endosperm , PO:0007633 - endosperm development stage 
15782	_	OsUGlcAE1	_	UDP-glucuronic acid 4-epimerase 1			2	DQ333338.	 Biochemical character	Os03g0249500	LOC_Os03g14540.1				GO:0044237 - cellular metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0050662 - coenzyme binding, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives		
15783	UGLCAE2	OsUGlcAE2, OsUGA4E, UGA4E	UDP-GLUCURONIC ACID 4-EPIMERASE 2	UDP-glucuronic acid 4-epimerase 2	UDP-GLUCURONIC ACID 4-EPIMERASE 2		8	DQ333337. OsUGA4E in Zhu et al. 2021.	 Biochemical character	Os08g0526100	LOC_Os08g41440.1				GO:0044237 - cellular metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0005802 - trans-Golgi network, GO:0005768 - endosome, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives, GO:0050662 - coenzyme binding		
15784	_	OsUGlcAE3	_	UDP-glucuronic acid 4-epimerase 3			2	DQ333336.	 Biochemical character	Os02g0791500	LOC_Os02g54890.1				GO:0044237 - cellular metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives, GO:0050662 - coenzyme binding		
15785	_	OsUGlcAE4	_	UDP-glucuronic acid 4-epimerase 4			9		 Biochemical character	Os09g0504000	LOC_Os09g32670.1				GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0005975 - carbohydrate metabolic process		
15786	_	OsUGlcAE5, UGlcAE5, OsSTA172	_	UDP-glucuronic acid 4-epimerase 5			6	a mature anther-preferentially expressed gene. LOC_Os06g08810.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0187200	LOC_Os06g08810.1				GO:0005768 - endosome, GO:0005802 - trans-Golgi network, GO:0005975 - carbohydrate metabolic process, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives		PO:0009066 - anther 
15787	_	trnG(GCC), trnG	_	tRNA-Gly			3	X14039, M35993.									
15788	ACBP	ACBP	ACYL-COA-BINDING PROTEIN	acyl-CoA-binding protein	ACYL-COA-BINDING PROTEIN			AY121834.									
15789	HMGRII	HMGR II, OsHMGRII, Hmg2, HMGR2, HMGR 2, OsHMGR2, OsHMGR2, HMGR1, OsHMGR1	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE II	3-hydroxy-3-methylglutaryl coenzyme A reductase II, 3-hydroxy-3-methylglutaryl-CoA reductase 2	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE II		9	U95816, U43961. GO: 0060964: regulation of gene silencing by miRNA. HMGR1 in Chen et al. 2018. GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0492700	LOC_Os09g31970.1				GO:0009416 - response to light stimulus, GO:0016126 - sterol biosynthetic process, GO:0015936 - coenzyme A metabolic process, GO:0009408 - response to heat, GO:0050661 - NADP or NADPH binding, GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity, GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway, GO:0042282 - hydroxymethylglutaryl-CoA reductase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0016104 - triterpenoid biosynthetic process, GO:0016021 - integral to membrane	TO:0000621 - inflorescence development trait, TO:0000432 - temperature response trait, TO:0000075 - light sensitivity	
15790	HMGRIII	HMGR III, OsHMGRIII, Hmg3, HMGR3, HMGR 3, OsHMGR3, HMGR2, OsHMGR2, OsOMT	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE III	3-hydroxy-3-methylglutaryl coenzyme A reductase III, 3-hydroxy-3-methylglutaryl-CoA reductase 3	3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE III		8	AF110382. Q9XHL5. GO: 0060964: regulation of gene silencing by miRNA. AU101521, AU101522. HMGR2 in Chen et al. 2018. OsOMT (O-methyltransferase) in Fang et al. 2020. GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0512700	LOC_Os08g40180.1				GO:0050661 - NADP or NADPH binding, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0015936 - coenzyme A metabolic process, GO:0016104 - triterpenoid biosynthetic process, GO:0009416 - response to light stimulus, GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity, GO:0016126 - sterol biosynthetic process, GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway, GO:0042282 - hydroxymethylglutaryl-CoA reductase activity	TO:0000075 - light sensitivity, TO:0000432 - temperature response trait	
15791	_	OsCGT, CGT	_	C-glycosyltransferase, UDP-glycosyltransferase 708A6			6	a 49-kDa family 1 glycosyltransferase. FM179712. Os06g0288200 (in Ncbi and UniProt).	 Coloration - Anthocyanin,  Biochemical character	Os06g0288300	LOC_Os06g18010.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0009813 - flavonoid biosynthetic process	TO:0000290 - flavonoid content	
15792	_	Z100a	_	Z100a snoRNA, Z100a small nucleolar RNA			6	AJ320255. Location: 2nd intron of rpS20 gene.									
15793	_	Z100b	_	Z100b snoRNA, Z100b small nucleolar RNA			6	AJ320256.									
15794	_	Z100c	_	Z100c snoRNA, Z100c small nucleolar RNA			6	AJ307912.									
15795	_	Z100d	_	Z100d snoRNA, Z100d small nucleolar RNA			6	AJ307913.									
15796	_	Z101	_	Z101 snoRNA, Z101 small nucleolar RNA			1	AJ307914.									
15797	_	Z102	_	Z102 snoRNA, Z102 small nucleolar RNA			1	AJ307915.									
15798	_	Z103h	_	Z103h snoRNA, Z103h small nucleolar RNA			1	AJ307916.									
15799	_	Z103a	_	Z103a snoRNA, Z103a small nucleolar RNA			3	AJ307917. Location: 2nd intron of NADH dehydrogenase gene.									
15800	_	Z103b	_	Z103b snoRNA, Z103b small nucleolar RNA			3	AJ307918.									
15801	_	Z103c	_	Z103c snoRNA, Z103c small nucleolar RNA			3	AJ307919.									
15802	_	Z103d	_	Z103d snoRNA, Z103d small nucleolar RNA			3	AJ307920.									
15803	_	Z103e	_	Z103e snoRNA, Z103e small nucleolar RNA			1	AJ307921. Location: 2nd intron of rpL30 gene.									
15804	_	Z103f	_	Z103f snoRNA, Z103f small nucleolar RNA			1	AJ307922.									
15805	_	Z103g	_	Z103g snoRNA, Z103g small nucleolar RNA			1	AJ307923.									
15806	_	Z104a	_	Z104a snoRNA, Z104a small nucleolar RNA			3	AJ307924.									
15807	_	Z104b	_	Z104b snoRNA, Z104b small nucleolar RNA			3	AJ307925.									
15808	_	Z105	_	Z105 snoRNA, Z105 small nucleolar RNA			3	AJ307926.									
15809	_	Z106	_	Z106 snoRNA, Z106 small nucleolar RNA			3	AJ307927.									
15810	_	Z107	_	Z107 snoRNA, Z107 small nucleolar RNA			2	AJ307928.									
15811	_	Z108	_	Z108 snoRNA, Z108 small nucleolar RNA			2	AJ307929.									
15812	_	Z109	_	Z109 snoRNA, Z109 small nucleolar RNA			2	AJ307930.									
15813	_	Z110	_	Z110 snoRNA, Z110 small nucleolar RNA			2	AJ307931.									
15814	_	Z111	_	Z111 snoRNA, Z111 small nucleolar RNA			2	AJ307932.									
15815	_	Z112	_	Z112 snoRNA, Z112 small nucleolar RNA			2	AJ320263.									
15816	_	Z113	_	Z113 snoRNA, Z113 small nucleolar RNA			2	AJ320264.									
15817	_	Z114a	_	Z114a snoRNA, Z114a small nucleolar RNA			2	AJ315478.									
15818	_	Z114b	_	Z114b snoRNA, Z114b small nucleolar RNA			2	AJ315479.									
15819	PP2C6	OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1	PROTEIN PHOSPHATASE 2C6	protein phosphatase 2C6, protein phosphatase 2C 6, protein phosphatase 10, OsABI-LIKE1, ABI-LIKE1, ABI-LIKE 1	PROTEIN PHOSPHATASE 2C6	osabil1	1	Q0JLP9. OsPP2C06 in Min et al. 2021.	 Tolerance and resistance - Stress tolerance	Os01g0583100	LOC_Os01g40094.1				GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0006970 - response to osmotic stress, GO:0006470 - protein amino acid dephosphorylation, GO:0009737 - response to abscisic acid stimulus, GO:0080134 - regulation of response to stress, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000164 - stress trait, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	
15820	NAC104	OMTN6, ONAC104, DLN206, OsDLN206	NAC DOMAIN-CONTAINING PROTEIN 104	NAC domain-containing protein 104, NAC domain-containing protein 104, miR164-targeted NAC6, Oryza miR164-targeted NAC6, DLN repressor 206, DLN motif protein 206	NAC DOMAIN-CONTAINING PROTEIN 104		8	miR164c target gene.	 Other,  Tolerance and resistance - Stress tolerance	Os08g0200600	LOC_Os08g10080.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
15821	_	OMT7	_	Oryza miR164-targeted gene 7			3	Q10E49.	 Biochemical character	Os03g0708100	LOC_Os03g50040.1, LOC_Os03g50040.2				GO:0048244 - phytanoyl-CoA dioxygenase activity, GO:0046872 - metal ion binding, GO:0031418 - L-ascorbic acid binding, GO:0006631 - fatty acid metabolic process		
15822	_	OMT8	_	Oryza miR164-targeted gene 8			5	Q65WW7. LOC_Os05g39650. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os05g0473900	LOC_Os05g39650.1				GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0048244 - phytanoyl-CoA dioxygenase activity, GO:0006631 - fatty acid metabolic process, GO:0031418 - L-ascorbic acid binding		
15823	ONAC122	NAC122	NAC DOMAIN-CONTAINING PROTEIN 122	NAC domain-containing protein 122	NAC DOMAIN-CONTAINING PROTEIN 122				 Other,  Tolerance and resistance - Disease resistance							TO:0000074 - blast disease	
15824	ONAC131	NAC131	NAC DOMAIN-CONTAINING PROTEIN 131	NAC domain-containing protein 131	NAC DOMAIN-CONTAINING PROTEIN 131				 Other,  Tolerance and resistance - Disease resistance							TO:0000074 - blast disease	
15825	IREN		IMMUNE RELATED ENDONUCLEASE	immune related endonuclease	IMMUNE RELATED ENDONUCLEASE		10	a Ca2+-dependent nuclease. IREN directly participates in DNA fragmentation during hypersensitive response cell death.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0203000	LOC_Os10g13550.1, LOC_Os10g13550.2, LOC_Os10g13550.3				GO:0010043 - response to zinc ion, GO:0004527 - exonuclease activity, GO:0004519 - endonuclease activity, GO:0009409 - response to cold, GO:0009626 - plant-type hypersensitive response, GO:0006308 - DNA catabolic process, GO:0005634 - nucleus, GO:0005509 - calcium ion binding, GO:0009268 - response to pH	TO:0000112 - disease resistance	
15826	NAC16	ONAC016, ONAC16, OsNAC016, OsNAC16	NAC DOMAIN-CONTAINING PROTEIN 16	NAC domain-containing protein 016, NAC domain-containing protein 16	NAC DOMAIN-CONTAINING PROTEIN 16	osnac016, osnac016-1, osnac016-2	1	TO:0000995: aluminum content trait.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0104200	LOC_Os01g01430.1				GO:0002213 - defense response to insect, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010044 - response to aluminum ion	TO:0000354 - aluminum sensitivity, TO:0000205 - white-backed planthopper resistance, TO:0000516 - relative root length	PO:0000025 - root tip , PO:0009005 - root 
15827	NAC20	ONAC020, ONAC20, DLN1, OsDLN1	NAC DOMAIN-CONTAINING PROTEIN 20	NAC domain-containing protein 020, NAC domain-containing protein 20, DLN repressor 1, DLN motif protein 1	NAC DOMAIN-CONTAINING PROTEIN 20	osnac20, osnac20-1, osnac20-2	1		 Seed - Morphological traits - Grain shape,  Other,  Seed - Physiological traits - Storage substances	Os01g0104500	LOC_Os01g01470.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0019252 - starch biosynthetic process	TO:0000696 - starch content, TO:0000484 - seed shape, TO:0002653 - endosperm storage protein content, TO:0000598 - protein content	PO:0005360 - aleurone layer , PO:0009009 - plant embryo , PO:0009089 - endosperm 
15828	NAC30	ONAC030, ONAC30	NAC DOMAIN-CONTAINING PROTEIN 30	NAC domain-containing protein 030, NAC domain-containing protein 30	NAC DOMAIN-CONTAINING PROTEIN 30		1	LOC_Os01g23710.		Os01g0339500	LOC_Os01g23710.1						
15829	NAC33	ONAC033, ONAC33	NAC DOMAIN-CONTAINING PROTEIN 33	NAC domain-containing protein 033, NAC domain-containing protein 33	NAC DOMAIN-CONTAINING PROTEIN 33		1	LOC_Os01g28050.		Os01g0378400	LOC_Os01g28050.1						
15830	NAC34	ONAC034, ONAC34	NAC DOMAIN-CONTAINING PROTEIN 34	NAC domain-containing protein 034, NAC domain-containing protein 34	NAC DOMAIN-CONTAINING PROTEIN 34		1	LOC_Os01g48460 (not found in MSU Rice Genome Annotation Project Release 7 data).									
15831	NAC35	ONAC035, ONAC35	NAC DOMAIN-CONTAINING PROTEIN 35	NAC domain-containing protein 035, NAC domain-containing protein 35	NAC DOMAIN-CONTAINING PROTEIN 35		1	LOC_Os01g59640.		Os01g0811500	LOC_Os01g59640.1						
15832	NAC38	ONAC038, ONAC38	NAC DOMAIN-CONTAINING PROTEIN 38	NAC domain-containing protein 038, NAC domain-containing protein 38	NAC DOMAIN-CONTAINING PROTEIN 38		1	LOC_Os01g71790.	 Other	Os01g0946200	LOC_Os01g71790.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15833	NAC43	ONAC043, ONAC43, DLN44, OsDLN44	NAC DOMAIN-CONTAINING PROTEIN 43	NAC domain-containing protein 043, NAC domain-containing protein 43, DLN repressor 44, DLN motif protein 44	NAC DOMAIN-CONTAINING PROTEIN 43		2		 Other	Os02g0165400	LOC_Os02g06950.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15834	NAC44	ONAC044, ONAC44	NAC DOMAIN-CONTAINING PROTEIN 44	NAC domain-containing protein 044, NAC domain-containing protein 44	NAC DOMAIN-CONTAINING PROTEIN 44		2	LOC_Os02g18460.	 Other	Os02g0285900	LOC_Os02g18460.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15835	NAC46	ONAC046, ONAC46	NAC DOMAIN-CONTAINING PROTEIN 46	NAC domain-containing protein 046, NAC domain-containing protein 46	NAC DOMAIN-CONTAINING PROTEIN 46		2	LOC_Os02g18470.		Os02g0286000	LOC_Os02g18470.1						
15836	NAC50	ONAC050, ONAC50, OsSGL, SGL, OsNAC02, NAC02	NAC DOMAIN-CONTAINING PROTEIN 50	NAC domain-containing protein 050, NAC domain-containing protein 50, SOG1-like	NAC DOMAIN-CONTAINING PROTEIN 50	Osnac02	2	the potential candidate gene for An-4 (a potential quantitative trait locus for awn development). a putative AtSOG1 ortholog. OsNAC02 in Yan et al. 2024. TO:0000975: grain width. GO:2000904: regulation of starch metabolic process.	 Seed - Morphological traits - Endosperm,  Character as QTL - Grain quality,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Character as QTL - Yield and productivity	Os02g0594800	LOC_Os02g38130.1				GO:0003677 - DNA binding, GO:0005985 - sucrose metabolic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051726 - regulation of cell cycle, GO:0010229 - inflorescence development, GO:0009960 - endosperm development, GO:0010581 - regulation of starch biosynthetic process	TO:0000266 - chalky endosperm, TO:0000162 - seed quality, TO:0002718 - awn anatomy and morphology trait, TO:0000333 - sugar content, TO:0000621 - inflorescence development trait, TO:0000196 - amylose content, TO:0000449 - grain yield per plant, TO:0000072 - awn length, TO:0000104 - floury endosperm, TO:0000618 - crushed grain percentage, TO:0000399 - grain thickness, TO:0000734 - grain length, TO:0000487 - endosperm color, TO:0002655 - starch grain size	PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root , PO:0001083 - inflorescence development stage , PO:0007633 - endosperm development stage , PO:0020103 - flag leaf 
15837	NAC51	ONAC051, ONAC51	NAC DOMAIN-CONTAINING PROTEIN 51	NAC domain-containing protein 051, NAC domain-containing protein 51	NAC DOMAIN-CONTAINING PROTEIN 51		2		 Other	Os02g0623300	LOC_Os02g41450.1				GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15838	NAC52	ONAC052, ONAC52	NAC DOMAIN-CONTAINING PROTEIN 52	NAC domain-containing protein 052, NAC domain-containing protein 52	NAC DOMAIN-CONTAINING PROTEIN 52		2	LOC_Os02g42970.	 Other	Os02g0643600	LOC_Os02g42970.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15839	NAC53	ONAC053, ONAC53	NAC DOMAIN-CONTAINING PROTEIN 53	NAC domain-containing protein 053, NAC domain-containing protein 53	NAC DOMAIN-CONTAINING PROTEIN 53		2	LOC_Os02g51120 (not found in MSU Rice Genome Annotation Project Release 7 data).									
15840	NAC56	ONAC056, ONAC56, OsSWN5, SWN5	NAC DOMAIN-CONTAINING PROTEIN 56	NAC domain-containing protein 056, NAC domain-containing protein 56, secondary wall NAC transcription factor 5, secondary wall-associated NAC 5, SECONDARY WALL NAC DOMAIN PROTEIN 5	NAC DOMAIN-CONTAINING PROTEIN 56		3	JN634074. Os03g0127200 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)). a gene of interest in qPL3-3 (a QTL for panicle length) (Bai et al. 2021).	 Tolerance and resistance - Stress tolerance,  Other		LOC_Os03g03540.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15841	NAC57	ONAC057, ONAC57	NAC DOMAIN-CONTAINING PROTEIN 57	NAC domain-containing protein 057, NAC domain-containing protein 57	NAC DOMAIN-CONTAINING PROTEIN 57		3	LOC_Os03g12120.	 Other	Os03g0221300	LOC_Os03g12120.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15842	NAC64	ONAC064, ONAC64	NAC DOMAIN-CONTAINING PROTEIN 64	NAC domain-containing protein 064, NAC domain-containing protein 64	NAC DOMAIN-CONTAINING PROTEIN 64		3	LOC_Os03g39050.	 Other	Os03g0587700	LOC_Os03g39050.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15843	NAC69	ONAC069, ONAC69	NAC DOMAIN-CONTAINING PROTEIN 69	NAC domain-containing protein 069, NAC domain-containing protein 69	NAC DOMAIN-CONTAINING PROTEIN 69		3	LOC_Os03g39100.	 Other	Os03g0588000	LOC_Os03g39100.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15844	NAC71	ONAC071, ONAC71	NAC DOMAIN-CONTAINING PROTEIN 71	NAC domain-containing protein 071, NAC domain-containing protein 71	NAC DOMAIN-CONTAINING PROTEIN 71		3	LOC_Os03g59730.	 Other	Os03g0811850	LOC_Os03g59730.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15845	NAC76	ONAC076, ONAC76	NAC DOMAIN-CONTAINING PROTEIN 76	NAC domain-containing protein 076, NAC domain-containing protein 76	NAC DOMAIN-CONTAINING PROTEIN 76		3	LOC_Os03g61249.	 Other		LOC_Os03g61249				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15846	NAC77	ONAC077, ONAC77	NAC DOMAIN-CONTAINING PROTEIN 77	NAC domain-containing protein 077, NAC domain-containing protein 77	NAC DOMAIN-CONTAINING PROTEIN 77		3	LOC_Os03g61319.	 Other		LOC_Os03g61319				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15847	NAC78	ONAC078, ONAC78	NAC DOMAIN-CONTAINING PROTEIN 78	NAC domain-containing protein 078, NAC domain-containing protein 78	NAC DOMAIN-CONTAINING PROTEIN 78		3	LOC_Os03g62470.	 Other		LOC_Os03g62470				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15848	NAC79	ONAC079, ONAC79, NAC079, OsNAC079	NAC DOMAIN-CONTAINING PROTEIN 79	NAC domain-containing protein 079, NAC domain-containing protein 79	NAC DOMAIN-CONTAINING PROTEIN 79	nac079, nac079-1, nac079-2	4	GO:1900150: regulation of defense response to fungus.	 Other,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance	Os04g0437000	LOC_Os04g35660.1				GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0048367 - shoot development, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0010105 - negative regulation of ethylene mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0010089 - xylem development, GO:0043067 - regulation of programmed cell death	TO:0000346 - tiller number, TO:0000456 - spikelet number, TO:0000605 - hydrogen peroxide content, TO:0000255 - sheath blight disease resistance, TO:0000396 - grain yield	
15849	NAC80	ONAC080, ONAC80	NAC DOMAIN-CONTAINING PROTEIN 80	NAC domain-containing protein 080, NAC domain-containing protein 80	NAC DOMAIN-CONTAINING PROTEIN 80		4	LOC_Os04g39960.	 Other	Os04g0475400	LOC_Os04g39960.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15850	NAC83	ONAC083, ONAC83	NAC DOMAIN-CONTAINING PROTEIN 83	NAC domain-containing protein 083, NAC domain-containing protein 83	NAC DOMAIN-CONTAINING PROTEIN 83		4		 Other,  Tolerance and resistance - Insect resistance	Os04g0619000	LOC_Os04g52810.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
15851	NAC84	ONAC084, ONAC84, DLN128, OsDLN128	NAC DOMAIN-CONTAINING PROTEIN 84	NAC domain-containing protein 084, NAC domain-containing protein 84, DLN repressor 128, DLN motif protein 128	NAC DOMAIN-CONTAINING PROTEIN 84		4		 Other	Os04g0691300	LOC_Os04g59470.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15852	NAC85	ONAC085, ONAC85	NAC DOMAIN-CONTAINING PROTEIN 85	NAC domain-containing protein 085, NAC domain-containing protein 85	NAC DOMAIN-CONTAINING PROTEIN 85		5	LOC_Os05g10620.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os05g0194500	LOC_Os05g10620.1, LOC_Os05g10620.2, LOC_Os05g10620.3				GO:0051607 - defense response to virus, GO:0009314 - response to radiation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0000161 - radiation response trait, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
15853	NAC86	ONAC086, ONAC86	NAC DOMAIN-CONTAINING PROTEIN 86	NAC domain-containing protein 086, NAC domain-containing protein 86	NAC DOMAIN-CONTAINING PROTEIN 86		5	LOC_Os05g25960.		Os05g0325300	LOC_Os05g25960.1						
15854	NAC87	ONAC087, ONAC87	NAC DOMAIN-CONTAINING PROTEIN 87	NAC domain-containing protein 087, NAC domain-containing protein 87	NAC DOMAIN-CONTAINING PROTEIN 87		5	LOC_Os05g34600.	 Other	Os05g0418800	LOC_Os05g34600.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15855	NAC88	ONAC088, ONAC88, OsNAC52, NAC52	NAC DOMAIN-CONTAINING PROTEIN 88	NAC domain-containing protein 088, NAC domain-containing protein 88	NAC DOMAIN-CONTAINING PROTEIN 88		5	miR5075 taget gene. OsNAC52 in Zhou et al. 2022.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0421600	LOC_Os05g34830.3, LOC_Os05g34830.2, LOC_Os05g34830.1				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
15856	NAC89	ONAC089, ONAC89	NAC DOMAIN-CONTAINING PROTEIN 89	NAC domain-containing protein 089, NAC domain-containing protein 89	NAC DOMAIN-CONTAINING PROTEIN 89		5	LOC_Os05g43960.		Os05g0515800	LOC_Os05g43960.1						
15857	NAC91	ONAC091, ONAC91, OsSOG1, SOG1	NAC DOMAIN-CONTAINING PROTEIN 91	NAC domain-containing protein 091, NAC domain-containing protein 91, SUPPRESSOR OF GAMMA RESPONSE1	NAC DOMAIN-CONTAINING PROTEIN 91	OsSOG1-7A	6	LOC_Os06g15690 (not found in MSU Rice Genome Annotation Project Release 7 data). NAM domain protein. AJ575245. a putative AtSOG1 ortholog. GO:2001020: regulation of response to DNA damage stimulus.	 Tolerance and resistance - Stress tolerance,  Other,  Seed	Os06g0267500					GO:0003677 - DNA binding, GO:0006282 - regulation of DNA repair, GO:0010332 - response to gamma radiation, GO:0006979 - response to oxidative stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000077 - DNA damage checkpoint, GO:0006974 - response to DNA damage stimulus, GO:0040020 - regulation of meiosis	TO:0002657 - oxidative stress, TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15858	NAC94	ONAC094, ONAC94	NAC DOMAIN-CONTAINING PROTEIN 94	NAC domain-containing protein 094, NAC domain-containing protein 94	NAC DOMAIN-CONTAINING PROTEIN 94		6	LOC_Os06g36480.	 Other	Os06g0560300	LOC_Os06g36480.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15859	NAC95	ONAC095, ONAC95	NAC DOMAIN-CONTAINING PROTEIN 95	NAC domain-containing protein 095, NAC domain-containing protein 95	NAC DOMAIN-CONTAINING PROTEIN 95		6	LOC_Os06g51070.	 Other,  Tolerance and resistance - Stress tolerance	Os06g0726300	LOC_Os06g51070.1				GO:0048281 - inflorescence morphogenesis, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009965 - leaf morphogenesis, GO:0009751 - response to salicylic acid stimulus, GO:0010200 - response to chitin, GO:0045792 - negative regulation of cell size	TO:0006001 - salt tolerance	
15860	NAC97	ONAC097, ONAC97	NAC DOMAIN-CONTAINING PROTEIN 97	NAC domain-containing protein 097, NAC domain-containing protein 97	NAC DOMAIN-CONTAINING PROTEIN 97		7	LOC_Os07g09740.		Os07g0195600	LOC_Os07g09740.1						
15861	NAC98	ONAC098, ONAC98	NAC DOMAIN-CONTAINING PROTEIN 98	NAC domain-containing protein 098, NAC domain-containing protein 98	NAC DOMAIN-CONTAINING PROTEIN 98		7	LOC_Os07g09830.		Os07g0196500	LOC_Os07g09830.1						
15862	NAC99	ONAC099, ONAC99	NAC DOMAIN-CONTAINING PROTEIN 99	NAC domain-containing protein 099, NAC domain-containing protein 99	NAC DOMAIN-CONTAINING PROTEIN 99		7	LOC_Os07g09860.		Os07g0196800	LOC_Os07g09860.1						
15863	NAC100	ONAC100	NAC DOMAIN-CONTAINING PROTEIN 100	NAC domain-containing protein 100	NAC DOMAIN-CONTAINING PROTEIN 100		7	LOC_Os07g13920.		Os07g0242800	LOC_Os07g13920.1						
15864	NAC101	ONAC101	NAC DOMAIN-CONTAINING PROTEIN 101	NAC domain-containing protein 101	NAC DOMAIN-CONTAINING PROTEIN 101		7	LOC_Os07g17180.	 Other	Os07g0272700	LOC_Os07g17180.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15865	NAC102	ONAC102	NAC DOMAIN-CONTAINING PROTEIN 102	NAC domain-containing protein 102	NAC DOMAIN-CONTAINING PROTEIN 102		7	LOC_Os07g27340.		Os07g0457100	LOC_Os07g27340.1						
15866	NAC103	ONAC103, OsNAC103, OsNAC18, NAC18	NAC DOMAIN-CONTAINING PROTEIN 103	NAC domain-containing protein 103, NAC domain-containing protein 18	NAC DOMAIN-CONTAINING PROTEIN 103	osnac103	7	OsNAC18 in Wang et al. 2016. GO:1905614: negative regulation of developmental vegetative growth. GO:1900055: regulation of leaf senescence. PO:0030123: panicle inflorescence.GO:1903648: positive regulation of chlorophyll catabolic process.	 Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os07g0683200	LOC_Os07g48450.3, LOC_Os07g48450.2, LOC_Os07g48450.1				GO:0009685 - gibberellin metabolic process, GO:0009735 - response to cytokinin stimulus, GO:0045786 - negative regulation of cell cycle, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009691 - cytokinin biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0009646 - response to absence of light, GO:0015996 - chlorophyll catabolic process, GO:0009959 - negative gravitropism, GO:0009738 - abscisic acid mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0009736 - cytokinin mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0051607 - defense response to virus, GO:0010150 - leaf senescence, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress, GO:0009823 - cytokinin catabolic process, GO:0009414 - response to water deprivation, GO:0080006 - internode patterning, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0009739 - response to gibberellin stimulus	TO:0000135 - leaf length, TO:0002660 - cytokinin content, TO:0002689 - leaf sheath length, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000326 - leaf color, TO:0000167 - cytokinin sensitivity, TO:0002664 - leaf yellowing tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000145 - internode length, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000396 - grain yield, TO:0000269 - 100-seed weight, TO:0000346 - tiller number, TO:0000148 - viral disease resistance, TO:0000567 - tiller angle, TO:0002693 - gravity response trait, TO:0000020 - black streak dwarf virus resistance, TO:0000316 - photosynthetic ability, TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000386 - rice ragged stunt virus resistance, TO:0000249 - leaf senescence, TO:0000166 - gibberellic acid sensitivity	PO:0020104 - leaf sheath , PO:0009038 - palea , PO:0009037 - lemma , PO:0020142 - stem internode , PO:0020141 - stem node , PO:0006073 - intercalary meristem , PO:0025034 - leaf , PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0001054 - 4 leaf senescence stage , PO:0009047 - stem , PO:0004709 - axillary bud , PO:0009049 - inflorescence , PO:0025395 - floral organ 
15867	NAC105	ONAC105	NAC DOMAIN-CONTAINING PROTEIN 105	NAC domain-containing protein 105	NAC DOMAIN-CONTAINING PROTEIN 105		8	LOC_Os08g23880.		Os08g0327800	LOC_Os08g23880.1						
15868	NAC106	ONAC106	NAC DOMAIN-CONTAINING PROTEIN 106	NAC domain-containing protein 106	NAC DOMAIN-CONTAINING PROTEIN 106	onac106-1D	8	a senescence-associated NAC (senNAC). GO:1900056: negative regulation of leaf senescence. GO:1901002: positive regulation of response to salt stress.	 Vegetative organ - Leaf,  Other,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os08g0433500	LOC_Os08g33670.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000567 - tiller angle	PO:0001054 - 4 leaf senescence stage 
15869	NAC108	ONAC108	NAC DOMAIN-CONTAINING PROTEIN 108	NAC domain-containing protein 108	NAC DOMAIN-CONTAINING PROTEIN 108		9	LOC_Os09g24560.	 Other	Os09g0411900	LOC_Os09g24560.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15870	YL3	ONAC109, NAC109, OsYL3	YELLOW LEAF 3	NAC domain-containing protein 109, yellow leaf 3	NAC DOMAIN-CONTAINING PROTEIN 109	yl3	9	TO:0000992: gibberellin biosynthesis trait. TO:0020106: Indole-3-acetic acid content.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Vegetative organ - Root,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Coloration - Others,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Coloration - Chlorophyll	Os09g0552800	LOC_Os09g38000.1				GO:0046345 - abscisic acid catabolic process, GO:0009658 - chloroplast organization, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0051510 - regulation of unidimensional cell growth, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0003677 - DNA binding, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010364 - regulation of ethylene biosynthetic process	TO:0000447 - filled grain number, TO:0000605 - hydrogen peroxide content, TO:0000325 - soluble protein content, TO:0000357 - growth and development trait, TO:0000249 - leaf senescence, TO:0002672 - auxin content, TO:0002675 - gibberellic acid content, TO:0002667 - abscisic acid content, TO:0000592 - 1000-dehulled grain weight, TO:0000440 - grain number per plant, TO:0000455 - seed set percent, TO:0000040 - panicle length, TO:0001015 - photosynthetic rate, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000145 - internode length, TO:0000227 - root length, TO:0000576 - stem length, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000326 - leaf color	PO:0001054 - 4 leaf senescence stage 
15871	NAC110	ONAC110	NAC DOMAIN-CONTAINING PROTEIN 110	NAC domain-containing protein 110	NAC DOMAIN-CONTAINING PROTEIN 110		9	LOC_Os09g38010.	 Other	Os09g0552900	LOC_Os09g38010.1, LOC_Os09g38010.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15872	NAC111	ONAC111	NAC DOMAIN-CONTAINING PROTEIN 111	NAC domain-containing protein 111	NAC DOMAIN-CONTAINING PROTEIN 111		10	LOC_Os10g09820.	 Other	Os10g0177000	LOC_Os10g09820.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15873	NAC112	ONAC112	NAC DOMAIN-CONTAINING PROTEIN 112	NAC domain-containing protein 112	NAC DOMAIN-CONTAINING PROTEIN 112		10	LOC_Os10g25620.	 Other	Os10g0395650	LOC_Os10g25620.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15874	NAC113	ONAC113	NAC DOMAIN-CONTAINING PROTEIN 113	NAC domain-containing protein 113	NAC DOMAIN-CONTAINING PROTEIN 113		10	LOC_Os10g25630.		Os10g0396000	LOC_Os10g25630.1						
15875	NAC114	ONAC114	NAC DOMAIN-CONTAINING PROTEIN 114	NAC domain-containing protein 114	NAC DOMAIN-CONTAINING PROTEIN 114		10	LOC_Os10g25640.	 Other	Os10g0396050	LOC_Os10g25640.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15876	NAC115	ONAC115	NAC DOMAIN-CONTAINING PROTEIN 115	NAC domain-containing protein 115	NAC DOMAIN-CONTAINING PROTEIN 115		10	LOC_Os10g26240.	 Other	Os10g0401550	LOC_Os10g26240.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15877	NAC116	ONAC116	NAC DOMAIN-CONTAINING PROTEIN 116	NAC domain-containing protein 116	NAC DOMAIN-CONTAINING PROTEIN 116		10	LOC_Os10g26250.			LOC_Os10g26250						
15878	NAC117	ONAC117	NAC DOMAIN-CONTAINING PROTEIN 117	NAC domain-containing protein 117	NAC DOMAIN-CONTAINING PROTEIN 117		10	LOC_Os10g26270.	 Other	Os10g0402100	LOC_Os10g26270.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15879	NAC118	ONAC118	NAC DOMAIN-CONTAINING PROTEIN 118	NAC domain-containing protein 118	NAC DOMAIN-CONTAINING PROTEIN 118		10	LOC_Os10g27360.	 Other	Os10g0413700	LOC_Os10g27360.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15880	NAC119	ONAC119	NAC DOMAIN-CONTAINING PROTEIN 119	NAC domain-containing protein 119	NAC DOMAIN-CONTAINING PROTEIN 119		10	LOC_Os10g27390.	 Other	Os10g0414000	LOC_Os10g27390.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15881	NAC120	ONAC120	NAC DOMAIN-CONTAINING PROTEIN 120	NAC domain-containing protein 120	NAC DOMAIN-CONTAINING PROTEIN 120	osnac120, osnac120-1, osnac120-2, osnac120-cr1, osnac120-cr2	10	GO:0080148: negative regulation of response to water deprivation. GO:0090333: regulation of stomatal closure. GO:0090567: reproductive shoot system development.	 Tolerance and resistance - Stress tolerance,  Other,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity	Os10g0477600	LOC_Os10g33760.1				GO:0003677 - DNA binding, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0045927 - positive regulation of growth, GO:0051512 - positive regulation of unidimensional cell growth, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0010118 - stomatal movement, GO:0010229 - inflorescence development, GO:0030104 - water homeostasis	TO:0000276 - drought tolerance, TO:0000357 - growth and development trait, TO:0002667 - abscisic acid content, TO:0002675 - gibberellic acid content, TO:0000455 - seed set percent, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001083 - inflorescence development stage 
15882	NAC121	ONAC121	NAC DOMAIN-CONTAINING PROTEIN 121	NAC domain-containing protein 121	NAC DOMAIN-CONTAINING PROTEIN 121		10	LOC_Os10g42130.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os10g0571600	LOC_Os10g42130.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0051607 - defense response to virus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000386 - rice ragged stunt virus resistance	
15883	NAC123	ONAC123, N77	NAC DOMAIN-CONTAINING PROTEIN 123	NAC domain-containing protein 123, NAC domain containing protein 77	NAC DOMAIN-CONTAINING PROTEIN 123		11	LOC_Os11g03310. N77 in Sharma et al. 2015. one of the predicted targets for Osa-miR820.	 Tolerance and resistance - Disease resistance,  Other	Os11g0127000	LOC_Os11g03310.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0051607 - defense response to virus, GO:0003677 - DNA binding	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
15884	NAC124	ONAC124, DLN245, OsDLN245	NAC DOMAIN-CONTAINING PROTEIN 124	NAC domain-containing protein 124, DLN repressor 245, DLN motif protein 245	NAC DOMAIN-CONTAINING PROTEIN 124		11		 Other	Os11g0140500	LOC_Os11g04470.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15885	NAC125	ONAC125	NAC DOMAIN-CONTAINING PROTEIN 125	NAC domain-containing protein 125	NAC DOMAIN-CONTAINING PROTEIN 125		11	LOC_Os11g04960.	 Other	Os11g0146900	LOC_Os11g04960.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15886	NAC126	ONAC126	NAC DOMAIN-CONTAINING PROTEIN 126	NAC domain-containing protein 126	NAC DOMAIN-CONTAINING PROTEIN 126		11	LOC_Os11g07700.	 Other	Os11g0179300	LOC_Os11g07700.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15887	NAC127	ONAC127, OsNAC127, OsEnS-145	NAC DOMAIN-CONTAINING PROTEIN 127	NAC domain-containing protein 127, endosperm-specific gene 145	NAC DOMAIN-CONTAINING PROTEIN 127	onac127, onac127-1, onac127-2, onac127-3	11		 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Other,  Seed - Morphological traits - Endosperm	Os11g0512100	LOC_Os11g31340.1				GO:0009408 - response to heat, GO:0009960 - endosperm development, GO:0008643 - carbohydrate transport, GO:0010431 - seed maturation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009628 - response to abiotic stimulus, GO:0003677 - DNA binding	TO:0000455 - seed set percent, TO:0000696 - starch content, TO:0000168 - abiotic stress trait, TO:0002661 - seed maturation, TO:0000259 - heat tolerance, TO:0000396 - grain yield, TO:0000100 - shrunken endosperm	PO:0007633 - endosperm development stage , PO:0009010 - seed , PO:0009084 - pericarp , PO:0007632 - seed maturation stage 
15888	NAC128	ONAC128	NAC DOMAIN-CONTAINING PROTEIN 128	NAC domain-containing protein 128	NAC DOMAIN-CONTAINING PROTEIN 128		11	LOC_Os11g31360.	 Other	Os11g0512200	LOC_Os11g31360.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15889	NAC129	ONAC129, OsNAC129	NAC DOMAIN-CONTAINING PROTEIN 129	NAC domain-containing protein 129	NAC DOMAIN-CONTAINING PROTEIN 129	osnac129, onac129, onac129-1, onac129-2, onac129-3	11	PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Other,  Vegetative organ - Root,  Seed - Physiological traits - Storage substances,  Character as QTL - Plant growth activity,  Seed - Morphological traits - Endosperm,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os11g0512600	LOC_Os11g31380.1				GO:0009408 - response to heat, GO:0010431 - seed maturation, GO:0008643 - carbohydrate transport, GO:0009628 - response to abiotic stimulus, GO:0009960 - endosperm development, GO:0080050 - regulation of seed development, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0010581 - regulation of starch biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0042127 - regulation of cell proliferation, GO:0001558 - regulation of cell growth, GO:0045926 - negative regulation of growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000168 - abiotic stress trait, TO:0002661 - seed maturation, TO:0000259 - heat tolerance, TO:0000227 - root length, TO:0002730 - grain shape, TO:0000696 - starch content, TO:0000207 - plant height, TO:0000196 - amylose content, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000615 - abscisic acid sensitivity, TO:0000397 - grain size, TO:0000653 - seed development trait, TO:0002677 - brassinosteroid sensitivity, TO:0000396 - grain yield, TO:0000455 - seed set percent, TO:0000100 - shrunken endosperm	PO:0009009 - plant embryo , PO:0009029 - stamen , PO:0009010 - seed , PO:0009047 - stem , PO:0020141 - stem node , PO:0001170 - seed development stage , PO:0020142 - stem internode , PO:0009049 - inflorescence , PO:0009088 - seed coat , PO:0009089 - endosperm 
15890	NAC130	ONAC130	NAC DOMAIN-CONTAINING PROTEIN 130	NAC domain-containing protein 130	NAC DOMAIN-CONTAINING PROTEIN 130		11	LOC_Os11g45950.	 Other	Os11g0686700	LOC_Os11g45950.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15891	NAC131	ONAC131	NAC DOMAIN-CONTAINING PROTEIN 131	NAC domain-containing protein 131	NAC DOMAIN-CONTAINING PROTEIN 131		12	LOC_Os12g03040.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os12g0123700	LOC_Os12g03040.1				GO:0009751 - response to salicylic acid stimulus, GO:0051607 - defense response to virus, GO:0009635 - response to herbicide, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000020 - black streak dwarf virus resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000148 - viral disease resistance, TO:0000058 - herbicide sensitivity	
15892	NAC133	ONAC133	NAC DOMAIN-CONTAINING PROTEIN 133	NAC domain-containing protein 133	NAC DOMAIN-CONTAINING PROTEIN 133		12	LOC_Os12g04230.	 Other	Os12g0137000	LOC_Os12g04230.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15893	NAC134	ONAC134	NAC DOMAIN-CONTAINING PROTEIN 134	NAC domain-containing protein 134	NAC DOMAIN-CONTAINING PROTEIN 134		12		 Other,  Tolerance and resistance - Insect resistance	Os12g0156100	LOC_Os12g05990.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0002213 - defense response to insect	TO:0000205 - white-backed planthopper resistance	
15894	NAC135	ONAC135	NAC DOMAIN-CONTAINING PROTEIN 135	NAC domain-containing protein 135	NAC DOMAIN-CONTAINING PROTEIN 135		12	LOC_Os12g07790.	 Tolerance and resistance - Stress tolerance,  Other	Os12g0177550	LOC_Os12g07790.1				GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0006001 - salt tolerance	
15895	NAC136	ONAC136, OsSTA279	NAC DOMAIN-CONTAINING PROTEIN 136	NAC domain-containing protein 136	NAC DOMAIN-CONTAINING PROTEIN 136		12	LOC_Os12g22630. a mature anther-preferentially expressed gene.	 Other,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0415000	LOC_Os12g22630.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		PO:0009066 - anther 
15896	NAC137	ONAC137	NAC DOMAIN-CONTAINING PROTEIN 137	NAC domain-containing protein 137	NAC DOMAIN-CONTAINING PROTEIN 137		12	LOC_Os12g22940.	 Other	Os12g0418300	LOC_Os12g22940.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
15897	NAC138	ONAC138	NAC DOMAIN-CONTAINING PROTEIN 138	NAC domain-containing protein 138	NAC DOMAIN-CONTAINING PROTEIN 138		12	LOC_Os12g23090.	 Other	Os12g0419600	LOC_Os12g23090.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15898	NAC139	ONAC139, OsNAM	NAC DOMAIN-CONTAINING PROTEIN 139	NAC domain-containing protein 139, no apical meristem	NAC DOMAIN-CONTAINING PROTEIN 139		12	OsNAM in Dixit et al. 2015. GO:0080181: lateral root branching.	 Character as QTL - Yield and productivity,  Other,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os12g0477400	LOC_Os12g29330.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0010089 - xylem development, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0010150 - leaf senescence, GO:0045892 - negative regulation of transcription, DNA-dependent	TO:0000625 - spikelet density, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000557 - secondary branch number, TO:0000180 - spikelet fertility, TO:0000447 - filled grain number	
15899	NAC140	ONAC140	NAC DOMAIN-CONTAINING PROTEIN 140	NAC domain-containing protein 140	NAC DOMAIN-CONTAINING PROTEIN 140		12		 Tolerance and resistance - Insect resistance,  Other	Os12g0630800	LOC_Os12g43530.1				GO:0002213 - defense response to insect, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000205 - white-backed planthopper resistance	
15900	NAC141	ONAC141	NAC DOMAIN-CONTAINING PROTEIN 141	NAC domain-containing protein 141	NAC DOMAIN-CONTAINING PROTEIN 141		1	LOC_Os01g47670.		Os01g0667000	LOC_Os01g47670.1						
15901	NAC142	ONAC142	NAC DOMAIN-CONTAINING PROTEIN 142	NAC domain-containing protein 142	NAC DOMAIN-CONTAINING PROTEIN 142		3	LOC_Os03g61650.	 Other	Os03g0832000	LOC_Os03g61650.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15902	NAC143	ONAC143	NAC DOMAIN-CONTAINING PROTEIN 143	NAC domain-containing protein 143	NAC DOMAIN-CONTAINING PROTEIN 143		5	LOC_Os05g26026.		Os05g0326800	LOC_Os05g26026.1						
15903	NAC144	ONAC144	NAC DOMAIN-CONTAINING PROTEIN 144	NAC domain-containing protein 144	NAC DOMAIN-CONTAINING PROTEIN 144		5	LOC_Os05g26049.		Os05g0326500	LOC_Os05g26049.1						
15904	NAC145	ONAC145	NAC DOMAIN-CONTAINING PROTEIN 145	NAC domain-containing protein 145	NAC DOMAIN-CONTAINING PROTEIN 145		5	LOC_Os05g27749.		Os05g0348500	LOC_Os05g27749.1						
15905	NAC146	ONAC146	NAC DOMAIN-CONTAINING PROTEIN 146	NAC domain-containing protein 146	NAC DOMAIN-CONTAINING PROTEIN 146		5	LOC_Os05g28129 (not found in MSU Rice Genome Annotation Project Release 7 data).									
15906	NAC147	ONAC147	NAC DOMAIN-CONTAINING PROTEIN 147	NAC domain-containing protein 147	NAC DOMAIN-CONTAINING PROTEIN 147		7	LOC_Os07g31410.			LOC_Os07g31410						
15907	NAC148	ONAC148	NAC DOMAIN-CONTAINING PROTEIN 148	NAC domain-containing protein 148	NAC DOMAIN-CONTAINING PROTEIN 148		10	LOC_Os10g27380.	 Other	Os10g0413900	LOC_Os10g27380.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
15908	NAC149	ONAC149	NAC DOMAIN-CONTAINING PROTEIN 149	NAC domain-containing protein 149	NAC DOMAIN-CONTAINING PROTEIN 149		11	LOC_Os11g04360.	 Other	Os11g0139066	LOC_Os11g04360.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0016787 - hydrolase activity, GO:0003677 - DNA binding		
15909	_	p-SINE1-r46	_	transposon p-SINE1-r46					 Other						GO:0032196 - transposition		
15910	_	p-SINE1-r55	_	transposon p-SINE1-r55				AB086076.	 Other						GO:0032196 - transposition		
15911	_	p-SINE1-r63	_	transposon p-SINE1-r63				AB086084.	 Other						GO:0032196 - transposition		
15912	_	p-SINE1-r68	_	transposon p-SINE1-r68				AB086088.	 Other						GO:0032196 - transposition		
15913	_	p-SINE1-r69	_	transposon p-SINE1-r69				AB086089.	 Other						GO:0032196 - transposition		
15914	_	p-SINE1-r70	_	transposon p-SINE1-r70				AB086090.	 Other						GO:0032196 - transposition		
15915	_	p-SINE1-r72	_	transposon p-SINE1-r72				AB086091.	 Other						GO:0032196 - transposition		
15916	_	p-SINE1-r217	_	transposon p-SINE1-r217					 Other						GO:0032196 - transposition		
15917	_	p-SINE1-r509	_	transposon p-SINE1-r509					 Other						GO:0032196 - transposition		
15918	_	p-SINE1-r601	_	transposon p-SINE1-r601				AB088070 (Oryza barthii).	 Other						GO:0032196 - transposition		
15919	_	p-SINE1-r605	_	transposon p-SINE1-r605				AB088071 (Oryza barthii).	 Other						GO:0032196 - transposition		
15920	_	p-SINE1-r606	_	transposon p-SINE1-r606				AB088072 (Oryza barthii).	 Other						GO:0032196 - transposition		
15921	_	p-SINE1-r607	_	transposon p-SINE1-r607				AB088073 (Oryza barthii).	 Other						GO:0032196 - transposition		
15922	_	p-SINE1-r701	_	transposon p-SINE1-r701				AB088074 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15923	_	p-SINE1-r702	_	transposon p-SINE1-r702				AB088075 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15924	_	p-SINE1-r703	_	transposon p-SINE1-r703				AB088076 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15925	_	p-SINE1-r705	_	transposon p-SINE1-r705				AB088077 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15926	_	p-SINE1-r706	_	transposon p-SINE1-r706				AB088078 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15927	_	p-SINE1-r707	_	transposon p-SINE1-r707				AB088079 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15928	_	p-SINE1-r708	_	transposon p-SINE1-r708				AB088080 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15929	_	p-SINE1-r709	_	transposon p-SINE1-r709				AB088081 (Oryza longistaminata).	 Other						GO:0032196 - transposition		
15930	_	p-SINE1-r801	_	transposon p-SINE1-r801				AB088122 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15931	_	p-SINE1-r803	_	transposon p-SINE1-r803				AB088123 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15932	_	p-SINE1-r804	_	transposon p-SINE1-r804				AB088124 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15933	_	p-SINE1-r806	_	transposon p-SINE1-r806				AB088125 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15934	_	p-SINE1-r807	_	transposon p-SINE1-r807				AB088126 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15935	_	p-SINE1-r808	_	transposon p-SINE1-r808				AB088127 (Oryza glumipatula).	 Other						GO:0032196 - transposition		
15936	_	p-SINE1-r901	_	transposon p-SINE1-r901				AB088128 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15937	_	p-SINE1-r902	_	transposon p-SINE1-r902				AB088129 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15938	_	p-SINE1-r903	_	transposon p-SINE1-r903				AB088130 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15939	_	p-SINE1-r904	_	transposon p-SINE1-r904				AB088131 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15940	_	p-SINE1-r905	_	transposon p-SINE1-r905				AB088132 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15941	_	p-SINE1-r906	_	transposon p-SINE1-r906				AB088133 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15942	_	p-SINE1-r907	_	transposon p-SINE1-r907				AB088134 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15943	_	p-SINE1-r908	_	transposon p-SINE1-r908				AB088135 (Oryza meridionalis).	 Other						GO:0032196 - transposition		
15944	_	rNBS8	_	NBS-LRR protein rNBS8			4	AF516886.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
15945	_	rNBS10	_	NBS-LRR protein rNBS10			11	AF516887.	 Tolerance and resistance - Disease resistance	Os11g0485900	LOC_Os11g29520.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15946	_	rNBS17	_	NBS-LRR protein rNBS17			4	AF516888.	 Tolerance and resistance - Disease resistance	Os04g0219600	LOC_Os04g14220.1, LOC_Os04g14220.2				GO:0043531 - ADP binding, GO:0006952 - defense response		
15947	_	rNBS36	_	NBS-LRR protein rNBS36			7	AF516890.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding		
15948	_	rNBS41	_	NBS-LRR protein rNBS41			2	AF516891.	 Tolerance and resistance - Disease resistance	Os02g0262800	LOC_Os02g16270.1, LOC_Os02g16270.2				GO:0043531 - ADP binding, GO:0006952 - defense response		
15949	_	rNBS44	_	NBS-LRR protein rNBS44			4	AF516893.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
15950	_	rNBS56	_	NBS-LRR protein rNBS56			4	AF516894.	 Tolerance and resistance - Disease resistance	Os04g0375300	LOC_Os04g30660.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
15951	_	rNBS78	_	NBS-LRR protein rNBS78			5	AF516895.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response		
15952	_	p-SINE1-r210	_	transposon p-SINE1-r210				AB086069.	 Other						GO:0032196 - transposition		
15953	_	p-SINE1-r215	_	transposon p-SINE1-r215				AB086070.	 Other						GO:0032196 - transposition		
15954	_	p-SINE1-r216	_	transposon p-SINE1-r216				AB086071.	 Other						GO:0032196 - transposition		
15955	_	p-SINE1-r50	_	transposon p-SINE1-r50					 Other						GO:0032196 - transposition		
15956	_	p-SINE1-r501	_	transposon p-SINE1-r501					 Other						GO:0032196 - transposition		
15957	_	p-SINE1-r503	_	transposon p-SINE1-r503					 Other						GO:0032196 - transposition		
15958	_	p-SINE1-r504	_	transposon p-SINE1-r504					 Other						GO:0032196 - transposition		
15959	_	p-SINE1-r505	_	transposon p-SINE1-r505					 Other						GO:0032196 - transposition		
15960	_	p-SINE1-r506	_	transposon p-SINE1-r506					 Other						GO:0032196 - transposition		
15961	_	p-SINE1-r507	_	transposon p-SINE1-r507					 Other						GO:0032196 - transposition		
15962	_	p-SINE1-r51	_	transposon p-SINE1-r51				AB086072.	 Other						GO:0032196 - transposition		
15963	_	p-SINE1-r52	_	transposon p-SINE1-r52				AB086073.	 Other						GO:0032196 - transposition		
15964	_	p-SINE1-r53	_	transposon p-SINE1-r53				AB086074.	 Other						GO:0032196 - transposition		
15965	_	p-SINE1-r54	_	transposon p-SINE1-r54				AB086075.	 Other						GO:0032196 - transposition		
15966	_	p-SINE1-r56	_	transposon p-SINE1-r56				AB086077.	 Other						GO:0032196 - transposition		
15967	_	p-SINE1-r57	_	transposon p-SINE1-r57				AB086078.	 Other						GO:0032196 - transposition		
15968	_	p-SINE1-r58	_	transposon p-SINE1-r58				AB086079.	 Other						GO:0032196 - transposition		
15969	_	p-SINE1-r59	_	transposon p-SINE1-r59				AB086080.	 Other						GO:0032196 - transposition		
15970	_	p-SINE1-r60	_	transposon p-SINE1-r60				AB086081.	 Other						GO:0032196 - transposition		
15971	_	p-SINE1-r61	_	transposon p-SINE1-r61				AB086082.	 Other						GO:0032196 - transposition		
15972	_	p-SINE1-r62	_	transposon p-SINE1-r62				AB086083.	 Other						GO:0032196 - transposition		
15973	_	p-SINE1-r64	_	transposon p-SINE1-r64				AB086085.	 Other						GO:0032196 - transposition		
15974	_	p-SINE1-r65	_	transposon p-SINE1-r65				AB086086.	 Other						GO:0032196 - transposition		
15975	_	p-SINE1-r66	_	transposon p-SINE1-r66				AB086087.	 Other						GO:0032196 - transposition		
15976	MYB19 	R2R3-MYB, OsMYB19, Os2R_MYB16, 2R_MYB16	MYB TRANSCRIPTION FACTOR 19	MYB domain protein, R2R3-MYB Transcription Factor 16	MYB TRANSCRIPTION FACTOR 19		1	AJ575220. AY459345, AP003242.	 Tolerance and resistance - Stress tolerance,  Seed,  Other	Os01g0850400	LOC_Os01g63160.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation	TO:0000620 - embryo development trait, TO:0000653 - seed development trait, TO:0000276 - drought tolerance	
15977	_		_	MYB domain protein			3	AJ575221.	 Other,  Seed	Os03g0425800	LOC_Os03g31230.1, LOC_Os03g31230.2				GO:0003677 - DNA binding, GO:0003682 - chromatin binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15978	2R_MYB23	Os2R_MYB23	R2R3-MYB TRANSCRIPTION FACTOR 23	MYB domain protein, R2R3-MYB Transcription Factor 23	R2R3-MYB TRANSCRIPTION FACTOR 23		2	AJ575222.	 Other,  Seed,  Tolerance and resistance - Stress tolerance	Os02g0271900	LOC_Os02g17190.1				GO:0003677 - DNA binding, GO:0046686 - response to cadmium ion, GO:0003682 - chromatin binding, GO:0009414 - response to water deprivation	TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000620 - embryo development trait	
15979	_		_	homeodomain protein			2	AJ575223.	 Seed,  Other	Os02g0147800	LOC_Os02g05450.1				GO:0043565 - sequence-specific DNA binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0003700 - transcription factor activity, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15980	_	OsFbox304, Os_F0494, OsFBX192, FBX192	_	F-box protein 304, F-box-type E3 ubiquitin ligase X192			6	AJ575242. LOC_Os06g11630. Os_F0494 in Hua et al. 2011.	 Other,  Seed	Os06g0219700	LOC_Os06g11630.1				GO:0010629 - negative regulation of gene expression, GO:0010608 - posttranscriptional regulation of gene expression, GO:0009737 - response to abscisic acid stimulus	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15981	_		_	BSD domain protein			3	AJ575244.	 Other,  Seed	Os03g0729900	LOC_Os03g52000.1					TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15983	_		_	clathrin assenbly Enth domain protein			4	AJ575225.	 Seed	Os04g0599900	LOC_Os04g51120.1, LOC_Os04g51120.3				GO:0009579 - thylakoid, GO:0006623 - protein targeting to vacuole, GO:0005884 - actin filament	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15984	_		_	VHS domain protein			1	AJ575226.	 Seed	Os01g0232400	LOC_Os01g13160.1				GO:0006886 - intracellular protein transport, GO:0016020 - membrane	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15985	_		_	VHS and GAT domain protein			1	AJ575227.	 Seed	Os01g0825700	LOC_Os01g61030.1				GO:0005886 - plasma membrane, GO:0005622 - intracellular, GO:0006886 - intracellular protein transport	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15986	NBR1	OsNBR1	NEXT TO BRCA1 GENE 1	Pbi and ZZ domain DBP protein		Osnbr1	2	AJ575228. GO: cargo receptor activity.	 Tolerance and resistance - Insect resistance,  Seed	Os02g0593700	LOC_Os02g38050.6, LOC_Os02g38050.5, LOC_Os02g38050.4, LOC_Os02g38050.3, LOC_Os02g38050.1, LOC_Os02g38050.2				GO:0002213 - defense response to insect, GO:0006914 - autophagy, GO:0005776 - autophagic vacuole, GO:0005634 - nucleus, GO:0010508 - positive regulation of autophagy, GO:0008270 - zinc ion binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait, TO:0000424 - brown planthopper resistance	
15987	_		_	Pbi and ZZ domain DBP protein			4	AJ575229.	 Seed	Os04g0476800	LOC_Os04g40090.1				GO:0008270 - zinc ion binding	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15988	_		_	DNA J domain protein			3	AJ575230.	 Seed	Os03g0111500	LOC_Os03g02080.1, LOC_Os03g02080.2					TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15989	_		_	RING-finger protein			7	AJ575231.	 Seed	Os07g0461600	LOC_Os07g27760.1, LOC_Os07g27760.2, LOC_Os07g27760.3, LOC_Os07g27760.4					TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15990	_		_	calcium-binding repeat protein			1	AJ575232.	 Seed	Os01g0813900	LOC_Os01g59850.1				GO:0008270 - zinc ion binding, GO:0008060 - ARF GTPase activator activity, GO:0032312 - regulation of ARF GTPase activity	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15991	_		_	calcium-binding repeat protein			2	AJ575233.	 Seed	Os02g0208900	LOC_Os02g11820.1, LOC_Os02g11820.2, LOC_Os02g11820.3				GO:0032312 - regulation of ARF GTPase activity, GO:0008060 - ARF GTPase activator activity, GO:0008270 - zinc ion binding	TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15992	_		_	RNA-binding domain protein			8	AJ575234.	 Seed	Os08g0412200	LOC_Os08g31810.1, LOC_Os08g31810.2, LOC_Os08g31810.3				GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005730 - nucleolus	TO:0000620 - embryo development trait, TO:0000653 - seed development trait	
15993	_		_	Finger zinc testis metal-binding protein			1	AJ575235.	 Seed	Os01g0663800	LOC_Os01g47430.1, LOC_Os01g47430.2					TO:0000653 - seed development trait, TO:0000620 - embryo development trait	
15994	_	OsMyoXIA	_	Myosin XIA, Myosin class XI A			1	AP003410: 137196-116065 (myosin pseudogene). 									
15995	_	OSMYOXIC, OsMyoXIC	_	myosin XIC, Myosin class XI C			2	AP004140: 35317-52347.									
15996	_	OSMYOXID, OsMyoXID	_	myosin XID, Myosin class XI D			2	AP005771: 26013-57487 (OSJNBa0069D13.10).							GO:0003774 - motor activity, GO:0016459 - myosin complex, GO:0005524 - ATP binding		
15997	_	OSMYOXIF, OsMyoXIF	_	myosin XIF, Myosin class XI F			3	AC092779: 27008-40325.									
15998	_	OSMYOXIG, OsMyoXIG	_	myosin XIG, Myosin class XI G			3	AC092263: 78631-95406 (OSJNBa0033P04.23).							GO:0016459 - myosin complex, GO:0048767 - root hair elongation, GO:0005524 - ATP binding, GO:0003774 - motor activity		
15999	_	OSMYOXIH, OsMyoXIH	_	myosin XIH, Myosin class XI H			5	AC097112: 124399-142659 (OJ1741_B01.17).							GO:0016459 - myosin complex, GO:0005524 - ATP binding, GO:0003774 - motor activity		
16000	_	OSMYOXI-I, OsMyoXI-I	_	myosin XI-I, Myosin class XI I			5	AC104273: 70015-56697.									
16001	_	OSMYOXIJ, OsMyoXIJ	_	myosin XIJ, Myosin class XI J			6	AP004728: 89706-110587.									
16002	_	OSMYOXIK, OsMyoXIK	_	myosin XIK, Myosin class XI K			10	AAM44879.							GO:0016459 - myosin complex, GO:0005524 - ATP binding, GO:0003774 - motor activity		
16003	_	OSMYOXIL, OsMyoXIL	_	myosin XIL, Myosin class XI L			10	AAK98715.							GO:0003774 - motor activity, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005524 - ATP binding, GO:0016459 - myosin complex		
16004	_	OSMYOVIIIB, OsMyoVIIIB	_	myosin VIIIB, Myosin class VIII B			10	AAL31066.		Os10g0488800	LOC_Os10g34710.1				GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0016459 - myosin complex, GO:0003774 - motor activity, GO:0005524 - ATP binding		
16005	RPS7	rps7	RIBOSOMAL PROTEIN S7	ribosomal protein S7, chloroplast 30S ribosomal protein S7	RIBOSOMAL PROTEIN S7			AU070286, AU173957.	 Other,  Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16006	_	SUI1	_	protein translation factor SUI1			5	AU161922, AU161923.	 Other,  Tolerance and resistance - Stress tolerance	Os05g0498400	LOC_Os05g41900.1, LOC_Os05g41900.2, LOC_Os05g41900.3, LOC_Os05g41900.4				GO:0003743 - translation initiation factor activity	TO:0000432 - temperature response trait	
16007	P0C	OsP0C	RIBOSOMAL PROTEIN P0C	60S acidic ribosomal protein P0, ribosomal protein P0C	RIBOSOMAL PROTEIN P0C	osp0c	12	AU062501, AU092216, AU062621, AU108592.	 Other,  Tolerance and resistance - Stress tolerance	Os12g0133050	LOC_Os12g03880.1				GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0042254 - ribosome biogenesis, GO:0048046 - apoplast, GO:0009507 - chloroplast, GO:0022626 - cytosolic ribosome, GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009506 - plasmodesma, GO:0005507 - copper ion binding, GO:0005737 - cytoplasm	TO:0000432 - temperature response trait	
16008	RPL18	rpl18	RIBOSOMAL PROTEIN L18	ribosomal protein L18, 60S ribosomal protein L18	RIBOSOMAL PROTEIN L18		5	AU164919, AU031524.	 Tolerance and resistance - Stress tolerance	Os05g0155100	LOC_Os05g06310.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0009506 - plasmodesma, GO:0006412 - translation, GO:0005773 - vacuole, GO:0003735 - structural constituent of ribosome, GO:0016020 - membrane	TO:0000432 - temperature response trait	
16009	RPL2	rpl2, rpl8, RPL8, OsRPL2, OsRPL8	RIBOSOMAL PROTEIN L2	ribosomal protein L2, 60S ribosomal protein L2, ribosomal protein L8, 60S ribosomal protein L8	RIBOSOMAL PROTEIN L2		12	LOC_Os12g38000.1 AU095410, AU031615. D16033. RPL8 in Moin et al. 2016.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os12g0567700	LOC_Os12g38000.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0005730 - nucleolus, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0009507 - chloroplast, GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000432 - temperature response trait	PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0020032 - plumule , PO:0009006 - shoot system , PO:0009005 - root 
16010	RPL7	rpl7	RIBOSOMAL PROTEIN L7	ribosomal protein L7, 60S ribosomal protein L7	RIBOSOMAL PROTEIN L7		4	AU164554. D29720.	 Tolerance and resistance - Stress tolerance	Os04g0605900	LOC_Os04g51630.1, LOC_Os04g51630.2, LOC_Os04g51630.3				GO:0005840 - ribosome	TO:0000432 - temperature response trait	
16011	RPL18A	rpl18a, RPL18a, OsRPL18a	RIBOSOMAL PROTEIN L18A	ribosomal protein L18a	RIBOSOMAL PROTEIN L18A		5	D22132.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0565000	LOC_Os05g49030.1				GO:0016020 - membrane, GO:0022625 - cytosolic large ribosomal subunit, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009506 - plasmodesma, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation	TO:0000432 - temperature response trait, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009006 - shoot system , PO:0009005 - root , PO:0009089 - endosperm , PO:0025034 - leaf 
16012	RPS4	rps4, RPS4a	RIBOSOMAL PROTEIN S4	ribosomal protein S4, ribosomal protein S4 type I, ribosomal protein S4a, ribosomal protein small subunit 4a	RIBOSOMAL PROTEIN S4		5	LOC_Os05g30530. C19518, C99258. RPS4a in Saha et al. 2017, Moin et al. 2017.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0368300	LOC_Os05g30530.1				GO:0042542 - response to hydrogen peroxide, GO:0003735 - structural constituent of ribosome, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0003723 - RNA binding, GO:0042742 - defense response to bacterium	TO:0002657 - oxidative stress, TO:0000432 - temperature response trait, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
16013	HMGB710	OsHMGB710, OsNFD101, NFD101	HIGH MOBILITY GROUP PROTEIN B710	HMG protein, high-mobility group protein, nucleasome/chromatin assembly factor D protein of HMG protein family, nucleasome/chromatin assembly factor D, nucleosome/chromatin assembly factor D protein 101	HIGH MOBILITY GROUP PROTEIN B710		9	D47590. D22603. D29711. he most promising candidate gene of qCIR9.1 (QTL associated with anther culturability). PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os09g0551600	LOC_Os09g37910.1				GO:0003677 - DNA binding, GO:0009566 - fertilization, GO:0005634 - nucleus	TO:0000432 - temperature response trait	PO:0009009 - plant embryo , PO:0009066 - anther , PO:0009030 - carpel , PO:0009049 - inflorescence , PO:0005052 - plant callus 
16014	_	VLN2, OsVLN2, Os VLN2	_	villin 3, VILLIN2, VILLIN 2		vln2	3	AU166286. VLN2 in Wu et al. 2015 and Dedecker et al. 2016. GO:0060918: auxin transport. LOC_Os03g24220. APC regulator. APC regulatory subunit. 	 Tolerance and resistance - Stress tolerance	Os03g0356700	LOC_Os03g24220.1, LOC_Os03g24220.2				GO:0051014 - actin filament severing, GO:0051017 - actin filament bundle formation, GO:0005884 - actin filament, GO:0032970 - regulation of actin filament-based process, GO:0032956 - regulation of actin cytoskeleton organization, GO:0016049 - cell growth, GO:0009630 - gravitropism	TO:0000432 - temperature response trait, TO:0002672 - auxin content, TO:0002693 - gravity response trait	
16016	VSR4	OsVSR4	VACUOLAR SORTING RECEPTOR 4	Vacuolar sorting receptor, vacuolar sorting receptor 4	VACUOLAR SORTING RECEPTOR 4		3	AU173952, AU057343.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0335300	LOC_Os03g21720.1				GO:0006896 - Golgi to vacuole transport, GO:0006623 - protein targeting to vacuole, GO:0005509 - calcium ion binding, GO:0009940 - amino-terminal vacuolar sorting propeptide binding, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum	TO:0000432 - temperature response trait	
16017	_		_	cysteine proteinase 1			2	C91690, AU029682.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0469600	LOC_Os02g27030.1				GO:0006970 - response to osmotic stress, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0008234 - cysteine-type peptidase activity, GO:0005773 - vacuole	TO:0000432 - temperature response trait	
16018	_		_	SEC61 alpha subunit			3	C26358, AU100706.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0213100	LOC_Os03g11440.1				GO:0016020 - membrane, GO:0015031 - protein transport	TO:0000432 - temperature response trait	
16019	_		_	dihydrofolate reductase			4	AU056351.	 Tolerance and resistance - Stress tolerance	Os04g0450100	LOC_Os04g37710.1					TO:0000432 - temperature response trait	
16020	XDH1	OsXDH1, OsSAC3, SAC3	SUGAR ACCUMULATION 3	Xanthine dehydrogenase, xanthine dehydrogenase 1, sugar accumulation 3	XANTHINE DEHYDROGENASE 1	ossac3	3	AU067858, AU067859. Q6AUV1.  OsR498G0306255700.01 in Xie et al. 2022. GO:1900056: negative regulation of leaf senescence. GO:0072593: reactive oxygen species metabolic process. GO:1903647: negative regulation of chlorophyll catabolic process. TO:0000975: grain width. PO:0030123: panicle inflorescence. GO:2000881: regulation of starch catabolic process.	 Vegetative organ - Leaf,  Biochemical character,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os03g0429800	LOC_Os03g31550.1, LOC_Os03g31550.2				GO:0005829 - cytosol, GO:0009416 - response to light stimulus, GO:0009408 - response to heat, GO:0046466 - membrane lipid catabolic process, GO:0045454 - cell redox homeostasis, GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence, GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity, GO:0015979 - photosynthesis, GO:0015994 - chlorophyll metabolic process, GO:0006807 - nitrogen compound metabolic process, GO:0009055 - electron carrier activity, GO:0050660 - FAD binding, GO:0005506 - iron ion binding, GO:0004854 - xanthine dehydrogenase activity, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046110 - xanthine metabolic process, GO:0042554 - superoxide anion generation, GO:0009414 - response to water deprivation, GO:0000302 - response to reactive oxygen species, GO:0005975 - carbohydrate metabolic process, GO:0005737 - cytoplasm, GO:0006163 - purine nucleotide metabolic process	TO:0000432 - temperature response trait, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent, TO:0000495 - chlorophyll content, TO:0000371 - yield trait, TO:0000734 - grain length, TO:0000460 - light intensity sensitivity, TO:0000333 - sugar content, TO:0000316 - photosynthetic ability, TO:0000328 - sucrose content, TO:0000696 - starch content, TO:0000259 - heat tolerance, TO:0000207 - plant height, TO:0000249 - leaf senescence	PO:0009047 - stem , PO:0009005 - root , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
16021	_		_	ATP synthase C chain				AU075867, AU075868.	 Biochemical character,  Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16022	_		_	ATP synthase delta chain			6	AU064654, AU094876.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0646500	LOC_Os06g43850.1				GO:0009507 - chloroplast, GO:0005753 - mitochondrial proton-transporting ATP synthase complex, GO:0015986 - ATP synthesis coupled proton transport, GO:0005886 - plasma membrane, GO:0050897 - cobalt ion binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0008270 - zinc ion binding	TO:0000432 - temperature response trait	
16023	_	NFR	_	cytochrome b5 reductase			1	D23879, AU031680.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0814900	LOC_Os01g59930.1, LOC_Os01g59930.2				GO:0022900 - electron transport chain, GO:0005783 - endoplasmic reticulum, GO:0009505 - plant-type cell wall, GO:0005886 - plasma membrane, GO:0016491 - oxidoreductase activity	TO:0000432 - temperature response trait	
16024	_		_	Cyt-P450 monooxygenase				AU173996.	 Tolerance and resistance - Stress tolerance,  Biochemical character							TO:0000432 - temperature response trait	
16025	LCD2	OsLCD2, OsCS1, CS1	L-CYS DESULFHYDRASE 2	isopenicillin N epimerase homolog, L-Cys desulfhydrase 2, cysteine synthase 1	L-CYS DESULFHYDRASE 2		1	AU173240, AU173241. GO:1990170: stress response to cadmium ion. GO:1903788: positive regulation of glutathione biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0290600	LOC_Os01g18660.1				GO:0046686 - response to cadmium ion, GO:0030170 - pyridoxal phosphate binding, GO:0019344 - cysteine biosynthetic process, GO:0006750 - glutathione biosynthetic process, GO:0003824 - catalytic activity, GO:0005634 - nucleus	TO:0000432 - temperature response trait	
16026	ACBP1	OsACBP1	ACYL-COA-BINDING PROTEIN 1	Acyl-CoA-binding protein, Acyl-CoA-binding protein 1	ACYL-COA-BINDING PROTEIN 1		8	AU174447. Q84SC3. resembles bovine ACBP.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0162800	LOC_Os08g06550.1				GO:0008289 - lipid binding, GO:0000062 - acyl-CoA binding, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0005829 - cytosol	TO:0000074 - blast disease, TO:0000432 - temperature response trait, TO:0000303 - cold tolerance	PO:0025034 - leaf 
16028	_		_	beta-ketoacyl synthase			2	C73655, AU108182.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0297200	LOC_Os02g19470.1					TO:0000432 - temperature response trait	
16029	_		_	bifunctional nuclease			1	D48949, AU097625.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0128200	LOC_Os01g03730.1				GO:0003676 - nucleic acid binding, GO:0006308 - DNA catabolic process, GO:0004519 - endonuclease activity	TO:0000432 - temperature response trait	
16030	_		_	beta-ketoacyl reductase			2	AU173217.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0597900	LOC_Os02g38440.1					TO:0000432 - temperature response trait	
16031	BETACA1	OsCA, CA, OsbetaCA1, betaCA1, CA1	BETA-CARBONIC ANHYDRASE 1	Carbonic anhydrase, beta-type carbonic anhydrase, beta-carbonic anhydrase	BETA-CARBONIC ANHYDRASE 1		1	AU056257, AU056258. U08404. BF889440. AB016283. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0639900	LOC_Os01g45274.1, LOC_Os01g45274.2, LOC_Os01g45274.3, LOC_Os01g45274.4				GO:0009817 - defense response to fungus, incompatible interaction, GO:0009570 - chloroplast stroma, GO:0009535 - chloroplast thylakoid membrane, GO:0009409 - response to cold, GO:0004089 - carbonate dehydratase activity, GO:0050832 - defense response to fungus, GO:0048046 - apoplast, GO:0042742 - defense response to bacterium, GO:0015976 - carbon utilization, GO:0010119 - regulation of stomatal movement, GO:0010037 - response to carbon dioxide, GO:0005829 - cytosol, GO:0009609 - response to symbiotic bacterium, GO:0005886 - plasma membrane, GO:0010319 - stromule, GO:0009408 - response to heat, GO:0008270 - zinc ion binding, GO:0009941 - chloroplast envelope, GO:0009414 - response to water deprivation	TO:0000316 - photosynthetic ability, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000522 - stomatal conductance, TO:0001015 - photosynthetic rate, TO:0000457 - total biomass yield, TO:0000552 - shoot dry weight, TO:0000571 - shoot fresh weight, TO:0000432 - temperature response trait, TO:0000520 - stomatal closure rate	PO:0000293 - guard cell 
16032	_		_	lipase			1	AU101109. Q5NAI4. GO:0071493: cellular response to UV-B.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0710700	LOC_Os01g51360.1, LOC_Os01g51360.2				GO:0016042 - lipid catabolic process, GO:0008970 - phospholipase A1 activity, GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0009650 - UV protection, GO:0004806 - triacylglycerol lipase activity	TO:0000432 - temperature response trait	
16033	ALDH11A3	OsALDH11A3, GAPN	ALDEHYDE DEHYDROGENASE 11A3	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, Aldehyde dehydrogenase 11A3	ALDEHYDE DEHYDROGENASE 11A3		8	LOC_Os08g34210. AU108817, C97061, D48732, AU032835.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0440800	LOC_Os08g34210.1, LOC_Os08g34210.2				GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, GO:0005737 - cytoplasm	TO:0000432 - temperature response trait	
16034	_		_	plant short chain slcohol dehydrogenase			7	C72731, AU165528.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0664400	LOC_Os07g46930.1				GO:0016491 - oxidoreductase activity	TO:0000432 - temperature response trait	
16035	_		_	glycine decarboxylase complex H-protein			2	C26203, AU100677.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0170100	LOC_Os02g07410.1, LOC_Os02g07410.2				GO:0005960 - glycine cleavage complex, GO:0005524 - ATP binding, GO:0019464 - glycine decarboxylation via glycine cleavage system	TO:0000432 - temperature response trait	
16036	_		_	Homo sapiens h-bcs1 (BCS1) mitochondrial protein homolog, OsAAA-ATPase1, AAA-ATPase1			3	C99346, AU101318. AAA-type ATPase.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0802500 	LOC_Os03g58790.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0005524 - ATP binding, GO:0009725 - response to hormone stimulus, GO:0005829 - cytosol, GO:0017111 - nucleoside-triphosphatase activity, GO:0009751 - response to salicylic acid stimulus, GO:0050832 - defense response to fungus	TO:0000432 - temperature response trait, TO:0000401 - plant growth hormone sensitivity, TO:0000074 - blast disease	
16037	_		_	CaM-like protein			3	C74259, AU091362.	 Tolerance and resistance - Stress tolerance	Os03g0769500	LOC_Os03g55960.1				GO:0005509 - calcium ion binding	TO:0000432 - temperature response trait	
16038	_	WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1	_	finger protein WZF1, DLN repressor 99, DLN motif protein 99, Zinc finger protein 1			3	D25079. HQ858838. BF889468. C2H2 transcription factor.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0764100	LOC_Os03g55540.1				GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0046872 - metal ion binding, GO:0030912 - response to deep water	TO:0000172 - jasmonic acid sensitivity, TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0000074 - blast disease	
16039	_		_	NAC-like protein, nascent polypeptide-associated complex alpha chain			3	C74114, AU091318. AY224519.	 Tolerance and resistance - Stress tolerance	Os03g0121700	LOC_Os03g02960.1					TO:0000432 - temperature response trait	
16040	_		_	RING finger-like protein			8	C71770, C98483.	 Tolerance and resistance - Stress tolerance	Os08g0387200	LOC_Os08g29760.1				GO:0016021 - integral to membrane	TO:0000432 - temperature response trait	
16041	_	OsRBX1b, RBX1b, OsRING441, RING441	_	RING-box protein, RING-BOX1b, RING-type E3 ubiquitin ligase 441			1	C74163, AU101400. XP_015618780.1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0106800	LOC_Os01g01700.1				GO:0008270 - zinc ion binding, GO:0019005 - SCF ubiquitin ligase complex, GO:0031463 - Cul3-RING ubiquitin ligase complex, GO:0009733 - response to auxin stimulus	TO:0000432 - temperature response trait	
16042	PH1	SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3, GRAS3, OsPH1, ph1, CIGR, OsCIGR	PLANT HEIGHT 1	Arabidopsis thaliana scarecrow-like 1, GRAS protein 3, chitin-inducible gibberellin-responsive gene	GRAS PROTEIN 3		1	AU057316, AU057317.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os01g0881500	LOC_Os01g65900.1				GO:0006351 - transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0009266 - response to temperature stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0048573 - photoperiodism, flowering, GO:0009739 - response to gibberellin stimulus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000040 - panicle length, TO:0000634 - node number, TO:0000145 - internode length, TO:0000207 - plant height, TO:0000255 - sheath blight disease resistance, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000432 - temperature response trait, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
16044	_		_	the large subunit of RNA polymerase II				AU166454, AU166455.	 Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16045	_		_	Arabidopsis thaliana ERD15 protein homolog			3	C72401, AU172487.	 Tolerance and resistance - Stress tolerance	Os03g0353400	LOC_Os03g23010.1, LOC_Os03g23010.2, LOC_Os03g23010.3, LOC_Os03g23010.4, LOC_Os03g23010.5					TO:0000432 - temperature response trait	
16046	_		_	pathogenesis-related protein			3	AU075857, AU075858.	 Tolerance and resistance - Stress tolerance							TO:0000432 - temperature response trait	
16047	_	NALP1	_	nuclear ankyrin like protein 1			10	AB110173.		Os10g0580700	LOC_Os10g43040.1						
16048	_	OsNMCP1a	_	nuclear matrix protein NMCP1a			2	AB110204.		Os02g0709900 	LOC_Os02g48010.1				GO:0005829 - cytosol, GO:0005652 - nuclear lamina, GO:0006997 - nucleus organization		
16049	AHP1	OsAHP1, OsAHL8, AHL8	_	AT-hook motif DNA-binding protein 8, AT-hook motif nuclear localized protein 8			4	AB110206. a probable HMG I/Y-type chromatin proteincontaining an AT-Hook motif.	 Tolerance and resistance - Stress tolerance	Os04g0589900	LOC_Os04g49990.1, LOC_Os04g49990.2				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
16050	_	OsSAD1, SAD1, OsSUN2, SUN2, OsSUN1, SUN1	_	SUN (Sad1/UNC-84) domain-containing protein 2, SUN domain-containing protein 2, SUN protein 2, SUN Domain Protein 1		Ossun1, Ossun1-1	5	AB110207. a homolog of human SAD1. a SUN protein associated with the nuclear envelope. OsSUN1 in Zhang et al. 2020.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os05g0270200	LOC_Os05g18770.1				GO:0006998 - nuclear envelope organization, GO:0051321 - meiotic cell cycle, GO:0043495 - protein anchor, GO:0045141 - meiotic telomere clustering, GO:0007129 - synapsis, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0005635 - nuclear envelope	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009089 - endosperm , PO:0000025 - root tip , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009072 - plant ovary , PO:0025060 - lamina , PO:0009005 - root 
16051	_	OsRH5	_	RNA helicase 5			7	AB110202. Q6YS30. a p68-like DEAD-box RNA helicase. LOC_Os07g20580.		Os07g0301200	LOC_Os07g20580.1				GO:0005829 - cytosol, GO:0008026 - ATP-dependent helicase activity, GO:0006364 - rRNA processing, GO:0005730 - nucleolus, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
16052	SCL30B	OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b	SC35-LIKE PROTEIN 30B	SC35-like protein 30b, SCL subfamily protein 30b	SC35-LIKE PROTEIN 30B	scl30	12	AB110200. an SC35-like splicing factor. Os-SCL30 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content. TO:0000975: grain width. GO:2000377: regulation of reactive oxygen species metabolic process.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os12g0572400	LOC_Os12g38420.1, LOC_Os12g38430.1				GO:0006979 - response to oxidative stress, GO:0042594 - response to starvation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0016607 - nuclear speck, GO:0000166 - nucleotide binding, GO:0009409 - response to cold, GO:0003676 - nucleic acid binding	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0000382 - 1000-seed weight, TO:0000221 - glume color, TO:0000487 - endosperm color, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000449 - grain yield per plant, TO:0000180 - spikelet fertility, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath 
16053	_		_	Chitinase			1	AB110201. a probable acidic endochitinase.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0687400	LOC_Os01g49320.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
16055	_	p-SINE2-r24	_	transposon p-SINE2-r24, retroposon p-SINE2-r24			6		 Other						GO:0032196 - transposition		
16056	_	p-SINE2-r2001	_	transposon p-SINE2-r2001, retroposon p-SINE2-r2001			11	AB206876.	 Other						GO:0032196 - transposition		
16057	_	p-SINE2-r2002	_	transposon p-SINE2-r2002, retroposon p-SINE2-r2002			1	AB206877.	 Other						GO:0032196 - transposition		
16058	_	p-SINE2-r2003	_	transposon p-SINE2-r2003, retroposon p-SINE2-r2003			3	AB206878.	 Other						GO:0032196 - transposition		
16059	_	p-SINE2-r2004	_	transposon p-SINE2-r2004, retroposon p-SINE2-r2004			10	AB206879.	 Other						GO:0032196 - transposition		
16060	_	p-SINE2-r2005	_	transposon p-SINE2-r2005, retroposon p-SINE2-r2005			4	AB206880.	 Other						GO:0032196 - transposition		
16061	_	p-SINE2-r2006	_	transposon p-SINE2-r2006, retroposon p-SINE2-r2006			10	AB206881.	 Other						GO:0032196 - transposition		
16062	_	p-SINE2-r2007	_	transposon p-SINE2-r2007, retroposon p-SINE2-r2007			3	AB206882.	 Other						GO:0032196 - transposition		
16063	_	p-SINE2-r2009	_	transposon p-SINE2-r2009, retroposon p-SINE2-r2009			10	AB206884.	 Other						GO:0032196 - transposition		
16064	_	p-SINE2-r2010	_	transposon p-SINE2-r2010, retroposon p-SINE2-r2010			10	AB206885.	 Other						GO:0032196 - transposition		
16065	_	p-SINE2-r2012	_	transposon p-SINE2-r2012, retroposon p-SINE2-r2012			11	AB206887.	 Other						GO:0032196 - transposition		
16066	_	p-SINE2-r2013	_	transposon p-SINE2-r2013, retroposon p-SINE2-r2013			12	AB206888.	 Other						GO:0032196 - transposition		
16067	_	p-SINE2-r2014	_	transposon p-SINE2-r2014, retroposon p-SINE2-r2014			6	AB206889.	 Other						GO:0032196 - transposition		
16068	_	p-SINE2-r2015	_	transposon p-SINE2-r2015, retroposon p-SINE2-r2015			8	AB206890.	 Other						GO:0032196 - transposition		
16069	_	p-SINE2-r2016	_	transposon p-SINE2-r2016, retroposon p-SINE2-r2016			9	AB206891.	 Other						GO:0032196 - transposition		
16070	_	p-SINE2-r2017	_	transposon p-SINE2-r2017, retroposon p-SINE2-r2017			8	AB206892.	 Other						GO:0032196 - transposition		
16071	_	p-SINE2-r2018	_	transposon p-SINE2-r2018, retroposon p-SINE2-r2018			12	AB206893.	 Other						GO:0032196 - transposition		
16072	_	p-SINE3-r3001	_	transposon p-SINE3-r3001, retroposon p-SINE3-r3001			11	AB206895. p-SINE3-r3001 is present in indica strain 93-11, but not in japonica strain Nipponbare.	 Other						GO:0032196 - transposition		
16073	_	p-SINE3-r3002	_	transposon p-SINE3-r3002, retroposon p-SINE3-r3002			3	AB206896.	 Other						GO:0032196 - transposition		
16074	_	p-SINE3-r3003	_	transposon p-SINE3-r3003, retroposon p-SINE3-r3003			5	AB206897.	 Other						GO:0032196 - transposition		
16075	_	p-SINE3-r3004	_	transposon p-SINE3-r3004, retroposon p-SINE3-r3004			12	AB206898.	 Other						GO:0032196 - transposition		
16076	_	p-SINE3-r3005	_	transposon p-SINE3-r3005, retroposon p-SINE3-r3005			1	AB206899.	 Other						GO:0032196 - transposition		
16077	_	p-SINE3-r3006	_	transposon p-SINE3-r3006, retroposon p-SINE3-r3006			6	AB206900.	 Other						GO:0032196 - transposition		
16078	_	p-SINE3-r3007	_	transposon p-SINE3-r3007, retroposon p-SINE3-r3007			7	AB206901.	 Other						GO:0032196 - transposition		
16079	_	p-SINE3-r3008	_	transposon p-SINE3-r3008, retroposon p-SINE3-r3008			8	AB206902.	 Other						GO:0032196 - transposition		
16080	_	p-SINE3-r3009	_	transposon p-SINE3-r3009, retroposon p-SINE3-r3009			8	AB206903.	 Other						GO:0032196 - transposition		
16081	_	p-SINE3-r3010	_	transposon p-SINE3-r3010, retroposon p-SINE3-r3010			6	AB206904.	 Other						GO:0032196 - transposition		
16082	_	p-SINE3-r3011	_	transposon p-SINE3-r3011, retroposon p-SINE3-r3011			5	AB206905.	 Other						GO:0032196 - transposition		
16083	_	p-SINE3-r3012	_	transposon p-SINE3-r3012, retroposon p-SINE3-r3012			5	AB206906.	 Other						GO:0032196 - transposition		
16084	_	p-SINE3-r3013	_	transposon p-SINE3-r3013, retroposon p-SINE3-r3013			5	AB206907.	 Other						GO:0032196 - transposition		
16085	_	p-SINE3-r3014	_	transposon p-SINE3-r3014, retroposon p-SINE3-r3014			5	AB206908.	 Other						GO:0032196 - transposition		
16086	_	p-SINE3-r3015	_	transposon p-SINE3-r3015, retroposon p-SINE3-r3015			3	AB206909.	 Other						GO:0032196 - transposition		
16087	_	p-SINE3-r3016A	_	transposon p-SINE3-r3016A, retroposon p-SINE3-r3016A			5	AB206910.	 Other						GO:0032196 - transposition		
16088	_	p-SINE3-r3016B	_	transposon p-SINE3-r3016B, retroposon p-SINE3-r3016B			5	AB206910.	 Other						GO:0032196 - transposition		
16089	_	p-SINE3-r3017	_	transposon p-SINE3-r3017, retroposon p-SINE3-r3017			3	AB206911.	 Other						GO:0032196 - transposition		
16090	_	p-SINE3-r3018	_	transposon p-SINE3-r3018, retroposon p-SINE3-r3018			12	AB206912.	 Other						GO:0032196 - transposition		
16091	_	p-SINE3-r3019	_	transposon p-SINE3-r3019, retroposon p-SINE3-r3019			1	AB206913.	 Other						GO:0032196 - transposition		
16092	_	p-SINE3-r3020	_	transposon p-SINE3-r3020, retroposon p-SINE3-r3020			6	AB206914.	 Other						GO:0032196 - transposition		
16093	_	p-SINE3-r3021	_	transposon p-SINE3-r3021, retroposon p-SINE3-r3021			1	AB206915.	 Other						GO:0032196 - transposition		
16094	_	p-SINE3-r3022	_	transposon p-SINE3-r3022, retroposon p-SINE3-r3022			1	AB206916.	 Other						GO:0032196 - transposition		
16095	_	p-SINE3-r3023	_	transposon p-SINE3-r3023, retroposon p-SINE3-r3023			7	AB206917.	 Other						GO:0032196 - transposition		
16096	_	p-SINE3-r3024	_	transposon p-SINE3-r3024, retroposon p-SINE3-r3024			12	AB206918.	 Other						GO:0032196 - transposition		
16097	_		_	6-phosphogluconolactonase			9	Q69NG5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0529100	LOC_Os09g35970.1				GO:0006098 - pentose-phosphate shunt, GO:0009507 - chloroplast, GO:0017057 - 6-phosphogluconolactonase activity	TO:0000432 - temperature response trait	
16098	_		_	adenylate kinase			3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0130400	LOC_Os03g03820.1				GO:0048367 - shoot development, GO:0009570 - chloroplast stroma, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0008652 - cellular amino acid biosynthetic process, GO:0004017 - adenylate kinase activity, GO:0048364 - root development	TO:0000432 - temperature response trait	
16099	MDHAR4	OsMDAR4, MDAR4, OsMDHAR4	MONODEHYDROASCORBATE REDUCTASE 4	monodehydroascorbate reductase 4	MONODEHYDROASCORBATE REDUCTASE 4		8	membrane-bound peroxisomal isoform.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0557600	LOC_Os08g44340.1				GO:0005829 - cytosol, GO:0016656 - monodehydroascorbate reductase (NADH) activity, GO:0016491 - oxidoreductase activity, GO:0070482 - response to oxygen levels, GO:0045454 - cell redox homeostasis, GO:0050660 - FAD binding	TO:0000015 - oxygen sensitivity, TO:0000432 - temperature response trait	
16100	_	NIP	_	nitrate-induced NOI protein, nitrate-induced protein			6	DQ285630, DQ352453, DQ454158.									
16101	_	Nbs1-Pi9, Nbs1-Pi2, Nbs1-NPB	_				6	a NBS-LRR type R protein. DQ285630, DQ352453, DQ454158. Pi2/9 homolog. LOC_Os06g17880.	 Tolerance and resistance - Disease resistance	Os06g0286500	LOC_Os06g17880.1				GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16102	_	Nbs3-Pi9	_				6	a NBS-LRR type R protein. DQ285630.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16103	_	Nbs2-Pi9, Pi9, Nbs2-Pi2, Nbs2-NPB	_				6	a NBS-LRR type R protein. DQ285630, DQ352453, DQ454158 (pseudogene).	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000074 - blast disease	
16104	_	Nbs4-Pi9, Nbs3-Pi2	_				6	a NBS-LRR type R pseudogene. DQ285630, DQ352453.									
16105	_	Nbs5-Pi9, Nbs4-Pi2	_				6	a NBS-LRR type R protein. DQ285630, DQ352453.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0043531 - ADP binding	TO:0000074 - blast disease	
16106	_	Nbs6-Pi9	_				6	a NBS-LRR type R protein. DQ285630.	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16107	_	Nbs7-75, Nbs7-Pi2, Nbs5-NPB	_				6	a NBS-LRR type R protein. DQ454157, DQ352453, DQ454158 (pseudogene).	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16108	_	Nbs9-75, Nbs9-Pi2, Nbs7-NPB	_				6	a NBS-LRR type R protein. DQ454157, DQ352453 (pseudogene), DQ454158 (pseudogene).	 Tolerance and resistance - Disease resistance						GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000074 - blast disease	
16109	_	Nbs5-Pi2, Nbs3-NPB	_				6	a NBS-LRR type R pseudogene. DQ352453, DQ454158.									
16110	_	Nbs6-Pi2, Nbs4-NPB	_				6	a NBS-LRR type R pseudogene. DQ352453, DQ454158.									
16111	_	Nbs8-75, Nbs8-Pi2, Nbs6-NPB	_				6	a NBS-LRR type R pseudogene. DQ454157, DQ352453, DQ454158.									
16112	SOBIR1	PK, OsSOBIR1	SUPPRESSOR OF BIR1-1	protein kinase	SUPPRESSOR OF BIR1-1		6	DQ352453, DQ454158. GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance	Os06g0288100	LOC_Os06g18000.1				GO:0060862 - negative regulation of floral organ abscission, GO:0005886 - plasma membrane, GO:0051607 - defense response to virus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0031349 - positive regulation of defense response, GO:0010942 - positive regulation of cell death	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	
16113	_	p-SINE1-r401	_	transposon p-SINE1-r401				AB201718 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16114	_	p-SINE1-r402	_	transposon p-SINE1-r402				AB201719 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16115	_	p-SINE1-r403	_	transposon p-SINE1-r403				AB201720 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16116	_	p-SINE1-r404	_	transposon p-SINE1-r404				AB201721 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16117	_	p-SINE1-r405	_	transposon p-SINE1-r405				AB201722 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16118	_	p-SINE1-r406	_	transposon p-SINE1-r406				AB201723 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16119	_	p-SINE1-r411	_	transposon p-SINE1-r411				AB201724 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16120	_	p-SINE1-r412	_	transposon p-SINE1-r412				AB201725 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16121	_	p-SINE1-r413	_	transposon p-SINE1-r413				AB201726 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16122	_	p-SINE1-r414	_	transposon p-SINE1-r414				AB201727 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16123	_	p-SINE1-r421	_	transposon p-SINE1-r421				AB201728 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16124	_	p-SINE1-r422	_	transposon p-SINE1-r422				AB201729 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16125	_	p-SINE1-r423	_	transposon p-SINE1-r423				AB201730 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16126	_	p-SINE1-r431	_	transposon p-SINE1-r431				AB201731 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16127	_	p-SINE1-r432	_	transposon p-SINE1-r432				AB201732 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16128	_	p-SINE1-r433	_	transposon p-SINE1-r433				AB201733 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16129	_	p-SINE1-r441	_	transposon p-SINE1-r441				AB201734 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16130	_	p-SINE1-r442	_	transposon p-SINE1-r442				AB201735 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16131	_	p-SINE1-r443	_	transposon p-SINE1-r443				AB201736 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16132	_	p-SINE1-r444	_	transposon p-SINE1-r444				AB201737 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16133	_	p-SINE1-r445	_	transposon p-SINE1-r445				AB201738 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16134	_	p-SINE1-r446	_	transposon p-SINE1-r446				AB201739 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16135	_	p-SINE1-r447	_	transposon p-SINE1-r447				AB201740 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16136	_	p-SINE1-r448	_	transposon p-SINE1-r448				AB201741 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16137	_	p-SINE1-r449	_	transposon p-SINE1-r449				AB201742 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16138	_	p-SINE1-r450	_	transposon p-SINE1-r450				AB201743 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16139	_	p-SINE1-r451	_	transposon p-SINE1-r451				AB201744 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16140	_	p-SINE1-r452	_	transposon p-SINE1-r452				AB201745 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16141	_	p-SINE1-r510	_	transposon p-SINE1-r510					 Other						GO:0032196 - transposition		
16142	GRAN1	Gran1	GYPSY TYPE RETROTRANSPOSON GRAN1	Ty3/gypsy LTR retrotransposon Gran1, Ty-3-gypsy retrotransposon Gran1					 Other						GO:0032196 - transposition		
16143	GRAN2	Gran2	GYPSY TYPE RETROTRANSPOSON GRAN2	Ty3/gypsy LTR retrotransposon Gran2, Ty-3-gypsy retrotransposon Gran2				EF187427.	 Other						GO:0032196 - transposition		
16144	GRAN3	Gran3	GYPSY TYPE RETROTRANSPOSON GRAN3	Ty3/gypsy LTR retrotransposon Gran3, Ty-3-gypsy retrotransposon Gran3				EF187429.	 Other						GO:0032196 - transposition		
16145	GRAN4	Gran4	GYPSY TYPE RETROTRANSPOSON GRAN4	Ty3/gypsy LTR retrotransposon Gran4, Ty-3-gypsy retrotransposon Gran4					 Other						GO:0032196 - transposition		
16146	CASSANDRA	Cassandra	RETROTRANSPOSON CASSANDRA	Cassandra retrotransposon, retrotransposon Cassandra				a group of TRIMs (terminal-repeat retrotransposons in miniature). HM481419 (O. glaberrima), HM481419 (O. minuta).	 Other						GO:0032196 - transposition		
16147	_		_	5S RNA, Cassandra 5S RNA				5S RNA sequence in Cassandra retrotransposon.									
16148	_	OsSN1-1	_	Oryza sativa SINE1-1, retrotransposon OsSN1-1				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16149	_	OsSN1-2	_	Oryza sativa SINE1-2, retrotransposon OsSN1-2				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16150	_	OsSN1-6	_	Oryza sativa SINE1-6, retrotransposon OsSN1-6				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16151	_	OsSN1-10	_	Oryza sativa SINE1-10, retrotransposon OsSN1-10				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16152	_	OsSN1-12	_	Oryza sativa SINE1-12, retrotransposon OsSN1-12				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16153	_	OsSN1-13	_	Oryza sativa SINE1-13, retrotransposon OsSN1-13				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16154	_	OsSN1-25	_	Oryza sativa SINE1-25, retrotransposon OsSN1-25				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16155	_	OsSN1-27	_	Oryza sativa SINE1-27, retrotransposon OsSN1-27				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16156	_	OsSN1-37	_	Oryza sativa SINE1-37, retrotransposon OsSN1-37				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16157	_	OsSN1-51	_	Oryza sativa SINE1-51, retrotransposon OsSN1-51				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16158	_	OsSN1-61	_	Oryza sativa SINE1-61, retrotransposon OsSN1-61				AB427154 (OsSN1 consensus sequence).	 Other						GO:0032196 - transposition		
16159	_	OsSN2-1	_	Oryza sativa SINE2-1, retrotransposon OsSN2-1				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16160	_	OsSN2-2	_	Oryza sativa SINE2-2, retrotransposon OsSN2-2				AB427155 (OsSN2 consensus sequence). AB427158 (O. barthii SINE:OsSN2-2 DNA).	 Other						GO:0032196 - transposition		
16161	_	OsSN2-7	_	Oryza sativa SINE2-7, retrotransposon OsSN2-7				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16162	_	OsSN2-12	_	Oryza sativa SINE2-12, retrotransposon OsSN2-12				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16163	_	OsSN2-14	_	Oryza sativa SINE2-14, retrotransposon OsSN2-14				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16164	_	OsSN2-30	_	Oryza sativa SINE2-30, retrotransposon OsSN2-30				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16165	_	OsSN2-50	_	Oryza sativa SINE2-50, retrotransposon OsSN2-50				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16166	_	OsSN2-8	_	Oryza sativa SINE2-8, retrotransposon OsSN2-8				AB427155 (OsSN2 consensus sequence).	 Other						GO:0032196 - transposition		
16167	_	OsSN3-1	_	Oryza sativa SINE3-1, retrotransposon OsSN3-1				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16168	_	OsSN3-30	_	Oryza sativa SINE3-30, retrotransposon OsSN3-30				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16169	_	OsSN3-42	_	Oryza sativa SINE3-42, retrotransposon OsSN3-42				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16170	_	OsSN3-59	_	Oryza sativa SINE3-59, retrotransposon OsSN3-59				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16171	_	OsSN3-69	_	Oryza sativa SINE3-69, retrotransposon OsSN3-69				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16172	_	OsSN3-76	_	Oryza sativa SINE3-76, retrotransposon OsSN3-76				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16173	_	OsSN3-80	_	Oryza sativa SINE3-80, retrotransposon OsSN3-80				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16174	_	OsSN3-81	_	Oryza sativa SINE3-81, retrotransposon OsSN3-81				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16175	_	OsSN3-89	_	Oryza sativa SINE3-89, retrotransposon OsSN3-89				AB427156 (OsSN3 consensus sequence).	 Other						GO:0032196 - transposition		
16176	TAS3A1	TAS3a1, OsTAS3a1, OsTAS3a, TAS3a	TRANS-ACTING siRNA3A1	TRANS-ACTING siRNA3a1		tas3a-1, tas3a-2	3	EU293143. GQ420188-GQ420228, HM140145, HM140146 (O. sativa, O. rufipogon, O. barthii). OsTAS3a in Luo et al. 2021, Gu et al. 2023.	 Other	Os03g0314750					GO:0016246 - RNA interference		
16177	TAS3B1	TAS3b1, OsTAS3b1, OsTAS3a, TAS3a, OsTAS3b, TAS3b	TRANS-ACTING siRNA3B1	TRANS-ACTING siRNA3b1, Trans-Acting Short RNA precursor 3a		tas3b-1, tas3b-2	2	EU293144. GQ420308-GQ420345, HM140151 (O. sativa, O. rufipogon, O. barthii). OsTAS3a in Lu et al. 2018. OsTAS3b in Luo et al. 2021, Gu et al. 2023.	 Other,  Vegetative organ - Root	Os02g0610950					GO:0010311 - lateral root formation, GO:0016246 - RNA interference		
16178	TAS3B2	OsTAS3b2, TAS3b2, OsTAS3c, TAS3c	TRANS-ACTING siRNA3B2	TRANS-ACTING siRNA3b2		tas3c-1, tas3c-2	4	EU293145. GQ420289-GQ420307, HM140147-HM140150. OsTAS3c in Luo et al. 2021, Gu et al. 2023.	 Other	Os04g0498100					GO:0016246 - RNA interference		
16179	MIR806I_AS	miR806i_as, osa-MIR806i_as	MICRORNA806HI_AS	MICRORNA806i_antisense strand	_		2	miRBASE accession: none. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
16180	MIR806J_AS	miR806j_as, osa-MIR806j_as	MICRORNA806HJ_AS	MICRORNA806j_antisense strand	_		10	miRBASE accession: none. Predicted target(s): Os03g0306800, Os09g0511900, Os03g0839800, Os01g0963600, Os04g0178300, Os09g0482640, Os11g0547000.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
16181	MIR812G	miR812g, osa-miR812g, osa-MIR812g	MICRORNA812G	MICRORNA812g osa-miRNA812g	_		4	miRBASE accession: MI0008296. Predicted target(s): Os02g0176100, Os02g0771600, Os04g0558700.LM381061	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
16182	_		_	CCAAT transcription factor, Histone H2A2			7	HQ858808. Q6ZL42. D16048.	 Other	Os07g0545400	LOC_Os07g36140.1				GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly		
16183	_	R2R3-MYB	_	MYB-related transcription factor			5	HQ858811.	 Character as QTL - Germination,  Other,  Tolerance and resistance - Stress tolerance	Os05g0589400	LOC_Os05g51160.1, LOC_Os05g51160.2				GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009845 - seed germination, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
16184	_		_	PLATZ transcription factor			2	HQ858812. 	 Other	Os02g0692700	LOC_Os02g46610.1						
16185	_	R2R3-MYB, OsMYB55/61-L, MYB55/61-L, OsMYB55, OsMYB61-L, MYB55, MYB61-L, OsMYB61L, MYB61L, OsMYB61b, MYB61b, Os2R_MYB53, 2R_MYB53, OsMYB2P-1, MYB2P-1	_	MYB transcription factor 55/61L, R2R3-MYB Transcription Factor 53			5	HQ858815. OsMYB61b in Zhao et al. 2019. OsMYB2P-1 in Naithani et al. 2023. GO:0099402: plant organ development.	 Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os05g0140100	LOC_Os05g04820.1				GO:0003677 - DNA binding, GO:0009845 - seed germination, GO:0009413 - response to flooding, GO:0003682 - chromatin binding, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance	PO:0007045 - coleoptile emergence stage , PO:0007057 - 0 seed germination stage 
16186	DLN17	OsDLN17	DLN REPRESSOR 17	DDT transcription factor, DLN repressor 17, DLN motif protein 17	DLN REPRESSOR 17		1	HQ858814. 	 Other	Os01g0672300	LOC_Os01g48180.1				GO:0003677 - DNA binding		
16187	_		_	C2H2 transcription factor			3	HQ858817.	 Other	Os03g0239300	LOC_Os03g13600.1, LOC_Os03g13600.2				GO:0046872 - metal ion binding		
16188	2R_MYB73 	R2R3-MYB, Os2R_MYB73	R2R3-MYB TRANSCRIPTION FACTOR 73	MYB transcription factor, R2R3-MYB Transcription Factor 73	R2R3-MYB TRANSCRIPTION FACTOR 73		7	HQ858821. target of Osa-miR531.	 Other	Os07g0688200	LOC_Os07g48870.1				GO:0009617 - response to bacterium, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009609 - response to symbiotic bacterium		
16189	_	Edf	_	MBF1 transcription factor, Endothelial differentiation factor			8	HQ858822. LOC_Os08g27850.	 Other	Os08g0366100	LOC_Os08g27850.1, LOC_Os08g27850.2				GO:0003713 - transcription coactivator activity, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding		
16190	BSRD1	ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91	BROAD-SPECTRUM RESISTANCE DIGU 1 	zinc finger protein 36, broad-spectrum resistance Digu 1, DLN repressor 91, DLN motif protein 91		bsr-d1	3	HQ858823. AAP51130 (AY295345). C2H2 transcription factor. C2H2-type zinc finger protein.	 Character as QTL - Germination,  Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0437200	LOC_Os03g32230.1				GO:0050832 - defense response to fungus, GO:0009629 - response to gravity, GO:0009413 - response to flooding, GO:0016209 - antioxidant activity, GO:0046872 - metal ion binding, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0006979 - response to oxidative stress	TO:0000524 - submergence tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait, TO:0002693 - gravity response trait, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
16192	DLN231	R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31, Os2R_MYB86, Os2R_MYB86, 2R_MYB86	DLN REPRESSOR 231	MYB transcription factor, DLN repressor 231, DLN motif protein 231, R2R3-MYB Transcription Factor 86	DLN REPRESSOR 231		9	HQ858827. AU184006. GO:2000762: regulation of phenylpropanoid metabolic process. myeloblastosis (MYB) family transcription factor. GO:1901141: regulation of lignin biosynthetic process. OsMYB31 in Wang et al. 2020.	 Other,  Tolerance and resistance - Disease resistance	Os09g0538400	LOC_Os09g36730.1				GO:0009809 - lignin biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0051607 - defense response to virus, GO:0003677 - DNA binding, GO:0010224 - response to UV-B, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009753 - response to jasmonic acid stimulus, GO:0003682 - chromatin binding	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance, TO:0000731 - lignin content	
16193	2R_MYB2 	Os2R_MYB2	R2R3-MYB TRANSCRIPTION FACTOR 2	MYB transcription factor, R2R3-MYB Transcription Factor 2	R2R3-MYB TRANSCRIPTION FACTOR 2		1	HQ858828. 	 Tolerance and resistance - Stress tolerance,  Other	Os01g0142500	LOC_Os01g04930.1				GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0003682 - chromatin binding	TO:0000276 - drought tolerance	
16194	SAP16	OsSAP16, ZOS7-05, OsZOS7-05	STRESS ASSOCIATED PROTEIN GENE 16	C2H2 transcription factor, stress associated protein 16, stress-associated protein 16, zinc-finger protein TFIIIA class of Oryza sativa 7-05, ZPT of Oryza sativa 7-05	STRESS ASSOCIATED PROTEIN 16	sap16-1, sap16-2, sap16-3	7	HQ858831. Q0D5B9. TO:0000748: leaf anatomy and morphology trait. Os07g0569700 was considered as the most possible functional gene underlying qRSL7 (QTL related to relative shoot length) .	 Other,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os07g0569700	LOC_Os07g38240.1				GO:0009845 - seed germination, GO:0010109 - regulation of photosynthesis, GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009611 - response to wounding, GO:0010118 - stomatal movement	TO:0001027 - net photosynthetic rate, TO:0000164 - stress trait, TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance, TO:0000043 - root anatomy and morphology trait, TO:0000207 - plant height, TO:0000352 - plant dry weight, TO:0000457 - total biomass yield, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000430 - germination rate	PO:0001170 - seed development stage 
16195	BRD2	OsBrd2, Brd2	BROMODOMAIN-CONTAINING PROTEIN 2	MYB transcription factor, bromodomain-containing protein 2	BROMODOMAIN-CONTAINING PROTEIN 2		8	HQ858840.	 Other,  Tolerance and resistance - Stress tolerance	Os08g0510700	LOC_Os08g39980.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0003682 - chromatin binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
16197	ARID1	OsARID1	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 1	ARID transcription factor, AT-rich Interaction Domain-containing protein 1, AT-Rich Interaction Domain-containing transcription factor 1, ARID-containing transcription factor 1	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 1		2	HQ858845. ARID protein, HMG subfamily.	 Other,  Tolerance and resistance - Insect resistance	Os02g0469900	LOC_Os02g27060.1, LOC_Os02g27060.2				GO:0002213 - defense response to insect, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0016740 - transferase activity	TO:0000424 - brown planthopper resistance	
16198	HMGB707	OsHMGB707	HIGH MOBILITY GROUP PROTEIN B707	HMG transcription factor	HIGH MOBILITY GROUP PROTEIN B707		4	HQ858874. high homology to AtHMGB1-5. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0564600	LOC_Os04g47690.3, LOC_Os04g47690.2, LOC_Os04g47690.1				GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000507 - osmotic adjustment capacity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000143 - relative biomass, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000371 - yield trait, TO:0000153 - relative yield	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009049 - inflorescence 
16199	_		_	ABIVP1 transcription factor			5	HQ858877. Q5KQI4.	 Other	Os05g0481400	LOC_Os05g40280.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
16200	_	Adh3, OsAdh3, ADH2, OsADH2	_	Alcohol dehydrogenase 3, alcohol dehydrogenase-3			11	FJ266019-FJ266028 (indica and other wild rice species). ADH2 in Gao et al. 2021.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0210600	LOC_Os11g10520.1, LOC_Os11g10520.2, LOC_Os11g10520.3				GO:0008270 - zinc ion binding, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009609 - response to symbiotic bacterium, GO:0009651 - response to salt stress, GO:0016491 - oxidoreductase activity, GO:0001666 - response to hypoxia, GO:0046686 - response to cadmium ion		
16201	_	RZ53	_				11	FJ266019-FJ266028 (indica and other wild rice species).		Os11g0210201	LOC_Os11g10470.1						
16202	_	NifS	_				11	FJ266019-FJ266028 (indica and other wild rice species).	 Biochemical character	Os11g0209900 					GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding		
16203	_	OsFbox594, Os_F0295, Fbox-1, OsFBX419, FBX419	_	F-box family-1, F-box protein 594, F-box-type E3 ubiquitin ligase X419			11	LOC_Os11g10400. FJ266019-FJ266028 (indica and other wild rice species). Fbox-1 (J11-1: japonica) in Ammiraju et al. 2008. Os_F0295 in Hua et al. 2011.		Os11g0209600	LOC_Os11g10400.1, LOC_Os11g10400.2						
16204	_		_	F-box family-2			11	FJ266019-FJ266028 (indica and other wild rice species).									
16205	_		_	F-box family-3			11	FJ266019-FJ266028 (indica and other wild rice species).									
16206	_		_	F-box family-4			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16207	_	OsFbox592, Os_F0128, Fbox-4, OsFBX417, FBX417	_	F-box protein 592, F-box family-4, F-box-type E3 ubiquitin ligase X417			11	LOC_Os11g10340. FJ266019-FJ266028 (indica and other wild rice species). Fbox-4 (J11-4: japonica) in Ammiraju et al. 2008. Os_F0128 in Hua et al. 2011.		Os11g0209200	LOC_Os11g10340.1						
16208	_	OsFbox591, Os_F0435, Fbox-5, OsFBX416, FBX416	_	F-box family-5, F-box protein 591, F-box-type E3 ubiquitin ligase X416			11	LOC_Os11g10330. FJ266019-FJ266028 (indica and other wild rice species). Fbox-5 (J11-5: japonica) in Ammiraju et al. 2008. Os_F0435 in Hua et al. 2011.		Os11g0209100	LOC_Os11g10330.1						
16209	_		_	F-box family-7 pseudogene			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16210	_		_	F-box family-8			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16211	_		_	S-domain receptor-like protein kinase family-1, SR kinase			11	FJ266019-FJ266028 (indica and other wild rice species). 		Os11g0208800	LOC_Os11g10290.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen		
16212	_		_	S-domain receptor-like protein kinase family-2 pseudogene, SR kinase pseudogene			11	FJ266019-FJ266028 (indica and other wild rice species). 							GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity		
16213	_		_	S-domain receptor-like protein kinase family-3, SR kinase			11	FJ266019-FJ266028 (indica and other wild rice species). 							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen		
16214	_		_	NBS-LRR disease resistance protein, NBS-LRR family			11	FJ266019-FJ266028 (indica and other wild rice species). 									
16215	FRETRO1	FRetro1	GYPSY TYPE RETROTRANSPOSON FRETRO1	Ty3-gypsy (Metaviridae) retroelement FRetro1, Ty3/gypsy LTR retrotransposon FRetro1			8	GU369677 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16216	FRETRO2	FRetro2	GYPSY TYPE RETROTRANSPOSON FRETRO2	Ty3-gypsy (Metaviridae) retroelement FRetro2, Ty3/gypsy LTR retrotransposon FRetro2			8	GU369678 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16217	FRETRO3	FRetro3	GYPSY TYPE RETROTRANSPOSON FRETRO3	Ty3-gypsy (Metaviridae) retroelement FRetro3, Ty3/gypsy LTR retrotransposon FRetro3			8	GU369679 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16218	FRETRO4	FRetro4	GYPSY TYPE RETROTRANSPOSON FRETRO4	Ty3-gypsy (Metaviridae) retroelement FRetro4, Ty3/gypsy LTR retrotransposon FRetro4			8	GU369680 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16219	FRETRO5	FRetro5	GYPSY TYPE RETROTRANSPOSON FRETRO5	Ty3-gypsy (Metaviridae) retroelement FRetro5, Ty3/gypsy LTR retrotransposon FRetro5			8	GU369681 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16220	TAS3A2	OsTAS3a2, TAS3a2, OsTAS3e, TAS3e	TRANS-ACTING siRNA3A2	TRANS-ACTING siRNA3a2			5	GQ420229-GQ420288 (O. sativa, O. rufipogon, O. barthii).  GQ420282. OsTAS3e in Luo et al. 2021, Gu et al. 2023.	 Other	Os05g0132650					GO:0016246 - RNA interference		
16221	_		_				3	HM140152-HM140183 (O. sativa, O. rufipogon). miR166e target gene. LOC_Os03g56920.		Os03g0782100	LOC_Os03g56920.1						
16222	_		_				3	miR166e target gene. LOC_Os03g16320.		Os03g0269800	LOC_Os03g16320.1						
16223	LHR	OsLHR	LONG HAIRPIN-STRUCTURE CONTAINING NON-CODING RNA	Long Hairpin-structure containing non-coding RNA		lhr	12	a miRNA-like long hairpin AK120922 or siRNA AK120922 in Wang et al. 2010. GQ420092-GQ420134 (O. sativa, O. rufipogon).	 Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os12g0618400					GO:0006306 - DNA methylation, GO:0016246 - RNA interference	TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000590 - grain weight, TO:0001027 - net photosynthetic rate, TO:0000397 - grain size, TO:0000522 - stomatal conductance	PO:0009005 - root , PO:0009010 - seed 
16224	_		_				6	peptide transporter (PTR) gene family. a miRNA-like long hairpin or siRNA in Wang et al. 2010. GQ420065-GQ420091, HM140135-HM140144 (O. sativa, O. barthii).		Os06g0324300	LOC_Os06g21900.1						
16225	_	Nhp2	_	Nucleolar protein family A member 2, high-mobility group-like protein			6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). D15191.		Os06g0274200 	LOC_Os06g16290.1				GO:0005730 - nucleolus, GO:0003723 - RNA binding		
16226	_	NAA, OsATL4	_	neutral amino acid transporter, amino acid transporter-like 4			6	AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). LOC_Os06g16420.	 Biochemical character	Os06g0275800 	LOC_Os06g16420.1, LOC_Os06g16420.2, LOC_Os06g16420.3				GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane		
16227	_	kanadaptin	_	Adaptor protein kanadaptin			6	AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species).		Os06g0275900 	LOC_Os06g16430.1				GO:0016020 - membrane		
16228	_	Lip	_	leaf senescence protein			6	AP005813. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). Os06g0273500 or Os06g0273700. 		Os06g0273500|Os06g0273700	LOC_Os06g16240.1, LOC_Os06g16250.1				GO:0016020 - membrane		
16229	_		_	importin 9			6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). 		Os06g0274100	LOC_Os06g16280.1				GO:0006886 - intracellular protein transport, GO:0005634 - nucleus		
16230	_	SEPK1	_	Somatic Embryogenesis Receptor Kinase 1, BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1			6	AP005813, AP003044. J581043-FJ581047 and GQ407104-GQ407107 (indica and other wild rice species). LOC_Os06g16300.		Os06g0274300	LOC_Os06g16300.1, LOC_Os06g16300.3				GO:0016301 - kinase activity		
16231	_	AdIT	_	adenylate isopentenyl transferase			6	GQ407104 (O. granulata). 	 Biochemical character						GO:0005524 - ATP binding, GO:0016740 - transferase activity, GO:0008033 - tRNA processing		
16232	FRETRO64	FRetro64	RETROTRANSPOSON FRETRO64	retrotransposon FRetro64, LTR retrotransposon FRetro64				JN806224 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16233	FRETRO129	FRetro129, SMART	RETROTRANSPOSON FRETRO129	retrotransposon FRetro129, LTR retrotransposon FRetro129, FRetro129 homolog, small LTR retrotransposon				JN806223 (Oryza brachyantha).	 Other						GO:0032196 - transposition		
16234	_	osa-smRNA87	_	SMART-specific small RNA 87, SMART-specific sRNA 87					 Other								
16235	_	osa-smRNA1629	_	SMART-specific small RNA 1629, SMART-specific sRNA 1629					 Other								
16236	_	osa-smRNA11575	_	SMART-specific small RNA 11575, SMART-specific sRNA 11575					 Other								
16237	_	osa-smRNA15336	_	SMART-specific small RNA 15336, SMART-specific sRNA 15336					 Other								
16238	_	osa-smRNA26529	_	SMART-specific small RNA 26529, SMART-specific sRNA 26529					 Other								
16239	_	osa-smRNA27409	_	SMART-specific small RNA 27409, SMART-specific sRNA 27409					 Other								
16240	_	osa-smRNA28265	_	SMART-specific small RNA 28265, SMART-specific sRNA 28265					 Other								
16241	_	osa-smRNA41835	_	SMART-specific small RNA 41835, SMART-specific sRNA 41835					 Other								
16242	_	osa-smRNA55476	_	SMART-specific small RNA 55476, SMART-specific sRNA 55476					 Other								
16243	_	osa-smRNA60213	_	SMART-specific small RNA 60213, SMART-specific sRNA 60213					 Other								
16244	_	osa-smRNA73491	_	SMART-specific small RNA 73491, SMART-specific sRNA 73491					 Other								
16245	_	osa-smRNA83486	_	SMART-specific small RNA 83486, SMART-specific sRNA 83486					 Other								
16246	_	osa-smRNA95248	_	SMART-specific small RNA 95248, SMART-specific sRNA 95248					 Other								
16247	_	osac11smRNA288	_	SMART-specific small RNA osac11smRNA288, SMART-specific sRNA osac11smRNA288					 Other								
16248	_	osa-smRNA96292	_	SMART-specific small RNA 96292, SMART-specific sRNA 96292					 Other								
16249	_	osac1-smRNA38	_	SMART-specific small RNA osac1-smRNA38, SMART-specific sRNA osac1-smRNA38					 Other								
16250	_	osa-smRNA109754	_	SMART-specific small RNA 109754, SMART-specific sRNA 109754					 Other								
16251	_	osa-smRNA117590	_	SMART-specific small RNA 117590, SMART-specific sRNA 117590					 Other								
16252	_	osac1-smRNA25	_	SMART-specific small RNA osac1-smRNA25, SMART-specific sRNA osac1-smRNA25					 Other								
16253	_	osa-smRNA129401	_	SMART-specific small RNA 129401, SMART-specific sRNA 129401					 Other								
16254	_	osa-smRNA131555	_	SMART-specific small RNA 131555, SMART-specific sRNA 131555					 Other								
16255	MGING	mGing	MGING ELEMENT	mGing element, miniature Ging element				a member of Gaijin-like miniature inverted repeat transposable element (Gaijin-like MITEs), a sub-class of Tourist-like MITE. mGing was found in the 4th intron of the PLRRP gene (Os01g0140400).	 Other						GO:0032196 - transposition		
16256	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			3	JN016861.	 Other						GO:0032196 - transposition		
16257	MRLP1	PLRRP, OsMRLP1	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 1	putative leucine rich repeat protein	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 1		1			Os01g0140400	LOC_Os01g04720.1, LOC_Os01g04720.2				GO:0005773 - vacuole, GO:0016301 - kinase activity, GO:0005794 - Golgi apparatus, GO:0005768 - endosome, GO:0005886 - plasma membrane, GO:0005802 - trans-Golgi network		
16258	_		_	Pi2/9 homolog			6	LOC_Os06g17950.		Os06g0287500	LOC_Os06g17950.1				GO:0043531 - ADP binding		
16259	_		_	Pi2/9 homolog			6	LOC_Os06g17970.		Os06g0287700	LOC_Os06g17970.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
16260	_		_	Pi2/9 homolog			6	LOC_Os06g17930.		Os06g0287200	LOC_Os06g17930.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
16262	_		_	Pi2/9 homolog			6	LOC_Os06g17920-pseudo.		Os06g0287000	LOC_Os06g17920.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
16263	MU4-2	OsMu4-2	MU-LIKE TRANSPOSABLE ELEMENT 4-2	Mu-like transposable element 4-2			1	maize MuDR-like transposable element. AF433636. OsMu4-2 carries a MURA-like transposase pseudogene.	 Other								
16264	MU10-1	OsMu10-1	MU-LIKE TRANSPOSABLE ELEMENT 10-1	Mu-like transposable element 10-1				maize MuDR-like transposable element. AF433637. 	 Other								
16265	MU79843	OsMu79843	MU-LIKE TRANSPOSABLE ELEMENT 79843	Mu-like transposable element 79843			10	maize MuDR-like transposable element.	 Other								
16266	MU74283	OsMu74283	MU-LIKE TRANSPOSABLE ELEMENT 74283	Mu-like transposable element 74283			10	maize MuDR-like transposable element.	 Other								
16267	MU03854	OsMu03854	MU-LIKE TRANSPOSABLE ELEMENT 03854	Mu-like transposable element 03854			1	maize MuDR-like transposable element.	 Other								
16268	MU91665	OsMu91665	MU-LIKE TRANSPOSABLE ELEMENT 91665	Mu-like transposable element 91665			10	maize MuDR-like transposable element.	 Other								
16269	MU90882	OsMu90882	MU-LIKE TRANSPOSABLE ELEMENT 90882	Mu-like transposable element 90882			3	maize MuDR-like transposable element.	 Other								
16270	MU03578	OsMu03578	MU-LIKE TRANSPOSABLE ELEMENT 03578	Mu-like transposable element 03578			1	maize MuDR-like transposable element.	 Other								
16272	_		_				8	C98506. RMu1-A23 (accession no. AB023047) is 99% identical to a cDNA from rice (accession no. C98506). Os08g0194400 (in Rap1 (build3), Rap2 (build4)).  LOC_Os08g09520. F-box protein.	 Biochemical character		LOC_Os08g09520				GO:0004803 - transposase activity, GO:0008270 - zinc ion binding, GO:0006313 - transposition, DNA-mediated, GO:0003677 - DNA binding		
16273	_	Os-MuDR	_	MuDR-like element				AB012392.	 Biochemical character						GO:0032196 - transposition, GO:0006280 - mutagenesis		
16274	_	Os-MURA	_	Os-MURA protein				AB012392. Os-MuDR encoding a putative Os-MURA protein.	 Biochemical character						GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
16275	_	X1, OsFDML3, FDML3	_	transcription factor X1, FACTOR OF DNA METHYLATION LIKE 3			1	LOC_Os01g44230. GO:0080188: RNA-directed DNA methylation.		Os01g0633200	LOC_Os01g44230.1, LOC_Os01g44230.2						
16276	TET13	OsSAP, SAP, OsTET13	TETRASPANIN 13	senescence associated protein, tetraspanin 13	TETRASPANIN 13		9	AY224518.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os09g0425900 	LOC_Os09g25760.1				GO:0006970 - response to osmotic stress, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
16277	GLYR1	OsGLYR1, OsGR1, GR1	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 1 	gamma hydroxybutyrate dehydrogenase, glyoxylate/succinic semialdehyde reductase 1, glyoxylate reductase 1	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 1 		2	AY224558.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0562700	LOC_Os02g35500.1				GO:0051287 - NAD or NADH binding, GO:0005829 - cytosol, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity, GO:0003858 - 3-hydroxybutyrate dehydrogenase activity, GO:0050662 - coenzyme binding, GO:0010037 - response to carbon dioxide, GO:0009648 - photoperiodism, GO:0046487 - glyoxylate metabolic process, GO:0070402 - NADPH binding, GO:0008442 - 3-hydroxyisobutyrate dehydrogenase activity, GO:0006979 - response to oxidative stress, GO:0006573 - valine metabolic process, GO:0006098 - pentose-phosphate shunt	TO:0000207 - plant height, TO:0000229 - photoperiod sensitivity	
16278	_	SIP24	_	myosin, SKIP interacting protein 24, SKIPa-interacting protein 24, SKIPa-interacting protein 24			10	AY224548. EU368714. LOC_Os10g36060. 		Os10g0504600	LOC_Os10g36060.1				GO:0007049 - cell cycle, GO:0005856 - cytoskeleton		
16279	_		_	PHD zinc finger protein			3	AY224545.		Os03g0143600	LOC_Os03g04980.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0016568 - chromatin modification		
16280	_		_	heavy meromyosin-like protein			3	AY224542.		Os03g0789200	LOC_Os03g57530.1						
16281	_	SIP6	_	muscle derived-like protein, SKIP interacting protein 6, SKIPa-interacting protein 6, SKIPa-interacting protein 6			3	AY224541. EU368696. LOC_Os03g17930. 		Os03g0288600	LOC_Os03g17930.1, LOC_Os03g17930.2, LOC_Os03g17930.3				GO:0007049 - cell cycle, GO:0005856 - cytoskeleton		
16282	PUB2	OsPUB2, OsPUB02, OsPUB2, PUB2	PLANT U-BOX-CONTAINING PROTEIN 2	arm repeat protein, plant U-box-containing protein 2, U-box protein 2, U-box-type E3 ubiquitin ligase 2	PLANT U-BOX-CONTAINING PROTEIN 2		5	AY224537. class II PUB protein (U-box + ARM/HEAT). EST: D23908, AU164828,AI096152, C73275.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0476700	LOC_Os05g39930.1				GO:0009409 - response to cold, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0007623 - circadian rhythm	TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
16283	PUB3	OsPUB3, OsPUB03, OsPUB3, PUB3	PLANT U-BOX-CONTAINING PROTEIN 3	arm repeat cell adhesion protein, arm repeat protein, plant U-box-containing protein 3, U-box protein 3, U-box-type E3 ubiquitin ligase 3	PLANT U-BOX-CONTAINING PROTEIN 3	OsPUB3ZS97, OsPUB3MY46	1	AY224536. class II PUB protein (U-box + ARM/HEAT). EST: BI809145, AU070503,CB631190, D48112, AU165954. the causal gene for qGS1-35.2 (A quantitative trait locus controlling grain length and width). TO:0000975: grain width.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character,  Seed - Morphological traits - Grain shape	Os01g0823900	LOC_Os01g60860.1				GO:0009651 - response to salt stress, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0009409 - response to cold, GO:0005829 - cytosol	TO:0006001 - salt tolerance, TO:0000495 - chlorophyll content, TO:0002730 - grain shape, TO:0000397 - grain size, TO:0000303 - cold tolerance, TO:0000382 - 1000-seed weight, TO:0000411 - seed length to width ratio, TO:0000152 - panicle number, TO:0000456 - spikelet number, TO:0000447 - filled grain number, TO:0000590 - grain weight	
16284	MC5	OsMC5	METACASPASE 5	latex-abundant protein, latex-abundant protein-like protein, Metacaspase 5	METACASPASE 5		5	AY224533.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0496500	LOC_Os05g41670.1				GO:0050832 - defense response to fungus, GO:0004197 - cysteine-type endopeptidase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000255 - sheath blight disease resistance	
16285	_	HS1	_	putative nematode-resistance protein			1	AY224522.		Os01g0855600	LOC_Os01g63690.1				GO:0009751 - response to salicylic acid stimulus, GO:0006979 - response to oxidative stress, GO:0009816 - defense response to bacterium, incompatible interaction		
16286	_		_	development protein			6	AY224520.		Os06g0643300	LOC_Os06g43590.2, LOC_Os06g43590.3, LOC_Os06g43590.4				GO:0040007 - growth, GO:0009793 - embryonic development ending in seed dormancy, GO:0000578 - embryonic axis specification, GO:0032509 - endosome transport via multivesicular body sorting pathway, GO:0015031 - protein transport		
16287	_		_	leucine-rich repeat kinase			10	AY224517.		Os10g0389800	LOC_Os10g25090.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
16288	RLCK377	OsRLCK377, OsRLK902-2, RLK902-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 377	Receptor-like Cytoplasmic Kinase 377, RECEPTOR LIKE KINASE 902-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 377		3	AY224516. receptor kinase. LOC_Os03g12238/LOC_Os03g12250.	 Tolerance and resistance - Disease resistance	Os03g0223000	LOC_Os03g12238.1, LOC_Os03g12250.1				GO:0009610 - response to symbiotic fungus, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009505 - plant-type cell wall, GO:0009506 - plasmodesma	TO:0000074 - blast disease	
16289	_	NP70	_				8	JQ415155-JQ415261 (wild rice species).		Os08g0427300	LOC_Os08g33076.1						
16290	DLN31	R2R3-MYB, OsDLN31, MYB3, OsMYB22, MYB22, Os2R_MYB18, 2R_MYB18	DLN REPRESSOR 31	DLN repressor 31, DLN motif protein 31, R2R3-MYB Transcription Factor 18	DLN REPRESSOR 31	osmyb22	1	AY459335, AU082180. AU183276. MYB3 in Xue et al. 2021. OsMYB22 in Qiu et al. 2022, Sun et al. 2024. GO:1900055: regulation of leaf senescence. GO:1900367: positive regulation of defense response to insect.	 Other,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0874300	LOC_Os01g65370.1				GO:0009631 - cold acclimation, GO:0046686 - response to cadmium ion, GO:0030912 - response to deep water, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0010150 - leaf senescence, GO:0009964 - negative regulation of flavonoid biosynthetic process, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0002213 - defense response to insect, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0050832 - defense response to fungus	TO:0000524 - submergence tolerance, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000249 - leaf senescence, TO:0000276 - drought tolerance	
16291	GL1A	R2R3-MYB, OsGL1A, DLN218, OsDLN218, OsMYB102, MYB102, Os2R_MYB81, 2R_MYB81	GLABRA 1A	GLABRA1A, DLN repressor 218, DLN motif protein 218, MYB transcription factor 102, R2R3-MYB Transcription Factor 81	DLN REPRESSOR 218		8	AY459336, CB653197. a homologue of Arabidopsis transcription factor GL1. OsMYB102 in Muthuramalingam et al. 2022. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance,  Other	Os08g0549000	LOC_Os08g43550.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0046686 - response to cadmium ion, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0005739 - mitochondrion, GO:0005634 - nucleus, GO:0001666 - response to hypoxia	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009047 - stem , PO:0009037 - lemma , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0025034 - leaf 
16292	2R_MYB97	R2R3-MYB, Os2R_MYB97	R2R3-MYB TRANSCRIPTION FACTOR 97	R2R3-MYB Transcription Factor 97	R2R3-MYB TRANSCRIPTION FACTOR 97		12	AY459337, CB621846.	 Other	Os12g0564100	LOC_Os12g37690.1				GO:0003677 - DNA binding		
16293	2R_MYB4 	R2R3-MYB, Os2R_MYB4	R2R3-MYB TRANSCRIPTION FACTOR 4	R2R3-MYB Transcription Factor 4	R2R3-MYB TRANSCRIPTION FACTOR 4		1	AY459339, C72014. CB682826.	 Other	Os01g0191900	LOC_Os01g09590.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16294	DLN156	R2R3-MYB, OsDLN156, Os2R_MYB62, 2R_MYB62	DLN REPRESSOR 156	DLN repressor 156, DLN motif protein 156, R2R3-MYB Transcription Factor 62	DLN REPRESSOR 156		6	AY459342, AF474134.	 Other	Os06g0112700	LOC_Os06g02250.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16296	MYB1	OsMyb1, OSMYB1, R2R3-MYB, OsDLN141, DLN141, Os2R_MYB55, 2R_MYB55	MYB TRANSCRIPTION FACTOR 1	DLN repressor 141, DLN motif protein 141, R2R3-MYB Transcription Factor 55, myb transcription factor 1, transcription factor MYB1	MYB TRANSCRIPTION FACTOR 1		5	D88617.	 Tolerance and resistance - Stress tolerance,  Other	Os05g0429900	LOC_Os05g35500.1				GO:0009408 - response to heat, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000432 - temperature response trait	
16297	_	R2R3-MYB	_				4	CA753778.	 Other	Os04g0389600	LOC_Os04g32000.1, LOC_Os04g32000.2						
16298	MYB21	R2R3-MYB, OsMYB21, Os2R_MYB27, 2R_MYB27	MYELOBLASTOSIS 21	myeloblastosis 21, R2R3-MYB Transcription Factor 27	MYB Transcription Factor 21		2	AU062529. AB010834.	 Other	Os02g0641300	LOC_Os02g42850.1, LOC_Os02g42850.2				GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0007584 - response to nutrient	TO:0000480 - nutrient sensitivity	
16299	2R_MYB72 	R2R3-MYB, Os2R_MYB72	R2R3-MYB TRANSCRIPTION FACTOR 72	R2R3-MYB Transcription Factor 72	R2R3-MYB TRANSCRIPTION FACTOR 72		7	GO: 0080167: response to karrikin.	 Other	Os07g0629000	LOC_Os07g43580.1				GO:0009733 - response to auxin stimulus, GO:0003677 - DNA binding, GO:0046686 - response to cadmium ion, GO:0003682 - chromatin binding, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress		
16300	MYB102	R2R3-MYB, OsMYB102, OsMYB81, MYB81	MYB TRANSCRIPTION FACTOR 102	Myb transcription factor 102	MYB TRANSCRIPTION FACTOR 102	osmyb102, osmyb102-D	6	GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000031: regulation of salicylic acid mediated signaling pathway. GO:1900055: regulation of leaf senescence. GO:1900056: negative regulation of leaf senescence. OsMYB81 in Muthuramalingam et al. 2022.	 Other,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os06g0637500	LOC_Os06g43090.1				GO:0009414 - response to water deprivation, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold, GO:0001666 - response to hypoxia, GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0009628 - response to abiotic stimulus, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium, GO:0010200 - response to chitin, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0046686 - response to cadmium ion, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0003682 - chromatin binding, GO:0010150 - leaf senescence, GO:0009788 - negative regulation of abscisic acid mediated signaling	TO:0000249 - leaf senescence, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009038 - palea , PO:0009037 - lemma , PO:0009047 - stem , PO:0009066 - anther , PO:0009072 - plant ovary , PO:0009089 - endosperm , PO:0001054 - 4 leaf senescence stage , PO:0009030 - carpel , PO:0009009 - plant embryo 
16301	2R_MYB20	R2R3-MYB, OsEnS-23, Os2R_MYB20	R2R3-MYB TRANSCRIPTION FACTOR 20	endosperm-specific gene 23, R2R3-MYB Transcription Factor 20	R2R3-MYB TRANSCRIPTION FACTOR 20		1		 Other	Os01g0977300	LOC_Os01g74590.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16302	_	R2R3-MYB	_				6	GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0258000	LOC_Os06g14670.1				GO:0009414 - response to water deprivation, GO:0019740 - nitrogen utilization, GO:0003677 - DNA binding, GO:0003682 - chromatin binding	TO:0000276 - drought tolerance, TO:0000153 - relative yield, TO:0000011 - nitrogen sensitivity	
16303	MYB20	OsMYB20, MYB20/43, Os2R_MYB30, 2R_MYB30	MYB TRANSCRIPTION FACTOR 20	myb transcription factor 20, R2R3-MYB Transcription Factor 30	MYB TRANSCRIPTION FACTOR 20		2	R2R3-MYB. MYB20/43 in Madana et al. 2011.	 Other	Os02g0732600	LOC_Os02g49986.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16304	MYB44	R2R3-MYB, OsMYB44	MYB TRANSCRIPTION FACTOR 44	MYB Transcription Factor 44	MYB TRANSCRIPTION FACTOR 44		9	GO:0035835: indole alkaloid biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0106700	LOC_Os09g01960.1				GO:0009821 - alkaloid biosynthetic process, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity	
16305	MYB4P	OsMYB4P, Os2R_MYB90, 2R_MYB90	MYB TRANSCRIPTION FACTOR 4P	R2R3-MYB Transcription Factor 90	MYB TRANSCRIPTION FACTOR 4P		11	an R2R3-type MYB transcriptional activator. TO:0020102: phosphate content.	 Reproductive organ - Panicle, Mode of branching,  Other,  Seed - Physiological traits,  Tolerance and resistance - Stress tolerance	Os11g0558200	LOC_Os11g35390.1				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0010229 - inflorescence development, GO:0055062 - phosphate ion homeostasis	TO:0000409 - peak viscosity, TO:0000374 - breakdown viscosity, TO:0000462 - gelatinization temperature, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000456 - spikelet number, TO:0000501 - spikelet weight, TO:0000050 - inflorescence branching	PO:0001083 - inflorescence development stage 
16306	2R_MYB45	R2R3-MYB, Os2R_MYB45	R2R3-MYB TRANSCRIPTION FACTOR 45	R2R3-MYB Transcription Factor 45	R2R3-MYB TRANSCRIPTION FACTOR 45		4		 Other	Os04g0508500	LOC_Os04g42950.1				GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16307	2R_MYB47	R2R3-MYB, Os2R_MYB47	R2R3-MYB TRANSCRIPTION FACTOR 47	R2R3-MYB Transcription Factor 47	R2R3-MYB TRANSCRIPTION FACTOR 47		4		 Tolerance and resistance - Stress tolerance,  Other	Os04g0532800	LOC_Os04g45020.1				GO:0003682 - chromatin binding, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	
16308	FLP	OsFLP	FOUR LIPS			t-osflp-1, t-osflp-2, osflp	7	R2R3-MYB. GO:2000038: regulation of stomatal complex development. GO:0090333: regulation of stomatal closure. TO:0020095: stomatal process related trait.	 Other,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os07g0627300	LOC_Os07g43420.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0010374 - stomatal complex development, GO:0010235 - guard mother cell cytokinesis, GO:0010442 - guard cell morphogenesis, GO:0010377 - guard cell fate commitment, GO:0030104 - water homeostasis, GO:0010118 - stomatal movement, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000136 - relative water content, TO:0001034 - relative plant height, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009006 - shoot system 
16309	_	R2R3-MYB, MYB48/59, OsMYB48/59, Os2R_MYB98, 2R_MYB98	_	R2R3-MYB Transcription Factor 98			12	AK107214. CA767403. Q4JL76. GO:1900055: regulation of leaf senescence.	 Coloration,  Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Leaf	Os12g0567300	LOC_Os12g37970.1, LOC_Os12g37970.3, LOC_Os12g37970.2				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0003677 - DNA binding, GO:0003682 - chromatin binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010150 - leaf senescence, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000249 - leaf senescence	
16310	DLN254	R2R3-MYB, OsDLN254, OsMYB2, Os2R_MYB94, 2R_MYB94	DLN REPRESSOR 254	DLN repressor 254, DLN motif protein 254, R2R3-MYB Transcription Factor 94	DLN REPRESSOR 254		12	OsMYB2 in Wang et al. 2021.	 Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Other	Os12g0175400	LOC_Os12g07640.1				GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
16311	_	R2R3-MYB	_				3	AAL84631. AF474141.	 Other						GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16312	_	R2R3-MYB	_				3	AAL84626. AF474136.	 Other						GO:0003682 - chromatin binding, GO:0003677 - DNA binding		
16313	_	R2R3-MYB	_				9	AAL84627. AF474137.	 Other						GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
16314	RIM2-M1	Rim2-M1	TRANSPOSON CACTG ELEMENT RIM2-M1	transposon CACTG element Rim2-M1			1	AP003446: 28,606-28,879.	 Other						GO:0032196 - transposition		
16315	RIM2-M2	Rim2-M2	TRANSPOSON CACTG ELEMENT RIM2-M2	transposon CACTG element Rim2-M2			10	AC087545: 61,148-61,523.	 Other						GO:0032196 - transposition		
16316	RIM2-M3	Rim2-M3	TRANSPOSON CACTG ELEMENT RIM2-M3	transposon CACTG element Rim2-M3			10	AC079852: 154,681-155,629.	 Other						GO:0032196 - transposition		
16317	RIM2-M4	Rim2-M4	TRANSPOSON CACTG ELEMENT RIM2-M4	transposon CACTG element Rim2-M4			3	AC091123: 37,171-38,121.	 Other						GO:0032196 - transposition		
16318	RIM2-M5	Rim2-M5	TRANSPOSON CACTG ELEMENT RIM2-M5	transposon CACTG element Rim2-M5			5	AC073405: 42,916-43,930.	 Other						GO:0032196 - transposition		
16319	RIM2-M6	Rim2-M6	TRANSPOSON CACTG ELEMENT RIM2-M6	transposon CACTG element Rim2-M6			1	AP002865: 73,090-74,112.	 Other						GO:0032196 - transposition		
16320	RIM2-M7	Rim2-M7	TRANSPOSON CACTG ELEMENT RIM2-M7	transposon CACTG element Rim2-M7			11	AP003050: 54,222-55,246.	 Other						GO:0032196 - transposition		
16321	RIM2-M8	Rim2-M8	TRANSPOSON CACTG ELEMENT RIM2-M8	transposon CACTG element Rim2-M8			5	AP001111: 11,561-12,594.	 Other						GO:0032196 - transposition		
16322	RIM2-M9	Rim2-M9	TRANSPOSON CACTG ELEMENT RIM2-M9	transposon CACTG element Rim2-M9			10	AC091735: 1,541-2,575.	 Other						GO:0032196 - transposition		
16323	RIM2-M10	Rim2-M10	TRANSPOSON CACTG ELEMENT RIM2-M10	transposon CACTG element Rim2-M10			10	AC074105: 20,350-21,398.	 Other						GO:0032196 - transposition		
16324	RIM2-M11	Rim2-M11	TRANSPOSON CACTG ELEMENT RIM2-M11	transposon CACTG element Rim2-M11			1	AP003725: 56,488-57,549.	 Other						GO:0032196 - transposition		
16325	RIM2-M12	Rim2-M12	TRANSPOSON CACTG ELEMENT RIM2-M12	transposon CACTG element Rim2-M12			1	AP003853: 13,867-14,955.	 Other						GO:0032196 - transposition		
16326	RIM2-M13	Rim2-M13	TRANSPOSON CACTG ELEMENT RIM2-M13	transposon CACTG element Rim2-M13			3	AC079853: 19,643-18,551.	 Other						GO:0032196 - transposition		
16327	RIM2-M14	Rim2-M14	TRANSPOSON CACTG ELEMENT RIM2-M14	transposon CACTG element Rim2-M14			3	AC093017: 27,449-28,544.	 Other						GO:0032196 - transposition		
16328	RIM2-M15	Rim2-M15	TRANSPOSON CACTG ELEMENT RIM2-M15	transposon CACTG element Rim2-M15			10	AC074283: 86,665-87,762.	 Other						GO:0032196 - transposition		
16329	RIM2-M16	Rim2-M16	TRANSPOSON CACTG ELEMENT RIM2-M16	transposon CACTG element Rim2-M16			1	AP002914: 104,160-105,259.	 Other						GO:0032196 - transposition		
16330	RIM2-M17	Rim2-M17	TRANSPOSON CACTG ELEMENT RIM2-M17	transposon CACTG element Rim2-M17			10	AC073391: 140,926-142,041.	 Other						GO:0032196 - transposition		
16331	RIM2-M18	Rim2-M18	TRANSPOSON CACTG ELEMENT RIM2-M18	transposon CACTG element Rim2-M18			10	AC087550: 107,893-109,009.	 Other						GO:0032196 - transposition		
16332	RIM2-M19	Rim2-M19	TRANSPOSON CACTG ELEMENT RIM2-M19	transposon CACTG element Rim2-M19			3	AC084767: 85,163-86,289.	 Other						GO:0032196 - transposition		
16333	RIM2-M20	Rim2-M20	TRANSPOSON CACTG ELEMENT RIM2-M20	transposon CACTG element Rim2-M20			10	AC073393: 98,460-99,588.	 Other						GO:0032196 - transposition		
16334	RIM2-M21	Rim2-M21	TRANSPOSON CACTG ELEMENT RIM2-M21	transposon CACTG element Rim2-M21			1	AP003345: 99,33-11,062.	 Other						GO:0032196 - transposition		
16335	RIM2-M22	Rim2-M22	TRANSPOSON CACTG ELEMENT RIM2-M22	transposon CACTG element Rim2-M22				AC18884: 145,261-146,394.	 Other						GO:0032196 - transposition		
16336	RIM2-M23	Rim2-M23	TRANSPOSON CACTG ELEMENT RIM2-M23	transposon CACTG element Rim2-M23			10	AC093181: 64,197-65,360.	 Other						GO:0032196 - transposition		
16337	RIM2-M24	Rim2-M24	TRANSPOSON CACTG ELEMENT RIM2-M24	transposon CACTG element Rim2-M24				AC18884: 62,618-63,790.	 Other						GO:0032196 - transposition		
16338	RIM2-M25	Rim2-M25	TRANSPOSON CACTG ELEMENT RIM2-M25	transposon CACTG element Rim2-M25			3	AC084767: 55,628-56,822.	 Other						GO:0032196 - transposition		
16339	RIM2-M26	Rim2-M26	TRANSPOSON CACTG ELEMENT RIM2-M26	transposon CACTG element Rim2-M26			1	AP001278: 117,799-119,009.	 Other						GO:0032196 - transposition		
16340	RIM2-M27	Rim2-M27	TRANSPOSON CACTG ELEMENT RIM2-M27	transposon CACTG element Rim2-M27			10	AC079936: 122,087-123,300.	 Other						GO:0032196 - transposition		
16341	RIM2-M28	Rim2-M28	TRANSPOSON CACTG ELEMENT RIM2-M28	transposon CACTG element Rim2-M28			3	AC084762: 122,316-123,536.	 Other						GO:0032196 - transposition		
16342	RIM2-M29	Rim2-M29	TRANSPOSON CACTG ELEMENT RIM2-M29	transposon CACTG element Rim2-M29			10	AC084884: 107,406-106,185.	 Other						GO:0032196 - transposition		
16343	RIM2-M30	Rim2-M30	TRANSPOSON CACTG ELEMENT RIM2-M30	transposon CACTG element Rim2-M30			3	AC104179: 70,280-71,504.	 Other						GO:0032196 - transposition		
16344	RIM2-M31	Rim2-M31	TRANSPOSON CACTG ELEMENT RIM2-M31	transposon CACTG element Rim2-M31			1	AP003281: 13,595-14,821.	 Other						GO:0032196 - transposition		
16345	RIM2-M32	Rim2-M32	TRANSPOSON CACTG ELEMENT RIM2-M32	transposon CACTG element Rim2-M32			1	AP003706: 22,512-23,738.	 Other						GO:0032196 - transposition		
16346	RIM2-M33	Rim2-M33	TRANSPOSON CACTG ELEMENT RIM2-M33	transposon CACTG element Rim2-M33			1	AP002855: 29,711-30,943.	 Other						GO:0032196 - transposition		
16347	RIM2-M34	Rim2-M34	TRANSPOSON CACTG ELEMENT RIM2-M34	transposon CACTG element Rim2-M34			1	AP003247: 65,653-66,892.	 Other						GO:0032196 - transposition		
16348	RIM2-M35	Rim2-M35	TRANSPOSON CACTG ELEMENT RIM2-M35	transposon CACTG element Rim2-M35			1	AP002070: 167,835-169,106.	 Other						GO:0032196 - transposition		
16349	RIM2-M36	Rim2-M36	TRANSPOSON CACTG ELEMENT RIM2-M36	transposon CACTG element Rim2-M36			1	AP002541: 7,494-8,765.	 Other						GO:0032196 - transposition		
16350	RIM2-M37	Rim2-M37	TRANSPOSON CACTG ELEMENT RIM2-M37	transposon CACTG element Rim2-M37			1	AP003330: 31,35-4,409.	 Other						GO:0032196 - transposition		
16351	RIM2-M38	Rim2-M38	TRANSPOSON CACTG ELEMENT RIM2-M38	transposon CACTG element Rim2-M38			10	AC091665: 78,897-80,202.	 Other						GO:0032196 - transposition		
16352	RIM2-M39	Rim2-M39	TRANSPOSON CACTG ELEMENT RIM2-M39	transposon CACTG element Rim2-M39			1	AP003546: 15,080-16,433.	 Other						GO:0032196 - transposition		
16353	RIM2-M40	Rim2-M40	TRANSPOSON CACTG ELEMENT RIM2-M40	transposon CACTG element Rim2-M40			3	AC090713: 86,699-88,072.	 Other						GO:0032196 - transposition		
16354	RIM2-M41	Rim2-M41	TRANSPOSON CACTG ELEMENT RIM2-M41	transposon CACTG element Rim2-M41			1	AP003209: 37,510-39,012.	 Other						GO:0032196 - transposition		
16355	RIM2-M42	Rim2-M42	TRANSPOSON CACTG ELEMENT RIM2-M42	transposon CACTG element Rim2-M42			1	AP003201: 75,445-76,955.	 Other						GO:0032196 - transposition		
16356	RIM2-M43	Rim2-M43	TRANSPOSON CACTG ELEMENT RIM2-M43	transposon CACTG element Rim2-M43			1	AP003434: 63,743-65,538.	 Other						GO:0032196 - transposition		
16357	RIM2-M44	Rim2-M44	TRANSPOSON CACTG ELEMENT RIM2-M44	transposon CACTG element Rim2-M44			1	AP003199: 32,734-34,819.	 Other						GO:0032196 - transposition		
16358	RIM2-M45	Rim2-M45	TRANSPOSON CACTG ELEMENT RIM2-M45	transposon CACTG element Rim2-M45			1	AP003074: 7,954-11,965.	 Other						GO:0032196 - transposition		
16359	RIM2-M46	Rim2-M46	TRANSPOSON CACTG ELEMENT RIM2-M46	transposon CACTG element Rim2-M46			1	AP003047: 129,597-133,758.	 Other						GO:0032196 - transposition		
16360	RIM2-M47	Rim2-M47	TRANSPOSON CACTG ELEMENT RIM2-M47	transposon CACTG element Rim2-M47			10	AC097447: 7,089-11,959.	 Other						GO:0032196 - transposition		
16361	RIM2-M48	Rim2-M48	TRANSPOSON CACTG ELEMENT RIM2-M48	transposon CACTG element Rim2-M48			10	AC025296: 125,672-130,726.	 Other						GO:0032196 - transposition		
16362	RIM2-M49	Rim2-M49	TRANSPOSON CACTG ELEMENT RIM2-M49	transposon CACTG element Rim2-M49			1	AP003105: 79,813-85,026.	 Other						GO:0032196 - transposition		
16363	RIM2-M50	Rim2-M50	TRANSPOSON CACTG ELEMENT RIM2-M50	transposon CACTG element Rim2-M50			1	AP003298: 20,070-25,457.	 Other						GO:0032196 - transposition		
16364	RIM2-M51	Rim2-M51	TRANSPOSON CACTG ELEMENT RIM2-M51	transposon CACTG element Rim2-M51			10	AC090482: 153,729-159,123.	 Other						GO:0032196 - transposition		
16365	RIM2-M52	Rim2-M52	TRANSPOSON CACTG ELEMENT RIM2-M52	transposon CACTG element Rim2-M52			1	AP002523: 23,301-28,729.	 Other						GO:0032196 - transposition		
16366	RIM2-M53	Rim2-M53	TRANSPOSON CACTG ELEMENT RIM2-M53	transposon CACTG element Rim2-M53, transposon Rim2 M53			1	AP003266: 76,530-82,252. BK000333.	 Other						GO:0032196 - transposition		
16367	RIM2-M54	Rim2-M54	TRANSPOSON CACTG ELEMENT RIM2-M54	transposon CACTG element Rim2-M54			1	AP003143: 76,766-82,584.	 Other						GO:0032196 - transposition		
16368	RIM2-M55	Rim2-M55	TRANSPOSON CACTG ELEMENT RIM2-M55	transposon CACTG element Rim2-M55			10	AC090441: 108,362-114,216.	 Other						GO:0032196 - transposition		
16369	RIM2-M56	Rim2-M56	TRANSPOSON CACTG ELEMENT RIM2-M56	transposon CACTG element Rim2-M56			1	AP003578: 126,041-134,114.	 Other						GO:0032196 - transposition		
16370	RIM2-M57	Rim2-M57	TRANSPOSON CACTG ELEMENT RIM2-M57	transposon CACTG element Rim2-M57			10	AC069324: 71,509-81,108.	 Other						GO:0032196 - transposition		
16371	RIM2-M58	Rim2-M58	TRANSPOSON CACTG ELEMENT RIM2-M58	transposon CACTG element Rim2-M58			10	AC112513: 76,657-86,361.	 Other						GO:0032196 - transposition		
16372	RIM2-M59	Rim2-M59	TRANSPOSON CACTG ELEMENT RIM2-M59	transposon CACTG element Rim2-M59			1	AP002871: 110,338-120,216.	 Other						GO:0032196 - transposition		
16373	RIM2-M60	Rim2-M60	TRANSPOSON CACTG ELEMENT RIM2-M60	transposon CACTG element Rim2-M60			3	AC079853: 101,573-111,923.	 Other						GO:0032196 - transposition		
16374	RIM2-M61	Rim2-M61	TRANSPOSON CACTG ELEMENT RIM2-M61	transposon CACTG element Rim2-M61			1	AP002070: 156,234-166,598.	 Other						GO:0032196 - transposition		
16375	RIM2-M62	Rim2-M62	TRANSPOSON CACTG ELEMENT RIM2-M62	transposon CACTG element Rim2-M62			10	AC078944: 103,373-113,841.	 Other						GO:0032196 - transposition		
16376	RIM2-M63	Rim2-M63	TRANSPOSON CACTG ELEMENT RIM2-M63	transposon CACTG element Rim2-M63			1	AP002484: 15,795-26,339.	 Other						GO:0032196 - transposition		
16377	RIM2-M64	Rim2-M64	TRANSPOSON CACTG ELEMENT RIM2-M64	transposon CACTG element Rim2-M64			1	AP003207: 98,458-109,013.	 Other						GO:0032196 - transposition		
16378	RIM2-M65	Rim2-M65	TRANSPOSON CACTG ELEMENT RIM2-M65	transposon CACTG element Rim2-M65			3	AC079830: 118,450-129,206.	 Other						GO:0032196 - transposition		
16379	RIM2-M66	Rim2-M66	TRANSPOSON CACTG ELEMENT RIM2-M66	transposon CACTG element Rim2-M66			10	AC068654: 66,037-77,014.	 Other						GO:0032196 - transposition		
16380	RIM2-M67	Rim2-M67	TRANSPOSON CACTG ELEMENT RIM2-M67	transposon CACTG element Rim2-M67			1	AP003197: 52,024-63,128.	 Other						GO:0032196 - transposition		
16381	RIM2-M68	Rim2-M68	TRANSPOSON CACTG ELEMENT RIM2-M68	transposon CACTG element Rim2-M68			1	AC011806: 47,182-36,166.	 Other						GO:0032196 - transposition		
16382	RIM2-M69	Rim2-M69	TRANSPOSON CACTG ELEMENT RIM2-M69	transposon CACTG element Rim2-M69			1	AP003432: 114,271-125,423.	 Other						GO:0032196 - transposition		
16383	RIM2-M70	Rim2-M70	TRANSPOSON CACTG ELEMENT RIM2-M70	transposon CACTG element Rim2-M70			1	AP003709: 97,208-108,418.	 Other						GO:0032196 - transposition		
16384	RIM2-M71	Rim2-M71	TRANSPOSON CACTG ELEMENT RIM2-M71	transposon CACTG element Rim2-M71			10	AC091724: 16,971-28,245.	 Other						GO:0032196 - transposition		
16385	RIM2-M72	Rim2-M72	TRANSPOSON CACTG ELEMENT RIM2-M72	transposon CACTG element Rim2-M72			1	AP003020: 111,118-122,397.	 Other						GO:0032196 - transposition		
16386	RIM2-M73	Rim2-M73	TRANSPOSON CACTG ELEMENT RIM2-M73	transposon CACTG element Rim2-M73			1	AP003710: 14,676-25,961.	 Other						GO:0032196 - transposition		
16387	RIM2-M74	Rim2-M74	TRANSPOSON CACTG ELEMENT RIM2-M74	transposon CACTG element Rim2-M74			9	AC090056: 123,861-135,333.	 Other						GO:0032196 - transposition		
16388	RIM2-M75	Rim2-M75	TRANSPOSON CACTG ELEMENT RIM2-M75	transposon CACTG element Rim2-M75			1	AP003279: 22,798-35,291.	 Other						GO:0032196 - transposition		
16389	RIM2-M76	Rim2-M76	TRANSPOSON CACTG ELEMENT RIM2-M76	transposon CACTG element Rim2-M76			10	AC078948: 70,424-83,100.	 Other						GO:0032196 - transposition		
16390	RIM2-M77	Rim2-M77	TRANSPOSON CACTG ELEMENT RIM2-M77	transposon CACTG element Rim2-M77			10	AC079029: 51,198-64,904.	 Other						GO:0032196 - transposition		
16391	RIM2-M78	Rim2-M78	TRANSPOSON CACTG ELEMENT RIM2-M78	transposon CACTG element Rim2-M78			1	AP003435: 110,418-124,723.	 Other						GO:0032196 - transposition		
16392	RIM2-M79	Rim2-M79	TRANSPOSON CACTG ELEMENT RIM2-M79	transposon CACTG element Rim2-M79			1	AP003214: 59,465-73,773.	 Other						GO:0032196 - transposition		
16393	RIM2-M80	Rim2-M80	TRANSPOSON CACTG ELEMENT RIM2-M80	transposon CACTG element Rim2-M80			10	AC068654: 81,443-95,776.	 Other						GO:0032196 - transposition		
16394	RIM2-M81	Rim2-M81	TRANSPOSON CACTG ELEMENT RIM2-M81	transposon CACTG element Rim2-M81			10	AC090486: 146,647-162,110.	 Other						GO:0032196 - transposition		
16395	RIM2-M82	Rim2-M82	TRANSPOSON CACTG ELEMENT RIM2-M82	transposon CACTG element Rim2-M82			1	AP003021: 79,619-96,472.	 Other						GO:0032196 - transposition		
16396	RIM2-M83	Rim2-M83	TRANSPOSON CACTG ELEMENT RIM2-M83	transposon CACTG element Rim2-M83			1	AP003020: 32,808-50,845.	 Other						GO:0032196 - transposition		
16397	RIM2-M84	Rim2-M84	TRANSPOSON CACTG ELEMENT RIM2-M84	transposon CACTG element Rim2-M84			1	AP002968: 115,072-134,080.	 Other						GO:0032196 - transposition		
16398	RIM2-M85	Rim2-M85	TRANSPOSON CACTG ELEMENT RIM2-M85	transposon CACTG element Rim2-M85			1	AP003141: 109,786-130,143.	 Other						GO:0032196 - transposition		
16399	RIM2-M86	Rim2-M86	TRANSPOSON CACTG ELEMENT RIM2-M86	transposon CACTG element Rim2-M86			10	AC079852: 14,341-38,817.	 Other						GO:0032196 - transposition		
16400	RIM2-M87	Rim2-M87	TRANSPOSON CACTG ELEMENT RIM2-M87	transposon CACTG element Rim2-M87			1	AP003275: 92,758-118,197.	 Other						GO:0032196 - transposition		
16401	RIM2-M88	Rim2-M88	TRANSPOSON CACTG ELEMENT RIM2-M88	transposon CACTG element Rim2-M88			1	AP003215: 21,018-46,928.	 Other						GO:0032196 - transposition		
16402	RIM2-M89	Rim2-M89	TRANSPOSON CACTG ELEMENT RIM2-M89	transposon CACTG element Rim2-M89			1	AP002480: 78,554-104,838.	 Other						GO:0032196 - transposition		
16403	RIM2-M90	Rim2-M90	TRANSPOSON CACTG ELEMENT RIM2-M90	transposon CACTG element Rim2-M90			10	AC051624: 72,697-100,621.	 Other						GO:0032196 - transposition		
16404	RIM2-M91	Rim2-M91	TRANSPOSON CACTG ELEMENT RIM2-M91	transposon CACTG element Rim2-M91			1	AP003921: 27,409-59,195.	 Other						GO:0032196 - transposition		
16405	RIM2-M92	Rim2-M92	TRANSPOSON CACTG ELEMENT RIM2-M92	transposon CACTG element Rim2-M92			1	AP002860: 15,240-47,971.	 Other						GO:0032196 - transposition		
16406	RIM2-M93	Rim2-M93	TRANSPOSON CACTG ELEMENT RIM2-M93	transposon CACTG element Rim2-M93			10	AC078944: 15,597-51,214.	 Other						GO:0032196 - transposition		
16407	RIM2-M94	Rim2-M94	TRANSPOSON CACTG ELEMENT RIM2-M94	transposon CACTG element Rim2-M94			4	AL731633: 126,312-126,508.	 Other						GO:0032196 - transposition		
16408	RIM2-M95	Rim2-M95	TRANSPOSON CACTG ELEMENT RIM2-M95	transposon CACTG element Rim2-M95			4	AL606454: 43,709-44,130.	 Other						GO:0032196 - transposition		
16409	RIM2-M96	Rim2-M96	TRANSPOSON CACTG ELEMENT RIM2-M96	transposon CACTG element Rim2-M96			3	AC116426: 15,921-16,468.	 Other						GO:0032196 - transposition		
16410	RIM2-M97	Rim2-M97	TRANSPOSON CACTG ELEMENT RIM2-M97	transposon CACTG element Rim2-M97			7	AP003759: 102,732-103,281.	 Other						GO:0032196 - transposition		
16411	RIM2-M98	Rim2-M98	TRANSPOSON CACTG ELEMENT RIM2-M98	transposon CACTG element Rim2-M98			3	AC099732: 8,599-9,217.	 Other						GO:0032196 - transposition		
16412	RIM2-M99	Rim2-M99	TRANSPOSON CACTG ELEMENT RIM2-M99	transposon CACTG element Rim2-M99			4	AL606450: 32,232-32,865.	 Other						GO:0032196 - transposition		
16413	RIM2-M100	Rim2-M100	TRANSPOSON CACTG ELEMENT RIM2-M100	transposon CACTG element Rim2-M100			4	AL606994: 93,451-94,132.	 Other						GO:0032196 - transposition		
16414	RIM2-M101	Rim2-M101	TRANSPOSON CACTG ELEMENT RIM2-M101	transposon CACTG element Rim2-M101			4	AL606616: 16,906-17,649.	 Other						GO:0032196 - transposition		
16415	RIM2-M102	Rim2-M102	TRANSPOSON CACTG ELEMENT RIM2-M102	transposon CACTG element Rim2-M102			4	AL731592: 1,284-2,058.	 Other						GO:0032196 - transposition		
16416	RIM2-M103	Rim2-M103	TRANSPOSON CACTG ELEMENT RIM2-M103	transposon CACTG element Rim2-M103			3	AC105729: 116,397-117,247.	 Other						GO:0032196 - transposition		
16417	RIM2-M104	Rim2-M104	TRANSPOSON CACTG ELEMENT RIM2-M104	transposon CACTG element Rim2-M104			4	AL662994: 87,820-88,682.	 Other						GO:0032196 - transposition		
16418	RIM2-M105	Rim2-M105	TRANSPOSON CACTG ELEMENT RIM2-M105	transposon CACTG element Rim2-M105			10	AC069300: 79,682-80,577.	 Other						GO:0032196 - transposition		
16419	RIM2-M106	Rim2-M106	TRANSPOSON CACTG ELEMENT RIM2-M106	transposon CACTG element Rim2-M106			4	AL662972: 89,273-90,173.	 Other						GO:0032196 - transposition		
16420	RIM2-M107	Rim2-M107	TRANSPOSON CACTG ELEMENT RIM2-M107	transposon CACTG element Rim2-M107			1	AP003229: 125,813-126,716.	 Other						GO:0032196 - transposition		
16421	RIM2-M108	Rim2-M108	TRANSPOSON CACTG ELEMENT RIM2-M108	transposon CACTG element Rim2-M108			10	AC084884: 51,472-52,408.	 Other						GO:0032196 - transposition		
16422	RIM2-M109	Rim2-M109	TRANSPOSON CACTG ELEMENT RIM2-M109	transposon CACTG element Rim2-M109			4	AL663008: 113,437-114,383.	 Other						GO:0032196 - transposition		
16423	RIM2-M110	Rim2-M110	TRANSPOSON CACTG ELEMENT RIM2-M110	transposon CACTG element Rim2-M110			1	AP003023: 54,640-55,603.	 Other						GO:0032196 - transposition		
16424	RIM2-M111	Rim2-M111	TRANSPOSON CACTG ELEMENT RIM2-M111	transposon CACTG element Rim2-M111			4	AL442110: 11,283-12,249.	 Other						GO:0032196 - transposition		
16425	RIM2-M112	Rim2-M112	TRANSPOSON CACTG ELEMENT RIM2-M112	transposon CACTG element Rim2-M112			10	AC027662: 95,664-96,631.	 Other						GO:0032196 - transposition		
16426	RIM2-M113	Rim2-M113	TRANSPOSON CACTG ELEMENT RIM2-M113	transposon CACTG element Rim2-M113			4	AL663018: 22,586-23,556.	 Other						GO:0032196 - transposition		
16427	RIM2-M114	Rim2-M114	TRANSPOSON CACTG ELEMENT RIM2-M114	transposon CACTG element Rim2-M114			1	AP003208: 82,905-83,885.	 Other						GO:0032196 - transposition		
16428	RIM2-M115	Rim2-M115	TRANSPOSON CACTG ELEMENT RIM2-M115	transposon CACTG element Rim2-M115			7	AP003815: 58,808-59,792.	 Other						GO:0032196 - transposition		
16429	RIM2-M116	Rim2-M116	TRANSPOSON CACTG ELEMENT RIM2-M116	transposon CACTG element Rim2-M116			1	AP004232: 35,413-36,408.	 Other						GO:0032196 - transposition		
16430	RIM2-M117	Rim2-M117	TRANSPOSON CACTG ELEMENT RIM2-M117	transposon CACTG element Rim2-M117			4	AL731591: 107,115-108,117.	 Other						GO:0032196 - transposition		
16431	RIM2-M118	Rim2-M118	TRANSPOSON CACTG ELEMENT RIM2-M118	transposon CACTG element Rim2-M118			1	AP001081: 68,422-69,426.	 Other						GO:0032196 - transposition		
16432	RIM2-M119	Rim2-M119	TRANSPOSON CACTG ELEMENT RIM2-M119	transposon CACTG element Rim2-M119			7	AP005194: 88,010-89,020.	 Other						GO:0032196 - transposition		
16433	RIM2-M120	Rim2-M120	TRANSPOSON CACTG ELEMENT RIM2-M120	transposon CACTG element Rim2-M120			1	AP004225: 138,446-139,458.	 Other						GO:0032196 - transposition		
16434	RIM2-M121	Rim2-M121	TRANSPOSON CACTG ELEMENT RIM2-M121	transposon CACTG element Rim2-M121			1	AP002868: 83,166-84,189.	 Other						GO:0032196 - transposition		
16435	RIM2-M122	Rim2-M122	TRANSPOSON CACTG ELEMENT RIM2-M122	transposon CACTG element Rim2-M122			1	AP003053: 54,222-55,246.	 Other						GO:0032196 - transposition		
16436	RIM2-M123	Rim2-M123	TRANSPOSON CACTG ELEMENT RIM2-M123	transposon CACTG element Rim2-M123			1	AP003238: 58,569-59,593.	 Other						GO:0032196 - transposition		
16437	RIM2-M124	Rim2-M124	TRANSPOSON CACTG ELEMENT RIM2-M124	transposon CACTG element Rim2-M124			7	AP003806: 90,458-91,490.	 Other						GO:0032196 - transposition		
16438	RIM2-M125	Rim2-M125	TRANSPOSON CACTG ELEMENT RIM2-M125	transposon CACTG element Rim2-M125			4	AL662991: 51,224-52,260.	 Other						GO:0032196 - transposition		
16439	RIM2-M126	Rim2-M126	TRANSPOSON CACTG ELEMENT RIM2-M126	transposon CACTG element Rim2-M126			10	AC027660: 46,317-47,360.	 Other						GO:0032196 - transposition		
16440	RIM2-M127	Rim2-M127	TRANSPOSON CACTG ELEMENT RIM2-M127	transposon CACTG element Rim2-M127			1	AP003141: 30,940-31,983.	 Other						GO:0032196 - transposition		
16441	RIM2-M128	Rim2-M128	TRANSPOSON CACTG ELEMENT RIM2-M128	transposon CACTG element Rim2-M128			9	AC090056: 92,619-93,663.	 Other						GO:0032196 - transposition		
16442	RIM2-M129	Rim2-M129	TRANSPOSON CACTG ELEMENT RIM2-M129	transposon CACTG element Rim2-M129			4	AL606442: 27,810-28,854.	 Other						GO:0032196 - transposition		
16443	RIM2-M130	Rim2-M130	TRANSPOSON CACTG ELEMENT RIM2-M130	transposon CACTG element Rim2-M130			4	AL606592: 88,461-89,509.	 Other						GO:0032196 - transposition		
16444	RIM2-M131	Rim2-M131	TRANSPOSON CACTG ELEMENT RIM2-M131	transposon CACTG element Rim2-M131			1	AP002972: 59,526-60,573.	 Other						GO:0032196 - transposition		
16445	RIM2-M132	Rim2-M132	TRANSPOSON CACTG ELEMENT RIM2-M132	transposon CACTG element Rim2-M132			4	AL606997: 61,933-62,983.	 Other						GO:0032196 - transposition		
16446	RIM2-M133	Rim2-M133	TRANSPOSON CACTG ELEMENT RIM2-M133	transposon CACTG element Rim2-M133			1	AP003852: 75,652-76,704.	 Other						GO:0032196 - transposition		
16447	RIM2-M134	Rim2-M134	TRANSPOSON CACTG ELEMENT RIM2-M134	transposon CACTG element Rim2-M134			10	AC090487: 41,977-43,030.	 Other						GO:0032196 - transposition		
16448	RIM2-M135	Rim2-M135	TRANSPOSON CACTG ELEMENT RIM2-M135	transposon CACTG element Rim2-M135			3	AC083942: 9,501-10,555.	 Other						GO:0032196 - transposition		
16449	RIM2-M136	Rim2-M136	TRANSPOSON CACTG ELEMENT RIM2-M136	transposon CACTG element Rim2-M136			1	AP003722: 24,502-25,556.	 Other						GO:0032196 - transposition		
16450	RIM2-M137	Rim2-M137	TRANSPOSON CACTG ELEMENT RIM2-M137	transposon CACTG element Rim2-M137			1	AP003278: 76,684-77,741.	 Other						GO:0032196 - transposition		
16451	RIM2-M138	Rim2-M138	TRANSPOSON CACTG ELEMENT RIM2-M138	transposon CACTG element Rim2-M138			4	AL662965: 93,691-94,749.	 Other						GO:0032196 - transposition		
16452	RIM2-M139	Rim2-M139	TRANSPOSON CACTG ELEMENT RIM2-M139	transposon CACTG element Rim2-M139			4	AL606443: 76,603-77,665.	 Other						GO:0032196 - transposition		
16453	RIM2-M140	Rim2-M140	TRANSPOSON CACTG ELEMENT RIM2-M140	transposon CACTG element Rim2-M140			1	AP003855: 119,028-120,089.	 Other						GO:0032196 - transposition		
16454	RIM2-M141	Rim2-M141	TRANSPOSON CACTG ELEMENT RIM2-M141	transposon CACTG element Rim2-M141			1	AP003432: 96,678-97,743.	 Other						GO:0032196 - transposition		
16455	RIM2-M142	Rim2-M142	TRANSPOSON CACTG ELEMENT RIM2-M142	transposon CACTG element Rim2-M142			4	AL606620: 64,718-65,785.	 Other						GO:0032196 - transposition		
16456	RIM2-M143	Rim2-M143	TRANSPOSON CACTG ELEMENT RIM2-M143	transposon CACTG element Rim2-M143			10	AC025783: 153,092-154,160.	 Other						GO:0032196 - transposition		
16457	RIM2-M144	Rim2-M144	TRANSPOSON CACTG ELEMENT RIM2-M144	transposon CACTG element Rim2-M144			7	AP005178: 127,148-128,220.	 Other						GO:0032196 - transposition		
16458	RIM2-M145	Rim2-M145	TRANSPOSON CACTG ELEMENT RIM2-M145	transposon CACTG element Rim2-M145			3	AP000615: 87,698-88,773.	 Other						GO:0032196 - transposition		
16459	RIM2-M146	Rim2-M146	TRANSPOSON CACTG ELEMENT RIM2-M146	transposon CACTG element Rim2-M146			4	AF480497: 63,336-64,413.	 Other						GO:0032196 - transposition		
16460	RIM2-M147	Rim2-M147	TRANSPOSON CACTG ELEMENT RIM2-M147	transposon CACTG element Rim2-M147			1	AP003409: 48,039-49,116.	 Other						GO:0032196 - transposition		
16461	RIM2-M148	Rim2-M148	TRANSPOSON CACTG ELEMENT RIM2-M148	transposon CACTG element Rim2-M148			1	AP003255: 110,632-111,712.	 Other						GO:0032196 - transposition		
16462	RIM2-M149	Rim2-M149	TRANSPOSON CACTG ELEMENT RIM2-M149	transposon CACTG element Rim2-M149			7	AP003740: 18,894-19,975.	 Other						GO:0032196 - transposition		
16463	RIM2-M150	Rim2-M150	TRANSPOSON CACTG ELEMENT RIM2-M150	transposon CACTG element Rim2-M150			1	AP000837: 129,054-130,135.	 Other						GO:0032196 - transposition		
16464	RIM2-M151	Rim2-M151	TRANSPOSON CACTG ELEMENT RIM2-M151	transposon CACTG element Rim2-M151			4	AL606635: 111,118-112,202.	 Other						GO:0032196 - transposition		
16465	RIM2-M152	Rim2-M152	TRANSPOSON CACTG ELEMENT RIM2-M152	transposon CACTG element Rim2-M152			3	AC079853: 18,553-19,643.	 Other						GO:0032196 - transposition		
16466	RIM2-M153	Rim2-M153	TRANSPOSON CACTG ELEMENT RIM2-M153	transposon CACTG element Rim2-M153			3	AC079887: 137,536-138,625.	 Other						GO:0032196 - transposition		
16467	RIM2-M154	Rim2-M154	TRANSPOSON CACTG ELEMENT RIM2-M154	transposon CACTG element Rim2-M154			9	AC090054: 104,072-105,161.	 Other						GO:0032196 - transposition		
16468	RIM2-M155	Rim2-M155	TRANSPOSON CACTG ELEMENT RIM2-M155	transposon CACTG element Rim2-M155			10	AC087544: 53,945-55,048.	 Other						GO:0032196 - transposition		
16469	RIM2-M156	Rim2-M156	TRANSPOSON CACTG ELEMENT RIM2-M156	transposon CACTG element Rim2-M156			10	AC087549: 97,140-98,245.	 Other						GO:0032196 - transposition		
16470	RIM2-M157	Rim2-M157	TRANSPOSON CACTG ELEMENT RIM2-M157	transposon CACTG element Rim2-M157			7	AP004260: 47,470-48,574.	 Other						GO:0032196 - transposition		
16471	RIM2-M158	Rim2-M158	TRANSPOSON CACTG ELEMENT RIM2-M158	transposon CACTG element Rim2-M158			4	AL662981: 152,420-153,527.	 Other						GO:0032196 - transposition		
16472	RIM2-M159	Rim2-M159	TRANSPOSON CACTG ELEMENT RIM2-M159	transposon CACTG element Rim2-M159			10	AC098566: 66,894-68,002.	 Other						GO:0032196 - transposition		
16473	RIM2-M160	Rim2-M160	TRANSPOSON CACTG ELEMENT RIM2-M160	transposon CACTG element Rim2-M160			10	AC021892: 131,384-132,496.	 Other						GO:0032196 - transposition		
16474	RIM2-M161	Rim2-M161	TRANSPOSON CACTG ELEMENT RIM2-M161	transposon CACTG element Rim2-M161			10	AC074355: 52,631-53,747.	 Other						GO:0032196 - transposition		
16475	RIM2-M162	Rim2-M162	TRANSPOSON CACTG ELEMENT RIM2-M162	transposon CACTG element Rim2-M162			1	AP003223: 74,331-75,448.	 Other						GO:0032196 - transposition		
16476	RIM2-M163	Rim2-M163	TRANSPOSON CACTG ELEMENT RIM2-M163	transposon CACTG element Rim2-M163			2	AC083751: 20,563-21,683.	 Other						GO:0032196 - transposition		
16477	RIM2-M164	Rim2-M164	TRANSPOSON CACTG ELEMENT RIM2-M164	transposon CACTG element Rim2-M164			10	AC087723: 78,084-79,207.	 Other						GO:0032196 - transposition		
16478	RIM2-M165	Rim2-M165	TRANSPOSON CACTG ELEMENT RIM2-M165	transposon CACTG element Rim2-M165			1	AP004072: 146,702-147,827.	 Other						GO:0032196 - transposition		
16479	RIM2-M166	Rim2-M166	TRANSPOSON CACTG ELEMENT RIM2-M166	transposon CACTG element Rim2-M166			11	AC119072: 69,641-70,768.	 Other						GO:0032196 - transposition		
16480	RIM2-M167	Rim2-M167	TRANSPOSON CACTG ELEMENT RIM2-M167	transposon CACTG element Rim2-M167			10	AC093568: 73,289-74,415.	 Other						GO:0032196 - transposition		
16481	RIM2-M168	Rim2-M168	TRANSPOSON CACTG ELEMENT RIM2-M168	transposon CACTG element Rim2-M168			10	AC099400: 76,151-77,277.	 Other						GO:0032196 - transposition		
16482	RIM2-M169	Rim2-M169	TRANSPOSON CACTG ELEMENT RIM2-M169	transposon CACTG element Rim2-M169			1	AP003406: 127,014-128,143.	 Other						GO:0032196 - transposition		
16483	RIM2-M170	Rim2-M170	TRANSPOSON CACTG ELEMENT RIM2-M170	transposon CACTG element Rim2-M170			10	AC098566: 77,279-78,410.	 Other						GO:0032196 - transposition		
16484	RIM2-M171	Rim2-M171	TRANSPOSON CACTG ELEMENT RIM2-M171	transposon CACTG element Rim2-M171			1	AP004368: 24,975-26,107.	 Other						GO:0032196 - transposition		
16485	RIM2-M172	Rim2-M172	TRANSPOSON CACTG ELEMENT RIM2-M172	transposon CACTG element Rim2-M172			1	AP003333: 71,674-72,807.	 Other						GO:0032196 - transposition		
16486	RIM2-M173	Rim2-M173	TRANSPOSON CACTG ELEMENT RIM2-M173	transposon CACTG element Rim2-M173			10	AC021891: 8,794-9,927.	 Other						GO:0032196 - transposition		
16487	RIM2-M174	Rim2-M174	TRANSPOSON CACTG ELEMENT RIM2-M174	transposon CACTG element Rim2-M174			10	AC108884: 9,839-10,972.	 Other						GO:0032196 - transposition		
16488	RIM2-M175	Rim2-M175	TRANSPOSON CACTG ELEMENT RIM2-M175	transposon CACTG element Rim2-M175			1	AP003792: 41,845-42,977.	 Other						GO:0032196 - transposition		
16489	RIM2-M176	Rim2-M176	TRANSPOSON CACTG ELEMENT RIM2-M176	transposon CACTG element Rim2-M176			5	AC079022: 99,740-100,876.	 Other						GO:0032196 - transposition		
16490	RIM2-M177	Rim2-M177	TRANSPOSON CACTG ELEMENT RIM2-M177	transposon CACTG element Rim2-M177			1	AP003709: 73,708-74,851.	 Other						GO:0032196 - transposition		
16491	RIM2-M178	Rim2-M178	TRANSPOSON CACTG ELEMENT RIM2-M178	transposon CACTG element Rim2-M178			10	AC113335: 70,545-71,689.	 Other						GO:0032196 - transposition		
16492	RIM2-M179	Rim2-M179	TRANSPOSON CACTG ELEMENT RIM2-M179	transposon CACTG element Rim2-M179			4	AL606990: 30,668-31,813.	 Other						GO:0032196 - transposition		
16493	RIM2-M180	Rim2-M180	TRANSPOSON CACTG ELEMENT RIM2-M180	transposon CACTG element Rim2-M180			3	AC118675: 31,548-32,694.	 Other						GO:0032196 - transposition		
16494	RIM2-M181	Rim2-M181	TRANSPOSON CACTG ELEMENT RIM2-M181	transposon CACTG element Rim2-M181			4	AL662991: 99,232-100,377.	 Other						GO:0032196 - transposition		
16495	RIM2-M182	Rim2-M182	TRANSPOSON CACTG ELEMENT RIM2-M182	transposon CACTG element Rim2-M182			7	AP005178: 44,415-45,561.	 Other						GO:0032196 - transposition		
16496	RIM2-M183	Rim2-M183	TRANSPOSON CACTG ELEMENT RIM2-M183	transposon CACTG element Rim2-M183			7	AP003740: 82,834-83,983.	 Other						GO:0032196 - transposition		
16497	RIM2-M184	Rim2-M184	TRANSPOSON CACTG ELEMENT RIM2-M184	transposon CACTG element Rim2-M184			4	AL663004: 25,459-26,610.	 Other						GO:0032196 - transposition		
16498	RIM2-M185	Rim2-M185	TRANSPOSON CACTG ELEMENT RIM2-M185	transposon CACTG element Rim2-M185			1	AP003293: 28,291-29,441.	 Other						GO:0032196 - transposition		
16499	RIM2-M186	Rim2-M186	TRANSPOSON CACTG ELEMENT RIM2-M186	transposon CACTG element Rim2-M186			3	AC115687: 90,382-91,535.	 Other						GO:0032196 - transposition		
16500	RIM2-M187	Rim2-M187	TRANSPOSON CACTG ELEMENT RIM2-M187	transposon CACTG element Rim2-M187			1	AP004253: 44,024-45,193.	 Other						GO:0032196 - transposition		
16501	RIM2-M188	Rim2-M188	TRANSPOSON CACTG ELEMENT RIM2-M188	transposon CACTG element Rim2-M188			7	AP005106: 48,257-49,411.	 Other						GO:0032196 - transposition		
16502	RIM2-M189	Rim2-M189	TRANSPOSON CACTG ELEMENT RIM2-M189	transposon CACTG element Rim2-M189			7	AP005465: 46,839-47,996.	 Other						GO:0032196 - transposition		
16503	RIM2-M190	Rim2-M190	TRANSPOSON CACTG ELEMENT RIM2-M190	transposon CACTG element Rim2-M190			4	AL731593: 18,552-19,717.	 Other						GO:0032196 - transposition		
16504	RIM2-M191	Rim2-M191	TRANSPOSON CACTG ELEMENT RIM2-M191	transposon CACTG element Rim2-M191			1	AP003560: 112,943-114,107.	 Other						GO:0032196 - transposition		
16505	RIM2-M192	Rim2-M192	TRANSPOSON CACTG ELEMENT RIM2-M192	transposon CACTG element Rim2-M192			10	AC108884: 62,618-63,790.	 Other						GO:0032196 - transposition		
16506	RIM2-M193	Rim2-M193	TRANSPOSON CACTG ELEMENT RIM2-M193	transposon CACTG element Rim2-M193			10	AC092172: 67,775-68,953.	 Other						GO:0032196 - transposition		
16507	RIM2-M194	Rim2-M194	TRANSPOSON CACTG ELEMENT RIM2-M194	transposon CACTG element Rim2-M194			4	AL606441: 20,446-21,624.	 Other						GO:0032196 - transposition		
16508	RIM2-M195	Rim2-M195	TRANSPOSON CACTG ELEMENT RIM2-M195	transposon CACTG element Rim2-M195			10	AC069324: 115,552-116,734.	 Other						GO:0032196 - transposition		
16509	RIM2-M196	Rim2-M196	TRANSPOSON CACTG ELEMENT RIM2-M196	transposon CACTG element Rim2-M196			1	AP002819: 101,134-102,234.	 Other						GO:0032196 - transposition		
16510	RIM2-M197	Rim2-M197	TRANSPOSON CACTG ELEMENT RIM2-M197	transposon CACTG element Rim2-M197			3	AC079830: 57,991-59,177.	 Other						GO:0032196 - transposition		
16511	RIM2-M198	Rim2-M198	TRANSPOSON CACTG ELEMENT RIM2-M198	transposon CACTG element Rim2-M198			2	AC083751: 116,916-118,106.	 Other						GO:0032196 - transposition		
16512	RIM2-M199	Rim2-M199	TRANSPOSON CACTG ELEMENT RIM2-M199	transposon CACTG element Rim2-M199			4	AL663004: 85,887-87,079.	 Other						GO:0032196 - transposition		
16513	RIM2-M200	Rim2-M200	TRANSPOSON CACTG ELEMENT RIM2-M200	transposon CACTG element Rim2-M200			11	AC109645: 14,421-15,615.	 Other						GO:0032196 - transposition		
16514	RIM2-M201	Rim2-M201	TRANSPOSON CACTG ELEMENT RIM2-M201	transposon CACTG element Rim2-M201			7	AP004266: 66,690-67,884.	 Other						GO:0032196 - transposition		
16515	RIM2-M202	Rim2-M202	TRANSPOSON CACTG ELEMENT RIM2-M202	transposon CACTG element Rim2-M202			5	AC079022: 94,152-95,349.	 Other						GO:0032196 - transposition		
16516	RIM2-M203	Rim2-M203	TRANSPOSON CACTG ELEMENT RIM2-M203	transposon CACTG element Rim2-M203			4	AL731599: 143,416-144,614.	 Other						GO:0032196 - transposition		
16517	RIM2-M204	Rim2-M204	TRANSPOSON CACTG ELEMENT RIM2-M204	transposon CACTG element Rim2-M204			7	AP003746: 100,514-101,713.	 Other						GO:0032196 - transposition		
16518	RIM2-M205	Rim2-M205	TRANSPOSON CACTG ELEMENT RIM2-M205	transposon CACTG element Rim2-M205			1	AP003934: 29,315-30,521.	 Other						GO:0032196 - transposition		
16519	RIM2-M206	Rim2-M206	TRANSPOSON CACTG ELEMENT RIM2-M206	transposon CACTG element Rim2-M206			1	AP003296: 18,583-19,791.	 Other						GO:0032196 - transposition		
16520	RIM2-M207	Rim2-M207	TRANSPOSON CACTG ELEMENT RIM2-M207	transposon CACTG element Rim2-M207			1	AP003242: 12,788-13,997.	 Other						GO:0032196 - transposition		
16521	RIM2-M208	Rim2-M208	TRANSPOSON CACTG ELEMENT RIM2-M208	transposon CACTG element Rim2-M208			1	AP003417: 102,937-104,148.	 Other						GO:0032196 - transposition		
16522	RIM2-M209	Rim2-M209	TRANSPOSON CACTG ELEMENT RIM2-M209	transposon CACTG element Rim2-M209			1	AP002872: 47,233-48,446.	 Other						GO:0032196 - transposition		
16523	RIM2-M210	Rim2-M210	TRANSPOSON CACTG ELEMENT RIM2-M210	transposon CACTG element Rim2-M210			3	AC107315: 102,746-103,963.	 Other						GO:0032196 - transposition		
16524	RIM2-M211	Rim2-M211	TRANSPOSON CACTG ELEMENT RIM2-M211	transposon CACTG element Rim2-M211			1	AP003414: 97,467-98,690.	 Other						GO:0032196 - transposition		
16525	RIM2-M212	Rim2-M212	TRANSPOSON CACTG ELEMENT RIM2-M212	transposon CACTG element Rim2-M212			7	AP004380: 109,999-111,220.	 Other						GO:0032196 - transposition		
16526	RIM2-M213	Rim2-M213	TRANSPOSON CACTG ELEMENT RIM2-M213	transposon CACTG element Rim2-M213			10	AC091666: 58,400-59,723.	 Other						GO:0032196 - transposition		
16527	RIM2-M214	Rim2-M214	TRANSPOSON CACTG ELEMENT RIM2-M214	transposon CACTG element Rim2-M214			3	AC104179: 70,281-71,504.	 Other						GO:0032196 - transposition		
16528	RIM2-M215	Rim2-M215	TRANSPOSON CACTG ELEMENT RIM2-M215	transposon CACTG element Rim2-M215			1	AP003246: 168,024-169,247.	 Other						GO:0032196 - transposition		
16529	RIM2-M216	Rim2-M216	TRANSPOSON CACTG ELEMENT RIM2-M216	transposon CACTG element Rim2-M216			4	AL606443: 115,069-116,296.	 Other						GO:0032196 - transposition		
16530	RIM2-M217	Rim2-M217	TRANSPOSON CACTG ELEMENT RIM2-M217	transposon CACTG element Rim2-M217			1	AP002820: 118,322-120,422.	 Other						GO:0032196 - transposition		
16531	RIM2-M218	Rim2-M218	TRANSPOSON CACTG ELEMENT RIM2-M218	transposon CACTG element Rim2-M218			1	AP003760: 60,233-61,460.	 Other						GO:0032196 - transposition		
16532	RIM2-M219	Rim2-M219	TRANSPOSON CACTG ELEMENT RIM2-M219	transposon CACTG element Rim2-M219			4	AL662983: 69,865-71,096.	 Other						GO:0032196 - transposition		
16533	RIM2-M220	Rim2-M220	TRANSPOSON CACTG ELEMENT RIM2-M220	transposon CACTG element Rim2-M220			4	AL606604: 60,938-62,172.	 Other						GO:0032196 - transposition		
16534	RIM2-M221	Rim2-M221	TRANSPOSON CACTG ELEMENT RIM2-M221	transposon CACTG element Rim2-M221			4	AL662956: 47,404-48,655.	 Other						GO:0032196 - transposition		
16535	RIM2-M222	Rim2-M222	TRANSPOSON CACTG ELEMENT RIM2-M222	transposon CACTG element Rim2-M222			4	AL731633: 21,314-22,571.	 Other						GO:0032196 - transposition		
16536	RIM2-M223	Rim2-M223	TRANSPOSON CACTG ELEMENT RIM2-M223	transposon CACTG element Rim2-M223			7	AP005051: 55,855-57,114.	 Other						GO:0032196 - transposition		
16537	RIM2-M224	Rim2-M224	TRANSPOSON CACTG ELEMENT RIM2-M224	transposon CACTG element Rim2-M224			1	AP003276: 73,683-74,947.	 Other						GO:0032196 - transposition		
16538	RIM2-M225	Rim2-M225	TRANSPOSON CACTG ELEMENT RIM2-M225	transposon CACTG element Rim2-M225			1	AP003921: 110,583-111,849.	 Other						GO:0032196 - transposition		
16539	RIM2-M226	Rim2-M226	TRANSPOSON CACTG ELEMENT RIM2-M226	transposon CACTG element Rim2-M226			10	AC099734: 74,252-75,519.	 Other						GO:0032196 - transposition		
16540	RIM2-M227	Rim2-M227	TRANSPOSON CACTG ELEMENT RIM2-M227	transposon CACTG element Rim2-M227			4	AL662934: 44,833-4,613.	 Other						GO:0032196 - transposition		
16541	RIM2-M228	Rim2-M228	TRANSPOSON CACTG ELEMENT RIM2-M228	transposon CACTG element Rim2-M228			4	AL662966: 64,526-65,826.	 Other						GO:0032196 - transposition		
16542	RIM2-M229	Rim2-M229	TRANSPOSON CACTG ELEMENT RIM2-M229	transposon CACTG element Rim2-M229			7	AP003850: 12,903-14,229.	 Other						GO:0032196 - transposition		
16543	RIM2-M230	Rim2-M230	TRANSPOSON CACTG ELEMENT RIM2-M230	transposon CACTG element Rim2-M230			1	AP003329: 8,078-9,415.	 Other						GO:0032196 - transposition		
16544	RIM2-M231	Rim2-M231	TRANSPOSON CACTG ELEMENT RIM2-M231	transposon CACTG element Rim2-M231			10	AC091665: 25,081-26,421.	 Other						GO:0032196 - transposition		
16545	RIM2-M232	Rim2-M232	TRANSPOSON CACTG ELEMENT RIM2-M232	transposon CACTG element Rim2-M232			4	AL662976: 70,165-71,514.	 Other						GO:0032196 - transposition		
16546	RIM2-M233	Rim2-M233	TRANSPOSON CACTG ELEMENT RIM2-M233	transposon CACTG element Rim2-M233			7	AP005486: 89,172-90,531.	 Other						GO:0032196 - transposition		
16547	RIM2-M234	Rim2-M234	TRANSPOSON CACTG ELEMENT RIM2-M234	transposon CACTG element Rim2-M234			4	AL606729: 53,319-54,690.	 Other						GO:0032196 - transposition		
16548	RIM2-M235	Rim2-M235	TRANSPOSON CACTG ELEMENT RIM2-M235	transposon CACTG element Rim2-M235			4	AL606448: 132,564-133,937.	 Other						GO:0032196 - transposition		
16549	RIM2-M236	Rim2-M236	TRANSPOSON CACTG ELEMENT RIM2-M236	transposon CACTG element Rim2-M236			1	AP003335: 154,314-155,690.	 Other						GO:0032196 - transposition		
16550	RIM2-M237	Rim2-M237	TRANSPOSON CACTG ELEMENT RIM2-M237	transposon CACTG element Rim2-M237			7	AP004272: 96,887-98,274.	 Other						GO:0032196 - transposition		
16551	RIM2-M238	Rim2-M238	TRANSPOSON CACTG ELEMENT RIM2-M238	transposon CACTG element Rim2-M238			1	AP003229: 128,499-129,887.	 Other						GO:0032196 - transposition		
16552	RIM2-M239	Rim2-M239	TRANSPOSON CACTG ELEMENT RIM2-M239	transposon CACTG element Rim2-M239			1	AP003333: 104,271-105,663.	 Other						GO:0032196 - transposition		
16553	RIM2-M240	Rim2-M240	TRANSPOSON CACTG ELEMENT RIM2-M240	transposon CACTG element Rim2-M240			4	AL606651: 64,512-65,906.	 Other						GO:0032196 - transposition		
16554	RIM2-M241	Rim2-M241	TRANSPOSON CACTG ELEMENT RIM2-M241	transposon CACTG element Rim2-M241			4	AL606627: 150,228-151,703.	 Other						GO:0032196 - transposition		
16555	RIM2-M242	Rim2-M242	TRANSPOSON CACTG ELEMENT RIM2-M242	transposon CACTG element Rim2-M242			2	AF480496: 128,218-129,697.	 Other						GO:0032196 - transposition		
16556	RIM2-M243	Rim2-M243	TRANSPOSON CACTG ELEMENT RIM2-M243	transposon CACTG element Rim2-M243			10	AC027658: 60,094-61,574.	 Other						GO:0032196 - transposition		
16557	RIM2-M244	Rim2-M244	TRANSPOSON CACTG ELEMENT RIM2-M244	transposon CACTG element Rim2-M244			1	AP003196: 21,831-23,341.	 Other						GO:0032196 - transposition		
16558	RIM2-M245	Rim2-M245	TRANSPOSON CACTG ELEMENT RIM2-M245	transposon CACTG element Rim2-M245			2	AC083751: 146,300-148,087.	 Other						GO:0032196 - transposition		
16559	RIM2-M246	Rim2-M246	TRANSPOSON CACTG ELEMENT RIM2-M246	transposon CACTG element Rim2-M246			10	AC087599: 84,428-86,614.	 Other						GO:0032196 - transposition		
16560	RIM2-M247	Rim2-M247	TRANSPOSON CACTG ELEMENT RIM2-M247	transposon CACTG element Rim2-M247			4	AL662991: 7,902-10,350.	 Other						GO:0032196 - transposition		
16561	RIM2-M248	Rim2-M248	TRANSPOSON CACTG ELEMENT RIM2-M248	transposon CACTG element Rim2-M248			10	AC113336: 8,023-10,524.	 Other						GO:0032196 - transposition		
16562	RIM2-M249	Rim2-M249	TRANSPOSON CACTG ELEMENT RIM2-M249	transposon CACTG element Rim2-M249			1	AP003220: 29,200-32,071.	 Other						GO:0032196 - transposition		
16563	RIM2-M250	Rim2-M250	TRANSPOSON CACTG ELEMENT RIM2-M250	transposon CACTG element Rim2-M250			1	AP003536: 17,615-20,490.	 Other						GO:0032196 - transposition		
16564	RIM2-M251	Rim2-M251	TRANSPOSON CACTG ELEMENT RIM2-M251	transposon CACTG element Rim2-M251			1	AP003260: 40,086-43,971.	 Other						GO:0032196 - transposition		
16565	RIM2-M252	Rim2-M252	TRANSPOSON CACTG ELEMENT RIM2-M252	transposon CACTG element Rim2-M252			10	AC090873: 96,694-100,457.	 Other						GO:0032196 - transposition		
16566	RIM2-M253	Rim2-M253	TRANSPOSON CACTG ELEMENT RIM2-M253	transposon CACTG element Rim2-M253			10	AC115686: 97,619-101,819.	 Other						GO:0032196 - transposition		
16567	RIM2-M254	Rim2-M254	TRANSPOSON CACTG ELEMENT RIM2-M254	transposon CACTG element Rim2-M254			4	AL662951: 6,730-10,960.	 Other						GO:0032196 - transposition		
16568	RIM2-M255	Rim2-M255	TRANSPOSON CACTG ELEMENT RIM2-M255	transposon CACTG element Rim2-M255			1	AP003563: 70,330-74,750.	 Other						GO:0032196 - transposition		
16569	RIM2-M256	Rim2-M256	TRANSPOSON CACTG ELEMENT RIM2-M256	transposon CACTG element Rim2-M256			4	AL662960: 168,903-173,526.	 Other						GO:0032196 - transposition		
16570	RIM2-M257	Rim2-M257	TRANSPOSON CACTG ELEMENT RIM2-M257	transposon CACTG element Rim2-M257			10	AC099774: 56,151-60,825.	 Other						GO:0032196 - transposition		
16571	RIM2-M258	Rim2-M258	TRANSPOSON CACTG ELEMENT RIM2-M258	transposon CACTG element Rim2-M258			1	AP003856: 40,005-45,254.	 Other						GO:0032196 - transposition		
16572	RIM2-M259	Rim2-M259	TRANSPOSON CACTG ELEMENT RIM2-M259	transposon CACTG element Rim2-M259			10	AC090873: 14,599-19,902.	 Other						GO:0032196 - transposition		
16573	RIM2-M260	Rim2-M260	TRANSPOSON CACTG ELEMENT RIM2-M260	transposon CACTG element Rim2-M260			1	AP002483: 14,728-20,078.	 Other						GO:0032196 - transposition		
16574	RIM2-M261	Rim2-M261	TRANSPOSON CACTG ELEMENT RIM2-M261	transposon CACTG element Rim2-M261			4	AL606613: 15,054-151,703.	 Other						GO:0032196 - transposition		
16575	RIM2-M262	Rim2-M262	TRANSPOSON CACTG ELEMENT RIM2-M262	transposon CACTG element Rim2-M262			7	AP003745: 7,225-14,730.	 Other						GO:0032196 - transposition		
16576	RIM2-M263	Rim2-M263	TRANSPOSON CACTG ELEMENT RIM2-M263	transposon CACTG element Rim2-M263			4	AL662966: 11,2640-120,311.	 Other						GO:0032196 - transposition		
16577	RIM2-M264	Rim2-M264	TRANSPOSON CACTG ELEMENT RIM2-M264	transposon CACTG element Rim2-M264			1	AP003536: 115,404-123,843.	 Other						GO:0032196 - transposition		
16578	RIM2-M265	Rim2-M265	TRANSPOSON CACTG ELEMENT RIM2-M265	transposon CACTG element Rim2-M265			7	AP003847: 37,092-45,937.	 Other						GO:0032196 - transposition		
16579	RIM2-M266	Rim2-M266	TRANSPOSON CACTG ELEMENT RIM2-M266	transposon CACTG element Rim2-M266			4	AL606990: 34,665-43,552.	 Other						GO:0032196 - transposition		
16580	RIM2-M267	Rim2-M267	TRANSPOSON CACTG ELEMENT RIM2-M267	transposon CACTG element Rim2-M267			4	AL662974: 67,157-76,269.	 Other						GO:0032196 - transposition		
16581	RIM2-M268	Rim2-M268	TRANSPOSON CACTG ELEMENT RIM2-M268	transposon CACTG element Rim2-M268			10	AC093178: 79,086-88,562.	 Other						GO:0032196 - transposition		
16582	RIM2-M269	Rim2-M269	TRANSPOSON CACTG ELEMENT RIM2-M269	transposon CACTG element Rim2-M269			1	AP004641: 8,171-17,669.	 Other						GO:0032196 - transposition		
16583	RIM2-M270	Rim2-M270	TRANSPOSON CACTG ELEMENT RIM2-M270	transposon CACTG element Rim2-M270			1	AP003856: 28,401-37,985.	 Other						GO:0032196 - transposition		
16584	RIM2-M271	Rim2-M271	TRANSPOSON CACTG ELEMENT RIM2-M271	transposon CACTG element Rim2-M271			4	AL606997: 43,950-53,821.	 Other						GO:0032196 - transposition		
16585	RIM2-M272	Rim2-M272	TRANSPOSON CACTG ELEMENT RIM2-M272	transposon CACTG element Rim2-M272			4	AL662966: 96,231-106,213.	 Other						GO:0032196 - transposition		
16586	RIM2-M273	Rim2-M273	TRANSPOSON CACTG ELEMENT RIM2-M273	transposon CACTG element Rim2-M273			10	AC113336: 123,806-133,818.	 Other						GO:0032196 - transposition		
16587	RIM2-M274	Rim2-M274	TRANSPOSON CACTG ELEMENT RIM2-M274	transposon CACTG element Rim2-M274			1	AP003578: 126,041-136,197.	 Other						GO:0032196 - transposition		
16588	RIM2-M275	Rim2-M275	TRANSPOSON CACTG ELEMENT RIM2-M275	transposon CACTG element Rim2-M275			4	AL662966: 81,551-91,765.	 Other						GO:0032196 - transposition		
16589	RIM2-M276	Rim2-M276	TRANSPOSON CACTG ELEMENT RIM2-M276	transposon CACTG element Rim2-M276			4	AL606654: 43,380-53,843.	 Other						GO:0032196 - transposition		
16590	RIM2-M277	Rim2-M277	TRANSPOSON CACTG ELEMENT RIM2-M277	transposon CACTG element Rim2-M277			3	AF377947: 118,445-128,996.	 Other						GO:0032196 - transposition		
16591	RIM2-M278	Rim2-M278	TRANSPOSON CACTG ELEMENT RIM2-M278	transposon CACTG element Rim2-M278			1	AP003312: 8,578-19,133.	 Other						GO:0032196 - transposition		
16592	RIM2-M279	Rim2-M279	TRANSPOSON CACTG ELEMENT RIM2-M279	transposon CACTG element Rim2-M279			4	AL731609: 157,968-168,645.	 Other						GO:0032196 - transposition		
16593	RIM2-M280	Rim2-M280	TRANSPOSON CACTG ELEMENT RIM2-M280	transposon CACTG element Rim2-M280			10	AC083943: 118,893-129,592.	 Other						GO:0032196 - transposition		
16594	RIM2-M281	Rim2-M281	TRANSPOSON CACTG ELEMENT RIM2-M281	transposon CACTG element Rim2-M281			7	AP005479: 85,317-96,023.	 Other						GO:0032196 - transposition		
16595	RIM2-M282	Rim2-M282	TRANSPOSON CACTG ELEMENT RIM2-M282	transposon CACTG element Rim2-M282			4	AL662951: 75,783-86,524.	 Other						GO:0032196 - transposition		
16596	RIM2-M283	Rim2-M283	TRANSPOSON CACTG ELEMENT RIM2-M283	transposon CACTG element Rim2-M283			10	AC073392: 70,300-81,089	 Other						GO:0032196 - transposition		
16597	RIM2-M284	Rim2-M284	TRANSPOSON CACTG ELEMENT RIM2-M284	transposon CACTG element Rim2-M284			10	AC123594: 48,177-58,969.	 Other						GO:0032196 - transposition		
16598	RIM2-M285	Rim2-M285	TRANSPOSON CACTG ELEMENT RIM2-M285	transposon CACTG element Rim2-M285			4	AL662958: 65,811-76,647.	 Other						GO:0032196 - transposition		
16599	RIM2-M286	Rim2-M286	TRANSPOSON CACTG ELEMENT RIM2-M286	transposon CACTG element Rim2-M286			1	AP003536: 97,665-108,513.	 Other						GO:0032196 - transposition		
16600	RIM2-M287	Rim2-M287	TRANSPOSON CACTG ELEMENT RIM2-M287	transposon CACTG element Rim2-M287			1	AP003054: 83,382-94,263.	 Other						GO:0032196 - transposition		
16601	RIM2-M288	Rim2-M288	TRANSPOSON CACTG ELEMENT RIM2-M288	transposon CACTG element Rim2-M288			1	AP003407: 91,858-10,278.	 Other						GO:0032196 - transposition		
16602	RIM2-M289	Rim2-M289	TRANSPOSON CACTG ELEMENT RIM2-M289	transposon CACTG element Rim2-M289			4	AL662979: 30,187-41,143.	 Other						GO:0032196 - transposition		
16603	RIM2-M290	Rim2-M290	TRANSPOSON CACTG ELEMENT RIM2-M290	transposon CACTG element Rim2-M290			1	AP003215: 35,967-46,928.	 Other						GO:0032196 - transposition		
16604	RIM2-M291	Rim2-M291	TRANSPOSON CACTG ELEMENT RIM2-M291	transposon CACTG element Rim2-M291			4	AL663011: 78,813-89,779.	 Other						GO:0032196 - transposition		
16605	RIM2-M292	Rim2-M292	TRANSPOSON CACTG ELEMENT RIM2-M292	transposon CACTG element Rim2-M292			4	AL662958: 148,890-159,861.	 Other						GO:0032196 - transposition		
16606	RIM2-M293	Rim2-M293	TRANSPOSON CACTG ELEMENT RIM2-M293	transposon CACTG element Rim2-M293			4	AL731587: 127,455-138,432.	 Other						GO:0032196 - transposition		
16607	RIM2-M294	Rim2-M294	TRANSPOSON CACTG ELEMENT RIM2-M294	transposon CACTG element Rim2-M294			10	AC131967: 73,909-84,893.	 Other						GO:0032196 - transposition		
16608	RIM2-M295	Rim2-M295	TRANSPOSON CACTG ELEMENT RIM2-M295	transposon CACTG element Rim2-M295			1	AP003563: 101,336-112,344.	 Other						GO:0032196 - transposition		
16609	RIM2-M296	Rim2-M296	TRANSPOSON CACTG ELEMENT RIM2-M296	transposon CACTG element Rim2-M296			1	AP004359: 71,418-82,128.	 Other						GO:0032196 - transposition		
16610	RIM2-M297	Rim2-M297	TRANSPOSON CACTG ELEMENT RIM2-M297	transposon CACTG element Rim2-M297			1	AP004357: 115,254-126,266.	 Other						GO:0032196 - transposition		
16611	RIM2-M298	Rim2-M298	TRANSPOSON CACTG ELEMENT RIM2-M298	transposon CACTG element Rim2-M298			4	AL662999: 28,920-39,935.	 Other						GO:0032196 - transposition		
16612	RIM2-M299	Rim2-M299	TRANSPOSON CACTG ELEMENT RIM2-M299	transposon CACTG element Rim2-M299			4	AL662972: 63,123-74,152.	 Other						GO:0032196 - transposition		
16613	RIM2-M300	Rim2-M300	TRANSPOSON CACTG ELEMENT RIM2-M300	transposon CACTG element Rim2-M300			4	AL663018: 62,074-73,107.	 Other						GO:0032196 - transposition		
16614	RIM2-M301	Rim2-M301	TRANSPOSON CACTG ELEMENT RIM2-M301	transposon CACTG element Rim2-M301			4	AL606602: 113,554-124,590.	 Other						GO:0032196 - transposition		
16615	RIM2-M302	Rim2-M302	TRANSPOSON CACTG ELEMENT RIM2-M302	transposon CACTG element Rim2-M302			3	AC107619: 70,061-81,117.	 Other						GO:0032196 - transposition		
16616	RIM2-M303	Rim2-M303	TRANSPOSON CACTG ELEMENT RIM2-M303	transposon CACTG element Rim2-M303			1	AP004610: 55,768-66,838.	 Other						GO:0032196 - transposition		
16617	RIM2-M304	Rim2-M304	TRANSPOSON CACTG ELEMENT RIM2-M304	transposon CACTG element Rim2-M304			1	AP003236: 54,363-65,497.	 Other						GO:0032196 - transposition		
16618	RIM2-M305	Rim2-M305	TRANSPOSON CACTG ELEMENT RIM2-M305	transposon CACTG element Rim2-M305			7	AP003806: 2,728-13,864.	 Other						GO:0032196 - transposition		
16619	RIM2-M306	Rim2-M306	TRANSPOSON CACTG ELEMENT RIM2-M306	transposon CACTG element Rim2-M306			1	AP003215: 21,015-32,155.	 Other						GO:0032196 - transposition		
16620	RIM2-M307	Rim2-M307	TRANSPOSON CACTG ELEMENT RIM2-M307	transposon CACTG element Rim2-M307			1	AP003310: 1,264-12,416.	 Other						GO:0032196 - transposition		
16621	RIM2-M308	Rim2-M308	TRANSPOSON CACTG ELEMENT RIM2-M308	transposon CACTG element Rim2-M308			4	AL662985: 8,754-19,931.	 Other						GO:0032196 - transposition		
16622	RIM2-M309	Rim2-M309	TRANSPOSON CACTG ELEMENT RIM2-M309	transposon CACTG element Rim2-M309			7	AP005465: 6,218-17,402.	 Other						GO:0032196 - transposition		
16623	RIM2-M310	Rim2-M310	TRANSPOSON CACTG ELEMENT RIM2-M310	transposon CACTG element Rim2-M310			1	AP004614: 76,268-87,453.	 Other						GO:0032196 - transposition		
16624	RIM2-M311	Rim2-M311	TRANSPOSON CACTG ELEMENT RIM2-M311	transposon CACTG element Rim2-M311			1	AP003562: 25,312-36,504.	 Other						GO:0032196 - transposition		
16625	RIM2-M312	Rim2-M312	TRANSPOSON CACTG ELEMENT RIM2-M312	transposon CACTG element Rim2-M312			1	AP002873: 108,890-120,093.	 Other						GO:0032196 - transposition		
16626	RIM2-M313	Rim2-M313	TRANSPOSON CACTG ELEMENT RIM2-M313	transposon CACTG element Rim2-M313			1	AP003287: 87,882-99,118.	 Other						GO:0032196 - transposition		
16627	RIM2-M314	Rim2-M314	TRANSPOSON CACTG ELEMENT RIM2-M314	transposon CACTG element Rim2-M314			10	AC104615: 43,388-54,684.	 Other						GO:0032196 - transposition		
16628	RIM2-M315	Rim2-M315	TRANSPOSON CACTG ELEMENT RIM2-M315	transposon CACTG element Rim2-M315			7	AP005307: 81,400-92,718.	 Other						GO:0032196 - transposition		
16629	RIM2-M316	Rim2-M316	TRANSPOSON CACTG ELEMENT RIM2-M316	transposon CACTG element Rim2-M316			10	AC105746: 55,048-66,369.	 Other						GO:0032196 - transposition		
16630	RIM2-M317	Rim2-M317	TRANSPOSON CACTG ELEMENT RIM2-M317	transposon CACTG element Rim2-M317			4	AL731598: 19,136-30,573.	 Other						GO:0032196 - transposition		
16631	RIM2-M318	Rim2-M318	TRANSPOSON CACTG ELEMENT RIM2-M318	transposon CACTG element Rim2-M318			4	AL662974: 7,968-19,408.	 Other						GO:0032196 - transposition		
16632	RIM2-M319	Rim2-M319	TRANSPOSON CACTG ELEMENT RIM2-M319	transposon CACTG element Rim2-M319			4	AL606629: 39,618-51,108.	 Other						GO:0032196 - transposition		
16633	RIM2-M320	Rim2-M320	TRANSPOSON CACTG ELEMENT RIM2-M320	transposon CACTG element Rim2-M320			1	AP003333: 147,363-158,905.	 Other						GO:0032196 - transposition		
16634	RIM2-M321	Rim2-M321	TRANSPOSON CACTG ELEMENT RIM2-M321	transposon CACTG element Rim2-M321			4	AL662960: 78,303-89,972.	 Other						GO:0032196 - transposition		
16635	RIM2-M322	Rim2-M322	TRANSPOSON CACTG ELEMENT RIM2-M322	transposon CACTG element Rim2-M322			4	AL663018: 78,983-90,660.	 Other						GO:0032196 - transposition		
16636	RIM2-M323	Rim2-M323	TRANSPOSON CACTG ELEMENT RIM2-M323	transposon CACTG element Rim2-M323			10	AC131375: 103,501-115,367.	 Other						GO:0032196 - transposition		
16637	RIM2-M324	Rim2-M324	TRANSPOSON CACTG ELEMENT RIM2-M324	transposon CACTG element Rim2-M324			4	AL731631: 66,222-78,173.	 Other						GO:0032196 - transposition		
16638	RIM2-M325	Rim2-M325	TRANSPOSON CACTG ELEMENT RIM2-M325	transposon CACTG element Rim2-M325			1	AP004232: 11,031-22,982.	 Other						GO:0032196 - transposition		
16639	RIM2-M326	Rim2-M326	TRANSPOSON CACTG ELEMENT RIM2-M326	transposon CACTG element Rim2-M326			1	AP004223: 67,071-79,276.	 Other						GO:0032196 - transposition		
16640	RIM2-M327	Rim2-M327	TRANSPOSON CACTG ELEMENT RIM2-M327	transposon CACTG element Rim2-M327			4	AL731630: 89,067-101,459.	 Other						GO:0032196 - transposition		
16641	RIM2-M328	Rim2-M328	TRANSPOSON CACTG ELEMENT RIM2-M328	transposon CACTG element Rim2-M328			1	AP003298: 91,303-104,074.	 Other						GO:0032196 - transposition		
16642	RIM2-M329	Rim2-M329	TRANSPOSON CACTG ELEMENT RIM2-M329	transposon CACTG element Rim2-M329			10	AC116603: 104,939-118,950.	 Other						GO:0032196 - transposition		
16643	RIM2-M330	Rim2-M330	TRANSPOSON CACTG ELEMENT RIM2-M330	transposon CACTG element Rim2-M330			1	AP003018: 96,098-110,133.	 Other						GO:0032196 - transposition		
16644	RIM2-M331	Rim2-M331	TRANSPOSON CACTG ELEMENT RIM2-M331	transposon CACTG element Rim2-M331			10	AC104615: 57,580-71,871.	 Other						GO:0032196 - transposition		
16645	RIM2-M332	Rim2-M332	TRANSPOSON CACTG ELEMENT RIM2-M332	transposon CACTG element Rim2-M332			1	AP004232: 106,627-121,178.	 Other						GO:0032196 - transposition		
16646	RIM2-M333	Rim2-M333	TRANSPOSON CACTG ELEMENT RIM2-M333	transposon CACTG element Rim2-M333			1	AP003414: 31,860-46,485.	 Other						GO:0032196 - transposition		
16647	RIM2-M334	Rim2-M334	TRANSPOSON CACTG ELEMENT RIM2-M334	transposon CACTG element Rim2-M334			4	AL607002: 49,383-64,013.	 Other						GO:0032196 - transposition		
16648	RIM2-M335	Rim2-M335	TRANSPOSON CACTG ELEMENT RIM2-M335	transposon CACTG element Rim2-M335			10	AC104616: 95,497-110,309.	 Other						GO:0032196 - transposition		
16649	RIM2-M336	Rim2-M336	TRANSPOSON CACTG ELEMENT RIM2-M336	transposon CACTG element Rim2-M336			4	AL731637: 20,934-35,854.	 Other						GO:0032196 - transposition		
16650	RIM2-M337	Rim2-M337	TRANSPOSON CACTG ELEMENT RIM2-M337	transposon CACTG element Rim2-M337			7	AP005448: 75,874-91,050.	 Other						GO:0032196 - transposition		
16651	RIM2-M338	Rim2-M338	TRANSPOSON CACTG ELEMENT RIM2-M338	transposon CACTG element Rim2-M338			10	AC105932: 41,189-56,474.	 Other						GO:0032196 - transposition		
16652	RIM2-M339	Rim2-M339	TRANSPOSON CACTG ELEMENT RIM2-M339	transposon CACTG element Rim2-M339			1	AP003449: 124,022-139,705.	 Other						GO:0032196 - transposition		
16653	RIM2-M340	Rim2-M340	TRANSPOSON CACTG ELEMENT RIM2-M340	transposon CACTG element Rim2-M340			4	AL731629: 33,160-50,382.	 Other						GO:0032196 - transposition		
16654	RIM2-M341	Rim2-M341	TRANSPOSON CACTG ELEMENT RIM2-M341	transposon CACTG element Rim2-M341			4	AL606989: 78,621-98,505.	 Other						GO:0032196 - transposition		
16655	RIM2-M342	Rim2-M342	TRANSPOSON CACTG ELEMENT RIM2-M342	transposon CACTG element Rim2-M342			1	AP003217: 11,997-34,056.	 Other						GO:0032196 - transposition		
16656	RIM2-M343	Rim2-M343	TRANSPOSON CACTG ELEMENT RIM2-M343	transposon CACTG element Rim2-M343			4	AL662972: 111,865-142,985.	 Other						GO:0032196 - transposition		
16657	RIM2-M344	Rim2-M344	TRANSPOSON CACTG ELEMENT RIM2-M344	transposon CACTG element Rim2-M344			10	AC097278: 65,627-108,179.	 Other						GO:0032196 - transposition		
16658	_	RgMADS1	_					AF002254. a MADS box gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0006022 - floral organ development trait	
16659	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			8	JN016859.	 Other						GO:0032196 - transposition		
16660	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			12	JN016857.	 Other						GO:0032196 - transposition		
16661	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin			11	JN016855.	 Other						GO:0032196 - transposition		
16662	_	Gaijin	_	Gaijin element, MITE Gaijin, miniature inverted repeat transposable element Gaijin				JN016853.	 Other						GO:0032196 - transposition		
16663	GAIJIN-OS1	Gaijin-Os1	GAIJIN-OS1 ELEMENT	Gaijin-Os1 element, MITE Gaijin-Os1, miniature inverted repeat transposable element Gaijin-Os1			8	Gaijin-Os1 is located in the first intron of the O. sativa 4-coumarate-CoA ligase gene (Os08g0245200).  U61383 (Oryza rufipogon).	 Other						GO:0032196 - transposition		
16664	GAIJIN-OS2	Gaijin-Os2	GAIJIN-OS2 ELEMENT	Gaijin-Os2 element, MITE Gaijin-Os2, miniature inverted repeat transposable element Gaijin-Os2			2	Gaijin-Os2 is located in the 5' of Serine carboxypeptidase (Cbp3, RICCBP3, D10985, Os02g0114200). 	 Other						GO:0032196 - transposition		
16665	GAIJIN-OS3	Gaijin-Os3	GAIJIN-OS3 ELEMENT	Gaijin-Os3 element, MITE Gaijin-Os3, miniature inverted repeat transposable element Gaijin-Os3			5	Gaijin-Os3 is located in the 5' of Aspartic protease (RICAP, D32165, Os05g0567100). 	 Other						GO:0032196 - transposition		
16666	GAIJIN-OS4	Gaijin-Os4	GAIJIN-OS4 ELEMENT	Gaijin-Os4 element, MITE Gaijin-Os4, miniature inverted repeat transposable element Gaijin-Os4				Gaijin-Os4 is located in EST RICC107591. 	 Other						GO:0032196 - transposition		
16667	CASTAWAY-OS1	Castaway-Os1	CASTAWAY-OS1 ELEMENT	Castaway-Os1 element, MITE Castaway-Os1, miniature inverted repeat transposable element Castaway-Os1			1	Castaway-Os1 is located in 5' of Salt tolerance protein (SalT, Os01g0348900). 	 Other						GO:0032196 - transposition		
16668	CASTAWAY-OS2	Castaway-Os2	CASTAWAY-OS2 ELEMENT	Castaway-Os2 element, MITE Castaway-Os2, miniature inverted repeat transposable element Castaway-Os2			7	Castaway-Os2 is located in 5' of Thioredoxin h (RICRTH, D26547, Os07g0186000). 	 Other						GO:0032196 - transposition		
16669	DITTO-OS1	Ditto-Os1	DITTO-OS1 ELEMENT	Ditto-Os1 element, MITE Ditto-Os1, miniature inverted repeat transposable element Ditto-Os1			1	Ditto-Os1 is located in 5' of 16.9 kDa HSP (RICHSEA, M80938, Os01g0136100). 	 Other						GO:0032196 - transposition		
16670	DITTO-OS2	Ditto-Os2	DITTO-OS2 ELEMENT	Ditto-Os2 element, MITE Ditto-Os2, miniature inverted repeat transposable element Ditto-Os2			3	Ditto-Os2 is located in 5' of Homeobox (OSH1, RICOSH1, D16507, Os03g0727000). 	 Other						GO:0032196 - transposition		
16671	WANDERER-OS1	Wanderer-Os1	WANDERER-OS1 ELEMENT	Wanderer-Os1 element, MITE Wanderer-Os1, miniature inverted repeat transposable element Wanderer-Os1			2	Wanderer-Os1 is located in intron 1 of HMGR (RIC3H3M, L28995, Os02g0713900). 	 Other						GO:0032196 - transposition		
16672	WANDERER-OS2	Wanderer-Os2	WANDERER-OS2 ELEMENT	Wanderer-Os2 element, MITE Wanderer-Os2, miniature inverted repeat transposable element Wanderer-Os2			2	Wanderer-Os2 is located in 5' of HMGR (RIC3H3M, L28995, Os02g0713900). 	 Other						GO:0032196 - transposition		
16673	WANDERER-OS3	Wanderer-Os3	WANDERER-OS3 ELEMENT	Wanderer-Os3 element, MITE Wanderer-Os3, miniature inverted repeat transposable element Wanderer-Os3			10	Wanderer-Os3 is located in 5' of Prepro-glutelin (RICGLUTE, D00584, Os10g0400200). 	 Other						GO:0032196 - transposition		
16674	WANDERER-OS4	Wanderer-Os4	WANDERER-OS4 ELEMENT	Wanderer-Os4 element, MITE Wanderer-Os4, miniature inverted repeat transposable element Wanderer-Os4				Wanderer-Os4 is located in 5' of a-Amylase (OSALAM). 	 Other						GO:0032196 - transposition		
16675	WANDERER-OS5	Wanderer-Os5	WANDERER-OS5 ELEMENT	Wanderer-Os5 element, MITE Wanderer-Os5, miniature inverted repeat transposable element Wanderer-Os5			12	Wanderer-Os5 is located in 5' of H3 Histone pseudogene (OSHIS3PS, AA749776, Os12g0415800). 	 Other						GO:0032196 - transposition		
16676	WANDERER-OL1	Wanderer-Ol1	WANDERER-OL1 ELEMENT	Wanderer-Ol1 element, MITE Wanderer-Ol1, miniature inverted repeat transposable element Wanderer-Ol1			11	Wanderer-Ol1 is located in U34601.  Oryza longistaminata Wanderer.	 Other						GO:0032196 - transposition		
16677	EXPLORER-OS1	Explorer-Os1	EXPLORER-OS1 ELEMENT	Explorer-Os1 element, MITE Explorer-Os1, miniature inverted repeat transposable element Explorer-Os1			1	Explorer-Os1 is located in 5' of 16.9 kDa HSP (RICHSEA, M80938, Os01g0136100).	 Other						GO:0032196 - transposition		
16678	EXPLORER-OS2	Explorer-Os2	EXPLORER-OS2 ELEMENT	Explorer-Os2 element, MITE Explorer-Os2, miniature inverted repeat transposable element Explorer-Os2			7	Explorer-Os2 is located in 5' of Thioredoxin h (RICRTH, D26547, Os07g0186000).	 Other						GO:0032196 - transposition		
16679	EXPLORER-OS3	Explorer-Os3	EXPLORER-OS3 ELEMENT	Explorer-Os3 element, MITE Explorer-Os3, miniature inverted repeat transposable element Explorer-Os3			5	Explorer-Os3 is located in STS (RICG1103A, D25363).	 Other						GO:0032196 - transposition		
16680	_	Ret1	_	transposale element Ret1				D14534 (O. longistaminata).	 Other						GO:0032196 - transposition		
16681	_	Tnr2	_	transposale element Tnr2				D14534 (O. rufipogon).	 Other						GO:0032196 - transposition		
16682	_		_	58K antigen			5	D15585.		Os05g0540300	LOC_Os05g46290.1				GO:0046686 - response to cadmium ion, GO:0005774 - vacuolar membrane, GO:0042026 - protein refolding, GO:0005524 - ATP binding		
16683	HSP60-3B	OsHSP60-3B	HEAT SHOCK PROTEIN60-3B	58K antigen, HypB protein, 60 kDa chaperonin	HEAT SHOCK PROTEIN60-3B	oshsp60-3b	10	D15815, D15688. GO:0062052: starch granule initiation. GO:2000377: regulation of reactive oxygen species metabolic process.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os10g0462900	LOC_Os10g32550.1				GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0034021 - response to silicon dioxide, GO:0009609 - response to symbiotic bacterium, GO:0010581 - regulation of starch biosynthetic process, GO:0009536 - plastid, GO:0042026 - protein refolding, GO:0010941 - regulation of cell death, GO:0009555 - pollen development, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance, TO:0000067 - genic male sterility-thermo sensitive, TO:0000218 - pollen abortion type	PO:0001007 - pollen development stage 
16684	_	OsARFA1d, ARFA1d	_	ADP-ribosylation factor 1, ADP-ribosylation factor 4, ADP-ribosylation factor A1d			7	D23603. D22513. LOC_Os07g12200. OsARFA1d in Muthamilarasan et al. 2016.		Os07g0223400 	LOC_Os07g12200.1				GO:0009506 - plasmodesma, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0005794 - Golgi apparatus, GO:0005773 - vacuole, GO:0007264 - small GTPase mediated signal transduction		
16685	_	OsARFA1f, ARFA1f	_	ADP-ribosylation factor 2B, ADP-ribosylation factor A1f			3	D15833. LOC_Os03g59740. OsARFA1f in Muthamilarasan et al. 2016.		Os03g0811900	LOC_Os03g59740.1, LOC_Os03g59740.2, LOC_Os03g59740.3, LOC_Os03g59740.5				GO:0005773 - vacuole, GO:0007264 - small GTPase mediated signal transduction, GO:0005886 - plasma membrane, GO:0005525 - GTP binding, GO:0046686 - response to cadmium ion		
16686	_	OsAKR5, AKR5	_	Alcohol dehydrogenase (NADP(+)), Group 5 Aldo-Keto Reductase			10	D15481. Q7G764. one of eight members of Group 5 Aldo-Keto Reductase.	 Biochemical character	Os10g0113000	LOC_Os10g02380.1				GO:0016491 - oxidoreductase activity		
16687	_		_	Arginine;tRNA ligase			5	D16052.	 Biochemical character	Os05g0163000	LOC_Os05g07030.1, LOC_Os05g07030.2, LOC_Os05g07030.3				GO:0005524 - ATP binding, GO:0006420 - arginyl-tRNA aminoacylation, GO:0005737 - cytoplasm, GO:0004814 - arginine-tRNA ligase activity		
16688	_		_	Aspartate aminotransferase			1	D16032. P37833.	 Biochemical character	Os01g0760600	LOC_Os01g55540.1, LOC_Os01g55540.2				GO:0006807 - nitrogen compound metabolic process, GO:0006103 - 2-oxoglutarate metabolic process, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0006099 - tricarboxylic acid cycle, GO:0016020 - membrane, GO:0010150 - leaf senescence, GO:0005777 - peroxisome, GO:0006536 - glutamate metabolic process, GO:0009058 - biosynthetic process, GO:0006531 - aspartate metabolic process, GO:0006522 - alanine metabolic process		
16689	_		_	Aspartate aminotransferase			2	D16037.	 Biochemical character	Os02g0236000	LOC_Os02g14110.1				GO:0009058 - biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity, GO:0006520 - cellular amino acid metabolic process, GO:0005507 - copper ion binding, GO:0046686 - response to cadmium ion, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity		
16690	_		_	Awd protein			10	D15996.	 Biochemical character	Os10g0563700	LOC_Os10g41410.1, LOC_Os10g41410.2				GO:0006183 - GTP biosynthetic process, GO:0006241 - CTP biosynthetic process, GO:0004550 - nucleoside diphosphate kinase activity, GO:0005524 - ATP binding, GO:0006228 - UTP biosynthetic process		
16691	_		_	cystathine gamma-lyase			6	D16091. GO:0071266: 'de novo' L-methionine biosynthetic process.	 Biochemical character	Os06g0175800	LOC_Os06g07860.1, LOC_Os06g07960.1				GO:0004121 - cystathionine beta-lyase activity, GO:0030170 - pyridoxal phosphate binding		
16692	LC4	OsLC4	LYSINE CONTENT 4	Dihydrodipicolinate synthase, lysine content 4, lysine content on chromosome 4			4	D15614. 	 Seed - Physiological traits - Storage substances,  Biochemical character	Os04g0254000	LOC_Os04g18200.1				GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0008840 - dihydrodipicolinate synthase activity	TO:0002673 - amino acid content	PO:0007633 - endosperm development stage 
16693	CCR10	OsCCR10, CCR10	CINNAMOYL-COA REDUCTASE 10	Dihydrofolate-4-reductase, Cinnamoyl-CoA reductase 10, OsCINNAMOYL-COENZYME A REDUCTASE10, CINNAMOYL-COENZYME A REDUCTASE 10	CINNAMOYL-COA REDUCTASE 10		2	D15642. GO:1901063: guaiacyl lignin biosynthetic process. GO:1901060: p-hydroxyphenyl lignin biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0811800	LOC_Os02g56700.1				GO:0005737 - cytoplasm, GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009809 - lignin biosynthetic process, GO:0044237 - cellular metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0030104 - water homeostasis, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000153 - relative yield, TO:0000136 - relative water content, TO:0006001 - salt tolerance, TO:0000731 - lignin content, TO:0000615 - abscisic acid sensitivity, TO:0000316 - photosynthetic ability, TO:0000276 - drought tolerance	PO:0009005 - root 
16694	_	OsEno2, Eno2	_	enolase, enolase 2			3	D15980. OsEno2 in Fukayama et al. 2014.	 Biochemical character	Os03g0248600	LOC_Os03g14450.1, LOC_Os03g14450.2				GO:0005886 - plasma membrane, GO:0048046 - apoplast, GO:0009506 - plasmodesma, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0000015 - phosphopyruvate hydratase complex, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0009416 - response to light stimulus, GO:0006096 - glycolysis, GO:0005740 - mitochondrial envelope, GO:0046686 - response to cadmium ion, GO:0000287 - magnesium ion binding, GO:0004634 - phosphopyruvate hydratase activity, GO:0005507 - copper ion binding		
16695	_	PAL03, OsPAL8, PAL8	_	Phenylalanine ammonia-lyase			11	OsPAL8 in Tonnessen et al. 2014, He et al. 2020, Sun et al. 2024. GO:1901141: regulation of lignin biosynthetic process. GO:0080167: response to karrikin. 	 Tolerance and resistance - Insect resistance,  Biochemical character	Os11g0708900	LOC_Os11g48110.1				GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0046274 - lignin catabolic process, GO:0009555 - pollen development, GO:0009800 - cinnamic acid biosynthetic process, GO:0009819 - drought recovery, GO:0010224 - response to UV-B, GO:0045548 - phenylalanine ammonia-lyase activity, GO:0009809 - lignin biosynthetic process, GO:0002213 - defense response to insect, GO:0046244 - salicylic acid catabolic process, GO:0006979 - response to oxidative stress, GO:0006559 - L-phenylalanine catabolic process, GO:0005737 - cytoplasm	TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease	PO:0020104 - leaf sheath , PO:0009047 - stem 
16696	SNL6	Snl6, OsSNL6, OsCCR2, CCR2	SUPPRESSOR OF NH1-MEDIATED LESION FORMATION 6	suppressor of BTH-induced, NH1-mediated lesion mimic 6, suppressor of NH1-mediated lesion formation 6, Cinnamoyl-CoA reductase 2			1	Cinnamoyl CoA-Reductase (CCR)-Like Gene Family member. 	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0639200	LOC_Os01g45200.1				GO:0006694 - steroid biosynthetic process, GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000303 - cold tolerance	
16697	_		_	beta-1, 3-glucanase			2		 Tolerance and resistance,  Biochemical character	Os02g0832500	LOC_Os02g58560.1, LOC_Os02g58560.3				GO:0006952 - defense response, GO:0000148 - 1,3-beta-glucan synthase complex, GO:0003843 - 1,3-beta-glucan synthase activity, GO:0006075 - 1,3-beta-glucan biosynthetic process	TO:0000179 - biotic stress trait	
16698	LAC11	Lac, OsLAC11, LAC10, OsLAC10	LACCASE 11	lactase, laccase 11, laccase-10	LACCASE 11		3	Q10ND7. GO:0052716: hydroquinone:oxygen oxidoreductase activity. LAC10 in Swetha et al. 2018, Wang et al. 2019, Wang et al. 2020.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Biochemical character	Os03g0273200	LOC_Os03g16610.1				GO:0048046 - apoplast, GO:0010038 - response to metal ion, GO:0050832 - defense response to fungus, GO:0005507 - copper ion binding, GO:0046686 - response to cadmium ion, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0009809 - lignin biosynthetic process, GO:0046274 - lignin catabolic process	TO:0000034 - chromium sensitivity, TO:0000179 - biotic stress trait, TO:0000048 - kernel smut disease resistance	
16699	M6PR	OsM6PR1, M6PR1, OsM6PR2, M6PR2, OsM6PR, OsS6PDH, S6PDH, OsAKR4-4, AKR4-4	MANNOSE-6-PHOSPHATE REDUCTASE	NADPH-dependent mannose-6-phosphate reductase, NADPH-dependent mannose-6-phosphate reductase 1, NADPH-dependent mannose-6-phosphate reductase 2, sorbitol-6-phosphate dehydrogenase, Aldo-Keto Reductase 4-4, Group 4 Aldo-Keto Reductase 4	MANNOSE-6-PHOSPHATE REDUCTASE		2	D41273, D48175. OsAKR4-4 in Chen et al. 2023. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0123500	LOC_Os02g03100.1, LOC_Os02g03100.2				GO:0005829 - cytosol, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009635 - response to herbicide, GO:0018920 - glyphosate metabolic process, GO:0006970 - response to osmotic stress, GO:0016491 - oxidoreductase activity	TO:0000058 - herbicide sensitivity, TO:0005006 - glyphosate sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
16700	FAD2-2	OsFAD2-2, OsaFAD2-3, FAD2-3	FATTY ACID DESATURASE 2-2	fatty acid desaturase 2-2, microsomal delta-12 fatty acid desaturase2-2, fatty acid desaturase 2-2	FATTY ACID DESATURASE 2-2		7	OsaFAD2-3 in Zhao et al. 2019.	 Biochemical character	Os07g0417200	LOC_Os07g23430.1				GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0006629 - lipid metabolic process		
16701	FAD2-3	OsFAD2-3, OsaFAD2-2, FAD2-2	FATTY ACID DESATURASE 2-3	fatty acid desaturase 2-3, microsomal delta-12 fatty acid desaturase2-3	FATTY ACID DESATURASE 2-3		7	OsaFAD2-2 in Zhao et al. 2019.	 Biochemical character	Os07g0416900	LOC_Os07g23410.2, LOC_Os07g23410.1				GO:0009609 - response to symbiotic bacterium, GO:0006629 - lipid metabolic process, GO:0045485 - omega-6 fatty acid desaturase activity, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water		PO:0009005 - root 
16702	FAD2-4	OsFAD2-4	FATTY ACID DESATURASE 2-4	fatty acid desaturase 2-4, microsomal delta-12 fatty acid desaturase2-4	FATTY ACID DESATURASE 2-4		7		 Biochemical character	Os07g0416700	LOC_Os07g23390.1				GO:0006629 - lipid metabolic process, GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water		
16703	_	OsKMD1, OsFbox074, OsFbox74, Os_F0323, OsFBK4, FBK4	_	KISS ME DEADLY1, KISS ME DEADLY 1, F-box protein 74, F-box-type E3 ubiquitin ligase K4			2	LOC_Os02g11790. Os_F0323 in Hua et al. 2011.		Os02g0208700	LOC_Os02g11790.1						
16704	FBOX314	OsKMD2, KMD2, OsFbox314, Fbox314, Os_F0507, OsFBK16, FBK16	F-BOX PROTEIN 314	KISS ME DEADLY2, KISS ME DEADLY 2, F-box protein 314, F-box-type E3 ubiquitin ligase K16	F-BOX PROTEIN 314	osfbk16	6	Os_F0507 in Hua et al. 2011. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os06g0594400	LOC_Os06g39370.1				GO:0050832 - defense response to fungus, GO:0050777 - negative regulation of immune response	TO:0000167 - cytokinin sensitivity, TO:0000074 - blast disease	
16705	_	OsKMD3, OsFbox096, OsFbox96, Os_F0169, OsFBK8, FBK8	_	KISS ME DEADLY3, KISS ME DEADLY 3, F-box protein 96, F-box-type E3 ubiquitin ligase K8			2	LOC_Os02g35530. Os_F0169 in Hua et al. 2011.		Os02g0563000	LOC_Os02g35530.1						
16706	_	OsKMD4, OsFbox596, Os_F0436, OsFBK25, FBK25	_	KISS ME DEADLY4, KISS ME DEADLY 4, F-box protein 596, F-box-type E3 ubiquitin ligase K25			11	LOC_Os11g14140. Os_F0436 in Hua et al. 2011.		Os11g0246200	LOC_Os11g14140.1						
16707	_	OsRPK1	_	leucine-rich repeat receptor-like kinase 1			5	a Ca2+-independent Ser/Thr kinase. GO:0060918: auxin transport.	 Vegetative organ - Root	Os05g0486100	LOC_Os05g40770.1, LOC_Os05g40770.2				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0048364 - root development	TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0002672 - auxin content	
16708	PHI1	OsPHI1, OsPHI-1, PHI-1	PHOSPHATE-INDUCED PROTEIN 1	phosphate-induced protein 1	PHOSPHATE-INDUCED PROTEIN 1	osphi-1	2	an extracellular protein with a putative ATP-binding domain. homologous to tobacco phosphateinduced protein 1 (PHI-1) and Arabidopsis EXORDIUM (EXO). 	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity	Os02g0757100	LOC_Os02g52040.1				GO:0001666 - response to hypoxia, GO:0009741 - response to brassinosteroid stimulus, GO:0000226 - microtubule cytoskeleton organization, GO:0005794 - Golgi apparatus, GO:0040007 - growth, GO:0016049 - cell growth, GO:0009733 - response to auxin stimulus, GO:0009505 - plant-type cell wall	TO:0000163 - auxin sensitivity, TO:0000391 - seed size, TO:0000734 - grain length, TO:0002684 - plant cell size, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000590 - grain weight	
16709	_		_	MAP65/ASE family protein, microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			8			Os08g0531100	LOC_Os08g41890.1, LOC_Os08g41890.2				GO:0000226 - microtubule cytoskeleton organization, GO:0005737 - cytoplasm, GO:0005819 - spindle, GO:0008017 - microtubule binding, GO:0000910 - cytokinesis, GO:0031122 - cytoplasmic microtubule organization, GO:0009832 - plant-type cell wall biogenesis		
16710	_	OsARGOS	_				4	an ARGOS orthologous gene. Q7X6L2. GO:0071368: cellular response to cytokinin stimulus.		Os04g0444300	LOC_Os04g36670.1				GO:0016020 - membrane, GO:0008284 - positive regulation of cell proliferation, GO:0007275 - multicellular organismal development, GO:0005783 - endoplasmic reticulum, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0016021 - integral to membrane, GO:0030307 - positive regulation of cell growth, GO:0046622 - positive regulation of organ growth, GO:0071365 - cellular response to auxin stimulus		
16711	_	SWL1	_	SNOW-WHITE LEAF1, SNOW-WHITE LEAF 1		swl1, swl1-v, swl1-stb, SWL1-W, swl1-R, swl1-sx1, swl1-sx2, swl1-sx3, swl1-sx4	4	an unknown protein with the N-terminal chloroplast transit peptide. a variegated albino mutant.	 Vegetative organ - Leaf,  Coloration	Os04g0497900	LOC_Os04g42030.1				GO:0048366 - leaf development, GO:0009507 - chloroplast, GO:0009535 - chloroplast thylakoid membrane, GO:0009790 - embryonic development, GO:0009658 - chloroplast organization	TO:0000069 - variegated leaf, TO:0002715 - chloroplast development trait, TO:0000655 - leaf development trait, TO:0000326 - leaf color	
16712	MYB14	OsMYB14, OsJAdMYB1, JAdMYB1, Os2R_MYB12, 2R_MYB12	MYB TRANSCRIPTION FACTOR 14	MYB transcription factor 14, JA-dependent MYB1, R2R3-MYB Transcription Factor 12	MYB TRANSCRIPTION FACTOR 14	osmyb14, osmyb14-ko, osmyb14-ko2, osmyb14-ko3, osmyb14-ko5, osmyb14-ko6	1	ABA-dependent, growth regulatory and stress-responsive MYB transcription factor. PO:0030123: panicle inflorescence. GO:0090354: regulation of auxin metabolic process. TO:0020106: Indole-3-acetic acid content.	 Other,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Culm	Os01g0702700	LOC_Os01g50720.1				GO:0003677 - DNA binding, GO:0009738 - abscisic acid mediated signaling, GO:0010224 - response to UV-B, GO:0009651 - response to salt stress, GO:0006109 - regulation of carbohydrate metabolic process, GO:0005634 - nucleus, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0009414 - response to water deprivation, GO:0019216 - regulation of lipid metabolic process, GO:0003682 - chromatin binding	TO:0000276 - drought tolerance, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0002675 - gibberellic acid content, TO:0006001 - salt tolerance, TO:0000152 - panicle number, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000601 - UV-B light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002672 - auxin content	PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0009049 - inflorescence 
16713	MIR820D	miR820d, osa-miR820d, osa-MIR820d	MICRORNA820D	MICRORNA820d, osa-miRNA820d	_		8	target: Os03g0110800 (DRM2). predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035195 - gene silencing by miRNA, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
16714	MIR820E	miR820e, osa-miR820e, osa-MIR820e	MICRORNA820E	MICRORNA820e, osa-miRNA820e	_		2	target: Os03g0110800 (DRM2). predicted targets for Osa-miR820: Os03g0110800, Os11g0127000, Os10g0572400, Os02g0612800, Os05g0548100, Os02g0666200.	 Other,  Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
16715	_	CADL	_	cinnamyl alcohol dehydrogenase-like			1		 Biochemical character	Os01g0528800	LOC_Os01g34480.1, LOC_Os01g34480.2, LOC_Os01g34480.3				GO:0005794 - Golgi apparatus, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0009807 - lignan biosynthetic process, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005829 - cytosol	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
16716	_	OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5	_	ferulate 5-hydroxylase 1, Coniferaldehyde 5-hydroxylase 1			10		 Biochemical character	Os10g0512400	LOC_Os10g36848.1				GO:0009808 - lignin metabolic process, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009809 - lignin biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0009807 - lignan biosynthetic process, GO:0005506 - iron ion binding, GO:0044036 - cell wall macromolecule metabolic process, GO:0010229 - inflorescence development, GO:0004497 - monooxygenase activity	TO:0000180 - spikelet fertility, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000621 - inflorescence development trait, TO:0006036 - stem elongation, TO:0000576 - stem length	PO:0001083 - inflorescence development stage , PO:0007089 - stem elongation stage 
16717	C4H1	OsC4H1, OsC4H, C4H	CINNAMATE 4-HYDROXYLASE 1	cinnamate 4-hydroxylase 1	CINNAMATE 4-HYDROXYLASE 1		2		 Biochemical character	Os02g0467600	LOC_Os02g26810.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009807 - lignan biosynthetic process	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
16718	C4H2	OsC4H, OsC4HL, C4H, OsC4H2	CINNAMATE 4-HYDROXYLASE 2	cinnamate 4-hydroxylase 2, C4H-like gene, Cinnamate-4-Hydroxylase like gene	CINNAMATE 4-HYDROXYLASE 2		5	GO:0080167: response to karrikin. AB207105. a Cytochrome P450-Dependent Monooxygenase. Trans-cinnamate 4-mono-oxygenase.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Coloration - Anthocyanin	Os05g0320700	LOC_Os05g25640.1				GO:0046688 - response to copper ion, GO:0040007 - growth, GO:0009718 - anthocyanin biosynthetic process, GO:0005794 - Golgi apparatus, GO:0004497 - monooxygenase activity, GO:0009699 - phenylpropanoid biosynthetic process, GO:0009555 - pollen development, GO:0009506 - plasmodesma, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0002213 - defense response to insect, GO:0005783 - endoplasmic reticulum, GO:0009505 - plant-type cell wall, GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0009807 - lignan biosynthetic process, GO:0009808 - lignin metabolic process, GO:0010266 - response to vitamin B1, GO:0010224 - response to UV-B, GO:0009814 - defense response, incompatible interaction, GO:0002238 - response to molecule of fungal origin, GO:0009809 - lignin biosynthetic process, GO:0005774 - vacuolar membrane, GO:0005506 - iron ion binding, GO:0009611 - response to wounding	TO:0000112 - disease resistance, TO:0000326 - leaf color, TO:0000731 - lignin content, TO:0000021 - copper sensitivity, TO:0000424 - brown planthopper resistance, TO:0000601 - UV-B light sensitivity, TO:0000733 - lignin biosynthesis trait	
16719	_	HCT3	_	hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 3			9		 Biochemical character	Os09g0422000	LOC_Os09g25460.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009807 - lignan biosynthetic process	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	
16720	C3H1	OsC3H1, OsC3'H, C3'H, OsCYP71P5, CYP71P5	P-COUMAROYL SHIKIMATE/QUINATE 3-HYDROXYLASE 1	p-coumaroyl shikimate/quinate 3-hydroxylase 1, Cytochrome P450 71P5	P-COUMAROYL SHIKIMATE/QUINATE 3-HYDROXYLASE 1		5	BGIOSGA020098. GO:0072548: dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity. GO:0072551: diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity. GO:0072549: monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity. GO0072552: monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity. GO:0072547: tricoumaroylspermidine meta-hydroxylase activity. GO:0072550: triferuloylspermidine meta-hydroxylase activity.	 Biochemical character	Os05g0494000	LOC_Os05g41440.1, LOC_Os05g41440.2				GO:0009809 - lignin biosynthetic process, GO:0009805 - coumarin biosynthetic process, GO:0020037 - heme binding, GO:0009813 - flavonoid biosynthetic process, GO:0005506 - iron ion binding, GO:0046409 - p-coumarate 3-hydroxylase activity, GO:0005783 - endoplasmic reticulum, GO:0005739 - mitochondrion, GO:0008216 - spermidine metabolic process, GO:0005886 - plasma membrane	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	
16721	CCR19	OsCCR19	CINNAMOYL-COA REDUCTASE 19	cinnamoyl CoA reductase 19	CINNAMOYL-COA REDUCTASE 19		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0419200	LOC_Os09g25150.1, LOC_Os09g25150.2, LOC_Os09g25150.3				GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0009807 - lignan biosynthetic process	TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait, TO:0000276 - drought tolerance	
16722	CCR21	OsCCR21	CINNAMOYL-COA REDUCTASE 21	cinnamoyl CoA reductase 21	CINNAMOYL-COA REDUCTASE 21		2	Dihydroflavonol-4-reductase. ortholog of AtIRX1.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0180700	LOC_Os02g08420.1				GO:0046688 - response to copper ion, GO:0009807 - lignan biosynthetic process, GO:0050662 - coenzyme binding, GO:0006952 - defense response, GO:0044237 - cellular metabolic process, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation, GO:0009411 - response to UV	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0000303 - cold tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000731 - lignin content, TO:0000175 - bacterial blight disease resistance, TO:0000021 - copper sensitivity, TO:0000112 - disease resistance, TO:0000733 - lignin biosynthesis trait	
16723	_	TXNL4B, Dim2, DLP	_	thioredoxin-like protein 4B			11		 Other	Os11g0297900	LOC_Os11g19220.1				GO:0007067 - mitosis, GO:0005681 - spliceosomal complex		
16724	AAT1	AST, OsAAT1	ASPARTATE AMINOTRANSFERASE 1	Aspartate aminotransferase	ASPARTATE AMINOTRANSFERASE 1		2		 Biochemical character	Os02g0797500 	LOC_Os02g55420.1				GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0009409 - response to cold, GO:0048046 - apoplast, GO:0009941 - chloroplast envelope, GO:0006520 - cellular amino acid metabolic process, GO:0046686 - response to cadmium ion, GO:0009058 - biosynthetic process, GO:0009570 - chloroplast stroma, GO:0030170 - pyridoxal phosphate binding, GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity, GO:0010319 - stromule		
16725	_	Rubisco-L	_	Rubisco large subunit			6	gi:115468792. Os06g0598500  (in Rap1 (build3), Rap2 (build4)).	 Biochemical character						GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0000287 - magnesium ion binding, GO:0016984 - ribulose-bisphosphate carboxylase activity		
16727	TABITOI	TabitoI	TRANSPOSON MITE TABITO I	MITE element Tabito I, Tabito I MITE transposon, transposable element Tabito I, Tabito I			6	AB077830.	 Other						GO:0032196 - transposition		
16728	TABITOII	TabitoII	TRANSPOSON MITE TABITO II	MITE element Tabito II, Tabito II MITE transposon, transposable element Tabito II, Tabito II			6	AB077831.	 Other						GO:0032196 - transposition		
16729	TABITOIII	TabitoIII	TRANSPOSON MITE TABITO III	MITE element Tabito III, Tabito III MITE transposon, transposable element Tabito III, Tabito III			6	AB078024.	 Other						GO:0032196 - transposition		
16730	TABITOIV	TabitoIV	TRANSPOSON MITE TABITO IV	MITE element Tabito IV, Tabito IV MITE transposon, transposable element Tabito IV, Tabito IV			6	AB078025.	 Other						GO:0032196 - transposition		
16731	TABITOV	TabitoV	TRANSPOSON MITE TABITO V	MITE element Tabito V, Tabito V MITE transposon, transposable element Tabito V, Tabito V			6	AB078025.	 Other						GO:0032196 - transposition		
16732	TABITOVI	TabitoVI	TRANSPOSON MITE TABITO VI	MITE element Tabito VI, Tabito VI MITE transposon, transposable element Tabito VI, Tabito VI			6	AB077833.	 Other						GO:0032196 - transposition		
16733	KISERUI	KiseruI	TRANSPOSON MITE KISERU I	MITE element Kiseru I, Kiseru I MITE transposon, transposable element Kiseru I, Kiseru I			6	AB077834.	 Other						GO:0032196 - transposition		
16734	KISERUII	KiseruII	TRANSPOSON MITE KISERU II	MITE element Kiseru II, Kiseru II MITE transposon, transposable element Kiseru II, Kiseru II			6	AB077835.	 Other						GO:0032196 - transposition		
16735	KISERUIII	KiseruIII	TRANSPOSON MITE KISERU III	MITE element Kiseru III, Kiseru III MITE transposon, transposable element Kiseru III, Kiseru III			6	AB077836.	 Other						GO:0032196 - transposition		
16736	KISERUIV	KiseruIV	TRANSPOSON MITE KISERU IV	MITE element Kiseru IV, Kiseru IV MITE transposon, transposable element Kiseru IV, Kiseru IV			6	AB077837.	 Other						GO:0032196 - transposition		
16737	AKAN	Akan	TRANSPOSON MITE AKAN	MITE element Akan, Akan MITE transposon, transposable element Akan			6	AB077838.	 Other						GO:0032196 - transposition		
16738	SAROMA	Saroma	TRANSPOSON MITE SAROMA	MITE element Saroma, Saroma MITE transposon, transposable element Saroma			6	AB077840.	 Other						GO:0032196 - transposition		
16739	SHIKOTSU	Shikotsu	TRANSPOSON MITE SHIKOTSU	MITE element Shikotsu, Shikotsu MITE transposon, transposable element Shikotsu			6	AB077841.	 Other						GO:0032196 - transposition		
16740	TOYA	Toya	TRANSPOSON MITE TOYA	MITE element Toya, Toya MITE transposon, transposable element Toya			6	AB077842.	 Other						GO:0032196 - transposition		
16741	MOIWA	Moiwa	TRANSPOSON MITE MOIWA	MITE element Moiwa, Moiwa MITE transposon, transposable element Moiwa			6	AB077843.	 Other						GO:0032196 - transposition		
16742	RISHIRI	Rishiri	TRANSPOSON MITE RISHIRI	MITE element Rishiri, Rishiri MITE transposon, transposable element Rishiri			6	AB077844.	 Other						GO:0032196 - transposition		
16743	SHARI	Shari	TRANSPOSON MITE SHARI	MITE element Shari, Shari MITE transposon, transposable element Shari			6	AB077845.	 Other						GO:0032196 - transposition		
16744	TAISETSU	Taisetsu	TRANSPOSON MITE TAISETSU	MITE element Taisetsu, Taisetsu MITE transposon, transposable element Taisetsu			6	AB077846.	 Other						GO:0032196 - transposition		
16745	TEINE	Teine	TRANSPOSON MITE TEINE	MITE element Teine, Teine MITE transposon, transposable element Teine			6	AB077847.	 Other						GO:0032196 - transposition		
16746	TENGU	Tengu	TRANSPOSON MITE TENGU	MITE element Tengu, Tengu MITE transposon, transposable element Tengu			6	AB077848.	 Other						GO:0032196 - transposition		
16747	YOUTEI	Youtei	TRANSPOSON MITE YOUTEI	MITE element Youtei, Youtei MITE transposon, transposable element Youtei			6	AB077849.	 Other						GO:0032196 - transposition		
16748	ONAGAI	OnagaI	MU-LIKE TRANSPOSABLE ELEMENT ONAGA I	Mu-like transposable element Onaga I			6		 Other						GO:0032196 - transposition		
16749	ONAGAII	OnagaII	MU-LIKE TRANSPOSABLE ELEMENT ONAGA II	Mu-like transposable element Onaga II			6		 Other						GO:0032196 - transposition		
16750	BASHO	Basho	TRANSPOSON BASHO	Basho element, Basho transposon, transposable element Basho					 Other						GO:0032196 - transposition		
16751	STOW-I	Stow-I	TRANSPOSON MITE STOWAWAY-I	Stowaway-I, MITE element Stowaway-I, Stowaway-I MITE transposon, transposable element Stowaway-I					 Other						GO:0032196 - transposition		
16752	STOW-II	Stow-II	TRANSPOSON MITE STOWAWAY-II	Stowaway-II, MITE element Stowaway-II, Stowaway-II MITE transposon, transposable element Stowaway-II					 Other						GO:0032196 - transposition		
16753	STOW-III	Stow-III	TRANSPOSON MITE STOWAWAY-III	Stowaway-III, MITE element Stowaway-III, Stowaway-III MITE transposon, transposable element Stowaway-III					 Other						GO:0032196 - transposition		
16754	STOW-IV	Stow-IV	TRANSPOSON MITE STOWAWAY-IV	Stowaway-IV, MITE element Stowaway-IV, Stowaway-IV MITE transposon, transposable element Stowaway-IV					 Other						GO:0032196 - transposition		
16755	STOW-V	Stow-V	TRANSPOSON MITE STOWAWAY-V	Stowaway-V, MITE element Stowaway-V, Stowaway-V MITE transposon, transposable element Stowaway-V					 Other						GO:0032196 - transposition		
16756	STOW-VI	Stow-VI	TRANSPOSON MITE STOWAWAY-VI	Stowaway-VI, MITE element Stowaway-VI, Stowaway-VI MITE transposon, transposable element Stowaway-VI					 Other						GO:0032196 - transposition		
16757	STOW-VII	Stow-VII	TRANSPOSON MITE STOWAWAY-VII	Stowaway-VII, MITE element Stowaway-VII, Stowaway-VII MITE transposon, transposable element Stowaway-VII					 Other						GO:0032196 - transposition		
16758	STOW-VIII	Stow-VIII	TRANSPOSON MITE STOWAWAY-VIII	Stowaway-VIII, MITE element Stowaway-VIII, Stowaway-VIII MITE transposon, transposable element Stowaway-VIII					 Other						GO:0032196 - transposition		
16759	STOW-IX	Stow-IX	TRANSPOSON MITE STOWAWAY-IX	Stowaway-IX, MITE element Stowaway-IX, Stowaway-IX MITE transposon, transposable element Stowaway-IX					 Other						GO:0032196 - transposition		
16760	STOW-X	Stow-X	TRANSPOSON MITE STOWAWAY-X	Stowaway-X, MITE element Stowaway-X, Stowaway-X MITE transposon, transposable element Stowaway-X					 Other						GO:0032196 - transposition		
16761	_	MULE-I	_	Mutator-like element I					 Other						GO:0032196 - transposition		
16762	_	MULE-IV	_	Mutator-like element IV					 Other						GO:0032196 - transposition		
16763	MERMITE	Mermite	MU-LIKE TRANSPOSABLE ELEMENT MERMITE	Mu-like transposable element Mermite			6		 Other						GO:0032196 - transposition		
16764	_	PFP, OscPGM, cPGM	_	"fructose-6-phosphate 1-phosphotransferase, cytosolic phosphoglucomutase, \"phosphoglucomutase, cytoplasmic 2\""			3	LOC_Os03g50480.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0712700	LOC_Os03g50480.1, LOC_Os03g50480.2				GO:0005634 - nucleus, GO:0005975 - carbohydrate metabolic process, GO:0046688 - response to copper ion, GO:0048229 - gametophyte development, GO:0048046 - apoplast, GO:0005829 - cytosol, GO:0009408 - response to heat, GO:0004614 - phosphoglucomutase activity, GO:0000287 - magnesium ion binding, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0009507 - chloroplast	TO:0000432 - temperature response trait, TO:0000021 - copper sensitivity	
16765	MDH8.1	MDH, OsMDH8.1, OsLdh9, Ldh9	MALATE DEHYDROGENASE 8.1	malate dehydrogenase, Lactate Dehydrogenase 9	MALATE DEHYDROGENASE 8.1		8	BF889474. GO:0097501: stress response to metal ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0434300	LOC_Os08g33720.1				GO:0048046 - apoplast, GO:0034059 - response to anoxia, GO:0001666 - response to hypoxia, GO:0009413 - response to flooding, GO:0010038 - response to metal ion, GO:0006950 - response to stress, GO:0006099 - tricarboxylic acid cycle, GO:0005774 - vacuolar membrane, GO:0005737 - cytoplasm, GO:0030060 - L-malate dehydrogenase activity, GO:0010319 - stromule, GO:0009941 - chloroplast envelope, GO:0005739 - mitochondrion, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0044262 - cellular carbohydrate metabolic process, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0006108 - malate metabolic process, GO:0009507 - chloroplast	TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000432 - temperature response trait, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity, TO:0000168 - abiotic stress trait	PO:0005052 - plant callus , PO:0000025 - root tip , PO:0009005 - root , PO:0009047 - stem , PO:0009066 - anther , PO:0009030 - carpel , PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0020104 - leaf sheath 
16766	_	OsBCH2, BCH2, OsHYD1, HYD1	_	beta-Carotene Hydroxylase 2, carotene beta-ring hydroxylase 1			4	a carotenoid-related heat-responsive gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0578400	LOC_Os04g48880.1				GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0016491 - oxidoreductase activity, GO:0005506 - iron ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0016021 - integral to membrane	TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
16767	RPT5B	OsRpt5b, Rpt5b	19S REGULATORY PARTICLE ATPASE SUBUNIT 5B	19S regulatory particle ATPase subunit 5b, RP triple A-ATPase 5b	19S REGULATORY PARTICLE ATPASE SUBUNIT 5B		6	a ubiquitin-proteasome system (UPS) gene. a 19S regulatory particle subunit from the rice 26S proteasome. C71991. AB071016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0173100	LOC_Os06g07630.1	GR:0061410			GO:0030163 - protein catabolic process, GO:0000502 - proteasome complex, GO:0005737 - cytoplasm, GO:0009408 - response to heat, GO:0017111 - nucleoside-triphosphatase activity, GO:0005524 - ATP binding	TO:0000432 - temperature response trait	
16768	_		_	proteasome			9	a ubiquitin-proteasome system (UPS) gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0560200	LOC_Os09g38730.1				GO:0017111 - nucleoside-triphosphatase activity, GO:0009408 - response to heat, GO:0005524 - ATP binding	TO:0000432 - temperature response trait	
16769	_	DHQS, OsDHQS	_	3-dehydroquinate synthase			9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0539100	LOC_Os09g36800.1				GO:0003856 - 3-dehydroquinate synthase activity, GO:0009411 - response to UV, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0005794 - Golgi apparatus, GO:0009570 - chloroplast stroma, GO:0005768 - endosome, GO:0005802 - trans-Golgi network	TO:0000160 - UV light sensitivity	
16770	_	DHQDT/SDH, OsDHQDT/SDH, OsDHQDT, OsSDH, DHQDT, SDH, DHQ/SDH-1	_	3-dehydroquinate dehydratase/shikimate dehydrogenase			1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0375200	LOC_Os01g27750.1				GO:0009411 - response to UV, GO:0003855 - 3-dehydroquinate dehydratase activity, GO:0004764 - shikimate 5-dehydrogenase activity	TO:0000160 - UV light sensitivity	
16771	_	DHQDT/SDH	_	3-dehydroquinate dehydratase/shikimate dehydrogenase			12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0534000	LOC_Os12g34874.1, LOC_Os12g34874.2, LOC_Os12g34874.3				GO:0009411 - response to UV, GO:0009793 - embryonic development ending in seed dormancy, GO:0009570 - chloroplast stroma	TO:0000160 - UV light sensitivity	
16772	CS	OsCS	CHORISMATE SYNTHASE	chorismate synthase	CHORISMATE SYNTHASE		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0254800	LOC_Os03g14990.1				GO:0009411 - response to UV, GO:0004107 - chorismate synthase activity, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009570 - chloroplast stroma, GO:0009423 - chorismate biosynthetic process, GO:0005730 - nucleolus	TO:0000160 - UV light sensitivity	
16773	CM	OsCM	CHORISMATE MUTASE	chorismate mutase	CHORISMATE MUTASE		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0764400	LOC_Os01g55870.1				GO:0000162 - tryptophan biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009411 - response to UV, GO:0046417 - chorismate metabolic process, GO:0004106 - chorismate mutase activity	TO:0000160 - UV light sensitivity	
16774	_	ADT	_	arogenate dehydratase			10		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0523700	LOC_Os10g37980.1				GO:0009094 - L-phenylalanine biosynthetic process, GO:0009411 - response to UV, GO:0004664 - prephenate dehydratase activity	TO:0000160 - UV light sensitivity	
16775	IGPS	OsIGPS, TRPC, OsTRPC	INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE	indole-3-glycerol phosphate synthase	INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE		9		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os09g0255400	LOC_Os09g08130.1, LOC_Os09g08130.2				GO:0009414 - response to water deprivation, GO:0004425 - indole-3-glycerol-phosphate synthase activity, GO:0009411 - response to UV, GO:0046686 - response to cadmium ion, GO:0046689 - response to mercury ion, GO:0010038 - response to metal ion, GO:0051607 - defense response to virus, GO:0006568 - tryptophan metabolic process	TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance, TO:0000160 - UV light sensitivity, TO:0000034 - chromium sensitivity	
16776	_	TS	_	tryptophan synthase			8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0135900	LOC_Os08g04180.1				GO:0009411 - response to UV, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0005886 - plasma membrane, GO:0004834 - tryptophan synthase activity	TO:0000160 - UV light sensitivity	
16777	_	TS	_	tryptophan synthase			6	a tryptophan synthase beta chain.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0632200	LOC_Os06g42560.4, LOC_Os06g42560.3, LOC_Os06g42560.2, LOC_Os06g42560.1				GO:0000162 - tryptophan biosynthetic process, GO:0009411 - response to UV, GO:0030170 - pyridoxal phosphate binding, GO:0004834 - tryptophan synthase activity	TO:0000160 - UV light sensitivity, TO:0002673 - amino acid content	
16778	_	OsC4H, C4H	_	cytochrome P450, CINNAMATE-4-HYDROXYLASE			2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0467000	LOC_Os02g26770.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009411 - response to UV, GO:0001666 - response to hypoxia, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0009809 - lignin biosynthetic process	TO:0000015 - oxygen sensitivity, TO:0000160 - UV light sensitivity	
16779	PKS2	CHS, OsPKS02, OsPKS2, PKS02, OsCHS2, CHS2	POLYKETIDE SYNTHASE 2	Chalcone synthase, polyketide synthase 2, Chalcone synthase 2	POLYKETIDE SYNTHASE 2		4		 Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0103900	LOC_Os04g01354.1				GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009718 - anthocyanin biosynthetic process, GO:0009411 - response to UV, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0030639 - polyketide biosynthetic process	TO:0000160 - UV light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009005 - root 
16780	PKS12	CHS, OsPKS12, OsCHS12, CHS12	POLYKETIDE SYNTHASE 12	Chalcone synthase, polyketide synthase 12, Chalcone synthase 12	POLYKETIDE SYNTHASE 12		7		 Coloration - Anthocyanin,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0501100	LOC_Os07g31770.1				GO:0009409 - response to cold, GO:0009411 - response to UV, GO:0009651 - response to salt stress, GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009718 - anthocyanin biosynthetic process	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000160 - UV light sensitivity	PO:0009005 - root 
16781	CHI7	CHI, OsCHI, OsCHI7, OsCHIL2, CHIL2	CHALCONE ISOMERASE 7	chalcone isomerase, Chalcone-flavonone isomerase, CHI-LIKE2, CHALCONE ISOMERASE-LIKE2	CHALCONE ISOMERASE 7		12	GO:0080167: response to karrikin. PO:0030123: panicle inflorescence.	 Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0115700	LOC_Os12g02370.4, LOC_Os12g02370.2				GO:0009411 - response to UV, GO:0009735 - response to cytokinin stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0000167 - activation of MAPKKK activity involved in osmosensory signaling pathway, GO:0050832 - defense response to fungus, GO:0009718 - anthocyanin biosynthetic process, GO:0046688 - response to copper ion, GO:0045430 - chalcone isomerase activity, GO:0009737 - response to abscisic acid stimulus, GO:0010224 - response to UV-B, GO:0006952 - defense response	TO:0000074 - blast disease, TO:0000021 - copper sensitivity, TO:0000112 - disease resistance, TO:0000160 - UV light sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence 
16782	CHI6	CHI, OsCHI6, OsCHIL1, CHIL1	CHALCONE ISOMERASE 6	chalcone isomerase, CHI-LIKE1, CHALCONE ISOMERASE-LIKE1	CHALCONE ISOMERASE 6		11	probable chalcone-flavonone isomerase 3 in Chen et al. 2019.	 Biochemical character,  Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance	Os11g0116300	LOC_Os11g02440.1				GO:0009813 - flavonoid biosynthetic process, GO:0045430 - chalcone isomerase activity, GO:0009735 - response to cytokinin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009411 - response to UV, GO:0009718 - anthocyanin biosynthetic process	TO:0000160 - UV light sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0025034 - leaf , PO:0009047 - stem 
16783	2ODD17	FLS, 2-ODD17, Os2-ODD17, Os2ODD17, OsFLS3, FLS3	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 17	flavonol synthase, 2-oxoglutarate-dependent dioxygenase 17	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 17		10	OsFLS3 in Wang et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0559500	LOC_Os10g41020.1				GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009411 - response to UV, GO:0009753 - response to jasmonic acid stimulus	TO:0000160 - UV light sensitivity, TO:0000172 - jasmonic acid sensitivity	
16784	2ODD2	FLS, 2-ODD2, Os2-ODD2, Os2ODD2, OsF3H, F3H, F3H2, OsF3H2, OsF3H03g, F3H03g, OsSAH1, SAH1, OsF3H1, F3H1	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 2	flavonol synthase, 2-oxoglutarate-dependent dioxygenase 2, flavanone 3-hydroxylase, SA hydroxylase 1, salicylic acid hydroxylase 1	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 2		3	F3H2 in Liu et al. 2020. OsF3H1 in Wang et al. 2022.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Disease resistance,  Coloration - Anthocyanin,  Tolerance and resistance - Insect resistance	Os03g0122300	LOC_Os03g03034.5, LOC_Os03g03034.4, LOC_Os03g03034.3, LOC_Os03g03034.2, LOC_Os03g03034.1				GO:0051553 - flavone biosynthetic process, GO:0046872 - metal ion binding, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0046244 - salicylic acid catabolic process, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009620 - response to fungus, GO:0002213 - defense response to insect, GO:0009617 - response to bacterium, GO:0009411 - response to UV, GO:0010224 - response to UV-B, GO:0051213 - dioxygenase activity, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009718 - anthocyanin biosynthetic process	TO:0000160 - UV light sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000290 - flavonoid content, TO:0000424 - brown planthopper resistance, TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000326 - leaf color	PO:0009006 - shoot system 
16785	DFR4	DHFR, OsDFR4	DIHYDROFLAVONOL 4-REDUCTASE 4	dihydroflavonol 4-reductase, dihydroflavonol 4-reductase 4	DIHYDROFLAVONOL 4-REDUCTASE 4		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0601100	LOC_Os07g40986.1, LOC_Os07g40986.2				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0044237 - cellular metabolic process, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	PO:0009049 - inflorescence 
16786	DFR5	DHFR, OsDFR5	DIHYDROFLAVONOL 4-REDUCTASE 5	dihydroflavonol 4-reductase, dihydroflavonol 4-reductase 5	DIHYDROFLAVONOL 4-REDUCTASE 5		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0602000	LOC_Os07g41070.1				GO:0009411 - response to UV, GO:0009753 - response to jasmonic acid stimulus, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process	TO:0000172 - jasmonic acid sensitivity, TO:0000160 - UV light sensitivity	PO:0009049 - inflorescence 
16787	_	DHFR, OsDFR3, DFR3	_	dihydroflavonol 4-reductase, NADPH HC-toxin reductase, dihydroflavonol 4-reductase 3			6	D29716. OsDFR3 in Wang et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0651000	LOC_Os06g44170.1, LOC_Os06g44170.2				GO:0009753 - response to jasmonic acid stimulus, GO:0050662 - coenzyme binding, GO:0044237 - cellular metabolic process, GO:0009411 - response to UV, GO:0003824 - catalytic activity, GO:0009733 - response to auxin stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000160 - UV light sensitivity, TO:0000163 - auxin sensitivity	PO:0025034 - leaf 
16788	COMT20	OMT, OsCOMT20	CAFFEIC ACID O-METHYLTRANSFERASE 20	O-methyltransferase, Caffeic Acid O-Methyltransferase 20	CAFFEIC ACID O-METHYLTRANSFERASE 20		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0303600	LOC_Os11g19840.1				GO:0008171 - O-methyltransferase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009411 - response to UV, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0006001 - salt tolerance	PO:0025034 - leaf 
16791	NTMC2T6.2	OsNTMC2T6.2, OsC2DP15, C2DP15	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.2	C2 domain containing protein, N-terminal-TM-C2 domain protein 6.2, N-terminal trans- membrane and C2 domain protein 6.2, NTMC2 type 6.2 protein, NTMC2 family gene 6.2, C2 Domain-Containing Protein 15	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.2		2	a calcium-signaling component.	 Tolerance and resistance - Stress tolerance	Os02g0313700	LOC_Os02g20970.1				GO:0009651 - response to salt stress, GO:0005783 - endoplasmic reticulum, GO:0009411 - response to UV, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	
16792	MRLK48	OsMRLK48	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 48	SHR5-receptor-like kinase	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 48		8	a rice ortholog of Arabidopsis SHR5.	 Tolerance and resistance - Stress tolerance	Os08g0203700	LOC_Os08g10330.1				GO:0009411 - response to UV, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000160 - UV light sensitivity	
16793	_		_	Leucine-rich repeat-containing protein kinase family protein			4		 Tolerance and resistance - Stress tolerance	Os04g0616600	LOC_Os04g52630.1				GO:0009411 - response to UV, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000160 - UV light sensitivity	
16794	MRLK26	OsMRLK26	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 26	SHR5-receptor-like kinase	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 26		5		 Tolerance and resistance - Stress tolerance	Os05g0261700	LOC_Os05g17604.1, LOC_Os05g17604.2, LOC_Os05g17604.3, LOC_Os05g17604.4, LOC_Os05g17604.5, LOC_Os05g17604.6				GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16795	GDI4	OsGDI4	GDP DISSOCIATION INHIBITOR 4	Rab GDP dissociation inhibitor alpha, guanine nucleotide-dissociation inhibitor 4	GDP DISSOCIATION INHIBITOR 4		7	RabGDI family. NADB domain containing protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os07g0271000	LOC_Os07g16970.1, LOC_Os07g16970.2				GO:0005093 - Rab GDP-dissociation inhibitor activity, GO:0015031 - protein transport, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	PO:0009029 - stamen , PO:0006000 - caryopsis hull , PO:0009049 - inflorescence 
16796	_		_	ranbp1 domain containing protein			3		 Tolerance and resistance - Stress tolerance	Os03g0292800	LOC_Os03g18180.1				GO:0046907 - intracellular transport, GO:0009411 - response to UV	TO:0000160 - UV light sensitivity	
16797	UGT74J5	UDP-GT, Os79, OsUGT74J5	UDP-GLUCOSYLTRANSFERASE 74J5	UDP-glucuronyl transferase, UDP-glucosyltransferase, UDP-glucosyltransferase 74J5	UDP-GLUCOSYLTRANSFERASE 74J5		4	BF889487. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0206600	LOC_Os04g12970.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0009314 - response to radiation, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000161 - radiation response trait	PO:0009082 - spikelet floret , PO:0009072 - plant ovary , PO:0009037 - lemma , PO:0009038 - palea , PO:0009005 - root 
16798	_	UDP-GT, OsENOD93-1	_	UDP-glucuronyl transferase, early nodulin 93 gene 1			6	LOC_Os06g05010. TO:0020093: nitrogen content. TO:0000905: seed yield.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0142350	LOC_Os06g05010.1, LOC_Os06g05010.2				GO:0043562 - cellular response to nitrogen levels, GO:0006995 - cellular response to nitrogen starvation, GO:0005739 - mitochondrion, GO:0009314 - response to radiation, GO:0006865 - amino acid transport	TO:0000011 - nitrogen sensitivity, TO:0002673 - amino acid content, TO:0000161 - radiation response trait	
16799	SUI1	UNP1, OsSUI1	SUPPRESSOR OF INITIATOR CODON MUTATION 1	suppressor of initiator codon mutation 1	SUPPRESSOR OF INITIATOR CODON MUTATION 1		4	EEC79466.1 (indica SUI1).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0627900	LOC_Os04g53606.1				GO:0003743 - translation initiation factor activity, GO:0042127 - regulation of cell proliferation, GO:0048437 - floral organ development, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009314 - response to radiation	TO:0006013 - carpel number, TO:0000303 - cold tolerance, TO:0000161 - radiation response trait, TO:0000209 - palea number, TO:0006038 - floral organ number, TO:0000276 - drought tolerance, TO:0000225 - stamen number, TO:0000208 - lemma number, TO:0006022 - floral organ development trait	PO:0009073 - stigma , PO:0009089 - endosperm , PO:0009066 - anther , PO:0020139 - leaf midvein , PO:0020138 - leaf lamina vein , PO:0020142 - stem internode , PO:0000055 - bud , PO:0009005 - root 
16800	EIF6;2	Os-eIF6;2, eIF6;2, OseIF6.2, eIF6.2	EUKARYOTIC TRANSLATION INITIATION FACTOR 6;2	eukaryotic translation initiation factor 6;2	EUKARYOTIC TRANSLATION INITIATION FACTOR 6;2		1	TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance	Os01g0280500	LOC_Os01g17330.1, LOC_Os01g17330.2				GO:0003743 - translation initiation factor activity, GO:0005730 - nucleolus, GO:0060359 - response to ammonium ion, GO:0009314 - response to radiation, GO:0043023 - ribosomal large subunit binding, GO:0042256 - mature ribosome assembly, GO:0042273 - ribosomal large subunit biogenesis, GO:0007229 - integrin-mediated signaling pathway, GO:0043022 - ribosome binding, GO:0005737 - cytoplasm, GO:0010167 - response to nitrate	TO:0000161 - radiation response trait	
16801	_	GID1, GID1L2	_	ga insensitive dwarf1, ga insensitive dwarf 1			3	GID1L2 in Li et al. 2016. LOC_Os03g57640. GA receptor.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0790500	LOC_Os03g57640.1				GO:0009314 - response to radiation, GO:0008152 - metabolic process, GO:0016787 - hydrolase activity	TO:0000161 - radiation response trait	
16802	_	UNP2	_				12	LOC_Os12g27930.	 Tolerance and resistance - Stress tolerance	Os12g0465000	LOC_Os12g27930.1				GO:0009314 - response to radiation	TO:0000161 - radiation response trait	
16804	_	OsFbox001, OsFbox1, Os_F0615, OsFBX1, OsFBX1, FBX1	_	F-box protein 1, F-box-type E3 ubiquitin ligase X1			1	LOC_Os01g05880. Os_F0615 in Hua et al. 2011. OsFBX1 in TIGR rice genome annotation.		Os01g0152100	LOC_Os01g05880.1						
16805	FBOX2	OsFbox002, OsFbox2, OsH2B.6, H2B.6	F-BOX PROTEIN 2	F-box protein 2, Histone H2B.6	F-BOX PROTEIN 2		1	Q9LGH4.	 Other	Os01g0153100	LOC_Os01g05970.1				GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0003677 - DNA binding		
16806	_	OsFbox003, OsFbox3, Os_F0209, OsFBX3, OsFBX3, FBX3	_	F-box protein 3, F-box-type E3 ubiquitin ligase X3			1	LOC_Os01g07160. Os_F0209 in Hua et al. 2011. OsFBX3 in TIGR rice genome annotation.		Os01g0165666	LOC_Os01g07160.1						
16807	_	OsFbox004, OsFbox4, Os_F0387, OsFBDUF1, FBDUF1	_	F-box protein 4, F-box-type E3 ubiquitin ligase FBDUF1			1	LOC_Os01g08830. Os_F0387 in Hua et al. 2011.		Os01g0183800	LOC_Os01g08830.1, LOC_Os01g08830.2						
16808	_	OsFbox005, OsFbox5, Os_F0747, OsFBX4, OsFBX4, FBX4	_	F-box protein 5, F-box-type E3 ubiquitin ligase X4			1	Os_F0747 in Hua et al. 2011. OsFBX4 in TIGR rice genome annotation.		Os01g0244900	LOC_Os01g14270.1						
16809	FBOX6	OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12, OsFBX5, FBX5	F-BOX PROTEIN 6	F-box protein 6, F-box-type E3 ubiquitin ligase X5	F-BOX PROTEIN 6		1	Os_F0083 in Hua et al. 2011. miR1439-target. OsFBX5 in TIGR rice genome annotation. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0281000	LOC_Os01g17390.1						PO:0009066 - anther 
16810	_	OsFbox007, OsFbox7, Os_F0351	_	F-box protein 7			1	LOC_Os01g22400 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0351 in Hua et al. 2011.									
16811	_	OsFbox008, OsFbox8, Os_F0329, OsFBDUF3, FBDUF3	_	F-box protein 8, F-box-type E3 ubiquitin ligase FBDUF3			1	LOC_Os01g22430. Os_F0329 in Hua et al. 2011.		Os01g0327900	LOC_Os01g22430.1						
16812	_	OsFbox009, OsFbox9, Os_F0616, OsFBDUF4, FBDUF4	_	F-box protein 9, F-box-type E3 ubiquitin ligase FBDUF4			1	LOC_Os01g22480. Os_F0616 in Hua et al. 2011.		Os01g0328300	LOC_Os01g22480.1, LOC_Os01g22480.2						
16813	_	OsFbox010, OsFbox10, Os_F0156, OsFBX6, OsFBX6, FBX6	_	F-box protein 10, F-box-type E3 ubiquitin ligase X6			1	LOC_Os01g28150. Os_F0156 in Hua et al. 2011. OsFBX6 in TIGR rice genome annotation.		Os01g0379400	LOC_Os01g28150.1, LOC_Os01g28150.2						
16814	FBOX11	OsFbox011, OsFbox11, Os_F0196, OsFBX7, FBX7, OsFBX7, FBX7	F-BOX PROTEIN 11	F-box protein 11, F-box-type E3 ubiquitin ligase X7	F-BOX PROTEIN 11		1	Os_F0196 in Hua et al. 2011. OsFBX7 in TIGR rice genome annotation. a predicted target of miR1871.		Os01g0380800	LOC_Os01g28300.1						PO:0009010 - seed 
16815	_	OsFbox012, OsFbox12, Os_F0539, OsFBX8	_	F-box protein 12			1	LOC_Os01g28520. Os_F0539 in Hua et al. 2011. OsFBX8 in TIGR rice genome annotation.			LOC_Os01g28520						
16816	_	OsFbox013, OsFbox13, Os_F0590, OsFBX10, OsFBX10, FBX10	_	F-box protein 13, F-box-type E3 ubiquitin ligase X10			1	LOC_Os01g33490. Os_F0590 in Hua et al. 2011. OsFBX10 in TIGR rice genome annotation.		Os01g0519100	LOC_Os01g33490.1						
16817	_	OsFbox014, OsFbox14, Os_F0467, OsFBX11, OsFBX11, FBX11	_	F-box protein 14, F-box-type E3 ubiquitin ligase X11			1	LOC_Os01g34220. Os_F0467 in Hua et al. 2011. OsFBX11 in TIGR rice genome annotation.		Os01g0526550	LOC_Os01g34220.1						
16818	_	OsFbox015, OsFbox15, Os_F0481, OsFBX12, OsFBX12, FBX12	_	F-box protein 15, F-box-type E3 ubiquitin ligase X12			1	LOC_Os01g34270. Os_F0481 in Hua et al. 2011. OsFBX12 in TIGR rice genome annotation.		Os01g0526900	LOC_Os01g34270.1						
16819	_	OsFbox016, OsFbox16, Os_F0471, OsFBX13, OsFBX13, FBX13	_	F-box protein 16, F-box-type E3 ubiquitin ligase X13			1	LOC_Os01g36940. Os_F0471 in Hua et al. 2011. OsFBX13 in TIGR rice genome annotation.		Os01g0550200	LOC_Os01g36940.1						
16820	_	OsFbox017, OsFbox17, Os_F0392, OsFBX14, FBX14	_	F-box protein 17, F-box-type E3 ubiquitin ligase X14			1	LOC_Os01g37260. Os_F0392 in Hua et al. 2011.		Os01g0553400	LOC_Os01g37260.1, LOC_Os01g37260.2						
16821	_	OsFbox018, OsFbox18, Os_F0259, OsFBX15, FBX15	_	F-box protein 18, F-box-type E3 ubiquitin ligase X15			1	LOC_Os01g37670. Os_F0259 in Hua et al. 2011.		Os01g0557400	LOC_Os01g37670.1						
16822	_	OsFbox020, OsFbox20, Os_F0674, OsFBX16, FBX16	_	F-box protein 20, F-box-type E3 ubiquitin ligase X16			1	LOC_Os01g40160. Os_F0674 in Hua et al. 2011.		Os01g0583800	LOC_Os01g40160.1						
16823	_	OsFbox021, OsFbox21, Os_F0117	_	F-box protein 21			1	LOC_Os01g41250. Os_F0117 in Hua et al. 2011.	 Biochemical character		LOC_Os01g41250				GO:0016829 - lyase activity		
16824	_	OsFbox022, OsFbox22, Os_F0366, OsFBD2, FBD2	_	F-box protein 22, F-box-type E3 ubiquitin ligase D2			1	LOC_Os01g41260. Os_F0366 in Hua et al. 2011.	 Biochemical character	Os01g0595800	LOC_Os01g41260.1				GO:0016829 - lyase activity		
16825	_	OsFbox023, OsFbox23, Os_F0211, OsSTA20, OsFBD3, FBD3	_	F-box protein 23, F-box-type E3 ubiquitin ligase D3			1	LOC_Os01g41270. Os_F0211 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os01g0595900	LOC_Os01g41270.1				GO:0016829 - lyase activity		PO:0009066 - anther 
16826	_	OsFbox024, OsFbox24, Os_F0087	_	F-box protein 24			1	LOC_Os01g41280. Os_F0087 in Hua et al. 2011.			LOC_Os01g41280						
16827	_	OsFbox026, OsFbox26, Os_F0242, OsFBX18, FBX18	_	F-box protein 26, F-box-type E3 ubiquitin ligase X18			1	LOC_Os01g41310. Os_F0242 in Hua et al. 2011.	 Biochemical character	Os01g0596300	LOC_Os01g41310.1				GO:0016829 - lyase activity		
16828	_	OsFbox027, OsFbox27, Os_F0595, OsFBL1, FBL1	_	F-box protein 27, F-box-type E3 ubiquitin ligase L1			1	LOC_Os01g41340. Os_F0595 in Hua et al. 2011.	 Biochemical character	Os01g0596500	LOC_Os01g41340.1				GO:0016829 - lyase activity		
16829	_	OsFbox028, OsFbox28, Os_F0158, OsFBL2, FBL2	_	F-box protein 28, F-box-type E3 ubiquitin ligase L2			1	LOC_Os01g41530. Os_F0158 in Hua et al. 2011.		Os01g0598400	LOC_Os01g41530.1						
16830	_	OsFbox029, OsFbox29, Os_F0384, OsFBX482, FBX482	_	F-box protein 29, F-box-type E3 ubiquitin ligase X482			1	LOC_Os01g45020. Os_F0384 in Hua et al. 2011.		Os01g0637100	LOC_Os01g45020.1, LOC_Os01g45020.2						
16831	_	OsFbox030, OsFbox30, Os_F0577, OsFBX19, FBX19	_	F-box protein 30, F-box-type E3 ubiquitin ligase X19			1	LOC_Os01g45650. Os_F0577 in Hua et al. 2011.		Os01g0644100	LOC_Os01g45650.1						
16832	_	OsFbox031, OsFbox31, Os_F0326, OsFBX20, FBX20	_	F-box protein 31, F-box-type E3 ubiquitin ligase X20			1	LOC_Os01g45900. Os_F0326 in Hua et al. 2011.		Os01g0647000	LOC_Os01g45900.1						
16833	_	OsFbox032, OsFbox32, Os_F0271, OsFBX21, FBX21	_	F-box protein 32, F-box-type E3 ubiquitin ligase X21			1	LOC_Os01g46500. Os_F0271 in Hua et al. 2011.		Os01g0653700	LOC_Os01g46500.1, LOC_Os01g46500.2, LOC_Os01g46500.3, LOC_Os01g46500.4						
16834	FBOX33	OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1, OsFBK1, FBK1	F-BOX PROTEIN 33	F-box protein 33, F-box Kelch 1, F-box-type E3 ubiquitin ligase K1	F-BOX PROTEIN 33		1	Os_F0114 in Hua et al. 2011. Os01g47050 is one of the Arabidopsis HWS orthologues which is able to complement hws-1 mutant plants (Yu et al. 2015). TO:1000022: anther morphology trait. TO:0000862: floral organ morphology trait. PO:0025610: stem hypodermis. TO:0000975: grain width. TO:0002741: grain surface area. TO:0011008: stigma length. 	 Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os01g0659900	LOC_Os01g47050.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0005634 - nucleus, GO:0048653 - anther development, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009908 - flower development, GO:0048437 - floral organ development, GO:0009733 - response to auxin stimulus, GO:0009808 - lignin metabolic process, GO:0048364 - root development, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0052386 - cell wall thickening	TO:0000225 - stamen number, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000227 - root length, TO:0000397 - grain size, TO:0000447 - filled grain number, TO:0000391 - seed size, TO:0000734 - grain length, TO:0000269 - 100-seed weight, TO:0006029 - glume number, TO:0002600 - flower organ size, TO:0006038 - floral organ number, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000371 - yield trait, TO:0000421 - pollen fertility, TO:0006013 - carpel number, TO:0000564 - spikelet width, TO:0000625 - spikelet density, TO:0000531 - anther length, TO:0000657 - spikelet anatomy and morphology trait, TO:0000622 - flower development trait, TO:0000357 - growth and development trait, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0007615 - flower development stage , PO:0000040 - adventitious root nodule , PO:0009013 - portion of meristem tissue , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0009046 - flower , PO:0006023 - bundle sheath , PO:0001004 - anther development stage , PO:0025585 - floral organ formation stage , PO:0009072 - plant ovary , PO:0025178 - stem epidermis , PO:0004010 - meristematic cell , PO:0009010 - seed , PO:0025545 - anther wall tapetum cell , PO:0009066 - anther , PO:0025281 - pollen 
16835	_	OsFbox035, OsFbox35, Os_F0556, OsFBX22, FBX22	_	F-box protein 35, F-box-type E3 ubiquitin ligase X22			1	LOC_Os01g52970. Os_F0556 in Hua et al. 2011.	 Biochemical character	Os01g0730100	LOC_Os01g52970.1				GO:0016829 - lyase activity		
16836	_	OsFbox036, OsFbox36, Os_F0051, OsFBX23, FBX23	_	F-box protein 36, F-box-type E3 ubiquitin ligase X23			1	LOC_Os01g52980. Os_F0051 in Hua et al. 2011.		Os01g0730200	LOC_Os01g52980.1						
16837	_	OsFbox037, OsFbox37, Os_F0332, OsFBX24, FBX24	_	F-box protein 37, F-box-type E3 ubiquitin ligase X24			1	LOC_Os01g54850. Os_F0332 in Hua et al. 2011.		Os01g0752100	LOC_Os01g54850.1						
16838	_	OsFbox038, OsFbox38, Os_F0519	_	F-box protein 38			1	LOC_Os01g55210. Os_F0519 in Hua et al. 2011.			LOC_Os01g55210						
16839	_	OsFbox040, OsFbox40, Os_F0476, OsFBX26, FBX26	_	F-box protein 40, F-box-type E3 ubiquitin ligase X26			1	LOC_Os01g56390. Os_F0476 in Hua et al. 2011.		Os01g0770400	LOC_Os01g56390.1						
16840	_	OsFbox041, OsFbox41, Os_F0730	_	F-box protein 41			1	LOC_Os01g56710. Os_F0730 in Hua et al. 2011.			LOC_Os01g56710						
16841	_	OsFbox042, OsFbox42, Os_F0608	_	F-box protein 42			1	LOC_Os01g56740. Os_F0608 in Hua et al. 2011.			LOC_Os01g56740						
16842	_	OsFbox043, OsFbox43, Os_F0563, OsFBDUF8, FBDUF8	_	F-box protein 43, F-box-type E3 ubiquitin ligase FBDUF8			1	LOC_Os01g56750. Os_F0563 in Hua et al. 2011.		Os01g0774400	LOC_Os01g56750.1						
16843	_	OsFbox044, OsFbox44, Os_F0491, OsFBL3, FBL3	_	F-box protein 44, F-box-type E3 ubiquitin ligase L3			1	LOC_Os01g57920. Os_F0491 in Hua et al. 2011.		Os01g0789000	LOC_Os01g57920.1						
16844	_	OsFbox045, OsFbox45, Os_F0307, OsFBX27, FBX27	_	F-box protein 45, F-box-type E3 ubiquitin ligase X27			1	Os_F0307 in Hua et al. 2011.		Os01g0806200	LOC_Os01g59180.1						
16845	_	OsFbox046, OsFbox46, Os_F0609, OsFBX28, FBX28	_	F-box protein 46, F-box-type E3 ubiquitin ligase X28			1	LOC_Os01g59690. Os_F0609 in Hua et al. 2011.		Os01g0812200	LOC_Os01g59690.1						
16846	_	OsFbox047, OsFbox47, Os_F0754, OsFBX29, FBX29	_	F-box protein 47, F-box-type E3 ubiquitin ligase X29			1	LOC_Os01g59910. Os_F0754 in Hua et al. 2011.		Os01g0814700	LOC_Os01g59910.1, LOC_Os01g59910.2, LOC_Os01g59910.3, LOC_Os01g59910.4						
16847	_	OsFbox048, OsFbox48, Os_F0202, OsFBX30, FBX30	_	F-box protein 48, F-box-type E3 ubiquitin ligase X30			1	LOC_Os01g60920. Os_F0202 in Hua et al. 2011.		Os01g0824700	LOC_Os01g60920.1						
16848	_	OsFbox049, OsFbox49, Os_F0364, OsFBL5, FBL5	_	F-box protein 49, F-box-type E3 ubiquitin ligase L5			1	LOC_Os01g64030. Os_F0364 in Hua et al. 2011.		Os01g0859600	LOC_Os01g64030.1, LOC_Os01g64030.2, LOC_Os01g64030.3, LOC_Os01g64030.4						
16849	_	OsFbox051, OsFbox51, Os_F0330, OsFBX31, FBX31	_	F-box protein 51, F-box-type E3 ubiquitin ligase X31			1	LOC_Os01g65510. Os_F0330 in Hua et al. 2011.		Os01g0876300	LOC_Os01g65510.1						
16850	WCR1	OsFbox052, OsFbox52, Os_F0755, OsWCR1, OsFBO2, FBO2	WHITE-CORE RATE 1 	F-box protein 52, F-box-type E3 ubiquitin ligase O2		WCR1A, WCR1G	1	Os_F0755 in Hua et al. 2011. GO:1903427: negative regulation of reactive oxygen species biosynthetic process.	 Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm	Os01g0921800	LOC_Os01g69270.1				GO:0009651 - response to salt stress, GO:0043069 - negative regulation of programmed cell death	TO:0000266 - chalky endosperm, TO:0000162 - seed quality, TO:0006001 - salt tolerance	
16851	LC4	OsFbox053, OsFbox53, Os_F0309, OsLC4, OsFBX32, FBX32	LEAF INCLINCATION 4	F-box protein 53, LEAF INCLINCATION4, F-box-type E3 ubiquitin ligase X32			1	LOC_Os01g69940. Os_F0309 in Hua et al. 2011. miR394 target. GO:2000024: regulation of leaf development. TO:0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf	Os01g0923900	LOC_Os01g69940.1				GO:0060776 - simple leaf morphogenesis, GO:0051510 - regulation of unidimensional cell growth, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0010305 - leaf vascular tissue pattern formation, GO:0001558 - regulation of cell growth, GO:0048366 - leaf development, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000206 - leaf angle	PO:0009005 - root , PO:0009010 - seed , PO:0009000 - pulvinus 
16852	_	OsFbox054, OsFbox54, Os_F0420	_	F-box protein 54			1	LOC_Os01g71430. Os_F0420 in Hua et al. 2011.			LOC_Os01g71430						
16853	_	OsFbox055, OsFbox55, Os_F0463, OsFBDUF10, FBDUF10	_	F-box protein 55, F-box-type E3 ubiquitin ligase FBDUF10			1	LOC_Os01g71440. Os_F0463 in Hua et al. 2011.		Os01g0942000	LOC_Os01g71440.1						
16854	_	OsFbox056, OsFbox56, Os_F0469, OsFBX33, FBX33	_	F-box protein 56, F-box-type E3 ubiquitin ligase X33			1	LOC_Os01g71450. Os_F0469 in Hua et al. 2011.		Os01g0942100	LOC_Os01g71450.1						
16855	_	OsFbox057, OsFbox57, Os_F0570, OsFBDUF11, FBDUF11	_	F-box protein 57, F-box-type E3 ubiquitin ligase FBDUF11			1	LOC_Os01g71460. Os_F0570 in Hua et al. 2011.		Os01g0942200	LOC_Os01g71460.1						
16856	FBOX58	OsFbox058, OsFbox58, Os_F0591, DLN37, OsDLN37, CHR707, OsCHR707, OsFBO7, FBO7	F-BOX PROTEIN 58	F-box protein 58, DLN repressor 37, DLN motif protein 37, chromatin remodeling factor 707, F-box-type E3 ubiquitin ligase O7	F-BOX PROTEIN 58		1	Os_F0591 in Hua et al. 2011. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0952200	LOC_Os01g72310.1				GO:0009506 - plasmodesma, GO:0008270 - zinc ion binding, GO:0004386 - helicase activity, GO:0044260 - cellular macromolecule metabolic process, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000074 - blast disease	
16857	_	OsFbox059, OsFbox59, Os_F0692, OsFBL6, FBL6	_	F-box protein 59, F-box-type E3 ubiquitin ligase L6			2	LOC_Os02g01550. Os_F0692 in Hua et al. 2011.		Os02g0105800	LOC_Os02g01550.1, LOC_Os02g01550.2						
16858	_	OsFbox060, OsFbox60, Os_F0125, OsFBK2, FBK2	_	F-box protein 60, F-box-type E3 ubiquitin ligase K2			2	LOC_Os02g02350. Os_F0125 in Hua et al. 2011.		Os02g0114600	LOC_Os02g02350.1, LOC_Os02g02350.2, LOC_Os02g02350.3				GO:0009409 - response to cold		
16859	_	OsFbox061, OsFbox61, Os_F0473, OsFBDUF12, FBDUF12	_	F-box protein 61, F-box-type E3 ubiquitin ligase FBDUF12			2	LOC_Os02g03660. Os_F0473 in Hua et al. 2011.		Os02g0129200	LOC_Os02g03660.1						
16860	_	OsFbox062, OsFbox62, Os_F0282, OsFBX34, FBX34	_	F-box protein 62, F-box-type E3 ubiquitin ligase X34			2	LOC_Os02g03810. Os_F0282 in Hua et al. 2011.		Os02g0130800	LOC_Os02g03810.1						
16861	_	OsFbox063, OsFbox63, Os_F0090, OsFBX35, FBX35	_	F-box protein 63, F-box-type E3 ubiquitin ligase X35			2	LOC_Os02g03910. Os_F0090 in Hua et al. 2011.		Os02g0131900	LOC_Os02g03910.1						
16862	_	OsFbox064, OsFbox64, Os_F0285, OsFBX36, FBX36	_	F-box protein 64, F-box-type E3 ubiquitin ligase X36			2	LOC_Os02g03980. Os_F0285 in Hua et al. 2011.		Os02g0132700	LOC_Os02g03980.1						
16863	_	OsFbox065, OsFbox65, Os_F0311, OsFBX37, FBX37	_	F-box protein 65, F-box-type E3 ubiquitin ligase X37			2	LOC_Os02g04000. Os_F0311 in Hua et al. 2011.		Os02g0132900	LOC_Os02g04000.1						
16864	_	OsFbox067, OsFbox67, Os_F0477, OsFBX38, FBX38	_	F-box protein 67, SCO1 protein, F-box-type E3 ubiquitin ligase X38			2	LOC_Os02g06470. D23448. Os_F0477 in Hua et al. 2011. cytochrome oxidase in Sasaki et al. 1994.		Os02g0159800	LOC_Os02g06470.1						
16865	_	OsFbox068, OsFbox68, Os_F0346, OsFBLD1, FBLD1	_	F-box protein 68, F-box-type E3 ubiquitin ligase FBLD1			2	LOC_Os02g06520. Os_F0346 in Hua et al. 2011.		Os02g0160200	LOC_Os02g06520.1						
16866	_	OsFbox069, OsFbox69, Os_F0227, OsFBD6, FBD6	_	F-box protein 69, F-box-type E3 ubiquitin ligase D6			2	LOC_Os02g08160. Os_F0227 in Hua et al. 2011.		Os02g0178200	LOC_Os02g08160.1						
16867	_	OsFbox070, OsFbox70, Os_F0151, OsFBX39, FBX39	_	F-box protein 70, F-box-type E3 ubiquitin ligase X39			2	LOC_Os02g09580. Os_F0151 in Hua et al. 2011.		Os02g0188900	LOC_Os02g09580.1						
16868	_	OsFbox071, OsFbox71, Os_F0306, OsFBA1, FBA1	_	F-box protein 71, F-box-type E3 ubiquitin ligase A1			2	LOC_Os02g10600. Os_F0306 in Hua et al. 2011.		Os02g0199500	LOC_Os02g10600.1						
16869	FBOX72	OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2, OsFBL7, FBL7	F-BOX PROTEIN 72	F-box protein 72, EIN3-BINDING F-BOX PROTEIN 2, F-box-type E3 ubiquitin ligase L7	F-BOX PROTEIN 72	Osebf2	2	Os_F0508 in Hua et al. 2011.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0200900	LOC_Os02g10700.1				GO:0009409 - response to cold, GO:0009723 - response to ethylene stimulus	TO:0000303 - cold tolerance, TO:0000227 - root length, TO:0000516 - relative root length, TO:0000173 - ethylene sensitivity	
16870	_	OsFbox073, OsFbox73, Os_F0359, OsFBK3, FBK3	_	F-box protein 73, F-box-type E3 ubiquitin ligase K3			2	LOC_Os02g10850. Os_F0359 in Hua et al. 2011.		Os02g0202900	LOC_Os02g10850.1						
16871	_	OsFbox075, OsFbox75, Os_F0514, OsFBX40, FBX40	_	F-box protein 75, F-box-type E3 ubiquitin ligase X40			2	LOC_Os02g15160. Os_F0514 in Hua et al. 2011.		Os02g0249700	LOC_Os02g15160.1						
16872	_	OsFbox077, OsFbox77, Os_F0558	_	F-box protein 77			2	LOC_Os02g16760. Os_F0558 in Hua et al. 2011.			LOC_Os02g16760						
16873	_	OsFbox078, OsFbox78, Os_F0445	_	F-box protein 78			2	LOC_Os02g17180. Os_F0445 in Hua et al. 2011.			LOC_Os02g17180						
16874	_	OsFbox079, OsFbox79, Os_F0641, OsFBX43, FBX43	_	F-box protein 79, F-box-type E3 ubiquitin ligase X43			2	LOC_Os02g17210. Os_F0641 in Hua et al. 2011.		Os02g0272100	LOC_Os02g17210.1						
16875	_	OsFbox080, OsFbox80, Os_F0533, OsFBX44, FBX44	_	F-box protein 80, F-box-type E3 ubiquitin ligase X44			2	LOC_Os02g18630. Os_F0533 in Hua et al. 2011.		Os02g0287900	LOC_Os02g18630.1						
16876	_	OsFbox081, OsFbox81, Os_F0375, OsFBX45, FBX45	_	F-box protein 81, F-box-type E3 ubiquitin ligase X45			2	LOC_Os02g18640. Os_F0375 in Hua et al. 2011.		Os02g0288000	LOC_Os02g18640.1						
16877	_	OsFbox082, OsFbox82, Os_F0509, OsFBX46, FBX46	_	F-box protein 82, F-box-type E3 ubiquitin ligase X46			2	LOC_Os02g19200. Os_F0509 in Hua et al. 2011.		Os02g0294100	LOC_Os02g19200.1						
16878	_	OsFbox083, OsFbox83, Os_F0360, OsFBX47, FBX47	_	F-box protein 83, F-box-type E3 ubiquitin ligase X47			2	LOC_Os02g19540. Os_F0360 in Hua et al. 2011.		Os02g0297900	LOC_Os02g19540.1						
16879	_	OsFbox084, OsFbox84, Os_F0452, OsFBK6, FBK6	_	F-box protein 84, F-box-type E3 ubiquitin ligase K6			2	LOC_Os02g21110. Os_F0452 in Hua et al. 2011.		Os02g0316200	LOC_Os02g21110.1						
16880	_	OsFbox085, OsFbox85, Os_F0602	_	F-box protein 85			2	LOC_Os02g21230. Os_F0602 in Hua et al. 2011.			LOC_Os02g21230						
16881	_	OsFbox086, OsFbox86, Os_F0482, OsFBX48, FBX48	_	F-box protein 86, F-box-type E3 ubiquitin ligase X48			2	LOC_Os02g21240. Os_F0482 in Hua et al. 2011.		Os02g0317300	LOC_Os02g21240.1						
16882	_	OsFbox087, OsFbox87, Os_F0536, OsFBL8, FBL8	_	F-box protein 87, F-box-type E3 ubiquitin ligase L8			2	LOC_Os02g21260. Os_F0536 in Hua et al. 2011.		Os02g0317500	LOC_Os02g21260.1						
16883	_	OsFbox088, OsFbox88, Os_F0475, OsFBX49, FBX49	_	F-box protein 88, F-box-type E3 ubiquitin ligase X49			2	LOC_Os02g27400. Os_F0475 in Hua et al. 2011.		Os02g0474000	LOC_Os02g27400.1						
16884	_	OsFbox089, OsFbox89, Os_F0377, OsFBX50, FBX50	_	F-box protein 89, F-box-type E3 ubiquitin ligase X50			2	Os_F0377 in Hua et al. 2011.		Os02g0487500/Os02g0487701	LOC_Os02g28600.1						
16885	_	OsFbox091, OsFbox91, Os_F0517, OsFBK7, FBK7	_	F-box protein 91, F-box-type E3 ubiquitin ligase K7			2	LOC_Os02g30210. Os_F0517 in Hua et al. 2011.		Os02g0504900	LOC_Os02g30210.1, LOC_Os02g30210.2						
16886	_	OsFbox092, OsFbox92, Os_F0704, OsFBX51, FBX51	_	F-box protein 92, F-box-type E3 ubiquitin ligase X51			2	LOC_Os02g33240. Os_F0704 in Hua et al. 2011.		Os02g0535901	LOC_Os02g33240.1						
16887	_	OsFbox093, OsFbox93, Os_F0270, OsFBD7, FBD7	_	F-box protein 93, F-box-type E3 ubiquitin ligase D7			2	LOC_Os02g33310. Os_F0270 in Hua et al. 2011.		Os02g0536300	LOC_Os02g33310.1						
16888	_	OsFbox094, OsFbox94, Os_F0336, OsFBL9, FBL9	_	F-box protein 94, F-box-type E3 ubiquitin ligase L9			2	LOC_Os02g33400. Os_F0336 in Hua et al. 2011.		Os02g0537200	LOC_Os02g33400.1						
16889	_	OsFbox095, OsFbox95, Os_F0274, OsSTA64, OsFBX52, FBX52	_	F-box protein 95, F-box-type E3 ubiquitin ligase X52			2	LOC_Os02g33840. Os_F0274 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0543200	LOC_Os02g33840.1						PO:0009066 - anther 
16890	_	OsFbox097, OsFbox97, Os_F0402, OsFBX53, FBX53	_	F-box protein 97, F-box-type E3 ubiquitin ligase X53			2	LOC_Os02g35560. Os_F0402 in Hua et al. 2011.		Os02g0563800	LOC_Os02g35560.1						
16891	_	OsFbox098, OsFbox98, Os_F0174, OsFBK9, FBK9	_	F-box protein 98, F-box-type E3 ubiquitin ligase K9			2	LOC_Os02g36520. Os_F0174 in Hua et al. 2011.		Os02g0574900	LOC_Os02g36520.1						
16892	_	OsFbox099, OsFbox99, Os_F0180, OsFBX466, FBX466	_	F-box protein 99, F-box-type E3 ubiquitin ligase X466			2	LOC_Os02g38499. Os_F0180 in Hua et al. 2011.		Os02g0598600	LOC_Os02g38499.1						
16893	_	OsFbox100, OsFBX55, FBX55	_	F-box protein 100, F-box-type E3 ubiquitin ligase X55			2	LOC_Os02g38589. 		Os02g0598900	LOC_Os02g38589.1						
16894	_	OsFbox101, Os_F0678	_	F-box protein 101			2	LOC_Os02g38720. Os_F0678 in Hua et al. 2011.			LOC_Os02g38720						
16895	_	OsFbox102, Os_F0177, OsFBO12, FBO12	_	F-box protein 102, F-box-type E3 ubiquitin ligase O12			2	LOC_Os02g38720. Os_F0678 in Hua et al. 2011.		Os02g0630000	LOC_Os02g41910.1						
16896	_	OsFbox103, Os_F0039, OsFBX57, FBX57	_	F-box protein 103, F-box-type E3 ubiquitin ligase X57			2	LOC_Os02g41930. Os_F0039 in Hua et al. 2011.		Os02g0630200	LOC_Os02g41930.1						
16897	_	OsFbox105, Os_F0549, OsFBX58, FBX58	_	F-box protein 105, F-box-type E3 ubiquitin ligase X58			2	LOC_Os02g45320. Os_F0549 in Hua et al. 2011.		Os02g0675800	LOC_Os02g45320.1						
16898	_	OsFbox106, Os_F0496, OsFBD8, FBD8	_	F-box protein 106, F-box-type E3 ubiquitin ligase D8			2	LOC_Os02g46690. Os_F0496 in Hua et al. 2011.		Os02g0694100	LOC_Os02g46690.1						
16899	_	OsFbox108, Os_F0236, OsFBX60, FBX60	_	F-box protein 108, F-box-type E3 ubiquitin ligase X60			2	LOC_Os02g48300. Os_F0236 in Hua et al. 2011.		Os02g0713500	LOC_Os02g48300.1						
16900	_	OsFbox109, Os_F0628, OsFBK10, FBK10	_	F-box protein 109, F-box-type E3 ubiquitin ligase K10			2	LOC_Os02g51350. Os_F0628 in Hua et al. 2011.		Os02g0748300	LOC_Os02g51350.1						
16901	_	OsFbox110, Os_F0551, OsFBX61, FBX61	_	F-box protein 110, F-box-type E3 ubiquitin ligase X61			2	LOC_Os02g52130. Os_F0551 in Hua et al. 2011.		Os02g0757700	LOC_Os02g52130.1, LOC_Os02g52130.2, LOC_Os02g52130.3, LOC_Os02g52130.4, LOC_Os02g52130.5, LOC_Os02g52130.6, LOC_Os02g52130.7, LOC_Os02g52130.8, LOC_Os02g52130.9						
16902	_	OsFbox111, Os_F0005, OsFBX62, FBX62	_	F-box protein 111, F-box-type E3 ubiquitin ligase X62			2	LOC_Os02g54240. Os_F0005 in Hua et al. 2011.		Os02g0783600	LOC_Os02g54240.1						
16903	_	OsFbox112, Os_F0657	_	F-box protein 112			2	LOC_Os02g54330. Os_F0657 in Hua et al. 2011.			LOC_Os02g54330						
16904	_	OsFbox113, Os_F0234, OsFBX63, FBX63	_	F-box protein 113, F-box-type E3 ubiquitin ligase X63			2	LOC_Os02g54550. Os_F0234 in Hua et al. 2011.		Os02g0786600	LOC_Os02g54550.1						
16905	_	OsFbox114, Os_F0103, OsFBX64, FBX64	_	F-box protein 114, F-box-type E3 ubiquitin ligase X64			2	LOC_Os02g55050. Os_F0103 in Hua et al. 2011.		Os02g0793500	LOC_Os02g55050.1, LOC_Os02g55050.2						
16906	_	OsFbox115, Os_F0639, OsFBX65, FBX65	_	F-box protein 115, F-box-type E3 ubiquitin ligase X65			2	LOC_Os02g56750. Os_F0639 in Hua et al. 2011.		Os02g0812500	LOC_Os02g56750.1						
16907	_	OsFbox116, Os_F0291, OsFBX66, FBX66	_	F-box protein 116, F-box-type E3 ubiquitin ligase X66			2	LOC_Os02g56760. Os_F0291 in Hua et al. 2011.		Os02g0812600	LOC_Os02g56760.1						
16908	_	OsFbox117, Os_F0679, OsFBX67, FBX67	_	F-box protein 117, F-box-type E3 ubiquitin ligase X67			2	Os_F0679 in Hua et al. 2011.		Os02g0812700	LOC_Os02g56770.1						
16909	_	OsFbox118, Os_F0460, OsFBX68, FBX68, OsFBX69, FBX69	_	F-box protein 118, F-box-type E3 ubiquitin ligase X68, F-box-type E3 ubiquitin ligase X69			2	Os_F0460 in Hua et al. 2011.		Os02g0813000/Os02g0813083	LOC_Os02g56810.1						
16910	_	OsFbox119, Os_F0693	_	F-box protein 119			2	Os_F0693 in Hua et al. 2011.		Os02g0813000/Os02g0813166	LOC_Os02g56820.1						
16911	_	OsFbox120, Os_F0441, OsFBX70, FBX70	_	F-box protein 120, F-box-type E3 ubiquitin ligase X70			2	LOC_Os02g56840. Os_F0441 in Hua et al. 2011.		Os02g0813350	LOC_Os02g56840.1						
16912	_	OsFbox121, Os_F0352	_	F-box protein 121			2	LOC_Os02g57860. Os_F0352 in Hua et al. 2011.			LOC_Os02g57860						
16913	_	OsFbox122, Os_F0288, OsFBX72, FBX72	_	F-box protein 122, F-box-type E3 ubiquitin ligase X72			2	LOC_Os02g57890. Os_F0288 in Hua et al. 2011.		Os02g0825301	LOC_Os02g57890.1						
16914	_	OsFbox123, Os_F0289, OsFBX73, FBX73	_	F-box protein 123, F-box-type E3 ubiquitin ligase X73			2	LOC_Os02g57910. Os_F0289 in Hua et al. 2011.		Os02g0825500	LOC_Os02g57910.1						
16915	_	OsFbox124, Os_F0262, OsFBX74, FBX74	_	F-box protein 124, F-box-type E3 ubiquitin ligase X74			2	LOC_Os02g57940. Os_F0262 in Hua et al. 2011.		Os02g0825700	LOC_Os02g57940.1						
16916	_	OsFbox125, Os_F0403, OsFBX75, FBX75	_	F-box protein 125, F-box-type E3 ubiquitin ligase X75			2	Os_F0403 in Hua et al. 2011.		Os02g0826675/Os02g0826700	LOC_Os02g58040.1						
16917	_	OsFbox126, Os_F0788, OsFBX486, FBX486	_	F-box protein 126, F-box-type E3 ubiquitin ligase X486			3	LOC_Os03g02210. Os_F0788 in Hua et al. 2011.		Os03g0113200	LOC_Os03g02210.1						
16918	_	OsFbox127, Os_F0532, OsFBX76, FBX76	_	F-box protein 127, F-box-type E3 ubiquitin ligase X76			3	LOC_Os03g02550. Os_F0532 in Hua et al. 2011.		Os03g0116700	LOC_Os03g02550.1						
16919	_	OsFbox128, Os_F0506, OsFBL10, FBL10	_	F-box protein 128, F-box-type E3 ubiquitin ligase L10			3	LOC_Os03g04270. Os_F0506 in Hua et al. 2011.		Os03g0135400	LOC_Os03g04270.1						
16921	_	OsFbox129, Os_F0178, OsFBK11, FBK11	_	F-box protein 129, F-box-type E3 ubiquitin ligase K11			3	LOC_Os03g07160. Os_F0178 in Hua et al. 2011.		Os03g0167800	LOC_Os03g07160.1						
16922	_	OsFbox131, Os_F0292, OsFBX77, FBX77	_	F-box protein 131, F-box-type E3 ubiquitin ligase X77			3	LOC_Os03g10040. Os_F0292 in Hua et al. 2011.		Os03g0196500	LOC_Os03g10040.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0048831 - regulation of shoot development		
16923	_	OsFbox132, Os_F0228, OsFBX78, FBX78	_	F-box protein 132, F-box-type E3 ubiquitin ligase X78			3	LOC_Os03g10540. Os_F0228 in Hua et al. 2011.		Os03g0202500	LOC_Os03g10540.1, LOC_Os03g10540.2						
16924	_	OsFbox133, Os_F0449, OsFBX79, FBX79	_	F-box protein 133, F-box-type E3 ubiquitin ligase X79			3	LOC_Os03g11790. Os_F0449 in Hua et al. 2011.		Os03g0217200	LOC_Os03g11790.1, LOC_Os03g11790.2, LOC_Os03g11790.3						
16925	_	OsFbox134, Os_F0443, OsFBX80, FBX80	_	F-box protein 134, F-box-type E3 ubiquitin ligase X80			3	LOC_Os03g12190. Os_F0443 in Hua et al. 2011.		Os03g0222200	LOC_Os03g12190.1						
16926	_	OsFbox135, Os_F0341, OsFBX81, FBX81	_	F-box protein 135, F-box-type E3 ubiquitin ligase X81			3	LOC_Os03g12200. Os_F0341 in Hua et al. 2011.		Os03g0222300	LOC_Os03g12200.1						
16927	_	OsFbox136, Os_F0187	_	F-box protein 136			3	LOC_Os03g12940. Os_F0187 in Hua et al. 2011.		Os03g0232000	LOC_Os03g12940.1, LOC_Os03g12940.2, LOC_Os03g12940.3						
16928	_	OsFbox137, Os_F0544, OsFBX82, FBX82	_	F-box protein 137, F-box-type E3 ubiquitin ligase X82			3	LOC_Os03g20500. Os_F0544 in Hua et al. 2011.		Os03g0321300	LOC_Os03g20500.1						
16929	_	OsFbox138, Os_F0340, OsFBX83, FBX83	_	F-box protein 138, F-box-type E3 ubiquitin ligase X83			3	LOC_Os03g22750. Os_F0340 in Hua et al. 2011.		Os03g0350500	LOC_Os03g22750.1						
16930	_	OsFbox140, Os_F0065	_	F-box protein 140			3	LOC_Os03g24200. Os_F0065 in Hua et al. 2011.			LOC_Os03g24200						
16931	_	OsFbox141, Os_F0122, OsFBX86, FBX86	_	F-box protein 141, F-box-type E3 ubiquitin ligase X86			3	Os_F0122 in Hua et al. 2011.		Os03g0366350	LOC_Os03g25080.1						
16932	_	OsFbox142, Os_F0023, OsFBX87, FBX87	_	F-box protein 142, F-box-type E3 ubiquitin ligase X87			3	LOC_Os03g25190. Os_F0023 in Hua et al. 2011.		Os03g0367300	LOC_Os03g25190.1						
16933	_	OsFbox143, Os_F0129, OsFBX88, FBX88	_	F-box protein 143, F-box-type E3 ubiquitin ligase X88			3	LOC_Os03g25220. Os_F0129 in Hua et al. 2011.		Os03g0367400	LOC_Os03g25220.1						
16934	_	OsFbox144, Os_F0237, OsFBX89, FBX89	_	F-box protein 144, F-box-type E3 ubiquitin ligase X89			3	LOC_Os03g25240. Os_F0237 in Hua et al. 2011.		Os03g0367600	LOC_Os03g25240.1						
16935	_	OsFbox145, Os_F0026, OsFBX90, FBX90	_	F-box protein 145, F-box-type E3 ubiquitin ligase X90			3	LOC_Os03g25250. Os_F0026 in Hua et al. 2011.		Os03g0367700	LOC_Os03g25250.1						
16936	_	OsFbox146, Os_F0179, OsFBX91, FBX91	_	F-box protein 146, F-box-type E3 ubiquitin ligase X91			3	LOC_Os03g25640. Os_F0179 in Hua et al. 2011.		Os03g0372900	LOC_Os03g25640.1						
16937	_	OsFbox147, Os_F0266, OsFBX92, FBX92	_	F-box protein 147, F-box-type E3 ubiquitin ligase X92			3	LOC_Os03g25650. Os_F0266 in Hua et al. 2011.		Os03g0373066	LOC_Os03g25650.1						
16938	_	OsFbox148, Os_F0426, OsFBX93, FBX93	_	F-box protein 148, F-box-type E3 ubiquitin ligase X93			3	LOC_Os03g26840. Os_F0426 in Hua et al. 2011.		Os03g0385600	LOC_Os03g26840.1						
16939	_	OsFbox150, Os_F0123, OsFBX94, FBX94	_	F-box protein 150, F-box-type E3 ubiquitin ligase X94			3	LOC_Os03g28130. Os_F0123 in Hua et al. 2011.		Os03g0399400	LOC_Os03g28130.1						
16940	_	OsFbox151, Os_F0222, OsFBK13, FBK13	_	F-box protein 151, F-box-type E3 ubiquitin ligase K13			3	LOC_Os03g30160. Os_F0222 in Hua et al. 2011.		Os03g0415400	LOC_Os03g30160.1						
16941	_	OsFbox152, Os_F0251, OsFBX95, FBX95	_	F-box protein 152, F-box-type E3 ubiquitin ligase X95			3	LOC_Os03g30920. Os_F0251 in Hua et al. 2011.		Os03g0423000	LOC_Os03g30920.1						
16942	_	OsFbox153, OsFBX469, FBX469	_	F-box protein 153, F-box-type E3 ubiquitin ligase X469			3	LOC_Os03g36439. 		Os03g0562200	LOC_Os03g36439.1						
16943	_	OsFbox154, Os_F0130, OsFBDUF15, FBDUF15	_	F-box protein 154, F-box-type E3 ubiquitin ligase FBDUF15			3	LOC_Os03g40370. Os_F0130 in Hua et al. 2011.		Os03g0600800	LOC_Os03g40370.1						
16944	_	OsFbox155, Os_F0503, OsFBX96, FBX96	_	F-box protein 155, F-box-type E3 ubiquitin ligase X96			3	LOC_Os03g43060. Os_F0503 in Hua et al. 2011.		Os03g0629450	LOC_Os03g43060.1						
16945	_	OsFbox156, Os_F0603, OsFBL62, FBL62	_	F-box protein 156, F-box-type E3 ubiquitin ligase L62			3	Os_F0603 in Hua et al. 2011. FBL17a homolog in Wang et al. 2013.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0633100/Os03g0633400	LOC_Os03g43390.1, LOC_Os03g43390.2, LOC_Os03g43390.3, LOC_Os03g43390.4					TO:0000350 - cms-hl type	
16946	_	OsFbox157, Os_F0188, OsFBX97, FBX97	_	F-box protein 157, F-box-type E3 ubiquitin ligase X97			3	LOC_Os03g43770. Os_F0188 in Hua et al. 2011.		Os03g0638900	LOC_Os03g43770.1						
16947	_	OsFbox158, Os_F0008, OsFBX98, FBX98	_	F-box protein 158, F-box-type E3 ubiquitin ligase X98			3	LOC_Os03g44920. Os_F0008 in Hua et al. 2011.		Os03g0652400	LOC_Os03g44920.1						
16948	_	OsFbox159, Os_F0006, OsFBX99, FBX99	_	F-box protein 159, F-box-type E3 ubiquitin ligase X99			3	LOC_Os03g44980. Os_F0006 in Hua et al. 2011.		Os03g0653100	LOC_Os03g44980.1						
16949	_	OsFbox160, Os_F0017	_	F-box protein 160			3	LOC_Os03g46120. Os_F0017 in Hua et al. 2011.			LOC_Os03g46120						
16950	_	OsFbox161, Os_F0076, OsFBX101, FBX101	_	F-box protein 161, F-box-type E3 ubiquitin ligase X101			3	LOC_Os03g46140. Os_F0076 in Hua et al. 2011.		Os03g0664300	LOC_Os03g46140.1						
16951	_	OsFbox162, Os_F0012	_	F-box protein 162			3	LOC_Os03g46500. Os_F0012 in Hua et al. 2011.			LOC_Os03g46500						
16952	_	OsFbox163, Os_F0009, OsFBX103, FBX103	_	F-box protein 163, F-box-type E3 ubiquitin ligase X103			3	LOC_Os03g46510. Os_F0009 in Hua et al. 2011.		Os03g0668000	LOC_Os03g46510.1						
16953	_	OsFbox164, Os_F0040, OsFBX104, FBX104	_	F-box protein 164, F-box-type E3 ubiquitin ligase X104			3	LOC_Os03g46530. Os_F0040 in Hua et al. 2011.		Os03g0668100	LOC_Os03g46530.1						
16954	_	OsFbox165, Os_F0229, OsFbox166, Os_F0438, OsFBX105, FBX105, OsFBX106, FBX106	_	F-box protein 165, F-box protein 166, F-box-type E3 ubiquitin ligase X105, F-box-type E3 ubiquitin ligase X106			3	Os_F0229 in Hua et al. 2011. Os_F0438 in Hua et al. 2011.		Os03g0669900	LOC_Os03g46690.1, LOC_Os03g46720.1						
16956	_	OsFbox167, Os_F0244	_	F-box protein 167			3	LOC_Os03g47420. Os_F0244 in Hua et al. 2011.			LOC_Os03g47420						
16957	_	OsFbox168, Os_F0132, OsFBO16, FBO16	_	F-box protein 168, F-box-type E3 ubiquitin ligase O16			3	LOC_Os03g49250. Os_F0132 in Hua et al. 2011.		Os03g0699600	LOC_Os03g49250.1						
16958	_	OsFbox169, Os_F0378, OsFBDUF16, FBDUF16	_	F-box protein 169, F-box-type E3 ubiquitin ligase FBDUF16			3	LOC_Os03g50050. Os_F0378 in Hua et al. 2011.		Os03g0708200	LOC_Os03g50050.1						
16959	_	OsFbox170, Os_F0296, OsFBDUF17, FBDUF17	_	F-box protein 170, F-box-type E3 ubiquitin ligase FBDUF17			3	LOC_Os03g51090. Os_F0296 in Hua et al. 2011.		Os03g0720400	LOC_Os03g51090.1						
16960	_	OsFbox171, Os_F0153, OsFBX108, FBX108	_	F-box protein 171, F-box-type E3 ubiquitin ligase X108			3	LOC_Os03g51270. Os_F0153 in Hua et al. 2011.		Os03g0722800	LOC_Os03g51270.1						
16961	_	OsFbox172, Os_F0303, OsFBX109, FBX109	_	F-box protein 172, F-box-type E3 ubiquitin ligase X109			3	LOC_Os03g51760. Os_F0303 in Hua et al. 2011.		Os03g0727800	LOC_Os03g51760.1						
16962	_	OsFbox173, Os_F0094, OsFBX110, FBX110	_	F-box protein 173, F-box-type E3 ubiquitin ligase X110			3	LOC_Os03g56440. Os_F0094 in Hua et al. 2011.		Os03g0775800	LOC_Os03g56440.1						
16963	_	OsFbox174, Os_F0714, OsFBX111, FBX111	_	F-box protein 174, F-box-type E3 ubiquitin ligase X111			3	LOC_Os03g56450. Os_F0714 in Hua et al. 2011.		Os03g0775900	LOC_Os03g56450.1						
16964	_	OsFbox175, Os_F0633, OsFBX112, FBX112	_	F-box protein 175, F-box-type E3 ubiquitin ligase X112			3	LOC_Os03g56510. Os_F0633 in Hua et al. 2011.		Os03g0776500	LOC_Os03g56510.1						
16965	_	OsFbox176, Os_F0077, OsFBDUF18, FBDUF18	_	F-box protein 176, F-box-type E3 ubiquitin ligase FBDUF18			3	Os_F0077 in Hua et al. 2011.		Os03g0802100	LOC_Os03g58764.1						
16966	_	OsFbox177, Os_F0120, OsFBDUF19, FBDUF19	_	F-box protein 177, F-box-type E3 ubiquitin ligase FBDUF19			3	LOC_Os03g63850. Os_F0120 in Hua et al. 2011.		Os03g0855500	LOC_Os03g63850.1						
16967	_	OsFbox178, Os_F0705, OsFBX113, FBX113	_	F-box protein 178, F-box-type E3 ubiquitin ligase X113			3	LOC_Os03g64360. Os_F0705 in Hua et al. 2011. AF358762.		Os03g0861800	LOC_Os03g64360.1, LOC_Os03g64360.2, LOC_Os03g64360.3						
16968	_	OsFbox179, Os_F0161, OsFBX114, FBX114	_	F-box protein 179, F-box-type E3 ubiquitin ligase X114			4	LOC_Os04g02280. Os_F0161 in Hua et al. 2011.		Os04g0113000	LOC_Os04g02280.1						
16969	_	OsFbox180, Os_F0342	_	F-box protein 180			4	LOC_Os04g08460. Os_F0161 in Hua et al. 2011.			LOC_Os04g08460						
16970	_	OsFbox181, Os_F0655, OsFBX117, FBX117	_	F-box protein 181, F-box-type E3 ubiquitin ligase X117			4	LOC_Os04g08510. Os_F0655 in Hua et al. 2011.		Os04g0167600	LOC_Os04g08510.1						
16971	_	OsFbox182, Os_F0223, F-box118, OsFBX118, FBX118	_	F-box protein 182, F-box-type E3 ubiquitin ligase X118			4	LOC_Os04g11450. Os_F0223 in Hua et al. 2011. F-box118 in Kamolsukyeunyong et al. 2019.	 Tolerance and resistance - Insect resistance	Os04g0191800	LOC_Os04g11450.1				GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
16972	_	OsFbox183, Fbox183, Os_F0203, F-box119, OsFBX119, FBX119	_	F-box protein 183, F-box-type E3 ubiquitin ligase X119			4	LOC_Os04g11660. Os_F0203 in Hua et al. 2011. F-box119 in Kamolsukyeunyong et al. 2019.	 Tolerance and resistance - Insect resistance	Os04g0193300	LOC_Os04g11660.2, LOC_Os04g11660.1				GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
16973	_	OsFbox184, Os_F0197, OsFBX120, FBX120	_	F-box protein 184, F-box-type E3 ubiquitin ligase X120			4	LOC_Os04g11790. Os_F0197 in Hua et al. 2011.		Os04g0194000	LOC_Os04g11790.1						
16974	_	OsFbox185, Os_F0197, OsFBX121, FBX121	_	F-box protein 185, F-box-type E3 ubiquitin ligase X121			4	LOC_Os04g11890. Os_F0142 in Hua et al. 2011.		Os04g0195100	LOC_Os04g11890.1						
16975	_	OsFbox186, Os_F0322	_	F-box protein 186			4	LOC_Os04g12990. Os_F0322 in Hua et al. 2011.			LOC_Os04g12990						
16976	_	OsFbox187, Os_F0245, OsFBX123, FBX123	_	F-box protein 187, F-box-type E3 ubiquitin ligase X123			4	LOC_Os04g13010. Os_F0245 in Hua et al. 2011.		Os04g0207000	LOC_Os04g13010.1						
16977	_	OsFbox188, Os_F0182, OsFBX124, FBX124	_	F-box protein 188, F-box-type E3 ubiquitin ligase X124			4	LOC_Os04g13040. Os_F0182 in Hua et al. 2011.		Os04g0207100	LOC_Os04g13040.1						
16978	BRT1	OsFbox189, Os_F0133, OsFBX125, FBX125, OsBRT1	BROADER TILLER ANGLE 1	F-box protein 189, F-box-type E3 ubiquitin ligase X125	F-BOX PROTEIN 189	brt1-2, brt1-3, brt1-5, brt1-7, brt1-c, brt1-e	4	Os_F0133 in Hua et al. 2011. TO:0000783: inflorescence axis size.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0208400	LOC_Os04g13150.1				GO:0009648 - photoperiodism, GO:0010229 - inflorescence development	TO:0000229 - photoperiod sensitivity, TO:0000240 - sterile lemma length, TO:0000567 - tiller angle, TO:0000621 - inflorescence development trait	PO:0025082 - reproductive shoot system , PO:0001083 - inflorescence development stage , PO:0025588 - flower meristem transition stage , PO:0020148 - shoot apical meristem , PO:0009072 - plant ovary , PO:0009049 - inflorescence 
16979	_	OsFbox190, Os_F0204, OsFBD9, FBD9	_	F-box protein 190, F-box-type E3 ubiquitin ligase D9			4	LOC_Os04g13160. Os_F0204 in Hua et al. 2011.		Os04g0208500	LOC_Os04g13160.1						
16980	_	OsFbox191, Os_F0109, OsFBD10, FBD10	_	F-box protein 191, F-box-type E3 ubiquitin ligase D10			4	Os_F0109 in Hua et al. 2011.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0208600	LOC_Os04g13170.1				GO:0051321 - meiotic cell cycle	TO:0000355 - heterosis, TO:0000729 - meiotic cell cycle trait	
16981	_	OsFbox192, Os_F0688, OsFBX126, FBX126	_	F-box protein 192, F-box-type E3 ubiquitin ligase X126			4	LOC_Os04g18790. Os_F0688 in Hua et al. 2011.		Os04g0258900	LOC_Os04g18790.1						
16982	_	OsFbox193, Os_F0515	_	F-box protein 193			4	LOC_Os04g19750. Os_F0515 in Hua et al. 2011.			LOC_Os04g19750						
16983	_	OsFbox194, Os_F0635, OsFBX470, FBX470	_	F-box protein 194, F-box-type E3 ubiquitin ligase X470			4	LOC_Os04g19800. Os_F0635 in Hua et al. 2011.		Os04g0267600	LOC_Os04g19800.1						
16984	_	OsFbox195, Os_F0144, OsFBL12, FBL12	_	F-box protein 195, F-box-type E3 ubiquitin ligase L12			4	LOC_Os04g19810. Os_F0144 in Hua et al. 2011.		Os04g0267775	LOC_Os04g19810.1						
16985	_	OsFbox196, Os_F0324, OsFBL13, FBL13	_	F-box protein 196, F-box-type E3 ubiquitin ligase L13			4	LOC_Os04g19920. Os_F0324 in Hua et al. 2011.		Os04g0268600	LOC_Os04g19920.1						
16986	_	OsFbox197, Os_F0620, OsFBX127, FBX127	_	F-box protein 197, F-box-type E3 ubiquitin ligase X127			4	LOC_Os04g24820. Os_F0620 in Hua et al. 2011.		Os04g0313500	LOC_Os04g24820.1						
16987	_	OsFbox198, Os_F0644, OsFBDUF20, FBDUF20	_	F-box protein 198, F-box-type E3 ubiquitin ligase FBDUF20			4	LOC_Os04g25140. Os_F0644 in Hua et al. 2011.		Os04g0317300	LOC_Os04g25140.1						
16988	_	OsFbox199, Os_F0630, OsFBX128, FBX128	_	F-box protein 199, F-box-type E3 ubiquitin ligase X128			4	LOC_Os04g25840. Os_F0630 in Hua et al. 2011.		Os04g0324600	LOC_Os04g25840.1						
16989	_	OsFbox200, Os_F0645, OsFBDUF21, FBDUF21	_	F-box protein 200, F-box-type E3 ubiquitin ligase FBDUF21			4	LOC_Os04g26240. Os_F0645 in Hua et al. 2011.		Os04g0329500	LOC_Os04g26240.1, LOC_Os04g26240.2						
16990	_	OsFbox201, Os_F0552, OsFBX129, FBX129	_	F-box protein 201, F-box-type E3 ubiquitin ligase X129			4	LOC_Os04g30810. Os_F0552 in Hua et al. 2011.		Os04g0376800	LOC_Os04g30810.1						
16991	_	OsFbox202, Os_F0749	_	F-box protein 202			4	LOC_Os04g30830. Os_F0749 in Hua et al. 2011.			LOC_Os04g30830						
16992	_	OsFbox203, Os_F0600, OsFBK14, FBK14	_	F-box protein 203, F-box-type E3 ubiquitin ligase K14			4	LOC_Os04g31120. Os_F0600 in Hua et al. 2011.		Os04g0380300	LOC_Os04g31120.1, LOC_Os04g31120.2, LOC_Os04g31120.3, LOC_Os04g31120.4, LOC_Os04g31120.5, LOC_Os04g31120.6						
16993	_	OsFbox204, Os_F0139, OsFBX130, FBX130	_	F-box protein 204, F-box-type E3 ubiquitin ligase X130			4	LOC_Os04g31540. Os_F0139 in Hua et al. 2011.		Os04g0384500	LOC_Os04g31540.1						
16994	_	OsFbox205, Os_F0044, OsFBX131, FBX131	_	F-box protein 205, F-box-type E3 ubiquitin ligase X131			4	LOC_Os04g31580. Os_F0044 in Hua et al. 2011.		Os04g0385100	LOC_Os04g31580.1						
16995	_	OsFbox207, Os_F0611, OsFBLD2, FBLD2	_	F-box protein 207, F-box-type E3 ubiquitin ligase FBLD2			4	LOC_Os04g33400. Os_F0611 in Hua et al. 2011.		Os04g0409100	LOC_Os04g33400.1						
16996	_	OsFbox208, Os_F0775, OsFBX132, FBX132	_	F-box protein 208, F-box-type E3 ubiquitin ligase X132			4	LOC_Os04g33820. Os_F0775 in Hua et al. 2011.		Os04g0414500	LOC_Os04g33820.1						
16997	_	OsFbox210, OsFBX134, FBX134	_	F-box protein 210, F-box-type E3 ubiquitin ligase X134			4	LOC_Os04g35930.		Os04g0440200	LOC_Os04g35930.1						
16998	_	OsFbox211, Os_F0331, OsFBX135, FBX135	_	F-box protein 211, F-box-type E3 ubiquitin ligase X135			4	LOC_Os04g35940. Os_F0331 in Hua et al. 2011.		Os04g0440300	LOC_Os04g35940.1						
16999	_	OsFbox212, Os_F0238, OsFBL17, FBL17	_	F-box protein 212, F-box-type E3 ubiquitin ligase L17			4	LOC_Os04g35970. Os_F0238 in Hua et al. 2011.		Os04g0440400	LOC_Os04g35970.1						
17000	_	OsFbox213, Os_F0422, OsFBX136, FBX136	_	F-box protein 213, F-box-type E3 ubiquitin ligase X136			4	LOC_Os04g35990. Os_F0422 in Hua et al. 2011.		Os04g0440700	LOC_Os04g35990.1						
17001	_	OsFbox214, Os_F0430, OsFBX137, FBX137	_	F-box protein 214, F-box-type E3 ubiquitin ligase X137			4	LOC_Os04g36000. Os_F0430 in Hua et al. 2011.		Os04g0440901	LOC_Os04g36000.1						
17002	_	OsFbox215, Os_F0110, OsFBX138, FBX138	_	F-box protein 215, F-box-type E3 ubiquitin ligase X138			4	LOC_Os04g36020. Os_F0110 in Hua et al. 2011.		Os04g0441400	LOC_Os04g36020.1						
17003	_	OsFbox216, Os_F0328, OsFBX139, FBX139	_	F-box protein 216, F-box-type E3 ubiquitin ligase X139			4	LOC_Os04g39070. Os_F0328 in Hua et al. 2011.		Os04g0464900	LOC_Os04g39070.1						
17004	_	OsFbox217, Os_F0121, MOF, OsMOF, OsFBX140, FBX140	_	F-box protein 217, MEIOTIC F-BOX, F-box-type E3 ubiquitin ligase X140		mof	4	LOC_Os04g39080. Os_F0121 in Hua et al. 2011.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0464966	LOC_Os04g39080.1				GO:0007129 - synapsis, GO:0007128 - meiotic prophase I, GO:0000706 - meiotic DNA double-strand break processing, GO:0009555 - pollen development, GO:0045141 - meiotic telomere clustering, GO:0019005 - SCF ubiquitin ligase complex, GO:0007140 - male meiosis	TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
17005	_	OsFbox218, Os_F0597, OsFBDUF22, FBDUF22	_	F-box protein 218, F-box-type E3 ubiquitin ligase FBDUF22			4	LOC_Os04g39660. Os_F0597 in Hua et al. 2011.		Os04g0472600	LOC_Os04g39660.1						
17006	_	OsFbox219, Os_F0485, OsFBX141, FBX141	_	F-box protein 219, F-box-type E3 ubiquitin ligase X141			4	LOC_Os04g40330. Os_F0485 in Hua et al. 2011.		Os04g0479500	LOC_Os04g40330.1, LOC_Os04g40330.2, LOC_Os04g40330.3						
17007	_	OsFbox220, Os_F0518, OsFBX142, FBX142	_	F-box protein 220, F-box-type E3 ubiquitin ligase X142			4	LOC_Os04g40370. Os_F0518 in Hua et al. 2011.		Os04g0479800	LOC_Os04g40370.1, LOC_Os04g40370.2, LOC_Os04g40370.3						
17008	_	OsFbox221, Os_F0036, OsFBX143, FBX143	_	F-box protein 221, F-box-type E3 ubiquitin ligase X143			4	LOC_Os04g40760. Os_F0036 in Hua et al. 2011.		Os04g0483800	LOC_Os04g40760.1						
17009	_	OsFbox222, Os_F0047, OsFBX144, FBX144	_	F-box protein 222, F-box-type E3 ubiquitin ligase X144			4	Os_F0047 in Hua et al. 2011.		Os04g0483900/Os04g0483950	LOC_Os04g40770.1						
17010	_	OsFbox223, Os_F0055, OsFBX145, FBX145	_	F-box protein 223, F-box-type E3 ubiquitin ligase X145			4	Os_F0055 in Hua et al. 2011.		Os04g0484000/Os04g0484066	LOC_Os04g40780.1						
17011	_	OsFbox224, Os_F0093	_	F-box protein 224			4	LOC_Os04g40800. Os_F0093 in Hua et al. 2011.			LOC_Os04g40800						
17012	_	OsFbox225, Os_F0540, OsFBX146, FBX146	_	F-box protein 225, F-box-type E3 ubiquitin ligase X146			4	LOC_Os04g40910. Os_F0540 in Hua et al. 2011.		Os04g0485800	LOC_Os04g40910.1, LOC_Os04g40910.2						
17013	_	OsFbox226, Os_F0022, OsFBX147, FBX147	_	F-box protein 226, F-box-type E3 ubiquitin ligase X147			4	LOC_Os04g40960. Os_F0022 in Hua et al. 2011.		Os04g0486700	LOC_Os04g40960.1						
17014	_	OsFbox227, Os_F0286, OsFBL19, FBL19	_	F-box protein 227, F-box-type E3 ubiquitin ligase L19			4	LOC_Os04g42670. Os_F0286 in Hua et al. 2011.		Os04g0505700	LOC_Os04g42670.1						
17015	_	OsFbox228, Os_F0553, OsFBX148, FBX148	_	F-box protein 228, F-box-type E3 ubiquitin ligase X148			4	LOC_Os04g48270. Os_F0553 in Hua et al. 2011.		Os04g0571300	LOC_Os04g48270.1, LOC_Os04g48270.2, LOC_Os04g48270.3, LOC_Os04g48270.4						
17016	_	OsFbox229, Os_F0493, OsFBX149, FBX149	_	F-box protein 229, F-box-type E3 ubiquitin ligase X149			4	LOC_Os04g49360. Os_F0493 in Hua et al. 2011.		Os04g0583000	LOC_Os04g49360.1						
17017	_	OsFbox230, Os_F0308, OsFBX150, FBX150	_	F-box protein 230, F-box-type E3 ubiquitin ligase X150			4	Os_F0308 in Hua et al. 2011.		Os04g0589300	LOC_Os04g49950.1						
17018	_	OsFbox231, Os_F0565, OsFBX151, FBX151	_	F-box protein 231, F-box-type E3 ubiquitin ligase X151			4	LOC_Os04g50200. Os_F0565 in Hua et al. 2011.		Os04g0591900	LOC_Os04g50200.1						
17019	_	OsFbox232, Os_F0576, Ctb1, OsCtb1, OsFBK15, FBK15	_	F-box protein 232, F-box-type E3 ubiquitin ligase K15			4	Os_F0576 in Hua et al. 2011.		Os04g0619300	LOC_Os04g52830.2, LOC_Os04g52830.1				GO:0005634 - nucleus		
17020	_	OsFbox234, Os_F0170, OsFBL20, FBL20	_	F-box protein 234, F-box-type E3 ubiquitin ligase L20			4	LOC_Os04g53510. Os_F0170 in Hua et al. 2011.		Os04g0626600	LOC_Os04g53510.1						
17021	_	OsFbox235, Os_F0248, OsFBX152, FBX152	_	F-box protein 235, F-box-type E3 ubiquitin ligase X152			4	LOC_Os04g56250. Os_F0248 in Hua et al. 2011.		Os04g0657600	LOC_Os04g56250.1						
17022	_	OsFbox236, Os_F0264, OsFBX493, FBX493	_	F-box protein 236, F-box-type E3 ubiquitin ligase X493			4	Q7XR80. LOC_Os04g57210. Os_F0264 in Hua et al. 2011.		Os04g0667700	LOC_Os04g57210.1, LOC_Os04g57210.2, LOC_Os04g57210.3				GO:0005524 - ATP binding, GO:0005730 - nucleolus, GO:0005737 - cytoplasm		
17023	_	OsFbox237, Os_F0241, OsFBX153, FBX153	_	F-box protein 237, F-box-type E3 ubiquitin ligase X153			4	 LOC_Os04g57290. Os_F0241 in Hua et al. 2011.		Os04g0668600	LOC_Os04g57290.1						
17024	_	OsFbox238, Os_F0385, OsFBX154, FBX154	_	F-box protein 238, F-box-type E3 ubiquitin ligase X154			4	 LOC_Os04g57920. Os_F0385 in Hua et al. 2011.		Os04g0675800	LOC_Os04g57920.1				GO:0010020 - chloroplast fission		
17025	_	OsFbox239, Os_F0304, OsFBX472, FBX472	_	F-box protein 239, F-box-type E3 ubiquitin ligase X472			4	LOC_Os04g59010. Os_F0304 in Hua et al. 2011.		Os04g0686700	LOC_Os04g59010.1						
17026	_	OsFbox241, Os_F0593, OsFBX155, FBX155	_	F-box protein 241, F-box-type E3 ubiquitin ligase X155			5	LOC_Os05g01620. Os_F0593 in Hua et al. 2011.		Os05g0106800	LOC_Os05g01620.1						
17027	_	OsFbox242, Os_F0706, OsFBX156, FBX156	_	F-box protein 242, F-box-type E3 ubiquitin ligase X156			5	LOC_Os05g01630. Os_F0706 in Hua et al. 2011.		Os05g0106900	LOC_Os05g01630.1, LOC_Os05g01630.2, LOC_Os05g01630.3						
17028	_	OsFbox243, Os_F0545, OsFBX473, FBX473	_	F-box protein 243, F-box-type E3 ubiquitin ligase X473			5	LOC_Os05g02550. Os_F0545 in Hua et al. 2011.		Os05g0116300	LOC_Os05g02550.1						
17029	_	OsFbox244, Os_F0497, OsFBDUF23, FBDUF23	_	F-box protein 244, F-box-type E3 ubiquitin ligase FBDUF23			5	LOC_Os05g03210. Os_F0497 in Hua et al. 2011.		Os05g0123400	LOC_Os05g03210.1, LOC_Os05g03210.2						
17030	_	OsFbox245, Os_F0037, OsFBX157, FBX157	_	F-box protein 245, F-box-type E3 ubiquitin ligase X157			5	LOC_Os05g04750. Os_F0037 in Hua et al. 2011.		Os05g0139200	LOC_Os05g04750.1						
17031	_	OsFbox246, Os_F0004, OsFBX158, FBX158	_	F-box protein 246, F-box-type E3 ubiquitin ligase X158			5	LOC_Os05g04770. Os_F0004 in Hua et al. 2011.		Os05g0139300	LOC_Os05g04770.1						
17032	_	OsFbox247, Os_F0660, OsFBX159, FBX159	_	F-box protein 247, F-box-type E3 ubiquitin ligase X159			5	LOC_Os05g05500. Os_F0660 in Hua et al. 2011.		Os05g0147700	LOC_Os05g05500.1						
17033	_	OsFbox249, Os_F0030, OsFBX160, FBX160	_	F-box protein 249, F-box-type E3 ubiquitin ligase X160			5	LOC_Os05g07950. Os_F0030 in Hua et al. 2011.		Os05g0172000	LOC_Os05g07950.1						
17034	_	OsFbox250, Os_F0011, OsFBX161, FBX161	_	F-box protein 250, F-box-type E3 ubiquitin ligase X161			5	LOC_Os05g08010. Os_F0011 in Hua et al. 2011.		Os05g0172500	LOC_Os05g08010.1						
17035	_	OsFbox251, Os_F0085, OsFBX162, FBX162	_	F-box protein 251, F-box-type E3 ubiquitin ligase X162			5	LOC_Os05g08350. Os_F0085 in Hua et al. 2011.		Os05g0175800	LOC_Os05g08350.1						
17036	_	OsFbox252, Os_F0066, OsFBX163, FBX163	_	F-box protein 252, F-box-type E3 ubiquitin ligase X163			5	LOC_Os05g08440. Os_F0066 in Hua et al. 2011.		Os05g0177000	LOC_Os05g08440.1						
17037	_	OsFbox253, Os_F0052, OsFBX164, FBX164	_	F-box protein 253, F-box-type E3 ubiquitin ligase X164			5	LOC_Os05g08460. Os_F0052 in Hua et al. 2011.		Os05g0177400	LOC_Os05g08460.1						
17038	_	OsFbox254, Os_F0290, OsFBDUF24, FBDUF24	_	F-box protein 254, F-box-type E3 ubiquitin ligase FBDUF24			5	LOC_Os05g18660. Os_F0290 in Hua et al. 2011.		Os05g0269100	LOC_Os05g18660.1, LOC_Os05g18660.2						
17039	_	OsFbox255, Os_F0067, OsFBX165, FBX165	_	F-box protein 255, F-box-type E3 ubiquitin ligase X165			5	LOC_Os05g25580. Os_F0067 in Hua et al. 2011.		Os05g0320100	LOC_Os05g25580.1						
17040	_	OsFbox256, Os_F0111	_	F-box protein 256			5	LOC_Os05g27550. Os_F0111 in Hua et al. 2011.			LOC_Os05g27550						
17041	_	OsFbox257, Os_F0400, OsFBX167, FBX167	_	F-box protein 257, F-box-type E3 ubiquitin ligase X167			5	LOC_Os05g30920. Os_F0400 in Hua et al. 2011.		Os05g0372800	LOC_Os05g30920.1, LOC_Os05g30920.2, LOC_Os05g30920.3						
17042	_	OsFbox258, Os_F0658, OsFBL22, FBL22	_	F-box protein 258, F-box-type E3 ubiquitin ligase L22			5	LOC_Os05g35110. Os_F0658 in Hua et al. 2011. GO:1901332: negative regulation of lateral root development.		Os05g0425700	LOC_Os05g35110.1				GO:0010311 - lateral root formation, GO:0051781 - positive regulation of cell division, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0071365 - cellular response to auxin stimulus, GO:0010286 - heat acclimation, GO:0004842 - ubiquitin-protein ligase activity, GO:0019005 - SCF ubiquitin ligase complex		
17043	_	OsFbox261, Os_F0604, OsFBL24, FBL24	_	F-box protein 261, F-box-type E3 ubiquitin ligase L24			5	LOC_Os05g39300. Os_F0604 in Hua et al. 2011.		Os05g0469300	LOC_Os05g39300.1						
17044	_	OsFbox262, Os_F0703	_	F-box protein 262			5	LOC_Os05g40500. Os_F0703 in Hua et al. 2011.			LOC_Os05g40500						
17045	_	OsFbox263, Os_F0721	_	F-box protein 263			5	LOC_Os05g40520. Os_F0721 in Hua et al. 2011.			LOC_Os05g40520						
17046	_	OsFbox264, Os_F0554	_	F-box protein 264			5	LOC_Os05g40610. Os_F0554 in Hua et al. 2011.			LOC_Os05g40610						
17047	_	OsFbox265, Os_F0584, OsFBX168, FBX168	_	F-box protein 265, F-box-type E3 ubiquitin ligase X168			5	LOC_Os05g41130. Os_F0584 in Hua et al. 2011.		Os05g0490300	LOC_Os05g41130.1						
17048	_	OsFbox266, Os_F0434, OsFBX169, FBX169	_	F-box protein 266, F-box-type E3 ubiquitin ligase X169			5	LOC_Os05g43490. Os_F0434 in Hua et al. 2011.		Os05g0510400	LOC_Os05g43490.1, LOC_Os05g43490.2						
17049	_	OsFbox268, Os_F0080, OsFBX170, FBX170	_	F-box protein 268, F-box-type E3 ubiquitin ligase X170			5	LOC_Os05g45040. Os_F0080 in Hua et al. 2011.		Os05g0526300	LOC_Os05g45040.1						
17050	_	OsFbox269, Os_F0444, OsFBL25, FBL25	_	F-box protein 269, F-box-type E3 ubiquitin ligase L25			5	LOC_Os05g45870. Os_F0444 in Hua et al. 2011.		Os05g0535200	LOC_Os05g45870.1						
17051	_	OsFbox270, Os_F0454, OsFBX171, FBX171	_	F-box protein 270, F-box-type E3 ubiquitin ligase X171			5	LOC_Os05g45990. Os_F0454 in Hua et al. 2011.		Os05g0536800	LOC_Os05g45990.1						
17052	_	OsFbox271, Os_F0666	_	F-box protein 271			5	LOC_Os05g46060. Os_F0666 in Hua et al. 2011.			LOC_Os05g46060						
17053	_	OsFbox272, Os_F0626	_	F-box protein 272			5	LOC_Os05g46150. Os_F0626 in Hua et al. 2011.			LOC_Os05g46150						
17054	_	OsFbox273, Os_F0573	_	F-box protein 273			5	LOC_Os05g46160. Os_F0573 in Hua et al. 2011.			LOC_Os05g46160						
17055	_	OsFbox274, Os_F0450, OsFBX172, FBX172	_	F-box protein 274, F-box-type E3 ubiquitin ligase X172			5	LOC_Os05g46300. Os_F0450 in Hua et al. 2011.		Os05g0540400	LOC_Os05g46300.1						
17056	_	OsFbox275, Os_F0483, OsFBX173, FBX173	_	F-box protein 275, F-box-type E3 ubiquitin ligase X173			5	LOC_Os05g46320. Os_F0483 in Hua et al. 2011.		Os05g0540600	LOC_Os05g46320.1						
17057	_	OsFbox276, Os_F0412, OsFBX174, FBX174	_	F-box protein 276, F-box-type E3 ubiquitin ligase X174			5	LOC_Os05g46380. Os_F0412 in Hua et al. 2011.		Os05g0541500	LOC_Os05g46380.1						
17058	_	OsFbox277, Os_F0150, OsFBX175, FBX175	_	F-box protein 277, F-box-type E3 ubiquitin ligase X175			5	LOC_Os05g46390. Os_F0150 in Hua et al. 2011.		Os05g0541600	LOC_Os05g46390.1						
17059	_	OsFbox279, Os_F0100, OsFBX176, FBX176	_	F-box protein 279, F-box-type E3 ubiquitin ligase X176			5	LOC_Os05g49400. Os_F0100 in Hua et al. 2011.		Os05g0569100	LOC_Os05g49400.1						
17060	_	OsFbox280, Os_F0260, OsFBX177, FBX177	_	F-box protein 280, F-box-type E3 ubiquitin ligase X177			5	LOC_Os05g49450. Os_F0260 in Hua et al. 2011.		Os05g0569600	LOC_Os05g49450.1						
17061	_	OsFbox281, Os_F0379, OsFBX475, FBX475	_	F-box protein 281, F-box-type E3 ubiquitin ligase X475			5	LOC_Os05g49530. Os_F0379 in Hua et al. 2011.		Os05g0570500	LOC_Os05g49530.1						
17062	_	OsFbox282, Os_F0643, OsFBX178, FBX178	_	F-box protein 282, F-box-type E3 ubiquitin ligase X178			5	LOC_Os05g49680. Os_F0643 in Hua et al. 2011.		Os05g0571700	LOC_Os05g49680.1						
17063	_	OsFbox283, Os_F0368, OsFBL26, FBL26	_	F-box protein 283, F-box-type E3 ubiquitin ligase L26			5	LOC_Os05g49980. Os_F0368 in Hua et al. 2011.		Os05g0575400	LOC_Os05g49980.1, LOC_Os05g49980.2						
17064	_	OsFbox284, Os_F0301, OsFBX179, FBX179	_	F-box protein 284, F-box-type E3 ubiquitin ligase X179			5	LOC_Os05g51100. Os_F0301 in Hua et al. 2011.		Os05g0588600	LOC_Os05g51100.1						
17065	_	OsFbox285, Os_F0166, OsFBX180, FBX180	_	F-box protein 285, F-box-type E3 ubiquitin ligase X180			6	LOC_Os06g02054. Os_F0166 in Hua et al. 2011.		Os06g0110400	LOC_Os06g02054.1						
17066	_	OsFbox286, Os_F0619, OsFBX181, FBX181	_	F-box protein 286, F-box-type E3 ubiquitin ligase X181			6	LOC_Os06g02100. Os_F0619 in Hua et al. 2011.		Os06g0111100	LOC_Os06g02100.1						
17067	_	OsFbox287, Os_F0750, OsFBX182, FBX182	_	F-box protein 287, F-box-type E3 ubiquitin ligase X182			6	LOC_Os06g02110. Os_F0750 in Hua et al. 2011.		Os06g0111200	LOC_Os06g02110.1						
17068	_	OsFbox288, Os_F0622, OsFBX183, FBX183	_	F-box protein 288, F-box-type E3 ubiquitin ligase X183			6	LOC_Os06g02340. Os_F0622 in Hua et al. 2011.		Os06g0113600	LOC_Os06g02340.1						
17069	_	OsFbox289, Os_F0510, OsFBO18, FBO18	_	F-box protein 289, F-box-type E3 ubiquitin ligase O18			6	LOC_Os06g02400. Os_F0510 in Hua et al. 2011.		Os06g0114300	LOC_Os06g02400.1						
17070	_	OsFbox290, Os_F0343, OsFBX184, FBX184	_	F-box protein 290, F-box-type E3 ubiquitin ligase X184			6	LOC_Os06g04690. Os_F0343 in Hua et al. 2011.		Os06g0138700	LOC_Os06g04690.1						
17071	FBOX291	OsFbox291, Os_F0516, OsFBX185, FBX185	F-BOX PROTEIN 291	F-box protein 291, F-box-type E3 ubiquitin ligase X185	F-BOX PROTEIN 291	ogorf7-1, ogorf7-2	6	Os_F0516 in Hua et al. 2011. KY486274 (OsORF7 in Oryza sativa S1 locus, F-box domain protein), KY486273 (OgORF7 in Oryza glaberrima S1 locus, F-box domain protein). The mF1 plants with ogorf7-1 or ogorf7-2 showed the semi-sterile phenotype of pollen and spikelets, and the distorted genotypic segregation (Xie et al. 2017).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0142100	LOC_Os06g04980.1					TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility, TO:0000437 - male sterility, TO:0000358 - female sterility	
17072	_	OsFbox292, Os_F0618, OsFBDUF30, FBDUF30	_	F-box protein 292, F-box-type E3 ubiquitin ligase FBDUF30			6	LOC_Os06g05580. Os_F0618 in Hua et al. 2011.		Os06g0148600	LOC_Os06g05580.1, LOC_Os06g05580.2						
17073	_	OsFbox293, Os_F0585, OsFBX186, FBX186	_	F-box protein 293, F-box-type E3 ubiquitin ligase X186			6	LOC_Os06g05590. Os_F0585 in Hua et al. 2011.		Os06g0148700	LOC_Os06g05590.1						
17074	_	OsFbox294, Os_F0333	_	F-box protein 294			6	LOC_Os06g05600. Os_F0333 in Hua et al. 2011.			LOC_Os06g05600						
17075	_	OsFbox295, Os_F0299, OsFBDUF32, FBDUF32	_	F-box protein 295, F-box-type E3 ubiquitin ligase FBDUF32			6	LOC_Os06g05610. Os_F0299 in Hua et al. 2011.		Os06g0148900	LOC_Os06g05610.1						
17076	_	OsFbox296, Os_F0612	_	F-box protein 296			6	LOC_Os06g05620. Os_F0612 in Hua et al. 2011.			LOC_Os06g05620						
17077	_	OsFbox297, Os_F0442, OsFBX187, FBX187	_	F-box protein 297, F-box-type E3 ubiquitin ligase X187			6	LOC_Os06g06600. Os_F0442 in Hua et al. 2011.		Os06g0161300	LOC_Os06g06600.1, LOC_Os06g06600.2						
17078	_	OsFbox298, Os_F0486, OsFBL28, FBL28	_	F-box protein 298, F-box-type E3 ubiquitin ligase L28			6	LOC_Os06g07000. Os_F0486 in Hua et al. 2011.		Os06g0166000	LOC_Os06g07000.1, LOC_Os06g07000.2, LOC_Os06g07000.3						
17079	_	OsFbox299, Os_F0015, OsFBX188, FBX188	_	F-box protein 299, F-box-type E3 ubiquitin ligase X188			6	LOC_Os06g07380. Os_F0015 in Hua et al. 2011.		Os06g0170700	LOC_Os06g07380.1						
17080	_	OsFbox300, Os_F0003	_	F-box protein 300			6	LOC_Os06g07430. Os_F0003 in Hua et al. 2011.			LOC_Os06g07430						
17081	_	OsFbox301, Os_F0013, OsFBX190, FBX190	_	F-box protein 301, F-box-type E3 ubiquitin ligase X190			6	LOC_Os06g07460. Os_F0013 in Hua et al. 2011.		Os06g0171400	LOC_Os06g07460.1						
17082	_	OsFbox302, Os_F0143, OsFBL29, FBL29, OsFBX191, FBX191	_	F-box protein 302, F-box-type E3 ubiquitin ligase L29, F-box-type E3 ubiquitin ligase X191			6	Os_F0143 in Hua et al. 2011.		Os06g0204500/Os06g0204600	LOC_Os06g10290.1						
17083	_	OsFbox303, Os_F0405	_	F-box protein 303			6	LOC_Os06g10300. Os_F0405 in Hua et al. 2011.		Os06g0204600	LOC_Os06g10290.1, LOC_Os06g10300.1						
17084	_	OsFbox305, Os_F0041, OsFBX193, FBX193	_	F-box protein 305, F-box-type E3 ubiquitin ligase X193			6	LOC_Os06g13850. Os_F0041 in Hua et al. 2011.		Os06g0248300	LOC_Os06g13850.1						
17085	_	OsFbox306, Os_F0305, OsFBX194, FBX194	_	F-box protein 306, F-box-type E3 ubiquitin ligase X194			6	LOC_Os06g13960. Os_F0305 in Hua et al. 2011.		Os06g0249850	LOC_Os06g13960.1						
17086	_	OsFbox307, Os_F0034, OsFBX195, FBX195	_	F-box protein 307, F-box-type E3 ubiquitin ligase X195			6	LOC_Os06g13990. Os_F0034 in Hua et al. 2011.		Os06g0250000	LOC_Os06g13990.1						
17087	_	OsFbox308, Os_F0081, OsFBX196, FBX196	_	F-box protein 308, F-box-type E3 ubiquitin ligase X196			6	LOC_Os06g19670. Os_F0081 in Hua et al. 2011.		Os06g0300900	LOC_Os06g19670.1						
17088	_	OsFbox309, Os_F0312, OsFBD11, FBD11	_	F-box protein 309, F-box-type E3 ubiquitin ligase D11			6	LOC_Os06g29700. Os_F0312 in Hua et al. 2011.		Os06g0492800	LOC_Os06g29700.1						
17089	_	OsFbox310, Os_F0057, OsFBD12, FBD12	_	F-box protein 310, F-box-type E3 ubiquitin ligase D12			6	LOC_Os06g29710. Os_F0057 in Hua et al. 2011.		Os06g0492900	LOC_Os06g29710.1						
17090	_	OsFbox311, Os_F0115, OsFBX197, FBX197	_	F-box protein 311, F-box-type E3 ubiquitin ligase X197			6	LOC_Os06g29740. Os_F0115 in Hua et al. 2011.		Os06g0493266	LOC_Os06g29740.1						
17091	_	OsFbox312, Os_F0546, OsFBX476, FBX476	_	F-box protein 312, F-box-type E3 ubiquitin ligase X476			6	LOC_Os06g35080. Os_F0546 in Hua et al. 2011.		Os06g0542600	LOC_Os06g35080.1						
17092	_	OsFbox313, Os_F0104, OsFBX198, FBX198	_	F-box protein 313, F-box-type E3 ubiquitin ligase X198			6	LOC_Os06g36220. Os_F0104 in Hua et al. 2011.		Os06g0556300	LOC_Os06g36220.1						
17093	_	OsFbox315, Os_F0369	_	F-box protein 315			6	LOC_Os06g40220. Os_F0369 in Hua et al. 2011.			LOC_Os06g40220						
17094	FBOX316	OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1, OsFBL30, FBL30	F-BOX PROTEIN 316	F-box protein 316, EIN3-BINDING F-BOX PROTEIN 1, F-box-type E3 ubiquitin ligase L30	F-BOX PROTEIN 316	Osebf1	6	Os_F0624 in Hua et al. 2011. GO:1900367: positive regulation of defense response to insect.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Tolerance and resistance - Insect resistance	Os06g0605900	LOC_Os06g40360.2, LOC_Os06g40360.1				GO:0031398 - positive regulation of protein ubiquitination, GO:0019005 - SCF ubiquitin ligase complex, GO:0009723 - response to ethylene stimulus, GO:0001666 - response to hypoxia, GO:0009873 - ethylene mediated signaling pathway, GO:0002213 - defense response to insect, GO:0005634 - nucleus, GO:0045732 - positive regulation of protein catabolic process	TO:0000015 - oxygen sensitivity, TO:0000516 - relative root length, TO:0000424 - brown planthopper resistance, TO:0000173 - ethylene sensitivity, TO:0000227 - root length	PO:0020104 - leaf sheath 
17095	_	OsFbox317, Os_F0038	_	F-box protein 317			6	LOC_Os06g41520. Os_F0038 in Hua et al. 2011.			LOC_Os06g41520						
17096	_	OsFbox318, Os_F0416, OsFBX201, FBX201	_	F-box protein 318, F-box-type E3 ubiquitin ligase X201			6	LOC_Os06g43740. Os_F0416 in Hua et al. 2011.		Os06g0645100	LOC_Os06g43740.1						
17097	_	OsFbox319, Os_F0429, OsFBK17, FBK17	_	F-box protein 319, F-box-type E3 ubiquitin ligase K17			6	LOC_Os06g44500. Os_F0429 in Hua et al. 2011.		Os06g0655500	LOC_Os06g44500.1						
17098	_	OsFbox320, Os_F0613, OsFBDUF34, FBDUF34	_	F-box protein 320, F-box-type E3 ubiquitin ligase FBDUF34			6	LOC_Os06g44920. Os_F0613 in Hua et al. 2011.		Os06g0659700	LOC_Os06g44920.1						
17099	_	OsFbox322, Os_F0520, OsFBX203, FBX203	_	F-box protein 322, F-box-type E3 ubiquitin ligase X203			6	LOC_Os06g47100. Os_F0520 in Hua et al. 2011.		Os06g0684900	LOC_Os06g47100.1						
17100	_	OsFbox323, Os_F0105, OsFBX204, FBX204	_	F-box protein 323, F-box-type E3 ubiquitin ligase X204			6	LOC_Os06g47400. Os_F0105 in Hua et al. 2011.		Os06g0688400	LOC_Os06g47400.1						
17101	_	OsFbox324, Os_F0220, OsFBX205, FBX205	_	F-box protein 324, F-box-type E3 ubiquitin ligase X205			6	LOC_Os06g47680. Os_F0220 in Hua et al. 2011.		Os06g0691900	LOC_Os06g47680.1						
17102	_	OsFbox326, Os_F0327, OsFBDUF35, FBDUF35	_	F-box protein 326, F-box-type E3 ubiquitin ligase FBDUF35			6	LOC_Os06g49340. Os_F0327 in Hua et al. 2011.		Os06g0707300	LOC_Os06g49340.1						
17103	_	OsFbox327, Os_F0126, OsFBX206, FBX206	_	F-box protein 327, F-box-type E3 ubiquitin ligase X206			6	LOC_Os06g49530. Os_F0126 in Hua et al. 2011.		Os06g0709100	LOC_Os06g49530.1						
17104	_	OsFbox328, Os_F0254, OsFBX207, FBX207	_	F-box protein 328, F-box-type E3 ubiquitin ligase X207			6	LOC_Os06g49930. Os_F0254 in Hua et al. 2011.		Os06g0713400	LOC_Os06g49930.1, LOC_Os06g49930.2, LOC_Os06g49930.3						
17105	_	OsFbox329, Os_F0529, OsFBX208, FBX208	_	F-box protein 329, F-box-type E3 ubiquitin ligase X208			7	LOC_Os07g02290. Os_F0529 in Hua et al. 2011.		Os07g0113600	LOC_Os07g02290.1						
17106	_	OsFbox330, Os_F0521, OsFBD13, FBD13	_	F-box protein 330, F-box-type E3 ubiquitin ligase D13			7	LOC_Os07g02760. Os_F0521 in Hua et al. 2011.		Os07g0118800	LOC_Os07g02760.1, LOC_Os07g02760.2, LOC_Os07g02760.3						
17107	_	OsFbox331, Os_F0273, OsFBL32, FBL32	_	F-box protein 331, F-box-type E3 ubiquitin ligase L32			7	LOC_Os07g02770. Os_F0273 in Hua et al. 2011.		Os07g0118900	LOC_Os07g02770.1						
17108	_	OsFbox332, Os_F0267, OsFBX209, FBX209	_	F-box protein 332, F-box-type E3 ubiquitin ligase X209			7	LOC_Os07g02890. Os_F0267 in Hua et al. 2011.		Os07g0120200	LOC_Os07g02890.1						
17109	_	OsFbox333, Os_F0159, OsFBL33, FBL33	_	F-box protein 333, F-box-type E3 ubiquitin ligase L33			7	LOC_Os07g02910. Os_F0159 in Hua et al. 2011.		Os07g0120400	LOC_Os07g02910.1						
17110	_	OsFbox334, Os_F0361	_	F-box protein 334			7	LOC_Os07g02930. Os_F0361 in Hua et al. 2011.			LOC_Os07g02930						
17111	_	OsFbox335, Os_F0487, OsFBX211, FBX211	_	F-box protein 335, F-box-type E3 ubiquitin ligase X211			7	LOC_Os07g03090. Os_F0487 in Hua et al. 2011.		Os07g0122800	LOC_Os07g03090.1						
17112	_	OsFbox336, Os_F0293, OsFBX212, FBX212	_	F-box protein 336, F-box-type E3 ubiquitin ligase X212			7	LOC_Os07g03100. Os_F0293 in Hua et al. 2011.		Os07g0122900	LOC_Os07g03100.1, LOC_Os07g03100.2, LOC_Os07g03100.3						
17113	_	OsFbox337, Os_F0302, OsFBX213, FBX213	_	F-box protein 337, F-box-type E3 ubiquitin ligase X213			7	LOC_Os07g03100. Os_F0293 in Hua et al. 2011.		Os07g0123000	LOC_Os07g03110.1						
17114	_	OsFbox338, Os_F0537, OsFBX214, FBX214	_	F-box protein 338, F-box-type E3 ubiquitin ligase X214			7	LOC_Os07g04750. Os_F0537 in Hua et al. 2011.		Os07g0140500	LOC_Os07g04750.1						
17115	_	OsFbox339, Os_F0636, OsFBX215, FBX215	_	F-box protein 339, F-box-type E3 ubiquitin ligase X215			7	LOC_Os07g04790. Os_F0636 in Hua et al. 2011.		Os07g0140900	LOC_Os07g04790.1						
17116	_	OsFbox340, Os_F0124, OsFBK18, FBK18	_	F-box protein 340, F-box-type E3 ubiquitin ligase K18			7	LOC_Os07g05880. Os_F0124 in Hua et al. 2011.		Os07g0153400	LOC_Os07g05880.1, LOC_Os07g05880.2						
17117	_	OsFbox341, Fbox341, Os_F0215, OsFBL34, FBL34	_	F-box protein 341, F-box-type E3 ubiquitin ligase L34			7	LOC_Os07g06500. Os_F0215 in Hua et al. 2011.		Os07g0158900	LOC_Os07g06500.1						
17118	_	OsFbox342, Os_F0418, OsFBL35, FBL35	_	F-box protein 342, F-box-type E3 ubiquitin ligase L35			7	LOC_Os07g06670. Os_F0418 in Hua et al. 2011.		Os07g0160500	LOC_Os07g06670.1						
17119	_	OsFbox343, Os_F0141, OsFBX216, FBX216	_	F-box protein 343, F-box-type E3 ubiquitin ligase X216			7	LOC_Os07g06730. Os_F0141 in Hua et al. 2011.		Os07g0161500	LOC_Os07g06730.1						
17120	_	OsFbox344, Os_F0183, OsFBLD3, FBLD3	_	F-box protein 344, F-box-type E3 ubiquitin ligase FBLD3			7	LOC_Os07g06900. Os_F0183 in Hua et al. 2011.		Os07g0163200	LOC_Os07g06900.1						
17121	_	OsFbox345, Os_F0495, OsFBX217, FBX217	_	F-box protein 345, F-box-type E3 ubiquitin ligase X217			7	LOC_Os07g07520. Os_F0495 in Hua et al. 2011.		Os07g0170800	LOC_Os07g07520.1						
17122	_	OsFbox346, Os_F0078	_	F-box protein 346			7	LOC_Os07g08570. Os_F0078 in Hua et al. 2011.			LOC_Os07g08570						
17123	_	OsFbox347, Os_F0072, OsFBX220, FBX220	_	F-box protein 347, F-box-type E3 ubiquitin ligase X220			7	LOC_Os07g09710. Os_F0072 in Hua et al. 2011.		Os07g0195300	LOC_Os07g09710.1						
17124	_	OsFbox348, Os_F0035, OsFBX221, FBX221	_	F-box protein 348, F-box-type E3 ubiquitin ligase X221			7	LOC_Os07g09814. Os_F0035 in Hua et al. 2011.		Os07g0196300	LOC_Os07g09814.1, LOC_Os07g09814.2, LOC_Os07g09814.3						
17125	FBOX349	OsFbox349, Os_F0252, OsFBA2, FBA2, OsFBA2, FBA2	F-BOX PROTEIN 349	F-box protein 349, F-box-type E3 ubiquitin ligase A2	F-BOX PROTEIN 349		7	Os_F0252 in Hua et al. 2011. OsFBA2 in Rashid  et al. 2022.  a candidate gene to contribute to lodging resistance. 		Os07g0196900	LOC_Os07g09870.1						
17126	_	OsFbox350, Os_F0212, OsFBX222, FBX222	_	F-box protein 350, F-box-type E3 ubiquitin ligase X222			7	LOC_Os07g09950. Os_F0212 in Hua et al. 2011.		Os07g0198000	LOC_Os07g09950.1						
17127	_	OsFbox351, Os_F0298, OsFBX223, FBX223	_	F-box protein 351, F-box-type E3 ubiquitin ligase X223			7	LOC_Os07g10710. Os_F0298 in Hua et al. 2011.		Os07g0207900	LOC_Os07g10710.1						
17128	_	OsFbox352, Os_F0525, OsFBX224, FBX224	_	F-box protein 352, F-box-type E3 ubiquitin ligase X224			7	LOC_Os07g12560. Os_F0525 in Hua et al. 2011.		Os07g0228400	LOC_Os07g12560.1, LOC_Os07g12560.2						
17129	_	OsFbox353, Os_F0501, OsFBX225, FBX225	_	F-box protein 353, F-box-type E3 ubiquitin ligase X225			7	LOC_Os07g12590. Os_F0501 in Hua et al. 2011.		Os07g0228900	LOC_Os07g12590.1, LOC_Os07g12590.2						
17130	_	OsFbox354, Os_F0275, OsFBX226, FBX226	_	F-box protein 354, F-box-type E3 ubiquitin ligase X226			7	LOC_Os07g12600. Os_F0275 in Hua et al. 2011.		Os07g0229100	LOC_Os07g12600.1						
17131	_	OsFbox355, Os_F0349, OsFBX227, FBX227	_	F-box protein 355, F-box-type E3 ubiquitin ligase X227			7	LOC_Os07g12610. Os_F0349 in Hua et al. 2011.		Os07g0229200	LOC_Os07g12610.1						
17132	_	OsFbox356, Os_F0118, OsFBX229, FBX229	_	F-box protein 356, F-box-type E3 ubiquitin ligase X229			7	LOC_Os07g13870. Os_F0118 in Hua et al. 2011.		Os07g0242400	LOC_Os07g13870.1						
17133	_	OsFbox357, Os_F0033, OsFBX230, FBX230	_	F-box protein 357, F-box-type E3 ubiquitin ligase X230			7	LOC_Os07g13890. Os_F0033 in Hua et al. 2011.		Os07g0242600	LOC_Os07g13890.1						
17134	_	OsFbox358, Os_F0098, OsFBLD4, FBLD4	_	F-box protein 358, F-box-type E3 ubiquitin ligase FBLD4			7	LOC_Os07g13900. Os_F0098 in Hua et al. 2011.		Os07g0242700	LOC_Os07g13900.1						
17135	_	OsFbox359, Os_F0431, OsFBX231, FBX231	_	F-box protein 359, F-box-type E3 ubiquitin ligase X231			7	LOC_Os07g13930. Os_F0431 in Hua et al. 2011.		Os07g0242900	LOC_Os07g13930.1						
17136	_	OsFbox360, Os_F0235, OsFBX232, FBX232	_	F-box protein 360, F-box-type E3 ubiquitin ligase X232			7	LOC_Os07g16420. Os_F0235 in Hua et al. 2011.		Os07g0268000	LOC_Os07g16420.1						
17137	_	OsFbox361, Os_F0171, OsFBX233, FBX233	_	F-box protein 361, F-box-type E3 ubiquitin ligase X233			7	LOC_Os07g16800. Os_F0171 in Hua et al. 2011.		Os07g0269800	LOC_Os07g16800.1				GO:0003824 - catalytic activity		
17138	_	OsFbox362, Os_F0439, OsFBL36, FBL36	_	F-box protein 362, F-box-type E3 ubiquitin ligase L36			7	LOC_Os07g17460. Os_F0439 in Hua et al. 2011.		Os07g0276000	LOC_Os07g17460.1				GO:0003824 - catalytic activity		
17139	_	OsFbox363, Os_F0353, OsFBLD5, FBLD5	_	F-box protein 363, F-box-type E3 ubiquitin ligase FBLD5			7	LOC_Os07g18510. Os_F0353 in Hua et al. 2011.		Os07g0285200	LOC_Os07g18510.1				GO:0003824 - catalytic activity		
17140	_	OsFbox364, Os_F0107, OsFBLD6, FBLD6	_	F-box protein 364, F-box-type E3 ubiquitin ligase FBLD6			7	LOC_Os07g18560. Os_F0107 in Hua et al. 2011.		Os07g0285700	LOC_Os07g18560.1				GO:0003824 - catalytic activity		
17141	_	OsFbox365, Os_F0205, OsFBL37, FBL37	_	F-box protein 365, F-box-type E3 ubiquitin ligase L37			7	LOC_Os07g18600. Os_F0205 in Hua et al. 2011.		Os07g0285900	LOC_Os07g18580.1, LOC_Os07g18600.1				GO:0003824 - catalytic activity		
17142	_	OsFbox366, Os_F0784, OsFBLD7, FBLD7	_	F-box protein 366, F-box-type E3 ubiquitin ligase FBLD7			7	LOC_Os07g18610. Os_F0784 in Hua et al. 2011.		Os07g0286300	LOC_Os07g18610.1				GO:0003824 - catalytic activity		
17143	_	OsFbox367, Os_F0432, OsFBLD8, FBLD8	_	F-box protein 367, F-box-type E3 ubiquitin ligase FBLD8			7	LOC_Os07g18710. Os_F0432 in Hua et al. 2011.		Os07g0287000	LOC_Os07g18710.1				GO:0003824 - catalytic activity		
17144	_	OsFbox368, Os_F0425, OsFBDUF36, FBDUF36	_	F-box protein 368, F-box-type E3 ubiquitin ligase FBDUF36			7	LOC_Os07g23890. Os_F0425 in Hua et al. 2011.		Os07g0420900	LOC_Os07g23890.1				GO:0003824 - catalytic activity		
17145	_	OsFbox370, Os_F0625, OsFBDUF37, FBDUF37	_	F-box protein 370, F-box-type E3 ubiquitin ligase FBDUF37			7	LOC_Os07g25800. Os_F0625 in Hua et al. 2011.		Os07g0440000	LOC_Os07g25800.1				GO:0003824 - catalytic activity		
17146	_	OsFbox371, Os_F0357, OsFBX235, FBX235	_	F-box protein 371, F-box-type E3 ubiquitin ligase X235			7	LOC_Os07g26000. Os_F0357 in Hua et al. 2011.		Os07g0442000	LOC_Os07g26000.1				GO:0003824 - catalytic activity		
17147	_	OsFbox372, Os_F0371	_	F-box protein 372			7	LOC_Os07g27030. Os_F0371 in Hua et al. 2011.			LOC_Os07g27030				GO:0003824 - catalytic activity		
17148	_	OsFbox373, Os_F0163, OsFBL38, FBL38	_	F-box protein 373, F-box-type E3 ubiquitin ligase L38			7	LOC_Os07g31680. Os_F0163 in Hua et al. 2011.		Os07g0499900	LOC_Os07g31680.1				GO:0003824 - catalytic activity		
17149	_	OsFbox374, Os_F0598	_	F-box protein 374			7	LOC_Os07g33400 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0598 in Hua et al. 2011.							GO:0003824 - catalytic activity		
17150	_	OsFbox375, Os_F0062, OsFBX237, FBX237	_	F-box protein 375, F-box-type E3 ubiquitin ligase X237			7	LOC_Os07g35050. Os_F0062 in Hua et al. 2011.		Os07g0535100	LOC_Os07g35050.1				GO:0003824 - catalytic activity		
17151	_	OsFbox376, Os_F0063, OsFBX238, FBX238	_	F-box protein 376, F-box-type E3 ubiquitin ligase X238			7	LOC_Os07g35060. Os_F0063 in Hua et al. 2011.		Os07g0535200	LOC_Os07g35060.1, LOC_Os07g35060.2				GO:0003824 - catalytic activity		
17152	_	OsFbox377, Os_F0465	_	F-box protein 377			7	LOC_Os07g35070. Os_F0465 in Hua et al. 2011.			LOC_Os07g35070				GO:0003824 - catalytic activity		
17153	_	OsFbox378, Os_F0217, OsFBX241, FBX241	_	F-box protein 378, F-box-type E3 ubiquitin ligase X241			7	LOC_Os07g36280. Os_F0217 in Hua et al. 2011.		Os07g0546800	LOC_Os07g36280.1				GO:0003824 - catalytic activity		
17154	_	OsFbox379, Os_F0261, OsFBX242, FBX242	_	F-box protein 379, F-box-type E3 ubiquitin ligase X242			7	LOC_Os07g36290. Os_F0261 in Hua et al. 2011.		Os07g0547100	LOC_Os07g36290.1				GO:0003824 - catalytic activity		
17155	_	OsFbox380, Os_F0423, OsFBX243, FBX243	_	F-box protein 380, F-box-type E3 ubiquitin ligase X243			7	LOC_Os07g36300. Os_F0423 in Hua et al. 2011.		Os07g0547200	LOC_Os07g36300.1				GO:0003824 - catalytic activity		
17156	_	OsFbox381, Os_F0656	_	F-box protein 381			7	LOC_Os07g36320. Os_F0656 in Hua et al. 2011.			LOC_Os07g36320						
17157	_	OsFbox382, Os_F0731, OsFBX245, FBX245	_	F-box protein 382, F-box-type E3 ubiquitin ligase X245			7	LOC_Os07g36330. Os_F0731 in Hua et al. 2011.		Os07g0547600	LOC_Os07g36330.1						
17158	_	OsFbox383, Os_F0702, OsFBX246, FBX246	_	F-box protein 383, F-box-type E3 ubiquitin ligase X246			7	LOC_Os07g36340. Os_F0702 in Hua et al. 2011.		Os07g0547700	LOC_Os07g36340.1						
17159	_	OsFbox384, Os_F0579, OsFBX247, FBX247	_	F-box protein 384, F-box-type E3 ubiquitin ligase X247			7	LOC_Os07g36370. Os_F0579 in Hua et al. 2011.		Os07g0548100	LOC_Os07g36370.1						
17160	_	OsFbox385, Os_F0148, OsFBX248, FBX248	_	F-box protein 385, F-box-type E3 ubiquitin ligase X248			7	LOC_Os07g36520. Os_F0148 in Hua et al. 2011.		Os07g0550300	LOC_Os07g36520.1						
17161	_	OsFbox386, Os_F0523, OsFBX249, FBX249	_	F-box protein 386, F-box-type E3 ubiquitin ligase X249			7	LOC_Os07g36530. Os_F0523 in Hua et al. 2011.		Os07g0550432	LOC_Os07g36530.1						
17162	_	OsFbox387, Os_F0534, OsFBX250, FBX250	_	F-box protein 387, F-box-type E3 ubiquitin ligase X250			7	LOC_Os07g36830. Os_F0534 in Hua et al. 2011.		Os07g0554100	LOC_Os07g36830.1						
17163	_	OsFbox388, Os_F0605, OsFBX251, FBX251	_	F-box protein 388, F-box-type E3 ubiquitin ligase X251			7	LOC_Os07g36840. Os_F0605 in Hua et al. 2011.		Os07g0554200	LOC_Os07g36840.1						
17164	_	OsFbox389, Os_F0673, OsFBX252, FBX252	_	F-box protein 389, F-box-type E3 ubiquitin ligase X252			7	LOC_Os07g36870. Os_F0673 in Hua et al. 2011.		Os07g0554500	LOC_Os07g36870.1						
17165	_	OsFbox390, Os_F0759, OsFBX488, FBX488	_	F-box protein 390, F-box-type E3 ubiquitin ligase X488			7	LOC_Os07g36880. Os_F0759 in Hua et al. 2011.		Os07g0554600	LOC_Os07g36880.1						
17166	_	OsFbox391, Os_F0082, OsFBX253, FBX253	_	F-box protein 391, F-box-type E3 ubiquitin ligase X253			7	LOC_Os07g36890. Os_F0082 in Hua et al. 2011.		Os07g0554700	LOC_Os07g36890.1						
17167	_	OsFbox392, Os_F0313, OsFBL39, FBL39	_	F-box protein 392, F-box-type E3 ubiquitin ligase L39			7	LOC_Os07g36900. Os_F0313 in Hua et al. 2011.		Os07g0554800	LOC_Os07g36900.1						
17168	_	OsFbox393, Os_F0462, OsFBX254, FBX254	_	F-box protein 393, F-box-type E3 ubiquitin ligase X254			7	LOC_Os07g36910. Os_F0462 in Hua et al. 2011.		Os07g0554900	LOC_Os07g36910.1, LOC_Os07g36910.2						
17169	FBOX394	OsFbox394, Os_F0722, OsFBX255, FBX255	F-BOX PROTEIN 394	F-box protein 394, F-box-type E3 ubiquitin ligase X255	F-BOX PROTEIN 394		7	Os_F0722 in Hua et al. 2011. a candidate gene regulating length/width ratio (LWR). OsFbox394 was located in the linkage disequilibrium (LD) block of qLWR7-2.	 Seed - Morphological traits - Grain shape	Os07g0555000	LOC_Os07g36920.1				GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0009010 - seed , PO:0009089 - endosperm , PO:0001170 - seed development stage 
17170	_	OsFbox395, Os_F0032	_	F-box protein 395			7	LOC_Os07g37080. Os_F0032 in Hua et al. 2011.			LOC_Os07g37080						
17171	FBOX396	OsFbox396, Os_F0578, OsMsr9, Msr9, OsFBX257, FBX257	F-BOX PROTEIN 396	F-box protein 396, F-box-type E3 ubiquitin ligase X257	F-BOX PROTEIN 396		7	Os_F0578 in Hua et al. 2011. OsFBX257 in Sharma et al. 2021.	 Tolerance and resistance - Stress tolerance	Os07g0561300	LOC_Os07g37400.1				GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
17172	_	OsFbox397, Os_F0108, OsFBX258, FBX258	_	F-box protein 397, F-box-type E3 ubiquitin ligase X258			7	LOC_Os07g42590. Os_F0108 in Hua et al. 2011.		Os07g0617700	LOC_Os07g42590.1						
17173	_	OsFbox399, Os_F0281, OsFBX259, FBX259	_	F-box protein 399, F-box-type E3 ubiquitin ligase X259			7	Os_F0281 in Hua et al. 2011.		Os07g0667500/Os07g0667601	LOC_Os07g47160.1						
17174	_	OsFbox400, Os_F0541, OsFBK19, FBK19	_	F-box protein 400, F-box-type E3 ubiquitin ligase K19			7	LOC_Os07g47650. Os_F0541 in Hua et al. 2011.		Os07g0673700	LOC_Os07g47650.1				GO:0016301 - kinase activity		
17175	_	OsFbox401, Os_F0042, OsFBDUF39, FBDUF39	_	F-box protein 401, F-box-type E3 ubiquitin ligase FBDUF39			7	LOC_Os07g48940. Os_F0042 in Hua et al. 2011.		Os07g0689000	LOC_Os07g48940.1						
17176	_	OsFbox403, Os_F0338, OsFBX260, FBX260	_	F-box protein 403, F-box-type E3 ubiquitin ligase X260			8	LOC_Os08g01430. Os_F0338 in Hua et al. 2011.		Os08g0105100	LOC_Os08g01430.1						
17177	_	OsFbox404, Os_F0566, OsFBDUF40, FBDUF40	_	F-box protein 404, F-box-type E3 ubiquitin ligase FBDUF40			8	LOC_Os08g03300. Os_F0566 in Hua et al. 2011.		Os08g0126500	LOC_Os08g03300.1						
17178	_	OsFbox405, Os_F0623, OsFBDUF41, FBDUF41	_	F-box protein 405, F-box-type E3 ubiquitin ligase FBDUF41			8	LOC_Os08g03320. Os_F0623 in Hua et al. 2011.		Os08g0126800	LOC_Os08g03320.1						
17179	_	OsFbox406, Os_F0075, OsFBL40, FBL40	_	F-box protein 406, F-box-type E3 ubiquitin ligase L40			8	LOC_Os08g05460. Os_F0075 in Hua et al. 2011.		Os08g0150500	LOC_Os08g05460.1						
17180	_	OsFbox407, Os_F0406, OsFBX261, FBX261	_	F-box protein 407, F-box-type E3 ubiquitin ligase X261			8	LOC_Os08g05480. Os_F0406 in Hua et al. 2011.		Os08g0150700	LOC_Os08g05480.1						
17181	_	OsFbox408, Os_F0490, OsFBX262, FBX262	_	F-box protein 408, F-box-type E3 ubiquitin ligase X262			8	LOC_Os08g09220. Os_F0490 in Hua et al. 2011.		Os08g0191300	LOC_Os08g09220.1						
17182	_	OsFbox409, Os_F0265, OsFBX263, FBX263	_	F-box protein 409, F-box-type E3 ubiquitin ligase X263			8	LOC_Os08g09380. Os_F0265 in Hua et al. 2011.		Os08g0193200	LOC_Os08g09380.1						
17183	_	OsFbox410, Os_F0192, OsFBX264, FBX264	_	F-box protein 410, F-box-type E3 ubiquitin ligase X264			8	LOC_Os08g09390. Os_F0192 in Hua et al. 2011.		Os08g0193300	LOC_Os08g09390.1						
17184	_	OsFbox411, Os_F0280, OsFBX265, FBX265	_	F-box protein 411, F-box-type E3 ubiquitin ligase X265			8	LOC_Os08g09410. Os_F0280 in Hua et al. 2011.		Os08g0193500	LOC_Os08g09410.1						
17185	_	OsFbox412, Fbox412, Os_F0356, OsFBX266, FBX266	_	F-box protein 412, F-box-type E3 ubiquitin ligase X266			8	LOC_Os08g09420. Os_F0356 in Hua et al. 2011.		Os08g0193600	LOC_Os08g09420.1						
17186	_	OsFbox413, Os_F0321, OsFBL41, FBL41	_	F-box protein 413, F-box-type E3 ubiquitin ligase L41			8	LOC_Os08g09450. Os_F0321 in Hua et al. 2011.		Os08g0193900	LOC_Os08g09450.1						
17187	_	OsFbox414, Os_F0654, OsFBX267, FBX267	_	F-box protein 414, F-box-type E3 ubiquitin ligase X267			8	LOC_Os08g09460. Os_F0654 in Hua et al. 2011.		Os08g0194000	LOC_Os08g09460.1						
17188	_	OsFbox415, Os_F0498	_	F-box protein 415			8	LOC_Os08g09480. Os_F0498 in Hua et al. 2011.			LOC_Os08g09480						
17189	_	OsFbox416, Os_F0464, OsFBL42, FBL42	_	F-box protein 416, F-box-type E3 ubiquitin ligase L42			8	LOC_Os08g09590. Os_F0464 in Hua et al. 2011.		Os08g0195000	LOC_Os08g09590.1						
17190	_	OsFbox417, Os_F0682, OsFBL43, FBL43	_	F-box protein 417, F-box-type E3 ubiquitin ligase L43			8	LOC_Os08g09640. Os_F0682 in Hua et al. 2011.		Os08g0195800	LOC_Os08g09640.1						
17191	_	OsFbox418, Os_F0453, OsFBX269, FBX269	_	F-box protein 418, F-box-type E3 ubiquitin ligase X269			8	LOC_Os08g09650. Os_F0453 in Hua et al. 2011.		Os08g0195900	LOC_Os08g09650.1						
17192	_	OsFbox420, Os_F0206, OsFBX271, FBX271	_	F-box protein 420, F-box-type E3 ubiquitin ligase X271			8	LOC_Os08g09710. Os_F0206 in Hua et al. 2011.		Os08g0197000	LOC_Os08g09710.1						
17193	_	OsFbox421, Os_F0249, OsFBX272, FBX272	_	F-box protein 421, F-box-type E3 ubiquitin ligase X272			8	LOC_Os08g09720. Os_F0249 in Hua et al. 2011.		Os08g0197100	LOC_Os08g09720.1						
17194	_	OsFbox422, Os_F0246, OsFBX273, FBX273	_	F-box protein 422, F-box-type E3 ubiquitin ligase X273			8	LOC_Os08g09730. Os_F0246 in Hua et al. 2011.		Os08g0197200	LOC_Os08g09730.1						
17195	_	OsFbox423, Os_F0386, OsFBX274, FBX274	_	F-box protein 423, F-box-type E3 ubiquitin ligase X274			8	LOC_Os08g09740. Os_F0386 in Hua et al. 2011.		Os08g0197300	LOC_Os08g09740.1						
17196	_	OsFbox424, Os_F0348, OsFBL44, FBL44	_	F-box protein 424, F-box-type E3 ubiquitin ligase L44			8	LOC_Os08g09750. Os_F0348 in Hua et al. 2011.		Os08g0197400	LOC_Os08g09750.1						
17197	_	OsFbox425, Os_F0168, OsFBX275, FBX275	_	F-box protein 425, F-box-type E3 ubiquitin ligase X275			8	LOC_Os08g09760. Os_F0168 in Hua et al. 2011.		Os08g0197500	LOC_Os08g09760.1, LOC_Os08g09760.2						
17198	_	OsFbox426, Os_F0184, OsFBX276, FBX276	_	F-box protein 426, F-box-type E3 ubiquitin ligase X276			8	LOC_Os08g09910. Os_F0184 in Hua et al. 2011.		Os08g0199000	LOC_Os08g09910.1						
17199	_	OsFbox427, Os_F0221, OsFBX277, FBX277	_	F-box protein 427, F-box-type E3 ubiquitin ligase X277			8	LOC_Os08g09920. Os_F0221 in Hua et al. 2011.		Os08g0199100	LOC_Os08g09920.1, LOC_Os08g09920.2						
17200	_	OsFbox428, Os_F0440, OsFBX278, FBX278	_	F-box protein 428, F-box-type E3 ubiquitin ligase X278			8	LOC_Os08g10340. Os_F0440 in Hua et al. 2011.		Os08g0203800	LOC_Os08g10340.1						
17201	_	OsFbox429, Os_F0367	_	F-box protein 429			8	LOC_Os08g16630. Os_F0367 in Hua et al. 2011.			LOC_Os08g16630						
17202	_	OsFbox430, Os_F0456, OsFBX280, FBX280	_	F-box protein 430, F-box-type E3 ubiquitin ligase X280			8	LOC_Os08g16670. Os_F0456 in Hua et al. 2011.		Os08g0267000	LOC_Os08g16670.1						
17203	_	OsFbox431, Os_F0614, OsFBX281, FBX281	_	F-box protein 431, F-box-type E3 ubiquitin ligase X281			8	LOC_Os08g16710. Os_F0614 in Hua et al. 2011.		Os08g0267800	LOC_Os08g16710.1						
17204	_	OsFbox432, Os_F0694, OsFBL45, FBL45	_	F-box protein 432, F-box-type E3 ubiquitin ligase L45			8	LOC_Os08g16840. Os_F0694 in Hua et al. 2011.		Os08g0269800	LOC_Os08g16840.1						
17205	_	OsFbox433, Os_F0239, OsFBX282, FBX282	_	F-box protein 433, F-box-type E3 ubiquitin ligase X282			8	LOC_Os08g16860. Os_F0239 in Hua et al. 2011.		Os08g0270000	LOC_Os08g16860.1						
17206	_	OsFbox435, Os_F0317, OsFBO20, FBO20	_	F-box protein 435, F-box-type E3 ubiquitin ligase O20			8	LOC_Os08g20480. Os_F0317 in Hua et al. 2011.		Os08g0299700	LOC_Os08g20480.1						
17207	_	OsFbox436, Os_F0146	_	F-box protein 436			8	LOC_Os08g20492. Os_F0146 in Hua et al. 2011.			LOC_Os08g20492						
17208	_	OsFbox437, Os_F0277, OsFBL46, FBL46	_	F-box protein 437, F-box-type E3 ubiquitin ligase L46			8	LOC_Os08g23960. Os_F0277 in Hua et al. 2011.		Os08g0328600	LOC_Os08g23960.1						
17209	_	OsFbox438, Os_F0427, OsFBL47, FBL47	_	F-box protein 438, F-box-type E3 ubiquitin ligase L47			8	LOC_Os08g24140. Os_F0427 in Hua et al. 2011.		Os08g0330200	LOC_Os08g24140.1						
17210	_	OsFbox439, Os_F0320	_	F-box protein 439			8	LOC_Os08g24370. Os_F0320 in Hua et al. 2011.			LOC_Os08g24370						
17211	_	OsFbox440, Os_F0542, OsFBDUF44, FBDUF44	_	F-box protein 440, F-box-type E3 ubiquitin ligase FBDUF44			8	LOC_Os08g24830. Os_F0542 in Hua et al. 2011.		Os08g0336000	LOC_Os08g24830.1						
17212	_	OsFbox441, Os_F0010, OsFBX288, FBX288	_	F-box protein 441, F-box-type E3 ubiquitin ligase X288			8	LOC_Os08g27190. Os_F0010 in Hua et al. 2011.		Os08g0360400	LOC_Os08g27190.1						
17213	_	OsFbox443, Os_F0084, OsSTA212, OsFBX290, FBX290	_	F-box protein 443, F-box-type E3 ubiquitin ligase X290			8	Os_F00840 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0382800/Os08g0383250	LOC_Os08g29400.1, LOC_Os08g29400.2						PO:0009066 - anther 
17214	_	OsFbox444, Os_F0648, OsFBX291, FBX291	_	F-box protein 444, F-box-type E3 ubiquitin ligase X291			8	LOC_Os08g31690. Os_F0648 in Hua et al. 2011.		Os08g0410266	LOC_Os08g31690.1						
17215	_	OsFbox445, Os_F0550, OsFBX479, FBX479	_	F-box protein 445, F-box-type E3 ubiquitin ligase X479			8	LOC_Os08g33140. Os_F0550 in Hua et al. 2011.		Os08g0428100	LOC_Os08g33140.1						
17216	_	OsFbox446, Os_F0095, OsFBX292, FBX292	_	F-box protein 446, F-box-type E3 ubiquitin ligase X292			8	LOC_Os08g34820. Os_F0095 in Hua et al. 2011.		Os08g0448300	LOC_Os08g34820.1						
17217	_	OsFbox447, Os_F0225, OsFBX293, FBX293	_	F-box protein 447, F-box-type E3 ubiquitin ligase X293			8	LOC_Os08g34860. Os_F0225 in Hua et al. 2011.		Os08g0449100	LOC_Os08g34860.1						
17218	_	OsFbox448, Os_F0428, OsFBDUF46, FBDUF46	_	F-box protein 448, F-box-type E3 ubiquitin ligase FBDUF46			8	LOC_Os08g34890. Os_F0428 in Hua et al. 2011.		Os08g0449700	LOC_Os08g34890.1						
17219	_	OsFbox449, Os_F0345, OsFBL48, FBL48	_	F-box protein 449, F-box-type E3 ubiquitin ligase L48			8	LOC_Os08g35870. Os_F0345 in Hua et al. 2011.		Os08g0460800	LOC_Os08g35870.1, LOC_Os08g35870.2						
17220	_	OsFbox450, Os_F0185, OsFBX294, FBX294	_	F-box protein 450, F-box-type E3 ubiquitin ligase X294			8	LOC_Os08g35880. Os_F0185 in Hua et al. 2011.		Os08g0460900	LOC_Os08g35880.1						
17221	_	OsFbox451, Os_F0189, OsFBL49, FBL49	_	F-box protein 451, F-box-type E3 ubiquitin ligase L49			8	LOC_Os08g35900. Os_F0189 in Hua et al. 2011.		Os08g0461000	LOC_Os08g35900.1, LOC_Os08g35900.2						
17222	_	OsFbox452, Os_F0193, OsFBL50, FBL50	_	F-box protein 452, F-box-type E3 ubiquitin ligase L50			8	LOC_Os08g35930. Os_F0193 in Hua et al. 2011.		Os08g0461300	LOC_Os08g35930.1, LOC_Os08g35930.2						
17223	_	OsFbox453, Os_F0339, OsFBD14, FBD14	_	F-box protein 453, F-box-type E3 ubiquitin ligase D14			8	LOC_Os08g35960. Os_F0339 in Hua et al. 2011.		Os08g0461800	LOC_Os08g35960.1, LOC_Os08g35960.2, LOC_Os08g35960.3						
17224	_	OsFbox454, Os_F0207, OsFBL51, FBL51	_	F-box protein 454, F-box-type E3 ubiquitin ligase L51			8	LOC_Os08g36000. Os_F0207 in Hua et al. 2011.		Os08g0462200	LOC_Os08g36000.1						
17225	_	OsFbox455, Os_F0173, OsFBX295, FBX295	_	F-box protein 455, F-box-type E3 ubiquitin ligase X295			8	LOC_Os08g36010. Os_F0173 in Hua et al. 2011.		Os08g0462300	LOC_Os08g36010.1						
17226	_	OsFbox456, Fbox456, Os_F0543, OsFBX296, FBX296	_	F-box protein 456, F-box-type E3 ubiquitin ligase X296			8	LOC_Os08g36960. Os_F0543 in Hua et al. 2011.	 Biochemical character,  Reproductive organ	Os08g0474400	LOC_Os08g36960.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process		PO:0000084 - plant sperm cell 
17227	_	OsFbox457, Os_F0575, OsFBX297, FBX297	_	F-box protein 457, F-box-type E3 ubiquitin ligase X297			8	LOC_Os08g38330. Os_F0575 in Hua et al. 2011.		Os08g0491300	LOC_Os08g38330.1						
17228	_	OsFbox458, Os_F0530, OsFBX298, FBX298	_	F-box protein 458, F-box-type E3 ubiquitin ligase X298			8	LOC_Os08g38360. Os_F0530 in Hua et al. 2011.		Os08g0491600	LOC_Os08g38360.1						
17229	_	OsFbox459, Os_F0074, OsFBX299, FBX299	_	F-box protein 459, F-box-type E3 ubiquitin ligase X299			8	LOC_Os08g38470. Os_F0074 in Hua et al. 2011.		Os08g0492900	LOC_Os08g38470.1						
17230	_	OsFbox460, Os_F0200, OsFBX300, FBX300	_	F-box protein 460, F-box-type E3 ubiquitin ligase X300			8	LOC_Os08g38480. Os_F0200 in Hua et al. 2011.		Os08g0493100	LOC_Os08g38480.1						
17231	_	OsFbox461, Os_F0025, OsFBX301, FBX301	_	F-box protein 461, F-box-type E3 ubiquitin ligase X301			8	LOC_Os08g38490. Os_F0025 in Hua et al. 2011.		Os08g0493200	LOC_Os08g38490.1						
17232	_	OsFbox462, Os_F0019, OsFBX302, FBX302	_	F-box protein 462, F-box-type E3 ubiquitin ligase X302			8	LOC_Os08g38520. Os_F0019 in Hua et al. 2011.		Os08g0493450	LOC_Os08g38520.1						
17233	_	OsFbox463, Os_F0230, OsFBX303, FBX303	_	F-box protein 463, F-box-type E3 ubiquitin ligase X303			8	LOC_Os08g41750. Os_F0230 in Hua et al. 2011.		Os08g0529300	LOC_Os08g41750.1						
17234	_	OsFbox464, Os_F0048, OsFBX304, FBX304	_	F-box protein 464, F-box-type E3 ubiquitin ligase X304			8	LOC_Os08g41760. Os_F0048 in Hua et al. 2011.		Os08g0529400	LOC_Os08g41760.1						
17235	_	OsFbox465, Os_F0016	_	F-box protein 465			8	LOC_Os08g43220. Os_F0016 in Hua et al. 2011.			LOC_Os08g43220						
17236	_	OsFbox466, Os_F0587, OsFBX306, FBX306	_	F-box protein 466, F-box-type E3 ubiquitin ligase X306			8	LOC_Os08g43530. Os_F0587 in Hua et al. 2011.		Os08g0548800	LOC_Os08g43530.1						
17237	_	OsFbox467, Os_F0397, OsFBX307, FBX307	_	F-box protein 467, F-box-type E3 ubiquitin ligase X307			9	LOC_Os09g06620. Os_F0397 in Hua et al. 2011.		Os09g0241550	LOC_Os09g06620.1						
17238	_	OsFbox468, Os_F0398, OsFBX308, FBX308	_	F-box protein 468, F-box-type E3 ubiquitin ligase X308			9	LOC_Os09g08550. Os_F0398 in Hua et al. 2011.		Os09g0260000	LOC_Os09g08550.1						
17239	_	OsFbox469, Os_F0272, OsFBX309, FBX309	_	F-box protein 469, F-box-type E3 ubiquitin ligase X309			9	LOC_Os09g08620. Os_F0272 in Hua et al. 2011.		Os09g0261100	LOC_Os09g08620.1						
17240	_	OsFbox470, Os_F0504, OsFBX311, FBX311	_	F-box protein 470, F-box-type E3 ubiquitin ligase X311			9	LOC_Os09g15440. Os_F0504 in Hua et al. 2011.		Os09g0323200	LOC_Os09g15440.1						
17241	_	OsFbox471, Os_F0538, OsFBX312, FBX312	_	F-box protein 471, F-box-type E3 ubiquitin ligase X312			9	LOC_Os09g15540. Os_F0538 in Hua et al. 2011.		Os09g0324200	LOC_Os09g15540.1						
17242	_	OsFbox472, Fbox472, Os_F0599, OsFBX313, FBX313, OsFBX313, FBX313	_	F-box protein 472, F-box-type E3 ubiquitin ligase X313			9	Os_F0599 in Hua et al. 2011. OsFBX313 in Hwang et al. 2019.	 Tolerance and resistance - Stress tolerance	Os09g0324300	LOC_Os09g15550.1				GO:0010332 - response to gamma radiation, GO:0010212 - response to ionizing radiation	TO:0000161 - radiation response trait	
17243	_	OsFbox473, Os_F0455, OsFBX314, FBX314	_	F-box protein 473, F-box-type E3 ubiquitin ligase X314			9	LOC_Os09g15560. Os_F0455 in Hua et al. 2011.		Os09g0324400	LOC_Os09g15560.1						
17244	_	OsFbox474, Os_F0632, OsFBX315, FBX315	_	F-box protein 474, F-box-type E3 ubiquitin ligase X315			9	LOC_Os09g15570. Os_F0632 in Hua et al. 2011.		Os09g0324701	LOC_Os09g15570.1						
17245	_	OsFbox475, Os_F0634, OsFBX316, FBX316	_	F-box protein 475, F-box-type E3 ubiquitin ligase X316			9	LOC_Os09g15590. Os_F0634 in Hua et al. 2011.		Os09g0325220	LOC_Os09g15590.1						
17246	_	OsFbox476, Os_F0457, OsFBX317, FBX317	_	F-box protein 476, F-box-type E3 ubiquitin ligase X317			9	LOC_Os09g16810. Os_F0457 in Hua et al. 2011.		Os09g0337800	LOC_Os09g16810.1						
17247	_	OsFbox477, Os_F0147, OsFBX318, FBX318	_	F-box protein 477, F-box-type E3 ubiquitin ligase X318			9	LOC_Os09g17080. Os_F0147 in Hua et al. 2011.		Os09g0340800	LOC_Os09g17080.1						
17248	_	OsFbox478, Os_F0354, OsFBX319, FBX319	_	F-box protein 478, F-box-type E3 ubiquitin ligase X319			9	LOC_Os09g17152. Os_F0354 in Hua et al. 2011.		Os09g0341600	LOC_Os09g17152.1						
17249	_	OsFbox479, Os_F0399, OsFBX320, FBX320	_	F-box protein 479, F-box-type E3 ubiquitin ligase X320			9	LOC_Os09g17190. Os_F0399 in Hua et al. 2011.		Os09g0342000	LOC_Os09g17190.1						
17250	_	OsFbox480, Os_F0388	_	F-box protein 480			9	LOC_Os09g17530. Os_F0388 in Hua et al. 2011.			LOC_Os09g17530						
17251	_	OsFbox481, Os_F0362, FBX322, OsFBX322, OsFBX322, FBX322	_	F-box protein 481, F-box protein 322, F-box-type E3 ubiquitin ligase X322			9	Os_F0362 in Hua et al. 2011. FBX322 in Hwang et al. 2014, Hwang  et al. 2019. 	 Tolerance and resistance - Stress tolerance	Os09g0344400	LOC_Os09g17540.1				GO:0005634 - nucleus, GO:0010212 - response to ionizing radiation, GO:0009314 - response to radiation, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
17252	_	OsFbox482, Os_F0167, OsFBX323, FBX323	_	F-box protein 482, F-box-type E3 ubiquitin ligase X323			9	LOC_Os09g20650. Os_F0167 in Hua et al. 2011.		Os09g0372900	LOC_Os09g20650.1, LOC_Os09g20650.2						
17253	_	OsFbox483, Os_F0233, OsFBX324, FBX324	_	F-box protein 483, F-box-type E3 ubiquitin ligase X324			9	LOC_Os09g21580. Os_F0233 in Hua et al. 2011.		Os09g0384100	LOC_Os09g21580.1						
17254	_	OsFbox484, Os_F0373, OsFBX325, FBX325	_	F-box protein 484, F-box-type E3 ubiquitin ligase X325			9	LOC_Os09g21620. Os_F0373 in Hua et al. 2011.		Os09g0384300	LOC_Os09g21620.1						
17255	_	OsFbox485, Os_F0149, OsFBX326, FBX326	_	F-box protein 485, F-box-type E3 ubiquitin ligase X326			9	LOC_Os09g21700. Os_F0149 in Hua et al. 2011.		Os09g0385600	LOC_Os09g21700.1						
17256	_	OsFbox486, Os_F0355, OsFBX328, FBX328	_	F-box protein 486, F-box-type E3 ubiquitin ligase X328			9	LOC_Os09g22460. Os_F0355 in Hua et al. 2011.		Os09g0392200	LOC_Os09g22460.1						
17257	_	OsFbox487, Os_F0548, OsFBLD9, FBLD9	_	F-box protein 487, F-box-type E3 ubiquitin ligase FBLD9			9	LOC_Os09g27090. Os_F0548 in Hua et al. 2011.		Os09g0443000	LOC_Os09g27090.1						
17258	_	OsFbox488, Os_F0562, OsFBX329, FBX329	_	F-box protein 488, F-box-type E3 ubiquitin ligase X329			9	LOC_Os09g27100. Os_F0562 in Hua et al. 2011.		Os09g0443100	LOC_Os09g27100.1						
17259	_	OsFbox489, Os_F0053, OsFBA3, FBA3	_	F-box protein 489, F-box-type E3 ubiquitin ligase A3			9	LOC_Os09g27570. Os_F0053 in Hua et al. 2011.		Os09g0448100	LOC_Os09g27570.1						
17260	_	OsFbox490, Os_F0091	_	F-box protein 490			9	Os_F0091 in Hua et al. 2011.		Os09g0449600	LOC_Os09g27660.9, LOC_Os09g27660.8, LOC_Os09g27660.7, LOC_Os09g27660.6, LOC_Os09g27660.5, LOC_Os09g27660.4, LOC_Os09g27660.3, LOC_Os09g27660.2, LOC_Os09g27660.10, LOC_Os09g27660.1				GO:0008152 - metabolic process		
17261	_	OsFbox491, Os_F0580, OsFBX330, FBX330	_	F-box protein 491, F-box-type E3 ubiquitin ligase X330			9	LOC_Os09g28120. Os_F0580 in Hua et al. 2011.		Os09g0454300	LOC_Os09g28120.1				GO:0009506 - plasmodesma		
17262	_	OsFbox492, Os_F0175, OsFBX331, FBX331	_	F-box protein 492, F-box-type E3 ubiquitin ligase X331			9	LOC_Os09g30180. Os_F0175 in Hua et al. 2011.		Os09g0479100	LOC_Os09g30180.1, LOC_Os09g30180.2, LOC_Os09g30180.3, LOC_Os09g30180.4						
17263	_	OsFbox493, Os_F0049, OsFBX332, FBX332	_	F-box protein 493, F-box-type E3 ubiquitin ligase X332			9	LOC_Os09g32240. Os_F0049 in Hua et al. 2011.		Os09g0497600	LOC_Os09g32240.1, LOC_Os09g32240.2						
17264	_	OsFbox494, Os_F0637, OsFBX333, FBX333	_	F-box protein 494, F-box-type E3 ubiquitin ligase X333			9	LOC_Os09g32410. Os_F0637 in Hua et al. 2011.		Os09g0500100	LOC_Os09g32410.1						
17265	_	OsFbox495, Os_F0522, OsFBX334, FBX334	_	F-box protein 495, F-box-type E3 ubiquitin ligase X334			9	LOC_Os09g32600. Os_F0522 in Hua et al. 2011.		Os09g0502800	LOC_Os09g32600.1						
17266	_	OsFbox496, Os_F0287	_	F-box protein 496			9	LOC_Os09g32860. Os_F0287 in Hua et al. 2011.			LOC_Os09g32860						
17267	_	OsFbox497, Os_F0433, OsFBX336, FBX336	_	F-box protein 497, F-box-type E3 ubiquitin ligase X336			9	LOC_Os09g32870. Os_F0433 in Hua et al. 2011.		Os09g0506450	LOC_Os09g32870.1						
17268	_	OsFbox498, Os_F0145, OsFBX337, FBX337	_	F-box protein 498, F-box-type E3 ubiquitin ligase X337			9	LOC_Os09g32910. Os_F0145 in Hua et al. 2011.		Os09g0506700	LOC_Os09g32910.1						
17269	_	OsFbox499, Os_F0020, OsFBX338, FBX338	_	F-box protein 499, F-box-type E3 ubiquitin ligase X338			9	LOC_Os09g34200. Os_F0020 in Hua et al. 2011.		Os09g0517800	LOC_Os09g34200.1						
17270	_	OsFbox500, Os_F0186, OsFBX339, FBX339	_	F-box protein 500, F-box-type E3 ubiquitin ligase X339			9	LOC_Os09g35680. Os_F0186 in Hua et al. 2011.		Os09g0525300	LOC_Os09g35680.1						
17271	_	OsFbox501, Os_F0050, OsFBX340, FBX340	_	F-box protein 501, F-box-type E3 ubiquitin ligase X340			9	LOC_Os09g37570. Os_F0050 in Hua et al. 2011.		Os09g0547800	LOC_Os09g37570.1						
17272	_	OsFbox502, Os_F0060	_	F-box protein 502			9	Os_F0060 in Hua et al. 2011.		Os09g0548034/Os09g0548066/Os09g0548100	LOC_Os09g37590.1						
17273	_	OsFbox503, Os_F0101, OsFBK20, FBK20	_	F-box protein 503, F-box-type E3 ubiquitin ligase K20			9	LOC_Os09g38300. Os_F0101 in Hua et al. 2011.		Os09g0555300	LOC_Os09g38300.1						
17274	_	OsFbox504, Os_F0474, OsFBX341, FBX341	_	F-box protein 504, F-box-type E3 ubiquitin ligase X341			9	LOC_Os09g39000. Os_F0474 in Hua et al. 2011.		Os09g0563500	LOC_Os09g39000.1						
17275	_	OsFbox505, Os_F0638, OsFBX342, FBX342	_	F-box protein 505, F-box-type E3 ubiquitin ligase X342			9	LOC_Os09g39050. Os_F0638 in Hua et al. 2011.		Os09g0563950	LOC_Os09g39050.1						
17276	_	OsFbox506, Os_F0596, OsFBO22, FBO22	_	F-box protein 506, F-box-type E3 ubiquitin ligase O22			9	LOC_Os09g39190. Os_F0596 in Hua et al. 2011.		Os09g0565350	LOC_Os09g39190.1, LOC_Os09g39190.2						
17277	_	OsFbox507, Os_F0071, OsFBX343, FBX343	_	F-box protein 507, F-box-type E3 ubiquitin ligase X343			10	LOC_Os10g03600. Os_F0071 in Hua et al. 2011.		Os10g0124500	LOC_Os10g03600.1, LOC_Os10g03600.2						
17278	_	OsFbox508, Os_F0127, OsFBX344, FBX344	_	F-box protein 508, F-box-type E3 ubiquitin ligase X344			10	LOC_Os10g03620. Os_F0127 in Hua et al. 2011.		Os10g0124700	LOC_Os10g03620.1, LOC_Os10g03620.2						
17279	_	OsFbox509, Os_F0258, OsADF, ADF, OsFBX345, FBX345	_	F-box protein 509, anther development F-box, F-box-type E3 ubiquitin ligase X345			10	Os_F0258 in Hua et al. 2011.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility	Os10g0125300	LOC_Os10g03660.1				GO:0048657 - tapetal cell differentiation, GO:0009555 - pollen development, GO:0048653 - anther development	TO:0000214 - anther shape, TO:0000187 - anther color, TO:0000531 - anther length, TO:0000421 - pollen fertility	
17280	_	OsFbox510, Os_F0210, OsFBX346, FBX346	_	F-box protein 510, F-box-type E3 ubiquitin ligase X346			10	LOC_Os10g03690. Os_F0210 in Hua et al. 2011.		Os10g0126000	LOC_Os10g03690.1						
17281	_	OsFbox511, Os_F0112, OsFBX347, FBX347	_	F-box protein 511, F-box-type E3 ubiquitin ligase X347			10	LOC_Os10g03730. Os_F0112 in Hua et al. 2011.		Os10g0126500	LOC_Os10g03730.1						
17282	_	OsFbox512, Os_F0102, OsFBX348, FBX348	_	F-box protein 512, F-box-type E3 ubiquitin ligase X348			10	LOC_Os10g03740. Os_F0102 in Hua et al. 2011.		Os10g0126600	LOC_Os10g03740.1, LOC_Os10g03740.2						
17283	_	OsFbox513, Os_F0131, OsFBX349, FBX349	_	F-box protein 513, F-box-type E3 ubiquitin ligase X349			10	LOC_Os10g03750. Os_F0131 in Hua et al. 2011.		Os10g0126700	LOC_Os10g03750.1						
17284	_	OsFbox514, Os_F0140, OsFBX350, FBX350	_	F-box protein 514, F-box-type E3 ubiquitin ligase X350			10	LOC_Os10g03760. Os_F0140 in Hua et al. 2011.		Os10g0126800	LOC_Os10g03760.1						
17285	_	OsFbox515, Os_F0086, OsFBX351, FBX351	_	F-box protein 515, F-box-type E3 ubiquitin ligase X351			10	LOC_Os10g03780. Os_F0086 in Hua et al. 2011.		Os10g0126900	LOC_Os10g03780.1						
17286	_	OsFbox517, Os_F0054, OsFBX353, FBX353	_	F-box protein 517, F-box-type E3 ubiquitin ligase X353			10	LOC_Os10g03870. Os_F0054 in Hua et al. 2011.		Os10g0128200	LOC_Os10g03870.1						
17287	_	OsFbox518, Os_F0218, OsFBX354, FBX354	_	F-box protein 518, F-box-type E3 ubiquitin ligase X354			10	LOC_Os10g03910. Os_F0218 in Hua et al. 2011.		Os10g0128600	LOC_Os10g03910.1						
17288	_	OsFbox519, OsFBX355, FBX355	_	F-box protein 519, F-box-type E3 ubiquitin ligase X355			10	LOC_Os10g03930. 		Os10g0129100	LOC_Os10g03930.1						
17289	_	OsFbox520, Os_F0588, OsFBX356, FBX356	_	F-box protein 520, F-box-type E3 ubiquitin ligase X356			10	LOC_Os10g04020. Os_F0588 in Hua et al. 2011.		Os10g0130200	LOC_Os10g04020.1						
17290	_	OsFbox521, Os_F0526, OsFBX357, FBX357	_	F-box protein 521, F-box-type E3 ubiquitin ligase X357			10	LOC_Os10g04370. Os_F0526 in Hua et al. 2011.		Os10g0133100	LOC_Os10g04370.1, LOC_Os10g04370.2						
17291	_	OsFbox522, Os_F0408, OsFBX358, FBX358	_	F-box protein 522, F-box-type E3 ubiquitin ligase X358			10	LOC_Os10g04590. Os_F0408 in Hua et al. 2011.		Os10g0135300	LOC_Os10g04590.1						
17292	_	OsFbox523, Os_F0629, OsFBX359, FBX359	_	F-box protein 523, F-box-type E3 ubiquitin ligase X359			10	LOC_Os10g04600. Os_F0629 in Hua et al. 2011.		Os10g0135400	LOC_Os10g04600.1, LOC_Os10g04600.2, LOC_Os10g04600.3						
17293	_	OsFbox524, Os_F0561, OsFBX360, FBX360	_	F-box protein 524, F-box-type E3 ubiquitin ligase X360			10	LOC_Os10g04610. Os_F0561 in Hua et al. 2011.		Os10g0135500	LOC_Os10g04610.1, LOC_Os10g04610.2						
17294	_	OsFbox525, Os_F0176, OsFBX361, FBX361	_	F-box protein 525, F-box-type E3 ubiquitin ligase X361			10	LOC_Os10g04700. Os_F0176 in Hua et al. 2011.		Os10g0136200	LOC_Os10g04700.1, LOC_Os10g04700.2						
17295	_	OsFbox526, Os_F0056, OsFBX362, FBX362	_	F-box protein 526, F-box-type E3 ubiquitin ligase X362			10	LOC_Os10g04750. Os_F0056 in Hua et al. 2011.		Os10g0136750	LOC_Os10g04750.1						
17296	_	OsFbox527, Os_F0059, OsFBX363, FBX363	_	F-box protein 527, F-box-type E3 ubiquitin ligase X363			10	LOC_Os10g04780. Os_F0059 in Hua et al. 2011.		Os10g0137000	LOC_Os10g04780.1						
17297	_	OsFbox528, Os_F0224, OsFBO5, FBO5	_	F-box protein 528, F-box-type E3 ubiquitin ligase O5			10	LOC_Os10g04850. Os_F0224 in Hua et al. 2011.		Os10g0138000	LOC_Os10g04850.1				GO:0003677 - DNA binding		
17298	_	OsFbox529, Os_F0667, OsEnS-132, OsFBX364, FBX364	_	F-box protein 529, endosperm-specific gene 132, F-box-type E3 ubiquitin ligase X364			10	LOC_Os10g04900. Os_F0667 in Hua et al. 2011.		Os10g0138600	LOC_Os10g04900.1, LOC_Os10g04900.2						
17299	_	OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2, OsFBX365, FBX365	_	F-box protein 530, Paternally Expressed Gene 2, F-box-type E3 ubiquitin ligase X365		fbx365	10	LOC_Os10g04980. Os_F0198 in Hua et al. 2011. OsFBX365 in Yuan et al. 2017.	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os10g0139300	LOC_Os10g04980.1					TO:0000382 - 1000-seed weight, TO:0000266 - chalky endosperm, TO:0000104 - floury endosperm	PO:0009089 - endosperm 
17300	_	OsFbox531, Os_F0024, OsFBX367, FBX367	_	F-box protein 531, F-box-type E3 ubiquitin ligase X367			10	LOC_Os10g05200. Os_F0024 in Hua et al. 2011.		Os10g0141600	LOC_Os10g05200.1						
17301	_	OsFbox532, Os_F0058, OsFBX368, FBX368	_	F-box protein 532, F-box-type E3 ubiquitin ligase X368			10	LOC_Os10g05210. Os_F0058 in Hua et al. 2011.		Os10g0141700	LOC_Os10g05210.1, LOC_Os10g05210.2, LOC_Os10g05210.3						
17302	_	OsFbox533, Os_F0350, OsFBX369, FBX369	_	F-box protein 533, F-box-type E3 ubiquitin ligase X369			10	LOC_Os10g05240. Os_F0350 in Hua et al. 2011.		Os10g0142500	LOC_Os10g05240.1						
17303	_	OsFbox534, Os_F0527, OsFBX370, FBX370	_	F-box protein 534, F-box-type E3 ubiquitin ligase X370			10	LOC_Os10g05500. Os_F0527 in Hua et al. 2011.		Os10g0144800	LOC_Os10g05500.1						
17304	_	OsFbox535, Os_F0208, OsFBX371, FBX371	_	F-box protein 535, F-box-type E3 ubiquitin ligase X371			10	LOC_Os10g05520. Os_F0208 in Hua et al. 2011.		Os10g0145000	LOC_Os10g05520.1						
17305	_	OsFbox536, Os_F0201, OsFBX372, FBX372	_	F-box protein 536, F-box-type E3 ubiquitin ligase X372			10	LOC_Os10g05530. Os_F0201 in Hua et al. 2011.		Os10g0145100	LOC_Os10g05530.1, LOC_Os10g05530.2, LOC_Os10g05530.3						
17306	_	OsFbox537, Os_F0165, OsFBX373, FBX373	_	F-box protein 537, F-box-type E3 ubiquitin ligase X373			10	LOC_Os10g05540. Os_F0165 in Hua et al. 2011.		Os10g0145200	LOC_Os10g05540.1						
17307	_	OsFbox538, Os_F0470	_	F-box protein 538			10	LOC_Os10g05590. Os_F0470 in Hua et al. 2011.			LOC_Os10g05590						
17308	_	OsFbox539, Os_F0316, OsFBX375, FBX375	_	F-box protein 539, F-box-type E3 ubiquitin ligase X375			10	LOC_Os10g06700. Os_F0316 in Hua et al. 2011.		Os10g0155300	LOC_Os10g06700.1						
17309	_	OsFbox540, Os_F0468, OsFBX376, FBX376	_	F-box protein 540, F-box-type E3 ubiquitin ligase X376			10	LOC_Os10g10390. Os_F0468 in Hua et al. 2011.		Os10g0183300	LOC_Os10g10390.1						
17310	_	OsFbox541, Os_F0409, OsFBX377, FBX377	_	F-box protein 541, F-box-type E3 ubiquitin ligase X377			10	LOC_Os10g10410. Os_F0409 in Hua et al. 2011.		Os10g0183700	LOC_Os10g10410.1						
17311	_	OsFbox542, Os_F0480, OsSTA237, OsFBX378, FBX378	_	F-box protein 542, F-box-type E3 ubiquitin ligase X378			10	LOC_Os10g10420. Os_F0480 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0183800	LOC_Os10g10420.1						PO:0009066 - anther 
17312	_	OsFbox543, Os_F0162, OsFBX379, FBX379	_	F-box protein 543, F-box-type E3 ubiquitin ligase X379			10	LOC_Os10g10980. Os_F0162 in Hua et al. 2011.		Os10g0188000	LOC_Os10g10980.1						
17313	_	OsFbox544, Os_F0652, OsFBX380, FBX380	_	F-box protein 544, F-box-type E3 ubiquitin ligase X380			10	LOC_Os10g12200. Os_F0652 in Hua et al. 2011.		Os10g0197800	LOC_Os10g12200.1						
17314	_	OsFbox545, Os_F0535, OsFBX381, FBX381	_	F-box protein 545, F-box-type E3 ubiquitin ligase X381			10	LOC_Os10g17930. Os_F0535 in Hua et al. 2011.		Os10g0326400	LOC_Os10g17930.1						
17315	_	OsFbox546, Os_F0513, OsFBX382, FBX382	_	F-box protein 546, F-box-type E3 ubiquitin ligase X382			10	LOC_Os10g17940. Os_F0513 in Hua et al. 2011.		Os10g0326800	LOC_Os10g17940.1						
17316	_	OsFbox547, Os_F0119, OsFBK21, FBK21	_	F-box protein 547, F-box-type E3 ubiquitin ligase K21			10	LOC_Os10g21930. Os_F0119 in Hua et al. 2011.		Os10g0363600	LOC_Os10g21930.1, LOC_Os10g21930.2						
17317	_	OsFbox548, Os_F0160, OsFBX383, FBX383	_	F-box protein 548, F-box-type E3 ubiquitin ligase X383			10	LOC_Os10g24010. Os_F0160 in Hua et al. 2011.		Os10g0381700	LOC_Os10g24010.1						
17318	_	OsFbox549, Os_F0255, OsFBK22, FBK22	_	F-box protein 549, F-box-type E3 ubiquitin ligase K22			10	LOC_Os10g24900. Os_F0255 in Hua et al. 2011.		Os10g0388200	LOC_Os10g24900.1						
17319	_	OsFbox550, Os_F0263, OsFBX384, FBX384	_	F-box protein 550, F-box-type E3 ubiquitin ligase X384			10	LOC_Os10g25210. Os_F0263 in Hua et al. 2011.		Os10g0391200	LOC_Os10g25210.1, LOC_Os10g25210.2						
17320	_	OsFbox551, Os_F0073, OsFBX385, FBX385	_	F-box protein 551, F-box-type E3 ubiquitin ligase X385			10	LOC_Os10g25660. Os_F0073 in Hua et al. 2011.		Os10g0396100	LOC_Os10g25660.1						
17321	_	OsFbox552, Os_F0216, OsFBL52, FBL52	_	F-box protein 552, F-box-type E3 ubiquitin ligase L52			10	Os_F0216 in Hua et al. 2011.		Os10g0396400/Os10g0396666	LOC_Os10g25680.1						
17322	_	OsFbox553, Os_F0250, OsFBK23, FBK23	_	F-box protein 553, F-box-type E3 ubiquitin ligase K23			10	LOC_Os10g26990. Os_F0250 in Hua et al. 2011. AY886238-AY886269 and DQ374994-DQ375021  (O. sativa and other wild rice species, partial cds).		Os10g0409900	LOC_Os10g26990.1						
17323	_	OsFbox554, Os_F0677, OsFBX386, FBX386	_	F-box protein 554, F-box-type E3 ubiquitin ligase X386			10	LOC_Os10g30280. Os_F0677 in Hua et al. 2011.		Os10g0438500	LOC_Os10g30280.1						
17324	_	OsFbox555, Os_F0152, OsFBX387, FBX387	_	F-box protein 555, F-box-type E3 ubiquitin ligase X387			10	LOC_Os10g34300. Os_F0152 in Hua et al. 2011.		Os10g0484100	LOC_Os10g34300.1						
17325	_	OsFbox556, Os_F0154, OsFBX388, FBX388	_	F-box protein 556, F-box-type E3 ubiquitin ligase X388			10	LOC_Os10g34340. Os_F0154 in Hua et al. 2011.		Os10g0484632	LOC_Os10g34340.1						
17326	_	OsFbox557, Fbox557, Os_F0256, OsFBX389, FBX389	_	F-box protein 557, F-box-type E3 ubiquitin ligase X389			10	LOC_Os10g35920. Os_F0256 in Hua et al. 2011.	 Seed - Morphological traits - Grain shape	Os10g0502900	LOC_Os10g35920.1					TO:0002730 - grain shape	
17327	_	OsFbox558, Os_F0376, OsFBX390, FBX390	_	F-box protein 558, F-box-type E3 ubiquitin ligase X390			10	LOC_Os10g36310. Os_F0376 in Hua et al. 2011.		Os10g0507300	LOC_Os10g36310.1						
17328	_	OsFbox559, Os_F0572, OsFBDUF49, FBDUF49	_	F-box protein 559, F-box-type E3 ubiquitin ligase FBDUF49			10	LOC_Os10g37570. Os_F0572 in Hua et al. 2011.		Os10g0520100	LOC_Os10g37570.1						
17329	_	OsFbox560, Os_F0582, OsFBX391, FBX391	_	F-box protein 560, F-box-type E3 ubiquitin ligase X391			10	LOC_Os10g37830. Os_F0582 in Hua et al. 2011.		Os10g0522400	LOC_Os10g37830.1, LOC_Os10g37830.2				GO:0009611 - response to wounding		
17330	_	OsFbox561, Os_F0014, OsFBX392, FBX392	_	F-box protein 561, F-box-type E3 ubiquitin ligase X392			10	LOC_Os10g41650. Os_F0014 in Hua et al. 2011.		Os10g0566300	LOC_Os10g41650.1				GO:0009611 - response to wounding		
17331	_	OsFbox562, Os_F0002	_	F-box protein 562			11	LOC_Os10g41829. Os_F0002 in Hua et al. 2011.			LOC_Os10g41829						
17332	_	OsFbox563, Os_F0773, OsFBL66, FBL66	_	F-box protein 563, F-box-type E3 ubiquitin ligase L66			11	LOC_Os11g01780. Os_F0773 in Hua et al. 2011.		Os11g0108932	LOC_Os11g01780.1						
17333	_	OsFbox564, Os_F0113, OsFBX394, FBX394	_	F-box protein 564, F-box-type E3 ubiquitin ligase X394			11	LOC_Os11g03610. Os_F0113 in Hua et al. 2011.		Os11g0130500	LOC_Os11g03610.1						
17334	_	OsFbox565, Os_F0027, OsFBX395, FBX395	_	F-box protein 565, F-box-type E3 ubiquitin ligase X395			11	LOC_Os11g03680. Os_F0027 in Hua et al. 2011.		Os11g0131300	LOC_Os11g03680.1						
17335	_	OsFbox566, Os_F0279, OsFBK24, FBK24	_	F-box protein 566, F-box-type E3 ubiquitin ligase K24			11	LOC_Os11g04330. Os_F0279 in Hua et al. 2011.		Os11g0138700	LOC_Os11g04330.1						
17336	_	OsFbox567, Os_F0713, OsFBX490, FBX490	_	F-box protein 567, F-box-type E3 ubiquitin ligase X490			11	LOC_Os11g05580. Os_F0713 in Hua et al. 2011.		Os11g0154100	LOC_Os11g05580.1						
17337	_	OsFbox568, Os_F0335, OsFBX396, FBX396	_	F-box protein 568, F-box-type E3 ubiquitin ligase X396			11	LOC_Os11g05660. Os_F0335 in Hua et al. 2011.		Os11g0155100	LOC_Os11g05660.1						
17338	_	OsFbox570, Os_F0219, OsFBX397, FBX397	_	F-box protein 570, F-box-type E3 ubiquitin ligase X397			11	LOC_Os11g06580. Os_F0219 in Hua et al. 2011.		Os11g0166100	LOC_Os11g06580.1						
17339	_	OsFbox572, Os_F0135, OsFBX398, FBX398	_	F-box protein 572, F-box-type E3 ubiquitin ligase X398			11	LOC_Os11g09360. Os_F0135 in Hua et al. 2011.		Os11g0199900	LOC_Os11g09360.1						
17340	_	OsFbox573	_	F-box protein 573			11	LOC_Os11g09430 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17341	_	OsFbox574	_	F-box protein 574			11	LOC_Os11g09480 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17342	_	OsFbox575	_	F-box protein 575			11	LOC_Os11g09490 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17343	_	OsFbox576	_	F-box protein 576			11	LOC_Os11g09500 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17344	_	OsFbox577, Os_F0135	_	F-box protein 577			11	LOC_Os11g09510. Os_F0531 in Hua et al. 2011.			LOC_Os11g09510						
17345	_	OsFbox578, Os_F0136, OsFBL53, FBL53	_	F-box protein 578, F-box-type E3 ubiquitin ligase L53			11	LOC_Os11g09580. Os_F0136 in Hua et al. 2011.		Os11g0201480	LOC_Os11g09580.1						
17346	_	OsFbox579, Os_F0334	_	F-box protein 579			11	LOC_Os11g09590. Os_F0334 in Hua et al. 2011.			LOC_Os11g09590						
17347	_	OsFbox580, Os_F0096, OsFBX405, FBX405	_	F-box protein 580, F-box-type E3 ubiquitin ligase X405			11	LOC_Os11g09600. Os_F0096 in Hua et al. 2011.		Os11g0201600	LOC_Os11g09600.1						
17348	_	OsFbox581, Os_F0649	_	F-box protein 581			11	LOC_Os11g09620 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0649 in Hua et al. 2011.									
17349	_	OsFbox582, Os_F0511, OsFBX407, FBX407	_	F-box protein 582, F-box-type E3 ubiquitin ligase X407			11	LOC_Os11g09630. Os_F0511 in Hua et al. 2011.		Os11g0201900	LOC_Os11g09630.1						
17350	_	OsFbox583, Os_F0363, OsFBX408, FBX408	_	F-box protein 583, F-box-type E3 ubiquitin ligase X408			11	LOC_Os11g09640. Os_F0363 in Hua et al. 2011.		Os11g0202000	LOC_Os11g09640.1, LOC_Os11g09640.2						
17351	_	OsFbox584, Os_F0231, OsFBX409, FBX409	_	F-box protein 584, F-box-type E3 ubiquitin ligase X409			11	LOC_Os11g09670. Os_F0231 in Hua et al. 2011.		Os11g0202200	LOC_Os11g09670.1, LOC_Os11g09670.2						
17352	_	OsFbox585, Os_F0294, OsFBX410, FBX410	_	F-box protein 585, F-box-type E3 ubiquitin ligase X410			11	LOC_Os11g09690. Os_F0294 in Hua et al. 2011.		Os11g0202400	LOC_Os11g09690.1						
17353	_	OsFbox586, Os_F0088, Fbox-13, OsFBX411, FBX411	_	F-box protein 586, F-box family-13, F-box-type E3 ubiquitin ligase X411			11	LOC_Os11g09970. Os_F0088 in Hua et al. 2011. J11-13: japonica in Ammiraju et al. 2008. 		Os11g0205900	LOC_Os11g09970.1						
17354	_	OsFbox587, Os_F0097, OsFBX412, FBX412	_	F-box protein 587, F-box-type E3 ubiquitin ligase X412			11	LOC_Os11g10180. Os_F0097 in Hua et al. 2011.		Os11g0208000	LOC_Os11g10180.1						
17355	_	OsFbox588, Os_F0365, Fbox-10, OsFBX413, FBX413	_	F-box protein 588, F-box family-10, F-box-type E3 ubiquitin ligase X413			11	LOC_Os11g10200. Os_F0365 in Hua et al. 2011. Fbox-10 (J11-10: japonica) in Ammiraju et al. 2008. 		Os11g0208100	LOC_Os11g10200.1						
17356	_	OsFbox589, Os_F0137, Fbox-8, OsFBX414, FBX414	_	F-box protein 589, F-box family-8, F-box-type E3 ubiquitin ligase X414			11	LOC_Os11g10240. Os_F0137 in Hua et al. 2011. Fbox-8 (J11-8: japonica) in Ammiraju et al. 2008. 		Os11g0208400	LOC_Os11g10240.1, LOC_Os11g10240.2						
17357	_	OsFbox590, Os_F0068, Fbox-6	_	F-box protein 590, F-box family-6			11	LOC_Os11g10300. Os_F0068 in Hua et al. 2011. Fbox-6 (J11-6: japonica) in Ammiraju et al. 2008. 			LOC_Os11g10300						
17358	_	OsFbox593, Os_F0278, Fbox-3, OsFBX418, FBX418	_	F-box protein 593, F-box family-3, F-box-type E3 ubiquitin ligase X418			11	LOC_Os11g10370. Os_F0278 in Hua et al. 2011. Fbox-3 (J11-3: japonica) in Ammiraju et al. 2008. 		Os11g0209400	LOC_Os11g10370.1						
17359	_	OsFbox595, Os_F0194, OsFBL54, FBL54	_	F-box protein 595, F-box-type E3 ubiquitin ligase L54			11	LOC_Os11g12480. Os_F0194 in Hua et al. 2011.		Os11g0231600	LOC_Os11g12480.1						
17360	_	OsFbox597, Os_F0447, OsFBX420, FBX420	_	F-box protein 597, F-box-type E3 ubiquitin ligase X420			11	LOC_Os11g15620. Os_F0447 in Hua et al. 2011.		Os11g0262500	LOC_Os11g15620.1						
17361	_	OsFbox598, Os_F0672, OsFBX480, FBX480	_	F-box protein 598, F-box-type E3 ubiquitin ligase X480			11	LOC_Os11g16280. Os_F0672 in Hua et al. 2011.		Os11g0264200	LOC_Os11g16280.1						
17362	_	OsFbox599, OsFBX492, FBX492	_	F-box protein 599, F-box-type E3 ubiquitin ligase X492			11	LOC_Os11g16330.		Os11g0264700	LOC_Os11g16330.1, LOC_Os11g16330.2, LOC_Os11g16330.3, LOC_Os11g16330.4						
17363	_	OsFbox600, Os_F0472, OsFBO4, FBO4	_	F-box protein 600, F-box-type E3 ubiquitin ligase O4			11	LOC_Os11g29710. Os_F0472 in Hua et al. 2011.		Os11g0488900	LOC_Os11g29710.1						
17364	_	OsFbox601, Os_F0719, OsFBL68, FBL68	_	F-box protein 601, F-box-type E3 ubiquitin ligase L68			11	LOC_Os11g32810. Os_F0719 in Hua et al. 2011.		Os11g0532600	LOC_Os11g32810.1						
17365	_	OsFbox602, Os_F0512, OsFBX421, FBX421	_	F-box protein 602, F-box-type E3 ubiquitin ligase X421			11	LOC_Os11g32940. Os_F0512 in Hua et al. 2011.		Os11g0533800	LOC_Os11g32940.1, LOC_Os11g32940.2, LOC_Os11g32940.3, LOC_Os11g32940.4						
17366	_	OsFbox603, Os_F0489, OsFBL56, FBL56	_	F-box protein 603, F-box-type E3 ubiquitin ligase L56			11	Os_F0489 in Hua et al. 2011.		Os11g0538300/Os11g0538350	LOC_Os11g33180.1						
17367	_	OsFbox604, Os_F0232, OsFBX422, FBX422	_	F-box protein 604, F-box-type E3 ubiquitin ligase X422			11	LOC_Os11g33190. Os_F0489 in Hua et al. 2011.		Os11g0538400	LOC_Os11g33190.1, LOC_Os11g33190.2						
17368	_	OsFbox605, Os_F0437, OsFBL57, FBL57	_	F-box protein 605, F-box-type E3 ubiquitin ligase L57			11	LOC_Os11g33210. Os_F0437 in Hua et al. 2011.		Os11g0538600	LOC_Os11g33210.1						
17369	_	OsFbox606, Os_F0155, OsFBX423, FBX423	_	F-box protein 606, F-box-type E3 ubiquitin ligase X423			11	LOC_Os11g33220. Os_F0155 in Hua et al. 2011.		Os11g0538700	LOC_Os11g33220.1						
17370	_	OsFbox607, Os_F0045, OsFBX424, FBX424	_	F-box protein 607, F-box-type E3 ubiquitin ligase X424			11	LOC_Os11g33310. Os_F0045 in Hua et al. 2011.		Os11g0539600	LOC_Os11g33310.1						
17371	_	OsFbox608, Os_F0043, OsFBX425, FBX425	_	F-box protein 608, F-box-type E3 ubiquitin ligase X425			11	LOC_Os11g33320. Os_F0043 in Hua et al. 2011.		Os11g0539700	LOC_Os11g33320.1						
17372	_	OsFbox610, Os_F0557, OsFBDUF50, FBDUF50	_	F-box protein 610, F-box-type E3 ubiquitin ligase FBDUF50			11	LOC_Os11g36350. Os_F0557 in Hua et al. 2011.		Os11g0572000	LOC_Os11g36350.1						
17373	_	OsFbox612, Os_F0268, OsFBDUF51, FBDUF51	_	F-box protein 612, F-box-type E3 ubiquitin ligase FBDUF51			11	LOC_Os11g36610. Os_F0268 in Hua et al. 2011.		Os11g0574500	LOC_Os11g36610.1						
17374	_	OsFbox613, Os_F0243, OsFBDUF52, FBDUF52	_	F-box protein 613, F-box-type E3 ubiquitin ligase FBDUF52			11	LOC_Os11g37060. Os_F0243 in Hua et al. 2011.		Os11g0579600	LOC_Os11g37060.1						
17375	_	OsFbox614, Os_F0381, OsFBDUF53, FBDUF53	_	F-box protein 614, F-box-type E3 ubiquitin ligase FBDUF53			11	LOC_Os11g37300. Os_F0381 in Hua et al. 2011.		Os11g0582700	LOC_Os11g37300.1						
17376	_	OsFbox615, Os_F0099, OsFBX426, FBX426	_	F-box protein 615, F-box-type E3 ubiquitin ligase X426			11	LOC_Os11g37340. Os_F0099 in Hua et al. 2011.		Os11g0583300	LOC_Os11g37340.1						
17377	_	OsFbox616, Os_F0314, OsFBDUF54, FBDUF54	_	F-box protein 616, F-box-type E3 ubiquitin ligase FBDUF54			11	LOC_Os11g37390. Os_F0314 in Hua et al. 2011.		Os11g0584100	LOC_Os11g37390.1						
17378	_	OsFbox617, Os_F0505, OsFBDUF55, FBDUF55	_	F-box protein 617, F-box-type E3 ubiquitin ligase FBDUF55			11	LOC_Os11g38100. Os_F0505 in Hua et al. 2011.		Os11g0593400	LOC_Os11g38100.1						
17379	_	OsFbox618, Os_F0583, OsFBDUF56, FBDUF56	_	F-box protein 618, F-box-type E3 ubiquitin ligase FBDUF56			11	LOC_Os11g38120. Os_F0583 in Hua et al. 2011.		Os11g0593500	LOC_Os11g38120.1						
17380	_	OsFbox619, Os_F0190, OsSTA265, OsFBDUF57, FBDUF57	_	F-box protein 619, F-box-type E3 ubiquitin ligase FBDUF57			11	LOC_Os11g38130. Os_F0190 in Hua et al. 2011. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0593600	LOC_Os11g38130.1						PO:0009066 - anther 
17381	_	OsFbox620, Os_F0358, OsFBDUF58, FBDUF58	_	F-box protein 620, F-box-type E3 ubiquitin ligase FBDUF58			11	LOC_Os11g38140. Os_F0358 in Hua et al. 2011.		Os11g0593700	LOC_Os11g38140.1						
17382	_	OsFbox621, Os_F0621, OsFBDUF59, FBDUF59	_	F-box protein 621, F-box-type E3 ubiquitin ligase FBDUF59			11	LOC_Os11g38180. Os_F0621 in Hua et al. 2011.		Os11g0594400	LOC_Os11g38180.1						
17383	_	OsFbox622, Os_F0499, OsFBDUF60, FBDUF60	_	F-box protein 622, F-box-type E3 ubiquitin ligase FBDUF60			11	LOC_Os11g38200. Os_F0499 in Hua et al. 2011.		Os11g0594600	LOC_Os11g38200.1						
17384	_	OsFbox623, Os_F0502, OsFBDUF61, FBDUF61	_	F-box protein 623, F-box-type E3 ubiquitin ligase FBDUF61			11	LOC_Os11g38230. Os_F0502 in Hua et al. 2011.		Os11g0594900	LOC_Os11g38230.1						
17385	_	OsFbox624, Os_F0226, OsFBDUF62, FBDUF62	_	F-box protein 624, F-box-type E3 ubiquitin ligase FBDUF62			11	LOC_Os11g38500. Os_F0226 in Hua et al. 2011.		Os11g0598000	LOC_Os11g38500.1						
17386	_	OsFbox625, Os_F0458	_	F-box protein 625			11	LOC_Os11g39559 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0458 in Hua et al. 2011.									
17387	_	OsFbox626, OsFBDUF64, FBDUF64	_	F-box protein 626, F-box-type E3 ubiquitin ligase FBDUF64			11	LOC_Os11g39609. 		Os11g0610240	LOC_Os11g39609.1						
17388	_	OsFbox627, Os_F0089, OsFBX427, FBX427	_	F-box protein 627, F-box-type E3 ubiquitin ligase X427			11	LOC_Os11g41560. Os_F0089 in Hua et al. 2011.		Os11g0633800	LOC_Os11g41560.1						
17389	_	OsFbox628, Os_F0028	_	F-box protein 628			11	LOC_Os11g41570. Os_F0028 in Hua et al. 2011.			LOC_Os11g41570						
17390	_	OsFbox629, Os_F0564, OsFBX429, FBX429	_	F-box protein 629, F-box-type E3 ubiquitin ligase X429			11	LOC_Os11g41860. Os_F0564 in Hua et al. 2011.		Os11g0637300	LOC_Os11g41860.1, LOC_Os11g41860.2						
17391	_	OsFbox630, Os_F0318, OsFBX430, FBX430	_	F-box protein 630, F-box-type E3 ubiquitin ligase X430			11	LOC_Os11g42230. Os_F0318 in Hua et al. 2011.		Os11g0641900	LOC_Os11g42230.1						
17392	_	OsFbox631, Os_F0064, OsFBX431, FBX431	_	F-box protein 631, F-box-type E3 ubiquitin ligase X431			11	LOC_Os11g42240. Os_F0064 in Hua et al. 2011.		Os11g0642000	LOC_Os11g42240.1						
17393	_	OsFbox632, Os_F0391, OsFBX432, FBX432	_	F-box protein 632, F-box-type E3 ubiquitin ligase X432			11	LOC_Os11g42270. Os_F0391 in Hua et al. 2011.		Os11g0642100	LOC_Os11g42270.1						
17394	_	OsFbox633, Os_F0413, OsFBX433, FBX433	_	F-box protein 633, F-box-type E3 ubiquitin ligase X433			11	LOC_Os11g42280. Os_F0413 in Hua et al. 2011.		Os11g0642300	LOC_Os11g42280.1						
17395	_	OsFbox634, Os_F0372, OsFBX434, FBX434	_	F-box protein 634, F-box-type E3 ubiquitin ligase X434			11	LOC_Os11g42300. Os_F0372 in Hua et al. 2011.		Os11g0642500	LOC_Os11g42300.1						
17396	_	OsFbox635, Os_F0310, OsFBL58, FBL58	_	F-box protein 635, F-box-type E3 ubiquitin ligase L58			11	LOC_Os11g42310. Os_F0310 in Hua et al. 2011.		Os11g0642600	LOC_Os11g42310.1						
17397	_	OsFbox636, Fbox636, Os_F0774, OsFBL63, FBL63	_	F-box protein 636, F-box-type E3 ubiquitin ligase L63			12	Os_F0774 in Hua et al. 2011. OsSUF4 target gene (Liu et al. 2019).		Os12g0108500	LOC_Os12g01760.1						
17398	_	OsFbox637, Os_F0061, OsFBX435, FBX435	_	F-box protein 637, F-box-type E3 ubiquitin ligase X435			12	LOC_Os12g03390. Os_F0061 in Hua et al. 2011.		Os12g0127400	LOC_Os12g03390.1						
17399	_	OsFbox638, Os_F0021, OsFBX436, FBX436	_	F-box protein 638, F-box-type E3 ubiquitin ligase X436			12	LOC_Os12g03440. Os_F0021 in Hua et al. 2011.		Os12g0128000	LOC_Os12g03440.1						
17400	_	OsFbox639, Os_F0382, OsFBX437, FBX437	_	F-box protein 639, F-box-type E3 ubiquitin ligase X437			12	LOC_Os12g03594. Os_F0382 in Hua et al. 2011.		Os12g0129700	LOC_Os12g03594.1						
17401	_	OsFbox640, Fbox640, Os_F0395, OsFBX438, FBX438, OsFBX438, FBX438	_	F-box protein 640, F-box-type E3 ubiquitin ligase X438			12	Os_F0395 in Hua et al. 2011. OsFBX438 in Prathi et al. 2021.		Os12g0131400	LOC_Os12g03740.1						
17402	_	OsFbox641, Os_F0319, OsFBO23, FBO23	_	F-box protein 641, F-box-type E3 ubiquitin ligase O23			12	LOC_Os12g04130. Os_F0319 in Hua et al. 2011.		Os12g0135200	LOC_Os12g04130.1						
17403	_	OsFbox642, Os_F0213, OsFBO24, FBO24	_	F-box protein 642, F-box-type E3 ubiquitin ligase O24			12	LOC_Os12g05609. Os_F0213 in Hua et al. 2011.		Os12g0152200	LOC_Os12g05609.1						
17404	_	OsFbox643, OsFBX481, FBX481	_	F-box protein 643, F-box-type E3 ubiquitin ligase X481			12	LOC_Os12g05709. 		Os12g0153400	LOC_Os12g05709.1						
17405	_	OsFbox644, Os_F0725, OsFBX439, FBX439	_	F-box protein 644, F-box-type E3 ubiquitin ligase X439			12	LOC_Os12g06030. Os_F0725 in Hua et al. 2011.		Os12g0156500	LOC_Os12g06030.1						
17406	_	OsFbox646, Os_F0134, OsFBX440, FBX440	_	F-box protein 646, F-box-type E3 ubiquitin ligase X440			12	LOC_Os12g06740. Os_F0134 in Hua et al. 2011.		Os12g0164300	LOC_Os12g06740.1, LOC_Os12g06740.2						
17407	_	OsFbox647, Os_F0466, OsFBX441, FBX441	_	F-box protein 647, F-box-type E3 ubiquitin ligase X441			12	LOC_Os12g27750. Os_F0466 in Hua et al. 2011.		Os12g0463500	LOC_Os12g27750.1						
17408	_	OsFbox648, Os_F0414	_	F-box protein 648			12	LOC_Os12g27760. Os_F0414 in Hua et al. 2011.			LOC_Os12g27760						
17409	_	OsFbox649, Os_F0410, OsFBX443, FBX443	_	F-box protein 649, F-box-type E3 ubiquitin ligase X443			12	LOC_Os12g27790. Os_F0410 in Hua et al. 2011.		Os12g0463700	LOC_Os12g27790.1						
17410	_	OsFbox650, Os_F0568, OsFBX444, FBX444	_	F-box protein 650, F-box-type E3 ubiquitin ligase X444			12	LOC_Os12g27810. Os_F0568 in Hua et al. 2011.		Os12g0464300	LOC_Os12g27810.1						
17411	_	OsFbox651, Os_F0018, OsFBA4, FBA4	_	F-box protein 651, F-box-type E3 ubiquitin ligase A4			12	LOC_Os12g30920. Os_F0018 in Hua et al. 2011.		Os12g0492900	LOC_Os12g30920.1						
17412	_	OsFbox652, Os_F0284, OsFBX445, FBX445	_	F-box protein 652, F-box-type E3 ubiquitin ligase X445			12	LOC_Os12g30940. Os_F0284 in Hua et al. 2011.		Os12g0493050	LOC_Os12g30940.1						
17413	_	OsFbox653, Os_F0172	_	F-box protein 653			12	LOC_Os12g30970 (not found in MSU Rice Genome Annotation Project Release 7 data). Os_F0172 in Hua et al. 2011.									
17414	_	OsFbox654, Os_F0092, OsFBX447, FBX447	_	F-box protein 654, F-box-type E3 ubiquitin ligase X447			12	LOC_Os12g30990. Os_F0092 in Hua et al. 2011.		Os12g0493732	LOC_Os12g30990.1						
17415	_	OsFbox655, Os_F0116, OsFBD15, FBD15	_	F-box protein 655, F-box-type E3 ubiquitin ligase D15			12	LOC_Os12g31340. Os_F0116 in Hua et al. 2011.		Os12g0496700	LOC_Os12g31340.1						
17416	_	OsFbox656, OsFBX448, FBX448	_	F-box protein 656, F-box-type E3 ubiquitin ligase X448			12	LOC_Os12g32630. 		Os12g0511000	LOC_Os12g32630.1, LOC_Os12g32630.2						
17417	_	OsFbox657, Os_F0500, OsFBL59, FBL59	_	F-box protein 657, F-box-type E3 ubiquitin ligase L59			12	LOC_Os12g33210. Os_F0500 in Hua et al. 2011.		Os12g0516900	LOC_Os12g33210.1						
17418	_	OsFbox658, Os_F0589, OsFBL60, FBL60	_	F-box protein 658, F-box-type E3 ubiquitin ligase L60			12	LOC_Os12g33230. Os_F0589 in Hua et al. 2011.		Os12g0517100	LOC_Os12g33230.1						
17419	_	OsFbox659, Os_F0424, OsFBX449, FBX449	_	F-box protein 659, F-box-type E3 ubiquitin ligase X449			12	LOC_Os12g33830. Os_F0424 in Hua et al. 2011.		Os12g0522000	LOC_Os12g33830.1						
17420	_	OsFbox660, Os_F0569, OsFBX450, FBX450	_	F-box protein 660, F-box-type E3 ubiquitin ligase X450			12	LOC_Os12g34200. Os_F0569 in Hua et al. 2011.		Os12g0526400	LOC_Os12g34200.1						
17421	_	OsFbox661, Os_F0665, OsFBL61, FBL61	_	F-box protein 661, F-box-type E3 ubiquitin ligase L61			12	LOC_Os12g34220. Os_F0665 in Hua et al. 2011.		Os12g0526600	LOC_Os12g34220.1						
17422	_	OsFbox662, Os_F0567, OsFBX451, FBX451	_	F-box protein 662, F-box-type E3 ubiquitin ligase X451			12	LOC_Os12g34240. Os_F0567 in Hua et al. 2011.		Os12g0526800	LOC_Os12g34240.1						
17423	_	OsFbox663, Os_F0276, OsFBX452, FBX452	_	F-box protein 663, F-box-type E3 ubiquitin ligase X452			12	LOC_Os12g34270. Os_F0276 in Hua et al. 2011.		Os12g0527100	LOC_Os12g34270.1						
17424	_	OsFbox664, Os_F0592, OsFBX453, FBX453	_	F-box protein 664, F-box-type E3 ubiquitin ligase X453			12	LOC_Os12g34290. Os_F0592 in Hua et al. 2011.		Os12g0527400	LOC_Os12g34290.1						
17425	_	OsFbox665, Os_F0555, OsFBX454, FBX454	_	F-box protein 665, F-box-type E3 ubiquitin ligase X454			12	LOC_Os12g34300. Os_F0555 in Hua et al. 2011.		Os12g0527500	LOC_Os12g34300.1						
17426	_	OsFbox666, Os_F0411, OsFBX455, FBX455	_	F-box protein 666, F-box-type E3 ubiquitin ligase X455			12	LOC_Os12g34310. Os_F0411 in Hua et al. 2011.		Os12g0527600	LOC_Os12g34310.1						
17427	_	OsFbox667, Os_F0594, OsFBD16, FBD16	_	F-box protein 667, F-box-type E3 ubiquitin ligase D16			12	LOC_Os12g37110. Os_F0594 in Hua et al. 2011.		Os12g0557900	LOC_Os12g37110.1						
17428	_	OsFbox668, Os_F0389	_	F-box protein 668			12	LOC_Os12g37130. Os_F0389 in Hua et al. 2011.			LOC_Os12g37130						
17429	_	OsFbox669, Os_F0383, OsFBX456, FBX456	_	F-box protein 669, F-box-type E3 ubiquitin ligase X456			12	LOC_Os12g38090. Os_F0383 in Hua et al. 2011.		Os12g0568600	LOC_Os12g38090.1						
17430	_	OsFbox670, Os_F0419, OsFBDUF66, FBDUF66	_	F-box protein 670, F-box-type E3 ubiquitin ligase FBDUF66			12	LOC_Os12g39520. Os_F0419 in Hua et al. 2011.		Os12g0585300	LOC_Os12g39520.1						
17431	_	OsFbox671, Os_F0524, OsFBX457, FBX457	_	F-box protein 671, F-box-type E3 ubiquitin ligase X457			12	LOC_Os12g40140. Os_F0524 in Hua et al. 2011.		Os12g0592500	LOC_Os12g40140.1						
17432	_	OsFbox672, Os_F0707, OsFBX458, FBX458, OsFBX459, FBX459	_	F-box protein 672, F-box-type E3 ubiquitin ligase X458, F-box-type E3 ubiquitin ligase X459			12	LOC_Os12g40320. Os_F0707 in Hua et al. 2011.		Os12g0594700	LOC_Os12g40310.1, LOC_Os12g40320.1						
17433	_	OsFbox673, Os_F0735, OsFBX460, FBX460	_	F-box protein 673, F-box-type E3 ubiquitin ligase X460			12	LOC_Os12g40360. Os_F0735 in Hua et al. 2011.		Os12g0595300	LOC_Os12g40360.1						
17434	_	OsFbox674, Os_F0164, OsFBX462, FBX462	_	F-box protein 674, F-box-type E3 ubiquitin ligase X462			12	LOC_Os12g41300. Os_F0164 in Hua et al. 2011.		Os12g0606200	LOC_Os12g41300.1						
17435	_	OsFbox675, Os_F0744	_	F-box protein 675			12	LOC_Os12g41450. Os_F0744 in Hua et al. 2011.		Os12g0607800	LOC_Os12g41450.1						
17436	_	OsFbox676, Os_F0269, OsFBX463, FBX463	_	F-box protein 676, F-box-type E3 ubiquitin ligase X463			12	LOC_Os12g41630. Os_F0269 in Hua et al. 2011.		Os12g0609900	LOC_Os12g41630.1						
17437	_	OsFbox677, Os_F0195, OsFBX464, FBX464	_	F-box protein 677, F-box-type E3 ubiquitin ligase X464			12	LOC_Os12g42340. Os_F0195 in Hua et al. 2011.		Os12g0618150	LOC_Os12g42340.1						
17438	_	OsFbox678, Os_F0417	_	F-box protein 678			12	LOC_Os12g43770. Os_F0417 in Hua et al. 2011.			LOC_Os12g43770						
17439	_	Os_F0739, OsFBX2, OsFBX2, FBX2	_	F-box-type E3 ubiquitin ligase X2			1	F-box protein. LOC_Os01g05890. OsFBX2 in TIGR rice genome annotation.		Os01g0152200	LOC_Os01g05890.1						
17440	_	Os_F0780, OsFBX9, OsFBX9, FBX9	_	F-box-type E3 ubiquitin ligase X9			1	F-box protein. LOC_Os01g32640. OsFBX9 in TIGR rice genome annotation.		Os01g0509900	LOC_Os01g32640.1						
17441	_	Os_F0653, OsFBDUF5, FBDUF5	_	F-box-type E3 ubiquitin ligase FBDUF5			1	F-box protein. LOC_Os01g48250. 		Os01g0673300	LOC_Os01g48250.1						
17442	_	Os_F0138, OsFBX59, FBX59	_	F-box-type E3 ubiquitin ligase X59			2	F-box protein. LOC_Os02g46140. Os_F0138 in Hua et al. 2011.		Os02g0686500	LOC_Os02g46140.1, LOC_Os02g46140.2						
17443	_	Os_F0699, OsFBX84, FBX84	_	F-box-type E3 ubiquitin ligase X84			3	F-box protein. LOC_Os03g22990. 		Os03g0353300	LOC_Os03g22990.1						
17444	_	Os_F0798	_				4	F-box protein. LOC_Os04g08470. 			LOC_Os04g08470						
17445	_	Os_F0607, OsFBL14, FBL14	_	F-box-type E3 ubiquitin ligase L14			4	F-box protein. LOC_Os04g30200. 		Os04g0370500	LOC_Os04g30200.1						
17446	_	Os_F0687, OsFBL15, FBL15	_	F-box-type E3 ubiquitin ligase L15			4	F-box protein. LOC_Os04g30210. 		Os04g0370600	LOC_Os04g30210.1						
17447	_	Os_F0796, OsFBO3, FBO3	_	F-box-type E3 ubiquitin ligase O3			4	F-box protein. LOC_Os04g31610. 		Os04g0385600	LOC_Os04g31610.1						
17448	_	Os_F0756, OsFBO17, FBO17	_	F-box-type E3 ubiquitin ligase O17			4	F-box protein. LOC_Os04g40030. 		Os04g0476000	LOC_Os04g40030.1						
17449	_	Os_F0659, OsFBDUF26, FBDUF26	_	F-box-type E3 ubiquitin ligase FBDUF26			5	F-box protein. LOC_Os05g46050. 		Os05g0537700	LOC_Os05g46050.1						
17450	_	Os_F0344, OsFBL31, FBL31	_	F-box-type E3 ubiquitin ligase L31			6	F-box protein. LOC_Os06g50280. 		Os06g0716467	LOC_Os06g50250.1, LOC_Os06g50280.1						
17451	_	OsFBX219, FBX219	_	F-box-type E3 ubiquitin ligase X219			7	F-box protein. LOC_Os07g09110. 		Os07g0189400	LOC_Os07g09110.1						
17452	_	Os_F0785, OsEnS-103, OsFBX228, FBX228	_	endosperm-specific gene 103, F-box-type E3 ubiquitin ligase X228			7	F-box protein. LOC_Os07g13830. 		Os07g0242000	LOC_Os07g13830.1						
17453	_	OsFBX240, FBX240	_	F-box-type E3 ubiquitin ligase X240			7	F-box protein. LOC_Os07g35130. 		Os07g0535700	LOC_Os07g35130.1						
17454	_	Os_F0669	_				7	F-box protein. LOC_Os07g36360. 			LOC_Os07g36360						
17455	_	Os_F0733, OsFBDUF42, FBDUF42	_	F-box-type E3 ubiquitin ligase FBDUF42			8	F-box protein. LOC_Os08g06710. 		Os08g0164100	LOC_Os08g06710.1						
17456	_	Os_F0671, OsFBDUF43, FBDUF43	_	F-box-type E3 ubiquitin ligase FBDUF43			8	F-box protein. LOC_Os08g06780. 		Os08g0164600	LOC_Os08g06780.1						
17457	_	OsMADS69, MADS69	_	MADS-box transcription factor 69			8	F-box protein. OsMADS69 in Hu et al. 2021.		Os08g0299600	LOC_Os08g20440.1, LOC_Os08g20440.2						
17458	_	Os_F0451, OsFBX286, FBX286	_	F-box-type E3 ubiquitin ligase X286			8	F-box protein. LOC_Os08g24190. 		Os08g0330900	LOC_Os08g24190.1						
17459	_	Os_F0695, OsFBDUF45, FBDUF45	_	F-box-type E3 ubiquitin ligase FBDUF45			8	F-box protein. LOC_Os08g33010. 		Os08g0426100	LOC_Os08g33010.1						
17460	_		_				9	F-box protein. LOC_Os09g21800 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17461	_	OsFBX366, FBX366	_	F-box-type E3 ubiquitin ligase X366			10	F-box protein. LOC_Os10g05000. 		Os10g0139500	LOC_Os10g05000.1						
17462	_	Os_F0794, OsFBDUF48, FBDUF48, PEG3, OsFBDUF48, FBDUF48	_	paternally expressed gene 3, F-box-type E3 ubiquitin ligase FBDUF48			10	F-box protein. ROS1a Target gene. a gene in rice zygotes with paternal allele-dependent expression.	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Embryo,  Seed - Morphological traits	Os10g0519800	LOC_Os10g37540.1					TO:0000064 - embryo related trait, TO:0000149 - seed width, TO:0000304 - seed thickness, TO:0000382 - 1000-seed weight, TO:0000696 - starch content	PO:0009089 - endosperm 
17463	_	Os_F0720, FBL55, OsFBL55, OsAFB3, AFB3, OsFBL55, FBL55	_	F-Box domain and LRR-containing protein 55, Auxin F-box protein 3, Auxin-signaling F-Box 3, F-box-type E3 ubiquitin ligase L55		Osafb3, afb3	11	F-box protein. Q2R3K5. transport inhibitor response 1 (TIR1)-like protein.	 Tolerance and resistance - Disease resistance	Os11g0515500	LOC_Os11g31620.1				GO:0050832 - defense response to fungus, GO:0019005 - SCF ubiquitin ligase complex, GO:0000822 - inositol hexakisphosphate binding, GO:0005634 - nucleus, GO:0016567 - protein ubiquitination, GO:0009734 - auxin mediated signaling pathway, GO:0010011 - auxin binding	TO:0000255 - sheath blight disease resistance	
17464	_	Os_F0247, OsFBO6, FBO6	_	F-box-type E3 ubiquitin ligase O6			11	F-box protein. LOC_Os11g36790.		Os11g0576400	LOC_Os11g36790.1, LOC_Os11g36800.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0016567 - protein ubiquitination, GO:0010011 - auxin binding, GO:0009734 - auxin mediated signaling pathway, GO:0000822 - inositol hexakisphosphate binding, GO:0005634 - nucleus		
17465	_	Os_F0732	_				12	F-box protein. LOC_Os12g40310.		Os12g0594700	LOC_Os12g40310.1, LOC_Os12g40320.1				GO:0000822 - inositol hexakisphosphate binding, GO:0009734 - auxin mediated signaling pathway, GO:0010011 - auxin binding, GO:0016567 - protein ubiquitination, GO:0019005 - SCF ubiquitin ligase complex, GO:0005634 - nucleus		
17466	_	Os_F0668, OsFBX504, FBX504	_	F-box-type E3 ubiquitin ligase X504			1	F-box protein.		Os01g0156500/Os01g0156600	LOC_Os01g06360.1						
17467	_	Os_F0651	_				1	F-box protein. LOC_Os01g07170.		Os01g0165800	LOC_Os01g07170.1						
17468	ZYGO1	Os_F0777, OsZYGO1	ZYGOTENE 1	ZYGOTENE1		zygo1, zygo1-1, zygo1-2, zygo1-3, zygo1-4	1	F-box protein. GO:0035825: homologous recombination. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0219200	LOC_Os01g11990.1				GO:0060629 - regulation of homologous chromosome segregation, GO:0045141 - meiotic telomere clustering		
17469	_	Os_F0797	_				1	F-box protein. LOC_Os01g14100.		Os01g0243200	LOC_Os01g14100.1, LOC_Os01g14100.2, LOC_Os01g14100.3						
17470	_	Os_F0781	_				1	F-box protein. LOC_Os01g27730.		Os01g0375000	LOC_Os01g27730.1				GO:0010077 - maintenance of inflorescence meristem identity, GO:0009506 - plasmodesma, GO:0048444 - floral organ morphogenesis, GO:0006184 - GTP catabolic process, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0042254 - ribosome biogenesis, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005730 - nucleolus		
17471	_	Os_F0712	_				1	F-box protein. LOC_Os01g33650.		Os01g0520260	LOC_Os01g33650.1						
17472	_	Os_F0791	_				1	F-box protein. LOC_Os01g39690.		Os01g0578800	LOC_Os01g39690.1						
17473	_	Os_F0727	_				1	F-box protein. LOC_Os01g40120.		Os01g0583300	LOC_Os01g40120.1						
17474	_	Os_F0640	_				1	F-box protein. LOC_Os01g47130.		Os01g0660700	LOC_Os01g47130.1						
17475	_	Os_F0762	_				1	F-box protein.		Os01g0751200/Os01g0751250	LOC_Os01g54770.1						
17476	_	Os_F0743	_				1	F-box protein. LOC_Os01g58670.		Os01g0800900	LOC_Os01g58670.1						
17477	_	Os_F0745	_				2	F-box protein. LOC_Os02g07470 (not found in MSU Rice Genome Annotation Project Release 7 data).									
17478	_	Os_F0478	_				2	F-box protein. LOC_Os02g18614.		Os02g0287800	LOC_Os02g18614.1, LOC_Os02g18620.1						
17479	_	Os_F0610	_				2	F-box protein. LOC_Os02g18720.		Os02g0288925	LOC_Os02g18720.1						
17480	_	Os_F0647	_				2	F-box protein. LOC_Os02g19410.			LOC_Os02g19410						
17481	_	Os_F0770	_				2	F-box protein. LOC_Os02g21220.		Os02g0317100	LOC_Os02g21220.1						
17482	_	Os_F0768	_				2	F-box protein. LOC_Os02g21310.		Os02g0318200	LOC_Os02g21310.1						
17483	_	Os_F0751	_				2	F-box protein. LOC_Os02g44104.		Os02g0658500	LOC_Os02g44104.1, LOC_Os02g44104.2, LOC_Os02g44104.3						
17484	_	Os_F0676	_				2	F-box protein. LOC_Os02g45000.		Os02g0671200	LOC_Os02g45000.1						
17485	_	Os_F0734, OsFBX485, FBX485	_	F-box-type E3 ubiquitin ligase X485			1	F-box protein. LOC_Os01g27680.		Os01g0374400	LOC_Os01g27680.1						
17486	_	Os_F0571, OsFBX494, FBX494	_	F-box-type E3 ubiquitin ligase X494			1	F-box protein. LOC_Os01g34630.		Os01g0530500	LOC_Os01g34630.1						
17487	_	Os_F0737	_				1	F-box protein. LOC_Os01g40240.			LOC_Os01g40240						
17488	_	Os_F0670	_				1	F-box protein. LOC_Os01g50840.		Os01g0704300	LOC_Os01g50840.1						
17489	_	Os_F0738	_				2	F-box protein. LOC_Os02g44750.			LOC_Os02g44750						
17490	_	Os_F0767, OsTIR1, TIR1, OsAFB4, AFB4, OsFBL71, FBL71	_	AUXIN SIGNALING F-BOX 4, Auxin F-box protein 4, F-box-type E3 ubiquitin ligase L71		Osafb4, afb4	2	F-box protein.	 Tolerance and resistance - Stress tolerance	Os02g0759700	LOC_Os02g52230.1				GO:0009734 - auxin mediated signaling pathway, GO:0009635 - response to herbicide	TO:0000058 - herbicide sensitivity	
17491	_	Os_F0752, OsFBL64, FBL64	_	F-box-type E3 ubiquitin ligase L64			2	F-box protein. LOC_Os02g55550.		Os02g0798900	LOC_Os02g55550.1						
17492	_	Os_F0404, OsFBX500, FBX500	_	F-box-type E3 ubiquitin ligase X500			3	F-box protein. LOC_Os03g06100.		Os03g0157000	LOC_Os03g06100.1						
17493	_	Os_F0726, OsFBX487, FBX487	_	F-box-type E3 ubiquitin ligase X487			4	F-box protein. LOC_Os04g40920.		Os04g0486300	LOC_Os04g40920.1, LOC_Os04g40920.2						
17494	_	Os_F0617, OsFBX483, FBX483	_	F-box-type E3 ubiquitin ligase X483			5	F-box protein. LOC_Os05g02570.		Os05g0116600	LOC_Os05g02570.1						
17495	_	Os_F0029, OsFBX501, FBX501	_	F-box-type E3 ubiquitin ligase X501			5	F-box protein. LOC_Os05g23810.		Os05g0303900	LOC_Os05g23810.1						
17496	_	Os_F0724	_				5	F-box protein. LOC_Os05g40430.			LOC_Os05g40430						
17497	_	Os_F0729	_				5	F-box protein. LOC_Os05g40450.			LOC_Os05g40450						
17498	_	Os_F0708	_				5	F-box protein. LOC_Os05g46090.		Os05g0538250	LOC_Os05g46090.1						
17499	_	Os_F0297, OsFBX495, FBX495	_	F-box-type E3 ubiquitin ligase X495			5	F-box protein. LOC_Os05g49540.		Os05g0570700	LOC_Os05g49540.1						
17500	_	Os_F0007, OsFBX498, FBX498	_	F-box-type E3 ubiquitin ligase X498			6	F-box protein.		Os06g0170750/Os06g0170766	LOC_Os06g07390.1						
17501	_	Os_F0283	_				7	F-box protein. LOC_Os07g17570.			LOC_Os07g17570						
17502	_	Os_F0782	_				7	F-box protein. LOC_Os07g34620.		Os07g0530400	LOC_Os07g34620.1						
17503	_	Os_F0741	_				7	F-box protein. LOC_Os07g39000.		Os07g0578125	LOC_Os07g39000.1						
17504	_	Os_F0240, OsFBX468, FBX468	_	F-box-type E3 ubiquitin ligase X468			2	F-box protein. LOC_Os02g57965.		Os02g0826050	LOC_Os02g57965.1						
17505	SHPR	Os_F0716, OsSHPR	SHORT PRIMARY ROOT			shpr	3	F-box protein. an F-box family E3 ubiquitin ligase. 	 Vegetative organ - Root	Os03g0116800	LOC_Os03g02560.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0051302 - regulation of cell division, GO:0005634 - nucleus, GO:0010265 - SCF complex assembly, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0000209 - protein polyubiquitination, GO:0042127 - regulation of cell proliferation, GO:0010078 - maintenance of root meristem identity, GO:0010082 - regulation of root meristem growth, GO:0080022 - primary root development	TO:0000656 - root development trait, TO:0000227 - root length, TO:0002692 - root meristem development	PO:0007520 - root development stage , PO:0007527 - 2 root meristem formation stage 
17506	_	Os_F0701, OsAFB6, AFB6, OsAFB5, AFB5, OsFBL70, FBL70	_	Auxin-signaling F-Box 6, Auxin F-box protein 5, Auxin-signaling F-Box 5, F-box-type E3 ubiquitin ligase L70		Osafb5	3	F-box protein. OsAFB5 in Guo et al. 2020. GO:0038198: auxin receptor activity.	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching,  Seed - Morphological traits,  Reproductive organ - Heading date	Os03g0187500	LOC_Os03g08850.1				GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0010081 - regulation of inflorescence meristem growth, GO:0007623 - circadian rhythm, GO:0048579 - negative regulation of long-day photoperiodism, flowering	TO:0000547 - primary branch number, TO:0000396 - grain yield, TO:0006032 - panicle size, TO:0002660 - cytokinin content, TO:0002672 - auxin content, TO:0000137 - days to heading, TO:0000397 - grain size, TO:0000227 - root length, TO:0000557 - secondary branch number, TO:0000040 - panicle length, TO:0000456 - spikelet number, TO:0000346 - tiller number	PO:0009049 - inflorescence , PO:0020032 - plumule , PO:0020148 - shoot apical meristem , PO:0020003 - plant ovule , PO:0009073 - stigma 
17507	_	Os_F0559	_				3	F-box protein. LOC_Os03g41290.		Os03g0609100	LOC_Os03g41290.1						
17508	_	Os_F0792	_				3	F-box protein. LOC_Os03g42730.			LOC_Os03g42730						
17509	_	Os_F0746	_				3	F-box protein. LOC_Os03g57830.		Os03g0792300	LOC_Os03g57830.1						
17510	_	Os_F0786	_				4	F-box protein. LOC_Os04g08160.			LOC_Os04g08160						
17511	_	Os_F0696	_				5	F-box protein. LOC_Os05g40570.			LOC_Os05g40570						
17512	_	Os_F0787	_				5	F-box protein. LOC_Os05g40590.			LOC_Os05g40590						
17513	_	Os_F0757	_				5	F-box protein. LOC_Os05g41490. Similar to Circadian clock coupling factor ZGT.	 Tolerance and resistance - Stress tolerance	Os05g0494600	LOC_Os05g41490.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0010029 - regulation of seed germination, GO:0010228 - vegetative to reproductive phase transition, GO:0005634 - nucleus	TO:0000276 - drought tolerance	
17514	_	Os_F0766	_				5	F-box protein. LOC_Os05g45470.		Os05g0531300	LOC_Os05g45470.1						
17515	_	Os_F0697	_				5	F-box protein. LOC_Os05g49510.		Os05g0570350	LOC_Os05g49510.1						
17516	_	Os_F0663	_				6	F-box protein. LOC_Os06g47120.		Os06g0685200	LOC_Os06g47120.1						
17517	_	Os_F0748	_				7	F-box protein. LOC_Os07g18630.		Os07g0286400	LOC_Os07g18630.1						
17518	_	Os_F0764	_				7	F-box protein. LOC_Os07g40160.		Os07g0591300	LOC_Os07g40160.1						
17519	_	Os_F0793	_				7	F-box protein. LOC_Os07g40710.		Os07g0598200	LOC_Os07g40710.1, LOC_Os07g40710.2						
17520	_	Os_F0606	_				7	F-box protein. LOC_Os07g45010.		Os07g0644700	LOC_Os07g45010.1						
17521	_	Os_F0300, OsFBX477, FBX477	_	F-box-type E3 ubiquitin ligase X477			7	F-box protein. LOC_Os07g46555.		Os07g0659700	LOC_Os07g46555.1						
17522	_	Os_F0199, OsFBX478, FBX478	_	F-box-type E3 ubiquitin ligase X478			8	F-box protein. LOC_Os08g09715.		Os08g0197050	LOC_Os08g09715.1						
17523	_	Os_F0765	_				8	F-box protein. LOC_Os08g13360.		Os08g0230300	LOC_Os08g13360.1, LOC_Os08g13360.2						
17524	_	Os_F0586	_				8	F-box protein. LOC_Os08g25650.		Os08g0344700	LOC_Os08g25650.1						
17525	_	Os_F0795	_				8	F-box protein. LOC_Os08g31270.			LOC_Os08g31270						
17526	_	Os_F0790	_				8	F-box protein. LOC_Os08g36570.		Os08g0469500	LOC_Os08g36570.1						
17527	_	Os_F0779	_				8	F-box protein. LOC_Os08g39060.		Os08g0499900	LOC_Os08g39060.1, LOC_Os08g39060.2, LOC_Os08g39060.3						
17528	_	Os_F0709	_				9	F-box protein. LOC_Os09g06660.		Os09g0242000	LOC_Os09g06660.1						
17529	_	Os_F0736	_				9	F-box protein. LOC_Os09g15660.		Os09g0325500	LOC_Os09g15660.1						
17530	_	Os_F0715	_				9	F-box protein. LOC_Os09g22420.		Os09g0391600	LOC_Os09g22420.1						
17531	_	Os_F0740	_				9	F-box protein. LOC_Os09g32400.			LOC_Os09g32400						
17532	_	Os_F0710	_				9	F-box protein. LOC_Os09g32580.		Os09g0502600	LOC_Os09g32580.1						
17533	_	Os_F0789	_				9	F-box protein. LOC_Os09g32610.		Os09g0502900	LOC_Os09g32610.1						
17534	_	Os_F0601	_				9	F-box protein. LOC_Os09g37110.		Os09g0543300	LOC_Os09g37110.1						
17535	_	Os_F0661, OsFBX489, FBX489	_	F-box-type E3 ubiquitin ligase X489			7	F-box protein. LOC_Os07g47170.		Os07g0667700	LOC_Os07g47170.1						
17536	_	Os_F0662, OsFBX502, FBX502	_	F-box-type E3 ubiquitin ligase X502			8	F-box protein.		Os08g0272900/Os08g0272950	LOC_Os08g17130.1						
17537	_	Os_F0488, OsFBX496, FBX496	_	F-box-type E3 ubiquitin ligase X496			8	F-box protein. LOC_Os08g40640.		Os08g0518300	LOC_Os08g40640.1						
17538	_	Os_F0448, OsFBX499, FBX499	_	F-box-type E3 ubiquitin ligase X499			9	F-box protein. LOC_Os09g15460.		Os09g0323400	LOC_Os09g15460.1						
17539	_	Os_F0689	_				9	F-box protein. LOC_Os09g33620.		Os09g0510900	LOC_Os09g33620.1						
17540	_	Os_F0783, OsFBX505, FBX505	_	F-box-type E3 ubiquitin ligase X505			9	F-box protein. LOC_Os09g38900.		Os09g0562400	LOC_Os09g38900.1				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding		
17541	_	Os_F0581	_				10	F-box protein. LOC_Os10g03680 (not found in MSU Rice Genome Annotation Project Release 7 data).									
17542	_	Os_F0711, OsFBL69, FBL69	_	F-box-type E3 ubiquitin ligase L69			10	F-box protein. LOC_Os10g05800.		Os10g0148800	LOC_Os10g05800.1, LOC_Os10g05800.2						
17543	_	Os_F0772	_				10	F-box protein. LOC_Os10g41850.		Os10g0568000	LOC_Os10g41850.1						
17544	_	Os_F0627, OsFBX491, FBX491	_	F-box-type E3 ubiquitin ligase X491			11	F-box protein. LOC_Os11g05590.		Os11g0154200	LOC_Os11g05590.1						
17546	_	Os_F0723, OsFBL67, FBL67	_	F-box-type E3 ubiquitin ligase L67			11	F-box protein. LOC_Os11g42160.		Os11g0641200	LOC_Os11g42160.1						
17547	_	Os_F0684, OsFBX506, FBX506	_	F-box-type E3 ubiquitin ligase X506			12	F-box protein. LOC_Os12g34210.		Os12g0526500	LOC_Os12g34210.1						
17548	_	Os_F0742	_				10	F-box protein. LOC_Os10g03900.			LOC_Os10g03900						
17549	_	Os_F0753	_				10	F-box protein. LOC_Os10g07430.		Os10g0161700	LOC_Os10g07430.1						
17550	_	Os_F0664	_				10	F-box protein. LOC_Os10g24370.		Os10g0384600	LOC_Os10g24370.1						
17551	_	Os_F0778	_				10	F-box protein. LOC_Os10g37580.		Os10g0520200	LOC_Os10g37580.1						
17552	_	Os_F0771	_				10	F-box protein. LOC_Os10g37600.		Os10g0520400	LOC_Os10g37600.1						
17553	_	Os_F0031	_				11	F-box protein. LOC_Os11g09395.			LOC_Os11g09395						
17554	_	Os_F0079, OsFBX399, FBX399	_	F-box-type E3 ubiquitin ligase X399			11	F-box protein. LOC_Os11g09418.		Os11g0200600	LOC_Os11g09418.1						
17555	_	Os_F0390, OsFBX400, FBX400	_	F-box-type E3 ubiquitin ligase X400			11	F-box protein.		Os11g0200950/Os11g0201299	LOC_Os11g09474.1						
17556	_	Os_F0253, OsFBX402, FBX402	_	F-box-type E3 ubiquitin ligase X402			11	F-box protein. LOC_Os11g09478.		Os11g0201360	LOC_Os11g09478.1						
17557	_	Os_F0690, Fbox-12-pseuso	_	F-box family-12 pseudogene			11	LOC_Os11g10160. J11-12: japonica in Ammiraju et al. 2008. Os_F0690 in Hua et al. 2011.		Os11g0207800	LOC_Os11g10160.1						
17558	_	Os_F0761, Fbox-7	_	F-box family-7			11	LOC_Os11g10250. J11-7: japonica in Ammiraju et al. 2008. Os_F0761 in Hua et al. 2011.		Os11g0208600	LOC_Os11g10250.1						
17559	_	Os_F0257, Fbox-2	_	F-box family-2			11	LOC_Os11g10384 (not found in MSU Rice Genome Annotation Project Release 7 data). J11-2: japonica in Ammiraju et al. 2008. Os_F0257 in Hua et al. 2011.									
17560	_	Os_F0758	_				11	F-box protein. LOC_Os11g32360.		Os11g0526800	LOC_Os11g32360.1, LOC_Os11g32360.2						
17561	_	Os_F0718	_				11	F-box protein. LOC_Os11g38070.		Os11g0593100	LOC_Os11g38070.1						
17562	_	Os_F0650	_				11	F-box protein. LOC_Os11g47660.		Os11g0702800	LOC_Os11g47660.1						
17563	_	Os_F0686	_				12	F-box protein. LOC_Os12g31040.		Os12g0494500	LOC_Os12g31040.1						
17564	_	Os_F0691	_				12	F-box protein. LOC_Os12g33220.		Os12g0517000	LOC_Os12g33220.1						
17565	_	Os_F0700	_				12	F-box protein. LOC_Os12g34960.		Os12g0535000	LOC_Os12g34960.1						
17566	_	Os_F0763	_				12	F-box protein. LOC_Os12g37150.		Os12g0558366	LOC_Os12g37150.1						
17567	_	Os_F0799	_				12	F-box protein. LOC_Os12g39460.			LOC_Os12g39460						
17568	_	Os_F0680	_				12	F-box protein.		Os12g0607950/Os12g0608100	LOC_Os12g41460.1						
17569	_	Os_F0776	_				12	F-box protein. LOC_Os12g40350.		Os12g0595200	LOC_Os12g40350.1						
17570	_	Os_F0685	_				12	F-box protein. LOC_Os12g40860.		Os12g0601000	LOC_Os12g40860.1				GO:0009555 - pollen development, GO:0048316 - seed development, GO:0001673 - male germ cell nucleus, GO:0019005 - SCF ubiquitin ligase complex, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0009790 - embryonic development, GO:0055047 - generative cell mitosis		
17571	_	Os_F0769	_				12	F-box protein. LOC_Os12g42360.			LOC_Os12g42360						
17572	_		_				1	F-box protein. LOC_Os01g56730.		Os01g0774200	LOC_Os01g56730.1						
17573	_	OsFBL65, FBL65	_	F-box-type E3 ubiquitin ligase L65			1	F-box protein. LOC_Os01g65920.		Os01g0881900	LOC_Os01g65920.1, LOC_Os01g65920.2						
17574	_		_				2	F-box protein. LOC_Os02g05600.		Os02g0149500	LOC_Os02g05600.1						
17575	_		_				2	F-box protein. LOC_Os02g47490.		Os02g0703800	LOC_Os02g47490.1						
17576	_		_				2	F-box protein. LOC_Os02g57870.		Os02g0824900	LOC_Os02g57870.1, LOC_Os02g57870.2						
17577	_	OsIRL6	_	intracellular Ras-group-related LRR protein 6			2	F-box protein. LOC_Os02g58030. Q6K7R2.		Os02g0826600	LOC_Os02g58030.1						
17578	_		_				3	F-box protein. LOC_Os03g11880 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17579	_		_				3	F-box protein. LOC_Os03g25710. 		Os03g0374050	LOC_Os03g25710.1						
17580	_		_				3	F-box protein. LOC_Os03g36450 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17581	_		_				3	F-box protein. LOC_Os03g40410. 		Os03g0601100	LOC_Os03g40410.1, LOC_Os03g40410.2, LOC_Os03g40410.3						
17582	_		_				3	F-box protein. LOC_Os03g49690. 		Os03g0703800	LOC_Os03g49690.1						
17583	_		_				3	F-box protein. LOC_Os03g58760 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17584	_		_				4	F-box protein. LOC_Os04g47550. 		Os04g0563300	LOC_Os04g47550.1, LOC_Os04g47550.2						
17585	_		_				4	F-box protein. LOC_Os04g53520. 		Os04g0626700	LOC_Os04g53520.1						
17586	_		_				5	F-box protein. LOC_Os05g44580. 		Os05g0521400	LOC_Os05g44580.1						
17587	_		_				6	F-box protein. LOC_Os06g02050 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17588	_		_				6	F-box protein. LOC_Os06g04710. 		Os06g0139000	LOC_Os06g04710.1						
17589	_		_				6	F-box protein. LOC_Os06g07400. 		Os06g0170800	LOC_Os06g07400.1				GO:0004190 - aspartic-type endopeptidase activity		
17590	_		_				6	F-box protein. LOC_Os07g01460. 		Os07g0105200	LOC_Os07g01460.1				GO:0004190 - aspartic-type endopeptidase activity		
17591	_		_				7	F-box protein. LOC_Os07g09810 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17592	_		_				7	F-box protein. LOC_Os07g27490. 		Os07g0459400	LOC_Os07g27490.1, LOC_Os07g27490.2						
17593	_		_				7	F-box protein. LOC_Os07g45120. 			LOC_Os07g45120						
17594	RIP6	OsRIP6, OsRING78, RING78	RMD INTERACTING PROTEIN 6	RMD Interacting Protein 6, RING-type E3 ubiquitin ligase 78	RMD INTERACTING PROTEIN 6	rip6	7	F-box protein. SIAH-type E3 ligase. The sextuple rip1-6 mutant displayed dwarf height, wrinkled seeds, wider leaves, defective microfilaments and increased flag leaf angles (Chang et al. 2022).	 Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os07g0659800	LOC_Os07g46560.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding, GO:0007015 - actin filament organization, GO:0005737 - cytoplasm, GO:0007275 - multicellular organismal development, GO:0048364 - root development	TO:0002710 - root shape, TO:0000656 - root development trait, TO:0000207 - plant height, TO:0000718 - wrinkled seed, TO:0000370 - leaf width, TO:0000124 - flag leaf angle	PO:0007520 - root development stage 
17595	_		_				8	F-box protein. LOC_Os08g05350 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17597	_		_				8	F-box protein. LOC_Os08g19680. 		Os08g0293200	LOC_Os08g19680.1						
17598	_		_				8	F-box protein. LOC_Os08g20510 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17599	_		_				8	F-box protein. LOC_Os08g35950 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17600	_		_				9	F-box protein. LOC_Os09g02530. 		Os09g0113000	LOC_Os09g02530.1						
17601	_		_				9	F-box protein. LOC_Os09g17150 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17602	_		_				9	F-box protein. LOC_Os09g19720. 		Os09g0361300	LOC_Os09g19720.1						
17603	_		_				9	F-box protein. LOC_Os09g39180. 		Os09g0565200	LOC_Os09g39180.1				GO:0043489 - RNA stabilization, GO:0003676 - nucleic acid binding, GO:0019013 - viral nucleocapsid, GO:0008266 - poly(U) RNA binding, GO:0009941 - chloroplast envelope, GO:0045087 - innate immune response, GO:0009631 - cold acclimation, GO:0016553 - base conversion or substitution editing, GO:0000166 - nucleotide binding, GO:0030529 - ribonucleoprotein complex, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma		
17604	_		_				10	F-box protein. LOC_Os10g04650 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17605	_		_				10	F-box protein. LOC_Os10g38890. 		Os10g0532800	LOC_Os10g38890.1						
17606	_		_				10	F-box protein. LOC_Os10g41840 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17607	_		_				11	F-box protein. LOC_Os11g09400 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17608	_		_				11	F-box protein. LOC_Os11g10380 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17609	_		_				11	F-box protein. LOC_Os11g39560 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17610	_		_				11	F-box protein. LOC_Os11g39610 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17611	_		_				12	F-box protein. LOC_Os12g03600 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17612	_		_				12	F-box protein. LOC_Os12g05610 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17613	_		_				12	F-box protein. LOC_Os12g05710 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17614	_	OsFBX484, FBX484	_	F-box-type E3 ubiquitin ligase X484			12	F-box protein. LOC_Os12g30950. 		Os12g0493200	LOC_Os12g30950.1						
17615	_		_				12	F-box protein. LOC_Os12g37160. 		Os12g0558400	LOC_Os12g37160.1, LOC_Os12g37160.2, LOC_Os12g37160.3						
17616	_		_				12	F-box protein. LOC_Os12g42350 (not found in MSU Rice Genome Annotation Project Release 7 data). 									
17617	_	Fbox-14	_	F-box family-14			11	LOC_Os11g09960. J11-14: japonica in Ammiraju et al. 2008. 		Os11g0205800	LOC_Os11g09960.1						
17618	_	Fbox-9-pseudo, Os_F0394, OsFBX497, FBX497	_	F-box family-9 pseudogene, F-box-type E3 ubiquitin ligase X497			11	LOC_Os11g10230 + LOC_Os11g10220 pseudogene. J11-9: japonica in Ammiraju et al. 2008. 		Os11g0208300	LOC_Os11g10220.1, LOC_Os11g10230.1						
17619	_		_	DNA-directed RNA polymerase 40K polypeptide			3	D16028. 	 Other	Os03g0295400	LOC_Os03g18410.1				GO:0005730 - nucleolus, GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0006351 - transcription, DNA-dependent		
17620	_		_	G10 protein			12	D15758. P35682.		Os12g0149800	LOC_Os12g05410.1, LOC_Os12g05410.2				GO:0005634 - nucleus		
17621	_		_	General matrix processing protease			1	D23396.	 Biochemical character	Os01g0739000	LOC_Os01g53700.1				GO:0009507 - chloroplast, GO:0004222 - metalloendopeptidase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0005774 - vacuolar membrane, GO:0005750 - mitochondrial respiratory chain complex III, GO:0009651 - response to salt stress, GO:0005758 - mitochondrial intermembrane space, GO:0005759 - mitochondrial matrix, GO:0005741 - mitochondrial outer membrane		
17622	BGL14X	OsBGL14X	BETA-GLUCANASE 14X	"\"Glucan endo-1, 3-beta-glucosidase\", beta-glucanase 14X"	BETA-GLUCANASE 14X		1	D15500.	 Biochemical character	Os01g0860800	LOC_Os01g64170.5, LOC_Os01g64170.1, LOC_Os01g64170.2, LOC_Os01g64170.3, LOC_Os01g64170.4				GO:0046658 - anchored to plasma membrane, GO:0005975 - carbohydrate metabolic process, GO:0005634 - nucleus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
17623	_		_	Glycine cleavage system H protein			6	D15379.	 Biochemical character	Os06g0667600	LOC_Os06g45670.1				GO:0005960 - glycine cleavage complex, GO:0019464 - glycine decarboxylation via glycine cleavage system		
17624	_		_	Glycine-rich cell wall structural protein			10	D15464.		Os10g0451900	LOC_Os10g31440.1, LOC_Os10g31440.2						
17625	_	htpB	_	heat-shock protein 60			3	D16063.		Os03g0143400	LOC_Os03g04970.1				GO:0009570 - chloroplast stroma, GO:0009408 - response to heat, GO:0009941 - chloroplast envelope, GO:0042026 - protein refolding, GO:0005759 - mitochondrial matrix, GO:0046686 - response to cadmium ion, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0022626 - cytosolic ribosome, GO:0005507 - copper ion binding, GO:0005524 - ATP binding		
17626	MED37_1	OsMed37_1, Med37_1, OsHSP70, OsHSP70.1, HSP70.1	MEDIATOR 37_1	heat-shock protein 70, heat-shock protein cognate 70, Mediator 37_1	MEDIATOR 37_1		1	D15636, D22565.	 Tolerance and resistance - Stress tolerance	Os01g0840100	LOC_Os01g62290.2, LOC_Os01g62290.1				GO:0008414 - CDP-alcohol phosphotransferase activity, GO:0046686 - response to cadmium ion, GO:0005524 - ATP binding, GO:0006950 - response to stress	TO:0000188 - drought sensitivity	
17628	HMGB707	OsHMGB706	HIGH MOBILITY GROUP PROTEIN B706	high-mobility group protein	HIGH MOBILITY GROUP PROTEIN B706		2	D22537.		Os02g0670400	LOC_Os02g44930.1						
17629	_		_	Histone H2A			3	D16020. Q94E96. up-regulated after fertilization (Abiko et al. 2013).		Os03g0279200 	LOC_Os03g17100.1				GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0000786 - nucleosome, GO:0003677 - DNA binding		
17630	_		_	Histone H2A.hv1			3	D15845. Q84MP7.		Os03g0743400	LOC_Os03g53190.1, LOC_Os03g53190.2				GO:0005730 - nucleolus, GO:0044030 - regulation of DNA methylation, GO:0009909 - regulation of flower development, GO:0042742 - defense response to bacterium, GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding, GO:0010468 - regulation of gene expression, GO:0000786 - nucleosome, GO:0009908 - flower development, GO:0016048 - detection of temperature stimulus		
17631	_		_	Histone H3, Histone H3.3			6	D16068, D15959. Q0JCT1.		Os06g0130900 	LOC_Os06g04030.1				GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding, GO:0005515 - protein binding, GO:0000786 - nucleosome, GO:0005634 - nucleus		
17632	_		_	Histone H4			1	D15291.		Os01g0835900	LOC_Os01g61920.1				GO:0005886 - plasma membrane, GO:0006334 - nucleosome assembly, GO:0003677 - DNA binding, GO:0000786 - nucleosome, GO:0009507 - chloroplast, GO:0005829 - cytosol, GO:0005730 - nucleolus, GO:0009414 - response to water deprivation, GO:0009506 - plasmodesma, GO:0009579 - thylakoid, GO:0005774 - vacuolar membrane		
17633	_		_				5	D16073. Q0DKF0.		Os05g0169100	LOC_Os05g07700.1, LOC_Os05g07700.3, LOC_Os05g07700.4				GO:0009941 - chloroplast envelope, GO:0032502 - developmental process, GO:0006412 - translation, GO:0010224 - response to UV-B, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0016020 - membrane		
17634	_		_	Ribosomal protein S8			4	D23513, D15520.		Os04g0349500	LOC_Os04g28180.1				GO:0005730 - nucleolus, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0006414 - translational elongation, GO:0009506 - plasmodesma, GO:0003735 - structural constituent of ribosome, GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0022627 - cytosolic small ribosomal subunit, GO:0009507 - chloroplast		
17635	_		_				6	D15884.		Os06g0665000	LOC_Os06g45430.1				GO:0005886 - plasma membrane, GO:0015914 - phospholipid transport		
17636	_	OsRH2, RH2, eIF4A-3	_	initiation factor eIF-4A, RNA helices 2, Eukaryotic initiation factor 4A-3			1	D22665. Q5VNM3. LOC_Os01g45190. DEAD-box RNA helicase protein. homologous to eukaryotic initiation factor 4AIII (eIF4AIII). major eIF4AIII in rice.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Seed,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0639100	LOC_Os01g45190.1, LOC_Os01g45190.3				GO:0005737 - cytoplasm, GO:0035145 - exon-exon junction complex, GO:0016607 - nuclear speck, GO:0005524 - ATP binding, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0016020 - membrane, GO:0008026 - ATP-dependent helicase activity, GO:0048573 - photoperiodism, flowering, GO:0080050 - regulation of seed development, GO:0048653 - anther development, GO:0006397 - mRNA processing, GO:0005634 - nucleus, GO:0006364 - rRNA processing, GO:0005730 - nucleolus, GO:0009555 - pollen development, GO:0009790 - embryonic development, GO:0001666 - response to hypoxia, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0003723 - RNA binding	TO:0000180 - spikelet fertility, TO:0000166 - gibberellic acid sensitivity, TO:0000653 - seed development trait, TO:0000620 - embryo development trait, TO:0000145 - internode length, TO:0000137 - days to heading, TO:0000207 - plant height	PO:0001004 - anther development stage , PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0001007 - pollen development stage , PO:0001170 - seed development stage , PO:0007631 - plant embryo stage 
17637	_	eIF-5A-2	_	initiation factor eIF-5A, Eukaryotic translation initiation factor 5A-2			3	D15348. eIF-5A-2 in Yu et al 2017.	 Tolerance and resistance - Stress tolerance	Os03g0758800	LOC_Os03g55150.1, LOC_Os03g55150.4, LOC_Os03g55150.5, LOC_Os03g55150.6				GO:0010089 - xylem development, GO:0045905 - positive regulation of translational termination, GO:0009651 - response to salt stress, GO:0006452 - translational frameshifting, GO:0008612 - peptidyl-lysine modification to hypusine, GO:0003746 - translation elongation factor activity, GO:0003743 - translation initiation factor activity, GO:0043022 - ribosome binding, GO:0045901 - positive regulation of translational elongation	TO:0006001 - salt tolerance	
17638	_		_	Inorganic pyrophosphatase, sPPase, Soluble Inorganic Pyrophosphatase			4	D15686.	 Biochemical character	Os04g0687100	LOC_Os04g59040.3, LOC_Os04g59040.2, LOC_Os04g59040.1				GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0000287 - magnesium ion binding, GO:0004427 - inorganic diphosphatase activity, GO:0006796 - phosphate metabolic process		
17639	_		_	Laminin receptor			3	D16087.		Os03g0182600 	LOC_Os03g08440.1, LOC_Os03g08440.2				GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0000028 - ribosomal small subunit assembly, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit		
17640	_		_	Lipoamide dehydrogenase			5	D15684.	 Biochemical character	Os05g0160000 	LOC_Os05g06750.1				GO:0016491 - oxidoreductase activity, GO:0050660 - FAD binding, GO:0045454 - cell redox homeostasis		
17641	NUO	OsNUO	NADH-UBIQUINONE OXIDOREDUCTASE	NADH dehydrogenase (ubiquinone), NADH-ubiquinone oxidoreductase 51 kDa subunit, NADH-ubiquinone oxidoreductase (NUO) 51-kDa subunit of the mitochondrial complex I	NADH-UBIQUINONE OXIDOREDUCTASE		7	D22991. GO:1903409: reactive oxygen species biosynthetic process. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0645400	LOC_Os07g45090.1				GO:0051287 - NAD or NADH binding, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0010181 - FMN binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0005747 - mitochondrial respiratory chain complex I	TO:0000175 - bacterial blight disease resistance	
17642	_	OsMed36_2, Med36_2	_	Nucleolar protein 1, Mediator 36_2			5	D15995. 	 Biochemical character	Os05g0176000	LOC_Os05g08360.1, LOC_Os05g08360.2				GO:0008033 - tRNA processing, GO:0003723 - RNA binding, GO:0006364 - rRNA processing, GO:0008168 - methyltransferase activity		
17643	_	SUP44	_	Omnipotent suppressor protein SUP44			3	D15869.		Os03g0807800	LOC_Os03g59310.1				GO:0006412 - translation, GO:0009507 - chloroplast, GO:0022627 - cytosolic small ribosomal subunit, GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0005618 - cell wall		
17644	_		_	2-oxoglutarate dehydrogenase E1 component			7	D15178.	 Biochemical character	Os07g0695800	LOC_Os07g49520.1				GO:0030976 - thiamin pyrophosphate binding, GO:0006099 - tricarboxylic acid cycle, GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity		
17645	_		_	Par gene protein			7	D22794.	 Biochemical character	Os07g0647500	LOC_Os07g45320.1				GO:0004129 - cytochrome-c oxidase activity, GO:0005746 - mitochondrial respiratory chain		
17646	PGK2	OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP	PHOSPHOGLYCERATE KINASE 2	"\"phosphoglycerate kinase, cytosolic\", Phosphoglycerate kinase 2, phosphoglycerate kinase-2, Phosphoglycerate kinase protein"	PHOSPHOGLYCERATE KINASE 2		2	D16080. BF889441. LOC_Os02g07260. OsPGK2 in Joshi et al. 2015.	 Seed,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0169300	LOC_Os02g07260.1, LOC_Os02g07260.2, LOC_Os02g07260.3				GO:0050832 - defense response to fungus, GO:0004618 - phosphoglycerate kinase activity, GO:0050801 - ion homeostasis, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0006096 - glycolysis, GO:0009415 - response to water	TO:0006002 - proline content, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000495 - chlorophyll content, TO:0000237 - water stress trait, TO:0000566 - stomatal frequency	PO:0007022 - seed imbibition stage 
17647	_	OsPABPC1, PABPC1	_	Polyadenylate-binding protein			9	D15488, D15397. a homolog of AtPABP8. LOC_Os09g02700. SGs (stress granules) marker.		Os09g0115400	LOC_Os09g02700.1				GO:0000166 - nucleotide binding, GO:0003723 - RNA binding		
17648	_		_	Processing peptidase catalytic chain			5	D15329.	 Biochemical character	Os05g0524300	LOC_Os05g44916.1, LOC_Os05g44916.2				GO:0004222 - metalloendopeptidase activity, GO:0046872 - metal ion binding		
17649	_	OsPOP1, POP1	_	Prolyl endopeptidase, Prolyl Oligopeptidase 1, PROLYL OLIGOPEPTIDASE 1			1	D16061. LOC_Os01g01830. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). (http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml) GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0108200	LOC_Os01g01830.1				GO:0070008 - serine-type exopeptidase activity, GO:0009507 - chloroplast, GO:0004252 - serine-type endopeptidase activity, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
17650	AGC17	OsAGC17	AGC PROTEIN KINASE 17	Protein kinase C homolog, AGC protein kinase 17	AGC PROTEIN KINASE 17		9	D15569.	 Biochemical character	Os09g0478500	LOC_Os09g30150.1, LOC_Os09g30150.2, LOC_Os09g30150.3				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005634 - nucleus		
17651	_	PRP-22	_	PRP-22 protein			3	D16069. pre-mRNA splicing protein.		Os03g0314100	LOC_Os03g19960.1, LOC_Os03g19960.2				GO:0005730 - nucleolus, GO:0005524 - ATP binding, GO:0009941 - chloroplast envelope, GO:0005829 - cytosol, GO:0016020 - membrane, GO:0003676 - nucleic acid binding, GO:0008026 - ATP-dependent helicase activity		
17652	RRJ2	OsRRJ2	_	Pyruvate decarboxylase			5	D15369. AB040742. a Jasmonic acid (JA)-responsive gene.	 Biochemical character	Os05g0469800	LOC_Os05g39320.1				GO:0009753 - response to jasmonic acid stimulus, GO:0000287 - magnesium ion binding, GO:0030976 - thiamin pyrophosphate binding, GO:0004737 - pyruvate decarboxylase activity, GO:0016831 - carboxy-lyase activity, GO:0005829 - cytosol, GO:0003824 - catalytic activity	TO:0000172 - jasmonic acid sensitivity	
17653	PK5	OsPK5, OsPK10, PK10	PYRUVATE KINASE 5	Pyruvate kinase 5, Pyruvate kinase 10	PYRUVATE KINASE 5	ospk5, ospk5-1, ospk5-2, ospk5-3	11	D22530. OsPK5 might be a causal gene of the key QTL qSG11.1. PO:0030123: panicle inflorescence. TO:0000949: seedling growth and development trait. GO:0097009: energy homeostasis. OsPK10 in Dong et al. 2022. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Biochemical character,  Character as QTL - Grain quality,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Character as QTL - Germination,  Seed - Physiological traits - Storage substances	Os11g0216000	LOC_Os11g10980.1				GO:0009737 - response to abscisic acid stimulus, GO:0004743 - pyruvate kinase activity, GO:0030955 - potassium ion binding, GO:0010029 - regulation of seed germination, GO:0009740 - gibberellic acid mediated signaling, GO:0006096 - glycolysis, GO:0009738 - abscisic acid mediated signaling, GO:0000287 - magnesium ion binding, GO:0005737 - cytoplasm	TO:0000399 - grain thickness, TO:0000615 - abscisic acid sensitivity, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent, TO:0000345 - seed viability, TO:0000449 - grain yield per plant, TO:0000598 - protein content, TO:0000696 - starch content, TO:0000196 - amylose content, TO:0000430 - germination rate, TO:0000280 - seedling vigor, TO:0000300 - glucose content, TO:0002667 - abscisic acid content, TO:0000340 - total soluble sugar content, TO:0006005 - fructose content, TO:0000328 - sucrose content	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0007057 - 0 seed germination stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009005 - root 
17654	_	Dhr6, OsUBC5b, OsUBC16, UBC16	_	RAD6 DNA-repair homolog Dhr6, Ubiquitin-conjugation enzyme, Ubiquitin-conjugating enzyme 16			4	D15998. D50574. LOC_Os04g57220.	 Vegetative organ - Leaf,  Biochemical character	Os04g0667800	LOC_Os04g57220.1, LOC_Os04g57220.2, LOC_Os04g57220.3, LOC_Os04g57220.4				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0016881 - acid-amino acid ligase activity	TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
17655	_		_	Ribosomal protein 1024			11	D16058.		Os11g0602600 	LOC_Os11g38959.1				GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit, GO:0006412 - translation, GO:0019843 - rRNA binding		
17656	_		_	Ribosomal protein L11e			1	D15590.		Os01g0205500	LOC_Os01g10820.1				GO:0016020 - membrane, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0005773 - vacuole		
17657	_	RPL12, RPL10, OsRPL12, OsRPL10	_	Ribosomal protein L12, Ribosomal protein L10			4	LOC_Os04g50990.1 D15738. RPL10 in Moin et al. 2016.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os04g0598200	LOC_Os04g50990.1				GO:0005773 - vacuole, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0019843 - rRNA binding, GO:0016020 - membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0008270 - zinc ion binding, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome, GO:0000027 - ribosomal large subunit assembly	TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009006 - shoot system 
17658	P2A	OsP2A	RIBOSOMAL PROTEIN P2A	Ribosomal protein L12eI, ribosomal protein P2A	RIBOSOMAL PROTEIN P2A		1	D16046, D16065.		Os01g0191100	LOC_Os01g09510.1, LOC_Os01g09510.4				GO:0003735 - structural constituent of ribosome, GO:0006414 - translational elongation, GO:0005840 - ribosome		
17659	P2C	OsP2C	RIBOSOMAL PROTEIN P2C	Ribosomal protein L12eI, Ribosomal protein A2, ribosomal protein P2C	RIBOSOMAL PROTEIN P2C		5	D15912. D21114.		Os05g0445500	LOC_Os05g37330.1				GO:0003735 - structural constituent of ribosome, GO:0006414 - translational elongation, GO:0005840 - ribosome		
17660	P1	OsP1	RIBOSOMAL PROTEIN P1	Ribosomal protein L12eII, Acidic ribosomal protein P2, Ribosomal protein rp21c	RIBOSOMAL PROTEIN P1		8	D16092. D29689. D29740.		Os08g0116500	LOC_Os08g02340.1, LOC_Os08g02340.2				GO:0003735 - structural constituent of ribosome, GO:0022626 - cytosolic ribosome, GO:0006414 - translational elongation, GO:0005634 - nucleus, GO:0005886 - plasma membrane		
17661	_	mt rpl13, mt RPL13	_	Ribosomal protein L13, mitochondrial ribosomal protein L13, mitochondrial RPL13			5	D15229.		Os05g0243300	LOC_Os05g15370.1				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0006412 - translation		
17662	RPL17	RPL22, OsRPL17, OsRPL22	RIBOSOMAL PROTEIN L17	Ribosomal protein L17, Ribosomal protein L22	RIBOSOMAL PROTEIN L17		9	LOC_Os09g08430.1 D15463. RPL22 in Moin et al. 2016. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os09g0258600	LOC_Os09g08430.1				GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0022625 - cytosolic large ribosomal subunit, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0005774 - vacuolar membrane, GO:0003735 - structural constituent of ribosome	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root , PO:0009009 - plant embryo , PO:0009006 - shoot system , PO:0009089 - endosperm , PO:0009046 - flower , PO:0020103 - flag leaf 
17663	_		_	Ribosomal protein L18			3	D15568.		Os03g0341100	LOC_Os03g22180.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0003735 - structural constituent of ribosome		
17664	RPL18A	OsRPL18A	RIBOSOMAL PROTEIN L18A	Ribosomal protein L18a	RIBOSOMAL PROTEIN L18A		1	D16015. Q943F3.		Os01g0752300	LOC_Os01g54870.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009506 - plasmodesma, GO:0022625 - cytosolic large ribosomal subunit, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane		
17665	_		_	Ribosomal protein L19			3	D15210.		Os03g0579300	LOC_Os03g38260.1				GO:0009506 - plasmodesma, GO:0005730 - nucleolus, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0003735 - structural constituent of ribosome		
17666	RPL19	RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e	RIBOSOMAL PROTEIN L19	Ribosomal protein L19e, Ribosomal protein L19	RIBOSOMAL PROTEIN L19		3	LOC_Os03g21940.1 D15389. D29721. RPL19.3 in Moin et al. 2016. PO:0030117: spike inflorescence.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0337800	LOC_Os03g21940.1				GO:0003723 - RNA binding, GO:0022625 - cytosolic large ribosomal subunit, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0003735 - structural constituent of ribosome, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0020032 - plumule , PO:0020031 - radicle , PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0009046 - flower 
17667	RPL23A	OsRPL23, OsRPL23A, RPL23	RIBOSOMAL PROTEIN L23A	Ribosomal protein L23	RIBOSOMAL PROTEIN L23A		3	D16135.		Os03g0139100	LOC_Os03g04590.1, LOC_Os03g04590.2, LOC_Os03g04590.3				GO:0022625 - cytosolic large ribosomal subunit, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17668	RPL23E	OsRPL23e, OsRPL23B, RPL23B	RIBOSOMAL PROTEIN L23E	Ribosomal protein L23b	RIBOSOMAL PROTEIN L23E		10	D15653. OsRPL23B in Bakshi et al. 2023.		Os10g0466700 	LOC_Os10g32920.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome		
17669	_		_	Ribosomal protein HL25			4	D15362.		Os04g0501000 	LOC_Os04g42270.1, LOC_Os04g42270.2				GO:0016020 - membrane, GO:0009644 - response to high light intensity, GO:0006412 - translation, GO:0009409 - response to cold, GO:0022625 - cytosolic large ribosomal subunit, GO:0006979 - response to oxidative stress, GO:0000166 - nucleotide binding, GO:0003735 - structural constituent of ribosome		
17670	_		_	Ribosomal protein L26			12	D16081.		Os12g0150100	LOC_Os12g05430.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane, GO:0005730 - nucleolus, GO:0009507 - chloroplast, GO:0022625 - cytosolic large ribosomal subunit, GO:0009409 - response to cold		
17671	_		_	Ribosomal protein L27			10	D15960.		Os10g0564300	LOC_Os10g41470.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		
17672	_		_	Ribosomal protein L27a.e			7	D16093.		Os07g0613200	LOC_Os07g42170.1				GO:0016020 - membrane, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0009506 - plasmodesma		
17673	_		_	Ribosomal protein L30			1	D16076.		Os01g0812800	LOC_Os01g59730.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit		
17674	RPL31	OsRPL31	RIBOSOMAL PROTEIN L31	Ribosomal protein L31	RIBOSOMAL PROTEIN L31		6	LOC_Os06g21480.1 D15690. PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os06g0319700	LOC_Os06g21480.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall, GO:0005886 - plasma membrane, GO:0006412 - translation, GO:0009506 - plasmodesma, GO:0009751 - response to salicylic acid stimulus, GO:0009507 - chloroplast, GO:0009408 - response to heat	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance	PO:0020103 - flag leaf , PO:0020031 - radicle , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009006 - shoot system , PO:0009005 - root 
17675	DUF568.8	OsDUF568.8	DUF568-CONTAINING PROTEIN 8	Ribosomal protein L32, DUF568 family member 8, DUF568-containing protein 8	DUF568-CONTAINING PROTEIN 8		9	D15873. GO:1990904: ribonucleoprotein complex.	 Tolerance and resistance - Stress tolerance	Os09g0501100					GO:0001666 - response to hypoxia, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome	TO:0000015 - oxygen sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity	
17676	_		_	Ribosomal protein L34			8	D16082.		Os08g0156800	LOC_Os08g06040.1				GO:0005730 - nucleolus, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
17677	_		_	Ribosomal protein L35			4	D16045.		Os04g0376000					GO:0009506 - plasmodesma, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit		
17678	_		_	Ribosomal protein L35a.e			2	D16059.		Os02g0785800	LOC_Os02g54470.1, LOC_Os02g54470.2				GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17679	_		_	Ribosomal protein L36a.e			7	D15384.		Os07g0450000 	LOC_Os07g26740.1				GO:0005840 - ribosome, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17680	_		_	Ribosomal protein L37a			5	D16030. Q5QM99. D29723.		Os05g0557000 	LOC_Os05g48320.1, LOC_Os05g48320.2				GO:0046872 - metal ion binding, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome		
17681	_		_	Ribosomal protein L38			7	D15456. D29724.		Os07g0546700					GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome		
17682	_		_	Ribosomal protein L39			6	D15349 (replaced by C98057). Q5SMI4.		Os06g0181566	LOC_Os06g08320.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit		
17683	_		_	Ribosomal protein YL41			8	D22596. LOC_Os08g03579.		Os08g0129800	LOC_Os08g03579.1, LOC_Os08g03579.2				GO:0016021 - integral to membrane		
17684	_	surf-3	_	Ribosomal protein L7a, Ribosomal protein L7a.e, Transcription factor surf-3			9	D16041, D15699, D15164. P35685.		Os09g0507800 	LOC_Os09g32976.1, LOC_Os09g32976.2				GO:0022625 - cytosolic large ribosomal subunit, GO:0005774 - vacuolar membrane, GO:0042254 - ribosome biogenesis		
17685	_		_	Ribosomal protein S11			4	D16039.		Os04g0613600 	LOC_Os04g52361.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17686	_	RPS13, RPS13a, OsRPS13, OsRPS13a	_	Ribosomal protein S13, ribosomal protein small subunit 13, Ribosomal protein S13a, ribosomal protein small subunit 13a			8	LOC_Os08g02400. D16038. Q69UI2. RPS13a in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os08g0117200	LOC_Os08g02400.1				GO:0003735 - structural constituent of ribosome, GO:0050832 - defense response to fungus, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005840 - ribosome	TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	
17687	_		_	Ribosomal protein S14			4	D16088.		Os04g0413600 					GO:0005730 - nucleolus, GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17688	_		_	Ribosomal protein S16			12	D15748. Q0IQF7.		Os12g0124200 	LOC_Os12g03090.1				GO:0005618 - cell wall, GO:0009506 - plasmodesma, GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome		
17689	_	RPS17, OsRPS17	_	Ribosomal protein S17			10	D16095.		Os10g0411800	LOC_Os10g27190.1				GO:0005730 - nucleolus, GO:0022627 - cytosolic small ribosomal subunit, GO:0005886 - plasma membrane, GO:0000028 - ribosomal small subunit assembly, GO:0006414 - translational elongation, GO:0003735 - structural constituent of ribosome		
17690	_		_	Ribosomal protein S20			3	D15484.		Os03g0249400	LOC_Os03g14530.1				GO:0016020 - membrane, GO:0009506 - plasmodesma, GO:0005618 - cell wall, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0006412 - translation, GO:0022627 - cytosolic small ribosomal subunit		
17691	RPS24	OsRPS24	RIBOSOMAL PROTEIN S24	Ribosomal protein S24, ribosomal protein small subunit 24	RIBOSOMAL PROTEIN S24		1	LOC_Os01g52490. D15135.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0723200	LOC_Os01g52490.1				GO:0009737 - response to abscisic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0000166 - nucleotide binding, GO:0042542 - response to hydrogen peroxide, GO:0022627 - cytosolic small ribosomal subunit, GO:0005618 - cell wall, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0005730 - nucleolus	TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
17692	_		_	Ribosomal protein S24			7	D15666.		Os07g0208000	LOC_Os07g10720.1, LOC_Os07g10720.2				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
17693	RPS25	RPS25, RPS25a, OsRPS25, OsRPS25a	RIBOSOMAL PROTEIN S25	Ribosomal protein S25, ribosomal protein small subunit 25, Ribosomal protein S25a, ribosomal protein small subunit 25a	RIBOSOMAL PROTEIN S25		11	D15113. Q9ARZ9. RPS25a in Saha et al. 2017, Moin et al. 2017, Bakshi et al. 2023.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os11g0153800	LOC_Os11g05562.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0022627 - cytosolic small ribosomal subunit, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0005634 - nucleus, GO:0005840 - ribosome, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0046872 - metal ion binding, GO:0042542 - response to hydrogen peroxide	TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
17694	_	RPS23, OsRPS23	_	Ribosomal protein TS25, Ribosomal protein S23, ribosomal protein small subunit 23			3	LOC_Os03g60400. D15787. RPS23 in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os03g0818400 	LOC_Os03g60400.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0050832 - defense response to fungus, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0042742 - defense response to bacterium, GO:0022627 - cytosolic small ribosomal subunit	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance	
17695	RPS28 	OsRPS28, OsRPS28e, RPS28e	RIBOSOMAL PROTEIN S28	Ribosomal protein S28, ribosomal protein small subunit 28	RIBOSOMAL PROTEIN S28		10	D16035. OsRPS28e in Bakshi et al. 2023.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0411700	LOC_Os10g27174.1				GO:0005618 - cell wall, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0006412 - translation, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0006407 - rRNA export from nucleus, GO:0009651 - response to salt stress	TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
17696	_		_	Ribosomal protein S3			7	D15286 (replaced by D22580).		Os07g0608500	LOC_Os07g41750.1, LOC_Os07g41750.2, LOC_Os07g41750.3				GO:0022627 - cytosolic small ribosomal subunit, GO:0003723 - RNA binding, GO:0009506 - plasmodesma, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17697	_	RPS4, RPS19, OsRPS4, OsRPS19	_	Ribosomal protein S4, Ribosomal protein S19, ribosomal protein small subunit 4, ribosomal protein small subunit 19			3	LOC_Os03g31090. D15797. P40978. RPS19 in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os03g0424500 	LOC_Os03g31090.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0005773 - vacuole, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0003735 - structural constituent of ribosome, GO:0005618 - cell wall, GO:0042542 - response to hydrogen peroxide, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005730 - nucleolus, GO:0009737 - response to abscisic acid stimulus, GO:0009506 - plasmodesma	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
17698	_		_	Ribosomal protein S4X			2	D15827. P49398.		Os02g0105900	LOC_Os02g01560.1				GO:0019843 - rRNA binding, GO:0006412 - translation, GO:0016020 - membrane, GO:0022627 - cytosolic small ribosomal subunit, GO:0005730 - nucleolus, GO:0003735 - structural constituent of ribosome		
17699	RPS5	RPS5A, OsRPS5, OsRPS5A	RIBOSOMAL PROTEIN S5	Ribosomal protein S5, Ribosomal protein S5A, ribosomal protein small subunit 5, ribosomal protein small subunit 5a, 40S ribosomal protein S5	RIBOSOMAL PROTEIN S5		11	D15413. D29726. RPS5A in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os11g0482000	LOC_Os11g29190.1, LOC_Os11g29190.2, LOC_Os11g29190.3, LOC_Os11g29190.4, LOC_Os11g29190.5				GO:0009507 - chloroplast, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009506 - plasmodesma, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0005886 - plasma membrane, GO:0005774 - vacuolar membrane, GO:0005618 - cell wall, GO:0022627 - cytosolic small ribosomal subunit	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	
17700	RPS6A	RPS6, RPS6a, OsRPS6A, OsRPS6, OsRPS6a	RIBOSOMAL PROTEIN S6A	Ribosomal protein S6, Ribosomal protein S6a	RIBOSOMAL PROTEIN S6A		3	D15189. RPS6a in Saha et al. 2017, Moin et al. 2017.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os03g0390000	LOC_Os03g27260.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0040007 - growth, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0005886 - plasma membrane, GO:0006364 - rRNA processing, GO:0006412 - translation, GO:0009506 - plasmodesma, GO:0022627 - cytosolic small ribosomal subunit, GO:0042274 - ribosomal small subunit biogenesis, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress	TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
17701	RPS6E	OsRPS6e	RIBOSOMAL PROTEIN S6E	Ribosomal protein S6e	RIBOSOMAL PROTEIN S6E		7	D15194, D15504.		Os07g0622100	LOC_Os07g42950.1				GO:0042274 - ribosomal small subunit biogenesis, GO:0022627 - cytosolic small ribosomal subunit, GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0006364 - rRNA processing, GO:0009506 - plasmodesma, GO:0006412 - translation, GO:0040007 - growth		
17702	_		_	Ribosomal protein S7			5	D15643. Q8LJU5.		Os05g0346300	LOC_Os05g27940.1				GO:0030686 - 90S preribosome, GO:0006364 - rRNA processing, GO:0003735 - structural constituent of ribosome, GO:0042274 - ribosomal small subunit biogenesis, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0032040 - small-subunit processome		
17703	RPS3AC	RPS3a, Os RPS3a, RPS3aC, OsRPS3aC	RIBOSOMAL PROTEIN S3AC	S-phase sepcific Cyc07 protein, ribosomal protein S3a, ribosomal protein small subunit 3a	RIBOSOMAL PROTEIN S3AC		2	D15433. RPS3A in Bakshi et al. 2023.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0287000	LOC_Os02g18550.1				GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
17704	_		_	SCO1 protein			9	D15494. cytochrome oxidase.		Os09g0370200	LOC_Os09g20430.1				GO:0055070 - copper ion homeostasis		
17705	CPD2B	OsSCP10, SCP10	TYPE IIB CARBOXYPEPTIDASE	Serine carboxypeptidase II B chain, Serine carboxypeptidase 10	TYPE IIB CARBOXYPEPTIDASE		2	D23600. LOC_Os02g55130. OsSCP10 in Xu et al. 2015. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0794500	LOC_Os02g55130.1, LOC_Os02g55130.2, LOC_Os02g55130.3, LOC_Os02g55130.4, LOC_Os02g55130.5				GO:0009742 - brassinosteroid mediated signaling, GO:0004185 - serine-type carboxypeptidase activity		
17706	ARPK	ArPK, OsArPK	AL-RELATED PROTEIN KINASE 	Al-related Protein Kinase	AL-RELATED PROTEIN KINASE 	arpk	6	D16072.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0693000	LOC_Os06g47780.1				GO:0010044 - response to aluminum ion, GO:0048364 - root development, GO:0006525 - arginine metabolic process, GO:0009446 - putrescine biosynthetic process, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000656 - root development trait, TO:0000354 - aluminum sensitivity	PO:0007520 - root development stage 
17707	RLCK268	OsRLCK268	RECEPTOR-LIKE CYTOPLASMIC KINASE 268	Receptor-like Cytoplasmic Kinase 268	RECEPTOR-LIKE CYTOPLASMIC KINASE 268		9	D23546 (replaced by C98382). Serine/threonine-specific protein kinase. LOC_Os09g19700.	 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0361100	LOC_Os09g19700.1				GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0048316 - seed development, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
17708	_		_	Sm-D nuclear antigen			4	D15099. LOC_Os04g39444. Os04g0470200 (in Rap1 (build3)).			LOC_Os04g39444				GO:0005774 - vacuolar membrane, GO:0005829 - cytosol		
17709	_		_	Small nuclear ribonucleoprotein E			8	D15561.		Os08g0151600 	LOC_Os08g05550.1						
17710	RAN2	OsRAN2	RAN GTPASE 2	Spi-1 protein, Transforming protein (ras), Ran GTPase 2, Ras-like nuclear GTPase 2, Ras-related nuclear protein 2	RAN GTPASE 2		5	D15656, D15119. AB015972. Q7GD79. GTP-binding protein homolog. Transforming protein (ras). small G-protein. RAN2 in Zhang et al. 2010, Chen et al. 2011 and Xu and Cai 2014.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0574500	LOC_Os05g49890.3, LOC_Os05g49890.1, LOC_Os05g49890.2				GO:0006886 - intracellular protein transport, GO:0009635 - response to herbicide, GO:0007264 - small GTPase mediated signal transduction, GO:0006913 - nucleocytoplasmic transport, GO:0003924 - GTPase activity, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0007067 - mitosis	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000058 - herbicide sensitivity	
17711	_		_	Succinate:CoA ligase (GDP-forming) alpha chain			7	D23652. Q6ZL94.		Os07g0577700	LOC_Os07g38970.1				GO:0003878 - ATP citrate synthase activity, GO:0004775 - succinate-CoA ligase (ADP-forming) activity, GO:0005507 - copper ion binding, GO:0048037 - cofactor binding, GO:0046686 - response to cadmium ion, GO:0006099 - tricarboxylic acid cycle, GO:0005618 - cell wall, GO:0005739 - mitochondrion, GO:0005524 - ATP binding		
17712	_	Ub-CEP52-2	_	Ubiquitin, ubiquitin fused to CEP52 gene-2			9	D22504 (replaced by C97867). AB047856. P0CH35. Os09g0568400 is Cleaved into the following 2 chains: Ubiquitin & 60S ribosomal protein L40-2 (by UniProt). ubiquitin fused to ribosomal protein L40.		Os09g0568400	LOC_Os09g39500.1, LOC_Os09g39500.2				GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome, GO:0005634 - nucleus, GO:0006412 - translation		
17713	UBL40-2	UbL40-2, OsUbL40-2	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-2	Ubiquitin fusion protein, ubiquitin fusion ribosomal protein L40-2	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-2		3	D15108.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os03g0259500	LOC_Os03g15370.2, LOC_Os03g15370.1				GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0048653 - anther development, GO:0009408 - response to heat, GO:0006412 - translation	TO:0000437 - male sterility, TO:0000259 - heat tolerance	PO:0001004 - anther development stage 
17714	UBL40-1	UbL40-1, OsUbL40-1	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-1	Ubiquitin 81-aa extension protein 1, ubiquitin fusion ribosomal protein L40-1	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-1		9	D15946.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0452700 	LOC_Os09g27930.1				GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit, GO:0048653 - anther development, GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0009408 - response to heat	TO:0000437 - male sterility, TO:0000259 - heat tolerance	PO:0001004 - anther development stage 
17715	VALRS1	OsValRS1, ValRS1	VAL-TRNA SYNTHETASE 1	Valine:tRNA ligase, Val-tRNA Synthetase 1	VAL-TRNA SYNTHETASE 1		3	D22982. GO:0002161: aminoacyl-tRNA editing activity. LOC_Os03g48850.	 Biochemical character	Os03g0694900	LOC_Os03g48850.1, LOC_Os03g48850.2				GO:0005524 - ATP binding, GO:0004832 - valine-tRNA ligase activity, GO:0006438 - valyl-tRNA aminoacylation, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0009793 - embryonic development ending in seed dormancy, GO:0005739 - mitochondrion		
17716	_		_	Actin			11	D23405.		Os11g0163100	LOC_Os11g06390.1, LOC_Os11g06390.2, LOC_Os11g06390.3, LOC_Os11g06390.4, LOC_Os11g06390.5, LOC_Os11g06390.6				GO:0009506 - plasmodesma, GO:0005524 - ATP binding, GO:0051301 - cell division, GO:0009733 - response to auxin stimulus, GO:0009416 - response to light stimulus, GO:0009611 - response to wounding, GO:0048767 - root hair elongation, GO:0009845 - seed germination, GO:0005618 - cell wall, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0005856 - cytoskeleton, GO:0005829 - cytosol, GO:0005739 - mitochondrion, GO:0005730 - nucleolus, GO:0005886 - plasma membrane		
17717	_		_	Elongation factor eEF-1 alpha chain			3	D16083.									
17718	_	AGL2	_	Floral homeotic protein AGL2				D15657.									
17719	GMPS1	OsGMPS1	GMP SYNTHETASE 1	GMP synthase (glutamine-hydrolyzing), GMP synthetase 1	GMP SYNTHETASE 1		8	D22898.	 Biochemical character	Os08g0326600	LOC_Os08g23730.1				GO:0016462 - pyrophosphatase activity, GO:0006177 - GMP biosynthetic process, GO:0005829 - cytosol, GO:0006529 - asparagine biosynthetic process, GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity, GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity, GO:0005524 - ATP binding		
17720	_		_	Histone H2A IV			12	D15670. Q2QPG9.		Os12g0530000	LOC_Os12g34510.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome		
17721	_		_	Monoubiquitin-tail protein 2				D15239.									
17722	_		_	NADH dehydrogenase (ubiquinone) 78K			3	D16055.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0713400	LOC_Os03g50540.1				GO:0006979 - response to oxidative stress, GO:0009055 - electron carrier activity, GO:0045333 - cellular respiration, GO:0009507 - chloroplast, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0051536 - iron-sulfur cluster binding, GO:0042773 - ATP synthesis coupled electron transport, GO:0005747 - mitochondrial respiratory chain complex I, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
17723	_		_	Proteasome chain C8				D16042.	 Biochemical character								
17724	_		_	Ribosomal protein L21			3	D15340.	 Biochemical character	Os03g0141000	LOC_Os03g04750.1				GO:0005730 - nucleolus, GO:0022625 - cytosolic large ribosomal subunit, GO:0009507 - chloroplast, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
17725	_		_	Ribosomal protein L9				D15964.									
17726	_		_	Ribosomal protein S27			4	D15625.									
17727	_	Sec23c	_	SEC23 protein			11	D16031. transporter of secretory protein. a basic COPII coat machinery component.		Os11g0433500	LOC_Os11g24560.1				GO:0030127 - COPII vesicle coat, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0006886 - intracellular protein transport, GO:0005829 - cytosol		
17728	_		_	Transforming protein (myb)				D15468.									
17729	UBL40-4	UbL40-4, OsUbL40-4	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-4	Ubiquitin/ribosomal protein S27a, ubiquitin fusion ribosomal protein L40-4	UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-4		9	D15233.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os09g0483400	LOC_Os09g31031.3, LOC_Os09g31031.2, LOC_Os09g31031.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome, GO:0048653 - anther development, GO:0009408 - response to heat	TO:0000437 - male sterility, TO:0000259 - heat tolerance	PO:0001004 - anther development stage 
17731	_	AT320-1	_	resistance gene analog AT320-1			3	AB022166 (partial). a resistance gene analog (RGA) of Aichiasahi and Toride-1 (Japonica).							GO:0043531 - ADP binding		
17732	_	AT320-101	_	resistance gene analog AT320-101			9	AB022167 (partial). a resistance gene analog (RGA) of Aichiasahi and Toride-1 (Japonica).							GO:0043531 - ADP binding		
17733	_	A320-111	_	resistance gene analog A320-111			10	AB022168 (partial). a resistance gene analog (RGA) of Aichiasahi (Japonica).							GO:0043531 - ADP binding		
17734	_	T320-11	_	resistance gene analog T320-11			11	AB022170 (partial). a resistance gene analog (RGA) of Toride-1 (Japonica).							GO:0043531 - ADP binding		
17735	_	A320-4	_	resistance gene analog A320-4			3	AB022165 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).							GO:0043531 - ADP binding		
17736	_	A320-103	_	resistance gene analog A320-103			11	AB022169 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).							GO:0043531 - ADP binding		
17737	_	AT320-110	_	resistance gene analog AT320-110			1	AB022173 (partial). a resistance gene analog (RGA) of Aichiasahi and Toride-1 (Japonica).							GO:0043531 - ADP binding		
17738	_	A320-114	_	resistance gene analog A320-114			4	AB022171 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).							GO:0043531 - ADP binding		
17739	_	A1.1-4	_	resistance gene analog A1.1-4			5	AB022171 (partial). a resistance gene analog (RGA) of Aichi-asahi (Japonica).		Os05g0379500|Os05g0380300|Os05g0379700	LOC_Os05g31530.1|LOC_Os05g31570.1|LOC_Os05g31550.1				GO:0043531 - ADP binding, GO:0006952 - defense response		
17740	_	T580-9	_	resistance gene analog T580-9				AB022172 (partial). a resistance gene analog (RGA) of Toride-1 (Japonica).							GO:0043531 - ADP binding		
17741	_		_	Acyl carrier protein II				D29690.									
17742	_		_	casein kinase 1-gamma			1	D29694.		Os01g0744300	LOC_Os01g54100.1, LOC_Os01g54100.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
17743	_	OsCKA2-2, CKA2-2	_	casein kinase II-alpha, CK2alpha subunit 2			7	D29696. GO:2001020: regulation of response to DNA damage stimulus.		Os07g0114400	LOC_Os07g02350.1				GO:0006281 - DNA repair, GO:0005524 - ATP binding, GO:0010332 - response to gamma radiation, GO:0004674 - protein serine/threonine kinase activity, GO:0010225 - response to UV-C, GO:0007623 - circadian rhythm, GO:0051726 - regulation of cell cycle, GO:0006325 - chromatin organization		
17744	_		_	Chaperonin 10			6	D29698.							GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0006457 - protein folding		
17745	_		_	GAmRNA			9	D29705. P49210.		Os09g0485900	LOC_Os09g31180.1, LOC_Os09g31180.2				GO:0006412 - translation, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0022625 - cytosolic large ribosomal subunit, GO:0009506 - plasmodesma, GO:0005774 - vacuolar membrane, GO:0003735 - structural constituent of ribosome, GO:0019843 - rRNA binding, GO:0009955 - adaxial/abaxial pattern formation, GO:0005730 - nucleolus		
17746	_		_	glutamate 1-semialdehyde-aminotransferase				D29706.									
17747	H2B.3	OsH2B.3	HISTONE H2B.3	histone H2B, histone H2B.3	HISTONE H2B.3		1	D29712. Q94JJ7.		Os01g0149400	LOC_Os01g05610.1				GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0000786 - nucleosome		
17748	_		_	hydroxyproline-rich glycoprotein			4	D29714.		Os04g0418800	LOC_Os04g34170.1, LOC_Os04g34170.3						
17749	GSK6	OsSK13/OsGSK6, OsSK13, OsGSK6, SK13	GSK3-LIKE KINASE 6	Protein kinase-alfalfa (MSK-3) homolog, GSK3/SHAGGY-Like Kinase 13, GSK3-like Kinase 6	GSK3-LIKE KINASE 6		5	D50569. a GSK3/SHAGGY-like kinase clade I member.		Os05g0134000	LOC_Os05g04340.1, LOC_Os05g04340.2				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005737 - cytoplasm, GO:0007165 - signal transduction		
17750	RPL26	RPL24b, OsRPL26, OsRPL24b	RIBOSOMAL PROTEIN L26	Ribosomal protein L26, Ribosomal protein L24b	RIBOSOMAL PROTEIN L26		1	D50571. RPL24b in Moin et al. 2016.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os01g0140500	LOC_Os01g04730.1				GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0022625 - cytosolic large ribosomal subunit, GO:0042273 - ribosomal large subunit biogenesis, GO:0006412 - translation, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0003723 - RNA binding	TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity	PO:0009089 - endosperm , PO:0020031 - radicle , PO:0009006 - shoot system 
17751	_		_	Ribosomal protein L31			8	D29722.		Os08g0505300	LOC_Os08g39500.1				GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17752	_		_	Ribosomal protein L39			2	D29725. P51426, Q6KAJ8.		Os02g0797200					GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0022625 - cytosolic large ribosomal subunit		
17753	_		_	Ribosomal protein S11			4	D29727.		Os04g0613500					GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
17754	_		_	Ribosomal protein S12			1	D29728. Os01g0834601 (in NCBI and UniProt). LOC_Os01g61814.		Os01g0834500	LOC_Os01g61814.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
17755	_		_	Ribosomal protein S15			3	D29729.		Os03g0798600	LOC_Os03g58430.1				GO:0003735 - structural constituent of ribosome, GO:0005730 - nucleolus, GO:0005886 - plasma membrane, GO:0022627 - cytosolic small ribosomal subunit, GO:0003723 - RNA binding, GO:0005774 - vacuolar membrane, GO:0006412 - translation, GO:0009506 - plasmodesma		
17756	_		_	Ribosomal protein S19			3	D29730. P40978.		Os03g0424800	LOC_Os03g31134.1				GO:0005773 - vacuole, GO:0005618 - cell wall, GO:0022627 - cytosolic small ribosomal subunit, GO:0009506 - plasmodesma, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0016020 - membrane		
17757	_		_	ORF109			Pt	D29699.									
17758	_		_	heat shock protein 90			9	D29710 (corresponds to Os09g0482100, Os09g0482610 or Os09g0482400).	 Tolerance and resistance - Stress tolerance								
17759	_		_	heat shock protein 82			9	D29709 (corresponds to Os09g0482610 or Os09g0482400).	 Tolerance and resistance - Stress tolerance								
17760	_		_	Polyubiquitin				D50572.									
17761	_		_	Signal recognition particle 7SRNA			10	D50572.									
17762	_		_	Ribosomal protein L41				D50573.									
17764	_	ORF64	_				Pt	X15901 (Japonica Group chloroplast genome).									
17765	_	ORF64	_				Pt	X15901 (Japonica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome): BAD26863.	 Other						GO:0009507 - chloroplast		
17766	_	ORF109	_				Pt	X15901 (Japonica Group chloroplast genome). ORF within trnA intron. AP006728 (Oryza nivara chloroplast genome): BAD26836.							GO:0009507 - chloroplast		
17767	_	ORF109	_				Pt	X15901 (Japonica Group chloroplast genome). ORF within trnA intron. AP006728 (Oryza nivara chloroplast genome): BAD26856.							GO:0009507 - chloroplast		
17768	_	psb(J)	_				Pt		 Other								
17769	_	petG	_				Pt		 Other								
17770	_	psaJ	_				Pt		 Other								
17772	PSBZ	psbZ, lhbA, ORF62	_	photosystem II reaction center protein Z			Pt	LOC_Osp1g00190 (Ycf9). X15901: CAA34015 (Japonica Group chloroplast genome). JN861109, JN861110 (Indica Group chloroplast genome). AP006728 (Oryza nivara chloroplast genome). Q6ENI9.	 Biochemical character		LOC_Osp1g00190				GO:0009539 - photosystem II reaction center, GO:0009536 - plastid, GO:0042549 - photosystem II stabilization, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis, GO:0009535 - chloroplast thylakoid membrane		
17776	RPS12	rps12	RIBOSOMAL PROTEIN S12	ribosomal protein S12	RIBOSOMAL PROTEIN S12		Pt	JN861109: AER12864, JN861110 (Indica Group chloroplast genome). 	 Other						GO:0006412 - translation, GO:0015935 - small ribosomal subunit, GO:0019843 - rRNA binding, GO:0003735 - structural constituent of ribosome, GO:0009507 - chloroplast		
17777	_	orf46	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26825.							GO:0009507 - chloroplast		
17778	_	orf34	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26826.							GO:0009507 - chloroplast		
17779	_	orf42	_				Pt	JN861109 (Indica Group chloroplast genome): AER12866.							GO:0009507 - chloroplast		
17780	_	orf39	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26838.									
17781	_	orf39	_				Pt	AP006728: BAD26854 (Oryza nivara chloroplast genome).									
17782	_	orf42	_				Pt	JN861109, JN861110 (Indica Group chloroplast genome): AER12878.							GO:0009507 - chloroplast		
17783	_	orf48	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26864.									
17784	_	orf34	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26866.							GO:0009507 - chloroplast		
17785	_	orf46	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26867.							GO:0009507 - chloroplast		
17786	_	orf64	_				Pt	AP006728 (Oryza nivara chloroplast genome): BAD26828.	 Other								
17787	CYP709C9	OsCYP709C9	CYTOCHROME P450 709C9	Cytochrome P450 709C9	CYTOCHROME P450 709C9		7	a defense-related gene. OsPR1a in Huang et al. 2023.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0418500 	LOC_Os07g23570.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
17788	ELF1	OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1, OsPUB75, PUB75	ERECT LEAF 1	ERECT LEAF1, erect leaf1, plant U-box-containing protein 75, U-box protein 75, Taihu Dwarf1, Dwarf and short grain 1, U-box-type E3 ubiquitin ligase 75		elf1, elf1-1, elf1-2, elf1-3, tud1, tud1-1, tud1-2, tud1-3, tud1-4, tud1-5, dsg1	3	An E3 ubiquitin ligase. TO:0000872: leaf erect. class V PUB protein (U-box only) in Zeng et al. 2008. class III PUB protein (Ubox + ARM repeats) in Sakamoto et al. 2013. OsPUB75 in Zeng et al. 2008, Kim et al. 2021. OsPUB31 in Sakamoto et al. 2013. EST: CB636145, CB636146, C91823, CB684588, CB684587, AU094784, BI807109. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. TO:0020109: vascular bundle development trait. TO:0000822: leaf midvein anatomy and morphology trait.	 Vegetative organ - Root,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits	Os03g0232600	LOC_Os03g13010.1				GO:0009741 - response to brassinosteroid stimulus, GO:0051512 - positive regulation of unidimensional cell growth, GO:0051781 - positive regulation of cell division, GO:0005737 - cytoplasm, GO:0008283 - cell proliferation, GO:0005886 - plasma membrane, GO:0009742 - brassinosteroid mediated signaling, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0005634 - nucleus, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0048366 - leaf development	TO:0000146 - seed length, TO:0000173 - ethylene sensitivity, TO:0000472 - vascular bundle number, TO:0000135 - leaf length, TO:0000655 - leaf development trait, TO:0000163 - auxin sensitivity, TO:0000734 - grain length, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000370 - leaf width, TO:0002681 - leaf curling, TO:0000227 - root length, TO:0000040 - panicle length	PO:0001050 - leaf development stage 
17789	PIS1	OsPIS1	PHOSPHATIDYLINOSITOL SYNTHASE 1	phosphatidylinositol synthase 1	PHOSPHATIDYLINOSITOL SYNTHASE 1		2	a brassinosteroid-response gene. AJ238318.		Os02g0123600	LOC_Os02g03110.2, LOC_Os02g03110.1				GO:0008654 - phospholipid biosynthetic process, GO:0016020 - membrane, GO:0003881 - CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity		
17790	MDHAR3	MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR1, OsMDHAR1	MONODEHYDROASCORBATE REDUCTASE 3	cytosolic monodehydroascorbate reductase, monodehydroascorbate reductase	MONODEHYDROASCORBATE REDUCTASE 3		9	D85764. Q652L6. the candidate gene for qBc.9-1 (basal leaf sheath color QTL 9-1). OsMDAR3 and OsMDHAR3 in Li et al. 2014, Huang et al. 2018. MDHAR1 in Huang et al. 2018. membrane-bound peroxisomal isoform (Li et al. 2014). GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0567300	LOC_Os09g39380.1				GO:0009651 - response to salt stress, GO:0005782 - peroxisomal matrix, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0010043 - response to zinc ion, GO:0016656 - monodehydroascorbate reductase (NADH) activity, GO:0043903 - regulation of symbiosis, encompassing mutualism through parasitism, GO:0032929 - negative regulation of superoxide release, GO:0009570 - chloroplast stroma, GO:0009610 - response to symbiotic fungus, GO:0006979 - response to oxidative stress, GO:0045454 - cell redox homeostasis, GO:0009414 - response to water deprivation, GO:0009742 - brassinosteroid mediated signaling, GO:0046686 - response to cadmium ion, GO:0048046 - apoplast, GO:0050660 - FAD binding, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	
17791	PKS6	CHS, OsPKS06, OsPKS6, PKS06, OsCHS6, CHS6	POLYKETIDE SYNTHASE 6	chalcone synthase, polyketide synthase 6, Chalcone synthase 6	POLYKETIDE SYNTHASE 6		5		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Coloration - Others	Os05g0212900	LOC_Os05g12210.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009416 - response to light stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0030639 - polyketide biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000707 - pericarp color, TO:0000167 - cytokinin sensitivity, TO:0000075 - light sensitivity, TO:0000166 - gibberellic acid sensitivity	
17792	_	DIP3, XIP, OsHI-XIP, OsXIP2, XIP2	_	drought-induced protein 3, Xylanase inhibitor protein 2			5	a chitinase III protein. JQ218437. a Xylanase Inhibitor. Xylanase inhibitor protein 2 in Sudo et al. 2008. glycosyl hydrolase (GH).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance,  Biochemical character	Os05g0247100	LOC_Os05g15770.1				GO:0080027 - response to herbivore, GO:0005783 - endoplasmic reticulum, GO:0005576 - extracellular region, GO:0010224 - response to UV-B, GO:0046688 - response to copper ion, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009409 - response to cold, GO:0002213 - defense response to insect, GO:0005975 - carbohydrate metabolic process, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0004568 - chitinase activity, GO:0009414 - response to water deprivation	TO:0000172 - jasmonic acid sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000303 - cold tolerance, TO:0000424 - brown planthopper resistance, TO:0000454 - stem borer resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity	
17793	CYP72A31		P-450 72A31	Cytochrome P450 72A31			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0602200	LOC_Os01g41800.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009635 - response to herbicide, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity	TO:0000058 - herbicide sensitivity	
17794	CYP72A32	OsCYP72A32	P-450 72A32	Cytochrome P450 72A32			1	LOC_Os01g41810.	 Biochemical character	Os01g0602400	LOC_Os01g41810.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17795	CYP72A33		P-450 72A33	Cytochrome P450 72A33			1		 Biochemical character	Os01g0602500	LOC_Os01g41820.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
17796	PUB1	OsPUB1, OsPUB01, OsUFD2, OsPUB1, PUB1	PLANT U-BOX-CONTAINING PROTEIN 1	ubiquitin fusion degradation protein-2, plant U-box-containing protein 1, U-box protein 1, U-box-type E3 ubiquitin ligase 1	PLANT U-BOX-CONTAINING PROTEIN 1		3	class I PUB protein (UFD2 specific motif + U-box). EST: CB639670, CB640908, CB619295, CB619296, AU078410, CB643846, CB643847, CB000450, CA764512, AU078411, CR281540, CF328714, CF328715.	 Biochemical character	Os03g0427900	LOC_Os03g31400.1				GO:0005829 - cytosol, GO:0034450 - ubiquitin-ubiquitin ligase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0000151 - ubiquitin ligase complex		
17797	PUB4	OsPUB4, OsPUB04, OsPUB4, PUB4	PLANT U-BOX-CONTAINING PROTEIN 4	plant U-box-containing protein 4, U-box protein 4, U-box-type E3 ubiquitin ligase 4	PLANT U-BOX-CONTAINING PROTEIN 4		2	class II PUB protein (U-box + ARM/HEAT). Q6EUK7. EST: CB630469, CB630470, CB643247, CB643248, AU032329, CF325064, CK738435, BQ908529, AU173816.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0234300	LOC_Os02g13960.1				GO:0016567 - protein ubiquitination, GO:0009414 - response to water deprivation, GO:0004842 - ubiquitin-protein ligase activity, GO:0007623 - circadian rhythm, GO:0000151 - ubiquitin ligase complex, GO:0009817 - defense response to fungus, incompatible interaction	TO:0000276 - drought tolerance	
17798	PUB5	OsPUB5, OsPUB05, OsPUB5, PUB5	PLANT U-BOX-CONTAINING PROTEIN 5	plant U-box-containing protein 5, U-box protein 5, U-box-type E3 ubiquitin ligase 5	PLANT U-BOX-CONTAINING PROTEIN 5		8	class II PUB protein (U-box + ARM/HEAT).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0415600	LOC_Os08g32060.1				GO:0009651 - response to salt stress, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
17799	PUB6	OsPUB6, OsPUB06, OsPUB6, PUB6	PLANT U-BOX-CONTAINING PROTEIN 6	plant U-box-containing protein 6, U-box protein 6, U-box-type E3 ubiquitin ligase 6	PLANT U-BOX-CONTAINING PROTEIN 6		9	class II PUB protein (U-box + ARM/HEAT)..	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0378700 	LOC_Os09g21120.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0016874 - ligase activity	TO:0006001 - salt tolerance	
17800	PUB7	OsPUB7, OsPUB07, PUB07	PLANT U-BOX-CONTAINING PROTEIN 7	plant U-box-containing protein 7, U-box protein 7, U-box-type E3 ubiquitin ligase 7	PLANT U-BOX-CONTAINING PROTEIN 7		4	class II PUB protein (U-box + ARM/HEAT). EST: CB650396, CB650395. GO:1901001: negative regulation of response to salt stress. GO:0080148: negative regulation of response to water deprivation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0348400	LOC_Os04g28100.1				GO:0009651 - response to salt stress, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0071215 - cellular response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000276 - drought tolerance	
17801	PUB8	OsPUB8, OsPUB08, OsPUB8, PUB8	PLANT U-BOX-CONTAINING PROTEIN 8	plant U-box-containing protein 8, U-box protein 8, U-box-type E3 ubiquitin ligase 8	PLANT U-BOX-CONTAINING PROTEIN 8		4	class II PUB protein (U-box + ARM/HEAT). EST:AU225089, CF310095, BI801229, AA754456, BI807368	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0488600	LOC_Os02g28720.1				GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
17802	PUB9	OsPUB9, OsPUB09, OsPUB9, PUB9	PLANT U-BOX-CONTAINING PROTEIN 9	plant U-box-containing protein 9, U-box protein 9, U-box-type E3 ubiquitin ligase 9	PLANT U-BOX-CONTAINING PROTEIN 9		2	class II PUB protein (U-box + ARM/HEAT). EST: CB672091, CB672092, CB634863, CB634864, AU097467, AU033197.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0732200	LOC_Os02g49950.1				GO:0042742 - defense response to bacterium, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0010200 - response to chitin	TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance	
17803	PUB10	OsPUB10, OsPUB10, PUB10	PLANT U-BOX-CONTAINING PROTEIN 10	plant U-box-containing protein 10, U-box protein 10, U-box-type E3 ubiquitin ligase 10	PLANT U-BOX-CONTAINING PROTEIN 10		3	class II PUB protein (U-box + ARM/HEAT). EST: BE040196, CA758916, CB636819.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0275900	LOC_Os03g16824.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0009409 - response to cold, GO:0000151 - ubiquitin ligase complex	TO:0000303 - cold tolerance	
17804	PUB12	OsPUB12, OsPUB12, PUB12	PLANT U-BOX-CONTAINING PROTEIN 12	plant U-box-containing protein 12, U-box protein 12, U-box-type E3 ubiquitin ligase 12	PLANT U-BOX-CONTAINING PROTEIN 12		6	class II PUB protein (U-box + ARM/HEAT). Q5VRH9. AK067611. EST: CB629073, CB629075, CB661839, CB661840, CB647707, CB647708, CB663113, CB663114, CB661157, CB661158, CB640944, BM421775, AU070995.	 Biochemical character	Os06g0102700	LOC_Os06g01304.1, LOC_Os06g01304.2, LOC_Os06g01304.3				GO:0004842 - ubiquitin-protein ligase activity, GO:0016567 - protein ubiquitination, GO:0000151 - ubiquitin ligase complex		
17805	PUB13	OsPUB13, OsSTA182, OsPUB13, PUB13	PLANT U-BOX-CONTAINING PROTEIN 13	plant U-box-containing protein 13, U-box protein 13, U-box-type E3 ubiquitin ligase 13	PLANT U-BOX-CONTAINING PROTEIN 13		6	class II PUB protein (U-box + ARM/HEAT). a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os06g0726900	LOC_Os06g51130.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		PO:0009066 - anther 
17806	PUB14	OsPUB14, OsPUB14, PUB14	PLANT U-BOX-CONTAINING PROTEIN 14	plant U-box-containing protein 14, U-box protein 14, U-box-type E3 ubiquitin ligase 14	PLANT U-BOX-CONTAINING PROTEIN 14		8	class II PUB protein (U-box + ARM/HEAT). EST: CA762420. SPL11-like protein (homologous protein of spotted leaf11).	 Biochemical character	Os08g0481200	LOC_Os08g37570.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		PO:0025281 - pollen 
17807	PUB15	OsPUB15, OsPUB15, PUB15	PLANT U-BOX-CONTAINING PROTEIN 15	plant U-box-containing protein 15, U-box protein 15, U-box-type E3 ubiquitin ligase 15	PLANT U-BOX-CONTAINING PROTEIN 15		8	class II PUB protein (U-box + ARM/HEAT). EST: AU069544, CB675602, CB675603, CB637298, CF304665, C26426, CB631051, AU092305, CA760274, CR281099. a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character	Os08g0110500	LOC_Os08g01900.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17808	PUB16	OsPUB16, OsPUB16, PUB16	PLANT U-BOX-CONTAINING PROTEIN 16	plant U-box-containing protein 16, U-box protein 16, U-box-type E3 ubiquitin ligase 16, PLANT U-BOX PROTEIN 16	PLANT U-BOX-CONTAINING PROTEIN 16	ospub16, ospub16-1, ospub16-2	1	class II PUB protein (U-box + ARM/HEAT). EST: CF326076. GO:0080148: negative regulation of response to water deprivation. GO:2000060: positive regulation of ubiquitin-dependent protein catabolic process. GO:2000038: regulation of stomatal complex development. TO:0020095: stomatal process related trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Character as QTL - Plant growth activity,  Biochemical character	Os01g0884400	LOC_Os01g66130.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0016567 - protein ubiquitination, GO:0030104 - water homeostasis, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0000151 - ubiquitin ligase complex, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0045732 - positive regulation of protein catabolic process, GO:0007623 - circadian rhythm, GO:0010119 - regulation of stomatal movement, GO:0010374 - stomatal complex development, GO:0006979 - response to oxidative stress	TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000357 - growth and development trait, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000566 - stomatal frequency	PO:0020148 - shoot apical meristem , PO:0025034 - leaf 
17809	PUB17	OsPUB17, OsPUB17, PUB17	PLANT U-BOX-CONTAINING PROTEIN 17	plant U-box-containing protein 17, U-box protein 17, U-box-type E3 ubiquitin ligase 17	PLANT U-BOX-CONTAINING PROTEIN 17		8	class II PUB protein (U-box + ARM/HEAT). 	 Biochemical character	Os08g0421850	LOC_Os08g32610.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17810	PUB18	OsPUB18, OsPUB18, PUB18	PLANT U-BOX-CONTAINING PROTEIN 18	plant U-box-containing protein 18, U-box protein 18, U-box-type E3 ubiquitin ligase 18	PLANT U-BOX-CONTAINING PROTEIN 18		9	class II PUB protein (U-box + ARM/HEAT). EST: CB655398, CA756899, CB655399, D49059, D49048, AU070443, AU032876.	 Biochemical character	Os09g0386200	LOC_Os09g21740.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17811	PUB19	OsPUB19, OsPUB19, PUB19	PLANT U-BOX-CONTAINING PROTEIN 19	plant U-box-containing protein 19, U-box protein 19, U-box-type E3 ubiquitin ligase 19	PLANT U-BOX-CONTAINING PROTEIN 19		6	class II PUB protein (U-box + ARM/HEAT).	 Biochemical character	Os06g0238200	LOC_Os06g13090.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17812	PUB20	OsPUB20, OsPUB20, PUB20	PLANT U-BOX-CONTAINING PROTEIN 20	plant U-box-containing protein 20, U-box protein 20, U-box-type E3 ubiquitin ligase 20	PLANT U-BOX-CONTAINING PROTEIN 20		6	class II PUB protein (U-box + ARM/HEAT).	 Biochemical character	Os06g0238000	LOC_Os06g13080.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0007623 - circadian rhythm		
17813	PUB21	OsPUB21, OsPUB21, PUB21	PLANT U-BOX-CONTAINING PROTEIN 21	plant U-box-containing protein 21, U-box protein 21, U-box-type E3 ubiquitin ligase 21	PLANT U-BOX-CONTAINING PROTEIN 21		2	class II PUB protein (U-box + ARM/HEAT).	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0727300	LOC_Os02g49520.1				GO:0000151 - ubiquitin ligase complex, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0016301 - kinase activity, GO:0004842 - ubiquitin-protein ligase activity	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
17814	PUB22	OsPUB22, OsPUB22, PUB22	PLANT U-BOX-CONTAINING PROTEIN 22	plant U-box-containing protein 22, U-box protein 22, U-box-type E3 ubiquitin ligase 22	PLANT U-BOX-CONTAINING PROTEIN 22		6	class II PUB protein (U-box + ARM/HEAT). EST: CB656843, CB656844, CB638682, CB638681, CB638683, CB654780, CB654781.	 Biochemical character	Os06g0275700	LOC_Os06g16410.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17815	PUB23	OsPUB23	PLANT U-BOX-CONTAINING PROTEIN 23	plant U-box-containing protein 23, U-box protein 23, U-box-type E3 ubiquitin ligase 23	PLANT U-BOX-CONTAINING PROTEIN 23		12	class II PUB protein (U-box + ARM/HEAT). EST: CB644678, CB644679, BE228945, CA765839.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0277400	LOC_Os12g17900.1				GO:0050832 - defense response to fungus, GO:0004842 - ubiquitin-protein ligase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0000151 - ubiquitin ligase complex	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
17816	PUB24	OsPUB24	PLANT U-BOX-CONTAINING PROTEIN 24	plant U-box-containing protein 24, U-box protein 24, U-box-type E3 ubiquitin ligase 24	PLANT U-BOX-CONTAINING PROTEIN 24	ospub24	3	class II PUB protein (U-box + ARM/HEAT). EST: AU101622, AU164585. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0657100	LOC_Os03g45420.1				GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0000151 - ubiquitin ligase complex, GO:0050832 - defense response to fungus, GO:0009742 - brassinosteroid mediated signaling, GO:0009414 - response to water deprivation, GO:0004842 - ubiquitin-protein ligase activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0002677 - brassinosteroid sensitivity	
17817	PUB25	OsPUB25, OsPUB25, PUB25	PLANT U-BOX-CONTAINING PROTEIN 25	plant U-box-containing protein 25, U-box protein 25, U-box-type E3 ubiquitin ligase 25	PLANT U-BOX-CONTAINING PROTEIN 25		12	class II PUB protein (U-box + ARM/HEAT). EST: CB672899, CB672900, CF306503, CB640118, CB675872, CB675873, AU056255, CB632057, AU056256, BI809202.	 Biochemical character	Os12g0277000	LOC_Os12g17880.1				GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0010271 - regulation of chlorophyll catabolic process, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0010380 - regulation of chlorophyll biosynthetic process		
17818	PUB26	OsPUB26, OsPUB26, PUB26	PLANT U-BOX-CONTAINING PROTEIN 26	plant U-box-containing protein 26, U-box protein 26, U-box-type E3 ubiquitin ligase 26	PLANT U-BOX-CONTAINING PROTEIN 26		3	class V PUB protein (U-box only). EST: CI636688, CI660771, AC133007, CK047093, CI419583, CI436441, CI441137, CI440634, CI483651.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0816000	LOC_Os03g60140.1				GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
17819	RHS1	OsRHS1, OsPUB27, PUB27	RICE HIGH SHATTERING 1	plant U-box-containing protein 27, U-box protein 27, U-box-type E3 ubiquitin ligase 27	PLANT U-BOX-CONTAINING PROTEIN 27	rhs1	4	class II PUB protein (U-box + ARM/HEAT). a putative armadillo/beta-catenin repeat family protein. EST: C72885, AU082230. TO:0000930: seed shattering. GO:0071731: response to nitric oxide. GO:2001057: reactive nitrogen species metabolic process.	 Biochemical character,  Seed - Physiological traits - Shattering,  Character as QTL - Plant growth activity	Os04g0489800	LOC_Os04g41250.1				GO:0080050 - regulation of seed development, GO:0009507 - chloroplast, GO:0000151 - ubiquitin ligase complex, GO:0051409 - response to nitrosative stress, GO:0004842 - ubiquitin-protein ligase activity	TO:0000040 - panicle length, TO:0000456 - spikelet number, TO:0000473 - grain shattering, TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000357 - growth and development trait, TO:0000576 - stem length	PO:0009005 - root , PO:0009010 - seed 
17820	PUB28	OsPUB28, OsPUB45, PUB45, OsPUB28, PUB28	PLANT U-BOX-CONTAINING PROTEIN 28	plant U-box-containing protein 28, U-box protein 28, U-box-type E3 ubiquitin ligase 28	PLANT U-BOX-CONTAINING PROTEIN 28		1	class II PUB protein (U-box + ARM/HEAT). EST: CB679893, CB679894, AU094854, BX899859, C91848. OsPUB45 in Lu et al. 2020.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0901000	LOC_Os01g67500.1, LOC_Os01g67500.3				GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
17821	PUB29	OsPUB29, OsPUB29, PUB29	PLANT U-BOX-CONTAINING PROTEIN 29	plant U-box-containing protein 29, U-box protein 29, U-box-type E3 ubiquitin ligase 29	PLANT U-BOX-CONTAINING PROTEIN 29		2	class II PUB protein (U-box + ARM/HEAT). EST: CB659631, CB659632, AU056349, CA759692, AU056350.	 Biochemical character	Os02g0705600	LOC_Os02g47670.1, LOC_Os02g47670.2				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17822	PUB30	OsPUB30, OsPUB30, PUB30	PLANT U-BOX-CONTAINING PROTEIN 30	plant U-box-containing protein 30, U-box protein 30, U-box-type E3 ubiquitin ligase 30	PLANT U-BOX-CONTAINING PROTEIN 30		8	class II PUB protein (U-box + ARM/HEAT). EST: AU069933.	 Biochemical character	Os08g0139400	LOC_Os08g04470.1				GO:0008270 - zinc ion binding, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17823	PUB31	OsPUB31, OsPUB31, PUB31	PLANT U-BOX-CONTAINING PROTEIN 31	plant U-box-containing protein 31, U-box protein 31, U-box-type E3 ubiquitin ligase 31	PLANT U-BOX-CONTAINING PROTEIN 31		1	class III PUB protein (U-box + GKL-box).	 Biochemical character	Os01g0865700	LOC_Os01g64570.1				GO:0000151 - ubiquitin ligase complex, GO:0010200 - response to chitin, GO:0051865 - protein autoubiquitination, GO:0002679 - respiratory burst during defense response, GO:0004842 - ubiquitin-protein ligase activity, GO:0009414 - response to water deprivation, GO:0005829 - cytosol		
17824	PUB32	OsPUB32, OsPUB32, PUB32	PLANT U-BOX-CONTAINING PROTEIN 32	plant U-box-containing protein 32, U-box protein 32, U-box-type E3 ubiquitin ligase 32	PLANT U-BOX-CONTAINING PROTEIN 32		4	class III PUB protein (U-box + GKL-box). EST: CB641925, CB641926, CB641964, CB641965.	 Biochemical character	Os04g0686000	LOC_Os04g58920.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17825	PUB33	OsPUB33, OsPUB33, PUB33	PLANT U-BOX-CONTAINING PROTEIN 33	plant U-box-containing protein 33, U-box protein 33, U-box-type E3 ubiquitin ligase 33	PLANT U-BOX-CONTAINING PROTEIN 33		2	class III PUB protein (U-box + GKL-box). EST: BI808859. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0539200	LOC_Os02g33590.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000276 - drought tolerance	
17826	PUB34	OsPUB34, OsPUB34, PUB34	PLANT U-BOX-CONTAINING PROTEIN 34	plant U-box-containing protein 34, U-box protein 34, U-box-type E3 ubiquitin ligase 34	PLANT U-BOX-CONTAINING PROTEIN 34		4	class III PUB protein (U-box + GKL-box). GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0417400	LOC_Os04g34030.1				GO:0009723 - response to ethylene stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0007623 - circadian rhythm	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity	
17827	PUB35	OsPUB35, OsPUB35, PUB35	PLANT U-BOX-CONTAINING PROTEIN 35	plant U-box-containing protein 35, U-box protein 35, U-box-type E3 ubiquitin ligase 35	PLANT U-BOX-CONTAINING PROTEIN 35		4	class III PUB protein (U-box + GKL-box).	 Biochemical character	Os04g0589700	LOC_Os04g49970.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17828	PUB36	OsPUB36, OsPUB36, PUB36	PLANT U-BOX-CONTAINING PROTEIN 36	plant U-box-containing protein 36, U-box protein 36, U-box-type E3 ubiquitin ligase 36	PLANT U-BOX-CONTAINING PROTEIN 36		2	class III PUB protein (U-box + GKL-box).	 Biochemical character	Os02g0690600	LOC_Os02g46500.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17829	PUB37	OsPUB37, OsPUB37, PUB37	PLANT U-BOX-CONTAINING PROTEIN 37	plant U-box-containing protein 37, U-box protein 37, U-box-type E3 ubiquitin ligase 37	PLANT U-BOX-CONTAINING PROTEIN 37		12	class III PUB protein (U-box + GKL-box).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0161100	LOC_Os12g06410.1				GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
17830	PUB38	OsPUB38, OsPUB38, PUB38	PLANT U-BOX-CONTAINING PROTEIN 38	plant U-box-containing protein 38, U-box protein 38, U-box-type E3 ubiquitin ligase 38	PLANT U-BOX-CONTAINING PROTEIN 38		4	class III PUB protein (U-box + GKL-box).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0437300	LOC_Os04g35680.1				GO:0009414 - response to water deprivation, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0050832 - defense response to fungus, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
17831	PUB39	OsPUB39, OsPUB39, PUB39	PLANT U-BOX-CONTAINING PROTEIN 39	plant U-box-containing protein 39, U-box protein 39, U-box-type E3 ubiquitin ligase 39	PLANT U-BOX-CONTAINING PROTEIN 39		6	class III PUB protein (U-box + GKL-box). EST: AU174669. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0248500	LOC_Os06g13870.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0000151 - ubiquitin ligase complex	TO:0000605 - hydrogen peroxide content, TO:0000173 - ethylene sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
17832	PUB40	OsPUB40, OsPUB40, PUB40	PLANT U-BOX-CONTAINING PROTEIN 40	plant U-box-containing protein 40, U-box protein 40, U-box-type E3 ubiquitin ligase 40	PLANT U-BOX-CONTAINING PROTEIN 40		2	class III PUB protein (U-box + GKL-box). EST: AU100984, AU100985, AU063504, AU172336.	 Biochemical character	Os02g0738200	LOC_Os02g50460.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17833	PUB42	OsPUB42	PLANT U-BOX-CONTAINING PROTEIN 42	plant U-box-containing protein 42, U-box protein 42	PLANT U-BOX-CONTAINING PROTEIN 42		10	class III PUB protein (U-box + GKL-box).	 Biochemical character		LOC_Os10g03440				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17834	PUB43	OsPUB43, OsPUB43, PUB43	PLANT U-BOX-CONTAINING PROTEIN 43	plant U-box-containing protein 43, U-box protein 43, U-box-type E3 ubiquitin ligase 43	PLANT U-BOX-CONTAINING PROTEIN 43	ospub43, ospub43-1, ospub43-2	2	class III PUB protein (U-box + GKL-box). EST: AU184395. PO:0030123: panicle inflorescence. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. TO:0000975: grain width.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os02g0548700	LOC_Os02g34410.1				GO:0000151 - ubiquitin ligase complex, GO:0008285 - negative regulation of cell proliferation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009738 - abscisic acid mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0080006 - internode patterning, GO:0004842 - ubiquitin-protein ligase activity, GO:0010200 - response to chitin	TO:0002688 - leaf lamina joint bending, TO:0000615 - abscisic acid sensitivity, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000206 - leaf angle, TO:0000590 - grain weight, TO:0000172 - jasmonic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0000145 - internode length	PO:0020033 - coleoptile , PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009005 - root 
17835	PUB44	OsPUB44	PLANT U-BOX-CONTAINING PROTEIN 44	plant U-box-containing protein 44, U-box protein 44, U-box-type E3 ubiquitin ligase 44	PLANT U-BOX-CONTAINING PROTEIN 44		5	class III PUB protein (U-box + GKL-box). EST: CB669445, CB669446, CB650659, CB650660, CB645255, CB645256, CB650137, CB650138, CB649839, CB647557, BM421109, BI807625, BI808006, BQ908725, AI096168.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0439400	LOC_Os05g36360.1				GO:0002237 - response to molecule of bacterial origin, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex, GO:0032494 - response to peptidoglycan, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
17836	PUB45	OsPUB45, P3IP1, OsP3IP1, OsPUB45/P3IP1, PUB45/P3IP1	PLANT U-BOX-CONTAINING PROTEIN 45	plant U-box-containing protein 45, U-box protein 45, P3-inducible protein 1, U-box-type E3 ubiquitin ligase 45	PLANT U-BOX-CONTAINING PROTEIN 45		2	class III PUB protein (U-box + GKL-box). 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Vegetative organ - Culm	Os02g0540700	LOC_Os02g33680.1				GO:0030163 - protein catabolic process, GO:0000151 - ubiquitin ligase complex, GO:0051607 - defense response to virus, GO:0009615 - response to virus, GO:0004842 - ubiquitin-protein ligase activity	TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
17837	PUB46	OsPUB46	PLANT U-BOX-CONTAINING PROTEIN 46	plant U-box-containing protein 46, U-box protein 46, U-box-type E3 ubiquitin ligase 46	PLANT U-BOX-CONTAINING PROTEIN 46		4	class III PUB protein (U-box + GKL-box). EST: AU089778, AU089779, D49041.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0418500	LOC_Os04g34140.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
17838	RLCK207	OsPUB47, PUB47, OsRLCK207, OsUSP29, USP29, OsPUB47, PUB47	RECEPTOR-LIKE CYTOPLASMIC KINASE 207	plant U-box-containing protein 47, U-box protein 47, Receptor-like Cytoplasmic Kinase 207, universal stress protein 29, U-box-type E3 ubiquitin ligase 47	RECEPTOR-LIKE CYTOPLASMIC KINASE 207		6	class IV PUB protein (Kinase + U-box). EST: CB627135, CB668863, TC257914.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Biochemical character,  Seed	Os06g0574200	LOC_Os06g37620.1				GO:0000151 - ubiquitin ligase complex, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004842 - ubiquitin-protein ligase activity, GO:0009611 - response to wounding, GO:0007623 - circadian rhythm, GO:0048316 - seed development, GO:0006950 - response to stress, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0005052 - plant callus , PO:0009009 - plant embryo 
17839	RLCK69	OsPUB48, PUB48, OsRLCK69, OsUSP10, USP10, OsPUB48, PUB48	RECEPTOR-LIKE CYTOPLASMIC KINASE 69	plant U-box-containing protein 48, U-box protein 48, Receptor-like Cytoplasmic Kinase 69, universal stress protein 10, U-box-type E3 ubiquitin ligase 48	RECEPTOR-LIKE CYTOPLASMIC KINASE 69		2	class IV PUB protein (Kinase + U-box). EST: C73105, CB096600, CR280370, CB647037, AU075377.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Reproductive organ - panicle,  Biochemical character	Os02g0218600	LOC_Os02g12670.1				GO:0006950 - response to stress, GO:0004842 - ubiquitin-protein ligase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding, GO:0009413 - response to flooding, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0000151 - ubiquitin ligase complex	TO:0000621 - inflorescence development trait, TO:0000524 - submergence tolerance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009005 - root , PO:0005052 - plant callus 
17840	RLCK307	OsPUB49, PUB49, OsRLCK307, OsUSP38, USP38, OsPUB49, PUB49	RECEPTOR-LIKE CYTOPLASMIC KINASE 307	plant U-box-containing protein 49, U-box protein 49, Receptor-like Cytoplasmic Kinase 307, universal stress protein 38, U-box-type E3 ubiquitin ligase 49	RECEPTOR-LIKE CYTOPLASMIC KINASE 307		10	class IV PUB protein (Kinase + U-box). EST: AU094827, CB672905.	 Seed,  Biochemical character,  Reproductive organ - panicle	Os10g0561500	LOC_Os10g41220.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0048316 - seed development, GO:0006950 - response to stress, GO:0000151 - ubiquitin ligase complex, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0009009 - plant embryo , PO:0009010 - seed , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
17841	RLCK93	OsPUB50, PUB50, OsRLCK93	RECEPTOR-LIKE CYTOPLASMIC KINASE 93	plant U-box-containing protein 50, U-box protein 50, Receptor-like Cytoplasmic Kinase 93, U-box-type E3 ubiquitin ligase 50	RECEPTOR-LIKE CYTOPLASMIC KINASE 93		3	class IV PUB protein (Kinase + U-box). EST: AU222811.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os03g0101200	LOC_Os03g01160.2				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0000151 - ubiquitin ligase complex, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
17842	RLCK194	OsPUB51, PUB51, OsRLCK194, OsUSP27, USP27, OsPUB51, PUB51	RECEPTOR-LIKE CYTOPLASMIC KINASE 194	plant U-box-containing protein 51, U-box protein 51, Receptor-like Cytoplasmic Kinase 194, universal stress protein 27, U-box-type E3 ubiquitin ligase 51	RECEPTOR-LIKE CYTOPLASMIC KINASE 194		6	class IV PUB protein (Kinase + U-box). EST: CB634275, CB634276, CB663207, CB663208, CB661735, CB661736, CB663242, CB676242.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed	Os06g0140800	LOC_Os06g04880.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0000151 - ubiquitin ligase complex, GO:0005886 - plasma membrane, GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004842 - ubiquitin-protein ligase activity	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease	PO:0005052 - plant callus , PO:0025034 - leaf , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009009 - plant embryo 
17843	RLCK280	OsPUB52, PUB52, OsRLCK280, OsUSP33, USP33, OsPUB52, PUB52	RECEPTOR-LIKE CYTOPLASMIC KINASE 280	plant U-box-containing protein 52, U-box protein 52, Receptor-like Cytoplasmic Kinase 280, universal stress protein 33, U-box-type E3 ubiquitin ligase 52	RECEPTOR-LIKE CYTOPLASMIC KINASE 280		9	class IV PUB protein (Kinase + U-box). EST: C73201.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os09g0569800	LOC_Os09g39620.1				GO:0006950 - response to stress, GO:0000151 - ubiquitin ligase complex, GO:0004674 - protein serine/threonine kinase activity, GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0010229 - inflorescence development, GO:0009737 - response to abscisic acid stimulus, GO:0007623 - circadian rhythm, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009611 - response to wounding	TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0001083 - inflorescence development stage , PO:0005052 - plant callus , PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009005 - root , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
17844	RLCK305	OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1, OsPUB53, PUB53	RECEPTOR-LIKE CYTOPLASMIC KINASE 305	plant U-box-containing protein 53, U-box protein 53, Receptor-like Cytoplasmic Kinase 305, Mediator 2_1, U-box-type E3 ubiquitin ligase 53	RECEPTOR-LIKE CYTOPLASMIC KINASE 305		10	class IV PUB protein (Kinase + U-box). EST: D48628, CB666071, CB666072, BP184834.	 Tolerance and resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0548300	LOC_Os10g40060.1, LOC_Os10g40060.2, LOC_Os10g40060.3, LOC_Os10g40060.4				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0004842 - ubiquitin-protein ligase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0000151 - ubiquitin ligase complex	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
17845	RLCK306	OsPUB54, PUB54, OsRLCK306, OsPUB54, PUB54	RECEPTOR-LIKE CYTOPLASMIC KINASE 306	plant U-box-containing protein 54, U-box protein 54, Receptor-like Cytoplasmic Kinase 306, U-box-type E3 ubiquitin ligase 54	RECEPTOR-LIKE CYTOPLASMIC KINASE 306		10	class IV PUB protein (Kinase + U-box). EST: CB674756, BM421191.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0548700	LOC_Os10g40100.1, LOC_Os10g40100.2				GO:0004842 - ubiquitin-protein ligase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0000151 - ubiquitin ligase complex, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
17846	RLCK81	OsPUB55, PUB55, OsRLCK81, OsPUB55, PUB55	RECEPTOR-LIKE CYTOPLASMIC KINASE 81	plant U-box-containing protein 55, U-box protein 55, Receptor-like Cytoplasmic Kinase 81, U-box-type E3 ubiquitin ligase 55	RECEPTOR-LIKE CYTOPLASMIC KINASE 81		2	class IV PUB protein (Kinase + U-box). BAD27770.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0665800	LOC_Os02g44610.1				GO:0005524 - ATP binding, GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0000151 - ubiquitin ligase complex, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance	
17847	RLCK281	OsPUB56, PUB56, OsRLCK281, OsUSP34, USP34, OsPUB56, PUB56	RECEPTOR-LIKE CYTOPLASMIC KINASE 281	plant U-box-containing protein 56, U-box protein 56, Receptor-like Cytoplasmic Kinase 281, universal stress protein 34, U-box-type E3 ubiquitin ligase 56	RECEPTOR-LIKE CYTOPLASMIC KINASE 281		9	class IV PUB protein (Kinase + U-box). EST: CB631963, CF316548, CF316549, CA882843.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0570000	LOC_Os09g39640.1				GO:0002213 - defense response to insect, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0004842 - ubiquitin-protein ligase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0000151 - ubiquitin ligase complex	TO:0000074 - blast disease, TO:0000261 - insect damage resistance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0009005 - root 
17848	RLCK112	OsPUB57, PUB57, OsRLCK112, OsPUB57, PUB57	RECEPTOR-LIKE CYTOPLASMIC KINASE 112	plant U-box-containing protein 57, U-box protein 57, Receptor-like Cytoplasmic Kinase 112, U-box-type E3 ubiquitin ligase 57	RECEPTOR-LIKE CYTOPLASMIC KINASE 112		3	class IV PUB protein (Kinase + U-box). Q0DR28.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0424200	LOC_Os03g31070.1, LOC_Os03g31070.2				GO:0050832 - defense response to fungus, GO:0016874 - ligase activity, GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0000151 - ubiquitin ligase complex, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
17849	PUB58	OsPUB58	PLANT U-BOX-CONTAINING PROTEIN 58	plant U-box-containing protein 58, U-box protein 58, U-box-type E3 ubiquitin ligase 58	PLANT U-BOX-CONTAINING PROTEIN 58		10	class IV PUB protein (Kinase + U-box). 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0548850	LOC_Os10g40120.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
17850	RLCK111	OsPUB59, PUB59, OsRLCK111, OsPUB59, PUB59	RECEPTOR-LIKE CYTOPLASMIC KINASE 111	plant U-box-containing protein 59, U-box protein 59, Receptor-like Cytoplasmic Kinase 111, U-box-type E3 ubiquitin ligase 59	RECEPTOR-LIKE CYTOPLASMIC KINASE 111		3	class IV PUB protein (Kinase + U-box). 	 Biochemical character	Os03g0423700	LOC_Os03g31000.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0000151 - ubiquitin ligase complex		
17851	PUB60	OsPUB60, UCIP6, OsUCIP6, OsPUB60, PUB60	PLANT U-BOX-CONTAINING PROTEIN 60	plant U-box-containing protein 60, U-box protein 60, OsUBC26 Interact Protein 6, U-box-type E3 ubiquitin ligase 60	PLANT U-BOX-CONTAINING PROTEIN 60		2	class IV PUB protein (Kinase + U-box). 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0665400	LOC_Os02g44599.4, LOC_Os02g44599.3, LOC_Os02g44599.1, LOC_Os02g44599.2				GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
17852	RLCK285	OsPUB61, PUB61, OsRLCK285, OsUSP35, USP35, OsPUB61, PUB61	RECEPTOR-LIKE CYTOPLASMIC KINASE 285	plant U-box-containing protein 61, U-box protein 61, Receptor-like Cytoplasmic Kinase 285, universal stress protein 35, U-box-type E3 ubiquitin ligase 61	RECEPTOR-LIKE CYTOPLASMIC KINASE 285		10	class IV PUB protein (Kinase + U-box). EST: CB648412.	 Seed,  Reproductive organ - panicle,  Biochemical character	Os10g0100500	LOC_Os10g01060.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009010 - seed 
17853	RLCK91	OsPUB62, PUB62, OsRLCK91, OsPUB62, PUB62	RECEPTOR-LIKE CYTOPLASMIC KINASE 91	plant U-box-containing protein 62, U-box protein 62, Receptor-like Cytoplasmic Kinase 91, U-box-type E3 ubiquitin ligase 62	RECEPTOR-LIKE CYTOPLASMIC KINASE 91		2	class IV PUB protein (Kinase + U-box). EST: BQ908820.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0822900	LOC_Os02g57700.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009651 - response to salt stress, GO:0000151 - ubiquitin ligase complex, GO:0009609 - response to symbiotic bacterium, GO:0004842 - ubiquitin-protein ligase activity	TO:0006001 - salt tolerance	
17854	PUB63	OsPUB63, OsPUB63, PUB63	PLANT U-BOX-CONTAINING PROTEIN 63	plant U-box-containing protein 63, U-box protein 63, U-box-type E3 ubiquitin ligase 63	PLANT U-BOX-CONTAINING PROTEIN 63		6	class VII PUB protein (TPR + U-box). Q2RAD9. EST: CA758128, CF294635, CF294636, CF306389, CF305746, CF303031, CF303481, C73147, CA765281, AU075414. OsSUF4 target gene (Liu et al. 2019).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0159900	LOC_Os06g06490.1, LOC_Os06g06490.3, LOC_Os06g06490.2				GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0007623 - circadian rhythm, GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
17855	PUB64	OsPUB64, OsHOP1, HOP1, OsPUB64, PUB64	PLANT U-BOX-CONTAINING PROTEIN 64	plant U-box-containing protein 64, U-box protein 64, Hsp70-Hsp90 organizing protein 1, U-box-type E3 ubiquitin ligase 64	PLANT U-BOX-CONTAINING PROTEIN 64		6	class VII PUB protein (TPR + U-box). EST: CB669618, CB669619, CB666007, CB666008, CB655998, CB655999, CB656035, CB656036, AU068890, CB651921, CB651922, CB662541, CB662542, CB659153, CB659154, CB673778, CB649572, CB672550, CA762292, CA763973, AU068891, BI807157, AU078129, CA999626, C20397, C50849.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0159600	LOC_Os06g06470.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
17856	PUB65	OsPUB65, OsPUB65, PUB65	PLANT U-BOX-CONTAINING PROTEIN 65	plant U-box-containing protein 65, U-box protein 65, U-box-type E3 ubiquitin ligase 65	PLANT U-BOX-CONTAINING PROTEIN 65		6	class VII PUB protein (TPR + U-box). 	 Biochemical character	Os06g0159400	LOC_Os06g06450.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17857	PUB66	OsPUB66	PLANT U-BOX-CONTAINING PROTEIN 66	plant U-box-containing protein 66, U-box protein 66, U-box-type E3 ubiquitin ligase 66	PLANT U-BOX-CONTAINING PROTEIN 66		5	class VII PUB protein (TPR + U-box). 	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0104900	LOC_Os05g01460.1, LOC_Os05g01460.2, LOC_Os05g01460.3, LOC_Os05g01460.5				GO:0009651 - response to salt stress, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
17858	PUB67	OsPUB67	PLANT U-BOX-CONTAINING PROTEIN 67	plant U-box-containing protein 67, U-box protein 67, U-box-type E3 ubiquitin ligase 67	PLANT U-BOX-CONTAINING PROTEIN 67		10	class VII PUB protein (TPR + U-box). EST: CA759007, CA759008.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0552400	LOC_Os10g40490.1				GO:0000151 - ubiquitin ligase complex, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0004842 - ubiquitin-protein ligase activity	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
17859	PUB68	OsPUB68, OsPUB68, PUB68	PLANT U-BOX-CONTAINING PROTEIN 68	plant U-box-containing protein 68, U-box protein 68, U-box-type E3 ubiquitin ligase 68	PLANT U-BOX-CONTAINING PROTEIN 68		8	class VII PUB protein (TPR + U-box). EST: AU081544.	 Biochemical character	Os08g0113300	LOC_Os08g02140.2, LOC_Os08g02140.3				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17860	PUB69	OsPUB69, OsPUB69, PUB69	PLANT U-BOX-CONTAINING PROTEIN 69	plant U-box-containing protein 69, U-box protein 69, U-box-type E3 ubiquitin ligase 69	PLANT U-BOX-CONTAINING PROTEIN 69		8	class V PUB protein (U-box only). 	 Biochemical character	Os08g0235400	LOC_Os08g13780.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17861	RLCK197	OsPUB70, PUB70, OsRLCK197, UCIP19, OsUCIP19, OsPUB70, PUB70, OsBSK5, BSK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 197	plant U-box-containing protein 70, U-box protein 70, Receptor-like Cytoplasmic Kinase 197, OsUBC26 Interact Protein 19, U-box-type E3 ubiquitin ligase 70, BR-signalling kinase 5, brassinosteroid-signaling kinase 5	RECEPTOR-LIKE CYTOPLASMIC KINASE 197	ospub70	6	class VIII PUB protein (TPR + Kinase + U-box). EST: CB684359, CB684360, CB661779, BI812595, BI811980. U-box type ubiquitin E3 ligase.	 Tolerance and resistance - Stress tolerance,  Seed,  Tolerance and resistance - Disease resistance,  Biochemical character,  Reproductive organ - panicle	Os06g0163000	LOC_Os06g06760.1, LOC_Os06g06760.2, LOC_Os06g06760.3				GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0010229 - inflorescence development, GO:0009751 - response to salicylic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0004842 - ubiquitin-protein ligase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0000151 - ubiquitin ligase complex	TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity, TO:0000653 - seed development trait	PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
17862	PUB73	OsPUB73	PLANT U-BOX-CONTAINING PROTEIN 73	plant U-box-containing protein 73, U-box protein 73, U-box-type E3 ubiquitin ligase 73	PLANT U-BOX-CONTAINING PROTEIN 73	ospub73, ospub73-1, ospub73-2	2	class V PUB protein (U-box only). Q6K762.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os02g0490000	LOC_Os02g28870.1				GO:0031349 - positive regulation of defense response, GO:0010584 - pollen exine formation, GO:0048656 - tapetal layer formation, GO:0000151 - ubiquitin ligase complex, GO:0048653 - anther development, GO:0045732 - positive regulation of protein catabolic process, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0005737 - cytoplasm, GO:0051321 - meiotic cell cycle, GO:0009555 - pollen development, GO:0048658 - tapetal layer development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000437 - male sterility, TO:0000276 - drought tolerance, TO:0000053 - pollen sterility, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000455 - seed set percent, TO:0000074 - blast disease	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
17863	PUB74	OsPUB74, OsPUB74, PUB74	PLANT U-BOX-CONTAINING PROTEIN 74	plant U-box-containing protein 74, U-box protein 74, U-box-type E3 ubiquitin ligase 74	PLANT U-BOX-CONTAINING PROTEIN 74		6	class V PUB protein (U-box only). EST: CB633820, CB633821, CA305715.	 Biochemical character	Os06g0480000	LOC_Os06g28590.1, LOC_Os06g28590.2, LOC_Os06g28590.3				GO:0004842 - ubiquitin-protein ligase activity, GO:0000151 - ubiquitin ligase complex		
17864	PUB76	OsPUB76, OsPUB76, PUB76	PLANT U-BOX-CONTAINING PROTEIN 76	plant U-box-containing protein 76, U-box protein 76, U-box-type E3 ubiquitin ligase 76	PLANT U-BOX-CONTAINING PROTEIN 76		4	class V PUB protein (U-box only). 	 Biochemical character	Os04g0373200	LOC_Os04g30470.1				GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17865	PUB77	OsPUB77, OsEnS-73, OsPUB77, PUB77	PLANT U-BOX-CONTAINING PROTEIN 77	plant U-box-containing protein 77, U-box protein 77, endosperm-specific gene 73, U-box-type E3 ubiquitin ligase 77	PLANT U-BOX-CONTAINING PROTEIN 77		4	class V PUB protein (U-box only). 	 Biochemical character	Os04g0584500	LOC_Os04g49500.1				GO:0007623 - circadian rhythm, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity		
17866	FLO6	OsSIP4, SIP4, OsFLO6, OsSFq3, SFq3	FLOURY ENDOSPERM 6	FLOURY ENDOSPERM6, SKIP interacting protein 4, SKIPa-interacting protein 4, SKIPa-interacting protein 4		flo6	3	EU368694. a CBM48 (carbohydrate-binding module 48) domain-containing protein. FLO6 is a novel factor required for starch biosynthesis and compound granule formation in rice seeds (Peng et al. 2014). GO:0062052: starch granule initiation. GO:2001070: starch binding.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Physiological traits - Storage substances	Os03g0686900	LOC_Os03g48170.1				GO:0007165 - signal transduction, GO:0009507 - chloroplast, GO:0009536 - plastid, GO:0019252 - starch biosynthetic process, GO:0009408 - response to heat, GO:0009501 - amyloplast	TO:0000259 - heat tolerance, TO:0000696 - starch content, TO:0000180 - spikelet fertility, TO:0000162 - seed quality	PO:0009066 - anther , PO:0009089 - endosperm , PO:0025034 - leaf 
17867	_	RBS1, Rbs1	_	RNA-binding and SPIN1-interacting 1, RNA-binding and SPIN1-interacting1			11	LOC_Os11g14430. Component involved in SPL11/SPIN1-mediated flowering.	 Reproductive organ - Heading date	Os11g0250000	LOC_Os11g14430.1, LOC_Os11g14430.2				GO:0000166 - nucleotide binding, GO:2000028 - regulation of photoperiodism, flowering, GO:0003723 - RNA binding, GO:0003676 - nucleic acid binding	TO:0002616 - flowering time	
17868	PYL/RCAR5	OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 5	pyrabactin resistance-like 5, PYR1-like 11, pyrabactin resistance 1-like 11	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 5		5	cytosolic ABA receptor.Q6I5C3. TO:0000905: seed yield. OsPYL11 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. GO:0038023: signaling receptor activity. GO:1905183: negative regulation of protein serine/threonine phosphatase activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. GO:0090351: seedling development.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os05g0213500	LOC_Os05g12260.1				GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009845 - seed germination, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0010427 - abscisic acid binding, GO:0051707 - response to other organism, GO:0009724 - detection of abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000207 - plant height	PO:0025034 - leaf 
17869	PYL/RCAR13	OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 1	pyrabactin resistance-like 1, PYR1-like 4, pyrabactin resistance 1-like 4	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 1	pyl4	1	cytosolic ABA receptor. OsPYL4 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. GO:1904583: response to polyamine macromolecule.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os01g0827800	LOC_Os01g61210.1				GO:0005829 - cytosol, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009737 - response to abscisic acid stimulus, GO:0009415 - response to water, GO:0010427 - abscisic acid binding, GO:0004872 - receptor activity, GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0045926 - negative regulation of growth, GO:0005737 - cytoplasm	TO:0000447 - filled grain number, TO:0000615 - abscisic acid sensitivity, TO:0000237 - water stress trait	PO:0009005 - root 
17870	PYL/RCAR2	OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 2	pyrabactin resistance-like 2, PYR1-like 3, pyrabactin resistance 1-like 3	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 2	pyl3	2	cytosolic ABA receptor OsPYL3 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Tolerance and resistance - Stress tolerance	Os02g0226801	LOC_Os02g13330.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0010427 - abscisic acid binding, GO:0009724 - detection of abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
17871	PYL/RCAR3	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 3	pyrabactin resistance-like 3, PYR1-like 10, pyrabactin resistance 1-like 10	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 3	pyl10	2	cytosolic ABA receptor. Q6EN42. FN556370. KF925265. OsPYL10 in He et al. 2014, Miao et al. 2018, Verma et al. 2019, Miao et al. 2020, Song et al. 2022. OsRCAR1 in Wang et al. 2017. GO:0038023: signaling receptor activity. GO:1905183: negative regulation of protein serine/threonine phosphatase activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. GO:0090333: regulation of stomatal closure. TO:0020095: stomatal process related trait.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0255500	LOC_Os02g15640.1				GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009408 - response to heat, GO:0005829 - cytosol, GO:0046345 - abscisic acid catabolic process, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009724 - detection of abscisic acid stimulus, GO:0009687 - abscisic acid metabolic process, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010118 - stomatal movement, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0010427 - abscisic acid binding, GO:0009845 - seed germination	TO:0000095 - osmotic response sensitivity, TO:0000495 - chlorophyll content, TO:0000259 - heat tolerance, TO:0000136 - relative water content, TO:0000467 - cell membrane stability, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0002667 - abscisic acid content	PO:0009005 - root , PO:0009006 - shoot system , PO:0025034 - leaf 
17872	PYL/RCAR4	OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 4	pyrabactin resistance-like 4, PYR1-like 6, pyrabactin resistance 1-like 6	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 4	pyl6	3	cytosolic ABA receptor. OsPYL6 in He et al. 2014, Miao et al. 2018, Miao et al. 2020, Santosh et al. 2021. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. GO:1902265: abscisic acid homeostasis.TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Reproductive organ - Panicle, Mode of branching,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Coloration - Chlorophyll,  Vegetative organ - Root	Os03g0297600	LOC_Os03g18600.1				GO:2000033 - regulation of seed dormancy, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009415 - response to water, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009409 - response to cold, GO:0009845 - seed germination, GO:0030104 - water homeostasis, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0010118 - stomatal movement, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0010427 - abscisic acid binding, GO:0045926 - negative regulation of growth	TO:0000576 - stem length, TO:0002667 - abscisic acid content, TO:0000040 - panicle length, TO:0000227 - root length, TO:0000457 - total biomass yield, TO:0000276 - drought tolerance, TO:0000050 - inflorescence branching, TO:0000143 - relative biomass, TO:0000495 - chlorophyll content, TO:0000095 - osmotic response sensitivity, TO:0000180 - spikelet fertility, TO:0000615 - abscisic acid sensitivity, TO:0000136 - relative water content, TO:0000357 - growth and development trait, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000253 - seed dormancy, TO:0006001 - salt tolerance, TO:0000237 - water stress trait, TO:0000153 - relative yield, TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000547 - primary branch number, TO:0000605 - hydrogen peroxide content	PO:0007057 - 0 seed germination stage , PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0009005 - root 
17873	PYL/RCAR6	OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 6	pyrabactin resistance-like 6, PYR1-like 5, pyrabactin resistance 1-like 5	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 6	pyl5	5	cytosolic ABA receptor. OsPYL5 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Tolerance and resistance - Stress tolerance	Os05g0473000	LOC_Os05g39580.1				GO:0005634 - nucleus, GO:0009415 - response to water, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0010427 - abscisic acid binding, GO:0009738 - abscisic acid mediated signaling, GO:0005829 - cytosol, GO:0005737 - cytoplasm	TO:0000237 - water stress trait	
17874	PYL/RCAR7	OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90, RCAR1, OsRCAR1	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7	endosperm-specific gene 90, pyrabactin resistance-like 7, PYR1-like 8, pyrabactin resistance 1-like 8	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7	pyl8	6	cytosolic ABA receptor. OsPYL8 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os06g0527800	LOC_Os06g33640.2, LOC_Os06g33640.1				GO:0042542 - response to hydrogen peroxide, GO:0009845 - seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0010427 - abscisic acid binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0009010 - seed 
17875	PYL/RCAR8	OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 8	pyrabactin resistance-like 8, PYR1-like 9, pyrabactin resistance 1-like 9	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 8	pyl9	6	cytosolic ABA receptor. OsPYL9 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os06g0528300	LOC_Os06g33690.1				GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0010427 - abscisic acid binding, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009738 - abscisic acid mediated signaling		PO:0009009 - plant embryo 
17876	PYL/RCAR9	OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 9	pyrabactin resistance-like 9, PYR1-like 2, pyrabactin resistance 1-like 2	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 9	pyl2	6	cytosolic ABA receptor. Q5Z8S0. PDB ID:4OIC. OsPYL2 in He et al. 2014, Miao et al. 2018, Miao et al. 2020, Yuan et al. 2021, Song et al. 2022. GO:0038023: signaling receptor activity. GO:1905183: negative regulation of protein serine/threonine phosphatase activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. GO:1904276: regulation of wax biosynthetic process. TO:0020109: vascular bundle development trait. GO:0090333: regulation of stomatal closure. TO:0020095: stomatal process related trait.	 Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os06g0562200	LOC_Os06g36670.1				GO:0010427 - abscisic acid binding, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0002213 - defense response to insect, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009845 - seed germination, GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0030104 - water homeostasis, GO:0010118 - stomatal movement, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010025 - wax biosynthetic process, GO:0010119 - regulation of stomatal movement, GO:0042752 - regulation of circadian rhythm, GO:0042803 - protein homodimerization activity, GO:0005829 - cytosol	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000276 - drought tolerance, TO:0000470 - vascular tissue related trait, TO:0000709 - leaf gloss, TO:0000522 - stomatal conductance, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0002667 - abscisic acid content, TO:0000396 - grain yield, TO:0000615 - abscisic acid sensitivity	
17877	PYL/RCAR10	OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1, R10, OsPYL/R10	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 10	pyrabactin resistance-like 10, PYR1-like 1, pyrabactin resistance 1-like 1		pyl1	10	cytosolic ABA receptor. Q7XBY6. OsPYL1 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. PYL1 and OsPLY10 in Long et al. 2023. GO:0038023: signaling receptor activity. GO:1905183: negative regulation of protein serine/threonine phosphatase activity. GO:0080163: regulation of protein serine/threonine phosphatase activity. 	 Seed - Physiological traits - Dormancy,  Character as QTL - Germination	Os10g0573400	LOC_Os10g42280.1				GO:0045926 - negative regulation of growth, GO:0010029 - regulation of seed germination, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0010427 - abscisic acid binding, GO:0004872 - receptor activity, GO:0005829 - cytosol, GO:0042803 - protein homodimerization activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:2000033 - regulation of seed dormancy, GO:0048623 - seed germination on parent plant	TO:0000253 - seed dormancy	PO:0009005 - root , PO:0007057 - 0 seed germination stage , PO:0008039 - stem base 
17878	PP2C49	OsPP2C49, OsPP76, PP76	PROTEIN PHOSPHATASE 2C49	protein phosphatase 2C49, protein phosphatase 2C 49, protein phosphatase 76	PROTEIN PHOSPHATASE 2C49	ospp2c49	5	Q65XG6. an ABI1 homolog.	 Tolerance and resistance - Stress tolerance	Os05g0457200	LOC_Os05g38290.1, LOC_Os05g38290.2				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
17879	PP2C30	OsPP2C30, OsPP48, PP48	PROTEIN PHOSPHATASE 2C30	protein phosphatase 2C30, protein phosphatase 2C 30, protein phosphatase 48	PROTEIN PHOSPHATASE 2C30		3	Q84JI0. GO:1902039: negative regulation of seed dormancy process. OsPP2C30 in Min et al. 2021.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os03g0268600	LOC_Os03g16170.1, LOC_Os03g16170.2				GO:0046688 - response to copper ion, GO:0005794 - Golgi apparatus, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0009658 - chloroplast organization, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0080134 - regulation of response to stress, GO:0046872 - metal ion binding, GO:0010119 - regulation of stomatal movement, GO:0010150 - leaf senescence, GO:0006470 - protein amino acid dephosphorylation, GO:0010360 - negative regulation of anion channel activity, GO:0033106 - cis-Golgi network membrane, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0048838 - release of seed from dormancy, GO:0010118 - stomatal movement, GO:0005829 - cytosol, GO:0010030 - positive regulation of seed germination, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000095 - osmotic response sensitivity, TO:0000021 - copper sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
17880	PP2C1	OsPP2C01, PP2C01, OsPP2C1, OsPP1, OsPBCP, PBCP	PROTEIN PHOSPHATASE 2C1	protein phosphatase 2C01, protein phosphatase 2C 01, protein phosphatase 2C1, protein phosphatase 2C 1, protein phosphatase 1, PHOTOSYSTEM II CORE PHOSPHATASE	PROTEIN PHOSPHATASE 2C1		1	Q942P9. GO:0071482: cellular response to light stimulus. GO:0035970: thylakoid membrane organization. GO:0035970: peptidyl-threonine dephosphorylation. the rice ortholog of AtPBCP	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0164600	LOC_Os01g07090.1				GO:0042549 - photosystem II stabilization, GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0009570 - chloroplast stroma, GO:0009644 - response to high light intensity	TO:0000075 - light sensitivity	
17881	PP2C2	OsPP2C02, PP2C02, OsPP2C2, OsPP2	PROTEIN PHOSPHATASE 2C2	protein phosphatase 2C02, protein phosphatase 2C 02, protein phosphatase 2C2, protein phosphatase 2C 2, protein phosphatase 2	PROTEIN PHOSPHATASE 2C2		1	Q9FYN7.		Os01g0295700	LOC_Os01g19130.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0004721 - phosphoprotein phosphatase activity		
17882	ABI2	OsPP2C03, PP2C03, OsPP2C3, PP2C3, OsPP7, OsABI2	ABA INSENSITIVE 2	protein phosphatase 2C03, protein phosphatase 2C 03, protein phosphatase 2C3, protein phosphatase 2C 3, protein phosphatase 7	PROTEIN PHOSPHATASE 2C3		1	Q0JMD4.		Os01g0513100	LOC_Os01g32964.1				GO:0009737 - response to abscisic acid stimulus, GO:0046872 - metal ion binding, GO:0009738 - abscisic acid mediated signaling, GO:0004721 - phosphoprotein phosphatase activity	TO:0000615 - abscisic acid sensitivity	
17883	PP2C4	OsPP2C04, PP2C04, OsPP2C4, OsPP8	PROTEIN PHOSPHATASE 2C4	protein phosphatase 2C04, protein phosphatase 2C 04, protein phosphatase 2C4, protein phosphatase 2C 4, protein phosphatase 8	PROTEIN PHOSPHATASE 2C4		1	Q5JJY4.		Os01g0541900	LOC_Os01g36080.1, LOC_Os01g36080.2, LOC_Os01g36080.3, LOC_Os01g36080.4				GO:0046872 - metal ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0004721 - phosphoprotein phosphatase activity		
17884	PP2C5	OsPP2C05, PP2C05, OsPP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38	PROTEIN PHOSPHATASE 2C5	protein phosphatase 2C05, protein phosphatase 2C 05, protein phosphatase 2C5, protein phosphatase 2C 5, protein phosphatase 9	PROTEIN PHOSPHATASE 2C5	pph1, pph1/tap38, tap38	1	Q5JKN1.	 Biochemical character	Os01g0552300	LOC_Os01g37130.1, LOC_Os01g37130.2				GO:0004722 - protein serine/threonine phosphatase activity, GO:0009579 - thylakoid, GO:0009767 - photosynthetic electron transport chain, GO:0005730 - nucleolus, GO:0080005 - photosystem stoichiometry adjustment, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0009570 - chloroplast stroma		
17885	PP2C7	OsPP2C07, PP2C07, OsPP2C7, OsPP11, PP11	PROTEIN PHOSPHATASE 2C7	protein phosphatase 2C07, protein phosphatase 2C 07, protein phosphatase 2C7, protein phosphatase 2C 7, protein phosphatase 11	PROTEIN PHOSPHATASE 2C7		1	Q0JL75.	 Tolerance and resistance - Stress tolerance	Os01g0618200	LOC_Os01g43100.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0009409 - response to cold, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000303 - cold tolerance	
17886	PP2C8	OsPP2C08, PP2C08, OsPP2C8, OsPP12	PROTEIN PHOSPHATASE 2C8	protein phosphatase 2C08, protein phosphatase 2C 08, protein phosphatase 2C8, protein phosphatase 2C 8, protein phosphatase 12	PROTEIN PHOSPHATASE 2C8		1	Q5SN75. OsPP2C8 was thought to be the most likely candidate gene for confer- ring salinity tolerance in the seedling stage in CMG (Sun et al. 2019).	 Vegetative organ - Culm,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0656200	LOC_Os01g46760.1				GO:0006970 - response to osmotic stress, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0009651 - response to salt stress, GO:0080006 - internode patterning, GO:0002213 - defense response to insect, GO:0009753 - response to jasmonic acid stimulus, GO:0030307 - positive regulation of cell growth, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000095 - osmotic response sensitivity, TO:0000424 - brown planthopper resistance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000576 - stem length, TO:0000145 - internode length	PO:0020141 - stem node , PO:0009046 - flower , PO:0020104 - leaf sheath , PO:0020142 - stem internode , PO:0009006 - shoot system 
17887	PP2C10	OsPP2C10, OsPP18	PROTEIN PHOSPHATASE 2C10	protein phosphatase 2C10, protein phosphatase 2C 10, Protein Phosphatase18	PROTEIN PHOSPHATASE 2C10	ospp18	2	Q67UX7. OsPP18 in You et al. 2014. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os02g0149800	LOC_Os02g05630.4, LOC_Os02g05630.3, LOC_Os02g05630.2, LOC_Os02g05630.1				GO:0046872 - metal ion binding, GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane, GO:0006470 - protein amino acid dephosphorylation, GO:0009751 - response to salicylic acid stimulus, GO:0004722 - protein serine/threonine phosphatase activity, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress	
17888	PP2C11	OsPP2C11, OsPP19	PROTEIN PHOSPHATASE 2C11	protein phosphatase 2C11, protein phosphatase 2C 11, protein phosphatase 19	PROTEIN PHOSPHATASE 2C11		2	Q6ETK3.		Os02g0180000	LOC_Os02g08364.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0004722 - protein serine/threonine phosphatase activity		
17889	PP2C12	OsPP2C12, OsPP21	PROTEIN PHOSPHATASE 2C12	protein phosphatase 2C12, protein phosphatase 2C 12, protein phosphatase 21	PROTEIN PHOSPHATASE 2C12		2	Q6Z8B9.		Os02g0224100	LOC_Os02g13100.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17890	PP2C14	OsPP2C14, OsPP24	PROTEIN PHOSPHATASE 2C14	protein phosphatase 2C14, protein phosphatase 2C 14, protein phosphatase 24	PROTEIN PHOSPHATASE 2C14		2	Q6K6N7.		Os02g0471500	LOC_Os02g27220.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17891	PP2C15	OsPP2C15, OsPP25	PROTEIN PHOSPHATASE 2C15	protein phosphatase 2C15, protein phosphatase 2C 15, protein phosphatase 25	PROTEIN PHOSPHATASE 2C15		2	Q6YTI2.		Os02g0567200	LOC_Os02g35910.1				GO:0005829 - cytosol, GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17892	PP2C16	OsPP2C16, OsPP26	PROTEIN PHOSPHATASE 2C16	protein phosphatase 2C16, protein phosphatase 2C 16, protein phosphatase 26	PROTEIN PHOSPHATASE 2C16		2	Q6K1U4.		Os02g0599150	LOC_Os02g38580.1				GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding		
17893	PP2C17	OsPP2C17, OsPP27	PROTEIN PHOSPHATASE 2C17	protein phosphatase 2C17, protein phosphatase 2C 17, protein phosphatase 27	PROTEIN PHOSPHATASE 2C17		2	Q6K1U0.		Os02g0599151	LOC_Os02g38690.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17894	PP2C18	OsPP2C18, OsPP28	PROTEIN PHOSPHATASE 2C18	protein phosphatase 2C18, protein phosphatase 2C 18, protein phosphatase 28	PROTEIN PHOSPHATASE 2C18		2	A3A8Q4.		Os02g0599200	LOC_Os02g38710.1				GO:0016021 - integral to membrane, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17895	PP2C19	OsPP2C19, OsPP29	PROTEIN PHOSPHATASE 2C19	protein phosphatase 2C19, protein phosphatase 2C 19, protein phosphatase 29	PROTEIN PHOSPHATASE 2C19		2	Q0DZT4.		Os02g0599700	LOC_Os02g38780.1, LOC_Os02g38780.2, LOC_Os02g38780.3				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17896	PP2C20	OsPP2C20, OsPP30	PROTEIN PHOSPHATASE 2C20	protein phosphatase 2C20, protein phosphatase 2C 20, protein phosphatase 30	PROTEIN PHOSPHATASE 2C20		2	Q6K5I0.		Os02g0600033	LOC_Os02g38804.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17897	PP2C21	OsPP2C21, OsPP31	PROTEIN PHOSPHATASE 2C21	protein phosphatase 2C21, protein phosphatase 2C 21, protein phosphatase 31	PROTEIN PHOSPHATASE 2C21		2	A3A8W2.		Os02g0606900	LOC_Os02g39410.1, LOC_Os02g39410.2, LOC_Os02g39410.3				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17898	PP2C22	OsPP2C22, OsPP33	PROTEIN PHOSPHATASE 2C22	protein phosphatase 2C22, protein phosphatase 2C 22, protein phosphatase 33	PROTEIN PHOSPHATASE 2C22		2	A3A8W6.		Os02g0607500	LOC_Os02g39480.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
17899	PP2C23	OsPP2C23, OsPP34	PROTEIN PHOSPHATASE 2C23	protein phosphatase 2C23, protein phosphatase 2C 23, protein phosphatase 34	PROTEIN PHOSPHATASE 2C23		2	Q6H7J4.		Os02g0633700	LOC_Os02g42250.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17900	PP2C24	OsPP2C24, OsPP35	PROTEIN PHOSPHATASE 2C24	protein phosphatase 2C24, protein phosphatase 2C 24, protein phosphatase 35	PROTEIN PHOSPHATASE 2C24		2	Q6H7J3.		Os02g0633900	LOC_Os02g42270.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17901	PP2C25	OsPP2C25, OsPP36, PP36	PROTEIN PHOSPHATASE 2C25	protein phosphatase 2C25, protein phosphatase 2C 25, protein phosphatase 36	PROTEIN PHOSPHATASE 2C25		2	Q6ZHC8.		Os02g0685600	LOC_Os02g46080.1, LOC_Os02g46080.2				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17902	PP2C26	OsPP2C26, OsPP37	PROTEIN PHOSPHATASE 2C26	protein phosphatase 2C26, protein phosphatase 2C 26, protein phosphatase 37	PROTEIN PHOSPHATASE 2C26		2	Q6ZGY0.		Os02g0690500	LOC_Os02g46490.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0010074 - maintenance of meristem identity, GO:0009933 - meristem structural organization, GO:0009826 - unidimensional cell growth, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005886 - plasma membrane, GO:0005543 - phospholipid binding, GO:0046872 - metal ion binding		
17903	PP2C27	OsPP2C27, OsPP40	PROTEIN PHOSPHATASE 2C27	protein phosphatase 2C27, protein phosphatase 2C 27, protein phosphatase 40	PROTEIN PHOSPHATASE 2C27		2	Q69QZ0.	 Tolerance and resistance - Stress tolerance	Os02g0799000	LOC_Os02g55560.1, LOC_Os02g55560.2				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0009409 - response to cold, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000303 - cold tolerance	
17904	PP2C28	OsPP2C28, OsPP43	PROTEIN PHOSPHATASE 2C28	protein phosphatase 2C28, protein phosphatase 2C 28, protein phosphatase 43	PROTEIN PHOSPHATASE 2C28		3	Q10S32.		Os03g0137200	LOC_Os03g04430.1, LOC_Os03g04430.2, LOC_Os03g04430.3				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
17905	PP2C29	OsPP2C29, OsPP46	PROTEIN PHOSPHATASE 2C29	protein phosphatase 2C29, protein phosphatase 2C 29, protein phosphatase 46	PROTEIN PHOSPHATASE 2C29		3	Q8H063.		Os03g0207400	LOC_Os03g10950.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17906	PP2C31	OsPP2C31, OsPP49	PROTEIN PHOSPHATASE 2C31	protein phosphatase 2C31, protein phosphatase 2C 31, protein phosphatase 49	PROTEIN PHOSPHATASE 2C31		3	Q10NB9.		Os03g0275100	LOC_Os03g16760.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17907	PP2C32	OsPP2C32, OsPP50	PROTEIN PHOSPHATASE 2C32	protein phosphatase 2C32, protein phosphatase 2C 32, protein phosphatase 50	PROTEIN PHOSPHATASE 2C32		3	Q10MX1.		Os03g0292100	LOC_Os03g18150.1				GO:0010440 - stomatal lineage progression, GO:0009738 - abscisic acid mediated signaling, GO:0004722 - protein serine/threonine phosphatase activity, GO:0005634 - nucleus, GO:0006470 - protein amino acid dephosphorylation, GO:0009536 - plastid, GO:0009611 - response to wounding, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus		
17908	PP2C33	OsPP2C33, OsPP51	PROTEIN PHOSPHATASE 2C33	protein phosphatase 2C33, protein phosphatase 2C 33, protein phosphatase 51	PROTEIN PHOSPHATASE 2C33		3	Q10MN6.		Os03g0301700	LOC_Os03g18970.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17909	PP2C34	OsPP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c	PROTEIN PHOSPHATASE 2C34	protein phosphatase 2C34, protein phosphatase 2C 34, protein phosphatase 55, BTH-induced protein phosphatase 2C 2	PROTEIN PHOSPHATASE 2C34		3	BI118738, BI118739. Q94H98. miR399b-target. OsBIPP2C2 in Hu et al. 2009.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0761100	LOC_Os03g55320.1, LOC_Os03g55320.2, LOC_Os03g55320.3				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17910	PP2C36	OsPP2C36, OsPP60	PROTEIN PHOSPHATASE 2C36	protein phosphatase 2C36, protein phosphatase 2C 36, protein phosphatase 60	PROTEIN PHOSPHATASE 2C36		3	Q7Y138.		Os03g0832400	LOC_Os03g61690.1, LOC_Os03g61690.2				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17911	PP2C37	OsPP2C37, OsPP61	PROTEIN PHOSPHATASE 2C37	protein phosphatase 2C37, protein phosphatase 2C 37 protein phosphatase 61	PROTEIN PHOSPHATASE 2C37		4	LOC_Os04g08560. Q7XP01.		Os04g0167900					GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17912	PP2C38	OsPP2C38, OsPP63	PROTEIN PHOSPHATASE 2C38	protein phosphatase 2C38, protein phosphatase 2C 38, protein phosphatase 63	PROTEIN PHOSPHATASE 2C38		4	Q7XW27.		Os04g0321800	LOC_Os04g25570.1				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0004721 - phosphoprotein phosphatase activity		
17913	PP2C39	OsPP2C39, OsPP64	PROTEIN PHOSPHATASE 2C39	protein phosphatase 2C39, protein phosphatase 2C 39, protein phosphatase 64	PROTEIN PHOSPHATASE 2C39		4	Q7XVF9.		Os04g0403701	LOC_Os04g33080.1, LOC_Os04g33080.2, LOC_Os04g33080.3				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17914	PP2C40	OsPP2C40, OsPP65, PP65	PROTEIN PHOSPHATASE 2C40	protein phosphatase 2C40, protein phosphatase 2C 40, protein phosphatase 65	PROTEIN PHOSPHATASE 2C40		4	Q7XTC7. GO:1901001: negative regulation of response to salt stress. GO:1900091: regulation of raffinose biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os04g0449400	LOC_Os04g37660.1, LOC_Os04g37660.2				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0080091 - regulation of raffinose metabolic process, GO:0010325 - raffinose family oligosaccharide biosynthetic process, GO:0009651 - response to salt stress, GO:0047484 - regulation of response to osmotic stress, GO:0006970 - response to osmotic stress, GO:0030104 - water homeostasis	TO:0000615 - abscisic acid sensitivity, TO:0006004 - raffinose content, TO:0000307 - hexose content, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0006001 - salt tolerance, TO:0000566 - stomatal frequency, TO:0000095 - osmotic response sensitivity, TO:0002667 - abscisic acid content, TO:0000303 - cold tolerance	PO:0025034 - leaf 
17915	PP2C41	OsPP2C41, OsPP66	PROTEIN PHOSPHATASE 2C41	protein phosphatase 2C41, protein phosphatase 2C 41, protein phosphatase 66	PROTEIN PHOSPHATASE 2C41		4	Q7XQU7.		Os04g0452000	LOC_Os04g37904.1, LOC_Os04g37904.2				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0005886 - plasma membrane		
17916	PP2C42	OsPP2C42, OsPP67	PROTEIN PHOSPHATASE 2C42	protein phosphatase 2C42, protein phosphatase 2C 42, protein phosphatase 67	PROTEIN PHOSPHATASE 2C42		4	Q7XU84.		Os04g0500900	LOC_Os04g42260.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17917	PP2C43	OsPP2C43, OsPP68	PROTEIN PHOSPHATASE 2C43	protein phosphatase 2C43, protein phosphatase 2C 43, protein phosphatase 68	PROTEIN PHOSPHATASE 2C43		4	Q7XUC5.		Os04g0584300	LOC_Os04g49490.1, LOC_Os04g49490.2				GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
17918	PP2C44	OsPP2C44, OsPP69	PROTEIN PHOSPHATASE 2C44	protein phosphatase 2C44, protein phosphatase 2C 44, protein phosphatase 69	PROTEIN PHOSPHATASE 2C44		4	Q0JAA0.		Os04g0609600	LOC_Os04g52000.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0005886 - plasma membrane, GO:0046872 - metal ion binding		
17919	PP2C45	OsPP2C45, OsPP70	PROTEIN PHOSPHATASE 2C45	protein phosphatase 2C45, protein phosphatase 2C 45, protein phosphatase 70	PROTEIN PHOSPHATASE 2C45		4	Q7XR06.		Os04g0659500	LOC_Os04g56450.1, LOC_Os04g56450.2				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17920	PP2C46	OsPP2C46, OsPP71	PROTEIN PHOSPHATASE 2C46	protein phosphatase 2C46, protein phosphatase 2C 46, protein phosphatase 71	PROTEIN PHOSPHATASE 2C46		5	A3AZ89.		Os05g0111800	LOC_Os05g02110.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17921	PP2C47	OsPP2C47, OsPP72	PROTEIN PHOSPHATASE 2C47	protein phosphatase 2C47, protein phosphatase 2C 47, protein phosphatase 72	PROTEIN PHOSPHATASE 2C47		5	Q6AUQ4.		Os05g0134200	LOC_Os05g04360.1				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17922	PP2C48	OsPP2C48, OsPP75	PROTEIN PHOSPHATASE 2C48	protein phosphatase 2C48, protein phosphatase 2C 48, protein phosphatase 75	PROTEIN PHOSPHATASE 2C48		5	Q6L482.		Os05g0358500	LOC_Os05g29030.1, LOC_Os05g29030.2				GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0004721 - phosphoprotein phosphatase activity		
17923	PP2C50	OsPP2C50, OsPP78, OsABIL3, ABIL3	PROTEIN PHOSPHATASE 2C50	protein phosphatase 2C50, protein phosphatase 2C 50, protein phosphatase 78, OsABI-LIKE3, ABI-LIKE3, ABI-LIKE 3	PROTEIN PHOSPHATASE 2C50		5	Q6L5H6. the closest ortholog of AtHAB1. PDB: 5GWP (wild-type) and 5GWO (FM mutant). TO 0020095: stomatal process related trait. 		Os05g0537400	LOC_Os05g46040.2, LOC_Os05g46040.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0010119 - regulation of stomatal movement, GO:0006470 - protein amino acid dephosphorylation, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009738 - abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding, GO:0009724 - detection of abscisic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000131 - leaf water potential, TO:0000615 - abscisic acid sensitivity	PO:0000293 - guard cell 
17924	ABI1	OsPP2C51, PP2C51, OsPP79, PP79, OsABI1	ABA INSENSITIVE 1	protein phosphatase 2C51, protein phosphatase 2C 51, protein phosphatase 79	PROTEIN PHOSPHATASE 2C51		5	Q65XK7.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os05g0572700	LOC_Os05g49730.1				GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0004722 - protein serine/threonine phosphatase activity, GO:0010030 - positive regulation of seed germination, GO:0046872 - metal ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009738 - abscisic acid mediated signaling, GO:0006470 - protein amino acid dephosphorylation	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	PO:0009009 - plant embryo , PO:0007057 - 0 seed germination stage 
17925	PP2C52	OsPP2C52, OsPP80	PROTEIN PHOSPHATASE 2C52	protein phosphatase 2C52, protein phosphatase 2C 52, protein phosphatase 80	PROTEIN PHOSPHATASE 2C52		5	Q6L5C4.		Os05g0587100	LOC_Os05g50970.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17926	PP2C53	OsPP2C53, OsPP81, OsABIL2, ABIL2	PROTEIN PHOSPHATASE 2C53	protein phosphatase 2C53, protein phosphatase 2C 53, protein phosphatase 81, OsABI-LIKE2, ABI-LIKE2, ABI-LIKE 2	PROTEIN PHOSPHATASE 2C53	osabil2	5	Q6L4R7. GO:2000280: regulation of root development. GO:2000070: regulation of response to water deprivation. GO:1901001: negative regulation of response to salt stress.	 Vegetative organ - Root,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0592800	LOC_Os05g51510.2, LOC_Os05g51510.1				GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0004722 - protein serine/threonine phosphatase activity, GO:0005829 - cytosol, GO:2000038 - regulation of stomatal complex development, GO:0010119 - regulation of stomatal movement, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0048623 - seed germination on parent plant, GO:0048364 - root development, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000303 - cold tolerance, TO:0000566 - stomatal frequency, TO:0000043 - root anatomy and morphology trait, TO:0006001 - salt tolerance, TO:0000145 - internode length, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000131 - leaf water potential, TO:0002665 - root hair length	PO:0000293 - guard cell , PO:0007520 - root development stage 
17927	PP2C54	OsPP2C54, OsPP84	PROTEIN PHOSPHATASE 2C54	protein phosphatase 2C54, protein phosphatase 2C 54, protein phosphatase 84	PROTEIN PHOSPHATASE 2C54		6	Q5SMK6. GO:0061416: regulation of transcription from RNA polymerase II promoter in response to salt stress.		Os06g0179700	LOC_Os06g08140.1				GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0004722 - protein serine/threonine phosphatase activity		
17928	PP2C55	OsPP2C55, OsPP86	PROTEIN PHOSPHATASE 2C55	protein phosphatase 2C55, protein phosphatase 2C 55, protein phosphatase 86	PROTEIN PHOSPHATASE 2C55		6	Q652Z7. 		Os06g0526700	LOC_Os06g33530.1				GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation		
17929	PP2C56	OsPP2C56, OsPP87	PROTEIN PHOSPHATASE 2C56	protein phosphatase 2C56, protein phosphatase 2C 56, protein phosphatase 87	PROTEIN PHOSPHATASE 2C56		6	Q0DBU3. 		Os06g0526800	LOC_Os06g33549.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17930	PP2C57	OsPP2C57, OsPP89	PROTEIN PHOSPHATASE 2C57	protein phosphatase 2C57, protein phosphatase 2C 57, protein phosphatase 89	PROTEIN PHOSPHATASE 2C57		6	Q69VD9. 		Os06g0597200	LOC_Os06g39600.1, LOC_Os06g39600.2				GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0005829 - cytosol, GO:0050688 - regulation of defense response to virus, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
17931	PP2C58	OsPP2C58, OsPP90	PROTEIN PHOSPHATASE 2C58	protein phosphatase 2C58, protein phosphatase 2C 58, protein phosphatase 90	PROTEIN PHOSPHATASE 2C58		6	Q67UP9. 		Os06g0651600	LOC_Os06g44210.1, LOC_Os06g44210.2				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17932	PP2C59	OsPP2C59, OsPP91, PP91	PROTEIN PHOSPHATASE 2C59	protein phosphatase 2C59, protein phosphatase 2C 59, protein phosphatase 91	PROTEIN PHOSPHATASE 2C59		6	Q5Z6F5. 		Os06g0698300	LOC_Os06g48300.1				GO:0048046 - apoplast, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0046872 - metal ion binding, GO:0044419 - interspecies interaction between organisms, GO:0042742 - defense response to bacterium, GO:0006470 - protein amino acid dephosphorylation, GO:0005886 - plasma membrane, GO:0004722 - protein serine/threonine phosphatase activity	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
17933	SAL1	OsPP2C60, PP2C60, OsPP92, PP92, OsSAL1	SENSITIVE TO ALUMINUM 1	protein phosphatase 2C60, protein phosphatase 2C 60, protein phosphatase 92	PROTEIN PHOSPHATASE 2C60	sal1	6	Q5Z8P0. a PP2C.D phosphatase. TO:0000995: aluminum content trait. GO:1902602: aluminum ion transmembrane transport.	 Tolerance and resistance - Stress tolerance	Os06g0717800	LOC_Os06g50380.1, LOC_Os06g50380.2, LOC_Os06g50380.3				GO:0004722 - protein serine/threonine phosphatase activity, GO:0016021 - integral to membrane, GO:0006470 - protein amino acid dephosphorylation, GO:0010044 - response to aluminum ion, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane	TO:0000354 - aluminum sensitivity	
17934	PP2C61	OsPP2C61, OsPP93	PROTEIN PHOSPHATASE 2C61	protein phosphatase 2C61, protein phosphatase 2C 61, protein phosphatase 93	PROTEIN PHOSPHATASE 2C61		7	Q7XHN8. 		Os07g0114000	LOC_Os07g02330.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding		
17935	PP2C62	OsPP2C62, OsPP95, PP95	PROTEIN PHOSPHATASE 2C62	protein phosphatase 2C62, protein phosphatase 2C 62, protein phosphatase 95, PROTEIN PHOSPHATASE95	PROTEIN PHOSPHATASE 2C62	ospp95, pp95, pp95-10, pp95-25	7	Q0D673. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0507000	LOC_Os07g32380.1				GO:0010966 - regulation of phosphate transport, GO:0055062 - phosphate ion homeostasis, GO:0004721 - phosphoprotein phosphatase activity, GO:0042594 - response to starvation, GO:0046872 - metal ion binding		PO:0009005 - root , PO:0009006 - shoot system , PO:0025205 - shoot system vascular system , PO:0005020 - vascular bundle , PO:0006036 - root epidermis , PO:0005772 - exodermis , PO:0005352 - xylem , PO:0000258 - root cortex , PO:0020124 - root stele 
17936	PP2C63	OsPP2C63, OsPP96	PROTEIN PHOSPHATASE 2C63	protein phosphatase 2C63, protein phosphatase 2C 63, protein phosphatase 96	PROTEIN PHOSPHATASE 2C63		7	Q0D629. 		Os07g0516100	LOC_Os07g33230.1				GO:0004721 - phosphoprotein phosphatase activity		
17937	PP2C64	OsPP2C64, OsPP97	PROTEIN PHOSPHATASE 2C64	protein phosphatase 2C64, protein phosphatase 2C 64, protein phosphatase 97	PROTEIN PHOSPHATASE 2C64		7	Q8H4S6. 		Os07g0566200	LOC_Os07g37890.1				GO:0005886 - plasma membrane, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004721 - phosphoprotein phosphatase activity		
17938	PP2C65	OsPP2C65, OsPP98	PROTEIN PHOSPHATASE 2C65	protein phosphatase 2C65, protein phosphatase 2C 65, protein phosphatase 98	PROTEIN PHOSPHATASE 2C65		7	Q8H2T0. 		Os07g0646100	LOC_Os07g45170.1				GO:0005886 - plasma membrane, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity		
17939	PP2C66	OsPP2C66, OsPP102	PROTEIN PHOSPHATASE 2C66	protein phosphatase 2C66, protein phosphatase 2C 66, protein phosphatase 102	PROTEIN PHOSPHATASE 2C66		8	Q6ZKL8. 		Os08g0500300	LOC_Os08g39100.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0005886 - plasma membrane, GO:0046872 - metal ion binding		
17940	PP2C67	OsPP2C67, OsPP107	PROTEIN PHOSPHATASE 2C67	protein phosphatase 2C67, protein phosphatase 2C 67, protein phosphatase 107	PROTEIN PHOSPHATASE 2C67		9	Q0J2R1. 		Os09g0314400	LOC_Os09g14540.1				GO:0046872 - metal ion binding, GO:0004721 - phosphoprotein phosphatase activity		
17941	PP2C69	OsPP2C69, OsPP109	PROTEIN PHOSPHATASE 2C69	protein phosphatase 2C69, protein phosphatase 2C 69, protein phosphatase 109	PROTEIN PHOSPHATASE 2C69		9	Q67J17. 		Os09g0459600	LOC_Os09g28560.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17942	PP2C70	OsPP2C70, OsPP110	PROTEIN PHOSPHATASE 2C70	protein phosphatase 2C70, protein phosphatase 2C 70, protein phosphatase 110	PROTEIN PHOSPHATASE 2C70		9	Q653S3. 		Os09g0558000	LOC_Os09g38550.5, LOC_Os09g38550.4, LOC_Os09g38550.2, LOC_Os09g38550.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17943	PP2C71	OsPP2C71, OsPP111	PROTEIN PHOSPHATASE 2C71	protein phosphatase 2C71, protein phosphatase 2C 71, protein phosphatase 111	PROTEIN PHOSPHATASE 2C71		10	Q339D2. 		Os10g0370000	LOC_Os10g22460.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17944	PP2C72	OsPP2C72, OsPP114	PROTEIN PHOSPHATASE 2C72	protein phosphatase 2C72, protein phosphatase 2C 72, protein phosphatase 114	PROTEIN PHOSPHATASE 2C72		10	Q7XCJ7. 		Os10g0544900	LOC_Os10g39780.1, LOC_Os10g39780.2, LOC_Os10g39780.3, LOC_Os10g39780.4				GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
17945	PP2C74	OsPP2C74, OsPP120, PP120	PROTEIN PHOSPHATASE 2C74	protein phosphatase 2C74, protein phosphatase 2C 74, protein phosphatase 120	PROTEIN PHOSPHATASE 2C74		11	Q53Q11. 	 Tolerance and resistance - Stress tolerance	Os11g0242200	LOC_Os11g13820.1				GO:0009414 - response to water deprivation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation	TO:0000276 - drought tolerance	
17946	PP2C75	OsPP2C75, OsPP121	PROTEIN PHOSPHATASE 2C75	protein phosphatase 2C75, protein phosphatase 2C 75, protein phosphatase 121	PROTEIN PHOSPHATASE 2C75		11	Q2R637. 		Os11g0417400	LOC_Os11g22404.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
17947	XA46	OsPP2C76, PP2C76, OsPP122, PP122, Xa46(t), Xa46, Doa, OsDoa	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 46	protein phosphatase 2C76, protein phosphatase 2C 76, protein phosphatase 122, serine/threonine-protein kinase Doa, STPK Doa			11	A3CCP9. 	 Tolerance and resistance - Disease resistance	Os11g0586100	LOC_Os11g37540.1				GO:0046872 - metal ion binding, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
17948	PP2C77	OsPP2C77, OsPP129, PP129	PROTEIN PHOSPHATASE 2C77	protein phosphatase 2C77, protein phosphatase 2C 77, protein phosphatase 129	PROTEIN PHOSPHATASE 2C77		12	Q2QWE3. GO:1900140: regulation of seedling development.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os12g0198200	LOC_Os12g09640.1				GO:0006470 - protein amino acid dephosphorylation, GO:0009738 - abscisic acid mediated signaling, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait	
17949	PP2C78	OsPP2C78, OsPP131	PROTEIN PHOSPHATASE 2C78	protein phosphatase 2C78, protein phosphatase 2C 78, protein phosphatase 131	PROTEIN PHOSPHATASE 2C78		12	Q2QN36. 		Os12g0580900	LOC_Os12g39120.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0006470 - protein amino acid dephosphorylation		
17950	_	PIC23	_	resistance gene analog PIC23			1	an NBS-LRR class R-gene. AF146270.	 Tolerance and resistance - Stress tolerance						GO:0006952 - defense response, GO:0043531 - ADP binding		
17951	_	PIC24	_	resistance gene analog PIC24			11	an NBS-LRR class R-gene. AF146271.							GO:0043531 - ADP binding		
17952	_	PIC27	_	resistance gene analog PIC27			8	an NBS-LRR class R-gene. AF146275.		Os08g0543050	LOC_Os08g43000.1				GO:0006952 - defense response, GO:0043531 - ADP binding		
17953	_		_	histone H3			6	a gibberellin-induced gene. X85102.							GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0003677 - DNA binding, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus	TO:0000166 - gibberellic acid sensitivity	
17954	_		_	PCR clone D, 37 kDa chloroplast inner envelope membrane protein			12	X85103. Q2QM69 (2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic). a gene whose expression pattern did not change over the course of treatment with GA.	 Tolerance and resistance - Stress tolerance	Os12g0615400	LOC_Os12g42090.1, LOC_Os12g42090.2, LOC_Os12g42090.3				GO:0010236 - plastoquinone biosynthetic process, GO:0010189 - vitamin E biosynthetic process, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009706 - chloroplast inner membrane, GO:0051741 - 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	TO:0006001 - salt tolerance	
17955	25S rRNA	25S rRNA	25S rRNA	25S RIBOSOMAL RNA				M23642.	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
17956	YGL10	CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL	YELLOW-GREEN LEAF 10	"chlorophyll a oxygenase, Chlorophyll a oxygenase 1, chlorophyllide a oxygenate 1, Lls1-homologue of maize, \"3, 8-divinyl chlorophyllide a 8-vinyl reductase\", pale green leaf, yellow green leaf 10"		pgl, ygl10, cao1, cao1-1, cao1-2, cao1-3, cao1-1-2, cao1-2-16	10	AB021310. Q8S7E1. AF284781. D46313. GO:0072593: reactive oxygen species metabolic process. GO:1900055: regulation of leaf senescence. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Character as QTL - Grain quality,  Seed - Physiological traits,  Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic	Os10g0567400	LOC_Os10g41780.3, LOC_Os10g41780.4, LOC_Os10g41780.2, LOC_Os10g41780.1				GO:0009725 - response to hormone stimulus, GO:0015995 - chlorophyll biosynthetic process, GO:0010277 - chlorophyllide a oxygenase activity, GO:0031969 - chloroplast membrane, GO:0005506 - iron ion binding, GO:0006952 - defense response, GO:0009408 - response to heat, GO:0009535 - chloroplast thylakoid membrane, GO:0010027 - thylakoid membrane organization, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0060548 - negative regulation of cell death, GO:0042542 - response to hydrogen peroxide, GO:0009645 - response to low light intensity stimulus, GO:0050832 - defense response to fungus, GO:0051707 - response to other organism, GO:0010109 - regulation of photosynthesis, GO:0048366 - leaf development, GO:0009658 - chloroplast organization, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0010150 - leaf senescence, GO:0015996 - chlorophyll catabolic process, GO:0051607 - defense response to virus, GO:0009416 - response to light stimulus, GO:0046686 - response to cadmium ion, GO:0015994 - chlorophyll metabolic process, GO:0009409 - response to cold	TO:0000207 - plant height, TO:0000457 - total biomass yield, TO:0000396 - grain yield, TO:0000316 - photosynthetic ability, TO:0000303 - cold tolerance, TO:0000605 - hydrogen peroxide content, TO:0002662 - leaf rolling tolerance, TO:0000655 - leaf development trait, TO:0000266 - chalky endosperm, TO:0000211 - gel consistency, TO:0000063 - mimic response, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000249 - leaf senescence, TO:0000401 - plant growth hormone sensitivity, TO:0000496 - carotenoid content, TO:0000255 - sheath blight disease resistance, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000259 - heat tolerance, TO:0001027 - net photosynthetic rate, TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance, TO:0000460 - light intensity sensitivity, TO:0002757 - flag leaf length, TO:0002758 - flag leaf lamina width, TO:0000455 - seed set percent, TO:0000590 - grain weight, TO:0000295 - chlorophyll-b content, TO:0000196 - amylose content, TO:0000162 - seed quality, TO:0000293 - chlorophyll-a content, TO:0000298 - chlorophyll ratio, TO:0002715 - chloroplast development trait, TO:0000075 - light sensitivity, TO:0000346 - tiller number, TO:0000397 - grain size, TO:0002759 - grain number	PO:0001050 - leaf development stage , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
17957	_	GST	_	glutathione S-transferase			10	AC074232: OSJNBb0005J14.23.	 Biochemical character						GO:0016740 - transferase activity		
17958	_	GST.p	_	glutathione S-transferase pseudogene			10	AC074232: OSJNBb0005J14.6.									
17959	_	GST.p	_	glutathione S-transferase pseudogene			10	AC074232: OSJNBb0005J14.4.									
17960	_	GST	_	Glutathione S-transferase			10	AC091680: OSJNBa0034L04.24. LOC_Os10g38489.	 Biochemical character	Os10g0528200	LOC_Os10g38489.1				GO:0016740 - transferase activity		
17961	GSTU24	OsGSTU24	TAU GLUTATHIONE S-TRANSFERASE 24	glutathione transferase U24	TAU GLUTATHIONE S-TRANSFERASE 24		10	AC091680: OSJNBa0034L04.25.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0528100	LOC_Os10g38470.1				GO:0009407 - toxin catabolic process, GO:0016740 - transferase activity, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0005737 - cytoplasm		
17962	_	RPS2	_	ribosomal protein S2			10	AC091680: OSJNBa0034L04.40. AC074232: OSJNBb0005J14.8. identical to chloroplastic ribosomal protein S2 (rps2) gene (LOC_Osp1g00270, P0C482).	 Biochemical character		LOC_Osp1g00270				GO:0006412 - translation, GO:0015935 - small ribosomal subunit, GO:0003735 - structural constituent of ribosome		
17963	_	atpI	_	ATPase a subunit, ATP synthase CF0 A subunit			10	AC091680: OSJNBa0034L04.41. AC074232: OSJNBb0005J14.9. identical to chloroplastic ATPase a subunit (atpI) gene (LOC_Osp1g00280, P0C2Y7). Os10g0527100 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)). LOC_Os10g38276.	 Biochemical character		LOC_Osp1g00280				GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0015986 - ATP synthesis coupled proton transport		
17964	_	atpH	_	ATPase III subunit, ATP synthase CF0 C subunit			10	AC091680: OSJNBa0034L04.42. AC074232: OSJNBb0005J14.10. P0C301. identical to chloroplastic ATPase III subunit (atpH) gene (P0C301).	 Biochemical character						GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0016021 - integral to membrane, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0009536 - plastid, GO:0009535 - chloroplast thylakoid membrane, GO:0008289 - lipid binding		
17965	_	atpF	_	ATPase I subunit, ATP synthase CF0 B subunit			10	AC091680: OSJNBa0034L04.43. AC074232: OSJNBb0005J14.11. identical to chloroplastic ATPase I subunit (atpF) gene (P0C2Z0).	 Biochemical character						GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0016021 - integral to membrane, GO:0015986 - ATP synthesis coupled proton transport		
17966	_	atpA	_	ATPase alpha subunit			10	AC091680: OSJNBa0034L04.44. AC074232: OSJNBb0005J14.21. identical to chloroplastic ATPase alpha subunit (atpA) gene (LOC_Osp1g00310, P0C2Z6). 	 Biochemical character		LOC_Osp1g00310				GO:0005524 - ATP binding, GO:0015992 - proton transport, GO:0046034 - ATP metabolic process		
17967	_	rpoC2	_	RNA polymerase beta' subunit-2 (5'-partial), RNA polymerase beta'' subunit			10	AC074232: OSJNBb0005J14.7. identical to C terminus of chloroplastic RNA polymerase beta subunit 2 (rpoC2) gene (P0C509). 	 Biochemical character								
17968	_	rps14	_	ribosomal protein S14			10	AC074232: OSJNBb0005J14.18. identical to chloroplastic ribosomal protein S14 (rps14) gene (P0C467). 	 Biochemical character								
17969	_		_	photosystem I P700 chlorophyll A apoprotein A2			10	AC074232: OSJNBb0005J14.17. near identical to chloroplastic photosystem I P700 chlorophyll A apoprotein A2 (psaB) gene (LOC_Osp1g00330, P0C358). 	 Biochemical character		LOC_Osp1g00330				GO:0015979 - photosynthesis, GO:0009522 - photosystem I, GO:0016021 - integral to membrane		
17970	_	psaA	_	photosystem I P700 chlorophyll A apoprotein A1			10	AC074232: OSJNBb0005J14.16. near identical to chloroplastic photosystem I P700 chlorophyll A apoprotein A1 gene (LOC_Osp1g00340, P0C355). 	 Biochemical character		LOC_Osp1g00340				GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0009522 - photosystem I, GO:0015979 - photosynthesis		
17971	_	rps4	_	ribosomal protein S4			10	AC074232: OSJNBb0005J14.15. identical to chloroplastic ribosomal protein S4 (rps4) gene (P0C488). 	 Biochemical character						GO:0009507 - chloroplast, GO:0006412 - translation, GO:0019843 - rRNA binding, GO:0009536 - plastid, GO:0003735 - structural constituent of ribosome, GO:0015935 - small ribosomal subunit		
17972	_	ndhJ	_	NADH-plastoquinone oxidoreductase subunit J, NADH dehydrogenase subunit J			10	AC074232: OSJNBb0005J14.14. identical to chloroplastic NADH plastoquinone oxidoreductase subunit J (ORF159) gene (LOC_Osp1g00370, P0C340). 	 Biochemical character		LOC_Osp1g00370				GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0009535 - chloroplast thylakoid membrane		
17973	_		_	PSII G protein (5'-partial)			10	AC074232: OSJNBb0005J14.13. near identical to chloroplastic PSII G protein (psbG) gene (P0C343). 	 Biochemical character						GO:0046872 - metal ion binding, GO:0048038 - quinone binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0008137 - NADH dehydrogenase (ubiquinone) activity		
17974	_	ndhC	_	NADH dehydrogenase ND3, NADH dehydrogenase subunit 3			10	AC074232: OSJNBb0005J14.29. near identical to chloroplastic NADH dehydrogenase ND3 (ndhC) gene (P0C320, P0C321 and P0C322). 	 Biochemical character								
17975	SSA1	OSOTP 51, OSOTP51, OTP51, OsOTP51, OsSSA1	SEEDLING STAGE ALBINO 1	organelle transcript processing 51, seedling stage albino1		osotp51, ssa1, ssa1-2, ssa1-9	2	a pentatricopeptide repeats protein homologous to organelle transcript processing 51 in Arabidopsis. JN613018. Q6ZHJ5. GO:1900865: chloroplast RNA modification.	 Other,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os02g0702000	LOC_Os02g47360.1				GO:0000373 - Group II intron splicing, GO:0048564 - photosystem I assembly, GO:0004519 - endonuclease activity, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0009451 - RNA modification, GO:0008380 - RNA splicing, GO:0045292 - nuclear mRNA cis splicing, via spliceosome	TO:0000316 - photosynthetic ability, TO:0000207 - plant height, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	PO:0025034 - leaf , PO:0009047 - stem 
17977	_	DEC	_	DECUSSATE		dec, dec-1, dec-2	12	AB683949.	 Vegetative organ - Leaf	Os12g0465700	LOC_Os12g27994.1, LOC_Os12g27994.2				GO:0060771 - phyllotactic patterning, GO:0009736 - cytokinin mediated signaling	TO:0006014 - phyllotaxy, TO:0000167 - cytokinin sensitivity	
17978	_	Ospdhk1	_	pyruvate dehydrogenase kinase 1			3			Os03g0370000	LOC_Os03g25400.1				GO:0005524 - ATP binding, GO:0016301 - kinase activity		
17979	_	OsOSC6	_	oxidosqualene cyclase 6			6	LOC_Os06g28820. KC416147. OsOSC6 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).		Os06g0483200	LOC_Os06g28820.1				GO:0016866 - intramolecular transferase activity		
17980	_	OsOSC1	_	oxidosqualene cyclase 1			2	LOC_Os02g04690. 	 Biochemical character	Os02g0139500	LOC_Os02g04690.1, LOC_Os02g04690.2						
17981	_	OsOSC3	_	oxidosqualene cyclase 3			2	LOC_Os02g04730. OsOSC3 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).	 Biochemical character	Os02g0140200	LOC_Os02g04730.1				GO:0005783 - endoplasmic reticulum, GO:0016104 - triterpenoid biosynthetic process, GO:0034074 - marneral synthase activity		
17982	OSC4	OsOSC4	OXIDOSQUALENE CYCLASE 4	oxidosqualene cyclase 4	OXIDOSQUALENE CYCLASE 4		2	LOC_Os02g04750-LOC_Os02g04760. This pair of sequences (locus IDs Os02g04750/Os02g04760) was found to form a single OSC gene, being separated by a transposon (Os02g04755) (Inagaki et al. 2011). OsOSC4 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).	 Biochemical character	Os02g0140400/Os02g0140500	LOC_Os02g04750.1, LOC_Os02g04750.2, LOC_Os02g04750.3, LOC_Os02g04760.1				GO:0042299 - lupeol synthase activity, GO:0042300 - beta-amyrin synthase activity		
17983	_	OsOSC5	_	oxidosqualene cyclase 5			5	LOC_Os05g14800. OsOSC5 is no longer likely to be functional genes because of large disabling mutations (Inagaki et al. 2011).	 Biochemical character		LOC_Os05g14800						
17984	_	OsOSC9	_	oxidosqualene cyclase 9			11	LOC_Os11g18310-LOC_Os11g18340. The pair of sequences (locus IDs Os11g18310/Os11g18340) were found to form a single OSC gene, with the two MSU loci  separated by a third locus (Os11g18320) transcribed on the opposite strand, but with the intervening region nevertheless showing evidence of OSC exons on the 'correct' strand, to a large extent interleaved with the Os11g18320 exons.	 Biochemical character	Os11g0286400	LOC_Os11g18340.1				GO:0016866 - intramolecular transferase activity		
17985	_	OsOSC10	_	oxidosqualene cyclase 10			11	LOC_Os11g18366.	 Biochemical character	Os11g0286800	LOC_Os11g18366.2, LOC_Os11g18366.3, LOC_Os11g18366.4				GO:0016866 - intramolecular transferase activity		
17986	_	OsOSC12	_	oxidosqualene cyclase 12			8	LOC_Os08g12740.	 Biochemical character	Os08g0224000	LOC_Os08g12740.1, LOC_Os08g12740.2				GO:0006952 - defense response, GO:0043531 - ADP binding		
17987	CYP51G1	OsCYP51G1	P-450 51G1	Cytochrome P450 51G1	CYTOCHROME P450 51G1		11	LOC_Os11g32240.	 Biochemical character	Os11g0525200	LOC_Os11g32240.1				GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0005794 - Golgi apparatus, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
17988	CYP51G3	OsCYP51G3	P-450 51G3	Cytochrome P450 51G3	CYTOCHROME P450 51G3		5	metabolite: Syringenone. an obtusifoliol 14alpha-demethylase.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os05g0211100	LOC_Os05g12040.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016132 - brassinosteroid biosynthetic process, GO:0007623 - circadian rhythm, GO:0009651 - response to salt stress, GO:0005506 - iron ion binding	TO:0000206 - leaf angle, TO:0006031 - inflorescence size, TO:0000449 - grain yield per plant, TO:0000053 - pollen sterility, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000445 - seed number	
17989	CYP51G4	OsCYP51G4	P-450 51G4	Cytochrome P450 51G4	CYTOCHROME P450 51G4		7	LOC_Os07g37980.	 Biochemical character	Os07g0567200	LOC_Os07g37980.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17990	CYP51H1	OsCYP51H1	P-450 51H1	Cytochrome P450 51H1	CYTOCHROME P450 51H1		7	LOC_Os07g28160.	 Biochemical character	Os07g0465400	LOC_Os07g28160.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding		
17991	CYP51H2	OsCYP51H2	P-450 51H2	Cytochrome P450 51H2	CYTOCHROME P450 51H2		7	LOC_Os07g28140.	 Biochemical character	Os07g0465200	LOC_Os07g28140.1						
17992	CYP51H3	OsCYP51H3	P-450 51H3	Cytochrome P450 51H3	CYTOCHROME P450 51H3		7	LOC_Os07g28110.	 Biochemical character	Os07g0464700	LOC_Os07g28110.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17993	CYP51H4	OsCYP51H4	P-450 51H4	Cytochrome P450 51H4	CYTOCHROME P450 51H4		2	LOC_Os02g21810.	 Biochemical character	Os02g0323600	LOC_Os02g21810.1				GO:0008168 - methyltransferase activity, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
17994	CYP51H5	OsCYP51H5	P-450 51H5	Cytochrome P450 51H5	CYTOCHROME P450 51H5		2	LOC_Os02g02230.	 Biochemical character	Os02g0113200	LOC_Os02g02230.1				GO:0020037 - heme binding, GO:0005783 - endoplasmic reticulum, GO:0016126 - sterol biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0008398 - sterol 14-demethylase activity, GO:0005886 - plasma membrane		
17995	SDF5	OsCYP51H6, CYP51H6, P-450 51H6	SEMI-DWARF 5	Cytochrome P450 51H6, semi-dwarf 5	CYTOCHROME P450 51H6	sdf5	5	TO:0000975: grain width.	 Character as QTL - Plant growth activity,  Coloration,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Biochemical character,  Vegetative organ - Culm	Os05g0415800	LOC_Os05g34325.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0051510 - regulation of unidimensional cell growth, GO:0080006 - internode patterning, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0009686 - gibberellin biosynthetic process, GO:0020037 - heme binding	TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0002759 - grain number, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000326 - leaf color, TO:0002675 - gibberellic acid content, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000145 - internode length	PO:0009047 - stem , PO:0025034 - leaf , PO:0009051 - spikelet 
17996	CYP51H7	OsCYP51H7	P-450 51H7	Cytochrome P450 51H7	CYTOCHROME P450 51H7		5	LOC_Os05g34330.	 Biochemical character	Os05g0415900	LOC_Os05g34330.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
17997	CYP51H8	OsCYP51H8	P-450 51H8	Cytochrome P450 51H8	CYTOCHROME P450 51H8		5	LOC_Os05g34380.	 Biochemical character	Os05g0416400	LOC_Os05g34380.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
17998	CYP51H9	OsCYP51H9	P-450 51H9	Cytochrome P450 51H9	CYTOCHROME P450 51H9		7	LOC_Os07g37970.	 Biochemical character	Os07g0567100	LOC_Os07g37970.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
17999	_	orf288, LD-orf310	_				Mt	LOC_Osm1g00240. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99379 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19867 (Nipponbare complete mitochondrial genome). AP011077 (Indica Group mitochondrial DNA, complete genome): BAI68030. LD-orf310 in AP011077 which is identical to orf288 in Nipponbare. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00240				GO:0005739 - mitochondrion		
18000	_	orf194	_				Mt	LOC_Osm1g00250. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99346 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19868 (Nipponbare complete mitochondrial genome).			LOC_Osm1g00250				GO:0005739 - mitochondrion		
18001	_	orf153	_				Mt	LOC_Osm1g00380. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99376 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19881 (Nipponbare complete mitochondrial genome). JN861111: AER13019, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03733 (indica IR6888 complete mitochondrial genome).			LOC_Osm1g00380				GO:0005739 - mitochondrion		
18002	RPS13	rps13	S13 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME	S13 subunit of the mitochondrial ribosome, Ribosomal protein S13	S13 SUBUNIT OF THE MITOCHONDRIAL RIBOSOME		Mt	LOC_Osm1g00390. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99390 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029: BAC19882 (Nipponbare complete mitochondrial genome). JN861111: AER13028, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03732 (indica IR6888 complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00390				GO:0006412 - translation, GO:0003723 - RNA binding, GO:0015935 - small ribosomal subunit, GO:0005739 - mitochondrion, GO:0042254 - ribosome biogenesis, GO:0003735 - structural constituent of ribosome		
18004	5S  rRNA	rrn5	5S RIBOSOMAL RNA	5S RIBOSOMAL RNA, 5S ribosomal RNA, 5S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome).	 Biochemical character						GO:0043043 - peptide biosynthetic process, GO:0005763 - mitochondrial small ribosomal subunit		
18005	_	rps14, rps14.p, pseudo-rps14	_	Ribosomal protein S14 pseudogene	_		Mt	LOC_Osm1g00560. DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). BA000029 (Nipponbare complete mitochondrial genome).	 Biochemical character		LOC_Osm1g00560						
18006	_	trnV.p, pseudo-trnV, trnV	_	tRNA-Val pseudogene, tRNA-Val			Mt	BA000029 (Nipponbare complete mitochondrial genome). D13100 (a transferred chloroplast DNA sequence). JF281153 (indica IR6888 complete mitochondrial genome). The locations of BA000029: pseudo-trnV and JF281153: trnV pseudogene are in conflict.									
18007	_	orf258, orf317	_				Mt	LOC_Osm1g00160. BA000029: BAC19859 (Nipponbare complete mitochondrial genome). JF281153: AEZ03754 (indica IR6888  complete mitochondrial genome). orf317 in JF281153. 			LOC_Osm1g00160				GO:0005739 - mitochondrion		
18009	_	ndhK	_				Mt	D13112 (a transferred chloroplast DNA sequence).									
18010	RPOB.P	rpoB.p	RNA POLYMERASE SUBUNIT B PSEUDOGENE	RNA polymerase beta chain pseudogene, rpoB pseudogene	RNA POLYMERASE SUBUNIT B PSEUDOGENE		Mt	D13111 (a transferred chloroplast DNA sequence). Result of an intramitochondrial duplication event following transfer of a ctDNA fragment (Nakazono et al. 1993).	 Biochemical character								
18012	_	orf161b	_				Mt	JF281153: AEZ03741 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005524 - ATP binding, GO:0015986 - ATP synthesis coupled proton transport, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0005739 - mitochondrion		
18013	_	orf389	_				Mt	JF281153: AEZ03740 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0000287 - magnesium ion binding, GO:0005739 - mitochondrion, GO:0016984 - ribulose-bisphosphate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide		
18014	_	orf165b	_				Mt	JF281153: AEZ03739 (indica IR6888 complete mitochondrial genome).							GO:0003723 - RNA binding, GO:0016740 - transferase activity, GO:0003735 - structural constituent of ribosome, GO:0005739 - mitochondrion, GO:0015934 - large ribosomal subunit, GO:0006412 - translation		
18015	_	orf356	_				Mt	JF281153: AEZ03731 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005739 - mitochondrion, GO:0070469 - respiratory chain, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0022904 - respiratory electron transport chain, GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity		
18016	_	orf347	_				Mt	JF281153: AEZ03730 (indica IR6888 complete mitochondrial genome).	 Other						GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0005739 - mitochondrion		
18017	_	orf579	_				Mt	JF281153: AEZ03729 (indica IR6888 complete mitochondrial genome).	 Other						GO:0003677 - DNA binding, GO:0005739 - mitochondrion, GO:0006351 - transcription, DNA-dependent, GO:0003899 - DNA-directed RNA polymerase activity		
18018	_	orf1054	_				Mt	JF281153: AEZ03728 (indica IR6888 complete mitochondrial genome).	 Other						GO:0006351 - transcription, DNA-dependent, GO:0032549 - ribonucleoside binding, GO:0005739 - mitochondrion, GO:0003899 - DNA-directed RNA polymerase activity, GO:0003677 - DNA binding		
18019	_	orf154	_				Mt	JF281153: AEZ03720 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18020	_	orf160	_				Mt	JF281153: AEZ03719 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18021	_	orf173c	_				Mt	JF281153: AEZ03716 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18022	_	atp1, atp1-1, ATP1	_	ATP synthase F0 subunit 1, ATP synthase subunit 1, ATP synthase alpha subunit			Mt	LOC_Osm1g00580. P0C521, P0C522. AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19899 (Nipponbare complete mitochondrial genome). JN861111: AER12983, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03711 (indica IR6888 complete mitochondrial genome). atp1-1 in JN861111 and JN861112. an F1 sector component of complex V.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Osm1g00580				GO:0015991 - ATP hydrolysis coupled proton transport, GO:0005730 - nucleolus, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0009941 - chloroplast envelope, GO:0005743 - mitochondrial inner membrane, GO:0005773 - vacuole, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0005886 - plasma membrane, GO:0005507 - copper ion binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0050897 - cobalt ion binding, GO:0009451 - RNA modification, GO:0006979 - response to oxidative stress, GO:0008270 - zinc ion binding, GO:0008266 - poly(U) RNA binding, GO:0005618 - cell wall, GO:0015986 - ATP synthesis coupled proton transport		
18023	_	trnS(GGA), trnS	_	tRNA-Ser			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome).									
18024	NAD9	nad9, nad9-1, CI-27kD, CI-27KD	NADH DEHYDROGENASE SUBUNIT 9	NADH dehydrogenase subunit 9, NADH-ubiquinone oxidoreductase 27 kDa subunit, Complex I-27kD, Complex I-27KD, subunit 9 of NADH dehdrogenase	NADH DEHYDROGENASE SUBUNIT 9		Mt	EC=1.6.5.3 EC=1.6.99.3 D50099. Q35322. LOC_Osm1g00590. BA000029: BAC19900 (Nipponbare complete mitochondrial genome). JN861111: AER13001, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03710 (indica IR6888 complete mitochondrial genome). nad9-1 in JN861111 and JN861112.	 Biochemical character		LOC_Osm1g00590	GR:0100144			GO:0022900 - electron transport chain, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0006810 - transport, GO:0006120 - mitochondrial electron transport, NADH to ubiquinone, GO:0070469 - respiratory chain, GO:0005739 - mitochondrion, GO:0005747 - mitochondrial respiratory chain complex I, GO:0005743 - mitochondrial inner membrane		
18025	_	orf164	_				Mt	JF281153: AEZ03709 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18026	_	orf173, orf173-1, orf173b	_				Mt	LOC_Osm1g00600. BA000029: BAC19901 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99381 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111: AER13010, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03708 (indica IR6888 complete mitochondrial genome). orf173-1 in JN861111 and JN861112. orf173b in JF281153.			LOC_Osm1g00600				GO:0005739 - mitochondrion		
18027	_	orf162, orf162-1	_				Mt	LOC_Osm1g00610. BA000029: BAC19902 (Nipponbare complete mitochondrial genome). DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400: AAZ99380 (cultivar Nipponbare). JN861111: AER13041, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03707 (indica IR6888 complete mitochondrial genome). orf162-1 in JN861111 and JN861112.			LOC_Osm1g00610				GO:0005739 - mitochondrion		
18028	_	orf187, orf187-2	_				Mt	JN861111: AER13040, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03706 (indica IR6888 complete mitochondrial genome). orf187-2 in JN861111 and JN861112.							GO:0005739 - mitochondrion		
18029	_	rrn18	_	18S RIBOSOMAL RNA, 18S ribosomal RNA, 18S rRNA			Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
18030	_	rps14, rps14.p, pseudo-rps14	_	Ribosomal protein S14 pseudogene	_		Mt	DQ167399 (isolate 93-11 complete mitochondrial genome), DQ167400 (cultivar Nipponbare), DQ167807 (isolate PA64S). 									
18035	_	cob	_	apocytochrome b			Mt	JN861111: AER12985, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0022904 - respiratory electron transport chain, GO:0009055 - electron carrier activity, GO:0005739 - mitochondrion, GO:0016021 - integral to membrane, GO:0070469 - respiratory chain, GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity		
18036	_	mat-r-2	_	maturase-related protein			Mt	JN861111: AER12975, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0005739 - mitochondrion, GO:0003964 - RNA-directed DNA polymerase activity, GO:0003723 - RNA binding, GO:0006397 - mRNA processing	TO:0000437 - male sterility	
18037	_	rps1-2	_	ribosomal protein S1	_		Mt	JN861111:AER13039, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Other						GO:0005739 - mitochondrion, GO:0005840 - ribosome		
18038	_	ccmFn-2	_	cytochrome c biogenesis Fn			Mt	JN861111: AER12977, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0016020 - membrane, GO:0005739 - mitochondrion, GO:0008535 - respiratory chain complex IV assembly, GO:0015232 - heme transporter activity		
18039	_	ccmFc-2	_	cytochrome c biogenesis Fc			Mt	JN861111:AER12997, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18040	_	trnS(GCT), trnS	_	tRNA-Ser			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
18041	_	trnC(GCA), trnC	_	tRNA-Cys			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 									
18042	_	orf165-2	_				Mt	JN861111:AER13017, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18043	_	orf284-2	_				Mt	JN861111: AER12993, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18044	_	cox1-2	_	cytochrome c oxidase subunit 1			Mt	JN861111:AER12980, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0020037 - heme binding, GO:0006119 - oxidative phosphorylation, GO:0005886 - plasma membrane, GO:0005743 - mitochondrial inner membrane, GO:0005739 - mitochondrion, GO:0005507 - copper ion binding, GO:0009060 - aerobic respiration, GO:0016021 - integral to membrane, GO:0004129 - cytochrome-c oxidase activity, GO:0070469 - respiratory chain, GO:0005506 - iron ion binding, GO:0022900 - electron transport chain		
18045	_	rpl5-2	_	ribosomal protein L5			Mt	JN861111: AER13004, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Other						GO:0005840 - ribosome, GO:0005739 - mitochondrion, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
18046	_	orf187-3	_				Mt	JN861111: AER13037, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18047	_	atp6-2	_	ATP synthase F0 subunit 6			Mt	JN861111: AER12989, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0015986 - ATP synthesis coupled proton transport, GO:0005743 - mitochondrial inner membrane, GO:0005739 - mitochondrion, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o)		
18052	_	orf152b-2	_				Mt	JN861111: AER13022, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18053	_	orf187-4	_				Mt	JN861111: AER13036, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 							GO:0005739 - mitochondrion		
18054	_	rrn5	_	5S ribosomal RNA			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). 	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
18055	_	rrn18	_	18S ribosomal RNA			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome).	 Biochemical character						GO:0005763 - mitochondrial small ribosomal subunit, GO:0043043 - peptide biosynthetic process		
18060	_	trnfM(CAT), trnfM	_	tRNA-Met, initiator methionine tRNA			Mt	JN861111, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153 (indica IR6888 complete mitochondrial genome).									
18064	_	nad3	_	NADH dehydrogenase subunit 3			Mt	JN861111: AER13033, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03699 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005739 - mitochondrion, GO:0008137 - NADH dehydrogenase (ubiquinone) activity, GO:0070469 - respiratory chain		
18067	_	trnQ	_	tRNA-Gln			Mt	JF281153 (indica IR6888 complete mitochondrial genome).									
18068	_	orf161c	_				Mt	JF281153: AEZ03762 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18071	_	orf221	_				Mt	JF281153: AEZ03760 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0005739 - mitochondrion, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity, GO:0022904 - respiratory electron transport chain, GO:0005506 - iron ion binding, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity		
18072	_	orf160b	_				Mt	JF281153: AEZ03759 (indica IR6888 complete mitochondrial genome).							GO:0005739 - mitochondrion		
18073	_	orf313	_				Mt	JF281153: AEZ03757 (indica IR6888 complete mitochondrial genome).	 Biochemical character						GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain		
18076	_	rps19	_	ribosomal protein S19			Pt	X15901 (Japonica Group chloroplast genome).	 Other								
18077	_	ycf15.p	_	ycf15 pseudo, ycf15 pseudogene			Pt	JN861109, JN861110 (Indica Group chloroplast genome).							GO:0009507 - chloroplast		
18078	_	ycf15.p	_	ycf15 pseudo, ycf15 pseudogene			Pt	JN861109, JN861110 (Indica Group chloroplast genome).							GO:0009507 - chloroplast		
18079	_	PAL09	_	phenylalanine ammonia-lyase 9	_		8	AY360388 (OSJNBa0038J12). 	 Biochemical character								
18080	_	PAL10	_	phenylalanine ammonia-lyase 10	_		8	OSJNBa0061E21.122. 	 Biochemical character								
18081	_	PAL11	_	phenylalanine ammonia-lyase 11	_		5	AC144735 (OSJNBa0001A14). 	 Biochemical character	Os05g0558900	LOC_Os05g48510.1, LOC_Os05g48510.2				GO:0005829 - cytosol, GO:0006432 - phenylalanyl-tRNA aminoacylation, GO:0000049 - tRNA binding, GO:0004826 - phenylalanine-tRNA ligase activity, GO:0000287 - magnesium ion binding, GO:0005524 - ATP binding		
18082	_	C4H, OsC4H	_	cinnamate 4-hydroxylase			2	AP004850 (OJ1342). OsC4H here may correspond to  Os02g0467000 or Os02g0467600.	 Biochemical character						GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000624 - allelopathic effect	
18083	AO1	AAO3, OsAAO3, OsAO1, AAO2, OsAAO2	ALDEHYDE OXIDASE 1	Indole-3-acetaldehyde oxidase 3, aldehyde oxidase 1	ALDEHYDE OXIDASE 1		3	Q852M1. one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014).  AAO2 in Qin et al. 2020. AAO3 in  Long et al. 2023.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0790900	LOC_Os03g57690.1				GO:0005829 - cytosol, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0004031 - aldehyde oxidase activity, GO:0009688 - abscisic acid biosynthetic process, GO:0009851 - auxin biosynthetic process, GO:0042742 - defense response to bacterium, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0050660 - FAD binding, GO:0009629 - response to gravity, GO:0009055 - electron carrier activity, GO:0005506 - iron ion binding	TO:0000175 - bacterial blight disease resistance, TO:0002672 - auxin content, TO:0002693 - gravity response trait	
18084	NIT1	OsNIT1, OsNIT2, NIT2, OsNIT4A, NIT4A	NITRILASE 1	nitrilase 1, Nitrilase 2	NITRILASE 1	osnit1	2	Q6H849. OsNIT2 in Abu-Zaitoon 2014. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os02g0635200	LOC_Os02g42350.2, LOC_Os02g42350.1				GO:0047558 - 3-cyanoalanine hydratase activity, GO:0009970 - cellular response to sulfate starvation, GO:0005829 - cytosol, GO:0019499 - cyanide metabolic process, GO:0046686 - response to cadmium ion, GO:0060359 - response to ammonium ion, GO:0010167 - response to nitrate, GO:0080109 - indole-3-acetonitrile nitrile hydratase activity, GO:0005886 - plasma membrane, GO:0047427 - cyanoalanine nitrilase activity, GO:0080061 - indole-3-acetonitrile nitrilase activity, GO:0009851 - auxin biosynthetic process, GO:0051410 - detoxification of nitrogen compound, GO:0048046 - apoplast, GO:0009507 - chloroplast, GO:0009506 - plasmodesma	TO:0002672 - auxin content, TO:0000227 - root length, TO:0001013 - lateral root number, TO:0000011 - nitrogen sensitivity	
18085	_	ZB8	_	Phenylalanine ammonia lyase			5		 Biochemical character								
18086	_	OsFbox025, OsFbox25, Os_F0325, OsFBD5, FBD5	_	F-box protein 25, F-box-type E3 ubiquitin ligase D5			1	LOC_Os01g41290. Os_F0325 in Hua et al. 2011.	 Biochemical character	Os01g0596100	LOC_Os01g41290.1				GO:0016829 - lyase activity		
18087	_	Os_F0698, OsFBX461, FBX461	_	F-box-type E3 ubiquitin ligase X461			12	LOC_Os12g40370. F-box protein. Os_F0698 in Hua et al. 2011.		Os12g0595401	LOC_Os12g40370.1						
18088	_	OsUXS1, UXS-1	_	UDP-xylose synthase 1, UDP-glucuronic acid decarboxylase 1			3	AB167397.	 Biochemical character	Os03g0280800	LOC_Os03g17230.1				GO:0050662 - coenzyme binding, GO:0048040 - UDP-glucuronate decarboxylase activity, GO:0044237 - cellular metabolic process		
18089	_	OsUXS5, UXS-5	_	UDP-xylose synthase 5, UDP-glucuronic acid decarboxylase 5			5	AB182636.	 Biochemical character	Os05g0363200	LOC_Os05g29990.1				GO:0003824 - catalytic activity, GO:0044237 - cellular metabolic process		
18090	_	OsUXS6, UXS-6	_	UDP-xylose synthase 6, UDP-glucuronic acid decarboxylase 6			7	AB183706.	 Biochemical character	Os07g0674100	LOC_Os07g47700.1				GO:0044237 - cellular metabolic process, GO:0003824 - catalytic activity		
18091	UVDDB1	UV-DDB1, OsUV-DDB1, OsUV-DDB, OsDDB1, DDB1	UV-DAMAGED DNA BINDING PROTEIN 1	UV-damaged DNA binding protein large subunit, UV-DDB large subunit, UV-damaged DNA binding protein, UV-damaged DNA binding protein 1	UV-DAMAGED DNA BINDING PROTEIN 1	osddb1	5	AB037144.	 Biochemical character,  Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance,  Coloration - Others	Os05g0592400	LOC_Os05g51480.1, LOC_Os05g51480.2				GO:0009793 - embryonic development ending in seed dormancy, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0010100 - negative regulation of photomorphogenesis, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0003676 - nucleic acid binding	TO:0000064 - embryo related trait, TO:0000707 - pericarp color, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
18092	CSB	OsCBS, CHR704, OsCHR704	COCKAYNE SYNDROME WD-REPEAT PROTEIN	Cockayne syndrome WD-repeat protein, chromatin remodeling factor 704	COCKAYNE SYNDROME WD-REPEAT PROTEIN		1	AB111944. Q7F2E4. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0102800	LOC_Os01g01312.1				GO:0016787 - hydrolase activity, GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0006281 - DNA repair, GO:0010332 - response to gamma radiation, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0008094 - DNA-dependent ATPase activity, GO:0003677 - DNA binding, GO:0006283 - transcription-coupled nucleotide-excision repair	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
18094	NMD3	OsNMD3	NONSENSE-MEDIATED MRNA DECAY 3	60S ribosomal subunit nuclear export adaptor NMD3, Nonsense-mediated mRNA decay protein 3	NONSENSE-MEDIATED MRNA DECAY PROTEIN 3		10		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Morphological traits,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os10g0573900	LOC_Os10g42320.1				GO:0006611 - protein export from nucleus, GO:0007029 - endoplasmic reticulum organization, GO:0005829 - cytosol, GO:0009834 - secondary cell wall biogenesis, GO:0005634 - nucleus	TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0000455 - seed set percent, TO:0002759 - grain number, TO:0000421 - pollen fertility, TO:0000145 - internode length, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000590 - grain weight	
18095	_	OsRPL10Ac1, OsL10a	_	large ribosomal protein 10Ac1, 60S Ribosomal Protein L10a			8	LOC_Os08g44450.		Os08g0558800	LOC_Os08g44450.1, LOC_Os08g44450.2, LOC_Os08g44450.3				GO:0003723 - RNA binding		
18096	DSG1	OsDSG1, OsRING408, RING408	DELAYED SEED GERMINATION 1	Delayed Seed Germination1, delayed seed germination 1, RING-type E3 ubiquitin ligase 408	RING FINGER E3 LIGASE		9	RING finger E3 ligase.	 Tolerance and resistance - Stress tolerance	Os09g0434200	LOC_Os09g26400.1				GO:0006865 - amino acid transport, GO:0005829 - cytosol, GO:0006950 - response to stress, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0004842 - ubiquitin-protein ligase activity, GO:0006979 - response to oxidative stress, GO:0005634 - nucleus, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0016874 - ligase activity	TO:0002657 - oxidative stress, TO:0000164 - stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18097	PYL/RCAR7	OsPYL/RCAR7, OsPYL7, PYL7, OsPYL12	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7	pyrabactin resistance-like 12, PYR1-like 7, pyrabactin resistance 1-like 7	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7	pyl7	6	ABA receptor. OsPYL7 in He et al. 2014, Miao et al. 2018, Miao et al. 2020. OsPYL11, 12 or 13 in Tian et al. 2015. No name in Kim et al. 2012. thought to be nonfunctional (Tian et al. 2015).  GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os06g0526400	LOC_Os06g33480.1				GO:0009738 - abscisic acid mediated signaling, GO:0010427 - abscisic acid binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004864 - phosphoprotein phosphatase inhibitor activity		
18098	PYL/RCAR11	OsPYL/RCAR11, OsPYL12, PYL12, OsPYL11, PYL11	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 11	pyrabactin resistance-like 11, PYR1-like 12, pyrabactin resistance 1-like 12	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 11	pyl12	2	ABA receptor. OsPYL12 in He et al. 2014, Miao et al. 2018. OsPYL11, 12 or 13 in Tian et al. 2015. No name in Kim et al. 2012. thought to be nonfunctional (Tian et al. 2015). GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.	 Seed - Physiological traits - Dormancy	Os02g0255300	LOC_Os02g15620.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:2000033 - regulation of seed dormancy, GO:0010427 - abscisic acid binding, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0048623 - seed germination on parent plant	TO:0000253 - seed dormancy	
18099	RAN1	OsRAN1	RAN GTPASE 1	Ran GTPase 1, Ras-like nuclear GTPase 1, Ras-related nuclear protein 1	RAN GTPASE 1		1	small G-protein. AB015971. Q7F7I7. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0611100					GO:0009734 - auxin mediated signaling pathway, GO:0009409 - response to cold, GO:0003924 - GTPase activity, GO:0007067 - mitosis, GO:0007264 - small GTPase mediated signal transduction, GO:0006886 - intracellular protein transport, GO:0032502 - developmental process, GO:0005525 - GTP binding, GO:0005634 - nucleus, GO:0006913 - nucleocytoplasmic transport	TO:0000357 - growth and development trait, TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity	
18101	_	OsRAN3, RAN3	_					small G-protein. 	 Biochemical character								
18102	LYL1	OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P	LIGHT-INDUCED YELLOW LEAF 1	Geranylgeranyl reductase, Light-Induced Yellow Leaf 1, Geranylgeranyl Reductase I, Geranylgeranyl-diphosphate reductase, geranylgeranyl reductase 1		502ys, lyl1-1, lyl1-2	2	Q6Z2T6. KF305678, KF305679. GO:0080183: response to photooxidative stress. an AtGGR (At1g74470) orthologue. 	 Biochemical character,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os02g0744900	LOC_Os02g51080.1				GO:0015995 - chlorophyll biosynthetic process, GO:0009416 - response to light stimulus, GO:0009535 - chloroplast thylakoid membrane, GO:0009644 - response to high light intensity, GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, GO:0019344 - cysteine biosynthetic process, GO:0019684 - photosynthesis, light reaction, GO:0031969 - chloroplast membrane, GO:0035304 - regulation of protein amino acid dephosphorylation, GO:0045550 - geranylgeranyl reductase activity, GO:0000302 - response to reactive oxygen species, GO:0009645 - response to low light intensity stimulus, GO:0009658 - chloroplast organization, GO:0010189 - vitamin E biosynthetic process	TO:0000326 - leaf color, TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content	PO:0025034 - leaf 
18103	_	OsGT3	_	glycosyltransferase 3			12	a putative xylosyltransferase (XXT). LOC_Os12g05380.	 Biochemical character	Os12g0149300	LOC_Os12g05380.1				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
18104	RAR1	Os RAR1, OsRAR1	_	rice RAR1 ortholog		rar1	2	Q6EPW7. C28356. a component in the OsRac1-mediated complex. a candidate gene for qBLS2.3. GO:0140403: effector-mediated suppression of host innate immune response.	 Tolerance and resistance - Disease resistance	Os02g0535400	LOC_Os02g33180.1				GO:0051879 - Hsp90 protein binding, GO:0050832 - defense response to fungus, GO:0002679 - respiratory burst during defense response, GO:0008270 - zinc ion binding, GO:0009626 - plant-type hypersensitive response, GO:0009816 - defense response to bacterium, incompatible interaction, GO:0042742 - defense response to bacterium, GO:0050821 - protein stabilization, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000203 - bacterial leaf streak disease resistance, TO:0000074 - blast disease, TO:0000112 - disease resistance, TO:0000175 - bacterial blight disease resistance	
18105	_	OsHUS1, HUS1	_	rice HUS1 homolog, Hydroxyurea sensitive 1		Oshus1, Oshus1-1, Oshus1-2	4	LOC_Os04g44620. a member of the RAD9-RAD1-HUS1 (9-1-1) complex. GO:2000781: positive regulation of double-strand break repair. GO:2000003: positive regulation of DNA damage checkpoint.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0528400	LOC_Os04g44620.1, LOC_Os04g44620.2				GO:0000077 - DNA damage checkpoint, GO:0006302 - double-strand break repair, GO:0042138 - meiotic DNA double-strand break formation, GO:0007131 - reciprocal meiotic recombination, GO:0005730 - nucleolus, GO:0030896 - checkpoint clamp complex, GO:0006281 - DNA repair		
18106	CSLA11	OsCslA11, OsCSLA11	CELLULOSE SYNTHASE LIKE A11		CELLULOSE SYNTHASE LIKE A11		8	Q6YWK8. GO:0071555: cell wall organization.	 Biochemical character	Os08g0434632	LOC_Os08g33740.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0009531 - secondary cell wall, GO:0016757 - transferase activity, transferring glycosyl groups		PO:0009047 - stem 
18107	CSLC10	OsCslC10, OsCSLC10	CELLULOSE SYNTHASE LIKE C10		CELLULOSE SYNTHASE LIKE C10		7	LOC_Os07g03260. Q84Z01. GO:0071555: cell wall organization.	 Biochemical character	Os07g0124750	LOC_Os07g03260.1				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups		
18108	CSLE6	OsCslE6, OsCSLE6	CELLULOSE SYNTHASE LIKE E6		CELLULOSE SYNTHASE LIKE E6		9	Q651X6.	 Biochemical character	Os09g0478300	LOC_Os09g30130.2, LOC_Os09g30130.1				GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
18109	CSLF8	OsCslF8, OsCSLF8	CELLULOSE SYNTHASE LIKE F8		CELLULOSE SYNTHASE LIKE F8		7	Q84S18.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0551700	LOC_Os07g36630.1				GO:0000139 - Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0009651 - response to salt stress, GO:0030244 - cellulose biosynthetic process, GO:0016021 - integral to membrane, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance, TO:0006001 - salt tolerance	PO:0009005 - root 
18110	CSLF9	OsCslF9, OsCSLF9	CELLULOSE SYNTHASE LIKE F9		CELLULOSE SYNTHASE LIKE F9		7	Q7XHV0. a target of miR6245.	 Biochemical character,  Vegetative organ - Culm	Os07g0551600	LOC_Os07g36610.1				GO:0016021 - integral to membrane, GO:0030244 - cellulose biosynthetic process, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0000139 - Golgi membrane	TO:0000051 - stem strength	PO:0009005 - root 
18111	CSLH3	OsCslH3, OsCSLH3	CELLULOSE SYNTHASE LIKE H3		CELLULOSE SYNTHASE LIKE H3		4	Q7XUU0. LOC_Os04g35030.	 Biochemical character	Os04g0429600	LOC_Os04g35030.1				GO:0016021 - integral to membrane, GO:0000139 - Golgi membrane, GO:0016760 - cellulose synthase (UDP-forming) activity, GO:0030244 - cellulose biosynthetic process		
18112	RLCK178	OsPti1a, Pti1a, OsRLCK178	RECEPTOR-LIKE CYTOPLASMIC KINASE 178	Pto-interacting protein 1a, Receptor-like Cytoplasmic Kinase 178	RECEPTOR-LIKE CYTOPLASMIC KINASE 178	ospti1a, pti1a	5	an ortholog of tomato (Solanum lycopersicum) SlPti1. GO:0140426: PAMP-triggered immunity signalling pathway. 	 Tolerance and resistance - Lesion mimic,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os05g0135800	LOC_Os05g04520.1				GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0002218 - activation of innate immune response, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0009626 - plant-type hypersensitive response, GO:0031348 - negative regulation of defense response	TO:0000653 - seed development trait, TO:0000063 - mimic response, TO:0000112 - disease resistance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0009010 - seed , PO:0001170 - seed development stage 
18113	RLCK33	OsPti1b, Pti1b, OsRLCK33	RECEPTOR-LIKE CYTOPLASMIC KINASE 33	Pto-interacting protein 1b, Receptor-like Cytoplasmic Kinase 33	RECEPTOR-LIKE CYTOPLASMIC KINASE 33		1	an ortholog of tomato (Solanum lycopersicum) SlPti1.	 Seed,  Reproductive organ - panicle	Os01g0323100	LOC_Os01g21970.1				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18114	OXI1	OsOxi1, OsAGC10, AGC10	OXIDATIVE SIGNAL INDUCIBLE 1	AGC Kinase OsOxi1, oxidative signal inducible 1, AGC protein kinase 10	AGC PROTEIN KINASE 10		1	GO:0140426: PAMP-triggered immunity signalling pathway.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0488700	LOC_Os04g41160.1				GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18115	UBC13	OsUbc13, Ubc13, OsUBC47, UBC47	UBIQUITIN-CONJUGATING ENZYME 13	Ubiquitin conjugating enzyme 13, Ubiquitin-conjugating enzyme 47	UBIQUITIN-CONJUGATING ENZYME 13		1	closely related to AtUBC13B. OsUBC47 in Zhang et al. 2015. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0673600	LOC_Os01g48280.1, LOC_Os01g48280.2				GO:0031348 - negative regulation of defense response, GO:0048316 - seed development, GO:0070534 - protein K63-linked ubiquitination, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0006974 - response to DNA damage stimulus, GO:0002238 - response to molecule of fungal origin, GO:0002237 - response to molecule of bacterial origin, GO:0050832 - defense response to fungus, GO:0016881 - acid-amino acid ligase activity, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0009739 - response to gibberellin stimulus	TO:0000063 - mimic response, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0002668 - jasmonic acid content, TO:0000653 - seed development trait, TO:0000605 - hydrogen peroxide content, TO:0000166 - gibberellic acid sensitivity	PO:0001170 - seed development stage 
18116	CROC1	OsCROC-1, CROC-1, OsCROC1, OsUEV1B, UEV1B	_	Ubc-E2 variant 1B, Ubc enzyme variant protein 1B, ubiquitin-conjugating enzyme variant protein 1B		osuev1b	12	required for formation of Lys63 polyubiquitylation and error-free DNA damage tolerance. Similar to CROC-1-like protein. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0605400	LOC_Os12g41220.1				GO:0016881 - acid-amino acid ligase activity, GO:0006974 - response to DNA damage stimulus, GO:0051881 - regulation of mitochondrial membrane potential, GO:0006817 - phosphate transport, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0000209 - protein polyubiquitination, GO:0055062 - phosphate ion homeostasis	TO:0000164 - stress trait	
18117	_	OsMPK14, MPK14	_	mitogen-activated protein kinase 14			5	Q75KK8.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os05g0143500	LOC_Os05g05160.1				GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus, GO:0009814 - defense response, incompatible interaction, GO:0002213 - defense response to insect, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance	
18118	B12D1	OsB12D1	_	B12D-like protein 1			7		 Tolerance and resistance - Stress tolerance	Os07g0604700	LOC_Os07g41350.1				GO:0009845 - seed germination, GO:0009723 - response to ethylene stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0009413 - response to flooding	TO:0000114 - flooding related trait, TO:0000280 - seedling vigor, TO:0000173 - ethylene sensitivity	
18119	_	OsEnS-48	_	B12D-like protein, endosperm-specific gene 48			3	LOC_Os03g40440. one of six OsB12Ds (B12D-like proteins).		Os03g0601500	LOC_Os03g40440.1						
18120	_		_	B12D-like protein			6	LOC_Os06g13680. one of six OsB12Ds (B12D-like proteins).		Os06g0246000	LOC_Os06g13680.1						
18121	_		_	B12D-like protein			7	LOC_Os07g17310. one of six OsB12Ds (B12D-like proteins).		Os07g0274400	LOC_Os07g17310.1						
18122	_		_	B12D-like protein			7	LOC_Os07g17330. one of six OsB12Ds (B12D-like proteins).		Os07g0274700	LOC_Os07g17330.1						
18123	_		_	B12D-like protein			7	LOC_Os07g41340. one of six OsB12Ds (B12D-like proteins).		Os07g0604600	LOC_Os07g41340.1						
18124	_	OsNuc37	_	nuclear 37kDa endonuclease, nuclear endonucleases of 37 kDa, endonuclease OsNuc37					 Tolerance and resistance - Stress tolerance,  Biochemical character						GO:0009651 - response to salt stress, GO:0012501 - programmed cell death	TO:0006001 - salt tolerance	
18125	_	OsCyt20	_	cytoplasmic 20kDa endonuclease, cytoplasmic endonucleases of 20kDa, endonuclease OsCyt20					 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0012501 - programmed cell death, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18126	_		_	cystatin			1	Q5N806.	 Biochemical character,  Tolerance and resistance	Os01g0915200	LOC_Os01g68660.1				GO:0006952 - defense response, GO:0005576 - extracellular region, GO:0004869 - cysteine-type endopeptidase inhibitor activity		
18127	_		_	glucanase			7		 Tolerance and resistance,  Biochemical character	Os07g0168600	LOC_Os07g07340.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006952 - defense response		
18128	PUT3	OsPUT3, OsPUT3.1, OsPAR1, OsLAT5	POLYAMINE UPTAKE TRANSPORTER 3	PA uptake transporter 3, polyamine uptake transporter 3, paraquat resistant1, paraquat resistant 1			3	OsPAR1 functions similar to PAR1 in Arabidopsis in the regulation of paraquat sensitivity (Li et al. 2013). LOC_Os03g37984. GO:1900055: regulation of leaf senescence.	 Biochemical character,  Reproductive organ - Heading date,  Vegetative organ - Leaf	Os03g0576900	LOC_Os03g37984.1, LOC_Os03g37984.2, LOC_Os03g37984.3, LOC_Os03g37984.4, LOC_Os03g37984.5				GO:0009507 - chloroplast, GO:0015606 - spermidine transmembrane transporter activity, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015848 - spermidine transport, GO:2000028 - regulation of photoperiodism, flowering, GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0002616 - flowering time	
18129	_	FATB1, OsFATB1	_				6	acyl-ACP thioesterase. one of the VLCFA (very longchain fatty acids) synthesis-related genes. wax synthesis related gene.	 Biochemical character	Os06g0143400	LOC_Os06g05130.1				GO:0006633 - fatty acid biosynthetic process, GO:0016790 - thiolester hydrolase activity		
18130	LACS9	OsLACS1, LACS1, OsLACS9	LONG-CHAIN ACYL-COA SYNTHETASE 9	Long-chain acyl-CoA synthetase 1	LONG-CHAIN ACYL-COA SYNTHETASE 9	lacs9, lacs9-1, lacs9-2	12	acyl-CoA synthetase. one of the VLCFA (very longchain fatty acids) synthesis-related genes. OsLACS9 in Kitajima-Koga et al. 2020. OsLACS1 in Zhou et al. 2014, 2015. TO:0000756: stem internode morphology trait. GO:2000883: positive regulation of starch catabolic process. TO:0001041: root yield. TO:0000870: leaf yield trait.	 Vegetative organ - Culm,  Vegetative organ - Root,  Biochemical character,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os12g0168700	LOC_Os12g07110.1, LOC_Os12g07110.2				GO:0003824 - catalytic activity, GO:0040007 - growth, GO:0016020 - membrane, GO:0009527 - plastid outer membrane, GO:0009941 - chloroplast envelope, GO:0005983 - starch catabolic process	TO:0000576 - stem length, TO:0000145 - internode length, TO:0000207 - plant height	
18131	HMS1	CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6, OsHMS1, OsKCS8, KCS8	HUMIDITY-SENSITIVE GENIC MALE STERILITY 1	eceriferum6, eceriferum 6, cuticular 1, wax crystal-sparse leaf 4, beta-ketoacyl-coenzyme A synthase 6, beta-ketoacyl-CoA synthase 6, 3-Ketoacyl-CoA synthase 8	BETA-KETOACYL-COENZYME A SYNTHASE 6	wsl4, wsl4-1, wsl4-2, hms1	3	one of the beta-ketoacyl CoA synthase genes. OsKCS8 in Yang  et al. 2023. GO:0090547: response to low humidity. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0220100	LOC_Os03g12030.1				GO:0009859 - pollen hydration, GO:0046686 - response to cadmium ion, GO:0009270 - response to humidity, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0048653 - anther development, GO:0010208 - pollen wall assembly, GO:0009414 - response to water deprivation, GO:0005783 - endoplasmic reticulum, GO:0009846 - pollen germination, GO:0009876 - pollen adhesion, GO:0016020 - membrane, GO:0009860 - pollen tube growth, GO:0009555 - pollen development, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0010584 - pollen exine formation, GO:0006633 - fatty acid biosynthetic process, GO:0010025 - wax biosynthetic process	TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0000180 - spikelet fertility, TO:0000199 - genic male sterility, TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0000441 - humidity related trait, TO:0000604 - fat and essential oil content	PO:0009049 - inflorescence , PO:0025386 - cuticular wax , PO:0009071 - anther wall tapetum , PO:0009066 - anther , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009047 - stem 
18132	KCS1	OsKCS1, OsKCS13, KCS13	BETA-KETOACYL COA SYNTHASE 1	beta-ketoacyl CoA synthase 1	BETA-KETOACYL COA SYNTHASE 1		5	one of the beta-ketoacyl CoA synthase genes. OsKCS13 in Yang et al. 2023. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0568000	LOC_Os05g49290.1, LOC_Os05g49290.2, LOC_Os05g49290.3				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0046686 - response to cadmium ion, GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane		PO:0009010 - seed , PO:0009005 - root 
18133	FDH2	OsFDH2	_				6	one of the beta-ketoacyl CoA synthase genes. Q67U69.	 Biochemical character	Os06g0486900	LOC_Os06g29220.1				GO:0051287 - NAD or NADH binding, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0008863 - formate dehydrogenase activity, GO:0005739 - mitochondrion		
18134	KCR1	OsKCR1, OsWSL3, WSL3	BETA-KETOACYL-COA REDUCTASE 1	beta-ketoacyl-CoA reductase 1, Wax crystal-sparse leaf 3	BETA-KETOACYL-COA REDUCTASE 1		4	wax synthesis related gene.	 Biochemical character	Os04g0483500	LOC_Os04g40730.1				GO:0016491 - oxidoreductase activity		
18135	CER10	OsCER10	ECERIFERUM 10	eceriferum10, eceriferum 10			1	trans-2-enoyl-CoA reductase. wax synthesis related gene.	 Biochemical character	Os01g0150000	LOC_Os01g05670.1				GO:0005886 - plasma membrane, GO:0046520 - sphingoid biosynthetic process, GO:0019166 - trans-2-enoyl-CoA reductase (NADPH) activity, GO:0016126 - sterol biosynthetic process, GO:0016021 - integral to membrane, GO:0010025 - wax biosynthetic process, GO:0009923 - fatty acid elongase complex, GO:0009922 - fatty acid elongase activity, GO:0009651 - response to salt stress, GO:0007030 - Golgi organization, GO:0006816 - calcium ion transport, GO:0006633 - fatty acid biosynthetic process		
18136	CYP86A7-1	CYP86A7-1, OsCYP86A7-1	P-450 86A7-1	Cytochrome P450 86A7-1	P-450 86A7-1		4		 Biochemical character	Os04g0560100	LOC_Os04g47250.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
18137	CYP86A7-2	CYP86A7-2, OsCYP86A7-2	P-450 86A7-2	Cytochrome P450 86A7-2, fatty acid omega-hydroxylase	P-450 86A7-2		1		 Biochemical character	Os01g0854800	LOC_Os01g63540.1				GO:0018685 - alkane 1-monooxygenase activity, GO:0000041 - transition metal ion transport, GO:0010345 - suberin biosynthetic process, GO:0016021 - integral to membrane, GO:0005773 - vacuole, GO:0006631 - fatty acid metabolic process, GO:0005506 - iron ion binding, GO:0009055 - electron carrier activity		
18138	CYP86A7-3	CYP86A7-3, OsCYP86A7-3	P-450 86A7-3	Cytochrome P450 86A7-3	P-450 86A7-3		10		 Biochemical character	Os10g0486000	LOC_Os10g34470.1				GO:0046872 - metal ion binding, GO:0008081 - phosphoric diester hydrolase activity		
18139	_	GPDH1, OsGPDH1-1	_	glycerol-3-phosphate dehydrogenase 1			5	Q65X70.	 Biochemical character	Os05g0495700	LOC_Os05g41590.1				GO:0004367 - glycerol-3-phosphate dehydrogenase (NAD+) activity, GO:0046168 - glycerol-3-phosphate catabolic process, GO:0005975 - carbohydrate metabolic process, GO:0051287 - NAD or NADH binding, GO:0009331 - glycerol-3-phosphate dehydrogenase complex		
18140	_	GPDH2, OsGPDH1-2	_	glycerol-3-phosphate dehydrogenase 2			1	Q8S0G4.	 Biochemical character	Os01g0939600	LOC_Os01g71280.1				GO:0005975 - carbohydrate metabolic process, GO:0046168 - glycerol-3-phosphate catabolic process, GO:0051287 - NAD or NADH binding, GO:0004367 - glycerol-3-phosphate dehydrogenase (NAD+) activity, GO:0009331 - glycerol-3-phosphate dehydrogenase complex		
18141	_	MAH1, OsMAH1, OsCYP96B3, CYP96B3	_	midchain alkane hydroxylase 1, Cytochrome P450 96B5, P-450 96B5			3	one of wax metabolism-related genes. LOC_Os03g04650.	 Biochemical character	Os03g0140100	LOC_Os03g04650.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
18142	RGG1	OsRGG1	RICE G PROTEIN GAMMA SUBUNIT 1	heterotrimeric G-protein gamma subunit 1, G protein gamma1 subunit, rice G protein gamma subunit 1, G protein gamma subunit 1	RICE G PROTEIN GAMMA SUBUNIT 1	rgg1, rgg1-1, rgg1-2	3	AB120662. GU111573. B8AN27. Q75WU1. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Vegetative organ - Root,  Seed - Morphological traits,  Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os03g0635100	LOC_Os03g43480.1				GO:0010541 - acropetal auxin transport, GO:0009691 - cytokinin biosynthetic process, GO:0051302 - regulation of cell division, GO:0009736 - cytokinin mediated signaling, GO:0009817 - defense response to fungus, incompatible interaction, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0018342 - protein prenylation, GO:0005525 - GTP binding, GO:0048527 - lateral root development, GO:0018345 - protein palmitoylation, GO:0009409 - response to cold, GO:0004871 - signal transducer activity, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0000139 - Golgi membrane, GO:0009408 - response to heat, GO:0009845 - seed germination, GO:0048573 - photoperiodism, flowering, GO:0033398 - zeatin biosynthetic process, GO:0005834 - heterotrimeric G-protein complex, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0000167 - cytokinin sensitivity, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000734 - grain length, TO:0002660 - cytokinin content, TO:0006001 - salt tolerance, TO:0000137 - days to heading, TO:0000449 - grain yield per plant, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000592 - 1000-dehulled grain weight, TO:0000145 - internode length, TO:0000303 - cold tolerance, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity	PO:0009051 - spikelet , PO:0009049 - inflorescence 
18143	RGG2	OsRGG2	RICE G PROTEIN GAMMA SUBUNIT 2	heterotrimeric G-protein gamma subunit 2, G protein gamma2 subunit, rice G protein gamma subunit 2, G protein gamma subunit 2, type B heterotrimeric G protein c subunit	RICE G PROTEIN GAMMA SUBUNIT 2	rgg2, zrgg2-1, zrgg2-2, nrgg2-1	2		 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date	Os02g0137800 	LOC_Os02g04520.1, LOC_Os02g04520.2				GO:0004871 - signal transducer activity, GO:0009651 - response to salt stress, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0005834 - heterotrimeric G-protein complex, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009740 - gibberellic acid mediated signaling, GO:0030308 - negative regulation of cell growth, GO:0009737 - response to abscisic acid stimulus, GO:0048573 - photoperiodism, flowering	TO:0000371 - yield trait, TO:0000040 - panicle length, TO:0000449 - grain yield per plant, TO:0006001 - salt tolerance, TO:0000457 - total biomass yield, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000137 - days to heading, TO:0000145 - internode length, TO:0000259 - heat tolerance, TO:0002730 - grain shape, TO:0000342 - panicle axis angle, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
18144	CAF1-12	OsCAF1A, CAF1A, OsCAF1-12	CCR4-ASSOCIATED FACTOR 1-12	"CCR4-associated factor 1A, carbon catabolite
repressor 4-associated factor 1A, CCR4-associated factor 1-12"	CCR4-ASSOCIATED FACTOR 1-12		8	a key component of  the CCR4-NOT complex.	 Tolerance and resistance - Stress tolerance	Os08g0440300	LOC_Os08g34170.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0006995 - cellular response to nitrogen starvation		
18145	CAF1-5	OsCAF1B, CAF1B, OsCAF1-5	CCR4-ASSOCIATED FACTOR 1-5	"CCR4-associated factor 1B, carbon catabolite
repressor 4-associated factor 1B, CCR4-associated factor 1-5"	CCR4-ASSOCIATED FACTOR 1-5	OsCAF1Bm	4	a key component of  the CCR4-NOT complex.	 Tolerance and resistance - Stress tolerance	Os04g0684900	LOC_Os04g58810.1				GO:0003676 - nucleic acid binding, GO:0009409 - response to cold, GO:0016071 - mRNA metabolic process, GO:0005634 - nucleus, GO:0006995 - cellular response to nitrogen starvation	TO:0000303 - cold tolerance, TO:0000605 - hydrogen peroxide content	
18146	CAF1-13	OsCAF1G, CAF1G, OsCAF1-13	CCR4-ASSOCIATED FACTOR 1-13	"CCR4-associated factor 1G, carbon catabolite
repressor 4-associated factor 1G, CCR4-associated factor 1-13"	CCR4-ASSOCIATED FACTOR 1-13		9	LOC_Os09g24990. a key component of  the CCR4-NOTcomplex.	 Tolerance and resistance - Stress tolerance	Os09g0416800	LOC_Os09g24990.2, LOC_Os09g24990.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0006995 - cellular response to nitrogen starvation		
18147	CAF1-1	OsCAF1H, CAF1H, OsCAF1-1	_CCR4-ASSOCIATED FACTOR 1-1	"CCR4-associated factor 1H, carbon catabolite
repressor 4-associated factor 1H, CCR4-associated factor 1-1"	CCR4-ASSOCIATED FACTOR 1-1		2	a key component of  the CCR4-NOT complex.	 Tolerance and resistance	Os02g0796300	LOC_Os02g55300.1				GO:0005634 - nucleus, GO:0006995 - cellular response to nitrogen starvation, GO:0003676 - nucleic acid binding		
18148	_	OsHSP70, hsp70, OsMed37_4, Med37_4	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD, Mediator 37_4			3		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0821100	LOC_Os03g60620.1				GO:0009615 - response to virus, GO:0006950 - response to stress, GO:0005524 - ATP binding	TO:0000148 - viral disease resistance	
18149	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			1	LOC_Os01g52290.		Os01g0721000	LOC_Os01g52290.1				GO:0005524 - ATP binding		
18150	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			3	LOC_Os03g16880.	 Tolerance and resistance - Stress tolerance	Os03g0276800	LOC_Os03g16880.1				GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0009615 - response to virus		
18151	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			11	LOC_Os11g08445.			LOC_Os11g08445				GO:0009615 - response to virus, GO:0005524 - ATP binding		
18152	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			11		 Reproductive organ	Os11g0187600/Os11g0187700	LOC_Os11g08460.1, LOC_Os11g08460.2				GO:0005524 - ATP binding		PO:0020094 - plant egg cell 
18153	_	OsHSP70, hsp70	_	heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD			11	LOC_Os11g08470.		Os11g0187800	LOC_Os11g08470.1				GO:0005524 - ATP binding, GO:0009615 - response to virus		
18154	MC1	OsMC1	METACASPASE 1	Metacaspase 1	METACASPASE 1		3		 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0388900	LOC_Os03g27120.1				GO:0009751 - response to salicylic acid stimulus, GO:0004197 - cysteine-type endopeptidase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000303 - cold tolerance	
18155	MC2	OsMC2	METACASPASE 2	Metacaspase 2	METACASPASE 2		3	CT835282, CT835269.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0389400	LOC_Os03g27210.1				GO:0009414 - response to water deprivation, GO:0007568 - aging, GO:0004197 - cysteine-type endopeptidase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
18156	MC3	OsMC3, OsSTA102	METACASPASE 3	Metacaspase 3	METACASPASE 3		3	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0389000	LOC_Os03g27170.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000255 - sheath blight disease resistance, TO:0000259 - heat tolerance	PO:0009066 - anther 
18157	MC4	OsMC4	METACASPASE 4	Metacaspase 4	METACASPASE 4		5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0496400	LOC_Os05g41660.1				GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0004197 - cysteine-type endopeptidase activity, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
18158	MC6	OsMC6	METACASPASE 6	Metacaspase 6	METACASPASE 6		1		 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os01g0799900	LOC_Os01g58580.1				GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0004197 - cysteine-type endopeptidase activity, GO:0002213 - defense response to insect, GO:0009737 - response to abscisic acid stimulus	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000261 - insect damage resistance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
18159	MC7	OsMC7	METACASPASE 7	Metacaspase 7	METACASPASE 7		11	LOC_Os11g04010.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0134700	LOC_Os11g04010.1				GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0007568 - aging, GO:0004197 - cysteine-type endopeptidase activity, GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0048046 - apoplast, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	
18160	MC8	OsMC8	METACASPASE 8	Metacaspase 8	METACASPASE 8		3		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0389100	LOC_Os03g27190.1				GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0007568 - aging, GO:0009751 - response to salicylic acid stimulus, GO:0004197 - cysteine-type endopeptidase activity	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
18161	CPD2	OsCPD2, CYP90A4, CYP90A4/OsCPD2	CPD2	CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM 2, Cytochrome P450 90A4	CYTOCHROME P450 90A4		12	one of the orthologs to the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM (CPD) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0139300	LOC_Os12g04480.1				GO:0020037 - heme binding, GO:0009753 - response to jasmonic acid stimulus, GO:0051607 - defense response to virus, GO:0009742 - brassinosteroid mediated signaling, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016132 - brassinosteroid biosynthetic process, GO:0009637 - response to blue light, GO:0004497 - monooxygenase activity	TO:0000159 - blue light sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0002676 - brassinosteroid content, TO:0000020 - black streak dwarf virus resistance	
18163	DEX1	Os DEX1, OsDEX1	DEFECTIVE IN EXINE PATTERN FORMATION 1	Defective in Exine Formation 1		osdex1, osdex1-1, osdex1-2, osdex1-3, osdex1-4	3	a homolog of Arabidopsis DEX1. LOC_Os03g61050. GO:2000939: regulation of plant-type cell wall cellulose catabolic process.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0825700 	LOC_Os03g61050.1				GO:0005509 - calcium ion binding, GO:0010383 - cell wall polysaccharide metabolic process, GO:0010208 - pollen wall assembly, GO:0009555 - pollen development, GO:0005783 - endoplasmic reticulum	TO:0000437 - male sterility	PO:0001004 - anther development stage 
18164	NEF1	Os NEF1, OsNEF1	NO EXINE FORMATION 1	NO EXINE FORMATION1, no exine formation 1			11	LOC_Os11g32470. a homolog of Arabidopsis NEF1.	 Tolerance and resistance - Stress tolerance	Os11g0528200 	LOC_Os11g32470.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
18166	_	OsRCI2-5	_	rare cold-inducible 2-5			3	RCI2 (rare cold-inducible 2) family gene. LOC_Os03g17790.	 Tolerance and resistance - Stress tolerance	Os03g0286900	LOC_Os03g17790.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
18167	_	OsRCI2-1	_	rare cold-inducible 2-1			1	RCI2 (rare cold-inducible 2) family gene. LOC_Os01g18390.			LOC_Os01g18390						
18168	_	OsRCI2-2	_	rare cold-inducible 2-2			1	RCI2 (rare cold-inducible 2) family gene. AP002070 (PAC clone P0511C01): 38352-38672.									
18169	_	OsRCI2-3	_	rare cold-inducible 2-3			3	RCI2 (rare cold-inducible 2) family gene. LOC_Os03g25460.		Os03g0370600	LOC_Os03g25460.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold		
18170	_	OsRCI2-4	_	rare cold-inducible 2-4			3	RCI2 (rare cold-inducible 2) family gene. AAAA01010593 (Obsolete) : 136011-135776.									
18171	_	OsRCI2-7	_	rare cold-inducible 2-7			5	RCI2 (rare cold-inducible 2) family gene. LOC_Os05g03130. AU088623.		Os05g0122700	LOC_Os05g03130.1				GO:0016021 - integral to membrane		
18172	_	OsRCI2-8	_	rare cold-inducible 2-8			6	RCI2 (rare cold-inducible 2) family gene. LOC_Os06g08564.		Os06g0184800	LOC_Os06g08564.1				GO:0016021 - integral to membrane		
18173	_	OsRCI2-9	_	rare cold-inducible 2-9			6	RCI2 (rare cold-inducible 2) family gene. LOC_Os06g44220.		Os06g0651900	LOC_Os06g44220.1				GO:0016021 - integral to membrane		
18174	_	OsRCI2-11, OSR8, osr8	_	rare cold-inducible 2-11			9	RCI2 (rare cold-inducible 2) family gene. LOC_Os09g38560. Q9LRI7. AB030211.		Os09g0558100	LOC_Os09g38560.1				GO:0016021 - integral to membrane		
18175	_	OsRCI2-12	_	rare cold-inducible 2-12			9	RCI2 (rare cold-inducible 2) family gene. AACV01019593: 5757-6057.									
18176	CIPK32	OsCIPK32, OsSnRK3.34, SnRK3.34	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 32	CBL-interacting protein kinase 32, Sucrose nonfermenting-1-related protein kinase 3.34	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 32		12	Q2QY53.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0132200	LOC_Os12g03810.1, LOC_Os12g03810.2, LOC_Os12g03810.3				GO:0007165 - signal transduction, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
18177	CIPK33	OsCIPK33, OsSnRK3.32, SnRK3.32	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 33	CBL-interacting protein kinase 33, Sucrose nonfermenting-1-related protein kinase 3.32	CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 33		11	Q2RAX3.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0134300	LOC_Os11g03970.1, LOC_Os11g03970.2				GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0007165 - signal transduction, GO:0009737 - response to abscisic acid stimulus, GO:0004674 - protein serine/threonine kinase activity	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
18178	RFP1	OsRZFP34, OsRFP1, RZFP34, UCIP18, OsUCIP18, OsRING160, RING160	RING FINGER PROTEIN 1	RING zinc-finger protein 34, RING finger protein 1, OsUBC26 Interact Protein 18, RING-type E3 ubiquitin ligase 160	RING FINGER PROTEIN 1	osrzfp34	1	AY574990. GO:1990069: stomatal opening. TO:0020097: stomatal opening. the closest paralog of OsSRFP1.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0719100	LOC_Os01g52110.9, LOC_Os01g52110.8, LOC_Os01g52110.7, LOC_Os01g52110.5, LOC_Os01g52110.4, LOC_Os01g52110.1, LOC_Os01g52110.2, LOC_Os01g52110.3				GO:0019722 - calcium-mediated signaling, GO:0008270 - zinc ion binding, GO:0043266 - regulation of potassium ion transport, GO:0009738 - abscisic acid mediated signaling, GO:0005513 - detection of calcium ion		
18179	ABA2	OsABA2, OsSDR, SDR	ABA DEFICIENT 2	abscisic acid-deficient 2		osaba2	3	a xanthoxin dehydrogenase (XanDH).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0810800	LOC_Os03g59610.1				GO:0010301 - xanthoxin dehydrogenase activity, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0006561 - proline biosynthetic process, GO:0009750 - response to fructose stimulus, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0010182 - sugar mediated signaling, GO:0009688 - abscisic acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0005829 - cytosol	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content	
18180	SAP2	OsSAP2	STRESS ASSOCIATED PROTEIN GENE 2	stress-associated protein 2	STRESS ASSOCIATED PROTEIN 2		1	Q942F8. LOC_Os01g52030.	 Tolerance and resistance - Stress tolerance	Os01g0718000	LOC_Os01g52030.1				GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	
18181	SAP3	OsSAP3	STRESS ASSOCIATED PROTEIN GENE 3	stress-associated protein 3	STRESS ASSOCIATED PROTEIN 3		1	Q5JN07. LOC_Os01g56040.	 Tolerance and resistance - Stress tolerance	Os01g0765900	LOC_Os01g56040.1				GO:0006950 - response to stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000164 - stress trait	
18182	SAP4	OsSAP4	STRESS ASSOCIATED PROTEIN GENE 4	stress-associated protein 4	STRESS ASSOCIATED PROTEIN 4		2	Q6H7P8. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance	Os02g0195600	LOC_Os02g10200.1, LOC_Os02g10200.2				GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0010446 - response to alkalinity, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0006950 - response to stress, GO:0003677 - DNA binding	TO:0000481 - alkali sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000164 - stress trait	PO:0001170 - seed development stage 
18183	SAP5	OsSAP5	STRESS ASSOCIATED PROTEIN GENE 5	stress-associated protein 5	STRESS ASSOCIATED PROTEIN 5		2	Q6H754. GO:1904583: response to polyamine macromolecule. TO:0000931: seed quality trait.	 Tolerance and resistance - Stress tolerance,  Seed	Os02g0530300	LOC_Os02g32840.1				GO:0009753 - response to jasmonic acid stimulus, GO:0006950 - response to stress, GO:0009408 - response to heat, GO:0048316 - seed development, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009611 - response to wounding	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000164 - stress trait	PO:0001170 - seed development stage 
18184	SAP6	OsSAP6	STRESS ASSOCIATED PROTEIN GENE 6	stress-associated protein 6	STRESS ASSOCIATED PROTEIN 6		3	Q852K5. GO:1904583: response to polyamine macromolecule. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0000891: leaf wet weight.	 Tolerance and resistance - Stress tolerance	Os03g0792900	LOC_Os03g57890.1, LOC_Os03g57890.2, LOC_Os03g57890.3				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0003677 - DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0010446 - response to alkalinity, GO:0006950 - response to stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000227 - root length, TO:0000481 - alkali sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002681 - leaf curling, TO:0002662 - leaf rolling tolerance, TO:0000164 - stress trait, TO:0001034 - relative plant height	PO:0009005 - root , PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0020104 - leaf sheath , PO:0000003 - whole plant 
18185	SAP7	OsSAP7, OsiSAP7	STRESS ASSOCIATED PROTEIN GENE 7	stress-associated protein 7, Stress associated protein 7	STRESS ASSOCIATED PROTEIN 7		3	Q852K6. LOC_Os03g57900.	 Tolerance and resistance - Stress tolerance	Os03g0793000	LOC_Os03g57900.1				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0009611 - response to wounding, GO:0006950 - response to stress, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000164 - stress trait	
18186	SAP10	OsSAP10	STRESS ASSOCIATED PROTEIN GENE 10	stress-associated protein 10	STRESS ASSOCIATED PROTEIN 10		7	Q69LE0. LOC_Os07g07400.	 Tolerance and resistance - Stress tolerance	Os07g0169500	LOC_Os07g07400.1				GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009611 - response to wounding, GO:0006950 - response to stress, GO:0003677 - DNA binding	TO:0000276 - drought tolerance, TO:0000164 - stress trait, TO:0006001 - salt tolerance	
18187	SAP12	OsSAP12	STRESS ASSOCIATED PROTEIN GENE 12	stress-associated protein 12	STRESS ASSOCIATED PROTEIN 12		8	Q6Z541. LOC_Os08g33880.	 Tolerance and resistance - Stress tolerance	Os08g0436400	LOC_Os08g33880.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0006950 - response to stress, GO:0003677 - DNA binding	TO:0000164 - stress trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18188	SAP13	OsSAP13	STRESS ASSOCIATED PROTEIN GENE 13	stress-associated protein 13	STRESS ASSOCIATED PROTEIN 13		1	Q5JLA7. LOC_Os01g51990.	 Tolerance and resistance - Stress tolerance	Os01g0717601	LOC_Os01g51990.1				GO:0008270 - zinc ion binding, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0006950 - response to stress, GO:0009651 - response to salt stress	TO:0000164 - stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18189	SAP14	OsSAP14	STRESS ASSOCIATED PROTEIN GENE 14	stress-associated protein 14	STRESS ASSOCIATED PROTEIN 14		3	Q852K8. LOC_Os03g57920.	 Tolerance and resistance - Stress tolerance	Os03g0793300	LOC_Os03g57920.1				GO:0006950 - response to stress, GO:0042542 - response to hydrogen peroxide, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000164 - stress trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
18190	SAP15	OsSAP15	STRESS ASSOCIATED PROTEIN GENE 15	stress-associated protein 15	STRESS ASSOCIATED PROTEIN 15		5	Q0DJC7. LOC_Os05g23470.	 Tolerance and resistance - Stress tolerance	Os05g0299700	LOC_Os05g23470.1, LOC_Os05g23470.2, LOC_Os05g23470.3				GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0009753 - response to jasmonic acid stimulus	TO:0000276 - drought tolerance, TO:0000164 - stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	
18191	SAP17	OsSAP17	STRESS ASSOCIATED PROTEIN GENE 17	stress-associated protein 17	STRESS ASSOCIATED PROTEIN 17		9	Q6H595. GO:1904583: response to polyamine macromolecule.	 Tolerance and resistance - Stress tolerance	Os09g0385700	LOC_Os09g21710.1				GO:0009733 - response to auxin stimulus, GO:0006612 - protein targeting to membrane, GO:0008270 - zinc ion binding, GO:0009407 - toxin catabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0042538 - hyperosmotic salinity response, GO:0010583 - response to cyclopentenone, GO:0010363 - regulation of plant-type hypersensitive response, GO:0010286 - heat acclimation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009751 - response to salicylic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009723 - response to ethylene stimulus, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000164 - stress trait	PO:0001170 - seed development stage 
18192	SAP18	OsSAP18	STRESS ASSOCIATED PROTEIN GENE 18	stress-associated protein 18	STRESS ASSOCIATED PROTEIN 18		7	P0C282. LOC_Os07g07370.	 Tolerance and resistance - Stress tolerance	Os07g0169100	LOC_Os07g07370.1				GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0006950 - response to stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000164 - stress trait	
18194	_	NolmiR-23	_				2	One of 23 novel conserved miRNAs. target: LOC_Os07g22930. NolmiR-23 was located within the exon of AK121865 (LOC_Os02g43519, Os02g0651500) (Yang et al. 2014).									
18195	_	NolmiR-45	_					One of 23 novel conserved miRNAs.									
18196	_	NolmiR-50	_					One of 23 novel conserved miRNAs. target: Os08g06280 (LSD1 zinc finger domain containing protein, LSD1). NolmiR-50 was negatively correlated with its target Os08g06280 from seedling to booting (Yang et al. 2014).									
18197	_	NolmiR-53	_					One of 23 novel conserved miRNAs.									
18198	_	NolmiR-56	_					One of 23 novel conserved miRNAs. target: LOC_Os03g25650. NolmiR-56 displayed a consistent negative correlation with its target gene (Os03g25650) during the seedling to booting stages (Yang et al. 2014).									
18199	_	NolmiR-58	_					One of 23 novel conserved miRNAs.									
18200	_	NolmiR-62	_					One of 23 novel conserved miRNAs.									
18201	_	NolmiR-63	_					One of 23 novel conserved miRNAs.									
18202	_	NolmiR-74	_					One of 23 novel conserved miRNAs.									
18203	_	NolmiR-86	_					One of 23 novel conserved miRNAs. target: LOC_Os06g45510 (Yang et al. 2014).									
18204	_	NolmiR-95	_					One of 23 novel conserved miRNAs.									
18205	_	NolmiR-101	_					One of 23 novel conserved miRNAs.									
18206	_	NolmiR-105	_					One of 23 novel conserved miRNAs.									
18207	_	NolmiR-112	_					One of 23 novel conserved miRNAs.									
18208	_	NolmiR-142	_					One of 23 novel conserved miRNAs.									
18209	_	NolmiR-150	_					One of 23 novel conserved miRNAs.									
18210	_	NolmiR-162	_					One of 23 novel conserved miRNAs.									
18211	_	NolmiR-185	_					One of 23 novel conserved miRNAs.									
18212	_	NolmiR-230	_					One of 23 novel conserved miRNAs. target: LOC_Os12g01449 (Yang et al. 2014).									
18213	_	NolmiR-349	_					One of 23 novel conserved miRNAs. target: LOC_Os03g12570 (Yang et al. 2014).									
18214	_	NolmiR-432	_					One of 23 novel conserved miRNAs.									
18215	VTE2	OsVTE2, SGD1, OsSGD1, RTD1, OsRTD1, OsHPT, HPT	VITAMIN E DEFICIENT 2	VITAMIN E DEFICIENT 2, small grain and dwarf1, small grain and dwarf 1, Rice tocopherol de chancy 1, homogentisate phytyltransferase	HOMOGENTISATE PHYTYLTRANSFERASE	sgd1, sgd1-1, sgd1-2, rtd1	6	B7FA90. vitamin E biosynthetic enzyme. GO:0071555: cell wall organization. GO:0099402: plant organ development. TO:0000975: grain width.	 Vegetative organ - Culm,  Seed - Morphological traits,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0658900	LOC_Os06g44840.1, LOC_Os06g44840.2				GO:0044272 - sulfur compound biosynthetic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0009072 - aromatic amino acid family metabolic process, GO:0009106 - lipoate metabolic process, GO:0009108 - coenzyme biosynthetic process, GO:0000096 - sulfur amino acid metabolic process, GO:0006546 - glycine catabolic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0006733 - oxidoreduction coenzyme metabolic process, GO:0009535 - chloroplast thylakoid membrane, GO:0009416 - response to light stimulus, GO:0009117 - nucleotide metabolic process, GO:0031408 - oxylipin biosynthetic process, GO:0031347 - regulation of defense response, GO:0030154 - cell differentiation, GO:0009266 - response to temperature stimulus, GO:0019748 - secondary metabolic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019216 - regulation of lipid metabolic process, GO:0033231 - carbohydrate export, GO:0016021 - integral to membrane, GO:0009740 - gibberellic acid mediated signaling, GO:0015994 - chlorophyll metabolic process, GO:0010189 - vitamin E biosynthetic process, GO:0010176 - homogentisate phytyltransferase activity, GO:0009965 - leaf morphogenesis, GO:0009915 - phloem loading, GO:0009695 - jasmonic acid biosynthetic process, GO:0009739 - response to gibberellin stimulus, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0009826 - unidimensional cell growth, GO:0006979 - response to oxidative stress, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000145 - internode length, TO:0000435 - seed longevity, TO:0002657 - oxidative stress, TO:0000075 - light sensitivity, TO:0000346 - tiller number, TO:0000303 - cold tolerance, TO:0000152 - panicle number, TO:0000456 - spikelet number, TO:0002637 - leaf size, TO:0006032 - panicle size, TO:0000382 - 1000-seed weight, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000592 - 1000-dehulled grain weight, TO:0000399 - grain thickness, TO:0000734 - grain length, TO:0000565 - spikelets per panicle length, TO:0000040 - panicle length, TO:0000340 - total soluble sugar content, TO:0000166 - gibberellic acid sensitivity	PO:0006001 - phyllome 
18216	_	OsVTE3	_	VITAMIN E DEFICIENT 3			7	Q6ZLD3. vitamin E biosynthetic enzyme.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0179300	LOC_Os07g08200.1				GO:0051741 - 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity, GO:0009706 - chloroplast inner membrane, GO:0010189 - vitamin E biosynthetic process, GO:0016021 - integral to membrane, GO:0019761 - glucosinolate biosynthetic process, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0010236 - plastoquinone biosynthetic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0006979 - response to oxidative stress	TO:0002657 - oxidative stress	
18217	VTE4	OsVTE4, OsgammaTMT, gammaTMT	VITAMIN E DEFICIENT 4	gamma tocopherol methyltransferase	GAMMA TOCOPHEROL METHYLTRANSFERASE	TMT-1, TMT-2	2	Q6ZIK0. vitamin E biosynthetic enzyme.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0701600	LOC_Os02g47310.1				GO:0006979 - response to oxidative stress, GO:0051741 - 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity, GO:0010189 - vitamin E biosynthetic process, GO:0009507 - chloroplast, GO:0050342 - tocopherol O-methyltransferase activity, GO:0009416 - response to light stimulus	TO:0002657 - oxidative stress, TO:0000075 - light sensitivity	
18218	_	OsVTE5	_	VITAMIN E DEFICIENT 5			4	Q7XR51. vitamin E biosynthetic enzyme.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0670700	LOC_Os04g57500.1				GO:0031969 - chloroplast membrane, GO:0010276 - phytol kinase activity, GO:0016021 - integral to membrane, GO:0006979 - response to oxidative stress, GO:0010189 - vitamin E biosynthetic process	TO:0002657 - oxidative stress	
18219	_	OsNug2	_	Nuclear/Nucleolar GTPase 2			3	LOC_Os03g22890.	 Biochemical character	Os03g0352400	LOC_Os03g22890.1, LOC_Os03g22890.2				GO:0003924 - GTPase activity, GO:0042254 - ribosome biogenesis, GO:0005730 - nucleolus		
18220	_		_	import-1b subunit			5	LOC_Os05g06350. Q9SLX0.		Os05g0155500					GO:0008565 - protein transporter activity, GO:0005737 - cytoplasm, GO:0006606 - protein import into nucleus		
18221	_	OsSTK1	_	serine/threonine kinase 1			1	LOC_Os01g61620.		Os01g0832900	LOC_Os01g61620.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18222	_	OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3	_	gamma-ray induced LRR-RLK1, gamma-ray induced Leucine-rich repeat receptor-like kinase 1			2	LOC_Os02g12440.	 Tolerance and resistance - Stress tolerance	Os02g0215900	LOC_Os02g12440.1				GO:0009737 - response to abscisic acid stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0010332 - response to gamma radiation	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000161 - radiation response trait, TO:0000432 - temperature response trait, TO:0000172 - jasmonic acid sensitivity	
18223	RLCK25	OsRLCK25	RECEPTOR-LIKE CYTOPLASMIC KINASE 25	Receptor-like Cytoplasmic Kinase 25	RECEPTOR-LIKE CYTOPLASMIC KINASE 25		1	LOC_Os01g05960. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0152800	LOC_Os01g05960.1				GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010332 - response to gamma radiation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000161 - radiation response trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance	
18224	MRLK24	OsMRLK24	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 24	malectin/malectin-like receptor-like kinase 24	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 24		5	one of the leucine-rich repeat receptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Stress tolerance	Os05g0257100	LOC_Os05g16824.1, LOC_Os05g16824.2, LOC_Os05g16824.3, LOC_Os05g16824.4, LOC_Os05g16824.5				GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
18225	STLK	OsSTLK	SALT-TOLERANCE LRR-RLK	Salt-Tolerance LRR-RLK, Salt-Tolerance Leucine-rich repeat receptor-like kinase	SALT-TOLERANCE LRR-RLK		5	one of the leucine-rich repeat receptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation. GO:0072593: reactive oxygen species metabolic process. GO:2000037: regulation of stomatal complex patterning.	 Tolerance and resistance - Stress tolerance	Os05g0305900	LOC_Os05g24010.3, LOC_Os05g24010.1, LOC_Os05g24010.2				GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis, GO:0000165 - MAPKKK cascade, GO:0009651 - response to salt stress, GO:0010332 - response to gamma radiation, GO:0004674 - protein serine/threonine kinase activity, GO:0046466 - membrane lipid catabolic process, GO:0005524 - ATP binding, GO:0010375 - stomatal complex patterning	TO:0006001 - salt tolerance, TO:0000525 - sodium to potassium content ratio, TO:0000161 - radiation response trait	
18226	_		_				5	LOC_Os05g39410. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Stress tolerance	Os05g0471000	LOC_Os05g39410.1, LOC_Os05g39410.2, LOC_Os05g39410.3				GO:0016021 - integral to membrane, GO:0010332 - response to gamma radiation, GO:0005524 - ATP binding	TO:0000161 - radiation response trait	
18227	_		_				6	LOC_Os06g36320. one of the leucine-rich repeatreceptor-like kinase (LRR-RLK) genes which were induced by gamma irradiation.	 Tolerance and resistance - Stress tolerance	Os06g0557700	LOC_Os06g36320.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010332 - response to gamma radiation, GO:0005524 - ATP binding	TO:0000161 - radiation response trait	
18228	DNG701	ROS1C, ROS1c, Os ROS1C, DME2, OsDNG701, ROS1C/DNG701	DNA GLYCOSYLASE 701	REPRESSOR OF SILENCING 1c, DNA glycosylase/lyase DNG701, DNA glycosylase/lyase 701, DNA Glycosylase 701	DNA GLYCOSYLASE 701	dng701, dng701-1, dng701-2	5	FJ536320. AK070640. B8YIE8. ROS1 ortholog. 5-methylcytosine DNA glycosylase.	 Biochemical character	Os05g0445900	LOC_Os05g37350.1				GO:0080111 - DNA demethylation, GO:0051747 - DNA demethylase activity, GO:0003677 - DNA binding, GO:0006281 - DNA repair, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0019104 - DNA N-glycosylase activity, GO:0016829 - lyase activity, GO:0046872 - metal ion binding, GO:0006284 - base-excision repair		
18229	DNG704	OsROS1D, ROS1D, ROS1d, ROS1D/DNG704, OsDNG704	DNA GLYCOSYLASE 704	REPRESSOR OF SILENCING 1d, DNA glycosylase 704, glycosylase/lyase 704	DNA GLYCOSYLASE 704		5	ROS1 ortholog. GO:0035514: DNA demethylase activity.	 Biochemical character	Os05g0446600	LOC_Os05g37410.1				GO:0019104 - DNA N-glycosylase activity		
18230	DML3A	DML3a, OsDML3a	DEMETER-LIKE 3A	DEMETER-LIKE 3a	DEMETER-LIKE 3A		2	DML3 ortholog.	 Biochemical character	Os02g0496500	LOC_Os02g29380.1				GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006281 - DNA repair		
18231	DML3B	DML3b, OsDML3b	DEMETER-LIKE 3B	DEMETER-LIKE 3b	DEMETER-LIKE 3B		4	DML3 ortholog. GO:0035514: DNA demethylase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0357850	LOC_Os04g28860.1				GO:0006281 - DNA repair, GO:0080111 - DNA demethylation, GO:0019104 - DNA N-glycosylase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18232	_		_	(Expressed protein)			1	LOC_Os01g12330. metabolite: Smiglaside C.	 Biochemical character	Os01g0223300	LOC_Os01g12330.1						
18233	UGT706D1	UGT, OsUGT706D1	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706D1	UDP-dependent glucosyltransferase 706D1, flavone 7-O-glucosyltransferase	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706D1		1	LOC_Os01g53460. metabolite: Apigenin 7-O-glucoside.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0736300	LOC_Os01g53460.1				GO:0010224 - response to UV-B, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0033303 - quercetin O-glucoside biosynthetic process, GO:0033330 - kaempferol O-glucoside biosynthetic process	TO:0000601 - UV-B light sensitivity	
18234	_		_	Polyphenol oxidase			1	LOC_Os01g58070. metabolite: N-sinapoylputrescine.	 Biochemical character	Os01g0793100	LOC_Os01g58070.1				GO:0046872 - metal ion binding		
18235	ATASE1	Atase1, OsATASE1	AMIDO PHOSPHORIBOSYLTRANSFERASE 1	APB transferase, amido phosphoribosyltransferase 1	AMIDO PHOSPHORIBOSYLTRANSFERASE 1		1	LOC_Os01g65260. metabolite: Threonyl carbamoyl adenosine.	 Biochemical character	Os01g0873100	LOC_Os01g65260.1						
18236	_		_	DOPA dioxygenase			1	LOC_Os01g65680. metabolite: Arabidopyl ketoadipic acid.	 Biochemical character	Os01g0878800	LOC_Os01g65680.1				GO:0016701 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, GO:0006725 - cellular aromatic compound metabolic process, GO:0008198 - ferrous iron binding, GO:0008270 - zinc ion binding		
18237	_	UGT	_	flavone/flavanone C-hexosyltransferase			2	LOC_Os02g37690. metabolite: Luteolin 6-C-glucoside.	 Biochemical character	Os02g0589400	LOC_Os02g37690.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18238	_		_	Amino acid permease			3	LOC_Os03g25820. metabolite: l-alanine.	 Biochemical character	Os03g0374800	LOC_Os03g25820.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18239	_		_	Amidase			4	metabolite: Kynurenic acid.	 Biochemical character	Os04g0182875/Os04g0182900	LOC_Os04g10410.1				GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor		
18240	COMT7	OsASMT2, ASMT2, OsCOMT7	CAFFEIC ACID O-METHYLTRANSFERASE 7	O-methyltransferase, flavonoid methyltransferase, acetyl-serotonin methyltransferase 2, Caffeic Acid O-Methyltransferase 7	CAFFEIC ACID O-METHYLTRANSFERASE 7		4	metabolite: Methylapigenin C-hexoside.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0196200	LOC_Os04g11970.1				GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0007623 - circadian rhythm, GO:0008171 - O-methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0019438 - aromatic compound biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009416 - response to light stimulus, GO:0009646 - response to absence of light, GO:0032259 - methylation, GO:0005737 - cytoplasm, GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold	TO:0000075 - light sensitivity, TO:0000179 - biotic stress trait, TO:0000163 - auxin sensitivity, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity, TO:0006001 - salt tolerance, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0009047 - stem 
18241	AHT2	OsAHT2	AGMATINE HYDROXYCINNAMOYL TRANSFERASE 2 	agmatine hydroxycinnamoyl acyltransferase, agmatine N-hydroxycinnamoyl- transferase, feruloylagmatine synthase, agmatine hydroxycinnamoyl transferase 2	AGMATINE HYDROXYCINNAMOYL TRANSFERASE 2 		4	metabolite: N-feruloylagmatine. combination of the best substrates: feruloyl-CoA/agmatine.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0664600	LOC_Os04g56910.1				GO:0051607 - defense response to virus, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000148 - viral disease resistance	PO:0009005 - root , PO:0009046 - flower 
18242	UGT72F1		UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72F1	Hydroquinone UGT, UDP-glucose-dependent glycosyltransferase 72F1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72F1		5	LOC_Os05g12450. metabolite: Trans-zeatin N-glucoside.	 Biochemical character	Os05g0215300	LOC_Os05g12450.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups		
18244	_	UGT	_				6	LOC_Os06g17260. metabolite: 4-pyridoxic acid O-hexoside.	 Biochemical character	Os06g0283100	LOC_Os06g17260.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18245	_	UGT	_	flavone C-pentosyltransferase, UDP-glucuronosyl/UDP-glucosyl transferase family protein			6	metabolite: Methylnaringenin C-pentoside. One of the five candidate genes of QTL on chromosome 6 for seed and straw N content. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0289200	LOC_Os06g18140.1				GO:0042594 - response to starvation, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0000011 - nitrogen sensitivity	
18246	_	UGT	_	C-pentosyl flavone pentosyltransferase, anthocyanidin 3-O-glucosyltransferase			6	metabolite:Di-C,C-pentosyl-apigenin. One of the five candidate genes of QTL on chromosome 6 for seed and straw N content. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0289900	LOC_Os06g18670.1				GO:0042594 - response to starvation, GO:0009414 - response to water deprivation, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0000011 - nitrogen sensitivity, TO:0000276 - drought tolerance	
18247	PDX1.3A	OsPDX1.3a, OsPDX1.1, PDX1.1	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3A	SOR/SNZ protein, pyridoxine synthase, PYRIDOXINE BIOSYNTHESIS PROTEIN1.3a, Pyridoxal phosphate synthase protein 1.1	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3A		7	metabolite: Pyridoxine. Q69LA6. OsPDX1.1 in Nan et al. 2019, Liu et al. 2022. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0100200	LOC_Os07g01020.1				GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0042823 - pyridoxal phosphate biosynthetic process, GO:0003824 - catalytic activity, GO:0008615 - pyridoxine biosynthetic process, GO:0042742 - defense response to bacterium, GO:0042819 - vitamin B6 biosynthetic process	TO:0000203 - bacterial leaf streak disease resistance	
18248	UGT707A2	UGT, OsUGT707A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A2	UDP-glucosyl transferase, flavone 5-O-glucosyltransferase, UDP-dependent glycosyltransferase 707A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A2		7	LOC_Os07g32060. metabolite: Apigenin 5-O-glucoside.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0503900	LOC_Os07g32060.1				GO:0010224 - response to UV-B, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0000601 - UV-B light sensitivity	
18249	CYP71C3	OsCYP71C3	CYTOCHROME P450 71C3	Cytochrome P450, Cytochrome P450 71C3	CYTOCHROME P450 71C3		8	BGIOSGA027793. metabolite: (-)-trans-carveol.	 Biochemical character	Os08g0105400	LOC_Os08g01450.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
18250	TPS29	OsTPS29, OsCAS, CAS, OsTPS3, TPS3, TPS33, OsTPS33	TERPENE SYNTHASE 29	Terpene synthase 29, beta-caryophyllene synthetase, (E)-beta-caryophyllene synthase	TERPENE SYNTHASE 29	oscas-1, tps29, tps29-3, tps29-11	8	DQ872158.1 metabolite: Integrifoside A. OsTPS3 in Liang et al. 2017. TPS33 in Sun et al. 2022. GO:1901937: beta-caryophyllene biosynthetic process.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os08g0139700	LOC_Os08g04500.2, LOC_Os08g04500.1				GO:0050832 - defense response to fungus, GO:0009615 - response to virus, GO:0019048 - virus-host interaction, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051762 - sesquiterpene biosynthetic process, GO:0016102 - diterpenoid biosynthetic process, GO:0010333 - terpene synthase activity, GO:0051607 - defense response to virus, GO:0000287 - magnesium ion binding	TO:0000386 - rice ragged stunt virus resistance, TO:0000148 - viral disease resistance, TO:0000074 - blast disease	
18251	_	OsAT4c, AT4c	_	putrescine hydroxycinnamoyl acyltransferase, putrescine/agmatine hydroxycinnamoyl acyltransferase, putrescine/ agmatine N-hydroxycinnamoyltransferase, feruloylputrescine synthase			9	LOC_Os09g37200. metabolite: N-feruloylputrescine. combination of the best substrates: feruloyl-CoA/agmatine.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0544000	LOC_Os09g37200.1				GO:0080027 - response to herbivore, GO:0009611 - response to wounding, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000054 - animal damage resistance	PO:0009046 - flower , PO:0009005 - root 
18252	PDX1.3B	OsPDX1.3b, OsPDX1.2, PDX1.2	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3B	SOR/SNZ protein, pyridoxine synthase, PYRIDOXINE BIOSYNTHESIS PROTEIN1.3b, Pyridoxal phosphate synthase protein 1.2	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3B		10	metabolite: Pyridoxine O-glucoside. Q8W3D0. OsPDX1.2 in Nan et al. 2019, Liu et al. 2022, He et al. 2021. GO:0090333: regulation of stomatal closure.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0100700	LOC_Os10g01080.1				GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0008615 - pyridoxine biosynthetic process, GO:0042823 - pyridoxal phosphate biosynthetic process, GO:0042819 - vitamin B6 biosynthetic process, GO:0003824 - catalytic activity, GO:0042742 - defense response to bacterium	TO:0000203 - bacterial leaf streak disease resistance	
18253	_	OsSTA240, OsMATE39, MATE39	_	MATE efflux protein, multidrug and toxic compound extrusion 39			10	metabolite: Chlorogenic acid. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os10g0195000	LOC_Os10g11860.1				GO:0005886 - plasma membrane, GO:0015297 - antiporter activity, GO:0015238 - drug transporter activity, GO:0005773 - vacuole, GO:0016021 - integral to membrane		PO:0009066 - anther 
18254	TDC6	OsTDC6	TRYPTOPHAN DECARBOXYLASE 6	Decarboxylase, tryptophan decarboxylase 6	TRYPTOPHAN DECARBOXYLASE 6		10	metabolite: l-tyramine.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0380800	LOC_Os10g23900.1				GO:0009416 - response to light stimulus, GO:0006520 - cellular amino acid metabolic process, GO:0016831 - carboxy-lyase activity, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding	TO:0000075 - light sensitivity	
18255	_	UGT	_	UDP-glucosyltransferase			11	LOC_Os11g26950. metabolite: Chrysoeriol 7-O-rutinoside.	 Biochemical character	Os11g0457300	LOC_Os11g26950.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18256	TBT2	Os-TBT2, OsTBT2	TRYPTAMINE BENZOYL TRANSFERASE 2 	tryptamine benzoyl transferase 2	TRYPTAMINE BENZOYL TRANSFERASE 2 		11	LOC_Os11g42370. KX430022.	 Biochemical character	Os11g0643100	LOC_Os11g42370.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
18257	_		_	Transferase			11	LOC_Os11g42480. metabolite: p-coumaroyl-2-hydroxyputrescine.	 Biochemical character	Os11g0644500	LOC_Os11g42480.1						
18258	_		_	spermidine acyltransferase, spermidine hydroxycinnamoyl transferase			12	LOC_Os12g27220. metabolite: N-p-coumaroylspermidine.	 Biochemical character		LOC_Os12g27220				GO:0008216 - spermidine metabolic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
18259	_	OsRAD51B, OsRad51B	_	DNA repair protein RAD51B				one of five RAD51 paralogs.	 Biochemical character								
18260	_	OsRAD51C, OsRad51C	_	DNA repair protein RAD51C				one of five RAD51 paralogs.	 Biochemical character								
18261	_	OsXRCC2	_					one of five RAD51 paralogs.	 Biochemical character								
18262	_	OsXRCC3	_					one of five RAD51 paralogs.	 Biochemical character								
18263	CAF1-2	OsCAF1-2, OsCAF1Q, CAF1Q	CCR4-ASSOCIATED FACTOR 1-2	CCR4-associated factor 1-2, carbon catabolite repressor 4-associated factor 1-2, CCR4-associated factor 1Q, carbon catabolite repressor 4-associated factor 1Q	CCR4-ASSOCIATED FACTOR 1-2		3				LOC_Os03g53260.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18264	CAF1-3	OsCAF1-3, OsCAF1-4, CAF1-4	CCR4-ASSOCIATED FACTOR 1-3	CCR4-associated factor 1-3, carbon catabolite repressor 4-associated factor 1-3, CCR4-associated factor 1-4, carbon catabolite repressor 4-associated factor 1-4	CCR4-ASSOCIATED FACTOR 1-3		4	LOC_Os04g39260 (OsCAF1-3: LOC_Os04g39260.1, OsCAF1-4: LOC_Os04g39260.3).	 Tolerance and resistance - Stress tolerance	Os04g0467400	LOC_Os04g39260.1, LOC_Os04g39260.2, LOC_Os04g39260.3				GO:0006995 - cellular response to nitrogen starvation, GO:0009733 - response to auxin stimulus, GO:0004535 - poly(A)-specific ribonuclease activity, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0006397 - mRNA processing, GO:0006952 - defense response, GO:0009560 - embryo sac egg cell differentiation, GO:0003723 - RNA binding, GO:0046872 - metal ion binding, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
18265	CAF1-6	OsCAF1-6, OsCAF1D, CAF1D	CCR4-ASSOCIATED FACTOR 1-6	CCR4-associated factor 1-6, carbon catabolite repressor 4-associated factor 1-6, CCR4-associated factor 1D, carbon catabolite repressor 4-associated factor 1D	CCR4-ASSOCIATED FACTOR 1-6		6			Os06g0138400	LOC_Os06g04670.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18266	CAF1-7	OsCAF1-7, OsCAF1L, CAF1L	CCR4-ASSOCIATED FACTOR 1-7	CCR4-associated factor 1-7, carbon catabolite repressor 4-associated factor 1-7, CCR4-associated factor 1L, carbon catabolite repressor 4-associated factor 1L	CCR4-ASSOCIATED FACTOR 1-7		6			Os06g0503700	LOC_Os06g30770.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18267	CAF1-8	OsCAF1-8, OsCAF1K, CAF1K	CCR4-ASSOCIATED FACTOR 1-8	CCR4-associated factor 1-8, carbon catabolite repressor 4-associated factor 1-8, CCR4-associated factor 1K, carbon catabolite repressor 4-associated factor 1K	CCR4-ASSOCIATED FACTOR 1-8		6			Os06g0503900	LOC_Os06g30790.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18268	CAF1-9	OsCAF1-9, OsCAF1J, CAF1J	CCR4-ASSOCIATED FACTOR 1-9	CCR4-associated factor 1-9, carbon catabolite repressor 4-associated factor 1-9, CCR4-associated factor 1J, carbon catabolite repressor 4-associated factor 1J	CCR4-ASSOCIATED FACTOR 1-9		6			Os06g0536000	LOC_Os06g34520.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18269	CAF1-10	OsCAF1-10, OsCAF1C, CAF1C	CCR4-ASSOCIATED FACTOR 1-10	CCR4-associated factor 1-10, carbon catabolite repressor 4-associated factor 1-10, CCR4-associated factor 1C, carbon catabolite repressor 4-associated factor 1C	CCR4-ASSOCIATED FACTOR 1-10		7			Os07g0169800	LOC_Os07g07430.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18270	CAF1-11	OsCAF1-11	CCR4-ASSOCIATED FACTOR 1-11	CCR4-associated factor 1-11, carbon catabolite repressor 4-associated factor 1-11	CCR4-ASSOCIATED FACTOR 1-11		7		 Tolerance and resistance - Stress tolerance	Os08g0440200	LOC_Os08g34160.1				GO:0006397 - mRNA processing, GO:0006995 - cellular response to nitrogen starvation, GO:0046872 - metal ion binding, GO:0005737 - cytoplasm, GO:0004535 - poly(A)-specific ribonuclease activity, GO:0003723 - RNA binding		
18271	CAF1-14	OsCAF1-14, OsCAF1F, CAF1F	CCR4-ASSOCIATED FACTOR 1-14	CCR4-associated factor 1-14, carbon catabolite repressor 4-associated factor 1-14, CCR4-associated factor 1F, carbon catabolite repressor 4-associated factor 1F	CCR4-ASSOCIATED FACTOR 1-14		10			Os10g0123900	LOC_Os10g03530.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18272	CAF1-15	OsCAF1-15, OsCAF1I, CAF1I	CCR4-ASSOCIATED FACTOR 1-15	CCR4-associated factor 1-15, carbon catabolite repressor 4-associated factor 1-15, CCR4-associated factor 1I, carbon catabolite repressor 4-associated factor 1I	CCR4-ASSOCIATED FACTOR 1-15		10			Os10g0124200	LOC_Os10g03560.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18273	CAF1-16	OsCAF1-16, OsCAF1E, CAF1E	CCR4-ASSOCIATED FACTOR 1-16	CCR4-associated factor 1-16, carbon catabolite repressor 4-associated factor 1-16, CCR4-associated factor 1E, carbon catabolite repressor 4-associated factor 1E	CCR4-ASSOCIATED FACTOR 1-16		10			Os10g0128300	LOC_Os10g03880.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18274	CAF1-17	OsCAF1-17, OsCAF1M, CAF1M	CCR4-ASSOCIATED FACTOR 1-17	CCR4-associated factor 1-17, carbon catabolite repressor 4-associated factor 1-17, CCR4-associated factor 1M, carbon catabolite repressor 4-associated factor 1M	CCR4-ASSOCIATED FACTOR 1-17		10			Os10g0420600	LOC_Os10g28450.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18275	CAF1-18	OsCAF1-18, OsCAF1O, CAF1O	CCR4-ASSOCIATED FACTOR 1-18	CCR4-associated factor 1-18, carbon catabolite repressor 4-associated factor 1-18, CCR4-associated factor 1O, carbon catabolite repressor 4-associated factor 1O	CCR4-ASSOCIATED FACTOR 1-18		10			Os10g0421000	LOC_Os10g28520.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18276	CAF1-19	OsCAF1-19, OsCAF1P, CAF1P	CCR4-ASSOCIATED FACTOR 1-19	CCR4-associated factor 1-19, carbon catabolite repressor 4-associated factor 1-19, CCR4-associated factor 1P, carbon catabolite repressor 4-associated factor 1P	CCR4-ASSOCIATED FACTOR 1-19		10			Os10g0421200	LOC_Os10g28540.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
18277	CAF1-20	OsCAF1-20, OsCAF1R, CAF1R	CCR4-ASSOCIATED FACTOR 1-20	CCR4-associated factor 1-20, carbon catabolite repressor 4-associated factor 1-20, CCR4-associated factor 1R, carbon catabolite repressor 4-associated factor 1R	CCR4-ASSOCIATED FACTOR 1-20		10			Os10g0421600	LOC_Os10g28580.1				GO:0003676 - nucleic acid binding		
18278	CAF1-21	OsCAF1-21, OsCAF1N, CAF1N	CCR4-ASSOCIATED FACTOR 1-21	CCR4-associated factor 1-21, carbon catabolite repressor 4-associated factor 1-21, CCR4-associated factor 1N, carbon catabolite repressor 4-associated factor 1N	CCR4-ASSOCIATED FACTOR 1-21		10			Os10g0421700	LOC_Os10g28590.1				GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
18279	_	OsWOX9D	_	WUSCHEL-related homeobox 9D					 Other								
18280	_	OSK5	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 5, Oryza sativa SKP1-like gene 5			9	LOC_Os09g10260.	 Tolerance and resistance - Disease resistance	Os09g0274700	LOC_Os09g10260.1				GO:0009615 - response to virus, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000148 - viral disease resistance	
18281	OSK20	SKP20, OsSKP20	SKP1-LIKE GENE 20	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 20, Oryza sativa SKP1-like gene 20	SKP1-LIKE PROTEIN 20		9		 Character as QTL - Germination,  Tolerance and resistance - Disease resistance	Os09g0539500	LOC_Os09g36830.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009615 - response to virus, GO:0009845 - seed germination, GO:0019005 - SCF ubiquitin ligase complex	TO:0000148 - viral disease resistance	PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
18282	CUL1	OsCUL1, UCIP8, OsUCIP8	CULLIN 1	OsCullin1, Cullin 1, OsUBC26 Interact Protein 8	CULLIN 1		3			Os03g0652100	LOC_Os03g44900.3, LOC_Os03g44900.1, LOC_Os03g44900.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
18283	_	OSK2	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 2, Oryza sativa SKP1-like gene 2			10	LOC_Os10g30200.		Os10g0438100	LOC_Os10g30200.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18284	_	OSK3	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 3, Oryza sativa SKP1-like gene 3			2	LOC_Os02g13180.		Os02g0225100	LOC_Os02g13180.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18285	_	OSK6	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 6, Oryza sativa SKP1-like gene 6			7	LOC_Os07g05180.		Os07g0145300	LOC_Os07g05180.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18286	_	OSK10	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 10, Oryza sativa SKP1-like gene 10			6	LOC_Os06g02360.		Os06g0113800	LOC_Os06g02360.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18287	_	OSK15	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 15, Oryza sativa SKP1-like gene 15			8	LOC_Os08g28820.		Os08g0375700	LOC_Os08g28820.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18288	_	OSK19	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 19, Oryza sativa SKP1-like gene 19			7	LOC_Os07g43260.		Os07g0625600	LOC_Os07g43260.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18289	_	OSK21	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 21, Oryza sativa SKP1-like gene 21, SKP1-like protein 1B			7	LOC_Os07g22680. SKP1-like protein 1B in Zhang et al. 2015.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0409500	LOC_Os07g22680.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0007126 - meiosis		
18290	_	OSK28	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 28, Oryza sativa SKP1-like gene 28			7	LOC_Os07g43240.		Os07g0625400	LOC_Os07g43240.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18291	_	OsGT47A	_	glycosyltransferase gene family 47 member A, glycosyltransferase 47A			1	LOC_Os01g70190. Q8S1X8. GO:0071555: cell wall organization.	 Biochemical character	Os01g0926600	LOC_Os01g70190.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0045492 - xylan biosynthetic process		
18292	ACBP2	OsACBP2	ACYL-COA-BINDING PROTEIN 2	Acyl-CoA-binding protein 2	ACYL-COA-BINDING PROTEIN 2	osacbp2, osacbp2-LE18, osacbp2-LG76, osacbp2-AZ19, osacbp2-P05815	6	Q5VRM0. similar to human liver ACBP. GO:0090351: seedling development.	 Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Biochemical character,  Character as QTL - Germination,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os06g0115300	LOC_Os06g02490.1				GO:0009845 - seed germination, GO:0005829 - cytosol, GO:0008289 - lipid binding, GO:0009611 - response to wounding, GO:0048316 - seed development, GO:0009409 - response to cold, GO:0000062 - acyl-CoA binding, GO:0050832 - defense response to fungus	TO:0000396 - grain yield, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000397 - grain size, TO:0000146 - seed length, TO:0000149 - seed width, TO:0000181 - seed weight, TO:0000430 - germination rate, TO:0000488 - seed composition based quality trait, TO:0000590 - grain weight, TO:0000491 - fat and essential oil composition related trait	PO:0009089 - endosperm , PO:0009010 - seed , PO:0007010 - whole plant fruit ripening stage , PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0007057 - 0 seed germination stage , PO:0009009 - plant embryo 
18293	ACBP3	OsACBP3	ACYL-COA-BINDING PROTEIN 3	Acyl-CoA-binding protein 3	ACYL-COA-BINDING PROTEIN 3		3	Q75G87.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0576600	LOC_Os03g37960.1				GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0008289 - lipid binding, GO:0000062 - acyl-CoA binding, GO:0050832 - defense response to fungus, GO:0005829 - cytosol	TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0007016 - whole plant flowering stage 
18294	ACBP4	OsACBP4	ACYL-COA-BINDING PROTEIN 4	Acyl-CoA-binding protein 4	ACYL-COA-BINDING PROTEIN 4		4	A3AYR1. GO:0071782: endoplasmic reticulum tubular network.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0681900	LOC_Os04g58550.1				GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0008289 - lipid binding, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0005789 - endoplasmic reticulum membrane, GO:0000062 - acyl-CoA binding, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0032365 - intracellular lipid transport, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding	TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0025034 - leaf , PO:0007016 - whole plant flowering stage 
18295	ACBP5	OsACBP5	ACYL-COA-BINDING PROTEIN5	Acyl-CoA-binding protein 5	ACYL-COA-BINDING PROTEIN5		3	Q10P83. the homologue of AtACBP3. GO:0071782: endoplasmic reticulum tubular network.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0243600	LOC_Os03g14000.1, LOC_Os03g14000.2				GO:0009863 - salicylic acid mediated signaling pathway, GO:0015908 - fatty acid transport, GO:0005576 - extracellular region, GO:0005783 - endoplasmic reticulum, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005789 - endoplasmic reticulum membrane, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005635 - nuclear envelope, GO:0048046 - apoplast, GO:0006970 - response to osmotic stress, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0000062 - acyl-CoA binding, GO:0008289 - lipid binding, GO:0006858 - extracellular transport	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0002702 - cercospora leaf spot resistance, TO:0000074 - blast disease, TO:0000095 - osmotic response sensitivity, TO:0002668 - jasmonic acid content, TO:0000255 - sheath blight disease resistance, TO:0000664 - fungal blight disease resistance, TO:0000175 - bacterial blight disease resistance	PO:0025530 - reproductive shoot system development stage , PO:0009005 - root , PO:0025034 - leaf 
18296	ACBP6	OsACBP6	ACYL-COA-BINDING PROTEIN 6	Acyl-CoA-binding protein 6	ACYL-COA-BINDING PROTEIN 6	osacbp6	3	Q75LJ4. an mRNA target of MSTRG.5751.1. GO:2000377: regulation of reactive oxygen species metabolic process.	 Vegetative organ - Root,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0835600	LOC_Os03g61930.4, LOC_Os03g61930.1, LOC_Os03g61930.2, LOC_Os03g61930.3				GO:0005777 - peroxisome, GO:0006979 - response to oxidative stress, GO:0000062 - acyl-CoA binding, GO:0005829 - cytosol, GO:0006952 - defense response, GO:0008289 - lipid binding, GO:0050832 - defense response to fungus, GO:0048364 - root development, GO:0006635 - fatty acid beta-oxidation, GO:0009611 - response to wounding	TO:0000605 - hydrogen peroxide content, TO:0000656 - root development trait, TO:0002657 - oxidative stress, TO:0000135 - leaf length, TO:0002668 - jasmonic acid content, TO:0000655 - leaf development trait, TO:0000604 - fat and essential oil content, TO:0000074 - blast disease, TO:0000734 - grain length	PO:0007520 - root development stage , PO:0025034 - leaf , PO:0009005 - root 
18297	OFP1	OsOFP1, OsOFP01	OVATE FAMILY PROTEIN 1	OVATE family protein 1, OVATE-domain containing protein 1	OVATE FAMILY PROTEIN 1	ofp1, ofp1-1, ofp1-2	1		 Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os01g0226700	LOC_Os01g12690.1				GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus	TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0002730 - grain shape, TO:0000207 - plant height	PO:0009039 - glume 
18298	OFP2	OsOFP2, OsOFP03	OVATE FAMILY PROTEIN 2	OVATE family protein 2, ovate family protein 3, OVATE-domain containing protein 3	OVATE FAMILY PROTEIN 2		1	OsOFP03 in Yu et al. 2015. TO:0000748: leaf anatomy and morphology trait. GO:1901141: regulation of lignin biosynthetic process.	 Vegetative organ - Leaf,  Seed - Morphological traits,  Vegetative organ - Culm	Os01g0625900	LOC_Os01g43610.1				GO:0005634 - nucleus, GO:0009741 - response to brassinosteroid stimulus, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0005829 - cytosol, GO:0001944 - vasculature development, GO:0003700 - transcription factor activity, GO:0009809 - lignin biosynthetic process, GO:0042445 - hormone metabolic process	TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0002677 - brassinosteroid sensitivity, TO:0000492 - leaf shape, TO:0000484 - seed shape, TO:0000731 - lignin content, TO:0002637 - leaf size	PO:0005052 - plant callus 
18299	OFP3	OsOFP3, OsOFP04, OFP4	OVATE FAMILY PROTEIN 3	OVATE family protein 3, ovate family protein 4, OVATE-domain containing protein 4	OVATE FAMILY PROTEIN 3	ofp3, ofp3-1, ofp3-2	1	OsOFP04 in Yu et al. 2015. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. PO:0030123: panicle inflorescence. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf	Os01g0732300	LOC_Os01g53160.1				GO:0005737 - cytoplasm, GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0009826 - unidimensional cell growth	TO:0002677 - brassinosteroid sensitivity, TO:0002688 - leaf lamina joint bending, TO:0000734 - grain length, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0000207 - plant height	PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0020142 - stem internode , PO:0009005 - root 
18300	OFP4	OsOFP4, OsOFP06, OsOFP6, OFP6	OVATE FAMILY PROTEIN 4	OVATE family protein 4, ovate family protein 6, OVATE-domain containing protein 6	OVATE FAMILY PROTEIN 4	Osofp6-D, Osofp6-D-kn1, Osofp6-D-kn2	1	OsOFP06 in Yu et al. 2015. OsOFP6 in Ma et al. 2017, Sun et al. 2020, Zhu et al. 2024. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000993: cellulose content. GO:1901141: regulation of lignin biosynthetic process. GO:2001006: regulation of cellulose biosynthetic process. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os01g0823500	LOC_Os01g60810.1				GO:0009409 - response to cold, GO:0009834 - secondary cell wall biogenesis, GO:0016020 - membrane, GO:0009741 - response to brassinosteroid stimulus, GO:0009926 - auxin polar transport, GO:0009739 - response to gibberellin stimulus, GO:0048527 - lateral root development, GO:0009742 - brassinosteroid mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0045492 - xylan biosynthetic process, GO:0009414 - response to water deprivation, GO:0010311 - lateral root formation, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0030244 - cellulose biosynthetic process, GO:0009809 - lignin biosynthetic process	TO:0000430 - germination rate, TO:0000639 - seed fertility, TO:0002730 - grain shape, TO:0000346 - tiller number, TO:0001012 - lateral root length, TO:0001013 - lateral root number, TO:0000149 - seed width, TO:0000146 - seed length, TO:0000303 - cold tolerance, TO:0006032 - panicle size, TO:0000455 - seed set percent, TO:0002689 - leaf sheath length, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending, TO:0000731 - lignin content, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance, TO:0000207 - plant height	PO:0009039 - glume , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0020142 - stem internode , PO:0025034 - leaf 
18301	_	OsOFP5, OsOFP07	_	OVATE family protein 5, ovate family protein 7, OVATE-domain containing protein 7			1	LOC_Os01g64410. OsOFP07 in Yu et al. 2015.		Os01g0863800	LOC_Os01g64410.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18302	_	OsOFP6, OsOFP09	_	OVATE family protein 6, ovate family protein 9, OVATE-domain containing protein 9			2	LOC_Os02g45620. OsOFP09 in Yu et al. 2015.		Os02g0679700	LOC_Os02g45620.1				GO:0005634 - nucleus		PO:0009005 - root 
18303	_	OsOFP7, OsOFP11	_	OVATE family protein 7, ovate family protein 11, OVATE-domain containing protein 11			3	LOC_Os03g06350. OsOFP11 in Yu et al. 2015.		Os03g0159400	LOC_Os03g06350.1				GO:0010431 - seed maturation, GO:0005634 - nucleus	TO:0002661 - seed maturation	PO:0007042 - whole plant fruit formation stage , PO:0009001 - fruit 
18304	_	OsOFP8, OsOFP12	_	OVATE family protein 8, ovate family protein 12, OVATE-domain containing protein 12			3	LOC_Os03g10150. OsOFP12 in Yu et al. 2015.		Os03g0197900	LOC_Os03g10150.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18305	_	OsOFP9, OsOFP13	_	OVATE family protein 9, ovate family protein 13, OVATE-domain containing protein 13			3	LOC_Os03g21870. OsOFP13 in Yu et al. 2015.		Os03g0336900	LOC_Os03g21870.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18306	_	OsOFP10, OsOFP14, OFP10, OFP14	_	OVATE family protein 10, ovate family protein 14, OVATE-domain containing protein 14			4	LOC_Os04g33870. OsOFP14 in Yu et al. 2015, Zhao et al. 2018.		Os04g0415100	LOC_Os04g33870.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0005634 - nucleus		PO:0009049 - inflorescence 
18307	_	OsOFP11, OsOFP16	_	OVATE family protein 11, ovate family protein 16, OVATE-domain containing protein 16			4	LOC_Os04g48830. OsOFP16 in Yu et al. 2015.		Os04g0577700	LOC_Os04g48830.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
18308	_	OsOFP12, OsOFP17	_	OVATE family protein 12, ovate family protein 17, OVATE-domain containing protein 17			4	LOC_Os04g58820. OsOFP17 in Yu et al. 2015.		Os04g0685000	LOC_Os04g58820.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18309	_	OsOFP13, OsOFP19, OFP13, OFP19	_	OVATE family protein 13, ovate family protein 19, OVATE-domain containing protein 19			5	LOC_Os05g25910. OsOFP19 in Yu et al. 2015, Yang et al. 2018. GO:0090511: periclinal cell division.	 Vegetative organ - Culm,  Vegetative organ - Root,  Vegetative organ - Leaf	Os05g0324600	LOC_Os05g25910.1				GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling	TO:0000258 - leaf thickness, TO:0000207 - plant height, TO:0000051 - stem strength	PO:0020033 - coleoptile 
18310	OFP14	OsOFP14, OsOFP21	OVATE FAMILY PROTEIN 14	OVATE family protein 14, ovate family protein 21, OVATE-domain containing protein 21	OVATE FAMILY PROTEIN 14		5	OsOFP21 in Yu et al. 2015.		Os05g0441400	LOC_Os05g36990.1				GO:0005634 - nucleus		PO:0009005 - root 
18311	_	OsOFP15, OsOFP22	_	OVATE family protein 15, ovate family protein 22, OVATE-domain containing protein 22			5	LOC_Os05g39950. OsOFP22 in Yu et al. 2015.		Os05g0477200	LOC_Os05g39950.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0005052 - plant callus 
18312	_	OsOFP16, OsOFP24	_	OVATE family protein 16, ovate family protein 24, OVATE-domain containing protein 24			7	LOC_Os07g48150. OsOFP24 in Yu et al. 2015.		Os07g0679200	LOC_Os07g48150.1				GO:0005634 - nucleus, GO:0010431 - seed maturation, GO:0003677 - DNA binding	TO:0002661 - seed maturation	PO:0009001 - fruit , PO:0007042 - whole plant fruit formation stage 
18313	_	OsOFP17, OsOFP27	_	OVATE family protein 17, ovate family protein 27, OVATE-domain containing protein 27			10	LOC_Os10g38880. OsOFP27 in Yu et al. 2015.		Os10g0532600	LOC_Os10g38880.1				GO:0005634 - nucleus		PO:0009005 - root 
18314	_	OsOFP18, OsOFP28	_	OVATE family protein 18, ovate family protein 28, OVATE-domain containing protein 28			11	LOC_Os11g05770. OsOFP28 in Yu et al. 2015.		Os11g0156300	LOC_Os11g05770.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
18315	_	OsOFP19, OsOFP30	_	OVATE family protein 19, ovate family protein 30, OVATE-domain containing protein 30			12	LOC_Os12g06150. OsOFP30 in Yu et al. 2015.		Os12g0158300	LOC_Os12g06150.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18316	_	OsOFP20, OsOFP31	_	OVATE family protein 20, ovate family protein 31, OVATE-domain containing protein 31			12	LOC_Os12g06160. OsOFP31 in Yu et al. 2015.		Os12g0158400	LOC_Os12g06160.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18317	OFP21	OsOFP21, OsOFP10	OVATE FAMILY PROTEIN 21	OVATE family protein 21, ovate family protein 10, OVATE-domain containing protein 10	OVATE FAMILY PROTEIN 21		3	OsOFP10 in Yu et al. 2015. LOC_Os03g03480 (a DUF623 domain containing protein) might be a candidate gene involved in panicle length (one of candidate gene in qPL3-3) (Bai et al. 2021).		Os03g0126450	LOC_Os03g03480.1				GO:0005634 - nucleus		PO:0009005 - root 
18318	_	OsOFP22, OsOFP05	_	OVATE family protein 22, ovate family protein 5, OVATE-domain containing protein 5			1	LOC_Os01g54570. OsOFP05 in Yu et al. 2015.			LOC_Os01g54570				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18319	_	OsOFP23, OsOFP20	_	OVATE family protein 23, ovate family protein 20, OVATE-domain containing protein 20			5	LOC_Os05g36970. OsOFP20 in Yu et al. 2015.		Os05g0440900	LOC_Os05g36970.1				GO:0005634 - nucleus		PO:0009049 - inflorescence 
18320	_	OsOFP24, OsOFP15	_	OVATE family protein 24, ovate family protein 15, OVATE-domain containing protein 15			4	LOC_Os04g37510.  OsOFP15 in Yu et al. 2015.		Os04g0447900	LOC_Os04g37510.1				GO:0009741 - response to brassinosteroid stimulus, GO:0005634 - nucleus	TO:0002677 - brassinosteroid sensitivity	PO:0005052 - plant callus 
18321	_	OsOFP25, OsOFP23	_	OVATE family protein 25, ovate family protein 23, OVATE-domain containing protein 23			5	LOC_Os05g44090. OsOFP23 in Yu et al. 2015.		Os05g0517100	LOC_Os05g44090.1				GO:0005634 - nucleus		PO:0025034 - leaf 
18322	_	OsOFP26, OsOFP29	_	OVATE family protein 26, ovate family protein 29, OVATE-domain containing protein 29			11	LOC_Os11g05780. OsOFP29 in Yu et al. 2015.		Os11g0156401	LOC_Os11g05780.1				GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity	PO:0009039 - glume 
18323	_	OsOFP27, OsOFP02	_	OVATE family protein 27, ovate family protein 2, OVATE-domain containing protein 2			1	LOC_Os01g40970. OsOFP02 in Yu et al. 2015.		Os01g0592800	LOC_Os01g40970.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0005634 - nucleus		PO:0009005 - root 
18324	_	OsOFP28, OsOFP25	_	OVATE family protein 28, ovate family protein 25, OVATE-domain containing protein 25			8	LOC_Os08g01190. OsOFP25 in Yu et al. 2015.		Os08g0102400	LOC_Os08g01190.1				GO:0005634 - nucleus		PO:0005052 - plant callus 
18325	_	OsOFP29, OsOFP18	_	OVATE family protein 29, ovate family protein 18, OVATE-domain containing protein 18			5	LOC_Os05g12808. OsOFP18 in Yu et al. 2015.			LOC_Os05g12808				GO:0005634 - nucleus		PO:0009005 - root 
18326	_	OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30	_	OVATE family protein 30, ovate family protein 8, OVATE-domain containing protein 8		Osofp8	1	LOC_Os01g64430. Q94CV1. OsOFP08 (OsOFP8) in Yu et al. 2015 and Yang et al. 2016. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. GO:1900457: regulation of brassinosteroid mediated signaling pathway. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf	Os01g0864000	LOC_Os01g64430.1				GO:0040008 - regulation of growth, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0005737 - cytoplasm	TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending	PO:0005052 - plant callus 
18327	ESD1	OsOFP31, OsOFP26, OFP31, OFP26, OsSTA245, Os ESD1	EMBRYO SAC DEVELOPMENT 1	OVATE family protein 31, ovate family protein 26, OVATE-domain containing protein 26, Embryo Sac Development 1	OVATE FAMILY PROTEIN 31	esd1, esd1-m1, esd1-m2, esd1-m3	10	OsOFP26 in Yu et al. 2015. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Character as QTL - Yield and productivity	Os10g0431700	LOC_Os10g29610.1				GO:0003700 - transcription factor activity, GO:0005737 - cytoplasm, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0009553 - embryo sac development	TO:0000449 - grain yield per plant, TO:0000358 - female sterility, TO:0000180 - spikelet fertility, TO:0000223 - pistil anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0000455 - seed set percent	PO:0009066 - anther , PO:0001083 - inflorescence development stage , PO:0020003 - plant ovule , PO:0005052 - plant callus 
18328	_	OsOFP32	_	OVATE family protein 32			7	LOC_Os07g48140.		Os07g0679100	LOC_Os07g48140.1						
18329	_	OsOFP33	_	OVATE family protein 33			5	LOC_Os05g26210.		Os05g0328300	LOC_Os05g26210.1						
18330	_	OsMAGO1, MAGO1	_	MAGO NASHI 1			8	exon junction complex (EJC) core subunit. KF051011. GO:0044822: poly(A) RNA binding.	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0107900	LOC_Os08g01660.1, LOC_Os08g01660.2, LOC_Os08g01660.3				GO:0035145 - exon-exon junction complex, GO:0008380 - RNA splicing, GO:0009908 - flower development	TO:0000215 - stamen anatomy and morphology trait, TO:0000622 - flower development trait	
18332	_	OsY14b, Y14b	_				3	KF051017. exon junction complex (EJC) core subunit.	 Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance	Os03g0809900	LOC_Os03g59550.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006396 - RNA processing, GO:0009790 - embryonic development, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0000166 - nucleotide binding, GO:0003723 - RNA binding	TO:0000259 - heat tolerance, TO:0000620 - embryo development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18333	_	OsY14a, Y14a	_				5	KF051016. exon junction complex (EJC) core subunit.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0140500	LOC_Os05g04850.1, LOC_Os05g04850.2				GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0009555 - pollen development	TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000207 - plant height, TO:0000576 - stem length	
18334	_	OsZFP6, ZFP6	_	CCHC-type zinc finger protein 6			2		 Tolerance and resistance - Stress tolerance	Os02g0552700	LOC_Os02g34760.1				GO:0009628 - response to abiotic stimulus, GO:0003676 - nucleic acid binding	TO:0000168 - abiotic stress trait	
18335	SIT1	OsSIT1	SALT INTOLERANCE1	Salt Intolerance 1		sit1-1, SIT1-5	2	a Receptor-Like Kinase. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance	Os02g0640500	LOC_Os02g42780.1				GO:0009873 - ethylene mediated signaling pathway, GO:0009693 - ethylene biosynthetic process, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content	PO:0009005 - root 
18336	_	SIT2	_	Salt Intolerance 2		sit2-D	4	a Receptor-Like Kinase. LOC_Os02g42780. 	 Tolerance and resistance - Stress tolerance	Os04g0531400	LOC_Os04g44900.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
18337	SIT3	OsSIT3, OsBDR1, BDR1	SALT INTOLERANCE 3	Salt Intolerance 3, Blast Disease Resistance 1		bdr1, bdr1-4, bdr1-5	7	a Receptor-Like Kinase. GO:1900150: regulation of defense response to fungus. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0575700	LOC_Os07g38810.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0016114 - terpenoid biosynthetic process	TO:0006001 - salt tolerance, TO:0000074 - blast disease	
18338	SPED1	OsSPED1, PLS22, OsPLS22	SHORTENED PEDICELS 1	SHORTENED PEDICELS AND/OR SECONDARY BRANCHES 1, shortened pedicels-D, shortened pedicels 1, PLS-class Pentatricopeptide Repeat Protein 22, PLS-type PPR protein 22	PLS-TYPE PENTATRICOPEPTIDE REPEAT PROTEIN 22	sped1-D	6	Pentatricopeptide Repeat Protein.	 Reproductive organ - Panicle, Mode of branching,  Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity	Os06g0597500	LOC_Os06g39650.1				GO:0009451 - RNA modification	TO:0000050 - inflorescence branching, TO:0000142 - secondary branching of inflorescence, TO:0000421 - pollen fertility, TO:0000371 - yield trait, TO:0000089 - panicle type, TO:0000630 - pedicel length	
18339	_	GID1L2	_	GID1L2 family gene, gibberellin receptor GID1L2-like gene			6	LOC_Os06g11130.	 Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity	Os06g0214800	LOC_Os06g11130.1				GO:0010476 - gibberellin-mediated signaling, GO:0016787 - hydrolase activity	TO:0000166 - gibberellic acid sensitivity, TO:0000142 - secondary branching of inflorescence, TO:0000630 - pedicel length, TO:0000089 - panicle type, TO:0000050 - inflorescence branching, TO:0000371 - yield trait	
18340	_	P/TMS12-1, osa-smR5864w, osa-smR5864m	_	photo- or thermo-sensitive genic male sterility locus on chromosome 12-1, small RNA osa-smR5864w			12		 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000067 - genic male sterility-thermo sensitive, TO:0000009 - genic male sterility-photoperiod sensitive	
18341	_	OsHID1	_	HIDDEN TREASURE 1			3	rice homolog of Arabidopsis HID1. noncoding RNA. ncRNA.							GO:0010114 - response to red light, GO:0010099 - regulation of photomorphogenesis	TO:0000158 - red light sensitivity	
18342	CCD1	OsCCD1	CAROTENOID CLEAVAGE DIOXYGENASE 1	carotenoid cleavage dioxygenase 1	CAROTENOID CLEAVAGE DIOXYGENASE 1		12		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Coloration - Others	Os12g0640600	LOC_Os12g44310.1, LOC_Os12g44310.2				GO:0016121 - carotene catabolic process, GO:0005794 - Golgi apparatus, GO:0016124 - xanthophyll catabolic process, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0006098 - pentose-phosphate shunt, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0005737 - cytoplasm, GO:0045549 - 9-cis-epoxycarotenoid dioxygenase activity, GO:0046872 - metal ion binding, GO:0009506 - plasmodesma, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0006950 - response to stress, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0043289 - apocarotenoid biosynthetic process, GO:0005774 - vacuolar membrane, GO:0005886 - plasma membrane	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000114 - flooding related trait, TO:0000496 - carotenoid content	PO:0009010 - seed , PO:0008037 - seedling , PO:0009006 - shoot system , PO:0009030 - carpel , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0007131 - seedling development stage , PO:0009049 - inflorescence 
18343	CCD8D	OsCCD8d, ZAS-L1, OsZAS-L1, OsZAS1b, ZAS1b, OsCCD8c, CCD8c	CAROTENOID CLEAVAGE DIOXYGENASE 8D	carotenoid cleavage dioxygenase 8d, ZAS-Like 1, Zaxinone Synthase-Like 1, Zaxinone Synthase 1b	CAROTENOID CLEAVAGE DIOXYGENASE 8D		8	OsCCD8c in Dai et al. 2024.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0369800	LOC_Os08g28240.1				GO:0009413 - response to flooding, GO:0046872 - metal ion binding, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	TO:0000114 - flooding related trait	PO:0007632 - seed maturation stage , PO:0009006 - shoot system 
18344	PPC2B	Osppc2b, ppc2b	PHOSPHOENOLPYRUVATE CARBOXYLASE 2B	phosphoenolpyruvate carboxylase 2b, PEPCase 2b	PHOSPHOENOLPYRUVATE CARBOXYLASE 2B		9	C3-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0315700	LOC_Os09g14670.1				GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0031667 - response to nutrient levels	TO:0000276 - drought tolerance, TO:0000011 - nitrogen sensitivity, TO:0000480 - nutrient sensitivity	
18345	PPC2	Osppc3, Osppc2, ppc3, ppc2	PHOSPHOENOLPYRUVATE CARBOXYLASE 2	phosphoenolpyruvate carboxylase 3, PEPCase 3, phosphoenolpyruvate carboxylase 2, PEPCase 2	PHOSPHOENOLPYRUVATE CARBOXYLASE 2		1	LC006121. C3-type isozyme. a plant-type Phosphoenolpyruvate Carboxylase. Osppc3 in Masumoto et al. 2010, Muramatsu et al.  2014 and Yamamoto et al. 2014, Lian et al. 2021, Yamamoto  et al. 2022. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed	Os01g0758300	LOC_Os01g55350.1				GO:0042594 - response to starvation, GO:0031667 - response to nutrient levels, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0048316 - seed development	TO:0000480 - nutrient sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000653 - seed development trait	PO:0004506 - developing seed stage 
18346	PPPCB	Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC	PHOSPHOENOLPYRUVATE CARBOXYLASE B	phosphoenolpyruvate carboxylase b, PEPCase b, bacterial-type PEPC, bacterial-type Phosphoenolpyruvate carboxylase	PHOSPHOENOLPYRUVATE CARBOXYLASE B		1	a mature anther-preferentially expressed gene. a bacterial-type phosphoenolpyruvate carboxylase.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os01g0110700	LOC_Os01g02050.1				GO:0006099 - tricarboxylic acid cycle, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0008964 - phosphoenolpyruvate carboxylase activity, GO:0005737 - cytoplasm		PO:0009066 - anther , PO:0025281 - pollen 
18347	UGT706C1	OsUGT706C1	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C1	UDP-dependent glucosyltransferase 706C1, UDP-dependent glycosyltransferase 706C1	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C1		1	LOC_Os01g53430.	 Biochemical character	Os01g0736100	LOC_Os01g53430.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0033330 - kaempferol O-glucoside biosynthetic process, GO:0033303 - quercetin O-glucoside biosynthetic process		
18348	UGT707A3	OsUGT707A3	UDP-DEPENDENT GLUCOSYLTRANSFERASE 707A3	UDP-dependent glucosyltransferase 707A3, UDP-dependent glycosyltransferase 707A3, uridine diphosphate-dependent glucosyltransferase 707A3	UDP-DEPENDENT GLUCOSYLTRANSFERASE 707A3		7	GO:1901732: quercetin metabolic process.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os07g0503500 	LOC_Os07g32020.1				GO:0033303 - quercetin O-glucoside biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0033330 - kaempferol O-glucoside biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0002213 - defense response to insect, GO:0009813 - flavonoid biosynthetic process, GO:0051554 - flavonol metabolic process	TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance, TO:0000290 - flavonoid content, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0005010 - anther septum , PO:0009047 - stem 
18349	_	UGT709A4	_	UDP-dependent glucosyltransferase 709A4			7		 Biochemical character	Os07g0490100	LOC_Os07g30760.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18350	_	OsEnS-3	_	endosperm-specific gene 3			1	LOC_Os01g13360.	 Biochemical character	Os01g0234850	LOC_Os01g13360.1, LOC_Os01g13360.2				GO:0016773 - phosphotransferase activity, alcohol group as acceptor		
18351	LEA1B	OsEnS-4, OsLEA1b, LEA1b	LATE EMBRYOGENESIS ABUNDANT PROTEIN 1B	endosperm-specific gene 4	LATE EMBRYOGENESIS ABUNDANT PROTEIN 1B	oslea1b, oslea1b-1, oslea1b-2	1	TO:0000975: grain width. GO:2000377: regulation of reactive oxygen species metabolic process.	 Character as QTL - Yield and productivity,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os01g0276300	LOC_Os01g16920.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0048316 - seed development, GO:0005634 - nucleus, GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0010581 - regulation of starch biosynthetic process	TO:0000590 - grain weight, TO:0000266 - chalky endosperm, TO:0002658 - starch grain synthesis, TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000462 - gelatinization temperature, TO:0000516 - relative root length, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000211 - gel consistency, TO:0006002 - proline content, TO:0000104 - floury endosperm, TO:0000196 - amylose content, TO:0000604 - fat and essential oil content, TO:0000598 - protein content, TO:0000696 - starch content, TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0002656 - starch grain shape, TO:0000487 - endosperm color, TO:0001034 - relative plant height, TO:0000376 - consistency viscosity	PO:0007632 - seed maturation stage , PO:0009010 - seed , PO:0009089 - endosperm 
18352	HAP5I	OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10	HAP5I SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	endosperm-specific gene 5, NUCLEAR FACTOR-Y subunit C10, NUCLEAR FACTOR-Y subunit NF-YC10, NF-YC transcription factor 10, NF-YC subunit 10, NF-YC family 10	HAP5I SUBUNIT OF CCAAT-BOX BINDING COMPLEX 		1			Os01g0346900					GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009089 - endosperm 
18353	_	OsEnS-6	_	endosperm-specific gene 6			1	LOC_Os01g25450.		Os01g0356800	LOC_Os01g25450.1				GO:0005525 - GTP binding		
18354	_	OsEnS-10	_	endosperm-specific gene 10			1	LOC_Os01g41720.	 Biochemical character,  Seed - Morphological traits - Endosperm	Os01g0601000	LOC_Os01g41720.1				GO:0046873 - metal ion transmembrane transporter activity, GO:0016020 - membrane		
18355	_	OsEnS-14	_	endosperm-specific gene 14			1	LOC_Os01g54040.	 Biochemical character	Os01g0743600	LOC_Os01g54040.1, LOC_Os01g54040.2, LOC_Os01g54040.3				GO:0004176 - ATP-dependent peptidase activity		
18356	_	OsEnS-15, EnS-15	_	endosperm-specific gene 15			1	LOC_Os01g55630. Glutelin.	 Seed - Physiological traits - Storage substances	Os01g0761800	LOC_Os01g55630.1				GO:0045735 - nutrient reservoir activity		
18357	_	OsEnS-17	_	endosperm-specific gene 17			1	LOC_Os01g58660.			LOC_Os01g58660						
18358	_	OsEnS-18, EnS-18, Os6	_	endosperm-specific gene 18, cytokinin glycosyltransferase			1	LOC_Os01g59100.	 Biochemical character	Os01g0805400	LOC_Os01g59100.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18359	_	OsEnS-19	_	endosperm-specific gene 19			1	LOC_Os01g59200.		Os01g0806400	LOC_Os01g59200.1						
18360	PPLAIIALPHA	OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT	PATATIN-RELATED PHOSPHOLIPASE A II ALPHA	endosperm-specific gene 20, Patatin-related phospholipase A II alpha, patatin-like protein 2, patatin-like protein	PATATIN-RELATED PHOSPHOLIPASE A II ALPHA		1		 Biochemical character	Os01g0898500	LOC_Os01g67310.1, LOC_Os01g67310.2				GO:0006629 - lipid metabolic process, GO:0016298 - lipase activity, GO:0006952 - defense response, GO:0016042 - lipid catabolic process		
18361	OSCA2.5	OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2, OsERD, ERD	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.5	endosperm-specific gene 22, Hyperosmolality-gated calcium-permeable channel 2.5, DUF221 Domain containing Protein 2, reduced hyperosmolality-induced Ca2+ increase 2.5, Early-responsive to dehydration stress protein	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.5		1	OSCA1 homologue. KJ920379. Oryza brachyantha ortholog: ObOSCA2.5, Oryza glaberrima ortholog: OgOSCA2.5. AtERD4 ortholog.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Seed,  Biochemical character	Os01g0950900	LOC_Os01g72210.1, LOC_Os01g72210.2				GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0009740 - gibberellic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0048364 - root development, GO:0005783 - endoplasmic reticulum, GO:0009686 - gibberellin biosynthetic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000653 - seed development trait, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0007022 - seed imbibition stage , PO:0007520 - root development stage , PO:0001170 - seed development stage 
18362	DEFL2	OsEnS-25, OsDEFL2, OsDf-02, Df-02, DEFL1, OsDEFL1	DEFENSIN-LIKE 2	endosperm-specific gene 25, defensin-like 2, defensin-like 1	DEFENSIN-LIKE 2		2	DEFL1 in Gu et al. 2022.	 Tolerance and resistance	Os02g0171500	LOC_Os02g07550.1				GO:0006952 - defense response		
18363	CYP71X12	OsEnS-26, EnS-26, Os CYP71X12	CYTOCHROME P450 71X12	endosperm-specific gene 26, cytochrome P450 71X12	CYTOCHROME P450 71X12		2	LOC_Os02g09190. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os02g0184600	LOC_Os02g09190.1				GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding		
18364	CYP71X3	OsEnS-27, OsCYP71X3	CYTOCHROME P450 71X3	endosperm-specific gene 27, Cytochrome P450 71X3	CYTOCHROME P450 71X3		2	BGIOSGA007688.	 Biochemical character	Os02g0185500	LOC_Os02g09270.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
18365	CYP71X4	OsEnS-28, OsCYP71X4	CYTOCHROME P450 71X4	endosperm-specific gene 28, Cytochrome P450 71X4	CYTOCHROME P450 71X4		2	BGIOSGA007691.	 Biochemical character	Os02g0186200	LOC_Os02g09320.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
18366	GLUB6	OsEnS-32, EnS-32, GluB6, OsGluB6	GLUTELIN B6	endosperm-specific gene 32, Glutelin precursor B6	GLUTELIN B6		2	glutelin.	 Seed - Physiological traits - Storage substances	Os02g0248800	LOC_Os02g15070.1				GO:0045735 - nutrient reservoir activity		
18367	_	OsEnS-35	_	endosperm-specific gene 35			2	LOC_Os02g19420.		Os02g0296400	LOC_Os02g19420.1						
18368	_	OsEnS-37	_	endosperm-specific gene 37			2	LOC_Os02g28580.		Os02g0487300	LOC_Os02g28580.1						
18369	PARP3	OsEnS-38, OsPARP3	POLY(ADP-RIBOSE) POLYMERASE 3	endosperm-specific gene 38, poly(ADP-ribose) polymerase 3, Poly ADP-ribose polymerase-3	POLY(ADP-RIBOSE) POLYMERASE 3		2	Q0E0Q3. OsPARP3 is likely to be involved in the Ku-independent alternative non-homologous end-joining pathway (A-NHEJ pathway). (Ishii et al. 2016)	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0530600	LOC_Os02g32860.1				GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0006281 - DNA repair, GO:0006471 - protein amino acid ADP-ribosylation, GO:0005634 - nucleus, GO:0009314 - response to radiation, GO:0006303 - double-strand break repair via nonhomologous end joining		
18370	_	OsEnS-39	_	endosperm-specific gene 39			2	LOC_Os02g32860.		Os02g0576400	LOC_Os02g36680.1						
18371	_	OsEnS-40, EnS-40	_	endosperm-specific gene 40			2	LOC_Os02g37480. Glycine-rich cell wall structural protein (precursor).	 Reproductive organ - panicle	Os02g0586900	LOC_Os02g37480.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
18372	_	OsEnS-42	_	endosperm-specific gene 42			2	LOC_Os02g54960.		Os02g0792500	LOC_Os02g54960.1						
18373	_	OsEnS-44, EnS-44, OsEnS44, EnS44	_	endosperm-specific gene 44			3	LOC_Os03g07226.	 Biochemical character	Os03g0168500	LOC_Os03g07226.1, LOC_Os03g07226.2				GO:0045454 - cell redox homeostasis, GO:0015035 - protein disulfide oxidoreductase activity		
18374	_	OsEnS-46	_	endosperm-specific gene 46			3	LOC_Os03g26490.		Os03g0381500	LOC_Os03g26490.1						
18375	_	OsEnS-49	_	endosperm-specific gene 49			3	LOC_Os03g42520.		Os03g0623100	LOC_Os03g42520.1						
18376	_	OsEnS-50	_	endosperm-specific gene 50			3	LOC_Os03g45210.	 Biochemical character	Os03g0654700	LOC_Os03g45210.1				GO:0047800 - cysteamine dioxygenase activity		
18377	FLOC1	OsEnS-51, OsFLOC1, OsCDP3.5, CDP3.5	FLO2-INTERACTING CUPIN DOMAIN PROTEIN 1	endosperm-specific gene 51, FLO2-interacting cupin domain protein 1, cupin domain protein 3.5	FLO2-INTERACTING CUPIN DOMAIN PROTEIN 1		3	TO:0000931: seed quality trait.	 Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Reproductive organ - Pollination, fertilization, fertility	Os03g0663800	LOC_Os03g46100.1, LOC_Os03g46100.2, LOC_Os03g46100.4, LOC_Os03g46100.5				GO:0045735 - nutrient reservoir activity, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000391 - seed size, TO:0000484 - seed shape, TO:0000639 - seed fertility	PO:0001170 - seed development stage , PO:0009010 - seed 
18378	_	OsEnS-52	_	endosperm-specific gene 52			3	LOC_Os03g48220.	 Tolerance and resistance	Os03g0687700	LOC_Os03g48220.1				GO:0030598 - rRNA N-glycosylase activity, GO:0017148 - negative regulation of translation, GO:0006952 - defense response		
18379	_	OsEnS-53	_	endosperm-specific gene 53			3	LOC_Os03g51350.		Os03g0723400	LOC_Os03g51350.1						
18380	PRO10.2	OsEnS-56, pro10.2, OsPRO10.2	10 KDA PROLAMIN 2	endosperm-specific gene 56, 10 kDa prolamin 2	10 KDA PROLAMIN 2		3		 Seed - Physiological traits - Storage substances	Os03g0766200	LOC_Os03g55734.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
18381	CDP3.1 	OsEnS-57, EnS-57, OsCDP3.1, OsCDP3.10, CDP3.10	CUPIN DOMAIN CONTAINING PROTEIN 3.1	endosperm-specific gene 57, cupin domain containing protein 3.1, Cupincin	CUPIN DOMAIN CONTAINING PROTEIN 3.1	cdp3.1, Oscdp3.10, Oscdp3.10-1, Oscdp3.10-2, Oscdp3.10-3	3	B8AL97, Q852L2. OsCDP3.10 in Peng et al. 2021. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits,  Seed - Physiological traits - Storage substances,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance	Os03g0793700	LOC_Os03g57960.1				GO:0009651 - response to salt stress, GO:0009505 - plant-type cell wall, GO:0019915 - lipid storage, GO:0009845 - seed germination, GO:0042742 - defense response to bacterium, GO:0045735 - nutrient reservoir activity, GO:0048316 - seed development	TO:0000203 - bacterial leaf streak disease resistance, TO:0000605 - hydrogen peroxide content, TO:0002673 - amino acid content, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000710 - globulin protein content, TO:0000345 - seed viability, TO:0000280 - seedling vigor, TO:0000430 - germination rate	PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage , PO:0001170 - seed development stage 
18382	_	OsEnS-58	_	endosperm-specific gene 58			3	LOC_Os03g61160. APC regulator. APC regulatory subunit.		Os03g0826900	LOC_Os03g61160.1, LOC_Os03g61160.2, LOC_Os03g61160.3, LOC_Os03g61160.4, LOC_Os03g61160.5						
18383	_	OsEnS-59	_	endosperm-specific gene 59			3	LOC_Os03g62590. putative steroleosin-B.	 Seed - Physiological traits - Dormancy,  Biochemical character	Os03g0842900	LOC_Os03g62590.1				GO:0009845 - seed germination, GO:0016491 - oxidoreductase activity, GO:0016114 - terpenoid biosynthetic process, GO:0016021 - integral to membrane, GO:0006694 - steroid biosynthetic process		PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
18384	_	OsEnS-60	_	endosperm-specific gene 60			4	LOC_Os04g12639.		Os04g0203400	LOC_Os04g12639.1						
18385	_	OsEnS-62	_	endosperm-specific gene 62			4	LOC_Os04g32070.	 Biochemical character	Os04g0390700	LOC_Os04g32070.1				GO:0016491 - oxidoreductase activity		
18386	_	OsEnS-63	_	endosperm-specific gene 63			4	LOC_Os04g32430.		Os04g0395300	LOC_Os04g32430.1						
18387	_	OsEnS-64, PCC13-62, OsPCC13-62	_	endosperm-specific gene 64, desiccation-related protein, desiccation-related protein PCC13-62			4		 Tolerance and resistance - Stress tolerance	Os04g0404400	LOC_Os04g33150.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
18388	_	OsEnS-66	_	endosperm-specific gene 66			4	LOC_Os04g35490.		Os04g0434400	LOC_Os04g35490.1						
18389	_	OsEnS-67	_	endosperm-specific gene 67			4	LOC_Os04g43160.		Os04g0510600	LOC_Os04g43160.1						
18390	_	OsEnS-68	_	endosperm-specific gene 68			4	LOC_Os04g43170.		Os04g0510900	LOC_Os04g43170.1						
18391	_	OsEnS-71	_	endosperm-specific gene 71			4	LOC_Os04g44580.		Os04g0528000	LOC_Os04g44580.1						
18392	_	OsEnS-74	_	endosperm-specific gene 74			5	LOC_Os05g12670.		Os05g0218100	LOC_Os05g12670.1						
18393	SCP27	OsEnS-75, OsSCP27, OsSCP28, SCP28	SERINE CARBOXYPEPTIDASE 27	endosperm-specific gene 75, Serine carboxypeptidase 27, Serine carboxypeptidase 28	SERINE CARBOXYPEPTIDASE 27		5	LOC_Os05g18604. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml One of the two candidate genes within the grain weight major QTL region OsqGW5.1 (Daware et al. 2016).	 Biochemical character	Os05g0268500	LOC_Os05g18604.1, LOC_Os05g18604.2, LOC_Os05g18604.3, LOC_Os05g18604.4, LOC_Os05g18604.5, LOC_Os05g18604.6				GO:0004185 - serine-type carboxypeptidase activity		PO:0009010 - seed 
18394	PRO13B.19	OsEnS-76, pro13b.19, OsPRO13B.19	13 KDA PROLAMIN B.19	endosperm-specific gene 76, 13 kDa prolamin B.19	13 KDA PROLAMIN B.19		5		 Seed - Physiological traits - Storage substances	Os05g0331366	LOC_Os05g26690.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum		PO:0009089 - endosperm 
18395	_	OsEnS-78	_	endosperm-specific gene 78			5	LOC_Os05g47820.		Os05g0551500	LOC_Os05g47820.1, LOC_Os05g47820.2						
18396	_	OsEnS-79	_	endosperm-specific gene 79			5	LOC_Os05g48416.	 Biochemical character	Os05g0557900	LOC_Os05g48416.1, LOC_Os05g48416.2				GO:0008374 - O-acyltransferase activity, GO:0006629 - lipid metabolic process		
18397	_	OsEnS-80	_	endosperm-specific gene 80			5	LOC_Os05g48610.		Os05g0559800	LOC_Os05g48610.1						
18398	RLCK192	OsEnS-81, OsRLCK192	RECEPTOR-LIKE CYTOPLASMIC KINASE 192	endosperm-specific gene 81, Receptor-like Cytoplasmic Kinase 192	RECEPTOR-LIKE CYTOPLASMIC KINASE 192		5	LOC_Os05g51400.	 Seed	Os05g0591800	LOC_Os05g51400.1				GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
18399	_	OsEnS-86, EnS-86, MEG3	_	endosperm-specific gene 86, Maternally Expressed Gene 3		meg3	6	ROS1a Target gene.	 Character as QTL - Yield and productivity,  Seed - Morphological traits	Os06g0498150	LOC_Os06g30280.1					TO:0000382 - 1000-seed weight, TO:0000304 - seed thickness	
18400	PYL/RCAR13	OsEnS-89, OsPYL/RCAR13, OsPYL13, PYL13	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 13	endosperm-specific gene 89, pyrabactin resistance-like 13, PYR1-like 13, pyrabactin resistance 1-like 13	PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 13	pyl13	6	OsPYL11, 12 or 13 in Tian et al. 2015. No name in Kim et al. 2012. thought to be nonfunctional (Tian et al. 2015). GO:0038023: signaling receptor activity. GO:0080163: regulation of protein serine/threonine phosphatase activity.		Os06g0526466	LOC_Os06g33490.1				GO:0009738 - abscisic acid mediated signaling, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0005634 - nucleus, GO:0010427 - abscisic acid binding, GO:0005737 - cytoplasm		
18401	_	OsEnS-91	_	endosperm-specific gene 91			7	LOC_Os07g02920.		Os07g0120500	LOC_Os07g02920.1						
18402	_	OsEnS-95	_	endosperm-specific gene 95			7	LOC_Os07g11310.		Os07g0213600	LOC_Os07g11310.1						
18403	_	OsEnS-96	_	endosperm-specific gene 96			7	LOC_Os07g11330.	 Biochemical character	Os07g0213800	LOC_Os07g11330.1				GO:0016068 - type I hypersensitivity, GO:0005615 - extracellular space, GO:0004867 - serine-type endopeptidase inhibitor activity		
18404	_	OsEnS-101	_	endosperm-specific gene 101			7	LOC_Os07g12080.	 Biochemical character	Os07g0222000	LOC_Os07g12080.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
18405	_	OsEnS-102	_	endosperm-specific gene 102			7	LOC_Os07g13634.	 Biochemical character	Os07g0240600	LOC_Os07g13634.1				GO:0016758 - transferase activity, transferring hexosyl groups		
18406	HIPP32	OsEnS-104, OsHMP35, HMP35, OsHIPP32, OsaHIP32, HIP32, HIP7_Ath	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 32	endosperm-specific gene 104, Heavy metal-associated protein 35, heavy-metal-associated isoprenylated plant protein 32	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 32		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0298900	LOC_Os07g20340.1				GO:0030001 - metal ion transport, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0046872 - metal ion binding	TO:0006001 - salt tolerance	
18407	_	OsEnS-105	_	endosperm-specific gene 105			7	LOC_Os07g23960.	 Biochemical character	Os07g0421600	LOC_Os07g23960.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
18408	_	OsEnS-106	_	endosperm-specific gene 106			7	LOC_Os07g29760.	 Biochemical character	Os07g0480900	LOC_Os07g29760.1				GO:0008234 - cysteine-type peptidase activity		
18409	DEFL13	OsEnS-108, EnS-108, DEFL, OsDEFL13	DEFENSIN-LIKE 13	endosperm-specific gene 108, DEFL family gene, Defensin-like 13	DEFENSIN-LIKE 13		7			Os07g0604100	LOC_Os07g41290.1						PO:0009010 - seed , PO:0001170 - seed development stage 
18410	FLZ23	OsEnS-110, EnS-110, OsFLZ23	FCS-LIKE ZINC FINGER PROTEIN 23	endosperm-specific gene 110	FCS-LIKE ZINC FINGER PROTEIN 23		7		 Tolerance and resistance - Stress tolerance	Os07g0615500	LOC_Os07g42390.1, LOC_Os07g42390.2				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	
18411	_	OsEnS-112	_	endosperm-specific gene 112			7	LOC_Os07g44020.		Os07g0634000	LOC_Os07g44020.1						
18412	_	OsEnS-114	_	endosperm-specific gene 114			7	LOC_Os07g47840.		Os07g0675200	LOC_Os07g47840.1				GO:0006457 - protein folding, GO:0009644 - response to high light intensity, GO:0016114 - terpenoid biosynthetic process, GO:0042542 - response to hydrogen peroxide, GO:0045893 - positive regulation of transcription, DNA-dependent		
18413	_	OsEnS-115	_	endosperm-specific gene 115			8	LOC_Os08g03410.	 Seed - Physiological traits - Storage substances	Os08g0127900	LOC_Os08g03410.1				GO:0045735 - nutrient reservoir activity		
18414	_	OsEnS-119	_	endosperm-specific gene 119			8	LOC_Os08g18974.		Os08g0286500	LOC_Os08g18974.1, LOC_Os08g18974.2, LOC_Os08g18974.3						
18415	_	OsEnS-120	_	endosperm-specific gene 120			8	LOC_Os08g23170.		Os08g0320900	LOC_Os08g23170.1						
18416	_	OsEnS-122	_	endosperm-specific gene 122			8			Os08g0467500	LOC_Os08g36440.1, LOC_Os08g36440.2				GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
18417	_	OsEnS-125	_	endosperm-specific gene 125			9	LOC_Os09g08280.		Os09g0256700	LOC_Os09g08280.1						
18418	_	OsEnS-126	_	endosperm-specific gene 126			9	LOC_Os09g20340.		Os09g0368900	LOC_Os09g20340.1						
18419	_	OsEnS-127	_	endosperm-specific gene 127			9	LOC_Os09g20400.		Os09g0369500	LOC_Os09g20400.1						
18420	ALAAT5	OsEnS-128, OsAlaAT5, AlaAT5	ALANINE AMINOTRANSFERASE 5	endosperm-specific gene 128, Alanine transaminase 5, alanine-aminotransferase5	ALANINE AMINOTRANSFERASE 5		9	LOC_Os09g26380.	 Biochemical character	Os09g0433900	LOC_Os09g26380.1				GO:0009058 - biosynthetic process, GO:0030170 - pyridoxal phosphate binding		
18421	PFK9	OsEnS-130, OsPFK09, PFK09, OsPFK9	PHOSPHOFRUCTOKINASE 9	endosperm-specific gene 130, phosphofructokinase 9	PHOSPHOFRUCTOKINASE 9		9	group B phosphofructokinase (PKF_B). 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0479800	LOC_Os09g30240.1				GO:0005524 - ATP binding, GO:0005829 - cytosol, GO:0034059 - response to anoxia, GO:0003872 - 6-phosphofructokinase activity, GO:0006002 - fructose 6-phosphate metabolic process, GO:0006096 - glycolysis	TO:0000482 - chemical stress sensitivity	
18422	CSLA12	OsEnS-131, OsCslA12, OsMnS, MnS	CELLULOSE SYNTHASE LIKE A12	endosperm-specific gene 131, cellulose synthase like A12, mannan synthase	CELLULOSE SYNTHASE LIKE A12		9	GO:0071555: cell wall organization.	 Biochemical character,  Character as QTL - Grain quality	Os09g0572500	LOC_Os09g39920.1				GO:0005794 - Golgi apparatus, GO:0000139 - Golgi membrane, GO:0051753 - mannan synthase activity	TO:0000162 - seed quality	
18423	HAP5L	OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11	HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	endosperm-specific gene 133, Nuclear Factor Y subunit C12, NUCLEAR FACTOR-Y subunit C11, NUCLEAR FACTOR-Y subunit NF-YC11, NF-YC transcription factor 11, NF-YC subunit 11, NF-YC family 11	HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX 	osnf-yc11, nf-yc12, nf-yc12-1, nf-yc12-2, crnf-yc12, crnf-yc12-7, crnf-yc12-11, crnf-yc12-14	10	OsNF-YC11 in Yang et al. 2017, Li et al. 2018. NF-YC12 in Bello   et al. 2019, Wang et al. 2024.GO:2000034: regulation of seed maturation. GO:2000014: regulation of endosperm development. TO:0000975: grain width.	 Other,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os10g0191900	LOC_Os10g11580.1				GO:0010581 - regulation of starch biosynthetic process, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0009660 - amyloplast organization, GO:0019252 - starch biosynthetic process, GO:0009960 - endosperm development, GO:0048316 - seed development, GO:0016602 - CCAAT-binding factor complex	TO:0000615 - abscisic acid sensitivity, TO:0000734 - grain length, TO:0000162 - seed quality, TO:0000653 - seed development trait, TO:0000604 - fat and essential oil content, TO:0000266 - chalky endosperm, TO:0000592 - 1000-dehulled grain weight, TO:0002656 - starch grain shape, TO:0002655 - starch grain size, TO:0000487 - endosperm color, TO:0000590 - grain weight, TO:0000696 - starch content, TO:0000598 - protein content, TO:0000196 - amylose content	PO:0009089 - endosperm , PO:0006220 - central endosperm , PO:0001170 - seed development stage , PO:0005360 - aleurone layer , PO:0007632 - seed maturation stage 
18424	_	OsEnS-134	_	endosperm-specific gene 134			10	LOC_Os10g12400.		Os10g0198900	LOC_Os10g12390.1, LOC_Os10g12400.1						
18426	_	OsEnS-138	_	endosperm-specific gene 138			10	LOC_Os10g29549.			LOC_Os10g29549						
18427	_	OsEnS-140	_	endosperm-specific gene 140			10	LOC_Os10g41160.		Os10g0561000	LOC_Os10g41160.1						
18428	_	OsEnS-142, ENS142	_	endosperm-specific gene 142, ZmEBE-like			11	homologous to ZmEBE 1 (embryo sac/basal endosperm transfer layer/embryo surrounding region).		Os11g0284600	LOC_Os11g18140.1						PO:0009010 - seed , PO:0001170 - seed development stage 
18429	_	OsEnS-146, EnS-146, OsEnS146, EnS146	_	endosperm-specific gene 146			11	LOC_Os11g37270.	 Tolerance and resistance - Disease resistance	Os11g0582400	LOC_Os11g37270.1				GO:0050832 - defense response to fungus		
18430	GNK2RLK9	OsEnS-147, Gnk2RLK-9, OsGnk2RLK-9	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 9	endosperm-specific gene 147, GnK2 domain containing receptor-like kinase-9	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 9		11		 Biochemical character	Os11g0601500	LOC_Os11g38850.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009009 - plant embryo 
18431	_	OsEnS-148	_	endosperm-specific gene 148			12	LOC_Os12g08700.		Os12g0187800	LOC_Os12g08700.1						
18432	_	OsEnS-149	_	endosperm-specific gene 149			12	LOC_Os12g24084.		Os12g0428700	LOC_Os12g24084.1						
18433	_	OsEnS-150, OsDR, DR	_	endosperm-specific gene 150, Dehydrogenase/reductase			12	LOC_Os12g27830.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0464400	LOC_Os12g27830.1				GO:0009414 - response to water deprivation, GO:0016491 - oxidoreductase activity	TO:0000276 - drought tolerance	
18434	_	OsEnS-151	_	endosperm-specific gene 151			12	LOC_Os12g42670.		Os12g0621600	LOC_Os12g42670.1						
18436	YLC1	OsV5A, V5A	YOUNG LEAF CHLOROSIS 1	Young Leaf Chlorosis 1, VIRESCENT 5A		ylc1, ylc1-1, ylc1-2, ylc1-3, ylc1-4, osv5a	9	LOC_Os09g21250. TO:0006060: leaf chlorosis. GO:0044183: protein binding involved in protein folding.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Coloration - Others	Os09g0380200	LOC_Os09g21250.1				GO:0009409 - response to cold, GO:0009941 - chloroplast envelope, GO:0015979 - photosynthesis, GO:0015995 - chlorophyll biosynthetic process, GO:0048366 - leaf development, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0042651 - thylakoid membrane	TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0002701 - lutein content, TO:0002715 - chloroplast development trait, TO:0000655 - leaf development trait, TO:0000298 - chlorophyll ratio, TO:0000295 - chlorophyll-b content, TO:0000316 - photosynthetic ability, TO:0000303 - cold tolerance	
18437	_		_	Young Leaf Chlorosis 1-like gene, YCL1-like gene			3	LOC_Os03g15033.		Os03g0255200	LOC_Os03g15033.1				GO:0009658 - chloroplast organization, GO:0006364 - rRNA processing, GO:0006399 - tRNA metabolic process, GO:0016226 - iron-sulfur cluster assembly, GO:0009793 - embryonic development ending in seed dormancy, GO:0009706 - chloroplast inner membrane, GO:0009073 - aromatic amino acid family biosynthetic process		
18438	V5B	OsV5B	VIRESCENT 5B	Young Leaf Chlorosis 1-like gene, YCL1-like gene			8	LOC_Os08g32130. GO:0044183: protein binding involved in protein folding.		Os08g0416900	LOC_Os08g32130.1, LOC_Os08g32130.2				GO:0009941 - chloroplast envelope, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane, GO:0042651 - thylakoid membrane		
18439	_	OSK4	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 4, Oryza sativa SKP1-like gene 4			9	LOC_Os09g10200.		Os09g0273800	LOC_Os09g10200.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18440	_	OSK7	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 7, Oryza sativa SKP1-like gene 7			9	LOC_Os09g10300.		Os09g0275200	LOC_Os09g10300.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18441	_	OSK8	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 8, Oryza sativa SKP1-like gene 8			9										
18442	_	OSK9	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 9, Oryza sativa SKP1-like gene 9			7	LOC_Os07g05150.		Os07g0144800	LOC_Os07g05150.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18443	_	OSK11	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 11, Oryza sativa SKP1-like gene 11			6	LOC_Os06g02350.			LOC_Os06g02350				GO:0006511 - ubiquitin-dependent protein catabolic process		
18444	_	OSK12	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 12, Oryza sativa SKP1-like gene 12			9	LOC_Os09g10270.		Os09g0274800	LOC_Os09g10270.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18445	_	OSK13	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 13, Oryza sativa SKP1-like gene 13			9	LOC_Os09g10230.		Os09g0274400	LOC_Os09g10230.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18446	_	OSK14	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 14, Oryza sativa SKP1-like gene 14			9	LOC_Os09g10040 (not found in MSU Rice Genome Annotation Project Release 7 data).									
18447	_	OSK16	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 16, Oryza sativa SKP1-like gene 16			7	LOC_Os07g05160.		Os07g0144900	LOC_Os07g05160.1						
18448	_	OSK17	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 17, Oryza sativa SKP1-like gene 17			7		 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os07g0624900	LOC_Os07g43180.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016301 - kinase activity, GO:0051321 - meiotic cell cycle	TO:0000729 - meiotic cell cycle trait, TO:0000355 - heterosis	
18449	_	OSK18	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 18, Oryza sativa SKP1-like gene 18			7	LOC_Os07g43200.		Os07g0625100	LOC_Os07g43200.1						
18450	_	OSK22	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 22, Oryza sativa SKP1-like gene 22			7	LOC_Os07g43250.		Os07g0625500	LOC_Os07g43250.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016301 - kinase activity		
18451	_	OSK23	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 23, Oryza sativa SKP1-like gene 23			7	LOC_Os07g43270.			LOC_Os07g43270				GO:0006511 - ubiquitin-dependent protein catabolic process		
18452	_	OSK25	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 25, Oryza sativa SKP1-like gene 25			8	LOC_Os08g28800.		Os08g0375500	LOC_Os08g28800.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18453	_	OSK26	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 26, Oryza sativa SKP1-like gene 26			7	LOC_Os07g43220.		Os07g0625200	LOC_Os07g43220.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18454	_	OSK27	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 27, Oryza sativa SKP1-like gene 27			7	LOC_Os07g43230.		Os07g0625300	LOC_Os07g43230.1				GO:0006511 - ubiquitin-dependent protein catabolic process		
18455	_	OSK29	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 29, Oryza sativa SKP1-like gene 29			8	LOC_Os08g28780.			LOC_Os08g28780				GO:0006511 - ubiquitin-dependent protein catabolic process		
18456	_	OSK30	_	S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 30, Oryza sativa SKP1-like gene 30			9	LOC_Os09g10020.			LOC_Os09g10020				GO:0006511 - ubiquitin-dependent protein catabolic process		
18457	DSM2	OsDSM2, OsBCH1, BCH1, OsHYD3, HYD3	DROUGHT-HYPERSENSITIVE MUTANT 2	beta-Carotene Hydroxylase 1, carotene beta-ring hydroxylase 3, drought-hypersensitive mutant 2	HYDROXYLASE 3	dsm2, dsm2-1, dsm2-2	3	TO:0020078: zeaxanthin content. GO:901827: zeaxanthin biosynthetic process. GO:0090332: stomatal closure.  a gene of interest in qPL3-3 (a QTL for panicle length) (Bai et al. 2021).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0125100	LOC_Os03g03370.1, LOC_Os03g03370.2				GO:0010196 - nonphotochemical quenching, GO:0009688 - abscisic acid biosynthetic process, GO:0016021 - integral to membrane, GO:0016123 - xanthophyll biosynthetic process, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0009411 - response to UV, GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding	TO:0002667 - abscisic acid content, TO:0002657 - oxidative stress, TO:0000316 - photosynthetic ability, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity, TO:0000301 - xanthophyll content	
18458	HYD2	OsBCH3, BCH3, OsHYD2, OsBCH2, BCH2	BETA-CAROTENE HYDROXYLASE  2	beta-Carotene Hydroxylase 3, carotene beta-ring hydroxylase 2, beta-carotene hydroxylase  2	BETA-CAROTENE HYDROXYLASE  2		10	OsBCH2 in Jin et al. 2021.	 Tolerance and resistance - Stress tolerance,  Coloration - Others,  Biochemical character	Os10g0533500	LOC_Os10g38940.1				GO:0006633 - fatty acid biosynthetic process, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016117 - carotenoid biosynthetic process, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity	
18459	_	OsPOT, POT, OsIROPT1, IROPT1	_	Proton-dependent oligopeptide transporter family protein			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.	 Biochemical character	Os01g0871600	LOC_Os01g65110.1				GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0015333 - peptide:hydrogen symporter activity, GO:0005215 - transporter activity		
18460	_	OsPTR3, PTR3, PTR3-A	_	Peptide transporter PTR3-A			12	peptide transporter (PTR) gene family.	 Biochemical character	Os12g0231000	LOC_Os12g12934.1				GO:0005215 - transporter activity, GO:0016020 - membrane		
18461	PDF1.2	OsPDF1.2, DEFL6, OsDEFL6, OsDf-06, Df-06, DEF6, OsDEF6	PLANT DEFENSIN 1.2	defensin-like 6, defensin 6	PLANT DEFENSIN 1.2		2		 Tolerance and resistance	Os02g0212100	LOC_Os02g12060.1				GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response	TO:0000172 - jasmonic acid sensitivity	
18462	_	OsVSP2	_	VEGETATIVE STORAGE PROTEIN 2			5		 Biochemical character	Os05g0190500	LOC_Os05g10210.1				GO:0009753 - response to jasmonic acid stimulus, GO:0003993 - acid phosphatase activity	TO:0000172 - jasmonic acid sensitivity	
18463	S3H	OsS3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1, OsSAH3, SAH3, OsS3H/OsSAH3, OsS5H1, S5H1	SALICYLIC ACID 3 HYDROXYLASE	2-oxoglutarate-dependent dioxygenase 1, SA hydroxylase 3, salicylic acid hydroxylase 3	SALICYLIC ACID 3 HYDROXYLASE	sah3	4	a Downy Mildew Resistance 6-like (DMR6-like) gene. GO:1900425: negative regulation of defense response to bacterium. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0581100	LOC_Os04g49210.1				GO:0010150 - leaf senescence, GO:0009751 - response to salicylic acid stimulus, GO:0050832 - defense response to fungus, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0046244 - salicylic acid catabolic process	TO:0000249 - leaf senescence, TO:0000203 - bacterial leaf streak disease resistance, TO:0000476 - growth hormone content, TO:0000074 - blast disease, TO:0002668 - jasmonic acid content, TO:0000356 - brown spot disease resistance, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage 
18465	HIPP52	OsHMP46, HMP46, OsHIPP52, OsaHIP52, HIP52	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 52	Heavy-metal-associated domain-containing protein, Heavy metal-associated protein 46, heavy-metal-associated isoprenylated plant protein 52	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 52		12	one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.	 Biochemical character	Os12g0144600	LOC_Os12g05040.1, LOC_Os12g05040.3, LOC_Os12g05040.5, LOC_Os12g05040.6				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding, GO:0009507 - chloroplast		
18466	_	CBP-LIKE	_	Calmodulin binding protein, CALMODULIN BINDING PROTEIN-LIKE			1	one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.	 Tolerance and resistance - Stress tolerance	Os01g0134700	LOC_Os01g04280.1				GO:0005516 - calmodulin binding, GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
18467	_		_	Proline-rich family protein			1	LOC_Os01g07520. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os01g0169900	LOC_Os01g07520.1						
18468	_	CAMK	_				6	LOC_Os06g50030. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os06g0714200	LOC_Os06g50030.1				GO:0005524 - ATP binding		
18469	_		_	Receptor-like protein kinase 2			10	LOC_Os10g03420. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.			LOC_Os10g03420				GO:0016301 - kinase activity		
18470	_		_	GTPase-activating protein			3	LOC_Os03g63710. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os03g0854100	LOC_Os03g63710.1, LOC_Os03g63710.2				GO:0032312 - regulation of ARF GTPase activity, GO:0008060 - ARF GTPase activator activity		
18471	_		_	MYB family transcription factor			1	LOC_Os01g08160. one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.		Os01g0176700	LOC_Os01g08160.1				GO:0003700 - transcription factor activity, GO:0003682 - chromatin binding		
18472	DIR16	OsDIR16, OsjDIR16	DIRIGENT 16	Dirigent, Dirigent 16, DIR domain protein 16	DIRIGENT 16		7	one of the Putative interacting partners of OsACA6 identified by yeast two hybrid screening.			LOC_Os07g01680.1						
18473	_	OsENOD93, ENOD93	_	early nodulin 93 gene			6	one of six ENOD93 genes located in the same chromosomal region.		Os06g0142400	LOC_Os06g05020.2, LOC_Os06g05020.1				GO:0005739 - mitochondrion		
18474	_	OsENOD93	_	early nodulin 93 gene			6	LOC_Os06g04950. one of six ENOD93 genes located in the same chromosomal region.		Os06g0141700	LOC_Os06g04950.1				GO:0005739 - mitochondrion		
18475	_	OsENOD93	_	early nodulin 93 gene			6	LOC_Os06g05000. one of six ENOD93 genes located in the same chromosomal region.		Os06g0142300	LOC_Os06g05000.1				GO:0005739 - mitochondrion		
18476	_	OsENOD93	_	early nodulin 93 gene			6	LOC_Os06g04940. one of six ENOD93 genes located in the same chromosomal region.		Os06g0141600	LOC_Os06g04940.1, LOC_Os06g04940.2				GO:0009507 - chloroplast		
18478	_	OsGT43B	_	glycosyltransferase family GT43 member B			3	LOC_Os03g17850. Q10N05. GO:0071555: cell wall organization.	 Biochemical character	Os03g0287800	LOC_Os03g17850.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity		
18479	_	OsGT43D	_	glycosyltransferase family GT43 member D			1	LOC_Os01g06450. Q5ZCC5. GO:0071555: cell wall organization.	 Biochemical character	Os01g0157700	LOC_Os01g06450.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0015018 - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity		
18480	GW6A	OsglHAT1, glHAT1, GW6a, OsGW6a, OsGNAT1, GNAT1	GRAIN WEIGHT 6A	GCN5-related N-acetyltransferase-like histone acetyltransferase 1, GNAT-like HAT1, Grain weight on chromosome 6-a	GCN5-RELATED N-ACETYLTRANSFERASE-LIKE HISTONE ACETYLTRANSFERASE 1	OsglHAT1N, OsglHAT1K, osgnat1	6	LC003015-LC003018. LC593242. GW6 (grain-weight quantitative trait locus on chromosome 6) consists of two loci: GW6a and GW6b that impacts grain weight equally. an ortholog for barley MND1. 	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os06g0650300	LOC_Os06g44100.1				GO:0010485 - H4 histone acetyltransferase activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043966 - histone H3 acetylation, GO:0043967 - histone H4 acetylation, GO:0004402 - histone acetyltransferase activity, GO:0008284 - positive regulation of cell proliferation, GO:0008080 - N-acetyltransferase activity	TO:0000735 - plastochron, TO:0000402 - grain width, TO:0000734 - grain length, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0002661 - seed maturation	PO:0000017 - vascular leaf primordium 
18481	_	RAB18	_	stress-related RAB18 gene				JF495696. a homolog of the Os03g0146000 gene.	 Tolerance and resistance - Stress tolerance						GO:0005525 - GTP binding, GO:0009651 - response to salt stress, GO:0007264 - small GTPase mediated signal transduction	TO:0006001 - salt tolerance	
18482	_	OsPR1b, PR1b	_	pathogenesis-related gene 1b			7		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0125000					GO:0005576 - extracellular region, GO:0010332 - response to gamma radiation		
18483	AAI1	OsAAI1	ALPHA-AMYLASE INHIBITOR 1	Alpha-Amylase Inhibitor 1	ALPHA-AMYLASE INHIBITOR 1	osaai1, osaai1-1, osaai1-2, osaai1-3	4	a protease inhibitor/seed storage/LTP family protein precursor. GO:2000280: regulation of root development. TO:0000975: grain width. GO:2000377: regulation of reactive oxygen species metabolic process.	 Character as QTL - Yield and productivity,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity	Os04g0644400	LOC_Os04g55159.1				GO:0048364 - root development, GO:0010332 - response to gamma radiation, GO:0009733 - response to auxin stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009555 - pollen development, GO:0009738 - abscisic acid mediated signaling, GO:0006979 - response to oxidative stress, GO:0009269 - response to desiccation, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0030104 - water homeostasis	TO:0000370 - leaf width, TO:0001016 - relative chlorophyll content, TO:0000516 - relative root length, TO:0000357 - growth and development trait, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000396 - grain yield, TO:0000397 - grain size, TO:0001013 - lateral root number, TO:0000227 - root length, TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000656 - root development trait, TO:0000371 - yield trait, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent, TO:0000734 - grain length, TO:0000421 - pollen fertility, TO:0002667 - abscisic acid content, TO:0001006 - adventitious root number, TO:0000578 - root fresh weight, TO:0000136 - relative water content, TO:0000135 - leaf length	PO:0007520 - root development stage , PO:0001007 - pollen development stage 
18484	_	STV11, OsSOT1	_	sulfotransferase 1, RSV (Rice stripe virus) resistance quantitative trait locus on chromosome 11		STV11-R, STV11-S	11	LOC_Os11g30910.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0505300	LOC_Os11g30910.1				GO:0008146 - sulfotransferase activity, GO:0009696 - salicylic acid metabolic process, GO:0051607 - defense response to virus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000148 - viral disease resistance	
18485	AAP10D	OsAAP10D, OsAAP6, AAP6, qPC1	AMINO ACID PERMEASE 10D	amino acid permease 10D, amino acid permease 6, amino acid/auxin permease 6, quantitative trait locus (QTL) for GPC (grain protein content) on chromosome 1	AMINO ACID PERMEASE 10D		1	OsAAP6 in Zhao et al. 2012, Zheng et al. 2024, Peng et al. 2024. GO:0003333: amino acid transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality	Os01g0878700	LOC_Os01g65670.1				GO:0009651 - response to salt stress, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000162 - seed quality, TO:0000598 - protein content	
18486	AAP6	OsAAP6, OsAAP1, AAP1	AMINO ACID PERMEASE 6	amino acid permease 6, amino acid permease 1, amino acid/auxin permease 1	AMINO ACID PERMEASE 6	Osaap1	7	OsAAP1 in Zhao et al. 2012 and Taylor et al. 2015, Wang et al. 2019, Ji et al. 2020, Ren et al. 2021. GO:0003333: amino acid transmembrane transport. PO:0030123: panicle inflorescence. GO:0071705: nitrogen compound transport. GO:1902347: response to strigolactone. GO:1901698: response to nitrogen compound. TO:0020093: nitrogen content. 	 Biochemical character,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os07g0134000	LOC_Os07g04180.2, LOC_Os07g04180.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0006865 - amino acid transport, GO:0005886 - plasma membrane, GO:0015804 - neutral amino acid transport, GO:0031965 - nuclear membrane, GO:0006807 - nitrogen compound metabolic process, GO:0009734 - auxin mediated signaling pathway, GO:0009736 - cytokinin mediated signaling, GO:0045927 - positive regulation of growth, GO:0009737 - response to abscisic acid stimulus	TO:0000449 - grain yield per plant, TO:0000011 - nitrogen sensitivity, TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000615 - abscisic acid sensitivity, TO:0006002 - proline content, TO:0000457 - total biomass yield, TO:0002673 - amino acid content	PO:0004709 - axillary bud , PO:0000025 - root tip , PO:0005708 - cortex , PO:0009005 - root , PO:0009047 - stem , PO:0009015 - portion of vascular tissue , PO:0000074 - parenchyma cell , PO:0025034 - leaf , PO:0020121 - lateral root , PO:0020104 - leaf sheath , PO:0005020 - vascular bundle , PO:0006016 - leaf epidermis 
18487	AAP12C	OsAAP12C, OsAAP2, AAP2	AMINO ACID PERMEASE 12C	amino acid permease 12C, amino acid permease 2, amino acid/auxin permease 2	AMINO ACID PERMEASE 12C		6	OsAAP2 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os06g0228600	LOC_Os06g12330.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
18488	AAP12A	OsAAP12A, OsAAP3, AAP3	AMINO ACID PERMEASE 12A	amino acid permease 12A, amino acid permease 3, amino acid/auxin permease 3	AMINO ACID PERMEASE 12A		6	OsAAP3 in Zhao et al. 2012, Taylor et al. 2015, Lu et al. 2018, Wei et al. 2021. GO:0003333: amino acid transmembrane transport. GO:1904821: chloroplast disassembly.	 Biochemical character,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic,  Vegetative organ - Root	Os06g0556000	LOC_Os06g36180.1				GO:0015809 - arginine transport, GO:0016021 - integral to membrane, GO:0010109 - regulation of photosynthesis, GO:0010941 - regulation of cell death, GO:0005886 - plasma membrane, GO:0010150 - leaf senescence, GO:0015171 - amino acid transmembrane transporter activity	TO:0000396 - grain yield, TO:0000084 - root number, TO:0000207 - plant height, TO:0000227 - root length, TO:0000152 - panicle number, TO:0000329 - tillering ability, TO:0002673 - amino acid content, TO:0000346 - tiller number, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000063 - mimic response	PO:0001054 - 4 leaf senescence stage 
18489	AAP10B	OsAAP10B, OsAAP4, AAP4, OsAAP4a, OsAAP4b, OsAAP4c	AMINO ACID PERMEASE 10B	amino acid permease 10B, amino acid permease 4, amino acid/auxin permease 4	AMINO ACID PERMEASE 10B		12	OsAAP4 in Zhao et al. 2012, Fang et al. 2021. GO:0003333: amino acid transmembrane transport. GO:0071705: nitrogen compound transport. TO:0000789: bud morphology trait. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Biochemical character	Os12g0194900	LOC_Os12g09300.3, LOC_Os12g09300.2, LOC_Os12g09300.1				GO:0009736 - cytokinin mediated signaling, GO:0016021 - integral to membrane, GO:0009734 - auxin mediated signaling pathway, GO:0006807 - nitrogen compound metabolic process, GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0015804 - neutral amino acid transport	TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0000329 - tillering ability, TO:0006002 - proline content, TO:0000442 - plant fresh weight, TO:0000571 - shoot fresh weight, TO:0000346 - tiller number, TO:0002673 - amino acid content, TO:0000457 - total biomass yield	PO:0000258 - root cortex , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0000025 - root tip , PO:0005352 - xylem , PO:0005417 - phloem , PO:0009047 - stem , PO:0009005 - root , PO:0025034 - leaf , PO:0020121 - lateral root , PO:0000055 - bud 
18490	AAP10C	OsAAP10C, OsAAP5, AAP5	AMINO ACID PERMEASE 10C	amino acid permease 10C, amino acid permease 5, amino acid/auxin permease 5	AMINO ACID PERMEASE 10C		1	OsAAP5 in Zhao et al. 2012, Wang et al. 2019. GO:0003333: amino acid transmembrane transport.	 Biochemical character,  Character as QTL - Yield and productivity	Os01g0878400	LOC_Os01g65660.2, LOC_Os01g65660.1				GO:0032328 - alanine transport, GO:0015809 - arginine transport, GO:0015819 - lysine transport, GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0009736 - cytokinin mediated signaling, GO:0015829 - valine transport, GO:0016021 - integral to membrane	TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0002673 - amino acid content, TO:0002660 - cytokinin content	PO:0009015 - portion of vascular tissue 
18491	AAP11F	OsAAP11F, OsAAP7, AAP7, FCO7	AMINO ACID PERMEASE 11F	amino acid permease 11F, amino acid permease 7, amino acid/auxin permeate 7, Functioning in Cesium Over-transport 7	AMINO ACID PERMEASE 11F		5	OsAAP7 in Zhao et al. 2012 and Taylor et al. 2015, Jin et al. 2024. GO:0003333: amino acid transmembrane transport. GO:1903826: L-arginine transmembrane transport. TO:0000794: axillary bud prominence. TO:0000791: axillary bud size. GO:0090506: axillary shoot meristem initiation.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character	Os05g0424000	LOC_Os05g34980.1				GO:0005783 - endoplasmic reticulum, GO:0030001 - metal ion transport, GO:0009736 - cytokinin mediated signaling, GO:0009734 - auxin mediated signaling pathway, GO:0043200 - response to amino acid stimulus, GO:0015820 - leucine transport, GO:0015819 - lysine transport, GO:0015823 - phenylalanine transport, GO:0005886 - plasma membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0005634 - nucleus	TO:0000329 - tillering ability, TO:0000396 - grain yield, TO:0002673 - amino acid content, TO:0000346 - tiller number	PO:0000034 - vascular system , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0005421 - parenchyma , PO:0020121 - lateral root 
18492	AAP11E	OsAAP11E, OsAAP8, AAP8	AMINO ACID PERMEASE 11E	amino acid permease 11E, amino acid permease 8, amino acid/auxin permease 8	AMINO ACID PERMEASE 11E		1	OsAAP8 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os01g0882800	LOC_Os01g66010.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
18493	AAP3	OsAAP3, OsAAP9, AAP9	AMINO ACID PERMEASE 3	amino acid permease 3, amino acid permease 9, amino acid/auxin permease 9	AMINO ACID PERMEASE 3		2	OsAAP9 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os02g0102200	LOC_Os02g01210.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0015171 - amino acid transmembrane transporter activity		
18494	AAP7C	OsAAP7C, OsAAP10, AAP10	AMINO ACID PERMEASE 7C	amino acid permease 7C, amino acid permease 10, amino acid/auxin permease 10	AMINO ACID PERMEASE 7C		2	OsAAP10 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os02g0722400	LOC_Os02g49060.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane		
18495	AAP11C	OsAAP11C, OsAAP11, AAP11	AMINO ACID PERMEASE 11C	amino acid permease 11C, amino acid permease 11, amino acid/auxin permease 11	AMINO ACID PERMEASE 11C	osaap11	11	OsAAP11 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport. TO:0001069: cooking quality trait.	 Biochemical character,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances	Os11g0195600	LOC_Os11g09020.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009960 - endosperm development, GO:0015171 - amino acid transmembrane transporter activity	TO:0000598 - protein content, TO:0002673 - amino acid content, TO:0000409 - peak viscosity, TO:0000696 - starch content, TO:0000196 - amylose content, TO:0000162 - seed quality	PO:0009010 - seed , PO:0009089 - endosperm , PO:0007633 - endosperm development stage 
18496	AAP11D	OsAAP11D, OsAAP12, AAP12	AMINO ACID PERMEASE 11D	amino acid permease 11D, amino acid permease 12, amino acid/auxin permease 12	AMINO ACID PERMEASE 11D		12	OsAAP12 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os12g0195100	LOC_Os12g09320.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
18497	AAP7A	OsAAP7A, OsAAP13, AAP13	AMINO ACID PERMEASE 7A	amino acid permease 7A, amino acid permease 13, amino acid/auxin permease 13	AMINO ACID PERMEASE 7A		4	OsAAP13 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os04g0470700	LOC_Os04g39489.2, LOC_Os04g39489.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane		
18498	AAP7B	OsAAP7B, OsAAP14, AAP14, OsAAP14a, OsAAP14b, OsMBTB9, MBTB9	AMINO ACID PERMEASE 7B	amino acid permease 7B, amino acid permease 14, amino acid/auxin permease 14, M BTB-type E3 ubiquitin ligase 9	AMINO ACID PERMEASE 7B		4	OsAAP14 in Zhao et al. 2012, Yang et al. 2022. GO:0003333: amino acid transmembrane transport. TO:0000791: axillary bud size. TO:0000794: axillary bud prominence. GO:0071705: nitrogen compound transport. PO:0030123: panicle inflorescence.	 Biochemical character	Os04g0659800	LOC_Os04g56470.2, LOC_Os04g56470.1				GO:0009725 - response to hormone stimulus, GO:0006807 - nitrogen compound metabolic process, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0043200 - response to amino acid stimulus		PO:0000258 - root cortex , PO:0000025 - root tip , PO:0020121 - lateral root , PO:0009047 - stem , PO:0009005 - root , PO:0009049 - inflorescence , PO:0005421 - parenchyma , PO:0003011 - root vascular system , PO:0008039 - stem base 
18499	AAP11B	OsAAP11B, OsAAP15, AAP15	AMINO ACID PERMEASE 11B	amino acid permease 11B, amino acid permease 15, amino acid/auxin permease 15	AMINO ACID PERMEASE 11B		12	OsAAP15 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os12g0181600	LOC_Os12g08130.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
18500	AAP11A	OsAAP11A, OsAAP16, AAP16	AMINO ACID PERMEASE 11A	amino acid permease 11A, amino acid permease 16, amino acid/auxin permease 16	AMINO ACID PERMEASE 11A		12	OsAAP16 in Zhao et al. 2012 and Taylor et al. 2015.GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os12g0181500	LOC_Os12g08090.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane		
18501	AAP10A	OsAAP10A, OsAAP17, AAP17	AMINO ACID PERMEASE 10A	amino acid permease 10A, amino acid permease 17, amino acid/auxin permease 17	AMINO ACID PERMEASE 10A		6	OsAAP17 in Zhao et al. 2012, Wang et al. 2019. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os06g0228800	LOC_Os06g12350.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
18502	AAP12B	OsAAP12B, OsAAP18, AAP18	AMINO ACID PERMEASE 12B	amino acid permease 12B, amino acid permease 18, amino acid/auxin permease 18	AMINO ACID PERMEASE 12B		6	OsAAP18 in Zhao et al. 2012.	 Biochemical character	Os06g0556200	LOC_Os06g36210.1				GO:0016021 - integral to membrane		
18503	AAP11G	OsAAP11G, OsAAP19, AAP19	AMINO ACID PERMEASE 11G	amino acid permease 11G, amino acid permease 19, amino acid/auxin permease 19	AMINO ACID PERMEASE 11G		4	OsAAP19 in Zhao et al. 2012. GO:0003333: amino acid transmembrane transport.	 Biochemical character	Os04g0490833/Os04g0490900	LOC_Os04g41350.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
18504	LHT2	OsLHT2	LYSINE AND HISTIDINE TRANSPORTER 2	lysine and histidine transporter 2, lysine-histidine-like transporter 2	LYSINE AND HISTIDINE TRANSPORTER 2		12	PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0244400	LOC_Os12g14100.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane, GO:0043200 - response to amino acid stimulus, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009047 - stem 
18505	LHT8	OsLHT8, OsLHT3, LHT3	LYSINE-HISTIDINE-LIKE TRANSPORTER 8	lysine-histidine-like transporter 8, lysine and histidine transporter 3	LYSINE-HISTIDINE-LIKE TRANSPORTER 8		5	OsLHT3 in Zhao et al. 2012, Fan et al. 2023. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0237800	LOC_Os05g14820.1				GO:0043200 - response to amino acid stimulus, GO:0005886 - plasma membrane, GO:0006865 - amino acid transport, GO:0016021 - integral to membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009047 - stem 
18506	LHT9	OsLHT9, OsLHT4, LHT4	LYSINE-HISTIDINE-LIKE TRANSPORTER 9	lysine-histidine-like transporter 9, lysine and histidine transporter 4	LYSINE-HISTIDINE-LIKE TRANSPORTER 9		4	OsLHT4 in Zhao et al. 2012, Fan et al. 2023. GO:1904844: response to L-glutamine.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0462400	LOC_Os04g38860.1, LOC_Os04g38860.2				GO:0043200 - response to amino acid stimulus, GO:0005886 - plasma membrane, GO:0006865 - amino acid transport, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0080053 - response to phenylalanine	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath 
18507	LHT7	OsLHT7, OsLHT5, LHT5	LYSINE-HISTIDINE-LIKE TRANSPORTER 7	lysine-histidine-like transporter 7, lysine and histidine transporter 5	LYSINE-HISTIDINE-LIKE TRANSPORTER 7		4	OsLHT5 in Zhao et al. 2012, Fan et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0562100	LOC_Os04g47420.1				GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0016021 - integral to membrane, GO:0006865 - amino acid transport, GO:0005886 - plasma membrane, GO:0031348 - negative regulation of defense response	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0020104 - leaf sheath 
18508	LHT4A	OsLHT4A, OsLHT6, LHT6	LYSINE-HISTIDINE-LIKE TRANSPORTER 4A	lysine-histidine-like transporter 4A, lysine and histidine transporter 6	LYSINE-HISTIDINE-LIKE TRANSPORTER 4A		12	OsLHT6 in Zhao et al. 2012, Fan et al. 2023. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0485600	LOC_Os12g30040.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0010075 - regulation of meristem growth, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006865 - amino acid transport, GO:0005829 - cytosol, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0009005 - root , PO:0009049 - inflorescence , PO:0020148 - shoot apical meristem , PO:0020104 - leaf sheath 
18509	_	OsGAT1	_	gamma-aminobutyric acid transporter 1			5	LOC_Os05g50920.	 Biochemical character	Os05g0586500	LOC_Os05g50920.1				GO:0016021 - integral to membrane		
18510	_	OsGAT2	_	gamma-aminobutyric acid transporter 2			1	LOC_Os01g43320.	 Biochemical character	Os01g0621200	LOC_Os01g43320.1				GO:0016021 - integral to membrane		
18511	_	OsGAT3	_	gamma-aminobutyric acid transporter 3			1	LOC_Os01g63854.	 Biochemical character	Os01g0857400	LOC_Os01g63854.1				GO:0015185 - L-gamma-aminobutyric acid transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
18512	_	OsGAT4	_	gamma-aminobutyric acid transporter 4			10	LOC_Os10g27980.	 Biochemical character	Os10g0415100	LOC_Os10g27980.1				GO:0016021 - integral to membrane		
18513	PROT1	OsProT1, ProT1	PROLINE TRANSPORTER 1	proline transporter 1, Pro transporter 1	PROLINE TRANSPORTER 1		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0908600	LOC_Os01g68050.2, LOC_Os01g68050.1				GO:0015812 - gamma-aminobutyric acid transport, GO:0015824 - proline transport, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		PO:0020104 - leaf sheath , PO:0005004 - shoot node 
18514	PROT3	OsProT3, ProT3	PROLINE TRANSPORTER 3	proline transporter 3	PROLINE TRANSPORTER 3		7	Q69LA1. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0100800	LOC_Os07g01090.2, LOC_Os07g01090.1				GO:0015824 - proline transport, GO:0046686 - response to cadmium ion, GO:0006865 - amino acid transport, GO:0015812 - gamma-aminobutyric acid transport, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0005004 - shoot node , PO:0009053 - peduncle , PO:0025034 - leaf , PO:0009005 - root 
18515	_	OsANT1	_	aromatic and neutral amino acid transporter 1			7	LOC_Os07g12770.	 Biochemical character	Os07g0231400	LOC_Os07g12770.1				GO:0016021 - integral to membrane		
18516	_	OsANT2	_	aromatic and neutral amino acid transporter 2			3	LOC_Os03g60260.	 Biochemical character	Os03g0817200	LOC_Os03g60260.1				GO:0016021 - integral to membrane		
18517	_	OsANT3	_	aromatic and neutral amino acid transporter 3			2	LOC_Os02g44980.	 Biochemical character	Os02g0670900	LOC_Os02g44980.1				GO:0016021 - integral to membrane		
18518	_	OsANT4, ANT4, FCO8	_	aromatic and neutral amino acid transporter 4, Functioning in Cesium Over-transport 8			4	LOC_Os04g47780.	 Biochemical character	Os04g0565500	LOC_Os04g47780.1				GO:0030001 - metal ion transport, GO:0016021 - integral to membrane		
18519	_	OsATL1	_	amino acid transporter-like 1			6	LOC_Os06g43700.	 Biochemical character	Os06g0644700	LOC_Os06g43700.1				GO:0016021 - integral to membrane, GO:0006865 - amino acid transport		
18520	_	OsATL2	_	amino acid transporter-like 2			9	LOC_Os09g26290.	 Biochemical character		LOC_Os09g26290				GO:0016021 - integral to membrane		
18521	_	OsATL3	_	amino acid transporter-like 3			2	LOC_Os02g49510.	 Biochemical character	Os02g0727100	LOC_Os02g49510.1				GO:0016021 - integral to membrane		
18522	_	OsATL5	_	amino acid transporter-like 5			6	LOC_Os06g42720.	 Biochemical character	Os06g0633800	LOC_Os06g42720.1				GO:0016021 - integral to membrane		
18523	_	OsATL6	_	amino acid transporter-like 6			2	LOC_Os02g09810	 Biochemical character	Os02g0191300	LOC_Os02g09810.1, LOC_Os02g09810.2, LOC_Os02g09810.3				GO:0016021 - integral to membrane		
18524	_	OsATL7	_	amino acid transporter-like 7			1	LOC_Os01g61044.	 Biochemical character	Os01g0825800	LOC_Os01g61044.1, LOC_Os01g61044.2				GO:0016021 - integral to membrane		
18525	_	OsATL8	_	amino acid transporter-like 8			11	LOC_Os11g19240.	 Biochemical character	Os11g0298000	LOC_Os11g19240.1				GO:0016021 - integral to membrane		
18526	_	OsATL9	_	amino acid transporter-like 9			2	LOC_Os02g54730.	 Biochemical character	Os02g0788800	LOC_Os02g54730.1				GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane		
18527	_	OsATL10	_	amino acid transporter-like 10			12	LOC_Os12g38570.	 Biochemical character	Os12g0574000	LOC_Os12g38570.1				GO:0016021 - integral to membrane		
18528	_	OsATL11, OsAux/LAX1, OSLAX1	_	amino acid transporter-like 11, OsAux/LAX1 protein			2	LOC_Os02g01100.	 Biochemical character	Os02g0101000	LOC_Os02g01100.1, LOC_Os02g01100.2, LOC_Os02g01100.3				GO:0009734 - auxin mediated signaling pathway, GO:0016021 - integral to membrane	TO:0000163 - auxin sensitivity	
18529	_	OsATL12	_	amino acid transporter-like 12			6	LOC_Os06g12320.	 Biochemical character	Os06g0228500	LOC_Os06g12320.1				GO:0016021 - integral to membrane		
18530	_	OsATL13	_	amino acid transporter-like 13			4	LOC_Os04g38680.	 Biochemical character	Os04g0460300	LOC_Os04g38680.1				GO:0016021 - integral to membrane		
18532	_	OsATL15, ATL15	_	amino acid transporter-like 15			1	LOC_Os01g41420. BF889462.	 Biochemical character	Os01g0597600	LOC_Os01g41420.1				GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane	TO:0000172 - jasmonic acid sensitivity	
18533	_	OsATL16, OsSTA21	_	amino acid transporter-like 16			1	LOC_Os01g41400. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0597400	LOC_Os01g41400.1				GO:0016021 - integral to membrane		PO:0009066 - anther 
18534	_	OsATL17, OsSTA19	_	amino acid transporter-like 17			1	LOC_Os01g40410. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os01g0586500	LOC_Os01g40410.1				GO:0016021 - integral to membrane		PO:0009066 - anther 
18535	_	OsCAT1	_	cationic amino acid transporter 1			1	LOC_Os01g11160.	 Biochemical character	Os01g0209800	LOC_Os01g11160.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18536	CAT2	OsCAT2	CATIONIC AMINO ACID TRANSPORTER 2 	cationic amino acid transporter 2	CATIONIC AMINO ACID TRANSPORTER 2 		2		 Biochemical character	Os02g0655700	LOC_Os02g43860.1, LOC_Os02g43860.2				GO:0006635 - fatty acid beta-oxidation, GO:0015171 - amino acid transmembrane transporter activity, GO:0016558 - protein import into peroxisome matrix, GO:0005774 - vacuolar membrane, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane		
18537	_	OsCAT3	_	cationic amino acid transporter 3			3	LOC_Os03g43970.	 Biochemical character	Os03g0641200	LOC_Os03g43970.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18538	CAT4	OsCAT4	CATIONIC AMINO ACID TRANSPORTER 4	cationic amino acid transporter 4, MEU22 homolog	CATIONIC AMINO ACID TRANSPORTER 4		3	protein amino acid permease. an OsAM1-responsive rice meiotic gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os03g0654400	LOC_Os03g45170.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0007126 - meiosis, GO:0016021 - integral to membrane		
18539	_	OsCAT5	_	cationic amino acid transporter 5			4	LOC_Os04g45950.	 Biochemical character	Os04g0543600	LOC_Os04g45950.1, LOC_Os04g45950.2				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18540	_	OsCAT6	_	cationic amino acid transporter 6			6	LOC_Os06g34830.	 Biochemical character	Os06g0539400	LOC_Os06g34830.1				GO:0009741 - response to brassinosteroid stimulus, GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
18541	CAT7	OsCAT7	CATIONIC AMINO ACID TRANSPORTER 7	cationic amino acid transporter 7	CATIONIC AMINO ACID TRANSPORTER 7		10		 Biochemical character	Os10g0437100	LOC_Os10g30090.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18542	_	OsCAT8	_	cationic amino acid transporter 8			11	LOC_Os11g05690.	 Biochemical character	Os11g0155500	LOC_Os11g05690.1, LOC_Os11g05690.2, LOC_Os11g05690.3				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18543	_	OsCAT9	_	cationic amino acid transporter 9			12	LOC_Os12g06060.	 Biochemical character	Os12g0156866	LOC_Os12g06060.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18544	_	OsCAT10	_	cationic amino acid transporter 10			12	LOC_Os12g41890.	 Biochemical character	Os12g0613100	LOC_Os12g41890.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18545	CAT11	OsCAT11	CATIONIC AMINO ACID TRANSPORTER 11	cationic amino acid transporter 11	CATIONIC AMINO ACID TRANSPORTER 11		12		 Biochemical character	Os12g0623500	LOC_Os12g42850.3, LOC_Os12g42850.2, LOC_Os12g42850.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18546	_	OsBAT1	_	bi-directional amino acid transporter 1			1	LOC_Os01g42234. B9EXZ6.	 Biochemical character	Os01g0607200	LOC_Os01g42234.1, LOC_Os01g42234.2				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18547	_	OsBAT2	_	bi-directional amino acid transporter 2			1	LOC_Os01g71700.	 Biochemical character	Os01g0945100	LOC_Os01g71700.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18548	_	OsBAT3	_	bi-directional amino acid transporter 3			1	LOC_Os01g71710.	 Biochemical character	Os01g0945200	LOC_Os01g71710.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18549	_	OsBAT4	_	bi-directional amino acid transporter 4			1	LOC_Os01g71720.	 Biochemical character	Os01g0945300	LOC_Os01g71720.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18550	_	OsBAT5	_	bi-directional amino acid transporter 5			1	LOC_Os01g71740.	 Biochemical character	Os01g0945600	LOC_Os01g71740.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18551	_	OsBAT6	_	bi-directional amino acid transporter 6			1	LOC_Os01g71760.	 Biochemical character	Os01g0945700	LOC_Os01g71760.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18552	_	OsBAT7	_	bi-directional amino acid transporter 7			4	LOC_Os04g35540.	 Biochemical character	Os04g0435100	LOC_Os04g35540.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18553	_	OsLAT2	_				3	LOC_Os03g25840. a polyamine H+-symporter.	 Biochemical character	Os03g0374900	LOC_Os03g25840.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18554	_	OsLAT3	_				3	LOC_Os03g25869. a polyamine H+-symporter.	 Biochemical character	Os03g0375300	LOC_Os03g25869.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18555	_	OsLAT4, LAT4	_				3	a polyamine H+-symporter.	 Biochemical character	Os03g0375900/Os03g0375966	LOC_Os03g25920.1				GO:0016021 - integral to membrane, GO:0015171 - amino acid transmembrane transporter activity		
18556	_	OsLAT6	_				8	LOC_Os08g41370. a polyamine H+-symporter.	 Biochemical character	Os08g0525300	LOC_Os08g41370.1				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane		
18557	RLCK103	GUDK, OsRLCK103	RECEPTOR-LIKE CYTOPLASMIC KINASE 103	GROWTH UNDER DROUGHT KINASE, Receptor-like Cytoplasmic Kinase 103	RECEPTOR-LIKE CYTOPLASMIC KINASE 103	gudk, gudk-1, gudk-2	3	LOC_Os03g08170.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed,  Reproductive organ - panicle	Os03g0179400	LOC_Os03g08170.1				GO:0006970 - response to osmotic stress, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0000303 - cold tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000457 - total biomass yield, TO:0000615 - abscisic acid sensitivity, TO:0000396 - grain yield, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000095 - osmotic response sensitivity, TO:0000227 - root length	PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
18558	_	RcbX, RbcX	_				8	LOC_Os08g32930. GO:0061077: chaperone-mediated protein folding. a chaperone for RuBisCO. RcbX in Ramegowda et al. 2014.	 Tolerance and resistance - Stress tolerance	Os08g0425200	LOC_Os08g32930.1, LOC_Os08g32930.2				GO:0009414 - response to water deprivation, GO:0009718 - anthocyanin biosynthetic process, GO:0009534 - chloroplast thylakoid	TO:0000276 - drought tolerance	
18559	S40-1 	Dfu584, Duf584, OsS40-1	S40 PROTEIN 1	DUF584 domain-containing protein, S40 protein 1	S40 PROTEIN 1	oss40-1, Oss40-1.1, Oss40-1.2	5	GO:1901698: response to nitrogen compound. GO:1900057: positive regulation of leaf senescence.TO:0012012: leaf senescence duration.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance	Os05g0531100	LOC_Os05g45450.1				GO:0009737 - response to abscisic acid stimulus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0010150 - leaf senescence, GO:0009646 - response to absence of light, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation	TO:0000495 - chlorophyll content, TO:0000460 - light intensity sensitivity, TO:0000074 - blast disease, TO:0000011 - nitrogen sensitivity, TO:0000249 - leaf senescence, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000326 - leaf color, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000615 - abscisic acid sensitivity, TO:0000466 - carbon content, TO:0000276 - drought tolerance	PO:0001054 - 4 leaf senescence stage , PO:0009005 - root , PO:0009010 - seed 
18560	LAC3	OsChI1, ChI1, OsLAC3	LACCASE 3	chilling inducible gene 1, lactase, lactase 3	LACCASE 3		1	a putative laccase precursor protein. Q941X2. GO:0052716: hydroquinone:oxygen oxidoreductase activity. photosynthetic electron transport related gene. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0827300	LOC_Os01g61160.1				GO:0000302 - response to reactive oxygen species, GO:0009414 - response to water deprivation, GO:0046274 - lignin catabolic process, GO:0009409 - response to cold, GO:0005507 - copper ion binding, GO:0009651 - response to salt stress, GO:0048046 - apoplast, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion	TO:0000276 - drought tolerance, TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity, TO:0000303 - cold tolerance	PO:0009089 - endosperm 
18561	LAC21	OsLAC21	LACCASE 21	laccase 21	LACCASE 21		11	laccase-like multicopper oxidase. LMCO. LOC_Os11g01730. Q2RBK2. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0108700 	LOC_Os11g01730.1				GO:0048046 - apoplast, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0009651 - response to salt stress, GO:0046274 - lignin catabolic process, GO:0009414 - response to water deprivation, GO:0005507 - copper ion binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18562	LAC27	OsLAC27	LACCASE 27	laccase 27	LACCASE 27		12	laccase-like multicopper oxidase. LMCO. LOC_Os12g01730. Q2QYS3. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os12g0108000	LOC_Os12g01730.1				GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process		
18563	LAC12	OsLAC12	LACCASE 12	laccase 12	LACCASE 12		3	laccase-like multicopper oxidase. LMCO.	 Biochemical character	Os03g0297900	LOC_Os03g18640.1				GO:0005507 - copper ion binding		PO:0009089 - endosperm 
18564	LAC9	OsLAC9	LACCASE 9	laccase 9	LACCASE 9		1	laccase-like multicopper oxidase. LMCO. Q0JHP8. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os01g0850800	LOC_Os01g63200.1				GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process		
18565	LAC8	OsLAC8, OsLAC7, LAC7	LACCASE 8	laccase 8	LACCASE 8		1	laccase-like multicopper oxidase. LMCO. Q5N7B4. GO:0052716: hydroquinone:oxygen oxidoreductase activity. OsLAC7 in Swetha et al. 2018. miR397-targeted laccase. OsmiR397b target laccase (LAC) gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0850700	LOC_Os01g63190.3, LOC_Os01g63190.1				GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0005507 - copper ion binding	TO:0006001 - salt tolerance	PO:0009089 - endosperm 
18566	LAC5	OsLAC5	LACCASE 5	laccase 5	LACCASE 5		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g62490. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os01g0842500	LOC_Os01g62490.1				GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0005507 - copper ion binding		
18567	LAC14	OsLAC14, OsLAC13, LAC13	LACCASE 14	lactase, laccase 14	LACCASE 14		5	laccase-like multicopper oxidase. LMCO. LOC_Os05g38410. Q0DHL2. GO:0052716: hydroquinone:oxygen oxidoreductase activity. photosynthetic electron transport related gene. OsLAC13 in Swetha et al. 2018.	 Biochemical character	Os05g0458500	LOC_Os05g38410.1				GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process		PO:0009037 - lemma , PO:0009030 - carpel , PO:0009038 - palea 
18569	LAC26	OsLAC26	LACCASE 26	laccase 26	LACCASE 26		11	laccase-like multicopper oxidase. LMCO. LOC_Os11g48060. Q0IQU1. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os11g0708100	LOC_Os11g48060.1				GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process, GO:0009507 - chloroplast		
18570	LAC2	OsLAC2	LACCASE 2	laccase 2	LACCASE 2		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g44330. Q8RYM9. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os01g0634500	LOC_Os01g44330.1				GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0010413 - glucuronoxylan metabolic process, GO:0045492 - xylan biosynthetic process		
18571	LAC10	OsLAC10	LACCASE 10	laccase 10	LACCASE 10		2	laccase-like multicopper oxidase. LMCO. LOC_Os02g51440. Q6Z8L2. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0749700	LOC_Os02g51440.1				GO:0009414 - response to water deprivation, GO:0046688 - response to copper ion, GO:0009651 - response to salt stress, GO:0010288 - response to lead ion, GO:0046685 - response to arsenic, GO:0010038 - response to metal ion, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast	TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity, TO:0000034 - chromium sensitivity, TO:0000276 - drought tolerance	
18572	LAC18	OsLAC18	LACCASE 18	laccase 18	LACCASE 18		10	laccase-like multicopper oxidase. LMCO. LOC_Os10g30120.	 Biochemical character		LOC_Os10g30120				GO:0005507 - copper ion binding		
18573	LAC1	OsLAC1	LACCASE 1	laccase 1	LACCASE 1		1	laccase-like multicopper oxidase. LMCO. LOC_Os01g27700. Q5ZCW1. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0374600	LOC_Os01g27700.1				GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0010038 - response to metal ion, GO:0005507 - copper ion binding	TO:0000034 - chromium sensitivity	
18574	LAC19	OsLAC19	LACCASE 19	laccase 19	LACCASE 19		10	laccase-like multicopper oxidase. LMCO. LOC_Os10g30140. Q7XE50. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0437400	LOC_Os10g30140.1				GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0005739 - mitochondrion, GO:0046274 - lignin catabolic process, GO:0005507 - copper ion binding, GO:0010038 - response to metal ion	TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity, TO:0000163 - auxin sensitivity	
18575	LAC25	OsLAC25	LACCASE 25	laccase 25	LACCASE 25		11	laccase-like multicopper oxidase. LMCO. LOC_Os11g47390. Q2QZ80. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os11g0696900	LOC_Os11g47390.1				GO:0046274 - lignin catabolic process, GO:0005507 - copper ion binding, GO:0048046 - apoplast		
18576	DI19-1	OsDi19-1	DROUGHT-INDUCED 19-1	drought-induced 19-1, dehydration-induced 19-1	DROUGHT-INDUCED 19-1		5	Q688X9.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os05g0562200	LOC_Os05g48800.1, LOC_Os05g48800.2, LOC_Os05g48800.3				GO:0009408 - response to heat, GO:0009845 - seed germination, GO:0034059 - response to anoxia	TO:0000259 - heat tolerance	PO:0007057 - 0 seed germination stage 
18577	_	OsDi19-2	_	drought-induced 19-2			5	LOC_Os05g28980. Q5W794.		Os05g0358000	LOC_Os05g28980.1, LOC_Os05g28980.2, LOC_Os05g28980.3, LOC_Os05g28980.6						
18578	_	OsDi19-3	_	drought-induced 19-3			1	LOC_Os01g48190. Q5QMP3.	 Tolerance and resistance - Stress tolerance	Os01g0672400	LOC_Os01g48190.1, LOC_Os01g48190.2, LOC_Os01g48190.3				GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	
18579	_	OsDi19-4, Di19-4	_	drought-induced 19-4, drought-induced 19 protein 4			2	LOC_Os02g20170. Q6H6E6. GO:0090333: regulation of stomatal closure. TO:0020097: stomatal opening.	 Tolerance and resistance - Stress tolerance	Os02g0304900	LOC_Os02g20170.1				GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0000302 - response to reactive oxygen species, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0010119 - regulation of stomatal movement, GO:0010187 - negative regulation of seed germination, GO:0009651 - response to salt stress	TO:0000520 - stomatal closure rate, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	
18580	DI19-5	OsDi19-5	DROUGHT-INDUCED 19-5	drought-induced 19-5	DROUGHT-INDUCED PROTEIN 19-5		1	Q5JME8. GO:1901001: negative regulation of response to salt stress. GO:0001217: DNA-binding transcription repressor activity.	 Tolerance and resistance - Stress tolerance	Os01g0971100	LOC_Os01g73960.1, LOC_Os01g73960.2				GO:0005634 - nucleus, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance	
18581	_	OsDi19-6	_	drought-induced 19-6			5	LOC_Os05g01730. Q7XBA5.		Os05g0107900	LOC_Os05g01730.1, LOC_Os05g01730.2, LOC_Os05g01730.3						
18582	_	OsDi19-7	_	drought-induced 19-7			12	LOC_Os12g36900.		Os12g0556100	LOC_Os12g36900.1						
18583	_	OsGME1, GME1	_	GDP-D-mannose-3', 5'-epimerase 1, GDP-D-mannose epimerase 1		osgme1-1, osgme1-2	10	an AsA (ascorbate) biosynthetic gene. A3C4S4. BF889452.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os10g0417600	LOC_Os10g28200.1, LOC_Os10g28200.2				GO:0050662 - coenzyme binding, GO:0050832 - defense response to fungus, GO:0047918 - GDP-mannose 3,5-epimerase activity, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0010043 - response to zinc ion	TO:0000436 - spikelet sterility, TO:0000382 - 1000-seed weight, TO:0000371 - yield trait, TO:0000351 - zinc sensitivity, TO:0000448 - filled grain percentage, TO:0000074 - blast disease	
18585	GL3.2	GL3.2	GRAIN LENGTH 3.2	Grain Length 3.2			3	a CYP78A13 paralog.	 Biochemical character,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os03g0417700	LOC_Os03g30420.1				GO:0080113 - regulation of seed growth, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000391 - seed size, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000397 - grain size	
18586	_	OsMULE-JSS1	_	OsMULE-japonica specific sequence 1, OsMULE/JSS element 1, Mutator-like element JSS1			1	AP003286: 37694124-37696640.	 Other						GO:0032196 - transposition		
18587	_	OsMULE-JS2	_	Mutator-like element JS2			1	AP003343: 30249273-30249408. an OsMULE element in japonica rice cultivar.	 Other						GO:0032196 - transposition		
18588	_	OsMULE-JS3	_	Mutator-like element JS3			2	AP005115: 33673076-33673214. an OsMULE element in japonica rice cultivar.	 Other						GO:0032196 - transposition		
18589	_	OsMULE-JS4	_	Mutator-like element JS4			2	AP005287: 32267864-32267999. an OsMULE element in japonica rice cultivar.	 Other						GO:0032196 - transposition		
18590	_	OsMULE-JS5	_	Mutator-like element JS5			11	AC120984: 23547301-23547436.	 Other						GO:0032196 - transposition		
18591	_	OsMULE-IS6	_	Mutator-like element IS6			1	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18592	_	OsMULE-IS7	_	Mutator-like element IS7			1	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18593	_	OsMULE-IS8	_	Mutator-like element IS8			2	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18594	_	OsMULE-IS9	_	Mutator-like element IS9			5	an OsMULE element in indica rice cultivar.	 Other						GO:0032196 - transposition		
18595	_	OsMSH4, MSH4	_	the rice homolog of MSH4, MutS-homolog 4		Osmsh4, Osmsh4-1, Osmsh4-2, Osmsh4-3, Osmsh4-4	7	MutS protein. LOC_Os07g30240.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0486000	LOC_Os07g30240.1				GO:0043247 - telomere maintenance in response to DNA damage, GO:0007062 - sister chromatid cohesion, GO:0010332 - response to gamma radiation, GO:0010777 - meiotic mismatch repair involved in reciprocal meiotic recombination, GO:0010564 - regulation of cell cycle process, GO:0051026 - chiasma formation, GO:0048229 - gametophyte development, GO:0045132 - meiotic chromosome segregation, GO:0005634 - nucleus, GO:0042138 - meiotic DNA double-strand break formation, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0030983 - mismatched DNA binding, GO:0000794 - condensed nuclear chromosome, GO:0043073 - germ cell nucleus, GO:0032204 - regulation of telomere maintenance, GO:0007067 - mitosis, GO:0007126 - meiosis, GO:0032504 - multicellular organism reproduction, GO:0007129 - synapsis, GO:0000911 - cytokinesis by cell plate formation, GO:0005524 - ATP binding, GO:0007276 - gamete generation, GO:0006302 - double-strand break repair, GO:0006312 - mitotic recombination	TO:0000053 - pollen sterility	
18598	CEP1	OsCEP1, OsCEP4, CEP4	C-TERMINALLY ENCODED PEPTIDE 1	C-terminally encoded peptide 4	C-TERMINALLY ENCODED PEPTIDE 1		3	OsCEP4 in Aggarwal et al. 2020.		Os03g0394200	LOC_Os03g27680.1						PO:0009005 - root 
18599	CEP2	OsCEP2, OsCEP4, CEP4, OsCEP5, CEP5	C-TERMINALLY ENCODED PEPTIDE 2	C-terminally encoded peptide 5	C-TERMINALLY ENCODED PEPTIDE 2		3	OsCEP2 and OsCEP4 in Sui et al. 2016. The full length cDNA sequence of OsCEP2 (EAY90324.1, 93-11) was likely the same as that of OsCEP4 (AAP04189.1, Nipponbare), because they were mapped to the same position on the short arm of chromosome 3 with only one SNP between them, which was most likely caused by different subspecies (Sui et al. 2016). OsCEP5 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance		LOC_Os03g27690				GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009006 - shoot system 
18600	CEP3	OsCEP3, OsCEP6, CEP6	C-TERMINALLY ENCODED PEPTIDE 3	C-terminally encoded peptide 6	C-TERMINALLY ENCODED PEPTIDE 3		3	OsCEP6 in Aggarwal et al. 2020.			LOC_Os03g27740						PO:0009005 - root 
18601	CEP5	OsCEP5, OsCEP14, CEP14	C-TERMINALLY ENCODED PEPTIDE 5	C-terminally encoded peptide 14	C-TERMINALLY ENCODED PEPTIDE 5		9	OsCEP14 in Aggarwal et al. 2020. TO:0000847: panicle anatomy and morphology trait.	 Reproductive organ - panicle		LOC_Os09g28780						PO:0009049 - inflorescence 
18602	CEP6	OsCEP6, OsCEP6.1, CEP6.1, OsCEP13, CEP13	C-TERMINALLY ENCODED PEPTIDE 6	C-terminally encoded peptide 13	C-TERMINALLY ENCODED PEPTIDE 6	cep6.1, cep6.1-1, cep6.1-2	8	TO:0000847: panicle anatomy and morphology trait. OsCEP6.1 in Sui et al. 2016. GO:2000280: regulation of root development. OsCEP13 in Aggarwal et al. 2020. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os08g0475500	LOC_Os08g37070.1				GO:0048364 - root development, GO:0010229 - inflorescence development, GO:0008361 - regulation of cell size, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0080050 - regulation of seed development, GO:0048831 - regulation of shoot development, GO:0006995 - cellular response to nitrogen starvation, GO:0009735 - response to cytokinin stimulus	TO:0000621 - inflorescence development trait, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000654 - shoot development trait, TO:0000656 - root development trait, TO:0000167 - cytokinin sensitivity, TO:0000590 - grain weight, TO:0000382 - 1000-seed weight, TO:0000207 - plant height, TO:0000227 - root length, TO:0000276 - drought tolerance, TO:0000149 - seed width, TO:0000734 - grain length, TO:0000402 - grain width, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000575 - endosperm related trait, TO:0000391 - seed size, TO:0000653 - seed development trait	PO:0007089 - stem elongation stage , PO:0009049 - inflorescence , PO:0007520 - root development stage , PO:0001170 - seed development stage , PO:0009006 - shoot system , PO:0001083 - inflorescence development stage 
18603	CEP7	OsCEP7, OsCEP7.1, CEP7.1	C-TERMINALLY ENCODED PEPTIDE 7		C-TERMINALLY ENCODED PEPTIDE 7		6	OsCEP7.1 in Sui et al. 2016.		Os06g0710001							
18604	HYPRP2	OsHyPRP02, HyP/GRP02, OsHyPRP2, HyP/GRP2, HyPRP2	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 2	hybrid proline- or glycine-rich protein 2, Hybrid Proline-Rich Protein 2	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 2		2			Os02g0662100 	LOC_Os02g44320.1						
18605	_	OsHyPRP03, HyP/GRP03, OsHyPRP3, HyP/GRP3, LTP1	_	hybrid proline- or glycine-rich protein 3			3	LOC_Os03g01300. KC611132-KC611144 (O. sativa and wild rice species, complete cds).		Os03g0103100 	LOC_Os03g01300.1						
18606	HYPRP4	OsHyPRP04, HyP/GRP04, OsHyPRP4, HyP/GRP4	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 4	hybrid proline- or glycine-rich protein 4, Hybrid Proline-Rich Protein 4	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 4		3		 Tolerance and resistance - Disease resistance	Os03g0103200 	LOC_Os03g01300.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18607	HYPRP6	OsHyPRP06, HyP/GRP06, OsHyPRP6, HyP/GRP6, OsHyPRP12, HyPRP12	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 6	hybrid proline- or glycine-rich protein 6, Hybrid Proline-Rich Protein 12	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 6		4	OsHyPRP12 in Kapoor et al. 2019.		Os04g0554500 	LOC_Os04g46810.1						
18608	HYPRP7	OsHyPRP07, HyP/GRP07, OsHyPRP7, HyP/GRP7, OsHyPRP13, HyPRP13	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 7	hybrid proline- or glycine-rich protein 7, Hybrid Proline-Rich Protein 13	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 7		4	OsHyPRP13 in Kapoor et al. 2019.		Os04g0554600 	LOC_Os04g46820.1						
18609	HYPRP8	OsHyPRP08, HyP/GRP08, OsHyPRP8, HyP/GRP8, OsHyPRP14, HyPRP14	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 8	hybrid proline- or glycine-rich protein 8, Hybrid Proline-Rich Protein 14	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 8		4	AGP (Arabinogalactan protein). PO:0030123: panicle inflorescence. OsHyPRP14 in Kapoor et al. 2019.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0554800 	LOC_Os04g46830.2, LOC_Os04g46830.1				GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000259 - heat tolerance	
18610	HYPRP9	OsHyPRP09, HyP/GRP09, OsHyPRP9, HyP/GRP9, OsHyPRP29, HyPRP29	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 9	hybrid proline- or glycine-rich protein 9, Hybrid Proline-Rich Protein 29	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 9		10	OsHyPRP29 in Kapoor et al. 2019.		Os10g0349300 	LOC_Os10g20830.1						
18611	HYPRP10	OsHyPRP10, HyP/GRP10, OsHyPRP30, HyPRP30	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 10	hybrid proline- or glycine-rich protein 10, Hybrid Proline-Rich Protein 30	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 10		10	OsHyPRP30 in Kapoor et al. 2019.		Os10g0349400 	LOC_Os10g20840.1						
18612	HYPRP11	OsHyPRP11, HyP/GRP11, OsHyPRP31, HyPRP31	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 11	hybrid proline- or glycine-rich protein 11, Hybrid Proline-Rich Protein 31	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 11		10	OsHyPRP31 in Kapoor et al. 2019.		Os10g0349600 	LOC_Os10g20860.1						
18613	HYPRP12	OsHyPRP12, HyP/GRP12, OsHyPRP32, HyPRP32	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 12	hybrid proline- or glycine-rich protein 12, Hybrid Proline-Rich Protein 32	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 12		10	OsHyPRP32 in Kapoor et al. 2019.	 Tolerance and resistance - Disease resistance	Os10g0349900 	LOC_Os10g20890.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18614	_	OsHyPRP14, HyP/GRP14	_	hybrid proline- or glycine-rich protein 14			10	LOC_Os10g40440.		Os10g0551900 	LOC_Os10g40440.1						
18615	HYPRP15	OsHyPRP15, HyP/GRP15, OsHyPRP36, HyPRP36	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 15	hybrid proline- or glycine-rich protein 15, Hybrid Proline-Rich Protein 36	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 15		10	OsHyPRP36 in Kapoor et al. 2019.			LOC_Os10g40460.1						
18616	HYPRP16	OsHyPRP16, HyP/GRP16, OsHyPRP37, HyPRP37	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 16	hybrid proline- or glycine-rich protein 16, Hybrid Proline-Rich Protein 37	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 16		10	OsHyPRP37 in Kapoor et al. 2019.		Os10g0552200 	LOC_Os10g40470.1						
18617	HYPRP17	OsHyPRP17, HyP/GRP17, OsHyPRP38, HyPRP38	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 17	hybrid proline- or glycine-rich protein 17, Hybrid Proline-Rich Protein 38	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 17		10	OsHyPRP38 in Kapoor et al. 2019.		Os10g0552300 	LOC_Os10g40480.1						
18618	HYPRP18	OsHyPRP18, HyP/GRP18, OsHyPRP39, HyPRP39	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 18	hybrid proline- or glycine-rich protein 18, Hybrid Proline-Rich Protein 39	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 18		10	OsHyPRP39 in Kapoor et al. 2019.	 Tolerance and resistance - Disease resistance	Os10g0552600 	LOC_Os10g40510.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18619	HYPRP19	OsHyPRP19, HyP/GRP19, OsHyPRP40, HyPRP40	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 19	hybrid proline- or glycine-rich protein 19, Hybrid Proline-Rich Protein 40	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 19		10	OsHyPRP40 in Kapoor et al. 2019.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0552700 	LOC_Os10g40520.1				GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000303 - cold tolerance	
18620	HYPRP20	OsHyPRP20, HyP/GRP20, OsHyPRP41, HyPRP41	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 20	hybrid proline- or glycine-rich protein 20, Hybrid Proline-Rich Protein 41	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 20		10	OsHyPRP41 in Kapoor et al. 2019.		Os10g0552800 	LOC_Os10g40530.1						
18621	HYPRP21	OsHyPRP21, HyP/GRP21, OsHyPRP42, HyPRP42	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 21	hybrid proline- or glycine-rich protein 21, Hybrid Proline-Rich Protein 42	HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 21		10	a paralogous gene of qLTG3-1. AB973302, AB973303, AB973304. OsHyPRP42 in Kapoor et al. 2019.	 Seed - Physiological traits - Dormancy,  Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0554800	LOC_Os10g40614.1				GO:0050832 - defense response to fungus, GO:0009845 - seed germination, GO:0008233 - peptidase activity	TO:0000253 - seed dormancy, TO:0000074 - blast disease	
18622	_	OsCDKC;2, OsCDK2	_	CYCLIN-DEPENDENT KINASE C;2, C-type cyclin-dependent kinase 2, Cyclin-dependent kinase C-2			3	LOC_Os03g22700.	 Biochemical character	Os03g0349200	LOC_Os03g22700.1				GO:0004674 - protein serine/threonine kinase activity, GO:0051726 - regulation of cell cycle, GO:0005524 - ATP binding		
18623	_	OsCYCP4;3	_	P-type cyclin 4;3			2	LOC_Os02g03294. a PHO80 homologous protein.	 Biochemical character	Os02g0125400	LOC_Os02g03294.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity		
18624	_	OsCYCP4;4	_	P-type cyclin 4;4			4	LOC_Os04g46000. a PHO80 homologous protein.	 Biochemical character	Os04g0544200	LOC_Os04g46000.1				GO:0000079 - regulation of cyclin-dependent protein kinase activity		
18625	PP2C73	OsPP2C73, OsPP116	PROTEIN PHOSPHATASE 2C73	protein phosphatase 2C73, protein phosphatase 2C 73, protein phosphatase 116	PROTEIN PHOSPHATASE 2C73		11	Q2RBJ6. 		Os11g0109000	LOC_Os11g01790.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
18626	PP5	OsPP5, OsTOPP5, TOPP5	PROTEIN PHOSPHATASE 5	Protein phosphatase 5, type 1 protein phosphatase 5	PROTEIN PHOSPHATASE 5		1			Os01g0349400	LOC_Os01g24750.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding, GO:0004722 - protein serine/threonine phosphatase activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0017018 - myosin phosphatase activity		
18627	_	OsPP13, PPP6	_	Protein phosphatase 13, Serine/threonine-protein phosphatase 6			1	LOC_Os01g49690.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0691700	LOC_Os01g49690.1				GO:0048653 - anther development, GO:0004721 - phosphoprotein phosphatase activity		PO:0001004 - anther development stage 
18628	_	OsPP14	_	Protein phosphatase 14			1	LOC_Os01g53710.		Os01g0739200	LOC_Os01g53710.1				GO:0004725 - protein tyrosine phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046855 - inositol phosphate dephosphorylation		
18629	_	OsPP16	_	Protein phosphatase 16			1	LOC_Os01g64010.		Os01g0859400	LOC_Os01g64010.1, LOC_Os01g64010.2				GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0046855 - inositol phosphate dephosphorylation		
18630	_	OsPP17	_	Protein phosphatase 17			1	LOC_Os01g74530.		Os01g0976700	LOC_Os01g74530.2				GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
18631	PP23	OsPP23, PKG, OsPKG	PROTEIN PHOSPHATASE 23	Protein phosphatase 23, cGMP-Dependent Protein Kinase	PROTEIN PHOSPHATASE 23	pkg, pkg-1, pkg-2, pp23, cr-pp23	2	GO:0038060: nitric oxide-cGMP-mediated signaling pathway. TO:0000905: seed yield trait. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Dormancy,  Vegetative organ - Culm,  Seed - Morphological traits	Os02g0281000	LOC_Os02g17970.2, LOC_Os02g17970.1				GO:0080006 - internode patterning, GO:0004722 - protein serine/threonine phosphatase activity, GO:0009651 - response to salt stress, GO:0005952 - cAMP-dependent protein kinase complex, GO:0009740 - gibberellic acid mediated signaling, GO:0005886 - plasma membrane, GO:0030307 - positive regulation of cell growth, GO:0006470 - protein amino acid dephosphorylation, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0008603 - cAMP-dependent protein kinase regulator activity, GO:0004674 - protein serine/threonine kinase activity, GO:0000003 - reproduction, GO:0048316 - seed development, GO:0019934 - cGMP-mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0009845 - seed germination	TO:0000391 - seed size, TO:0000181 - seed weight, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000180 - spikelet fertility, TO:0000421 - pollen fertility, TO:0000145 - internode length, TO:0000430 - germination rate, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000382 - 1000-seed weight	PO:0007057 - 0 seed germination stage 
18632	_	OsPP38	_	Protein phosphatase 38			2	LOC_Os02g48840.		Os02g0720300	LOC_Os02g48840.1				GO:0005634 - nucleus, GO:0006470 - protein amino acid dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0043407 - negative regulation of MAP kinase activity		
18633	PP32	OsPP32	PROTEIN PHOSPHATASE 32	Protein phosphatase 32	PROTEIN PHOSPHATASE 32		2	Q6K1Z1.		Os02g0607400/Os02g0607433	LOC_Os02g39470.1				GO:0007049 - cell cycle, GO:0005634 - nucleus, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
18634	PP41	OsPP41, OsTOPP3, TOPP3	PROTEIN PHOSPHATASE 41	Protein phosphatase 41, type 1 protein phosphatase 3	PROTEIN PHOSPHATASE 41		2			Os02g0820000	LOC_Os02g57450.1, LOC_Os02g57450.2				GO:0046872 - metal ion binding, GO:0017018 - myosin phosphatase activity, GO:0004722 - protein serine/threonine phosphatase activity, GO:0004721 - phosphoprotein phosphatase activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
18635	SEX4	OsPP42, PP42, OsSEX4	STARCH EXCESS 4	Protein phosphatase 42, Starch Excess 4			3	an Arabidopsis thaliana SEX4 homolog in rice. polysaccharide binding phosphatase.	 Biochemical character	Os03g0107800	LOC_Os03g01750.5, LOC_Os03g01750.7, LOC_Os03g01750.6, LOC_Os03g01750.1, LOC_Os03g01750.2, LOC_Os03g01750.4				GO:0005982 - starch metabolic process, GO:0007623 - circadian rhythm, GO:0005983 - starch catabolic process, GO:0019203 - carbohydrate phosphatase activity	TO:0000696 - starch content	
18636	_	OsPP44, PP44	_	Protein phosphatase 44			3	LOC_Os03g07150. male sterility protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0167700	LOC_Os03g07150.1, LOC_Os03g07150.2				GO:0004721 - phosphoprotein phosphatase activity, GO:0007126 - meiosis		
18637	PP47	OsPP47, OsTOPP4, TOPP4	PROTEIN PHOSPHATASE 47	Protein phosphatase 47, type 1 protein phosphatase 4	PROTEIN PHOSPHATASE 47		3	P48489. Ser/Thr protein phosphatase family protein. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0268000	LOC_Os03g16110.1, LOC_Os03g16110.2, LOC_Os03g16110.3				GO:0046872 - metal ion binding, GO:0005737 - cytoplasm, GO:0004722 - protein serine/threonine phosphatase activity, GO:0017018 - myosin phosphatase activity, GO:0004721 - phosphoprotein phosphatase activity, GO:0005634 - nucleus, GO:0007126 - meiosis		
18638	_	OsPP52	_	Protein phosphatase 52			3	LOC_Os03g25600. GO:0071555: cell wall organization.		Os03g0372500	LOC_Os03g25600.1, LOC_Os03g25600.2				GO:0045010 - actin nucleation, GO:0048765 - root hair cell differentiation, GO:0009909 - regulation of flower development, GO:0043687 - post-translational protein modification, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0006406 - mRNA export from nucleus, GO:0000226 - microtubule cytoskeleton organization, GO:0010074 - maintenance of meristem identity, GO:0000911 - cytokinesis by cell plate formation, GO:0007155 - cell adhesion, GO:0004722 - protein serine/threonine phosphatase activity, GO:0046872 - metal ion binding, GO:0005543 - phospholipid binding, GO:0010090 - trichome morphogenesis, GO:0009934 - regulation of meristem structural organization, GO:0005634 - nucleus, GO:0005886 - plasma membrane		
18639	_	OsPP53	_	Protein phosphatase 53			3	LOC_Os03g27780.		Os03g0395100	LOC_Os03g27780.1, LOC_Os03g27780.2						
18640	_	OsPP56, PP56, OsPP2Ac-2, PP2Ac-2	_	Protein phosphatase 56, Phosphatase 2A isoform 2			3	LOC_Os03g59060. Q10BT5. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0805300	LOC_Os03g59060.1, LOC_Os03g59060.2				GO:0004721 - phosphoprotein phosphatase activity, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding, GO:0007126 - meiosis		
18641	_	OsPP57	_	Protein phosphatase 57			3	LOC_Os03g59470.		Os03g0809300	LOC_Os03g59470.1				GO:0003824 - catalytic activity		
18642	_	OsPP58	_	Protein phosphatase 58			3	LOC_Os03g59530.		Os03g0809700	LOC_Os03g59530.1				GO:0016301 - kinase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity		
18644	_	OsPP74	_	Protein phosphatase 74			5	LOC_Os05g11550. GO:1902325: negative regulation of chlorophyll biosynthetic process.		Os05g0204900	LOC_Os05g11550.1, LOC_Os05g11550.2				GO:0010017 - red or far red light signaling pathway, GO:0046906 - tetrapyrrole binding, GO:0046872 - metal ion binding, GO:0009506 - plasmodesma, GO:0030176 - integral to endoplasmic reticulum membrane, GO:0005829 - cytosol, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0006913 - nucleocytoplasmic transport, GO:0006470 - protein amino acid dephosphorylation, GO:0004722 - protein serine/threonine phosphatase activity, GO:0031965 - nuclear membrane		
18645	_	OsPP77	_	Protein phosphatase 77			5	LOC_Os05g44910.		Os05g0524200	LOC_Os05g44910.1				GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0004725 - protein tyrosine phosphatase activity, GO:0046855 - inositol phosphate dephosphorylation		
18646	_	OsPP82	_	Protein phosphatase 82			6	LOC_Os06g05870.		Os06g0152000	LOC_Os06g05870.1, LOC_Os06g05870.2				GO:0043407 - negative regulation of MAP kinase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0004725 - protein tyrosine phosphatase activity		
18647	PP83	OsPP83, OsTOPP2, TOPP2	PROTEIN PHOSPHATASE 83	Protein phosphatase 83, type 1 protein phosphatase 2	PROTEIN PHOSPHATASE 83		6			Os06g0164100	LOC_Os06g06880.1				GO:0004722 - protein serine/threonine phosphatase activity, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding, GO:0017018 - myosin phosphatase activity, GO:0005634 - nucleus, GO:0004721 - phosphoprotein phosphatase activity		
18648	_	OsPP99	_	Protein phosphatase 99			7	LOC_Os07g49040.		Os07g0690400	LOC_Os07g49040.1				GO:0003824 - catalytic activity		
18649	_	OsPP100	_	Protein phosphatase 100			8	LOC_Os08g29160.		Os08g0379300	LOC_Os08g29160.1				GO:0000023 - maltose metabolic process, GO:0009570 - chloroplast stroma, GO:0043085 - positive regulation of catalytic activity, GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0019203 - carbohydrate phosphatase activity, GO:0019252 - starch biosynthetic process, GO:0005983 - starch catabolic process, GO:0009569 - chloroplast starch grain		
18650	PP101	OsPP101, OsTOPP1, TOPP1	PROTEIN PHOSPHATASE 101	Protein phosphatase 101, type 1 protein phosphatase 1	PROTEIN PHOSPHATASE 101		8			Os08g0455600	LOC_Os08g35440.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0017018 - myosin phosphatase activity, GO:0004722 - protein serine/threonine phosphatase activity, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
18651	_	OsPP103	_	Protein phosphatase 103			8	LOC_Os08g40200.		Os08g0513000	LOC_Os08g40200.1				GO:0004721 - phosphoprotein phosphatase activity		
18652	_	OsPP104	_	Protein phosphatase 104			8	LOC_Os08g44320.		Os08g0557400	LOC_Os08g44320.1				GO:0004725 - protein tyrosine phosphatase activity		
18653	_	OsPP106	_	Protein phosphatase 106			9	LOC_Os09g11230.		Os09g0284200	LOC_Os09g11230.1				GO:0004721 - phosphoprotein phosphatase activity		
18654	_	OsPP112, PP112, OsPP2Ac-4, PP2Ac-4	_	Protein phosphatase 112, phosphatase 2A isoform 4			10	LOC_Os10g27050. A3C4N5.		Os10g0410600	LOC_Os10g27050.1				GO:0005737 - cytoplasm, GO:0004721 - phosphoprotein phosphatase activity, GO:0046872 - metal ion binding		
18655	PP113	OsPP113	PROTEIN PHOSPHATASE 113	Protein phosphatase 113	PROTEIN PHOSPHATASE 113		10		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0541200	LOC_Os10g39540.4, LOC_Os10g39540.3, LOC_Os10g39540.2, LOC_Os10g39540.1				GO:0003824 - catalytic activity, GO:0006470 - protein amino acid dephosphorylation, GO:0017018 - myosin phosphatase activity, GO:0046872 - metal ion binding, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	
18656	_	OsPP115	_	Protein phosphatase 115			10	LOC_Os10g41240.		Os10g0561900	LOC_Os10g41240.1, LOC_Os10g41240.2				GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0004725 - protein tyrosine phosphatase activity, GO:0006470 - protein amino acid dephosphorylation, GO:0046855 - inositol phosphate dephosphorylation		
18657	_	OsPP117	_	Protein phosphatase 117			11	LOC_Os11g02180.		Os11g0113100	LOC_Os11g02180.1				GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0009507 - chloroplast, GO:0006470 - protein amino acid dephosphorylation		
18658	_	OsPP118	_	Protein phosphatase 118			11	LOC_Os11g04180.		Os11g0136800	LOC_Os11g04180.1				GO:0006470 - protein amino acid dephosphorylation, GO:0004725 - protein tyrosine phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity		
18659	_	OsPP119	_	Protein phosphatase 119			11	LOC_Os11g11070.		Os11g0217500	LOC_Os11g11070.1, LOC_Os11g11070.2				GO:0004484 - mRNA guanylyltransferase activity, GO:0006370 - mRNA capping		
18660	_	OsPP123	_	Protein phosphatase 123			12	LOC_Os12g01770.		Os12g0108600	LOC_Os12g01770.1				GO:0003824 - catalytic activity		
18661	_	OsPP124	_	Protein phosphatase 124			12	LOC_Os12g02120.		Os12g0112500	LOC_Os12g02120.1, LOC_Os12g02120.2						
18662	_	OsPP125	_	Protein phosphatase 125			12	LOC_Os12g03990.		Os12g0133700	LOC_Os12g03990.1				GO:0006470 - protein amino acid dephosphorylation, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0004725 - protein tyrosine phosphatase activity		
18663	_	OsPP127, OsPTP1, PTP1	_	Protein phosphatase 127, protein tyrosine phosphatase 1			12	LOC_Os12g07590. OsPTP1 in Ueno et al. 2015.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0174800	LOC_Os12g07590.1, LOC_Os12g07590.2, LOC_Os12g07590.3				GO:0004725 - protein tyrosine phosphatase activity, GO:0009738 - abscisic acid mediated signaling, GO:0009863 - salicylic acid mediated signaling pathway, GO:0051707 - response to other organism, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait, TO:0000112 - disease resistance, TO:0000615 - abscisic acid sensitivity	
18664	_	OsPP128	_	Protein phosphatase 128			12	LOC_Os12g09120.		Os12g0193200	LOC_Os12g09120.1				GO:0005634 - nucleus, GO:0006370 - mRNA capping, GO:0004725 - protein tyrosine phosphatase activity, GO:0008138 - protein tyrosine/serine/threonine phosphatase activity, GO:0004651 - polynucleotide 5'-phosphatase activity, GO:0004484 - mRNA guanylyltransferase activity		
18665	PP130	OsPP130, OsPTEN, PTEN	PROTEIN PHOSPHATASE 130	Protein phosphatase 130, PHOSPHATASE AND TENSIN HOMOLOG	PROTEIN PHOSPHATASE 130		12	LOC_Os12g21890.	 Tolerance and resistance - Disease resistance	Os12g0407500	LOC_Os12g21890.1				GO:0004725 - protein tyrosine phosphatase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18666	RLCK176	OsRLCK176	RECEPTOR-LIKE CYTOPLASMIC KINASE 176	receptor-like cytoplasmic kinase 176	RECEPTOR-LIKE CYTOPLASMIC KINASE 176	osrlck176, osrlck176-1, osrlck176-2	5	a rice homolog of AtBIK1. GO:0061057: peptidoglycan recognition protein signaling pathway. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os05g0110900	LOC_Os05g02020.2, LOC_Os05g02020.1				GO:0002237 - response to molecule of bacterial origin, GO:0009741 - response to brassinosteroid stimulus, GO:0005524 - ATP binding, GO:0009742 - brassinosteroid mediated signaling, GO:0043067 - regulation of programmed cell death, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0031347 - regulation of defense response, GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0002238 - response to molecule of fungal origin	TO:0000439 - fungal disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000315 - bacterial disease resistance, TO:0000206 - leaf angle, TO:0000074 - blast disease	
18667	RLCK284	OsRLCK284, YK12, PTK16, OsPTK16, STK, OsSTK	RECEPTOR-LIKE CYTOPLASMIC KINASE 284	Receptor-like Cytoplasmic Kinase 284, Protein Tyrosine Kinase 16, SALT TOLERANCE KINASE	RECEPTOR-LIKE CYTOPLASMIC KINASE 284		9	AF230500. PO:0030123: panicle inflorescence. GO:1902884: positive regulation of response to oxidative stress. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os09g0572600 	LOC_Os09g39930.1				GO:0009739 - response to gibberellin stimulus, GO:0042542 - response to hydrogen peroxide, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity	TO:0000609 - potassium content, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000303 - cold tolerance, TO:0002662 - leaf rolling tolerance, TO:0000525 - sodium to potassium content ratio, TO:0001016 - relative chlorophyll content, TO:0000608 - sodium content, TO:0000166 - gibberellic acid sensitivity, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	PO:0020104 - leaf sheath , PO:0007616 - flowering stage , PO:0009006 - shoot system , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009047 - stem 
18668	SHR2	OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15	SHORT ROOT GENE 2	rice SHORT  ROOT gene2, SHORT-ROOT 2, SHORTROOT2, SHORT-ROOT protein 2, GRAS protein 15	PROTEIN SHORT-ROOT 2	c-osshr2-1, c-osshr2-2	3	Q75I13. A2XIA8. one of  the two rice orthologs of the Arabidopsis SHR gene. ZmSHR1 sequence (GRMZM2G132794) is orthologous to OsSHR2 (Schuler et al. 2018).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf	Os03g0433200	LOC_Os03g31880.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010374 - stomatal complex development, GO:0005634 - nucleus, GO:0051302 - regulation of cell division, GO:0007275 - multicellular organismal development, GO:0006351 - transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000043 - root anatomy and morphology trait, TO:0000255 - sheath blight disease resistance, TO:0000566 - stomatal frequency, TO:0000735 - plastochron, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000306 - root thickness, TO:0000227 - root length, TO:0000656 - root development trait	PO:0020138 - leaf lamina vein , PO:0000258 - root cortex , PO:0007520 - root development stage 
18669	SCR1	OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41	SCARECROW 1	GRAS protein 41	SCARECROW 1	c-osscr1-1, c-osscr1-2, Osscr1, Osscr1-m6, Osscr1-m7, Osscr1-m8, Osscr1-m10, Osscr1-m11	11	Q2RB59. A2ZAX5. OsSCR in Zhou et al. 2014. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Other,  Vegetative organ - Leaf,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0124300	LOC_Os11g03110.1				GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0010440 - stomatal lineage progression, GO:0010374 - stomatal complex development, GO:0006351 - transcription, DNA-dependent, GO:0007275 - multicellular organismal development	TO:0000615 - abscisic acid sensitivity, TO:0000566 - stomatal frequency, TO:0000175 - bacterial blight disease resistance, TO:0000357 - growth and development trait, TO:0000019 - seedling height, TO:0006001 - salt tolerance	
18670	PP2A-B''	OsPP2A-B''	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B''	protein phosphatase 2A B'' subunit, B'' regulatory subunit of protein phosphatase 2A	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B''		10			Os10g0476600	LOC_Os10g33680.1				GO:0005509 - calcium ion binding		
18671	CRRLK1L1	OsCrRLK1L1, CrRLK1L1, OsMRLK12, MRLK12, FLR10, OsFLR10	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 1	Catharanthus roseus receptor-like kinase1-like kinase 1, malectin/malectin-like receptor-like kinase 12, FERONIA-like receptor 10	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 1		3			Os03g0759600	LOC_Os03g55210.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
18673	CRRLK1L3	OsCrRLK1L3, CrRLK1L3, OsMRLK33, MRLK33, FLR3, OsFLR3	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 3	Catharanthus roseus receptor-like kinase1-like kinase 3, malectin/malectin-like receptor-like kinase 33, FERONIA-like receptor 3	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 3		5			Os05g0318700	LOC_Os05g25450.1, LOC_Os05g25450.2				GO:0005524 - ATP binding, GO:0007623 - circadian rhythm, GO:0016020 - membrane, GO:0005618 - cell wall, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane		PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0020103 - flag leaf 
18674	CRRLK1L4	OsCrRLK1L4, CrRLK1L4, OsMRLK2, MRLK2, FLR14, OsFLR14	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 4	Catharanthus roseus receptor-like kinase1-like kinase 4, malectin/malectin-like receptor-like kinase 2, FERONIA-like receptor 14	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 4	flr14	1		 Tolerance and resistance - Disease resistance	Os01g0155500	LOC_Os01g06280.1, LOC_Os01g06280.2				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0007623 - circadian rhythm, GO:0005524 - ATP binding	TO:0000074 - blast disease	PO:0020103 - flag leaf , PO:0025034 - leaf 
18675	CRRLK1L6	OsCrRLK1L6, CrRLK1L6, OsMRLK9, MRLK9, FLR12, OsFLR12	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 6	Catharanthus roseus receptor-like kinase1-like kinase 6, malectin/malectin-like receptor-like kinase 9, FERONIA-like receptor 12	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 6		3			Os03g0124200	LOC_Os03g03280.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity		PO:0009005 - root 
18676	CRRLK1L7	OsCrRLK1L7, CrRLK1L7, OsMRLK10, MRLK10, FLR13, OsFLR13	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 7	Catharanthus roseus receptor-like kinase1-like kinase 7, malectin/malectin-like receptor-like kinase 10, FERONIA-like receptor 13	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 7	flr13	3	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance	Os03g0281500	LOC_Os03g17300.1, LOC_Os03g17300.2, LOC_Os03g17300.3, LOC_Os03g17300.4				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0007623 - circadian rhythm, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	PO:0009010 - seed , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0020103 - flag leaf , PO:0009049 - inflorescence 
18677	DRUS1	OsCrRLK1L8, CrRLK1L8, FLR1, OsFLR1, OsMRLK11, MRLK11, OsDRUS1	DWARF AND RUNTISH SPIKELET1	Catharanthus roseus receptor-like kinase1-like kinase 8, FERONIA-Like Receptor kinase 1, DWARF AND RUNTISH SPIKELET 1, malectin/malectin-like receptor-like kinase 11, FERONIA-like receptor 1	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 8	flr1, drus1-1, drus1-2	3	rice ortholog of Arabidopsis thaliana FERONIA. GO:2000377: regulation of reactive oxygen species metabolic process. TO:1000055: shoot system calcium content. PO:0030123: panicle inflorescence. GO:2000280: regulation of root development. TO:0020103: adventitious root length.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0333200	LOC_Os03g21540.1				GO:0005618 - cell wall, GO:0019252 - starch biosynthetic process, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048364 - root development, GO:0005886 - plasma membrane, GO:0043610 - regulation of carbohydrate utilization, GO:0048653 - anther development, GO:0009738 - abscisic acid mediated signaling, GO:0010229 - inflorescence development, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0055074 - calcium ion homeostasis, GO:0006955 - immune response, GO:0050832 - defense response to fungus, GO:0009734 - auxin mediated signaling pathway, GO:0042594 - response to starvation, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000531 - anther length, TO:0000636 - relative shoot dry weight, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0000392 - sterility or fertility trait, TO:0000006 - calcium sensitivity, TO:0006036 - stem elongation, TO:0000074 - blast disease, TO:0000366 - reproductive growth time, TO:0000547 - primary branch number, TO:0000696 - starch content, TO:0000621 - inflorescence development trait, TO:0000180 - spikelet fertility, TO:0000657 - spikelet anatomy and morphology trait, TO:0000187 - anther color, TO:0000040 - panicle length, TO:0000586 - seminal root length, TO:0000516 - relative root length, TO:0000644 - relative root dry weight, TO:0001013 - lateral root number, TO:0001006 - adventitious root number, TO:0000615 - abscisic acid sensitivity, TO:0000357 - growth and development trait, TO:0000656 - root development trait, TO:0001034 - relative plant height, TO:0000564 - spikelet width	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0007089 - stem elongation stage , PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0009047 - stem , PO:0001004 - anther development stage , PO:0009049 - inflorescence 
18679	CRRLK1L10	OsCrRLK1L10, CrRLK1L10, OsMRLK20, MRLK20, FLR16, OsFLR16	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 10	Catharanthus roseus receptor-like kinase1-like kinase 10, malectin/malectin-like receptor-like kinase 20, FERONIA-like receptor 16	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 10		5		 Tolerance and resistance - Stress tolerance	Os05g0162500	LOC_Os05g06990.1				GO:0005886 - plasma membrane, GO:0048364 - root development, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0007520 - root development stage , PO:0009010 - seed 
18680	CRRLK1L12	OsCrRLK1L12, CrRLK1L12, OsMRLK30, MRLK30, FLR5, OsFLR5	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 12	Catharanthus roseus receptor-like kinase1-like kinase 12, malectin/malectin-like receptor-like kinase 30, FERONIA-like receptor 5	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 12		5		 Tolerance and resistance - Disease resistance	Os05g0317700	LOC_Os05g25350.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007623 - circadian rhythm, GO:0016020 - membrane, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0005618 - cell wall	TO:0000074 - blast disease	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem 
18682	CRRLK1L14	OsCrRLK1L14, CrRLK1L14, OsMRLK41, MRLK41, FLR15, OsFLR15	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 14	Catharanthus roseus receptor-like kinase1-like kinase 14, malectin/malectin-like receptor-like kinase 41, FERONIA-like receptor 15	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 14		6	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os06g0334300	LOC_Os06g22810.1				GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009049 - inflorescence , PO:0007520 - root development stage , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009010 - seed 
18683	CRRLK1L15	OsCrRLK1L15, CrRLK1L15, OsMRLK42, MRLK42, FLR7, OsFLR7	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 15	Catharanthus roseus receptor-like kinase1-like kinase 15, malectin/malectin-like receptor-like kinase 42, FERONIA-like receptor 7	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 15		7		 Tolerance and resistance - Stress tolerance	Os07g0147600	LOC_Os07g05370.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance	PO:0009005 - root 
18684	CRRLK1L16	OsCrRLK1L16, CrRLK1L16, OsMRLK64, MRLK64, FLR11, OsFLR11	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 16	Catharanthus roseus receptor-like kinase1-like kinase 16, malectin/malectin-like receptor-like kinase 64, FERONIA-like receptor 11	CATHARANTHUS ROSEUS RECEPTOR-LIKE KINASE1-LIKE KINASE 16	flr11	10		 Tolerance and resistance - Disease resistance	Os10g0534500	LOC_Os10g39010.5, LOC_Os10g39010.1, LOC_Os10g39010.2, LOC_Os10g39010.3, LOC_Os10g39010.4				GO:0005524 - ATP binding, GO:0007623 - circadian rhythm, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease	PO:0025034 - leaf , PO:0020103 - flag leaf 
18685	_	SAD1	_	super apical dormant 1		sad1-1	8	an ortholog of RPA34.5 (RNA polymerase I subunit A34.5).	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Vegetative organ - Root	Os08g0422600	LOC_Os08g32690.1				GO:0048364 - root development	TO:0000346 - tiller number, TO:0000235 - liguleless, TO:0000226 - auricleless, TO:0000135 - leaf length, TO:0000207 - plant height	PO:0020106 - leaf sheath auricle , PO:0007520 - root development stage , PO:0020105 - ligule , PO:0007033 - whole plant development stage 
18686	_	OsMED4	_	Mediator complex protein OsMED4			9	a component of the middle module of the Mediator complex. GO:0001104: RNA polymerase II transcription cofactor activity.		Os09g0540500	LOC_Os09g36890.1, LOC_Os09g36890.2				GO:0016592 - mediator complex		
18687	_	OsTFIIF2-1, OsRAP30-1	_	OsTFIIF2-1 of Pol II, OsTFIIF2-1 of RNA polymerase II			5	TFIIF2 ortholog. the counterpart of RPA34.5 in Pol II.		Os05g0509900	LOC_Os05g43450.1				GO:0003743 - translation initiation factor activity, GO:0005674 - transcription factor TFIIF complex, GO:0005524 - ATP binding, GO:0006367 - transcription initiation from RNA polymerase II promoter		
18688	_	OsTFIIF2-2, OsRAP30-2	_	OsTFIIF2-2 of Pol II, OsTFIIF2-2 of RNA polymerase II			1	TFIIF2 ortholog. the counterpart of RPA34.5 in Pol II.		Os01g0772200	LOC_Os01g56550.1, LOC_Os01g56550.2, LOC_Os01g56550.3				GO:0005674 - transcription factor TFIIF complex, GO:0005524 - ATP binding, GO:0006367 - transcription initiation from RNA polymerase II promoter		
18689	DGS1	OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1	DUPLICATED GAMETOPHYTIC STERILITY 1 	RPC53 of Pol III complex, RPC53 of RNA polymerase III, DNA-dependent RNA polymerase (RNAP) III subunit C4, RNA polymerase III subunit C53	DNA-DEPENDENT RNA POLYMERASE III SUBUNIT C4 		4	an RPC53 ortholog. the counterpart of RPA34.5 in Pol III. AB758279 (Oryza sativa), AB758280 (Oryza nirvara). predicted target of miR27874.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0394500	LOC_Os04g32350.1				GO:0003677 - DNA binding, GO:0005666 - DNA-directed RNA polymerase III complex, GO:0006383 - transcription from RNA polymerase III promoter	TO:0000053 - pollen sterility	PO:0009066 - anther 
18690	_	SAD1L	_	SAD1LIKE			1			Os01g0259900	LOC_Os01g15520.1						
18691	_	OsRPA49	_	Pol I subunit RPA49, RNA polymerase II subunit RPA49			11	the rice ortholog of RPA49.		Os11g0615100	LOC_Os11g40090.1, LOC_Os11g40090.2				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003899 - DNA-directed RNA polymerase activity, GO:0006351 - transcription, DNA-dependent		
18692	MED7	OsMED7, OsMed7_1, Med7_1	MEDIATOR COMPLEX PROTEIN 7	Mediator complex protein OsMED7, Mediator 7_1, COMPONENT OF THE MIDDLE MODULE OF THE MEDIATOR COMPLEX	MEDIATOR COMPLEX PROTEIN 7		4	GO:0001104: RNA polymerase II transcription cofactor activity. OsMed7_1 in Malik et al. 2016.	 Other	Os04g0661800	LOC_Os04g56640.1, LOC_Os04g56640.2, LOC_Os04g56640.3				GO:0003712 - transcription cofactor activity, GO:0016592 - mediator complex, GO:0070847 - core mediator complex, GO:0006357 - regulation of transcription from RNA polymerase II promoter		
18693	_	OsMED21, MED21, OsMed21_1, Med21_1	_	Mediator complex protein OsMED21, Mediator 21_1			8	OsMed21_1 in Malik et al. 2016. LOC_Os08g04150.	 Other	Os08g0135600	LOC_Os08g04150.1				GO:0016592 - mediator complex, GO:0050832 - defense response to fungus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
18694	_	OsMED6, MED6, OsMed6_1, Med6_1	_	Mediator complex protein OsMED6, Mediator 6_1			6	GO:0001104: RNA polymerase II transcription cofactor activity. LOC_Os06g11370. OsMed6_1 in Malik et al. 2016.	 Other	Os06g0217500	LOC_Os06g11370.1				GO:0016592 - mediator complex		
18695	_	OsMED9, MED9, OsMED9_1, MED9_1	_	Mediator complex protein OsMED9, Mediator 9_1			1	OsMED9_1 in Malik et al. 2016. LOC_Os01g31629.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os01g0501000	LOC_Os01g31629.1, LOC_Os01g31629.2, LOC_Os01g31629.3					TO:0000396 - grain yield, TO:0000382 - 1000-seed weight	
18696	_	OsMED10, MED10, OsMed10_1, Med10_1	_	Mediator complex protein OsMED10, Mediator 10_1			9	GO:0001104: RNA polymerase II transcription cofactor activity . OsMed10_1 in Malik et al. 2016. LOC_Os09g35920.	 Other	Os09g0528300	LOC_Os09g35920.1, LOC_Os09g35920.2				GO:0016592 - mediator complex		
18697	_	OsMED31a, MED31a, OsMed31_1, Med31_1	_	Mediator complex protein OsMED31a, Mediator 31_1			7	GO:0001104: RNA polymerase II transcription cofactor activity. OsMed31_1 in Malik et al. 2016. LOC_Os07g07020.	 Other	Os07g0164600	LOC_Os07g07020.1, LOC_Os07g07020.2				GO:0016592 - mediator complex		
18698	_	OsMED31b, MED31b, OsMed31_2, Med31_2	_	Mediator complex protein OsMED31b, Mediator 31_2			10	GO:0001104: RNA polymerase II transcription cofactor activity. LOC_Os10g41450. OsMed31_2 in Malik et al. 2016.	 Other	Os10g0564100	LOC_Os10g41450.1				GO:0016592 - mediator complex		
18699	_	OsMED19a	_	Mediator complex protein OsMED19a			12			Os12g0614000	LOC_Os12g41962.1, LOC_Os12g41962.2, LOC_Os12g41962.3, LOC_Os12g41962.4						
18700	_	OsMED19b, MED19b, OsMed19_1, Med19_1	_	Mediator complex protein OsMED19b, Mediator 19_1			3	OsMed19_1 in Malik et al. 2016. LOC_Os03g44010.		Os03g0641700	LOC_Os03g44010.1, LOC_Os03g44010.2						
18701	PETC	PetC, OsPETC	_	Rieske Fe-S precursor protein			7	Q69S39. GO:1900056: negative regulation of leaf senescence.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0556200	LOC_Os07g37030.1				GO:0009496 - plastoquinol-plastocyanin reductase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0000165 - MAPKKK cascade, GO:0031348 - negative regulation of defense response, GO:0009862 - systemic acquired resistance, salicylic acid mediated signaling pathway, GO:0009409 - response to cold, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009657 - plastid organization, GO:0010196 - nonphotochemical quenching, GO:0009767 - photosynthetic electron transport chain, GO:0006098 - pentose-phosphate shunt, GO:0009941 - chloroplast envelope, GO:0009512 - cytochrome b6f complex, GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, GO:0010207 - photosystem II assembly, GO:0005886 - plasma membrane, GO:0006612 - protein targeting to membrane, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0043900 - regulation of multi-organism process, GO:0009535 - chloroplast thylakoid membrane, GO:0010363 - regulation of plant-type hypersensitive response, GO:0010200 - response to chitin, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0006364 - rRNA processing, GO:0010150 - leaf senescence, GO:0009697 - salicylic acid biosynthetic process, GO:0009595 - detection of biotic stimulus, GO:0050832 - defense response to fungus, GO:0008121 - ubiquinol-cytochrome-c reductase activity, GO:0046028 - electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	TO:0000495 - chlorophyll content, TO:0000396 - grain yield, TO:0000249 - leaf senescence, TO:0000326 - leaf color, TO:0000031 - silicon sensitivity	
18702	_	Lhca6, OsLhca6	_	light-harvesting chlorophyll a/b-binding protein a6			9	LOC_Os09g26810.	 Biochemical character	Os09g0439500	LOC_Os09g26810.1				GO:0009523 - photosystem II, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016021 - integral to membrane, GO:0070838 - divalent metal ion transport, GO:0009522 - photosystem I, GO:0009507 - chloroplast, GO:0006364 - rRNA processing, GO:0016168 - chlorophyll binding, GO:0009744 - response to sucrose stimulus, GO:0009644 - response to high light intensity, GO:0010155 - regulation of proton transport, GO:0046872 - metal ion binding, GO:0030003 - cellular cation homeostasis, GO:0018298 - protein-chromophore linkage, GO:0009765 - photosynthesis, light harvesting, GO:0006098 - pentose-phosphate shunt, GO:0019761 - glucosinolate biosynthetic process		
18703	TPS44	OsTPS1, TPS1, OsTPS44	TERPENE SYNTHASE 44	terpene synthase 1	TERPENE SYNTHASE 44		1	TPS1 in Lee et al. 2014. TPS44 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os01g0337100	LOC_Os01g23530.1				GO:0010333 - terpene synthase activity, GO:0002213 - defense response to insect, GO:0016102 - diterpenoid biosynthetic process, GO:0000287 - magnesium ion binding	TO:0000454 - stem borer resistance, TO:0000261 - insect damage resistance	
18704	TPS2 	OsTPS2, TPS40, OsTPS40	TERPENE SYNTHASE 2	terpene synthase 2	TERPENE SYNTHASE 2		1	TPS40 in Sun et al. 2022.	 Biochemical character	Os01g0611800	LOC_Os01g42610.1						
18705	TPS3	OsTPS3, OsLIS, LIS, TPS22, OsTPS22	TERPENE SYNTHASE 33	terpene synthase 3, linalool synthase	TERPENE SYNTHASE 33	tps3, tps-4, tps3-12	2	Q6ZH94. TPS22 in Sun et al. 2022. GO:1900150: regulation of defense response to fungus. 	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os02g0121700	LOC_Os02g02930.1				GO:0009507 - chloroplast, GO:0050832 - defense response to fungus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0016114 - terpenoid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0010333 - terpene synthase activity, GO:0034007 - S-linalool synthase activity, GO:0051607 - defense response to virus, GO:0000287 - magnesium ion binding, GO:0016099 - monoterpenoid biosynthetic process, GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance, TO:0000148 - viral disease resistance, TO:0000386 - rice ragged stunt virus resistance, TO:0000454 - stem borer resistance, TO:0000074 - blast disease	
18706	_	OsTPS5, TPS5	_	terpene synthase 5			2	LOC_Os02g36020.	 Biochemical character	Os02g0568700	LOC_Os02g36020.1				GO:0010333 - terpene synthase activity, GO:0008152 - metabolic process, GO:0000287 - magnesium ion binding		
18707	_	OsTPS10, TPS10, TPS36, OsTPS36	_	terpene synthase 10			3	TPS36 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os03g0348200	LOC_Os03g22634.1				GO:0010333 - terpene synthase activity, GO:0002213 - defense response to insect, GO:0016102 - diterpenoid biosynthetic process, GO:0000287 - magnesium ion binding	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
18708	_	OsTPS11, TPS11, TPS28, OsTPS28	_	terpene synthase 11			3	OsTPS11 in Lee et al. 2014. TPS28  in Sun et al. 2022.	 Biochemical character	Os03g0361100	LOC_Os03g24640.1				GO:0000287 - magnesium ion binding, GO:0010333 - terpene synthase activity, GO:0016102 - diterpenoid biosynthetic process		
18709	TPS12	OsTPS12, TPS34, OsTPS34	TERPENE SYNTHASE 12	terpene synthase 12	TERPENE SYNTHASE 12		3	TPS34 in Sun et al. 2022.	 Biochemical character	Os03g0361600	LOC_Os03g24680.1				GO:0016102 - diterpenoid biosynthetic process, GO:0000287 - magnesium ion binding, GO:0010333 - terpene synthase activity		
18710	_	OsTPS13, TPS13, TPS3, OsTPS3	_	terpene synthase 13	_		3	TPS3 in Sun et al. 2022.	 Biochemical character	Os03g0361700	LOC_Os03g24690.1				GO:0000287 - magnesium ion binding, GO:0016114 - terpenoid biosynthetic process, GO:0010333 - terpene synthase activity		
18711	TPS14	OsTPS14, TPS12, OsTPS12	TERPENE SYNTHASE 14	terpene synthase 14	TERPENE SYNTHASE 14		3	TPS12 in Sun et al. 2022.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os03g0428200	LOC_Os03g31430.1				GO:0010333 - terpene synthase activity, GO:0002213 - defense response to insect, GO:0000287 - magnesium ion binding	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
18713	TPS17	OsTPS17, TPS32, OsTPS32	TERPENE SYNTHASE 17	terpene synthase 17	TERPENE SYNTHASE 17		4	TPS32 in Sun et al. 2022.	 Biochemical character	Os04g0338400	LOC_Os04g26960.1				GO:0000287 - magnesium ion binding		
18714	TPS18	OsTPS18, TPS23, OsTPS23	TERPENE SYNTHASE 18	terpene synthase 18	TERPENE SYNTHASE 18		4	TPS23 in Sun et al. 2022.	 Biochemical character	Os04g0339500	LOC_Os04g27070.1				GO:0000287 - magnesium ion binding, GO:0010333 - terpene synthase activity		
18715	TPS19	OsTPS19, TPS15, OsTPS15	TERPENE SYNTHASE 19	terpene synthase 19	TERPENE SYNTHASE 19		4	OsTPS19 has a highly homologous paralog, OsTPS20 (Chen et al. 2018). GO:1900150: regulation of defense response to fungus. TPS15 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os04g0340300	LOC_Os04g27190.1, LOC_Os04g27190.2, LOC_Os04g27190.3				GO:0000287 - magnesium ion binding, GO:0050832 - defense response to fungus, GO:0043693 - monoterpene biosynthetic process, GO:0010334 - sesquiterpene synthase activity, GO:0051762 - sesquiterpene biosynthetic process, GO:0009536 - plastid, GO:0010333 - terpene synthase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0046250 - limonene biosynthetic process, GO:0002213 - defense response to insect	TO:0000172 - jasmonic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000454 - stem borer resistance, TO:0000261 - insect damage resistance	
18716	TPS20	OsTPS20, TPS41, OsTPS41	TERPENE SYNTHASE 20	terpene synthase 20	TERPENE SYNTHASE 20		4	TPS41 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0341500	LOC_Os04g27340.1				GO:0051762 - sesquiterpene biosynthetic process, GO:0010334 - sesquiterpene synthase activity, GO:0010333 - terpene synthase activity, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0009536 - plastid, GO:0006979 - response to oxidative stress, GO:0009628 - response to abiotic stimulus, GO:0043693 - monoterpene biosynthetic process, GO:0000287 - magnesium ion binding, GO:0046250 - limonene biosynthetic process	TO:0000168 - abiotic stress trait, TO:0000261 - insect damage resistance, TO:0002657 - oxidative stress, TO:0000454 - stem borer resistance, TO:0000175 - bacterial blight disease resistance, TO:0000424 - brown planthopper resistance	
18717	TPS21	OsTPS21, TPS1, OsTPS1	TERPENE SYNTHASE 21	terpene synthase 21	TERPENE SYNTHASE 21		4	TPS1 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os04g0341800	LOC_Os04g27400.1				GO:0000287 - magnesium ion binding, GO:0002213 - defense response to insect	TO:0000454 - stem borer resistance, TO:0000261 - insect damage resistance	
18718	TPS22	OsTPS22, TPS18, OsTPS18	TERPENE SYNTHASE 22	terpene synthase 22	TERPENE SYNTHASE 22		4	TPS18 in Sun et al. 2022.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os04g0342800	LOC_Os04g27540.1				GO:0002213 - defense response to insect, GO:0010333 - terpene synthase activity	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
18719	TPS23	OsTPS23, TPS19, OsTPS19	TERPENE SYNTHASE 23	terpene synthase 23	TERPENE SYNTHASE 23		4	TPS19 in Sun et al. 2022. 	 Biochemical character	Os04g0344400	LOC_Os04g27720.1				GO:0008152 - metabolic process, GO:0010333 - terpene synthase activity, GO:0000287 - magnesium ion binding		
18720	TPS24	OsTPS24	TERPENE SYNTHASE 24	terpene synthase 24	TERPENE SYNTHASE 24		4		 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os04g0345400	LOC_Os04g27790.1				GO:0000287 - magnesium ion binding, GO:0002213 - defense response to insect, GO:0009753 - response to jasmonic acid stimulus, GO:0010333 - terpene synthase activity, GO:0042742 - defense response to bacterium, GO:0009507 - chloroplast	TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000454 - stem borer resistance, TO:0000261 - insect damage resistance	
18721	_	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10, TPS7, OsTPS7	_	terpene synthase 31, sesquiterpene synthase			8	EU596452. TPS46 in Sun et al. 2017. TO:0006067: aphid resistance. OsTPS10 in Liang et al. 2017. TPS7 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os08g0168000	LOC_Os08g07100.1				GO:0002213 - defense response to insect, GO:0000287 - magnesium ion binding	TO:0000261 - insect damage resistance, TO:0000424 - brown planthopper resistance, TO:0000454 - stem borer resistance	
18722	RLCK1	OsRLCK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 1	Receptor-like Cytoplasmic Kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 1		1	LOC_Os01g01110			LOC_Os01g01110						
18723	RLCK2	OsRLCK2, rrsRLK	RECEPTOR-LIKE CYTOPLASMIC KINASE 2	Receptor-like Cytoplasmic Kinase 2, required for ROS-scavenging receptor-like kinase	RECEPTOR-LIKE CYTOPLASMIC KINASE 2		1	LOC_Os01g02290. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0113200	LOC_Os01g02290.1, LOC_Os01g02290.2				GO:0004674 - protein serine/threonine kinase activity, GO:0007031 - peroxisome organization, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
18724	RLCK3	OsRLCK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 3	Receptor-like Cytoplasmic Kinase 3	RECEPTOR-LIKE CYTOPLASMIC KINASE 3		1	LOC_Os01g02300	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Seed,  Tolerance and resistance - Stress tolerance	Os01g0113300	LOC_Os01g02300.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage 
18725	RLCK4	OsRLCK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 4	Receptor-like Cytoplasmic Kinase 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 4		1	LOC_Os01g02320		Os01g0113400	LOC_Os01g02320.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18726	RLCK5	OsRLCK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 5	Receptor-like Cytoplasmic Kinase 5	RECEPTOR-LIKE CYTOPLASMIC KINASE 5		1	GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0114100	LOC_Os01g02390.2, LOC_Os01g02390.1				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress	TO:0000605 - hydrogen peroxide content, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18727	RLCK6	OsRLCK6	RECEPTOR-LIKE CYTOPLASMIC KINASE 6	Receptor-like Cytoplasmic Kinase 6	RECEPTOR-LIKE CYTOPLASMIC KINASE 6		1	LOC_Os01g02400	 Tolerance and resistance - Stress tolerance,  Seed,  Reproductive organ - panicle	Os01g0114300	LOC_Os01g02400.1, LOC_Os01g02400.2, LOC_Os01g02400.3				GO:0005524 - ATP binding, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18728	RLCK7	OsRLCK7	RECEPTOR-LIKE CYTOPLASMIC KINASE 7	Receptor-like Cytoplasmic Kinase 7	RECEPTOR-LIKE CYTOPLASMIC KINASE 7		1			Os01g0114400/Os01g0114401/Os01g0114450	LOC_Os01g02410.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18729	RLCK8	OsRLCK8	RECEPTOR-LIKE CYTOPLASMIC KINASE 8	Receptor-like Cytoplasmic Kinase 8	RECEPTOR-LIKE CYTOPLASMIC KINASE 8		1	LOC_Os01g02430		Os01g0114600	LOC_Os01g02430.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18730	RLCK9	OsRLCK9	RECEPTOR-LIKE CYTOPLASMIC KINASE 9	Receptor-like Cytoplasmic Kinase 9	RECEPTOR-LIKE CYTOPLASMIC KINASE 9		1	LOC_Os01g02460		Os01g0114900	LOC_Os01g02460.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18731	RLCK10	OsRLCK10	RECEPTOR-LIKE CYTOPLASMIC KINASE 10	Receptor-like Cytoplasmic Kinase 10	RECEPTOR-LIKE CYTOPLASMIC KINASE 10		1		 Tolerance and resistance - Disease resistance	Os01g0115500/Os01g0115566	LOC_Os01g02550.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18732	RLCK11	OsRLCK11	RECEPTOR-LIKE CYTOPLASMIC KINASE 11	Receptor-like Cytoplasmic Kinase 11	RECEPTOR-LIKE CYTOPLASMIC KINASE 11		1	LOC_Os01g02560. XB21 interacting protein (XB21IP).	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os01g0115600	LOC_Os01g02560.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18733	RLCK13	OsRLCK13	RECEPTOR-LIKE CYTOPLASMIC KINASE 13	Receptor-like Cytoplasmic Kinase 13	RECEPTOR-LIKE CYTOPLASMIC KINASE 13		1	LOC_Os01g02680		Os01g0116200	LOC_Os01g02680.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18734	RLCK14	OsRLCK14	RECEPTOR-LIKE CYTOPLASMIC KINASE 14	Receptor-like Cytoplasmic Kinase 14	RECEPTOR-LIKE CYTOPLASMIC KINASE 14		1	LOC_Os01g02690		Os01g0116300	LOC_Os01g02690.1						
18735	RLCK15	OsRLCK15	RECEPTOR-LIKE CYTOPLASMIC KINASE 15	Receptor-like Cytoplasmic Kinase 15	RECEPTOR-LIKE CYTOPLASMIC KINASE 15		1	LOC_Os01g02760	 Tolerance and resistance - Disease resistance	Os01g0117000	LOC_Os01g02760.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
18736	RLCK16	OsRLCK16	RECEPTOR-LIKE CYTOPLASMIC KINASE 16	Receptor-like Cytoplasmic Kinase 16	RECEPTOR-LIKE CYTOPLASMIC KINASE 16		1	LOC_Os01g02780	 Tolerance and resistance - Disease resistance	Os01g0117200	LOC_Os01g02780.1				GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18737	RLCK17	OsRLCK17	RECEPTOR-LIKE CYTOPLASMIC KINASE 17	Receptor-like Cytoplasmic Kinase 17	RECEPTOR-LIKE CYTOPLASMIC KINASE 17		1		 Tolerance and resistance - Disease resistance	Os01g0117266/Os01g0117300	LOC_Os01g02790.1				GO:0030247 - polysaccharide binding, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance	
18738	RLCK18	OsRLCK18	RECEPTOR-LIKE CYTOPLASMIC KINASE 18	Receptor-like Cytoplasmic Kinase 18	RECEPTOR-LIKE CYTOPLASMIC KINASE 18		1	LOC_Os01g02800		Os01g0117400	LOC_Os01g02800.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18739	RLCK19	OsRLCK19	RECEPTOR-LIKE CYTOPLASMIC KINASE 19	Receptor-like Cytoplasmic Kinase 19	RECEPTOR-LIKE CYTOPLASMIC KINASE 19		1	LOC_Os01g03690	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0127700	LOC_Os01g03690.1				GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
18740	RLCK20	OsRLCK20	RECEPTOR-LIKE CYTOPLASMIC KINASE 20	Receptor-like Cytoplasmic Kinase 20	RECEPTOR-LIKE CYTOPLASMIC KINASE 20		1			Os01g0137200/Os01g0137250	LOC_Os01g04480.1				GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18741	RLCK21	OsRLCK21	RECEPTOR-LIKE CYTOPLASMIC KINASE 21	Receptor-like Cytoplasmic Kinase 21	RECEPTOR-LIKE CYTOPLASMIC KINASE 21		1			Os01g0137282/Os01g0137400	LOC_Os01g04490.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18742	RLCK22	OsRLCK22	RECEPTOR-LIKE CYTOPLASMIC KINASE 22	Receptor-like Cytoplasmic Kinase 22	RECEPTOR-LIKE CYTOPLASMIC KINASE 22		1	LOC_Os01g04520		Os01g0137500	LOC_Os01g04520.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18743	RLCK23	OsRLCK23	RECEPTOR-LIKE CYTOPLASMIC KINASE 23	Receptor-like Cytoplasmic Kinase 23	RECEPTOR-LIKE CYTOPLASMIC KINASE 23		1	LOC_Os01g04550	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0137950	LOC_Os01g04550.1				GO:0009409 - response to cold, GO:0050832 - defense response to fungus	TO:0000303 - cold tolerance, TO:0000074 - blast disease	
18744	RLCK24	OsRLCK24	RECEPTOR-LIKE CYTOPLASMIC KINASE 24	Receptor-like Cytoplasmic Kinase 24	RECEPTOR-LIKE CYTOPLASMIC KINASE 24		1	a rice ortholog of Arabidopsis EFR.		Os01g0152600/Os01g0152687	LOC_Os01g05940.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
18745	RLCK26	OsRLCK26	RECEPTOR-LIKE CYTOPLASMIC KINASE 26	Receptor-like Cytoplasmic Kinase 26	RECEPTOR-LIKE CYTOPLASMIC KINASE 26		1	LOC_Os01g10700			LOC_Os01g10700						
18746	RLCK27	OsRLCK27	RECEPTOR-LIKE CYTOPLASMIC KINASE 27	Receptor-like Cytoplasmic Kinase 27	RECEPTOR-LIKE CYTOPLASMIC KINASE 27		1	LOC_Os01g14510	 Tolerance and resistance - Stress tolerance	Os01g0247500	LOC_Os01g14510.1				GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18747	RLCK28	OsRLCK28	RECEPTOR-LIKE CYTOPLASMIC KINASE 28	Receptor-like Cytoplasmic Kinase 28	RECEPTOR-LIKE CYTOPLASMIC KINASE 28		1	LOC_Os01g15470	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os01g0259200	LOC_Os01g15470.1, LOC_Os01g15470.2, LOC_Os01g15470.3				GO:0010229 - inflorescence development, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18748	RLCK29	OsRLCK29	RECEPTOR-LIKE CYTOPLASMIC KINASE 29	Receptor-like Cytoplasmic Kinase 29	RECEPTOR-LIKE CYTOPLASMIC KINASE 29		1	LOC_Os01g16230		Os01g0267800	LOC_Os01g16230.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18749	RLCK30	OsRLCK30	RECEPTOR-LIKE CYTOPLASMIC KINASE 30	Receptor-like Cytoplasmic Kinase 30	RECEPTOR-LIKE CYTOPLASMIC KINASE 30		1	LOC_Os01g19160		Os01g0296000	LOC_Os01g19160.1, LOC_Os01g19160.2				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18750	RLCK31	OsRLCK31	RECEPTOR-LIKE CYTOPLASMIC KINASE 31	Receptor-like Cytoplasmic Kinase 31	RECEPTOR-LIKE CYTOPLASMIC KINASE 31		1	LOC_Os01g20880		Os01g0310500	LOC_Os01g20880.1, LOC_Os01g20890.1						
18751	RLCK34	OsRLCK34	RECEPTOR-LIKE CYTOPLASMIC KINASE 34	Receptor-like Cytoplasmic Kinase 34	RECEPTOR-LIKE CYTOPLASMIC KINASE 34		1	LOC_Os01g23970		Os01g0342200	LOC_Os01g23970.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18752	RLCK35	OsRLCK35	RECEPTOR-LIKE CYTOPLASMIC KINASE 35	Receptor-like Cytoplasmic Kinase 35	RECEPTOR-LIKE CYTOPLASMIC KINASE 35		1	LOC_Os01g26210		Os01g0364400	LOC_Os01g26210.1, LOC_Os01g26240.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding		
18753	RLCK36	OsRLCK36, Gnk2RLK-2, OsGnk2RLK-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 36	Receptor-like Cytoplasmic Kinase 36, GnK2 domain containing receptor-like kinase-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 36		1		 Biochemical character	Os01g0545500	LOC_Os01g36500.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane		PO:0000032 - tetrad of microspores 
18754	RLCK37	OsRLCK37, Gnk2-K1, OsGnk2-K1	RECEPTOR-LIKE CYTOPLASMIC KINASE 37	Receptor-like Cytoplasmic Kinase 37, GnK2 domain containing kinase-like	RECEPTOR-LIKE CYTOPLASMIC KINASE 37		1		 Biochemical character	Os01g0568800	LOC_Os01g38840.1, LOC_Os01g38850.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding		
18755	RLCK38	OsRLCK38	RECEPTOR-LIKE CYTOPLASMIC KINASE 38	Receptor-like Cytoplasmic Kinase 38	RECEPTOR-LIKE CYTOPLASMIC KINASE 38		1	LOC_Os01g39820		Os01g0580150	LOC_Os01g39820.1						
18756	RLCK39	OsRLCK39, OsUSP4, USP4	RECEPTOR-LIKE CYTOPLASMIC KINASE 39	Receptor-like Cytoplasmic Kinase 39, universal stress protein 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 39		1		 Seed,  Reproductive organ - panicle	Os01g0581400	LOC_Os01g39970.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006950 - response to stress, GO:0010229 - inflorescence development, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
18757	RLCK40	OsRLCK40, PTK1, OsPTK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 40	Receptor-like Cytoplasmic Kinase 40, Protein Tyrosine Kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 40		1	LOC_Os01g40590	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os01g0588500	LOC_Os01g40590.1				GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0006970 - response to osmotic stress, GO:0030912 - response to deep water, GO:0009408 - response to heat, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000524 - submergence tolerance, TO:0000095 - osmotic response sensitivity	PO:0001083 - inflorescence development stage , PO:0000003 - whole plant , PO:0009066 - anther , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0009030 - carpel 
18758	RLCK41	OsRLCK41	RECEPTOR-LIKE CYTOPLASMIC KINASE 41	Receptor-like Cytoplasmic Kinase 41	RECEPTOR-LIKE CYTOPLASMIC KINASE 41		1	LOC_Os01g41730	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0601200	LOC_Os01g41730.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
18759	RLCK42	OsRLCK42	RECEPTOR-LIKE CYTOPLASMIC KINASE 42	Receptor-like Cytoplasmic Kinase 42	RECEPTOR-LIKE CYTOPLASMIC KINASE 42		1	LOC_Os01g41870	 Tolerance and resistance - Stress tolerance	Os01g0602800	LOC_Os01g41870.1, LOC_Os01g41870.2				GO:0016772 - transferase activity, transferring phosphorus-containing groups, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18760	RLCK43	OsRLCK43, SDK4, OsSDK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 43	Receptor-like Cytoplasmic Kinase 43, S-Domain kinase-4	RECEPTOR-LIKE CYTOPLASMIC KINASE 43		1	GO:0106310: protein serine kinase activity.		Os01g0670300	LOC_Os01g48020.1				GO:0016020 - membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane		
18761	RLCK44	OsRLCK44	RECEPTOR-LIKE CYTOPLASMIC KINASE 44	Receptor-like Cytoplasmic Kinase 44	RECEPTOR-LIKE CYTOPLASMIC KINASE 44		1	LOC_Os01g57540		Os01g0784500	LOC_Os01g57540.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18762	RLCK45	OsRLCK45	RECEPTOR-LIKE CYTOPLASMIC KINASE 45	Receptor-like Cytoplasmic Kinase 45	RECEPTOR-LIKE CYTOPLASMIC KINASE 45		1	LOC_Os01g57940	 Reproductive organ - panicle,  Seed	Os01g0789200	LOC_Os01g57940.1				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009049 - inflorescence 
18763	RLCK46	OsRLCK46, OsMRLK5, MRLK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 46	Receptor-like Cytoplasmic Kinase 46, malectin/malectin-like receptor-like kinase 5	RECEPTOR-LIKE CYTOPLASMIC KINASE 46		1		 Seed,  Reproductive organ - panicle	Os01g0810600	LOC_Os01g59560.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18764	RLCK47	OsRLCK47	RECEPTOR-LIKE CYTOPLASMIC KINASE 47	Receptor-like Cytoplasmic Kinase 47	RECEPTOR-LIKE CYTOPLASMIC KINASE 47		1	LOC_Os01g60700	 Tolerance and resistance - Disease resistance	Os01g0822200	LOC_Os01g60700.1, LOC_Os01g60700.2				GO:0006914 - autophagy, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18765	RLCK48	OsRLCK48	RECEPTOR-LIKE CYTOPLASMIC KINASE 48	Receptor-like Cytoplasmic Kinase 48	RECEPTOR-LIKE CYTOPLASMIC KINASE 48		1	LOC_Os01g63280	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0852100	LOC_Os01g63280.1, LOC_Os01g63280.2, LOC_Os01g63280.3				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	
18766	RLCK49	OsRLCK49	RECEPTOR-LIKE CYTOPLASMIC KINASE 49	Receptor-like Cytoplasmic Kinase 49	RECEPTOR-LIKE CYTOPLASMIC KINASE 49		1	LOC_Os01g65940	 Tolerance and resistance - Disease resistance		LOC_Os01g65940				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18767	RLCK50	OsRLCK50, OsSPARK5, SPARK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 50	Receptor-like Cytoplasmic Kinase 50, SIMILAR PROTEIN TO ARK 5	RECEPTOR-LIKE CYTOPLASMIC KINASE 50		1			Os01g0883000	LOC_Os01g66020.1, LOC_Os01g66040.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18768	RLCK51	OsRLCK51, OsPSRK2, PSRK2, SDRLK-PSRK2, OsSDRLK-PSRK2	RECEPTOR-LIKE CYTOPLASMIC KINASE 51	Receptor-like Cytoplasmic Kinase 51, Plant Stature Related receptor-like Kinanse2, S-Domain receptor like kinase-PSRK2	RECEPTOR-LIKE CYTOPLASMIC KINASE 51		1		 Vegetative organ - Culm,  Biochemical character	Os01g0890100	LOC_Os01g66630.1				GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation, GO:0016020 - membrane	TO:0006036 - stem elongation, TO:0000166 - gibberellic acid sensitivity, TO:0000576 - stem length, TO:0000366 - reproductive growth time	PO:0025530 - reproductive shoot system development stage , PO:0007089 - stem elongation stage , PO:0009047 - stem , PO:0020141 - stem node , PO:0009046 - flower 
18769	RLCK52	OsRLCK52	RECEPTOR-LIKE CYTOPLASMIC KINASE 52	Receptor-like Cytoplasmic Kinase 52	RECEPTOR-LIKE CYTOPLASMIC KINASE 52		1	LOC_Os01g67340	 Tolerance and resistance - Disease resistance,  Seed,  Reproductive organ - panicle	Os01g0899000	LOC_Os01g67340.1, LOC_Os01g67340.2, LOC_Os01g67340.3				GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
18770	RLCK53	OsRLCK53	RECEPTOR-LIKE CYTOPLASMIC KINASE 53	Receptor-like Cytoplasmic Kinase 53	RECEPTOR-LIKE CYTOPLASMIC KINASE 53		1	LOC_Os01g70410	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0929200	LOC_Os01g70410.1, LOC_Os01g70410.2, LOC_Os01g70410.3				GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
18771	RLCK54	OsRLCK54	RECEPTOR-LIKE CYTOPLASMIC KINASE 54	Receptor-like Cytoplasmic Kinase 54	RECEPTOR-LIKE CYTOPLASMIC KINASE 54		1	LOC_Os01g70970		Os01g0935800	LOC_Os01g70970.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18772	RLCK56	OsRLCK56	RECEPTOR-LIKE CYTOPLASMIC KINASE 56	Receptor-like Cytoplasmic Kinase 56	RECEPTOR-LIKE CYTOPLASMIC KINASE 56		1	LOC_Os01g73370		Os01g0964400	LOC_Os01g73370.1, LOC_Os01g73390.1				GO:0005856 - cytoskeleton, GO:0005737 - cytoplasm, GO:0005524 - ATP binding		
18773	RLCK57	OsRLCK57	RECEPTOR-LIKE CYTOPLASMIC KINASE 57	Receptor-like Cytoplasmic Kinase 57	RECEPTOR-LIKE CYTOPLASMIC KINASE 57		1	LOC_Os01g74200. a rice homolog of AtBIK1.GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:1903409 reactive oxygen species biosynthetic process.	 Seed,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os01g0973500	LOC_Os01g74200.1				GO:0010200 - response to chitin, GO:0009742 - brassinosteroid mediated signaling, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0002237 - response to molecule of bacterial origin, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0032494 - response to peptidoglycan	TO:0000621 - inflorescence development trait, TO:0000346 - tiller number, TO:0000050 - inflorescence branching, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000074 - blast disease	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001083 - inflorescence development stage 
18774	RLCK58	OsRLCK58	RECEPTOR-LIKE CYTOPLASMIC KINASE 58	Receptor-like Cytoplasmic Kinase 58	RECEPTOR-LIKE CYTOPLASMIC KINASE 58		2	LOC_Os02g01730	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os02g0106900	LOC_Os02g01730.1				GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18775	RLCK59	OsRLCK59	RECEPTOR-LIKE CYTOPLASMIC KINASE 59	Receptor-like Cytoplasmic Kinase 59	RECEPTOR-LIKE CYTOPLASMIC KINASE 59		2	LOC_Os02g01800		Os02g0107700	LOC_Os02g01800.1						
18776	RLCK60	OsRLCK60	RECEPTOR-LIKE CYTOPLASMIC KINASE 60	Receptor-like Cytoplasmic Kinase 60	RECEPTOR-LIKE CYTOPLASMIC KINASE 60		2	LOC_Os02g02600	 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Seed,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os02g0118200	LOC_Os02g02600.1				GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage 
18777	RLCK61	OsRLCK61, OsUSP8, USP8	RECEPTOR-LIKE CYTOPLASMIC KINASE 61	Receptor-like Cytoplasmic Kinase 61, universal stress protein 8	RECEPTOR-LIKE CYTOPLASMIC KINASE 61		2		 Tolerance and resistance - Disease resistance	Os02g0152300	LOC_Os02g05820.1				GO:0042742 - defense response to bacterium, GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance	PO:0007041 - inflorescence emergence stage , PO:0007616 - flowering stage 
18778	RLCK62	OsRLCK62	RECEPTOR-LIKE CYTOPLASMIC KINASE 62	Receptor-like Cytoplasmic Kinase 62	RECEPTOR-LIKE CYTOPLASMIC KINASE 62		2	LOC_Os02g06160		Os02g0156000	LOC_Os02g06160.1						
18779	RLCK63	OsRLCK63	RECEPTOR-LIKE CYTOPLASMIC KINASE 63	Receptor-like Cytoplasmic Kinase 63	RECEPTOR-LIKE CYTOPLASMIC KINASE 63		2	LOC_Os02g06930	 Tolerance and resistance,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0165100	LOC_Os02g06930.1, LOC_Os02g06930.2, LOC_Os02g06930.3, LOC_Os02g06930.4				GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0048316 - seed development	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
18780	RLCK64	OsRLCK64	RECEPTOR-LIKE CYTOPLASMIC KINASE 64	Receptor-like Cytoplasmic Kinase 64	RECEPTOR-LIKE CYTOPLASMIC KINASE 64		2	LOC_Os02g09359		Os02g0186500	LOC_Os02g09359.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18781	RLCK65	OsRLCK65	RECEPTOR-LIKE CYTOPLASMIC KINASE 65	Receptor-like Cytoplasmic Kinase 65	RECEPTOR-LIKE CYTOPLASMIC KINASE 65		2	LOC_Os02g12030		Os02g0211800	LOC_Os02g12030.1						
18782	RLCK66	OsRLCK66	RECEPTOR-LIKE CYTOPLASMIC KINASE 66	Receptor-like Cytoplasmic Kinase 66	RECEPTOR-LIKE CYTOPLASMIC KINASE 66		2	LOC_Os02g12130	 Tolerance and resistance - Disease resistance	Os02g0212900	LOC_Os02g12130.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
18783	RLCK67	OsRLCK67	RECEPTOR-LIKE CYTOPLASMIC KINASE 67	Receptor-like Cytoplasmic Kinase 67	RECEPTOR-LIKE CYTOPLASMIC KINASE 67		2	LOC_Os02g12340		Os02g0214633	LOC_Os02g12340.1						
18784	RLCK68	OsRLCK68, OsUSP9, USP9	RECEPTOR-LIKE CYTOPLASMIC KINASE 68	Receptor-like Cytoplasmic Kinase 68, universal stress protein 9	RECEPTOR-LIKE CYTOPLASMIC KINASE 68		2			Os02g0218400	LOC_Os02g12660.1				GO:0006950 - response to stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root , PO:0009009 - plant embryo , PO:0005052 - plant callus 
18785	RLCK70	OsRLCK70	RECEPTOR-LIKE CYTOPLASMIC KINASE 70	Receptor-like Cytoplasmic Kinase 70	RECEPTOR-LIKE CYTOPLASMIC KINASE 70		2			Os02g0227900/Os02g0228000	LOC_Os02g13460.1						
18786	RLCK71	OsRLCK71	RECEPTOR-LIKE CYTOPLASMIC KINASE 71	Receptor-like Cytoplasmic Kinase 71	RECEPTOR-LIKE CYTOPLASMIC KINASE 71		2	LOC_Os02g16790		Os02g0267766	LOC_Os02g16790.1						
18787	RLCK72	OsRLCK72	RECEPTOR-LIKE CYTOPLASMIC KINASE 72	Receptor-like Cytoplasmic Kinase 72	RECEPTOR-LIKE CYTOPLASMIC KINASE 72		2	LOC_Os02g30900	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0513000	LOC_Os02g30900.1				GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
18788	RLCK73	OsRLCK73	RECEPTOR-LIKE CYTOPLASMIC KINASE 73	Receptor-like Cytoplasmic Kinase 73	RECEPTOR-LIKE CYTOPLASMIC KINASE 73		2	LOC_Os02g34430		Os02g0549200	LOC_Os02g34430.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18789	RLCK74	OsRLCK74	RECEPTOR-LIKE CYTOPLASMIC KINASE 74	Receptor-like Cytoplasmic Kinase 74	RECEPTOR-LIKE CYTOPLASMIC KINASE 74		2	LOC_Os02g35760	 Tolerance and resistance - Disease resistance	Os02g0565500	LOC_Os02g35760.1, LOC_Os02g35760.2				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0004713 - protein tyrosine kinase activity	TO:0000074 - blast disease	
18790	RLCK78	OsRLCK78	RECEPTOR-LIKE CYTOPLASMIC KINASE 78	Receptor-like Cytoplasmic Kinase 78	RECEPTOR-LIKE CYTOPLASMIC KINASE 78		2	LOC_Os02g42620	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os02g0639100	LOC_Os02g42620.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18791	RLCK79	OsRLCK79	RECEPTOR-LIKE CYTOPLASMIC KINASE 79	Receptor-like Cytoplasmic Kinase 79	RECEPTOR-LIKE CYTOPLASMIC KINASE 79		2	LOC_Os02g43290	 Reproductive organ - panicle,  Seed	Os02g0648100	LOC_Os02g43290.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
18792	RLCK80	OsRLCK80	RECEPTOR-LIKE CYTOPLASMIC KINASE 80	Receptor-like Cytoplasmic Kinase 80	RECEPTOR-LIKE CYTOPLASMIC KINASE 80		2	LOC_Os02g43430	 Tolerance and resistance - Disease resistance,  Seed,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Tolerance and resistance	Os02g0650500	LOC_Os02g43430.1				GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009049 - inflorescence 
18793	RLCK82	OsRLCK82	RECEPTOR-LIKE CYTOPLASMIC KINASE 82	Receptor-like Cytoplasmic Kinase 82	RECEPTOR-LIKE CYTOPLASMIC KINASE 82		2	LOC_Os02g44920	 Seed	Os02g0670100	LOC_Os02g44920.1				GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
18794	RLCK83	OsRLCK83	RECEPTOR-LIKE CYTOPLASMIC KINASE 83	Receptor-like Cytoplasmic Kinase 83	RECEPTOR-LIKE CYTOPLASMIC KINASE 83		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os02g0681700	LOC_Os02g45750.1				GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
18795	RLCK84	OsRLCK84	RECEPTOR-LIKE CYTOPLASMIC KINASE 84	Receptor-like Cytoplasmic Kinase 84	RECEPTOR-LIKE CYTOPLASMIC KINASE 84		2	LOC_Os02g53030		Os02g0769700	LOC_Os02g53030.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18796	RLCK85	OsRLCK85, OsER2, ER2	RECEPTOR-LIKE CYTOPLASMIC KINASE 85	Receptor-like Cytoplasmic Kinase 85, ERECTA 2, OsERECTA2	RECEPTOR-LIKE CYTOPLASMIC KINASE 85	oser2-wu, oser2, oser2-1, oser2-2, oser2-3	2	GO:2000241: regulation of reproductive process. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Seed,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os02g0777400	LOC_Os02g53720.1, LOC_Os02g53720.2				GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0048229 - gametophyte development, GO:0010229 - inflorescence development, GO:0022414 - reproductive process, GO:0009553 - embryo sac development, GO:0004674 - protein serine/threonine kinase activity, GO:0042127 - regulation of cell proliferation, GO:0009554 - megasporogenesis, GO:0001558 - regulation of cell growth, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0000358 - female sterility, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000180 - spikelet fertility, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000653 - seed development trait, TO:0000455 - seed set percent	PO:0020003 - plant ovule , PO:0009047 - stem , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009051 - spikelet , PO:0009029 - stamen , PO:0001083 - inflorescence development stage , PO:0028003 - gametophyte development stage , PO:0000084 - plant sperm cell , PO:0007041 - inflorescence emergence stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
18797	RLCK86	OsRLCK86, PTK2, OsPTK2	RECEPTOR-LIKE CYTOPLASMIC KINASE 86	Receptor-like Cytoplasmic Kinase 86, Protein Tyrosine Kinase 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 86		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed,  Reproductive organ - panicle,  Tolerance and resistance	Os02g0777800	LOC_Os02g53750.1, LOC_Os02g53750.2				GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0030912 - response to deep water, GO:0009408 - response to heat, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0050832 - defense response to fungus	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009010 - seed 
18798	RLCK87	OsRLCK87, OsUSP15, USP15	RECEPTOR-LIKE CYTOPLASMIC KINASE 87	Receptor-like Cytoplasmic Kinase 87, universal stress protein 15	RECEPTOR-LIKE CYTOPLASMIC KINASE 87		2		 Reproductive organ - panicle	Os02g0787200	LOC_Os02g54590.1				GO:0005524 - ATP binding, GO:0006950 - response to stress, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0007616 - flowering stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage 
18799	RLCK88	OsRLCK88	RECEPTOR-LIKE CYTOPLASMIC KINASE 88	Receptor-like Cytoplasmic Kinase 88	RECEPTOR-LIKE CYTOPLASMIC KINASE 88		2	LOC_Os02g57420	 Tolerance and resistance - Disease resistance	Os02g0819600	LOC_Os02g57420.1				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0004672 - protein kinase activity	TO:0000175 - bacterial blight disease resistance	
18800	RLCK89	OsRLCK89	RECEPTOR-LIKE CYTOPLASMIC KINASE 89	Receptor-like Cytoplasmic Kinase 89	RECEPTOR-LIKE CYTOPLASMIC KINASE 89		2	LOC_Os02g57440	 Tolerance and resistance - Disease resistance	Os02g0819900	LOC_Os02g57440.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0004672 - protein kinase activity	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18801	RLCK90	OsRLCK90	RECEPTOR-LIKE CYTOPLASMIC KINASE 90	Receptor-like Cytoplasmic Kinase 90	RECEPTOR-LIKE CYTOPLASMIC KINASE 90		2	LOC_Os02g57560	 Seed,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle	Os02g0821400	LOC_Os02g57560.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development	TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage 
18802	RLCK92	OsRLCK92	RECEPTOR-LIKE CYTOPLASMIC KINASE 92	Receptor-like Cytoplasmic Kinase 92	RECEPTOR-LIKE CYTOPLASMIC KINASE 92		2	LOC_Os02g58610		Os02g0833000	LOC_Os02g58610.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18803	RLCK94	OsRLCK94	RECEPTOR-LIKE CYTOPLASMIC KINASE 94	Receptor-like Cytoplasmic Kinase 94	RECEPTOR-LIKE CYTOPLASMIC KINASE 94		3	LOC_Os03g01410			LOC_Os03g01410				GO:0005524 - ATP binding		
18804	RLCK95	OsRLCK95	RECEPTOR-LIKE CYTOPLASMIC KINASE 95	Receptor-like Cytoplasmic Kinase 95	RECEPTOR-LIKE CYTOPLASMIC KINASE 95		3	LOC_Os03g02190	 Tolerance and resistance - Stress tolerance	Os03g0113000	LOC_Os03g02190.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18805	RLCK96	OsRLCK96	RECEPTOR-LIKE CYTOPLASMIC KINASE 96	Receptor-like Cytoplasmic Kinase 96	RECEPTOR-LIKE CYTOPLASMIC KINASE 96		3	LOC_Os03g03880	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance	Os03g0130900	LOC_Os03g03880.1				GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18806	RLCK97	OsRLCK97	RECEPTOR-LIKE CYTOPLASMIC KINASE 97	Receptor-like Cytoplasmic Kinase 97	RECEPTOR-LIKE CYTOPLASMIC KINASE 97		3	LOC_Os03g03890	 Tolerance and resistance	Os03g0131000	LOC_Os03g03890.1				GO:0009611 - response to wounding, GO:0004672 - protein kinase activity		
18807	RLCK98	OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1	RECEPTOR-LIKE CYTOPLASMIC KINASE 98	Receptor-like Cytoplasmic Kinase 98, BR-signaling kinase 1, brassinosteroid-signaling kinase 1, brassinosteroid-SIGNALING KINASE 1-1	RECEPTOR-LIKE CYTOPLASMIC KINASE 98		3	a rice ortholog of AtBSK.	 Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Seed	Os03g0132800	LOC_Os03g04050.1				GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0010224 - response to UV-B, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0009739 - response to gibberellin stimulus	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000653 - seed development trait, TO:0000303 - cold tolerance, TO:0000601 - UV-B light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000255 - sheath blight disease resistance	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18808	RLCK99	OsRLCK99	RECEPTOR-LIKE CYTOPLASMIC KINASE 99	Receptor-like Cytoplasmic Kinase 99	RECEPTOR-LIKE CYTOPLASMIC KINASE 99		3	LOC_Os03g05140		Os03g0145102	LOC_Os03g05140.1						
18809	RLCK100	OsRLCK100	RECEPTOR-LIKE CYTOPLASMIC KINASE 100	Receptor-like Cytoplasmic Kinase 100	RECEPTOR-LIKE CYTOPLASMIC KINASE 100		3	LOC_Os03g05470	 Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Seed,  Tolerance and resistance	Os03g0148700	LOC_Os03g05470.1				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed 
18810	RLCK101	OsRLCK101, PTK3, OsPTK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 101	Receptor-like Cytoplasmic Kinase 101, Protein Tyrosine Kinase 3	RECEPTOR-LIKE CYTOPLASMIC KINASE 101		3	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os03g0159100	LOC_Os03g06330.1				GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000172 - jasmonic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009006 - shoot system , PO:0009005 - root , PO:0020033 - coleoptile , PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0000025 - root tip 
18811	RLCK102	OsRLCK102	RECEPTOR-LIKE CYTOPLASMIC KINASE 102	Receptor-like Cytoplasmic Kinase 102	RECEPTOR-LIKE CYTOPLASMIC KINASE 102		3	LOC_Os03g07430	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os03g0170400	LOC_Os03g07430.1, LOC_Os03g07430.2, LOC_Os03g07430.3, LOC_Os03g07430.4, LOC_Os03g07430.5				GO:0010229 - inflorescence development, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18812	RLCK104	OsRLCK104	RECEPTOR-LIKE CYTOPLASMIC KINASE 104	Receptor-like Cytoplasmic Kinase 104	RECEPTOR-LIKE CYTOPLASMIC KINASE 104		3	LOC_Os03g12520		Os03g0226300	LOC_Os03g12520.1				GO:0005524 - ATP binding, GO:0004713 - protein tyrosine kinase activity		
18813	RLCK105	OsRLCK105, OsUSP16, USP16	RECEPTOR-LIKE CYTOPLASMIC KINASE 105	Receptor-like Cytoplasmic Kinase 105, universal stress protein 16	RECEPTOR-LIKE CYTOPLASMIC KINASE 105		3		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0241600	LOC_Os03g13820.1, LOC_Os03g13820.2				GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root , PO:0009009 - plant embryo , PO:0005052 - plant callus 
18814	RLCK106	OsRLCK106	RECEPTOR-LIKE CYTOPLASMIC KINASE 106	Receptor-like Cytoplasmic Kinase 106	RECEPTOR-LIKE CYTOPLASMIC KINASE 106		3	LOC_Os03g15770	 Tolerance and resistance - Stress tolerance	Os03g0264300	LOC_Os03g15770.1, LOC_Os03g15770.2, LOC_Os03g15770.3				GO:0005524 - ATP binding, GO:0010200 - response to chitin, GO:0009651 - response to salt stress, GO:0009595 - detection of biotic stimulus, GO:0009581 - detection of external stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0002237 - response to molecule of bacterial origin	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
18815	RLCK107	OsRLCK107	RECEPTOR-LIKE CYTOPLASMIC KINASE 107	Receptor-like Cytoplasmic Kinase 107	RECEPTOR-LIKE CYTOPLASMIC KINASE 107		3	LOC_Os03g16740. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:1903409 reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf	Os03g0274800	LOC_Os03g16740.1, LOC_Os03g16740.2				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0004674 - protein serine/threonine kinase activity, GO:0002237 - response to molecule of bacterial origin, GO:0032494 - response to peptidoglycan, GO:0010200 - response to chitin	TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle, TO:0000175 - bacterial blight disease resistance, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000445 - seed number	
18816	RLCK108	OsRLCK108	RECEPTOR-LIKE CYTOPLASMIC KINASE 108	Receptor-like Cytoplasmic Kinase 108	RECEPTOR-LIKE CYTOPLASMIC KINASE 108		3	LOC_Os03g17550	 Seed,  Reproductive organ - panicle	Os03g0283900	LOC_Os03g17550.1				GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0004672 - protein kinase activity	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
18817	BBS1	OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109, PTK4, PTK4/BBS1, OsPTK4	BILATERAL BLADE SENESCENCE 1	Receptor-like Cytoplasmic Kinase 109, bilateral blade senescence 1, Protein Tyrosine Kinase 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 109	bbs1	3	GO:0090391: granum assembly. PO:0030123: panicle inflorescence.	 Seed,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0364400	LOC_Os03g24930.1, LOC_Os03g24930.2				GO:0006970 - response to osmotic stress, GO:0010413 - glucuronoxylan metabolic process, GO:0007623 - circadian rhythm, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0010150 - leaf senescence, GO:0010229 - inflorescence development, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0045492 - xylan biosynthetic process, GO:0009658 - chloroplast organization, GO:0048316 - seed development, GO:0030912 - response to deep water	TO:0000346 - tiller number, TO:0001007 - coleoptile length, TO:0000249 - leaf senescence, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance, TO:0000095 - osmotic response sensitivity, TO:0000227 - root length, TO:0000207 - plant height, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000298 - chlorophyll ratio, TO:0000495 - chlorophyll content, TO:0000180 - spikelet fertility, TO:0000397 - grain size, TO:0000592 - 1000-dehulled grain weight	PO:0000025 - root tip , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0007632 - seed maturation stage , PO:0007010 - whole plant fruit ripening stage , PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0020033 - coleoptile , PO:0020104 - leaf sheath 
18818	RLCK110	OsRLCK110, PTK5, OsPTK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 110	Receptor-like Cytoplasmic Kinase 110, Protein Tyrosine Kinase 5	RECEPTOR-LIKE CYTOPLASMIC KINASE 110		3		 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os03g0407900	LOC_Os03g29410.1				GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0009408 - response to heat, GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence 
18819	RLCK113	OsRLCK113	RECEPTOR-LIKE CYTOPLASMIC KINASE 113	Receptor-like Cytoplasmic Kinase 113	RECEPTOR-LIKE CYTOPLASMIC KINASE 113		3	LOC_Os03g31260		Os03g0426300	LOC_Os03g31260.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18821	RLCK115	OsRLCK115	RECEPTOR-LIKE CYTOPLASMIC KINASE 115	Receptor-like Cytoplasmic Kinase 115	RECEPTOR-LIKE CYTOPLASMIC KINASE 115		3	LOC_Os03g51040		Os03g0719850	LOC_Os03g51040.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18822	RLCK116	OsRLCK116	RECEPTOR-LIKE CYTOPLASMIC KINASE 116	Receptor-like Cytoplasmic Kinase 116	RECEPTOR-LIKE CYTOPLASMIC KINASE 116		3	LOC_Os03g51060		Os03g0720166	LOC_Os03g51060.1						
18823	RLCK117	OsRLCK117	RECEPTOR-LIKE CYTOPLASMIC KINASE 117	Receptor-like Cytoplasmic Kinase 117	RECEPTOR-LIKE CYTOPLASMIC KINASE 117		3	LOC_Os03g56270	 Tolerance and resistance - Stress tolerance	Os03g0773700	LOC_Os03g56270.1, LOC_Os03g56270.2, LOC_Os03g56270.3				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18824	RLCK118	OsRLCK118	RECEPTOR-LIKE CYTOPLASMIC KINASE 118	Receptor-like Cytoplasmic Kinase 118	RECEPTOR-LIKE CYTOPLASMIC KINASE 118	osrlck118, osrlck118-1, osrlck118-2	3	LOC_Os03g60710. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:1903409 reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf	Os03g0821900	LOC_Os03g60710.1				GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0010200 - response to chitin, GO:0052033 - pathogen-associated molecular pattern dependent induction by symbiont of host innate immunity, GO:0032494 - response to peptidoglycan, GO:0050832 - defense response to fungus, GO:0043067 - regulation of programmed cell death, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0002237 - response to molecule of bacterial origin	TO:0000074 - blast disease, TO:0000050 - inflorescence branching, TO:0000175 - bacterial blight disease resistance, TO:0000206 - leaf angle, TO:0000445 - seed number, TO:0002677 - brassinosteroid sensitivity	
18825	RLCK119	OsRLCK119, OsBSK4, BSK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 119	Receptor-like Cytoplasmic Kinase 119, BR-signaling kinase 4, brassinosteroid-signaling kinase 4, brassinosteroid-SIGNALING KINASE 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 119		3	a rice ortholog of AtBSK.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0825300	LOC_Os03g61010.1				GO:0009739 - response to gibberellin stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0010224 - response to UV-B, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0004672 - protein kinase activity, GO:0009733 - response to auxin stimulus, GO:0005524 - ATP binding, GO:0009741 - response to brassinosteroid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000601 - UV-B light sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity	
18826	RLCK120	OsRLCK120	RECEPTOR-LIKE CYTOPLASMIC KINASE 120	Receptor-like Cytoplasmic Kinase 120	RECEPTOR-LIKE CYTOPLASMIC KINASE 120		3	LOC_Os03g61060	 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Reproductive organ - panicle,  Seed	Os03g0825800	LOC_Os03g61060.1, LOC_Os03g61060.2				GO:0004683 - calmodulin-dependent protein kinase activity, GO:0009697 - salicylic acid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0009627 - systemic acquired resistance, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0010229 - inflorescence development	TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001083 - inflorescence development stage 
18827	PWL1	RLCK121, OsRLCK121, SDK13, OsSDK13, OsPWL1	PREMATURE WITHERED LEAF 1	Receptor-like Cytoplasmic Kinase 121, S-Domain kinase-13	RECEPTOR-LIKE CYTOPLASMIC KINASE 121	pwl1, PWL1-Hap1	3	a G-type lectin receptor-like kinase. GO:1900055: regulation of leaf senescence. GO:1904821: chloroplast disassembly. GO:1902510: regulation of apoptotic DNA fragmentation.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os03g0838100	LOC_Os03g62180.1, LOC_Os03g62180.2, LOC_Os03g62180.3				GO:0009658 - chloroplast organization, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0043067 - regulation of programmed cell death, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0010150 - leaf senescence, GO:0009646 - response to absence of light, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0009863 - salicylic acid mediated signaling pathway, GO:0005524 - ATP binding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009408 - response to heat, GO:0048544 - recognition of pollen, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0006487 - protein amino acid N-linked glycosylation	TO:0002668 - jasmonic acid content, TO:0000249 - leaf senescence, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000203 - bacterial leaf streak disease resistance, TO:0000357 - growth and development trait, TO:0002715 - chloroplast development trait, TO:0000145 - internode length, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0000460 - light intensity sensitivity, TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000346 - tiller number, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000421 - pollen fertility, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
18828	RLCK122	OsRLCK122, OsUSP20, USP20	RECEPTOR-LIKE CYTOPLASMIC KINASE 122	Receptor-like Cytoplasmic Kinase 122, universal stress protein 20	RECEPTOR-LIKE CYTOPLASMIC KINASE 122		3		 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Seed,  Tolerance and resistance - Disease resistance	Os03g0839900	LOC_Os03g62340.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006950 - response to stress, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0009413 - response to flooding	TO:0000621 - inflorescence development trait, TO:0000524 - submergence tolerance, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0005052 - plant callus , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009009 - plant embryo , PO:0025034 - leaf 
18829	RLCK123	OsRLCK123	RECEPTOR-LIKE CYTOPLASMIC KINASE 123	Receptor-like Cytoplasmic Kinase 123	RECEPTOR-LIKE CYTOPLASMIC KINASE 123		3	LOC_Os03g62700	 Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os03g0844100	LOC_Os03g62700.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0004713 - protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0009611 - response to wounding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18830	RLCK124	OsRLCK124	RECEPTOR-LIKE CYTOPLASMIC KINASE 124	Receptor-like Cytoplasmic Kinase 124	RECEPTOR-LIKE CYTOPLASMIC KINASE 124		4	LOC_Os04g01860			LOC_Os04g01860						
18831	RLCK125	OsRLCK125	RECEPTOR-LIKE CYTOPLASMIC KINASE 125	Receptor-like Cytoplasmic Kinase 125	RECEPTOR-LIKE CYTOPLASMIC KINASE 125		4	LOC_Os04g01874		Os04g0109100	LOC_Os04g01874.1				GO:0004674 - protein serine/threonine kinase activity, GO:0030246 - carbohydrate binding, GO:0005524 - ATP binding		
18832	RLCK126	OsRLCK126	RECEPTOR-LIKE CYTOPLASMIC KINASE 126	Receptor-like Cytoplasmic Kinase 126	RECEPTOR-LIKE CYTOPLASMIC KINASE 126		4			Os04g0123700/Os04g0123750	LOC_Os04g03370.1						
18833	CTB4A	OsRLCK127, RLCK127, OsCTB4a, qCTB4-1	COLD TOLERANCE AT BOOTING STAGE 4A	Receptor-like Cytoplasmic Kinase 127, cold tolerance at booting stage 4a	RECEPTOR-LIKE CYTOPLASMIC KINASE 127	ctb4a	4	FJ693708.1. a conserved leucine-rich repeat receptor-like kinase. candidate gene for qSSR4.	 Tolerance and resistance - Stress tolerance	Os04g0132500	LOC_Os04g04330.1, LOC_Os04g04330.2				GO:0009986 - cell surface, GO:0009507 - chloroplast, GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0000371 - yield trait, TO:0000303 - cold tolerance, TO:0000483 - germinability at low temperature, TO:0000421 - pollen fertility, TO:0000180 - spikelet fertility	PO:0020104 - leaf sheath , PO:0025313 - tapetum , PO:0007014 - booting stage , PO:0007134 - sporophyte vegetative stage , PO:0008013 - anther vascular system 
18834	RLCK128	OsRLCK128	RECEPTOR-LIKE CYTOPLASMIC KINASE 128	Receptor-like Cytoplasmic Kinase 128	RECEPTOR-LIKE CYTOPLASMIC KINASE 128		4	LOC_Os04g04800		Os04g0135400	LOC_Os04g04800.1						
18835	RLCK129	OsRLCK129	RECEPTOR-LIKE CYTOPLASMIC KINASE 129	Receptor-like Cytoplasmic Kinase 129	RECEPTOR-LIKE CYTOPLASMIC KINASE 129		4	LOC_Os04g06210		Os04g0146167	LOC_Os04g06210.1						
18836	RLCK130	OsRLCK130	RECEPTOR-LIKE CYTOPLASMIC KINASE 130	Receptor-like Cytoplasmic Kinase 130	RECEPTOR-LIKE CYTOPLASMIC KINASE 130		4	LOC_Os04g06244		Os04g0146300	LOC_Os04g06244.1						
18837	RLCK131	OsRLCK131, SDRLK-23, OsSDRLK-23, SDRLK23, OsSDRLK23	RECEPTOR-LIKE CYTOPLASMIC KINASE 131	Receptor-like Cytoplasmic Kinase 131, S-Domain receptor like kinase-23	RECEPTOR-LIKE CYTOPLASMIC KINASE 131		4	GO:0106310: protein serine kinase activity. TO:0000770: bacterial blight disease resistance.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0155500	LOC_Os04g07200.1				GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000315 - bacterial disease resistance	
18838	RLCK132	OsRLCK132	RECEPTOR-LIKE CYTOPLASMIC KINASE 132	Receptor-like Cytoplasmic Kinase 132	RECEPTOR-LIKE CYTOPLASMIC KINASE 132		4	LOC_Os04g09770		Os04g0177000	LOC_Os04g09770.1						
18839	RLCK133	OsRLCK133	RECEPTOR-LIKE CYTOPLASMIC KINASE 133	Receptor-like Cytoplasmic Kinase 133	RECEPTOR-LIKE CYTOPLASMIC KINASE 133		4	LOC_Os04g12180			LOC_Os04g12180						
18840	BPH15	RLCK134, OsRLCK134, OsLecRK1, LecRK1, SDRLK-LecRK1, OsSDRLK-LecRK1, OslecRK, lecRK, Bph15, OsBph15, Bph15 (Qbp2), Qbp2, qBPH-4	BROWN PLANTHOPPER RESISTANCE 15	Receptor-like Cytoplasmic Kinase 134, Lectin Receptor Kinase 1, LECTIN RECEPTOR KINASE1, S-Domain receptor like kinase-LecRK1, lectin receptor-like kinase, lectin receptor kinase	RECEPTOR-LIKE CYTOPLASMIC KINASE 134	oslecrk1	4	KF748957-KF748964. Q7FAZ3. KC131131 (Indica). This brown planthopper resistant gene was introduced from O. officinalis in China. This gene is located on the short arm of chromosome 4 flanked by RFLP markers C820 and S11182. GO:0106310: protein serine kinase activity. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Insect resistance,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0201900	LOC_Os04g12540.1	GR:0061067			GO:0005524 - ATP binding, GO:0051707 - response to other organism, GO:0009845 - seed germination, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0007165 - signal transduction, GO:0009414 - response to water deprivation, GO:0030247 - polysaccharide binding, GO:0009625 - response to insect, GO:0004674 - protein serine/threonine kinase activity, GO:0030246 - carbohydrate binding, GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0016020 - membrane, GO:0002213 - defense response to insect, GO:0006468 - protein amino acid phosphorylation, GO:0006952 - defense response, GO:0016021 - integral to membrane, GO:0016310 - phosphorylation	TO:0000345 - seed viability, TO:0000019 - seedling height, TO:0000175 - bacterial blight disease resistance, TO:0000315 - bacterial disease resistance, TO:0000424 - brown planthopper resistance, TO:0000430 - germination rate, TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease	PO:0009006 - shoot system , PO:0025034 - leaf , PO:0007616 - flowering stage , PO:0009049 - inflorescence , PO:0007057 - 0 seed germination stage , PO:0020032 - plumule , PO:0020031 - radicle 
18841	RLCK135	OsRLCK135, OsLecRK3, LecRK3, SDRLK-LecRK3, OsSDRLK-LecRK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 135	Receptor-like Cytoplasmic Kinase 135, Lectin Receptor Kinase 3, S-Domain receptor like kinase-LecRK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 135	oslecrk3	4	KF748973-KF748980.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os04g0202500	LOC_Os04g12580.1				GO:0005886 - plasma membrane, GO:0009814 - defense response, incompatible interaction, GO:0004674 - protein serine/threonine kinase activity, GO:0016020 - membrane, GO:0002213 - defense response to insect, GO:0005524 - ATP binding	TO:0000424 - brown planthopper resistance, TO:0000019 - seedling height	PO:0009046 - flower , PO:0009005 - root 
18842	RLCK136	OsRLCK136, OsLecRK4, LecRK4, SDRLK-LecRK4, OsSDRLK-LecRK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 136	Receptor-like Cytoplasmic Kinase 136, Lectin Receptor Kinase 4, S-Domain receptor like kinase-LecRK4	RECEPTOR-LIKE CYTOPLASMIC KINASE 136		4	KF748981-KF748987.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os04g0202800	LOC_Os04g12600.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0009814 - defense response, incompatible interaction, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	PO:0009010 - seed , PO:0009046 - flower , PO:0009006 - shoot system 
18843	RLCK137	OsRLCK137	RECEPTOR-LIKE CYTOPLASMIC KINASE 137	Receptor-like Cytoplasmic Kinase 137	RECEPTOR-LIKE CYTOPLASMIC KINASE 137		4	LOC_Os04g13640		Os04g0213800	LOC_Os04g13640.1						
18844	RLCK138	OsRLCK138, SDK5, OsSDK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 138	Receptor-like Cytoplasmic Kinase 138, S-Domain kinase-5	RECEPTOR-LIKE CYTOPLASMIC KINASE 138		4	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0226600	LOC_Os04g15580.1				GO:0016020 - membrane, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation	TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0009046 - flower 
18845	RLCK139	OsRLCK139	RECEPTOR-LIKE CYTOPLASMIC KINASE 139	Receptor-like Cytoplasmic Kinase 139	RECEPTOR-LIKE CYTOPLASMIC KINASE 139		4	LOC_Os04g23620			LOC_Os04g23620						
18846	RLCK141	OsRLCK141	RECEPTOR-LIKE CYTOPLASMIC KINASE 141	Receptor-like Cytoplasmic Kinase 141	RECEPTOR-LIKE CYTOPLASMIC KINASE 141		4	LOC_Os04g29740		Os04g0366401	LOC_Os04g29740.1						
18848	RLCK144	OsRLCK144	RECEPTOR-LIKE CYTOPLASMIC KINASE 144	Receptor-like Cytoplasmic Kinase 144	RECEPTOR-LIKE CYTOPLASMIC KINASE 144		4			Os04g0369000/Os04g0369066	LOC_Os04g30030.1				GO:0005198 - structural molecule activity		
18849	RLCK145	OsRLCK145, OsJRL12, JRL12	RECEPTOR-LIKE CYTOPLASMIC KINASE 145	Receptor-like Cytoplasmic Kinase 145, Jacalin-related lectin 12	RECEPTOR-LIKE CYTOPLASMIC KINASE 145		4			Os04g0369100	LOC_Os04g30040.2				GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0030246 - carbohydrate binding, GO:0005524 - ATP binding		
18850	RLCK146	OsRLCK146	RECEPTOR-LIKE CYTOPLASMIC KINASE 146	Receptor-like Cytoplasmic Kinase 146	RECEPTOR-LIKE CYTOPLASMIC KINASE 146		4	LOC_Os04g30060		Os04g0369300	LOC_Os04g30060.1						
18851	RLCK148	OsRLCK148	RECEPTOR-LIKE CYTOPLASMIC KINASE 148	Receptor-like Cytoplasmic Kinase 148	RECEPTOR-LIKE CYTOPLASMIC KINASE 148		4	LOC_Os04g30270		Os04g0371200	LOC_Os04g30270.1						
18852	RLCK149	OsRLCK149	RECEPTOR-LIKE CYTOPLASMIC KINASE 149	Receptor-like Cytoplasmic Kinase 149	RECEPTOR-LIKE CYTOPLASMIC KINASE 149		4	LOC_Os04g32310	 Tolerance and resistance - Disease resistance	Os04g0393900	LOC_Os04g32310.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000074 - blast disease	
18853	RLCK150	OsRLCK150	RECEPTOR-LIKE CYTOPLASMIC KINASE 150	Receptor-like Cytoplasmic Kinase 150	RECEPTOR-LIKE CYTOPLASMIC KINASE 150		4	LOC_Os04g34300		Os04g0420300	LOC_Os04g34300.1						
18854	RLCK151	OsRLCK151	RECEPTOR-LIKE CYTOPLASMIC KINASE 151	Receptor-like Cytoplasmic Kinase 151	RECEPTOR-LIKE CYTOPLASMIC KINASE 151		4	LOC_Os04g35080	 Tolerance and resistance - Disease resistance,  Seed,  Reproductive organ - panicle	Os04g0430000	LOC_Os04g35080.1				GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000621 - inflorescence development trait	PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18855	RLCK152	OsRLCK152	RECEPTOR-LIKE CYTOPLASMIC KINASE 152	Receptor-like Cytoplasmic Kinase 152	RECEPTOR-LIKE CYTOPLASMIC KINASE 152		4	LOC_Os04g41310	 Reproductive organ - panicle,  Seed	Os04g0490500	LOC_Os04g41310.1, LOC_Os04g41310.2				GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18856	RLCK153	OsRLCK153	RECEPTOR-LIKE CYTOPLASMIC KINASE 153	Receptor-like Cytoplasmic Kinase 153	RECEPTOR-LIKE CYTOPLASMIC KINASE 153		4	LOC_Os04g42480	 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance	Os04g0503600	LOC_Os04g42480.1				GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
18857	RLCK154	OsRLCK154, STRK1, OsSTRK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 154	Receptor-like Cytoplasmic Kinase 154, salt tolerance receptor-like cytoplasmic kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 154		4	LOC_Os04g45730	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Seed	Os04g0540900	LOC_Os04g45730.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0042542 - response to hydrogen peroxide	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
18858	RLCK155	OsRLCK155	RECEPTOR-LIKE CYTOPLASMIC KINASE 155	Receptor-like Cytoplasmic Kinase 155	RECEPTOR-LIKE CYTOPLASMIC KINASE 155		4	LOC_Os04g45920	 Reproductive organ - panicle,  Seed	Os04g0543000	LOC_Os04g45920.1				GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18859	RLCK156	OsRLCK156	RECEPTOR-LIKE CYTOPLASMIC KINASE 156	Receptor-like Cytoplasmic Kinase 156	RECEPTOR-LIKE CYTOPLASMIC KINASE 156		4	LOC_Os04g46320	 Reproductive organ - panicle	Os04g0548400	LOC_Os04g46320.1				GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18860	RLCK157	OsRLCK157	RECEPTOR-LIKE CYTOPLASMIC KINASE 157	Receptor-like Cytoplasmic Kinase 157	RECEPTOR-LIKE CYTOPLASMIC KINASE 157		4	LOC_Os04g47620	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os04g0563900	LOC_Os04g47620.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18861	RLCK158	OsRLCK158	RECEPTOR-LIKE CYTOPLASMIC KINASE 158	Receptor-like Cytoplasmic Kinase 158	RECEPTOR-LIKE CYTOPLASMIC KINASE 158		4	LOC_Os04g49460	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os04g0584100	LOC_Os04g49460.1				GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18862	RLCK159	OsRLCK159, OsMRLK14, MRLK14	RECEPTOR-LIKE CYTOPLASMIC KINASE 159	Receptor-like Cytoplasmic Kinase 159, malectin/malectin-like receptor-like kinase 14	RECEPTOR-LIKE CYTOPLASMIC KINASE 159		4			Os04g0616200	LOC_Os04g52590.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18863	RLCK160	OsRLCK160, PTK6, OsPTK6	RECEPTOR-LIKE CYTOPLASMIC KINASE 160	Receptor-like Cytoplasmic Kinase 160, Protein Tyrosine Kinase 6	RECEPTOR-LIKE CYTOPLASMIC KINASE 160		4		 Tolerance and resistance,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os04g0619400	LOC_Os04g52840.1, LOC_Os04g52840.2				GO:0009611 - response to wounding, GO:0006970 - response to osmotic stress, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0030912 - response to deep water, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance, TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009066 - anther , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0009030 - carpel , PO:0001083 - inflorescence development stage 
18864	RLCK161	OsRLCK161, OsCrRLK1L9, CrRLK1L9, OsMRLK19, MRLK19, FLR8, OsFLR8	RECEPTOR-LIKE CYTOPLASMIC KINASE 161	Receptor-like Cytoplasmic Kinase 161, Catharanthus roseus receptor-like kinase1-like kinase 9, malectin/malectin-like receptor-like kinase 19, FERONIA-like receptor 8	RECEPTOR-LIKE CYTOPLASMIC KINASE 161		4		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0619600	LOC_Os04g52860.1				GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000074 - blast disease	
18865	RLCK162	OsRLCK162, SDK6, OsSDK6	RECEPTOR-LIKE CYTOPLASMIC KINASE 162	Receptor-like Cytoplasmic Kinase 162, S-Domain kinase-6	RECEPTOR-LIKE CYTOPLASMIC KINASE 162		4	GO:0106310: protein serine kinase activity.	 Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - panicle	Os04g0631800	LOC_Os04g53994.1				GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0016020 - membrane, GO:0006468 - protein amino acid phosphorylation	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease	PO:0009010 - seed , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18866	RLCK163	OsRLCK163, SDK7, OsSDK7	RECEPTOR-LIKE CYTOPLASMIC KINASE 163	Receptor-like Cytoplasmic Kinase 163, S-Domain kinase-7	RECEPTOR-LIKE CYTOPLASMIC KINASE 163		4	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed,  Reproductive organ - panicle	Os04g0632100	LOC_Os04g53998.1				GO:0005886 - plasma membrane, GO:0048316 - seed development, GO:0048544 - recognition of pollen, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0016020 - membrane	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000653 - seed development trait, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009046 - flower , PO:0009010 - seed 
18867	RLCK164	OsRLCK164, SDK14, OsSDK14	RECEPTOR-LIKE CYTOPLASMIC KINASE 164	Receptor-like Cytoplasmic Kinase 164, S-Domain kinase-14	RECEPTOR-LIKE CYTOPLASMIC KINASE 164		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0633600	LOC_Os04g54110.1				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen	TO:0000276 - drought tolerance	PO:0009046 - flower , PO:0025034 - leaf 
18868	RLCK165	OsRLCK165, SDK9, OsSDK9	RECEPTOR-LIKE CYTOPLASMIC KINASE 165	Receptor-like Cytoplasmic Kinase 165, S-Domain kinase-9	RECEPTOR-LIKE CYTOPLASMIC KINASE 165		4	GO:0106310: protein serine kinase activity.	 Biochemical character	Os04g0633800	LOC_Os04g54120.1				GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0006468 - protein amino acid phosphorylation		PO:0025121 - pollen sperm cell 
18869	RLCK166	OsRLCK166	RECEPTOR-LIKE CYTOPLASMIC KINASE 166	Receptor-like Cytoplasmic Kinase 166	RECEPTOR-LIKE CYTOPLASMIC KINASE 166		4		 Tolerance and resistance - Disease resistance,  Biochemical character,  Seed,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os04g0634500	LOC_Os04g54190.1, LOC_Os04g54190.2, LOC_Os04g54190.3				GO:0006468 - protein amino acid phosphorylation, GO:0009611 - response to wounding, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0009536 - plastid	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed 
18870	RLCK167	OsRLCK167	RECEPTOR-LIKE CYTOPLASMIC KINASE 167	Receptor-like Cytoplasmic Kinase 167	RECEPTOR-LIKE CYTOPLASMIC KINASE 167		4	LOC_Os04g56060	 Tolerance and resistance - Stress tolerance	Os04g0654600	LOC_Os04g56060.1				GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18871	RLCK168	OsRLCK168	RECEPTOR-LIKE CYTOPLASMIC KINASE 168	Receptor-like Cytoplasmic Kinase 168	RECEPTOR-LIKE CYTOPLASMIC KINASE 168		4		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed,  Reproductive organ - panicle,  Biochemical character	Os04g0655300	LOC_Os04g56110.1, LOC_Os04g56110.2, LOC_Os04g56110.3				GO:0048316 - seed development, GO:0016020 - membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0010229 - inflorescence development	TO:0000175 - bacterial blight disease resistance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage 
18872	RLCK169	OsRLCK169	RECEPTOR-LIKE CYTOPLASMIC KINASE 169	Receptor-like Cytoplasmic Kinase 169	RECEPTOR-LIKE CYTOPLASMIC KINASE 169		4	LOC_Os04g56120		Os04g0655400	LOC_Os04g56120.1						
18873	RLCK170	OsRLCK170	RECEPTOR-LIKE CYTOPLASMIC KINASE 170	Receptor-like Cytoplasmic Kinase 170	RECEPTOR-LIKE CYTOPLASMIC KINASE 170		4	LOC_Os04g56130			LOC_Os04g56130						
18874	RLCK171	OsRLCK171	RECEPTOR-LIKE CYTOPLASMIC KINASE 171	Receptor-like Cytoplasmic Kinase 171	RECEPTOR-LIKE CYTOPLASMIC KINASE 171		4	LOC_Os04g56360		Os04g0658700	LOC_Os04g56360.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18875	RLCK172	OsRLCK172	RECEPTOR-LIKE CYTOPLASMIC KINASE 172	Receptor-like Cytoplasmic Kinase 172	RECEPTOR-LIKE CYTOPLASMIC KINASE 172		4		 Tolerance and resistance - Disease resistance	Os04g0679200	LOC_Os04g58250.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18876	RLCK173	OsRLCK173, OsBSK3, BSK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 173	Receptor-like Cytoplasmic Kinase 173, BR-signaling kinase 3, brassinosteroid-signaling kinase 3, brassinosteroid-SIGNALING KINASE 3	RECEPTOR-LIKE CYTOPLASMIC KINASE 173	osbsk3	4	a rice ortholog of AtBSK. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os04g0684200	LOC_Os04g58750.4, LOC_Os04g58750.3, LOC_Os04g58750.2, LOC_Os04g58750.1				GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009739 - response to gibberellin stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0004672 - protein kinase activity, GO:0009733 - response to auxin stimulus, GO:0010224 - response to UV-B, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000621 - inflorescence development trait, TO:0000172 - jasmonic acid sensitivity, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000601 - UV-B light sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000397 - grain size, TO:0000017 - anatomy and morphology related trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18877	RLCK174	OsRLCK174	RECEPTOR-LIKE CYTOPLASMIC KINASE 174	Receptor-like Cytoplasmic Kinase 174	RECEPTOR-LIKE CYTOPLASMIC KINASE 174		4	LOC_Os04g58910	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Seed	Os04g0685900	LOC_Os04g58910.1				GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0016021 - integral to membrane	TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
18878	RLCK175	OsRLCK175, OsPERK5, PERK5	RECEPTOR-LIKE CYTOPLASMIC KINASE 175	Receptor-like Cytoplasmic Kinase 175, proline-rich extensin-like receptor kinase 5	RECEPTOR-LIKE CYTOPLASMIC KINASE 175		5	LOC_Os05g01040. Extensin family protein.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os05g0100700	LOC_Os05g01040.1, LOC_Os05g01040.2, LOC_Os05g01040.3, LOC_Os05g01040.4				GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0002677 - brassinosteroid sensitivity, TO:0000439 - fungal disease resistance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000166 - gibberellic acid sensitivity	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18879	RLCK177	OsRLCK177	RECEPTOR-LIKE CYTOPLASMIC KINASE 177	Receptor-like Cytoplasmic Kinase 177	RECEPTOR-LIKE CYTOPLASMIC KINASE 177		5	LOC_Os05g03460	 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os05g0125300	LOC_Os05g03460.1				GO:0005524 - ATP binding, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009049 - inflorescence 
18880	RLCK179	OsRLCK179, SDRLP-3, OsSDRLP-3, SDRLP3, OsSDRLP3	RECEPTOR-LIKE CYTOPLASMIC KINASE 179	Receptor-like Cytoplasmic Kinase 179, S-Domain receptor like protein-3	RECEPTOR-LIKE CYTOPLASMIC KINASE 179		5			Os05g0163500	LOC_Os05g07080.1				GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen		PO:0009010 - seed 
18881	RLCK180	OsRLCK180, SDRLP-9, OsSDRLP-9, SDRLP9, OsSDRLP9	RECEPTOR-LIKE CYTOPLASMIC KINASE 180	Receptor-like Cytoplasmic Kinase 180, S-Domain receptor like protein-9	RECEPTOR-LIKE CYTOPLASMIC KINASE 180		5		 Tolerance and resistance - Stress tolerance	Os05g0166900	LOC_Os05g07470.1				GO:0016021 - integral to membrane, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen	TO:0000524 - submergence tolerance	PO:0009005 - root 
18882	Z15	OsRLCK181, RLCK181, OsZ15	ZEBRA LEAF 15	Receptor-like Cytoplasmic Kinase 181, Zebra leaf 15	RECEPTOR-LIKE CYTOPLASMIC KINASE 181	z15	5		 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os05g0218400	LOC_Os05g12680.1				GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0048316 - seed development	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000653 - seed development trait, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage 
18883	RLCK182	OsRLCK182	RECEPTOR-LIKE CYTOPLASMIC KINASE 182	Receptor-like Cytoplasmic Kinase 182	RECEPTOR-LIKE CYTOPLASMIC KINASE 182		5	LOC_Os05g14030			LOC_Os05g14030						
18884	RLCK183	OsRLCK183, OsCrRLK1L2, CrRLK1L2, OsMRLK31, MRLK31, FLR4, OsFLR4	RECEPTOR-LIKE CYTOPLASMIC KINASE 183	Receptor-like Cytoplasmic Kinase 183, Catharanthus roseus receptor-like kinase1-like kinase 2, malectin/malectin-like receptor-like kinase 31, FERONIA-like receptor 4	RECEPTOR-LIKE CYTOPLASMIC KINASE 183		5		 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os05g0317900	LOC_Os05g25370.1				GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0005618 - cell wall, GO:0009611 - response to wounding, GO:0016020 - membrane, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0007623 - circadian rhythm, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
18885	RLCK184	OsRLCK184	RECEPTOR-LIKE CYTOPLASMIC KINASE 184	Receptor-like Cytoplasmic Kinase 184	RECEPTOR-LIKE CYTOPLASMIC KINASE 184		5	LOC_Os05g30820	 Tolerance and resistance - Stress tolerance	Os05g0371600	LOC_Os05g30820.1, LOC_Os05g30820.2				GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
18886	RLCK186	OsRLCK186	RECEPTOR-LIKE CYTOPLASMIC KINASE 186	Receptor-like Cytoplasmic Kinase 186	RECEPTOR-LIKE CYTOPLASMIC KINASE 186		5	LOC_Os05g32170	 Seed,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle	Os05g0387700	LOC_Os05g32170.1				GO:0050832 - defense response to fungus, GO:0005576 - extracellular region, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0048316 - seed development	TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
18887	RLCK187	OsRLCK187	RECEPTOR-LIKE CYTOPLASMIC KINASE 187	Receptor-like Cytoplasmic Kinase 187	RECEPTOR-LIKE CYTOPLASMIC KINASE 187		5	LOC_Os05g38010		Os05g0454300	LOC_Os05g38010.1						
18888	RLCK188	OsRLCK188	RECEPTOR-LIKE CYTOPLASMIC KINASE 188	Receptor-like Cytoplasmic Kinase 188	RECEPTOR-LIKE CYTOPLASMIC KINASE 188		5	LOC_Os05g38770		Os05g0463000	LOC_Os05g38770.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18889	RLCK189	OsRLCK189, OsSTA156	RECEPTOR-LIKE CYTOPLASMIC KINASE 189	Receptor-like Cytoplasmic Kinase 189	RECEPTOR-LIKE CYTOPLASMIC KINASE 189		5	LOC_Os05g41950. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle	Os05g0498900	LOC_Os05g41950.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0001083 - inflorescence development stage 
18890	RLCK190	OsRLCK190, OsMRLK39, MRLK39	RECEPTOR-LIKE CYTOPLASMIC KINASE 190	Receptor-like Cytoplasmic Kinase 190, malectin/malectin-like receptor-like kinase 39	RECEPTOR-LIKE CYTOPLASMIC KINASE 190		5			Os05g0525800	LOC_Os05g45000.1, LOC_Os05g45010.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18891	RLCK191	OsRLCK191	RECEPTOR-LIKE CYTOPLASMIC KINASE 191	Receptor-like Cytoplasmic Kinase 191	RECEPTOR-LIKE CYTOPLASMIC KINASE 191		5	TO:0020083: stem diameter.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0589700	LOC_Os05g51190.5, LOC_Os05g51190.4, LOC_Os05g51190.2, LOC_Os05g51190.3				GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0010229 - inflorescence development	TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000068 - lodging incidence, TO:0000175 - bacterial blight disease resistance, TO:0000339 - stem thickness, TO:0000621 - inflorescence development trait, TO:0000051 - stem strength, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
18892	RUPO	OsRLCK193, RLCK193, OsCrRLK1L13, CrRLK1L13, OsMRLK40, MRLK40, FLR9, OsFLR9	RUPTURED POLLEN TUBE	Receptor-like Cytoplasmic Kinase 193, Catharanthus roseus receptor-like kinase1-like kinase 13, malectin/malectin-like receptor-like kinase 40, FERONIA-like receptor 9	RECEPTOR-LIKE CYTOPLASMIC KINASE 193	rupo, rupo-sg1, rupo-sg2	6	GO:0090404: pollen tube tip.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - panicle	Os06g0126250	LOC_Os06g03610.1				GO:0031982 - vesicle, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0010229 - inflorescence development, GO:0005886 - plasma membrane, GO:0055075 - potassium ion homeostasis, GO:0043266 - regulation of potassium ion transport, GO:0080092 - regulation of pollen tube growth	TO:0000621 - inflorescence development trait, TO:0000609 - potassium content	PO:0025195 - pollen tube cell , PO:0025281 - pollen , PO:0009082 - spikelet floret , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0001017 - M germinated pollen stage 
18894	RLCK196	OsRLCK196	RECEPTOR-LIKE CYTOPLASMIC KINASE 196	Receptor-like Cytoplasmic Kinase 196	RECEPTOR-LIKE CYTOPLASMIC KINASE 196		6	LOC_Os06g05830		Os06g0151700	LOC_Os06g05830.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18895	RLCK198	OsRLCK198, SDRLK-37, OsSDRLK-37, SDRLK37, OsSDRLK37	RECEPTOR-LIKE CYTOPLASMIC KINASE 198	Receptor-like Cytoplasmic Kinase 198, S-Domain receptor like kinase-37	RECEPTOR-LIKE CYTOPLASMIC KINASE 198		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0165500	LOC_Os06g06960.1				GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009046 - flower , PO:0025034 - leaf , PO:0009010 - seed 
18896	RLCK199	OsRLCK199, LRRK1, OsLRRK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 199	Receptor-like Cytoplasmic Kinase 199, leaf rolling receptor-like cytoplasmic kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 199	lrrk1	6	TO:0006064: rolled leaf.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Tolerance and resistance	Os06g0166900	LOC_Os06g07070.1				GO:0004672 - protein kinase activity, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0048366 - leaf development, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding	TO:0000455 - seed set percent, TO:0000396 - grain yield, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000152 - panicle number, TO:0000655 - leaf development trait, TO:0000136 - relative water content, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem , PO:0001050 - leaf development stage , PO:0020104 - leaf sheath 
18897	RLCK200	OsRLCK200, PTK7, OsPTK7	RECEPTOR-LIKE CYTOPLASMIC KINASE 200	Receptor-like Cytoplasmic Kinase 200, Protein Tyrosine Kinase 7	RECEPTOR-LIKE CYTOPLASMIC KINASE 200		6	PO:0030123: panicle inflorescence.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0168800	LOC_Os06g07230.1				GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0009611 - response to wounding	TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0000025 - root tip , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0007632 - seed maturation stage , PO:0007010 - whole plant fruit ripening stage , PO:0020033 - coleoptile 
18898	RLCK201	OsRLCK201, OsUSP28, USP28	RECEPTOR-LIKE CYTOPLASMIC KINASE 201	Receptor-like Cytoplasmic Kinase 201, universal stress protein 28	RECEPTOR-LIKE CYTOPLASMIC KINASE 201		6		 Tolerance and resistance - Stress tolerance	Os06g0191900	LOC_Os06g09230.2				GO:0009413 - response to flooding, GO:0006950 - response to stress	TO:0000524 - submergence tolerance	
18899	RLCK202	OsRLCK202	RECEPTOR-LIKE CYTOPLASMIC KINASE 202	Receptor-like Cytoplasmic Kinase 202	RECEPTOR-LIKE CYTOPLASMIC KINASE 202		6	LOC_Os06g09860		Os06g0198900	LOC_Os06g09860.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane		
18900	RLCK203	OsRLCK203, PTK8, OsPTK8	RECEPTOR-LIKE CYTOPLASMIC KINASE 203	Receptor-like Cytoplasmic Kinase 203, Protein Tyrosine Kinase 8	RECEPTOR-LIKE CYTOPLASMIC KINASE 203		6	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed	Os06g0202900	LOC_Os06g10160.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0030912 - response to deep water, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance	PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0000025 - root tip , PO:0009005 - root , PO:0009049 - inflorescence , PO:0020033 - coleoptile , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed 
18901	RLCK204	OsRLCK204, OsER1, ER1	RECEPTOR-LIKE CYTOPLASMIC KINASE 204	Receptor-like Cytoplasmic Kinase 204, ERECTA 1, ERECTA1	RECEPTOR-LIKE CYTOPLASMIC KINASE 204	oser1, oser1-wu1, oser1-wu2, oser1-ka	6	a rice ortholog of Arabidopsis ERECTA. PO:0030123: panicle inflorescence. TO:0000847: panicle inflorescence morphology trait. TO:0000975: grain width.	 Seed,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - panicle	Os06g0203800	LOC_Os06g10230.1				GO:0048281 - inflorescence morphogenesis, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0001558 - regulation of cell growth, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0016021 - integral to membrane, GO:0042127 - regulation of cell proliferation, GO:0048316 - seed development, GO:0009690 - cytokinin metabolic process	TO:0000072 - awn length, TO:0000734 - grain length, TO:0000397 - grain size, TO:0002660 - cytokinin content, TO:0000456 - spikelet number, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000455 - seed set percent, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000276 - drought tolerance	PO:0009006 - shoot system , PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009047 - stem , PO:0025034 - leaf , PO:0009029 - stamen , PO:0001083 - inflorescence development stage 
18902	RLCK205	OsRLCK205, OsNRP9, NRP9	RECEPTOR-LIKE CYTOPLASMIC KINASE 205	Receptor-like Cytoplasmic Kinase 205, N-rich protein 9	RECEPTOR-LIKE CYTOPLASMIC KINASE 205		6				LOC_Os06g18810.1						
18903	RLCK206	OsRLCK206	RECEPTOR-LIKE CYTOPLASMIC KINASE 206	Receptor-like Cytoplasmic Kinase 206	RECEPTOR-LIKE CYTOPLASMIC KINASE 206		6		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0541600	LOC_Os06g34960.1, LOC_Os06g34970.1				GO:0007166 - cell surface receptor linked signal transduction, GO:0009409 - response to cold, GO:0006468 - protein amino acid phosphorylation, GO:0050832 - defense response to fungus, GO:0004672 - protein kinase activity	TO:0000303 - cold tolerance, TO:0000074 - blast disease	PO:0009030 - carpel , PO:0020094 - plant egg cell 
18904	RLCK208	OsRLCK208	RECEPTOR-LIKE CYTOPLASMIC KINASE 208	Receptor-like Cytoplasmic Kinase 208	RECEPTOR-LIKE CYTOPLASMIC KINASE 208		6	LOC_Os06g38100			LOC_Os06g38100						
18905	RLCK209	OsRLCK209, SDRLP-10, OsSDRLP-10, SDRLP10, OsSDRLP10	RECEPTOR-LIKE CYTOPLASMIC KINASE 209	Receptor-like Cytoplasmic Kinase 209, S-Domain receptor like protein-10	RECEPTOR-LIKE CYTOPLASMIC KINASE 209		6		 Biochemical character	Os06g0619200	LOC_Os06g41500.1				GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity		
18906	RLCK210	OsRLCK210	RECEPTOR-LIKE CYTOPLASMIC KINASE 210	Receptor-like Cytoplasmic Kinase 210	RECEPTOR-LIKE CYTOPLASMIC KINASE 210		6	LOC_Os06g44430		Os06g0654600	LOC_Os06g44430.1						
18907	RLCK211	OsRLCK211	RECEPTOR-LIKE CYTOPLASMIC KINASE 211	Receptor-like Cytoplasmic Kinase 211	RECEPTOR-LIKE CYTOPLASMIC KINASE 211		6	LOC_Os06g45280	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os06g0663200	LOC_Os06g45280.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding	TO:0000276 - drought tolerance	
18908	RLCK212	OsRLCK212	RECEPTOR-LIKE CYTOPLASMIC KINASE 212	Receptor-like Cytoplasmic Kinase 212	RECEPTOR-LIKE CYTOPLASMIC KINASE 212		6	LOC_Os06g45350	 Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Seed,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os06g0663900	LOC_Os06g45350.1, LOC_Os06g45350.2, LOC_Os06g45350.5				GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0009010 - seed , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18909	RLCK213	OsRLCK213	RECEPTOR-LIKE CYTOPLASMIC KINASE 213	Receptor-like Cytoplasmic Kinase 213	RECEPTOR-LIKE CYTOPLASMIC KINASE 213		6	LOC_Os06g46330	 Reproductive organ - panicle,  Seed	Os06g0676600	LOC_Os06g46330.1				GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
18910	RLCK214	OsRLCK214	RECEPTOR-LIKE CYTOPLASMIC KINASE 214	Receptor-like Cytoplasmic Kinase 214	RECEPTOR-LIKE CYTOPLASMIC KINASE 214		6	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0689600	LOC_Os06g47470.1				GO:0009413 - response to flooding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0016021 - integral to membrane	TO:0000255 - sheath blight disease resistance, TO:0000315 - bacterial disease resistance, TO:0000074 - blast disease, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root 
18911	RLCK215	OsRLCK215	RECEPTOR-LIKE CYTOPLASMIC KINASE 215	Receptor-like Cytoplasmic Kinase 215	RECEPTOR-LIKE CYTOPLASMIC KINASE 215		6		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os06g0690200	LOC_Os06g47530.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0030912 - response to deep water, GO:0004672 - protein kinase activity, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0007166 - cell surface receptor linked signal transduction	TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait	PO:0009005 - root , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18912	RLCK216	OsRLCK216, OsRRK1, RRK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 216	Receptor-like Cytoplasmic Kinase 216, Rop-interacting receptor-like kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 216		6	LOC_Os06g47820. KY347802. an AtRRK1 homolog. TO:0000748: leaf morphology trait. TO:0000872: leaf erect. TO:0006064: rolled leaf.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance	Os06g0693200	LOC_Os06g47820.1				GO:0004674 - protein serine/threonine kinase activity, GO:0002213 - defense response to insect, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000180 - spikelet fertility, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000424 - brown planthopper resistance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
18913	RLCK217	OsRLCK217	RECEPTOR-LIKE CYTOPLASMIC KINASE 217	Receptor-like Cytoplasmic Kinase 217	RECEPTOR-LIKE CYTOPLASMIC KINASE 217		6	LOC_Os06g48980		Os06g0703000	LOC_Os06g48980.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18914	RLCK218	OsRLCK218	RECEPTOR-LIKE CYTOPLASMIC KINASE 218	Receptor-like Cytoplasmic Kinase 218	RECEPTOR-LIKE CYTOPLASMIC KINASE 218		6	LOC_Os06g50100	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os06g0714900	LOC_Os06g50100.1				GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18915	RLCK220	OsRLCK220	RECEPTOR-LIKE CYTOPLASMIC KINASE 220	Receptor-like Cytoplasmic Kinase 220	RECEPTOR-LIKE CYTOPLASMIC KINASE 220		6	LOC_Os06g51170	 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0727400	LOC_Os06g51170.1				GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001083 - inflorescence development stage 
18916	RLCK221	OsRLCK221	RECEPTOR-LIKE CYTOPLASMIC KINASE 221	Receptor-like Cytoplasmic Kinase 221	RECEPTOR-LIKE CYTOPLASMIC KINASE 221		7	LOC_Os07g03860			LOC_Os07g03860						
18917	RLCK222	OsRLCK222	RECEPTOR-LIKE CYTOPLASMIC KINASE 222	Receptor-like Cytoplasmic Kinase 222	RECEPTOR-LIKE CYTOPLASMIC KINASE 222		7	a rice ortholog of Arabidopsis BAM3.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance	Os07g0134200	LOC_Os07g04190.1				GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
18918	RLCK223	OsRLCK223	RECEPTOR-LIKE CYTOPLASMIC KINASE 223	Receptor-like Cytoplasmic Kinase 223	RECEPTOR-LIKE CYTOPLASMIC KINASE 223		7	LOC_Os07g06570	 Tolerance and resistance - Stress tolerance	Os07g0159700	LOC_Os07g06570.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18919	RLCK224	OsRLCK224	RECEPTOR-LIKE CYTOPLASMIC KINASE 224	Receptor-like Cytoplasmic Kinase 224	RECEPTOR-LIKE CYTOPLASMIC KINASE 224		7	LOC_Os07g07390		Os07g0169300	LOC_Os07g07390.1						
18921	RLCK226	OsRLCK226	RECEPTOR-LIKE CYTOPLASMIC KINASE 226	Receptor-like Cytoplasmic Kinase 226	RECEPTOR-LIKE CYTOPLASMIC KINASE 226		7	LOC_Os07g15930		Os07g0262600	LOC_Os07g15930.1						
18922	RLCK227	OsRLCK227	RECEPTOR-LIKE CYTOPLASMIC KINASE 227	Receptor-like Cytoplasmic Kinase 227	RECEPTOR-LIKE CYTOPLASMIC KINASE 227		7	LOC_Os07g26180		Os07g0443700	LOC_Os07g26170.1, LOC_Os07g26180.1						
18924	RLCK232	OsRLCK232, PTK9, OsPTK9	RECEPTOR-LIKE CYTOPLASMIC KINASE 232	Receptor-like Cytoplasmic Kinase 232, Protein Tyrosine Kinase 9	RECEPTOR-LIKE CYTOPLASMIC KINASE 232		7		 Tolerance and resistance - Stress tolerance	Os07g0495150	LOC_Os07g31290.1				GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity	
18925	RLCK233	OsRLCK233	RECEPTOR-LIKE CYTOPLASMIC KINASE 233	Receptor-like Cytoplasmic Kinase 233	RECEPTOR-LIKE CYTOPLASMIC KINASE 233		7		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0534500	LOC_Os07g34980.1				GO:0006468 - protein amino acid phosphorylation, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009046 - flower 
18926	RLCK234	OsRLCK234	RECEPTOR-LIKE CYTOPLASMIC KINASE 234	Receptor-like Cytoplasmic Kinase 234	RECEPTOR-LIKE CYTOPLASMIC KINASE 234		7	LOC_Os07g35280	 Tolerance and resistance - Disease resistance	Os07g0537200	LOC_Os07g35280.1				GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
18927	RLCK235	OsRLCK235	RECEPTOR-LIKE CYTOPLASMIC KINASE 235	Receptor-like Cytoplasmic Kinase 235	RECEPTOR-LIKE CYTOPLASMIC KINASE 235		7	LOC_Os07g35390	 Tolerance and resistance - Disease resistance	Os07g0538400	LOC_Os07g35390.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18928	RLCK236	OsRLCK236	RECEPTOR-LIKE CYTOPLASMIC KINASE 236	Receptor-like Cytoplasmic Kinase 236	RECEPTOR-LIKE CYTOPLASMIC KINASE 236		7	LOC_Os07g35630	 Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os07g0540500	LOC_Os07g35630.1				GO:0050832 - defense response to fungus, GO:0003676 - nucleic acid binding, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18929	RLCK237	OsRLCK237	RECEPTOR-LIKE CYTOPLASMIC KINASE 237	Receptor-like Cytoplasmic Kinase 237	RECEPTOR-LIKE CYTOPLASMIC KINASE 237		7	LOC_Os07g35730		Os07g0541700	LOC_Os07g35730.1, LOC_Os07g35730.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18930	RLCK238	OsRLCK238	RECEPTOR-LIKE CYTOPLASMIC KINASE 238	Receptor-like Cytoplasmic Kinase 238	RECEPTOR-LIKE CYTOPLASMIC KINASE 238		7	LOC_Os07g35770			LOC_Os07g35770						
18931	RLCK239	OsRLCK239	RECEPTOR-LIKE CYTOPLASMIC KINASE 239	Receptor-like Cytoplasmic Kinase 239	RECEPTOR-LIKE CYTOPLASMIC KINASE 239		7	LOC_Os07g36980		Os07g0555700	LOC_Os07g36980.1						
18932	RLCK240	OsRLCK240	RECEPTOR-LIKE CYTOPLASMIC KINASE 240	Receptor-like Cytoplasmic Kinase 240	RECEPTOR-LIKE CYTOPLASMIC KINASE 240		7	LOC_Os07g47270	 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0668900	LOC_Os07g47270.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0048316 - seed development	TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed 
18933	RLCK241	OsRLCK241, PTK11, OsPTK11	RECEPTOR-LIKE CYTOPLASMIC KINASE 241	Receptor-like Cytoplasmic Kinase 241, Protein Tyrosine Kinase 11	RECEPTOR-LIKE CYTOPLASMIC KINASE 241		7		 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0686800	LOC_Os07g48730.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0010229 - inflorescence development	TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity	PO:0001083 - inflorescence development stage , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009005 - root 
18934	RLCK242	OsRLCK242	RECEPTOR-LIKE CYTOPLASMIC KINASE 242	Receptor-like Cytoplasmic Kinase 242	RECEPTOR-LIKE CYTOPLASMIC KINASE 242		7	LOC_Os07g49240	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed	Os07g0693000	LOC_Os07g49240.1				GO:0004672 - protein kinase activity, GO:0048316 - seed development, GO:0016021 - integral to membrane, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
18935	RLCK243	OsRLCK243	RECEPTOR-LIKE CYTOPLASMIC KINASE 243	Receptor-like Cytoplasmic Kinase 243	RECEPTOR-LIKE CYTOPLASMIC KINASE 243		7	LOC_Os07g49470	 Seed,  Tolerance and resistance	Os07g0695300	LOC_Os07g49470.1				GO:0009611 - response to wounding, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane	TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
18936	RLCK244	OsRLCK244	RECEPTOR-LIKE CYTOPLASMIC KINASE 244	Receptor-like Cytoplasmic Kinase 244	RECEPTOR-LIKE CYTOPLASMIC KINASE 244		8	LOC_Os08g03040			LOC_Os08g03040						
18937	RLCK245	OsRLCK245, PTK12, OsPTK12	RECEPTOR-LIKE CYTOPLASMIC KINASE 245	Receptor-like Cytoplasmic Kinase 245, Protein Tyrosine Kinase 12	RECEPTOR-LIKE CYTOPLASMIC KINASE 245		8		 Tolerance and resistance - Stress tolerance	Os08g0138700	LOC_Os08g04420.1, LOC_Os08g04420.2				GO:0009737 - response to abscisic acid stimulus, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0007616 - flowering stage 
18938	RLCK247	OsRLCK247	RECEPTOR-LIKE CYTOPLASMIC KINASE 247	Receptor-like Cytoplasmic Kinase 247	RECEPTOR-LIKE CYTOPLASMIC KINASE 247		8	LOC_Os08g10070	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os08g0200500	LOC_Os08g10070.1, LOC_Os08g10070.2				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009611 - response to wounding	TO:0000074 - blast disease	
18939	RLCK248	OsRLCK248, SDRLP-5, OsSDRLP-5, SDRLP5, OsSDRLP5	RECEPTOR-LIKE CYTOPLASMIC KINASE 248	Receptor-like Cytoplasmic Kinase 248, S-Domain receptor like protein-5	RECEPTOR-LIKE CYTOPLASMIC KINASE 248		8		 Biochemical character	Os08g0236400	LOC_Os08g13870.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0048544 - recognition of pollen		PO:0025034 - leaf 
18940	RLCK249	OsRLCK249, OsUSP32, USP32	RECEPTOR-LIKE CYTOPLASMIC KINASE 249	Receptor-like Cytoplasmic Kinase 249, universal stress protein 32	RECEPTOR-LIKE CYTOPLASMIC KINASE 249		8		 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os08g0249100	LOC_Os08g15060.1				GO:0010229 - inflorescence development, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0002238 - response to molecule of fungal origin, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006950 - response to stress, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0005524 - ATP binding	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance	PO:0009009 - plant embryo , PO:0009005 - root , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18941	RLCK250	OsRLCK250	RECEPTOR-LIKE CYTOPLASMIC KINASE 250	Receptor-like Cytoplasmic Kinase 250	RECEPTOR-LIKE CYTOPLASMIC KINASE 250		8	LOC_Os08g24630	 Tolerance and resistance - Disease resistance		LOC_Os08g24630				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
18942	RLCK251	OsRLCK251	RECEPTOR-LIKE CYTOPLASMIC KINASE 251	Receptor-like Cytoplasmic Kinase 251	RECEPTOR-LIKE CYTOPLASMIC KINASE 251		8		 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0343000	LOC_Os08g25430.1, LOC_Os08g25430.2				GO:0007166 - cell surface receptor linked signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000524 - submergence tolerance	
18943	RLCK253	OsRLCK253	RECEPTOR-LIKE CYTOPLASMIC KINASE 253	Receptor-like Cytoplasmic Kinase 253	RECEPTOR-LIKE CYTOPLASMIC KINASE 253		8		 Tolerance and resistance - Stress tolerance	Os08g0374600/Os08g0374701	LOC_Os08g28710.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18944	RLCK254	OsRLCK254	RECEPTOR-LIKE CYTOPLASMIC KINASE 254	Receptor-like Cytoplasmic Kinase 254	RECEPTOR-LIKE CYTOPLASMIC KINASE 254		8		 Tolerance and resistance - Stress tolerance	Os08g0378300	LOC_Os08g29040.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
18945	RLCK255	OsRLCK255, PTK13, OsPTK13	RECEPTOR-LIKE CYTOPLASMIC KINASE 255	Receptor-like Cytoplasmic Kinase 255, Protein Tyrosine Kinase 13	RECEPTOR-LIKE CYTOPLASMIC KINASE 255		8		 Tolerance and resistance - Stress tolerance	Os08g0457400	LOC_Os08g35600.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0007616 - flowering stage , PO:0009030 - carpel , PO:0009066 - anther 
18946	RLCK256	OsRLCK256	RECEPTOR-LIKE CYTOPLASMIC KINASE 256	Receptor-like Cytoplasmic Kinase 256	RECEPTOR-LIKE CYTOPLASMIC KINASE 256		8	LOC_Os08g38560		Os08g0493800	LOC_Os08g38560.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
18947	RLCK257	OsRLCK257	RECEPTOR-LIKE CYTOPLASMIC KINASE 257	Receptor-like Cytoplasmic Kinase 257	RECEPTOR-LIKE CYTOPLASMIC KINASE 257		8	LOC_Os08g39590	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed	Os08g0506400	LOC_Os08g39590.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
18948	RLCK258	OsRLCK258	RECEPTOR-LIKE CYTOPLASMIC KINASE 258	Receptor-like Cytoplasmic Kinase 258	RECEPTOR-LIKE CYTOPLASMIC KINASE 258		8	LOC_Os08g40990		Os08g0521200	LOC_Os08g40990.1				GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
18949	RLCK259	OsRLCK259	RECEPTOR-LIKE CYTOPLASMIC KINASE 259	Receptor-like Cytoplasmic Kinase 259	RECEPTOR-LIKE CYTOPLASMIC KINASE 259		9	LOC_Os09g03620	 Seed	Os09g0123300	LOC_Os09g03620.1				GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0009627 - systemic acquired resistance, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0031348 - negative regulation of defense response, GO:0009697 - salicylic acid biosynthetic process, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage 
18950	RLCK260	OsRLCK260	RECEPTOR-LIKE CYTOPLASMIC KINASE 260	Receptor-like Cytoplasmic Kinase 260	RECEPTOR-LIKE CYTOPLASMIC KINASE 260		9	LOC_Os09g12300			LOC_Os09g12300						
18951	RLCK261	OsRLCK261	RECEPTOR-LIKE CYTOPLASMIC KINASE 261	Receptor-like Cytoplasmic Kinase 261	RECEPTOR-LIKE CYTOPLASMIC KINASE 261		9			Os09g0325140/Os09g0325180	LOC_Os09g15580.1						
18952	RLCK262	OsRLCK262	RECEPTOR-LIKE CYTOPLASMIC KINASE 262	Receptor-like Cytoplasmic Kinase 262	RECEPTOR-LIKE CYTOPLASMIC KINASE 262		9	LOC_Os09g16590			LOC_Os09g16590						
18953	RLCK263	OsRLCK263	RECEPTOR-LIKE CYTOPLASMIC KINASE 263	Receptor-like Cytoplasmic Kinase 263	RECEPTOR-LIKE CYTOPLASMIC KINASE 263		9	LOC_Os09g17890		Os09g0348400	LOC_Os09g17880.1, LOC_Os09g17890.1						
18954	RLCK264	OsRLCK264, OsMRLK51, MRLK51	RECEPTOR-LIKE CYTOPLASMIC KINASE 264	Receptor-like Cytoplasmic Kinase 264, malectin/malectin-like receptor-like kinase 51	RECEPTOR-LIKE CYTOPLASMIC KINASE 264		9			Os09g0348600	LOC_Os09g17910.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18955	RLCK265	OsRLCK265, OsMRLK55, MRLK55	RECEPTOR-LIKE CYTOPLASMIC KINASE 265	Receptor-like Cytoplasmic Kinase 265, malectin/malectin-like receptor-like kinase 55	RECEPTOR-LIKE CYTOPLASMIC KINASE 265		9			Os09g0351700/Os09g0351800	LOC_Os09g18230.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18956	RLCK266	OsRLCK266, OsSIRK1, SIRK1, OsMRLK60, MRLK60	RECEPTOR-LIKE CYTOPLASMIC KINASE 266	Receptor-like Cytoplasmic Kinase 266, malectin/malectin-like receptor-like kinase 60	RECEPTOR-LIKE CYTOPLASMIC KINASE 266		9	a leucine-rich-repeat (LRR) receptor-like protein kinase.	 Tolerance and resistance - Disease resistance	Os09g0356000	LOC_Os09g19140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18957	RLCK267	OsRLCK267, OsRPK1, RPK1, OsMRLP15, MRLP15	RECEPTOR-LIKE CYTOPLASMIC KINASE 267	Receptor-like Cytoplasmic Kinase 267, receptor protein kinase 1, malectin/malectin-like receptor-like protein 15	RECEPTOR-LIKE CYTOPLASMIC KINASE 267		9	Os09g0358400 in RAP3 (RapDB build 5). 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance		LOC_Os09g19380.1				GO:0009739 - response to gibberellin stimulus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
18958	RLCK269	OsRLCK269, CSK1, OsCSK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 269	Receptor-like Cytoplasmic Kinase 269, Cellulose Synthase co-expressed Kinase1, Cellulose Synthase co-expressed Kinase 1	RECEPTOR-LIKE CYTOPLASMIC KINASE 269	csk1	9	GO:1901347: negative regulation of secondary cell wall biogenesis.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity	Os09g0375600	LOC_Os09g20880.1, LOC_Os09g20880.2				GO:0001558 - regulation of cell growth, GO:0016926 - protein desumoylation, GO:0045492 - xylan biosynthetic process, GO:0004674 - protein serine/threonine kinase activity, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009834 - secondary cell wall biogenesis, GO:0040008 - regulation of growth, GO:0005634 - nucleus, GO:0006950 - response to stress, GO:0005737 - cytoplasm, GO:0009738 - abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0010228 - vegetative to reproductive phase transition, GO:0010413 - glucuronoxylan metabolic process	TO:0000168 - abiotic stress trait, TO:0000357 - growth and development trait	
18959	RLCK270	OsRLCK270	RECEPTOR-LIKE CYTOPLASMIC KINASE 270	Receptor-like Cytoplasmic Kinase 270	RECEPTOR-LIKE CYTOPLASMIC KINASE 270		9	LOC_Os09g24330		Os09g0408900	LOC_Os09g24330.1						
18960	RLCK271	OsRLCK271	RECEPTOR-LIKE CYTOPLASMIC KINASE 271	Receptor-like Cytoplasmic Kinase 271	RECEPTOR-LIKE CYTOPLASMIC KINASE 271		9	LOC_Os09g24340 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18961	RLCK272	OsRLCK272, PTK14, OsPTK14	RECEPTOR-LIKE CYTOPLASMIC KINASE 272	Receptor-like Cytoplasmic Kinase 272, Protein Tyrosine Kinase 14	RECEPTOR-LIKE CYTOPLASMIC KINASE 272		9		 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os09g0442100	LOC_Os09g27010.1				GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0030912 - response to deep water, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity	TO:0000621 - inflorescence development trait, TO:0000615 - abscisic acid sensitivity, TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009030 - carpel , PO:0007616 - flowering stage 
18962	RLCK275	OsRLCK275	RECEPTOR-LIKE CYTOPLASMIC KINASE 275	Receptor-like Cytoplasmic Kinase 275	RECEPTOR-LIKE CYTOPLASMIC KINASE 275		9	LOC_Os09g30190		Os09g0479200	LOC_Os09g30190.1						
18963	RLCK277	OsRLCK277	RECEPTOR-LIKE CYTOPLASMIC KINASE 277	Receptor-like Cytoplasmic Kinase 277	RECEPTOR-LIKE CYTOPLASMIC KINASE 277		9	LOC_Os09g33860	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os09g0513600	LOC_Os09g33860.1				GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
18964	RLCK279	OsRLCK279, SDRLK-46, OsSDRLK-46, SDRLK46, OsSDRLK46	RECEPTOR-LIKE CYTOPLASMIC KINASE 279	Receptor-like Cytoplasmic Kinase 279, S-Domain receptor like kinase-46	RECEPTOR-LIKE CYTOPLASMIC KINASE 279		9	GO:0106310: protein serine kinase activity.	 Biochemical character	Os09g0550600	LOC_Os09g37800.1				GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		PO:0025121 - pollen sperm cell 
18965	RLCK282	OsRLCK282	RECEPTOR-LIKE CYTOPLASMIC KINASE 282	Receptor-like Cytoplasmic Kinase 282	RECEPTOR-LIKE CYTOPLASMIC KINASE 282		9	LOC_Os09g39650	 Reproductive organ - panicle,  Seed,  Tolerance and resistance	Os09g0570100	LOC_Os09g39650.1, LOC_Os09g39650.2, LOC_Os09g39650.3				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18966	RLCK283	OsRLCK283	RECEPTOR-LIKE CYTOPLASMIC KINASE 283	Receptor-like Cytoplasmic Kinase 283	RECEPTOR-LIKE CYTOPLASMIC KINASE 283		9	LOC_Os09g39860	 Tolerance and resistance	Os09g0572100	LOC_Os09g39860.1				GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0004672 - protein kinase activity		
18967	RLCK288	OsRLCK288	RECEPTOR-LIKE CYTOPLASMIC KINASE 288	Receptor-like Cytoplasmic Kinase 288	RECEPTOR-LIKE CYTOPLASMIC KINASE 288		10	LOC_Os10g02990			LOC_Os10g02990				GO:0005524 - ATP binding		
18968	RLCK289	OsRLCK289	RECEPTOR-LIKE CYTOPLASMIC KINASE 289	Receptor-like Cytoplasmic Kinase 289	RECEPTOR-LIKE CYTOPLASMIC KINASE 289		10	LOC_Os10g03990 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18969	RLCK290	OsRLCK290	RECEPTOR-LIKE CYTOPLASMIC KINASE 290	Receptor-like Cytoplasmic Kinase 290	RECEPTOR-LIKE CYTOPLASMIC KINASE 290		10	LOC_Os10g05160	 Tolerance and resistance - Stress tolerance	Os10g0141200	LOC_Os10g05160.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
18970	RLCK294	OsRLCK294	RECEPTOR-LIKE CYTOPLASMIC KINASE 294	Receptor-like Cytoplasmic Kinase 294	RECEPTOR-LIKE CYTOPLASMIC KINASE 294		10	LOC_Os10g10870	 Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os10g0187500	LOC_Os10g10870.1				GO:0009611 - response to wounding, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
18971	RLCK295	OsRLCK295	RECEPTOR-LIKE CYTOPLASMIC KINASE 295	Receptor-like Cytoplasmic Kinase 295	RECEPTOR-LIKE CYTOPLASMIC KINASE 295		10	LOC_Os10g12620		Os10g0200000	LOC_Os10g12620.1				GO:0005524 - ATP binding, GO:0005198 - structural molecule activity, GO:0004674 - protein serine/threonine kinase activity		
18972	RLCK296	OsRLCK296	RECEPTOR-LIKE CYTOPLASMIC KINASE 296	Receptor-like Cytoplasmic Kinase 296	RECEPTOR-LIKE CYTOPLASMIC KINASE 296		10	LOC_Os10g18260			LOC_Os10g18260				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
18973	RLCK297	OsRLCK297	RECEPTOR-LIKE CYTOPLASMIC KINASE 297	Receptor-like Cytoplasmic Kinase 297	RECEPTOR-LIKE CYTOPLASMIC KINASE 297		10	LOC_Os10g24850		Os10g0387400	LOC_Os10g24850.1						
18974	RLCK298	OsRLCK298, PTK17, OsPTK17	RECEPTOR-LIKE CYTOPLASMIC KINASE 298	Receptor-like Cytoplasmic Kinase 298, Protein Tyrosine Kinase 17	RECEPTOR-LIKE CYTOPLASMIC KINASE 298		10	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Seed	Os10g0395000	LOC_Os10g25550.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus	TO:0000621 - inflorescence development trait, TO:0000172 - jasmonic acid sensitivity, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009049 - inflorescence , PO:0020033 - coleoptile , PO:0009005 - root , PO:0000025 - root tip , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0020103 - flag leaf 
18975	RLCK299	OsRLCK299	RECEPTOR-LIKE CYTOPLASMIC KINASE 299	Receptor-like Cytoplasmic Kinase 299	RECEPTOR-LIKE CYTOPLASMIC KINASE 299		10	LOC_Os10g26520	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os10g0405100	LOC_Os10g26520.1				GO:0048316 - seed development, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0009611 - response to wounding	TO:0000621 - inflorescence development trait, TO:0000074 - blast disease, TO:0000653 - seed development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed 
18976	RLCK300	OsRLCK300, PTK18, OsPTK18	RECEPTOR-LIKE CYTOPLASMIC KINASE 300	Receptor-like Cytoplasmic Kinase 300, Protein Tyrosine Kinase 18	RECEPTOR-LIKE CYTOPLASMIC KINASE 300		10	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed,  Reproductive organ - panicle	Os10g0431900	LOC_Os10g29620.1				GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0006970 - response to osmotic stress, GO:0030912 - response to deep water, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0048316 - seed development, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000653 - seed development trait, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance, TO:0000095 - osmotic response sensitivity	PO:0009006 - shoot system , PO:0000025 - root tip , PO:0009005 - root , PO:0020033 - coleoptile , PO:0009049 - inflorescence , PO:0007010 - whole plant fruit ripening stage , PO:0007632 - seed maturation stage , PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed 
18977	RLCK301	OsRLCK301	RECEPTOR-LIKE CYTOPLASMIC KINASE 301	Receptor-like Cytoplasmic Kinase 301	RECEPTOR-LIKE CYTOPLASMIC KINASE 301		10	LOC_Os10g30600	 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0442800	LOC_Os10g30600.1, LOC_Os10g30600.2				GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0048316 - seed development, GO:0004672 - protein kinase activity	TO:0000621 - inflorescence development trait, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
18978	RLCK302	OsRLCK302	RECEPTOR-LIKE CYTOPLASMIC KINASE 302	Receptor-like Cytoplasmic Kinase 302	RECEPTOR-LIKE CYTOPLASMIC KINASE 302		10	LOC_Os10g34220		Os10g0483400	LOC_Os10g34220.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18979	RLCK303	OsRLCK303	RECEPTOR-LIKE CYTOPLASMIC KINASE 303	Receptor-like Cytoplasmic Kinase 303	RECEPTOR-LIKE CYTOPLASMIC KINASE 303		10	LOC_Os10g37190	 Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os10g0516200	LOC_Os10g37190.1				GO:0004672 - protein kinase activity, GO:0009611 - response to wounding, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
18980	RLCK304	OsRLCK304, OsBSK1-2, BSK1-2, OsBSK1	RECEPTOR-LIKE CYTOPLASMIC KINASE 304	Receptor-like Cytoplasmic Kinase 304, brassinosteroid-SIGNALING KINASE 1-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 304		10		 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os10g0542800	LOC_Os10g39670.1				GO:0010224 - response to UV-B, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0050832 - defense response to fungus, GO:0002237 - response to molecule of bacterial origin, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0002238 - response to molecule of fungal origin	TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000601 - UV-B light sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
18981	RLCK308	OsRLCK308, OsBSK2, BSK2	RECEPTOR-LIKE CYTOPLASMIC KINASE 308	Receptor-like Cytoplasmic Kinase 308, BR-signaling kinase 2, brassinosteroid-signaling kinase 2, brassinosteroid-SIGNALING KINASE 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 308		10	a rice ortholog of AtBSK.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0571300	LOC_Os10g42110.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0004672 - protein kinase activity, GO:0009751 - response to salicylic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0050832 - defense response to fungus, GO:0009742 - brassinosteroid mediated signaling, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity	
18982	RLCK309	OsRLCK309	RECEPTOR-LIKE CYTOPLASMIC KINASE 309	Receptor-like Cytoplasmic Kinase 309	RECEPTOR-LIKE CYTOPLASMIC KINASE 309		11	LOC_Os11g02830		Os11g0121400	LOC_Os11g02830.1, LOC_Os11g02830.2				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
18983	RLCK310	OsRLCK310, LecRK, OsLecRK, SDK2, OsSDK2	RECEPTOR-LIKE CYTOPLASMIC KINASE 310	Receptor-like Cytoplasmic Kinase 310, lectin receptor protein kinase, S-Domain kinase-2	RECEPTOR-LIKE CYTOPLASMIC KINASE 310		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0133500	LOC_Os11g03880.1				GO:0004674 - protein serine/threonine kinase activity, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009651 - response to salt stress, GO:0048544 - recognition of pollen, GO:0005524 - ATP binding, GO:0009609 - response to symbiotic bacterium, GO:0030246 - carbohydrate binding	TO:0006001 - salt tolerance	PO:0009005 - root 
18984	RLCK311	OsRLCK311	RECEPTOR-LIKE CYTOPLASMIC KINASE 311	Receptor-like Cytoplasmic Kinase 311	RECEPTOR-LIKE CYTOPLASMIC KINASE 311		11	GO:1902457: negative regulation of stomatal opening. GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement.	 Reproductive organ - panicle,  Seed,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0168600	LOC_Os11g06780.1				GO:0005524 - ATP binding, GO:0048316 - seed development, GO:0010119 - regulation of stomatal movement, GO:0004672 - protein kinase activity, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0010229 - inflorescence development, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000522 - stomatal conductance, TO:0000175 - bacterial blight disease resistance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0001170 - seed development stage , PO:0009010 - seed 
18985	RLCK312	OsRLCK312	RECEPTOR-LIKE CYTOPLASMIC KINASE 312	Receptor-like Cytoplasmic Kinase 312	RECEPTOR-LIKE CYTOPLASMIC KINASE 312		11	LOC_Os11g07130	 Tolerance and resistance - Stress tolerance	Os11g0172350	LOC_Os11g07130.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18986	RLCK313	OsRLCK313	RECEPTOR-LIKE CYTOPLASMIC KINASE 313	Receptor-like Cytoplasmic Kinase 313	RECEPTOR-LIKE CYTOPLASMIC KINASE 313		11	LOC_Os11g07190			LOC_Os11g07190				GO:0016772 - transferase activity, transferring phosphorus-containing groups		
18987	RLCK314	OsRLCK314, 25L2	RECEPTOR-LIKE CYTOPLASMIC KINASE 314	Receptor-like Cytoplasmic Kinase 314, LOC_Os11g07225-like 2	RECEPTOR-LIKE CYTOPLASMIC KINASE 314	25L2-t, 25L2*	11	LOC_Os11g07240. 25L2 is the one of two leucine-rich repeat receptor-like kinase (LRR-RLK) genes in Hwi1 locus which induce hybrid weakness (Chen et al. 2014).	 Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness	Os11g0173550	LOC_Os11g07240.1				GO:0048364 - root development, GO:0009408 - response to heat	TO:0000432 - temperature response trait, TO:0000654 - shoot development trait, TO:0000207 - plant height, TO:0000084 - root number, TO:0000392 - sterility or fertility trait	PO:0007520 - root development stage 
18988	RLCK315	OsRLCK315, OsUSP39, USP39	RECEPTOR-LIKE CYTOPLASMIC KINASE 315	Receptor-like Cytoplasmic Kinase 315, universal stress protein 39	RECEPTOR-LIKE CYTOPLASMIC KINASE 315		11		 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0194900	LOC_Os11g08950.1				GO:0005524 - ATP binding, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0009005 - root , PO:0009009 - plant embryo 
18989	RLCK317	OsRLCK317	RECEPTOR-LIKE CYTOPLASMIC KINASE 317	Receptor-like Cytoplasmic Kinase 317	RECEPTOR-LIKE CYTOPLASMIC KINASE 317		11	LOC_Os11g10690 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
18990	RLCK319	OsRLCK319, OsCRLK21, CRLK21	RECEPTOR-LIKE CYTOPLASMIC KINASE 319	Receptor-like Cytoplasmic Kinase 319	RECEPTOR-LIKE CYTOPLASMIC KINASE 319		11	LOC_Os11g11780. OsCRLK21 in Sengupta et al. 2018.	 Tolerance and resistance - Disease resistance	Os11g0225000	LOC_Os11g11780.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0005829 - cytosol, GO:0004674 - protein serine/threonine kinase activity	TO:0000074 - blast disease	
18991	RLCK320	OsRLCK320	RECEPTOR-LIKE CYTOPLASMIC KINASE 320	Receptor-like Cytoplasmic Kinase 320	RECEPTOR-LIKE CYTOPLASMIC KINASE 320		11	LOC_Os11g12620	 Reproductive organ - panicle	Os11g0233800	LOC_Os11g12620.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
18992	RLCK321	OsRLCK321	RECEPTOR-LIKE CYTOPLASMIC KINASE 321	Receptor-like Cytoplasmic Kinase 321	RECEPTOR-LIKE CYTOPLASMIC KINASE 321		11		 Tolerance and resistance - Stress tolerance	Os11g0274100	LOC_Os11g17380.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
18993	RLCK322	OsRLCK322	RECEPTOR-LIKE CYTOPLASMIC KINASE 322	Receptor-like Cytoplasmic Kinase 322	RECEPTOR-LIKE CYTOPLASMIC KINASE 322		11	LOC_Os11g17440		Os11g0274700	LOC_Os11g17440.1				GO:0016772 - transferase activity, transferring phosphorus-containing groups		
18994	RLCK323	OsRLCK323	RECEPTOR-LIKE CYTOPLASMIC KINASE 323	Receptor-like Cytoplasmic Kinase 323	RECEPTOR-LIKE CYTOPLASMIC KINASE 323		11	LOC_Os11g18670			LOC_Os11g18670				GO:0005524 - ATP binding, GO:0016772 - transferase activity, transferring phosphorus-containing groups		
18995	RLCK324	OsRLCK324	RECEPTOR-LIKE CYTOPLASMIC KINASE 324	Receptor-like Cytoplasmic Kinase 324	RECEPTOR-LIKE CYTOPLASMIC KINASE 324		11			Os11g0294800/Os11g0294901	LOC_Os11g18980.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
18996	RLCK325	OsRLCK325	RECEPTOR-LIKE CYTOPLASMIC KINASE 325	Receptor-like Cytoplasmic Kinase 325	RECEPTOR-LIKE CYTOPLASMIC KINASE 325		11	LOC_Os11g19490	 Tolerance and resistance - Stress tolerance	Os11g0300700	LOC_Os11g19490.1				GO:0004672 - protein kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
18997	RLCK326	OsRLCK326	RECEPTOR-LIKE CYTOPLASMIC KINASE 326	Receptor-like Cytoplasmic Kinase 326	RECEPTOR-LIKE CYTOPLASMIC KINASE 326		11	TO:0000770: bacterial blight disease resistance.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0441900	LOC_Os11g25510.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0006468 - protein amino acid phosphorylation	TO:0000315 - bacterial disease resistance	PO:0025034 - leaf 
18998	RLCK327	OsRLCK327	RECEPTOR-LIKE CYTOPLASMIC KINASE 327	Receptor-like Cytoplasmic Kinase 327	RECEPTOR-LIKE CYTOPLASMIC KINASE 327		11	LOC_Os11g25860		Os11g0445300	LOC_Os11g25860.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
18999	RLCK328	OsRLCK328	RECEPTOR-LIKE CYTOPLASMIC KINASE 328	Receptor-like Cytoplasmic Kinase 328	RECEPTOR-LIKE CYTOPLASMIC KINASE 328		11	LOC_Os11g29510		Os11g0485700	LOC_Os11g29510.1						
19000	RLCK329	OsRLCK329	RECEPTOR-LIKE CYTOPLASMIC KINASE 329	Receptor-like Cytoplasmic Kinase 329	RECEPTOR-LIKE CYTOPLASMIC KINASE 329		11	LOC_Os11g34610		Os11g0549000	LOC_Os11g34610.1						
19001	RLCK331	OsRLCK331	RECEPTOR-LIKE CYTOPLASMIC KINASE 331	Receptor-like Cytoplasmic Kinase 331	RECEPTOR-LIKE CYTOPLASMIC KINASE 331		11	LOC_Os11g35100			LOC_Os11g35100				GO:0005524 - ATP binding		
19004	RLCK334	OsRLCK334	RECEPTOR-LIKE CYTOPLASMIC KINASE 334	Receptor-like Cytoplasmic Kinase 334	RECEPTOR-LIKE CYTOPLASMIC KINASE 334		11	LOC_Os11g35274	 Seed,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os11g0556400	LOC_Os11g35274.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0009010 - seed , PO:0009049 - inflorescence 
19006	RLCK336	OsRLCK336, OsJRL22, JRL22	RECEPTOR-LIKE CYTOPLASMIC KINASE 336	Receptor-like Cytoplasmic Kinase 336, Jacalin-related lectin 22	RECEPTOR-LIKE CYTOPLASMIC KINASE 336		11			Os11g0607900	LOC_Os11g39420.1				GO:0030246 - carbohydrate binding		
19007	RLCK337	OsRLCK337	RECEPTOR-LIKE CYTOPLASMIC KINASE 337	Receptor-like Cytoplasmic Kinase 337	RECEPTOR-LIKE CYTOPLASMIC KINASE 337		11	LOC_Os11g39450		Os11g0608300	LOC_Os11g39450.1						
19008	RLCK338	OsRLCK338, OsJRL24, JRL24	RECEPTOR-LIKE CYTOPLASMIC KINASE 338	Receptor-like Cytoplasmic Kinase 338, Jacalin-related lectin 24	RECEPTOR-LIKE CYTOPLASMIC KINASE 338		11			Os11g0608700	LOC_Os11g39490.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19009	RLCK339	OsRLCK339, OsJRL25, JRL25	RECEPTOR-LIKE CYTOPLASMIC KINASE 339	Receptor-like Cytoplasmic Kinase 339, Jacalin-related lectin 25	RECEPTOR-LIKE CYTOPLASMIC KINASE 339		11			Os11g0609500	LOC_Os11g39530.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation		
19010	RLCK340	OsRLCK340	RECEPTOR-LIKE CYTOPLASMIC KINASE 340	Receptor-like Cytoplasmic Kinase 340	RECEPTOR-LIKE CYTOPLASMIC KINASE 340		11	LOC_Os11g40380		Os11g0618400	LOC_Os11g40380.1						
19011	RLCK341	OsRLCK341	RECEPTOR-LIKE CYTOPLASMIC KINASE 341	Receptor-like Cytoplasmic Kinase 341	RECEPTOR-LIKE CYTOPLASMIC KINASE 341		11	LOC_Os11g40430		Os11g0618900	LOC_Os11g40430.1						
19012	RLCK342	OsRLCK342, OsSTA269	RECEPTOR-LIKE CYTOPLASMIC KINASE 342	Receptor-like Cytoplasmic Kinase 342	RECEPTOR-LIKE CYTOPLASMIC KINASE 342		11	LOC_Os11g42440. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0644000	LOC_Os11g42440.1						PO:0009066 - anther 
19013	RLCK343	OsRLCK343	RECEPTOR-LIKE CYTOPLASMIC KINASE 343	Receptor-like Cytoplasmic Kinase 343	RECEPTOR-LIKE CYTOPLASMIC KINASE 343		11	LOC_Os11g44250		Os11g0664000	LOC_Os11g44250.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19014	RLCK344	OsRLCK344	RECEPTOR-LIKE CYTOPLASMIC KINASE 344	Receptor-like Cytoplasmic Kinase 344	RECEPTOR-LIKE CYTOPLASMIC KINASE 344		11			Os11g0664100/Os11g0664133	LOC_Os11g44260.1						
19015	RLCK345	OsRLCK345	RECEPTOR-LIKE CYTOPLASMIC KINASE 345	Receptor-like Cytoplasmic Kinase 345	RECEPTOR-LIKE CYTOPLASMIC KINASE 345		11	LOC_Os11g44430		Os11g0666200	LOC_Os11g44430.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19016	RLCK346	OsRLCK346	RECEPTOR-LIKE CYTOPLASMIC KINASE 346	Receptor-like Cytoplasmic Kinase 346	RECEPTOR-LIKE CYTOPLASMIC KINASE 346		11	LOC_Os11g44500		Os11g0667000	LOC_Os11g44500.1						
19017	RLCK347	OsRLCK347	RECEPTOR-LIKE CYTOPLASMIC KINASE 347	Receptor-like Cytoplasmic Kinase 347	RECEPTOR-LIKE CYTOPLASMIC KINASE 347		11			Os11g0667500/Os11g0667550	LOC_Os11g44550.1						
19018	RLCK348	OsRLCK348	RECEPTOR-LIKE CYTOPLASMIC KINASE 348	Receptor-like Cytoplasmic Kinase 348	RECEPTOR-LIKE CYTOPLASMIC KINASE 348		11		 Seed,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os11g0667600/Os11g0667700	LOC_Os11g44560.1				GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009010 - seed 
19019	RLCK349	OsRLCK349	RECEPTOR-LIKE CYTOPLASMIC KINASE 349	Receptor-like Cytoplasmic Kinase 349	RECEPTOR-LIKE CYTOPLASMIC KINASE 349		11		 Biochemical character	Os11g0668800	LOC_Os11g44660.1				GO:0006468 - protein amino acid phosphorylation, GO:0007166 - cell surface receptor linked signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19020	RLCK350	OsRLCK350	RECEPTOR-LIKE CYTOPLASMIC KINASE 350	Receptor-like Cytoplasmic Kinase 350	RECEPTOR-LIKE CYTOPLASMIC KINASE 350		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0669200	LOC_Os11g44690.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009046 - flower , PO:0009006 - shoot system , PO:0009010 - seed 
19021	RLCK351	OsRLCK351	RECEPTOR-LIKE CYTOPLASMIC KINASE 351	Receptor-like Cytoplasmic Kinase 351	RECEPTOR-LIKE CYTOPLASMIC KINASE 351		11			Os11g0671950/Os11g0672200	LOC_Os11g44860.1						
19022	RLCK352	OsRLCK352	RECEPTOR-LIKE CYTOPLASMIC KINASE 352	Receptor-like Cytoplasmic Kinase 352	RECEPTOR-LIKE CYTOPLASMIC KINASE 352		11	LOC_Os11g45540	 Tolerance and resistance - Disease resistance	Os11g0681400	LOC_Os11g45540.1				GO:0050832 - defense response to fungus, GO:0008270 - zinc ion binding	TO:0000074 - blast disease	
19023	RLCK353	OsRLCK353	RECEPTOR-LIKE CYTOPLASMIC KINASE 353	Receptor-like Cytoplasmic Kinase 353, wall receptor protein kinase 5, wall-associated receptor kinase 5-like protein	RECEPTOR-LIKE CYTOPLASMIC KINASE 353		11	BGIOSGA032461, BGIOSGA035704 (indica).	 Tolerance and resistance - Insect resistance	Os11g0691280	LOC_Os11g46870.1				GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
19024	RLCK354	OsRLCK354, OsRLCK355, RLCK355	RECEPTOR-LIKE CYTOPLASMIC KINASE 354	Receptor-like Cytoplasmic Kinase 354	RECEPTOR-LIKE CYTOPLASMIC KINASE 354		11	OsRLCK355 in Wang et al. 2024.	 Tolerance and resistance - Disease resistance	Os11g0691800	LOC_Os11g46960.1				GO:0004672 - protein kinase activity, GO:0006952 - defense response	TO:0000112 - disease resistance	
19025	RLCK355	OsRLCK355	RECEPTOR-LIKE CYTOPLASMIC KINASE 355	Receptor-like Cytoplasmic Kinase 355	RECEPTOR-LIKE CYTOPLASMIC KINASE 355		11	LOC_Os11g47000			LOC_Os11g47000				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19026	RLCK356	OsRLCK356	RECEPTOR-LIKE CYTOPLASMIC KINASE 356	Receptor-like Cytoplasmic Kinase 356	RECEPTOR-LIKE CYTOPLASMIC KINASE 356		11	LOC_Os11g47170			LOC_Os11g47170				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19027	RLCK357	OsRLCK357	RECEPTOR-LIKE CYTOPLASMIC KINASE 357	Receptor-like Cytoplasmic Kinase 357	RECEPTOR-LIKE CYTOPLASMIC KINASE 357		11	LOC_Os11g47490			LOC_Os11g47490				GO:0005524 - ATP binding		
19028	RLCK358	OsRLCK358	RECEPTOR-LIKE CYTOPLASMIC KINASE 358	Receptor-like Cytoplasmic Kinase 358	RECEPTOR-LIKE CYTOPLASMIC KINASE 358		12			Os12g0109800/Os12g0109850	LOC_Os12g01910.1				GO:0004672 - protein kinase activity		
19029	RLCK359	OsRLCK359	RECEPTOR-LIKE CYTOPLASMIC KINASE 359	Receptor-like Cytoplasmic Kinase 359	RECEPTOR-LIKE CYTOPLASMIC KINASE 359		12	LOC_Os12g02810		Os12g0121100	LOC_Os12g02810.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19030	RLCK360	OsRLCK360, SDK3, OsSDK3	RECEPTOR-LIKE CYTOPLASMIC KINASE 360	Receptor-like Cytoplasmic Kinase 360, S-Domain kinase-3	RECEPTOR-LIKE CYTOPLASMIC KINASE 360		12	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0130800	LOC_Os12g03690.1				GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	
19031	RLCK361	OsRLCK361, OsUSP40, USP40	RECEPTOR-LIKE CYTOPLASMIC KINASE 361	Receptor-like Cytoplasmic Kinase 361, universal stress protein 40	RECEPTOR-LIKE CYTOPLASMIC KINASE 361		12			Os12g0180500	LOC_Os12g07990.1						
19032	RLCK362	OsRLCK362, OsUSP41, USP41	RECEPTOR-LIKE CYTOPLASMIC KINASE 362	Receptor-like Cytoplasmic Kinase 362, universal stress protein 41	RECEPTOR-LIKE CYTOPLASMIC KINASE 362		12			Os12g0181200	LOC_Os12g08050.1, LOC_Os12g08060.1						
19033	RLCK363	OsRLCK363	RECEPTOR-LIKE CYTOPLASMIC KINASE 363	Receptor-like Cytoplasmic Kinase 363	RECEPTOR-LIKE CYTOPLASMIC KINASE 363		12	LOC_Os12g13310 (not found in MSU Rice Genome Annotation Project Release 7 data).							GO:0005524 - ATP binding		
19034	RLCK364	OsRLCK364	RECEPTOR-LIKE CYTOPLASMIC KINASE 364	Receptor-like Cytoplasmic Kinase 364	RECEPTOR-LIKE CYTOPLASMIC KINASE 364		12	LOC_Os12g14480			LOC_Os12g14480				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19035	RLCK365	OsRLCK365	RECEPTOR-LIKE CYTOPLASMIC KINASE 365	Receptor-like Cytoplasmic Kinase 365	RECEPTOR-LIKE CYTOPLASMIC KINASE 365		12	LOC_Os12g14610		Os12g0249300	LOC_Os12g14610.1						
19036	RLCK366	OsRLCK366	RECEPTOR-LIKE CYTOPLASMIC KINASE 366	Receptor-like Cytoplasmic Kinase 366	RECEPTOR-LIKE CYTOPLASMIC KINASE 366		12	LOC_Os12g14699		Os12g0249900	LOC_Os12g14699.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19037	RLCK367	OsRLCK367	RECEPTOR-LIKE CYTOPLASMIC KINASE 367	Receptor-like Cytoplasmic Kinase 367	RECEPTOR-LIKE CYTOPLASMIC KINASE 367		12	LOC_Os12g16520			LOC_Os12g16520				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19039	RLCK369	OsRLCK369	RECEPTOR-LIKE CYTOPLASMIC KINASE 369	Receptor-like Cytoplasmic Kinase 369	RECEPTOR-LIKE CYTOPLASMIC KINASE 369		12	LOC_Os12g30180		Os12g0486900	LOC_Os12g30180.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
19040	RLCK370	OsRLCK370	RECEPTOR-LIKE CYTOPLASMIC KINASE 370	Receptor-like Cytoplasmic Kinase 370	RECEPTOR-LIKE CYTOPLASMIC KINASE 370		12	BGIOSGA033580 (indica).	 Tolerance and resistance - Insect resistance	Os12g0499700	LOC_Os12g31560.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0009624 - response to nematode, GO:0002215 - defense response to nematode, GO:0004674 - protein serine/threonine kinase activity	TO:0000384 - nematode damage resistance	
19041	RLCK371	OsRLCK371	RECEPTOR-LIKE CYTOPLASMIC KINASE 371	Receptor-like Cytoplasmic Kinase 371	RECEPTOR-LIKE CYTOPLASMIC KINASE 371		12	LOC_Os12g31610		Os12g0500400	LOC_Os12g31610.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
19042	RLCK372	OsRLCK372	RECEPTOR-LIKE CYTOPLASMIC KINASE 372	Receptor-like Cytoplasmic Kinase 372	RECEPTOR-LIKE CYTOPLASMIC KINASE 372		12	LOC_Os12g33600		Os12g0519850	LOC_Os12g33600.1						
19043	RLCK373	OsRLCK373	RECEPTOR-LIKE CYTOPLASMIC KINASE 373	Receptor-like Cytoplasmic Kinase 373	RECEPTOR-LIKE CYTOPLASMIC KINASE 373		12	LOC_Os12g41710	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed,  Tolerance and resistance - Disease resistance	Os12g0611100	LOC_Os12g41710.1, LOC_Os12g41710.2, LOC_Os12g41710.3, LOC_Os12g41710.4				GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0001170 - seed development stage 
19045	RLCK376	OsRLCK376	RECEPTOR-LIKE CYTOPLASMIC KINASE 376	Receptor-like Cytoplasmic Kinase 376	RECEPTOR-LIKE CYTOPLASMIC KINASE 376												
19046	RLCK378	OsRLCK378	RECEPTOR-LIKE CYTOPLASMIC KINASE 378	Receptor-like Cytoplasmic Kinase 378	RECEPTOR-LIKE CYTOPLASMIC KINASE 378		12	LOC_Os10g07548		Os10g0162836 	LOC_Os10g07548.1						
19047	RLCK379	OsRLCK379	RECEPTOR-LIKE CYTOPLASMIC KINASE 379	Receptor-like Cytoplasmic Kinase 379	RECEPTOR-LIKE CYTOPLASMIC KINASE 379		12	LOC_Os04g53996		Os04g0632300 	LOC_Os04g53996.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen		
19048	CYP35	OsCYP35	CYCLOPHILIN 35	cyclophilin 35	CYCLOPHILIN 35		3	LOC_Os03g01090.	 Biochemical character	Os03g0100300 	LOC_Os03g01090.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding		
19049	CYP124	OsCYP124	CYCLOPHILIN 124	cyclophilin 124	CYCLOPHILIN 124		10	LOC_Os10g06640.	 Biochemical character	Os10g0154900 	LOC_Os10g06640.1				GO:0003755 - peptidyl-prolyl cis-trans isomerase activity, GO:0006457 - protein folding		
19050	_	OsGR1, GR1	_	glutathione reductase 1			10	chloroplastic isogene. Os10g0415112 (in Rap1 (build3), Rap2 (build4)).	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0050660 - FAD binding, GO:0016668 - oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor, GO:0045454 - cell redox homeostasis		
19051	MDHAR1	OsMDAR1, MDAR1, OsMDHAR1, OsMDHAR4-1, MDHAR4-1	MONODEHYDROASCORBATE REDUCTASE 1	monodehydroascorbate reductase 1	MONODEHYDROASCORBATE REDUCTASE 1		2	cytosolic isoform. OsMDHAR4-1 in Tripathi et al. 2020.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os02g0707000 	LOC_Os02g47790.1				GO:0048830 - adventitious root development, GO:0009733 - response to auxin stimulus, GO:0046685 - response to arsenic, GO:0045454 - cell redox homeostasis, GO:0050660 - FAD binding	TO:0000163 - auxin sensitivity, TO:0000031 - silicon sensitivity	
19052	MDHAR2	OsMDAR2, OsMDHAR2, MDAR2, OsMDHAR4, MDHAR4	MONODEHYDROASCORBATE REDUCTASE 2	monodehydroascorbate reductase 2, Monodehydroascorbate reductase 4	MONODEHYDROASCORBATE REDUCTASE 2	osmdhar4	2	cytosolic isoform. OsMDHAR4 in Liu et al. 2018. GO:0090333: regulation of stomatal closure. TO:0020097: stomatal opening.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0707100 	LOC_Os02g47800.1				GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005777 - peroxisome, GO:0070482 - response to oxygen levels, GO:0009651 - response to salt stress, GO:0050660 - FAD binding	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000015 - oxygen sensitivity, TO:0000259 - heat tolerance	PO:0025034 - leaf 
19053	MDHAR5	OsMDAR5, MDAR5, OsMDHAR5	MONODEHYDROASCORBATE REDUCTASE 5	monodehydroascorbate reductase 5	MONODEHYDROASCORBATE REDUCTASE 5		8	chloroplastic isoform.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0151800 	LOC_Os08g05570.4, LOC_Os08g05570.3				GO:0016656 - monodehydroascorbate reductase (NADH) activity, GO:0005524 - ATP binding, GO:0042744 - hydrogen peroxide catabolic process, GO:0009570 - chloroplast stroma, GO:0010319 - stromule, GO:0005739 - mitochondrion, GO:0050660 - FAD binding		
19054	_	ESL	_	early senescence leaf, early-senescence-leaf		esl			 Tolerance and resistance - Stress tolerance						GO:0033355 - ascorbate glutathione cycle, GO:0042743 - hydrogen peroxide metabolic process, GO:0010150 - leaf senescence	TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000326 - leaf color, TO:0000592 - 1000-dehulled grain weight, TO:0000180 - spikelet fertility, TO:0000495 - chlorophyll content, TO:0000040 - panicle length, TO:0000449 - grain yield per plant, TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence	
19055	_	OsPRX1, POX1	_	Peroxidase 1				U95217.	 Biochemical character						GO:0006979 - response to oxidative stress, GO:0020037 - heme binding		
19056	SKIN1	OsSKIN1, OsO3L8, O3L8	SNRK1A-INTERACTING NEGATIVE REGULATOR 1	SnRK1A-interacting negative regulator 1, OXIDATIVE STRESS 3-like 8, OXS3-like 8	SNRK1A-INTERACTING NEGATIVE REGULATOR 1		9	LOC_Os09g32330. rice OXS3 homolog. candidate gene for qSSR9-2.	 Tolerance and resistance - Stress tolerance	Os09g0499000	LOC_Os09g32330.1				GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait	
19057	SKIN2	OsSKIN2, OsO3L9, O3L9	SNRK1A-INTERACTING NEGATIVE REGULATOR 2	SnRK1A-interacting negative regulator 2, OXIDATIVE STRESS 3-like 9, OXS3-like 9	SNRK1A-INTERACTING NEGATIVE REGULATOR 2		8	rice OXS3 homolog.	 Tolerance and resistance - Stress tolerance	Os08g0516900	LOC_Os08g40510.1				GO:0009628 - response to abiotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait	
19059	_	Pita3(t)	_	Pyricularia oryzae resistance, Magnaporthe grisea resistance ta3, Blast resistance ta23			12	IRBLta2-Re has an additional resistance gene other than Pita, which was tentatively designated Pita3(t) (supposed to be Pita2). The resistance gene, Pita3(t), was assumed to be in an interval of approximately 178 kb which containing a total of 5 NBS-LRR genes and was about 500 kb away from the Pita gene.	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus		
19060	GRAS17	OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17, DLN96, OsDLN96, OsGRAS15, GRAS15	GRAS PROTEIN 17	GRAS protein 17, DLN repressor 96, DLN motif protein 96	GRAS PROTEIN 17		3	DELLA protein subfamily gene. OsGRAS15 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0690600	LOC_Os03g48450.2, LOC_Os03g48450.3, LOC_Os03g48450.4, LOC_Os03g48450.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance	
19061	WG3	OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19, GRAS19, OsGRAS18, GRAS18	WIDE GRAIN 3	SCARECROW-LIKE7, SCARECROW-LIKE 7, GRAS protein 19, wide grain 3	GRAS PROTEIN 19	wg3	3	DELLA protein subfamily gene. RCSB Protein Data Bank entry 5HYZ. OsGRAS18 in Dutta et al. 2021. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Other,  Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Culm	Os03g0723000	LOC_Os03g51330.1				GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0006355 - regulation of transcription, DNA-dependent, GO:0042127 - regulation of cell proliferation	TO:0000734 - grain length, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000175 - bacterial blight disease resistance, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0000615 - abscisic acid sensitivity, TO:0000357 - growth and development trait, TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000382 - 1000-seed weight	PO:0009049 - inflorescence 
19062	_	OsPEAMT1	_	Phosphoethanolamine N-Methyltransferase 1			1	LOC_Os01g50030.	 Biochemical character	Os01g0695100	LOC_Os01g50030.1, LOC_Os01g50032.1				GO:0042425 - choline biosynthetic process, GO:0006656 - phosphatidylcholine biosynthetic process, GO:0000234 - phosphoethanolamine N-methyltransferase activity		
19063	_	OsPEAMT2	_	Phosphoethanolamine N-Methyltransferase 2			5	LOC_Os05g47540.	 Biochemical character	Os05g0548900	LOC_Os05g47540.1, LOC_Os05g47540.2, LOC_Os05g47540.3, LOC_Os05g47540.4, LOC_Os05g47540.5, LOC_Os05g47545.1				GO:0042425 - choline biosynthetic process		
19064	_		_	NADH dehydrogenase 1 a subcomplex subunit 5			3	LOC_Os03g19890. GO:0090351: seedling development.	 Vegetative organ - Culm,  Seed - Morphological traits - Endosperm,  Biochemical character	Os03g0313000	LOC_Os03g19890.1				GO:0005982 - starch metabolic process, GO:0006754 - ATP biosynthetic process, GO:0009960 - endosperm development, GO:0016651 - oxidoreductase activity, acting on NADH or NADPH, GO:0022904 - respiratory electron transport chain, GO:0009740 - gibberellic acid mediated signaling, GO:0005743 - mitochondrial inner membrane	TO:0000207 - plant height, TO:0000486 - seed color	PO:0007633 - endosperm development stage , PO:0007131 - seedling development stage 
19066	PIP2;9	OsPIP2;9, PIP2.9, PIP2-9	PLASMA MEMBRANE INTRINSIC PROTEIN 2;9	Probable aquaporin PIP2.9, Probable aquaporin PIP2-9, Plasma membrane intrinsic protein 2-9	PLASMA MEMBRANE INTRINSIC PROTEIN 2;9		7	LOC_Os07g26640.	 Biochemical character	Os07g0448200	LOC_Os07g26640.1				GO:0005215 - transporter activity, GO:0016021 - integral to membrane		
19067	PIP2;10	OsPIP2;10, PIP2.10, PIP2-10	PLASMA MEMBRANE INTRINSIC PROTEIN 2;10	Probable aquaporin PIP2.10, Probable aquaporin PIP2-10, Plasma membrane intrinsic protein 2-10	PLASMA MEMBRANE INTRINSIC PROTEIN 2;10		10	LOC_Os10g34000.	 Biochemical character	Os10g0481100	LOC_Os10g34000.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
19068	NIP1;5	OsNIP1;5, NIP1-5	NOD26 LIKE INTRINSIC PROTEIN 1;5	Aquaporin NIP1-5, NOD26-like intrinsic protein 1-5	NOD26 LIKE INTRINSIC PROTEIN 1;5		1	LOC_Os01g10530.	 Biochemical character	Os01g0201900	LOC_Os01g10530.1, LOC_Os01g10530.2, LOC_Os01g10530.3						
19069	NIP3;4	OsNIP3;4, NIP3-4	NOD26 LIKE INTRINSIC PROTEIN 3;4	Aquaporin NIP3-4, NOD26-like intrinsic protein 3-4	NOD26 LIKE INTRINSIC PROTEIN 3;4		8	LOC_Os08g05580.	 Biochemical character	Os08g0151900	LOC_Os08g05580.1				GO:0016021 - integral to membrane, GO:0005215 - transporter activity		
19070	NIP3;5	OsNIP3;5, NIP3-5	NOD26 LIKE INTRINSIC PROTEIN 3;5	Aquaporin NIP3-5, NOD26-like intrinsic protein 3-5	NOD26 LIKE INTRINSIC PROTEIN 3;5		12	LOC_Os12g10280.	 Biochemical character	Os12g0204100	LOC_Os12g10280.1				GO:0005215 - transporter activity, GO:0016020 - membrane		
19072	HDA704	OsHDA704	HISTONE DEACETYLASE 704	histone deacetylase 704	HISTONE DEACETYLASE 704		7	RPD/HDA1 family.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Culm	Os07g0164100	LOC_Os07g06980.1, LOC_Os07g06980.2				GO:0004407 - histone deacetylase activity, GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0000118 - histone deacetylase complex, GO:0005730 - nucleolus, GO:0046872 - metal ion binding, GO:0016575 - histone deacetylation, GO:0000122 - negative regulation of transcription from RNA polymerase II promoter, GO:0009640 - photomorphogenesis, GO:0016787 - hydrolase activity, GO:0048573 - photoperiodism, flowering, GO:0009294 - DNA mediated transformation	TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0000207 - plant height, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009030 - carpel 
19073	PEZ1	OsPEZ1, OsMATE14, MATE14	PHENOLICS EFFLUX ZERO 1	phenolics efflux zero 1, multidrug and toxic compound extrusion 14		pez1-1, pez1-2	3	TO:0006059: cadmium concentration. Phenolics efflux transporter.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0571900	LOC_Os03g37490.1				GO:0015691 - cadmium ion transport, GO:0005886 - plasma membrane, GO:0010040 - response to iron(II) ion, GO:0015238 - drug transporter activity, GO:0016020 - membrane, GO:0015297 - antiporter activity, GO:0034755 - iron ion transmembrane transport	TO:0000224 - iron sensitivity	
19074	PEZ2	OsPEZ2, OsMATE15, MATE15	PHENOLICS EFFLUX ZERO 2	phenolics efflux zero 2, phenolics efflux transporter 2, multidrug and toxic compound extrusion 15		pez2	3	TO:0006059: cadmium concentration.	 Biochemical character	Os03g0572900	LOC_Os03g37640.1, LOC_Os03g37640.2				GO:0015691 - cadmium ion transport, GO:0016021 - integral to membrane, GO:0034755 - iron ion transmembrane transport, GO:0015238 - drug transporter activity, GO:0015297 - antiporter activity		
19075	_		_	PR2/Beta-1, 3-glucanase			1	pathogenesis-related (PR) gene. LOC_Os01g71400. Os01g0941400 (in Rap1 (build3), Rap2 (build4), Rap3 (build5)).	 Biochemical character,  Tolerance and resistance - Disease resistance		LOC_Os01g71400				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
19076	_		_	PR2/Beta-1, 3-glucanase			1	pathogenesis-related (PR) gene.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0944500 	LOC_Os01g71650.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
19077	_		_	PR2/Beta-1, 3-glucanase			3	pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0600600 	LOC_Os03g40330.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
19078	BG3	PR2, OsPR2, OsBG3	BETA-1,3-GLUCANASE 3	PR2/Beta-1, 3-glucanase, Glycosyl hydrolase 17 family protein, beta-1, 3-glucanase 3	BETA-1,3-GLUCANASE 3		7	pathogenesis-related (PR) gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0539900 	LOC_Os07g35560.1, LOC_Os07g35560.2, LOC_Os07g35560.3				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19079	_	PR5	_	PR5/thaumatin, PATHOGENESIS RELATED GENE 5			12	pathogenesis-related (PR) gene.	 Tolerance and resistance - Disease resistance	Os12g0629700 					GO:0005576 - extracellular region, GO:0006952 - defense response		
19080	_		_	Leucine-rich repeat receptor-like kinase			1		 Tolerance and resistance - Disease resistance	Os01g0132100 	LOC_Os01g04070.1						
19081	_		_	Leucine-rich repeat receptor-like kinase			2		 Tolerance and resistance - Disease resistance	Os02g0609900 	LOC_Os02g39660.1						
19082	_		_	Leucine-rich repeat receptor-like kinase			11		 Tolerance and resistance - Disease resistance	Os11g0625900 	LOC_Os11g40970.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
19083	_		_	Cysteine-rich receptor-like kinase			7		 Tolerance and resistance - Disease resistance	Os07g0538200 	LOC_Os07g35370.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
19084	_	RIR1b, Rir1b, OsRALF-30, OsRALF30, RALF-30, RALF30	_	Defense-related gene/RIR1b, Rapid alkalization factor 30			10		 Tolerance and resistance - Disease resistance	Os10g0569800 	LOC_Os10g42020.1, LOC_Os10g42020.2, LOC_Os10g42020.3				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19085	_	DRR206	_	Disease-resistance response gene/DRR206			1		 Tolerance and resistance - Disease resistance	Os01g0879200 	LOC_Os01g65700.1						
19086	H1	OsH1, OsHis1.1, His1.1	HISTONE H1	G1/S-phase gene H1, Histone H1	HISTONE H1		4	PO:0030117: spike inflorescence. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os04g0253000	LOC_Os04g18090.1				GO:0009409 - response to cold, GO:0045910 - negative regulation of DNA recombination, GO:0030261 - chromosome condensation, GO:0031492 - nucleosomal DNA binding, GO:0003690 - double-stranded DNA binding, GO:0030527 - structural constituent of chromatin, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0005634 - nucleus	TO:0000346 - tiller number, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0001016 - relative chlorophyll content, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0002657 - oxidative stress, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent	PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0025034 - leaf , PO:0020141 - stem node , PO:0020142 - stem internode , PO:0009047 - stem 
19087	_	CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1	_	G1/S-phase gene CAK1, CDK-activating kinase assembly factor, MENAGE A TROIS 1, MAT1 assembly factor			6	a putative meiosis-related gene. CDK-activating kinase complex.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os06g0171700	LOC_Os06g07480.1				GO:0007049 - cell cycle, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005675 - holo TFIIH complex, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0007126 - meiosis, GO:0005634 - nucleus, GO:0006281 - DNA repair		
19088	MAD2	OsMAD2	MITOTIC ARREST-DEFICIENT 2	cell expansion-related gene MAD2	MITOTIC ARREST-DEFICIENT 2		4		 Tolerance and resistance - Stress tolerance	Os04g0486500	LOC_Os04g40940.1, LOC_Os04g40940.2				GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0051301 - cell division, GO:0016572 - histone phosphorylation, GO:0007067 - mitosis, GO:0051510 - regulation of unidimensional cell growth, GO:0046686 - response to cadmium ion, GO:0010369 - chromocenter, GO:0000777 - condensed chromosome kinetochore, GO:0008283 - cell proliferation, GO:0007094 - mitotic cell cycle spindle assembly checkpoint, GO:0005737 - cytoplasm, GO:0005828 - kinetochore microtubule, GO:0005635 - nuclear envelope, GO:0043248 - proteasome assembly, GO:0042023 - DNA endoreduplication, GO:0051788 - response to misfolded protein		
19089	_	MAPK, MAPK6	_	Mitogen-activated protein kinase 6			9	cell expansion-related gene MAPK. MAPK6 in Li et al. 2023.		Os09g0383300	LOC_Os09g21510.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		PO:0009037 - lemma , PO:0009030 - carpel , PO:0009029 - stamen , PO:0009038 - palea , PO:0020103 - flag leaf 
19090	_		_	glycosyl hydrolases family 38 protein			11	LOC_Os11g32260.	 Seed - Physiological traits - Dormancy,  Biochemical character	Os11g0525600	LOC_Os11g32260.1, LOC_Os11g32260.2				GO:0009266 - response to temperature stimulus, GO:0004559 - alpha-mannosidase activity, GO:0006013 - mannose metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0008270 - zinc ion binding	TO:0000615 - abscisic acid sensitivity, TO:0000432 - temperature response trait	PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
19091	CPA1	OsCPA1	CARBAMOYLPUTRESCINE AMIDASE 1	N-carbamoylputrescine amidase, N-carbamoyl-Put amidohydrolase 1	CARBAMOYLPUTRESCINE AMIDASE 1		2	Q93XI4. GO:0097501: stress response to metal ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os02g0533900	LOC_Os02g33080.1, LOC_Os02g33080.2				GO:0033388 - putrescine biosynthetic process from arginine, GO:0006596 - polyamine biosynthetic process, GO:0009266 - response to temperature stimulus, GO:0006979 - response to oxidative stress, GO:0005737 - cytoplasm, GO:0009845 - seed germination, GO:0010038 - response to metal ion, GO:0050126 - N-carbamoylputrescine amidase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity, TO:0002657 - oxidative stress, TO:0000432 - temperature response trait	PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
19092	PFT1	OsPFT1, OsMED25_1, MED25_1, OsMED25, MED25, OsvWA27, vWA27	PHYTOCHROME AND FLOWERING TIME 1	Mediator 25_1, mediator subunit 25, Mediator complex subunit 25, MEDIATOR25, von Willebrand factor A27	MEDIATOR SUBUNIT 25	osmed25	9		 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os09g0306700	LOC_Os09g13610.3, LOC_Os09g13610.1				GO:0042742 - defense response to bacterium, GO:0051607 - defense response to virus, GO:0009741 - response to brassinosteroid stimulus, GO:0009908 - flower development, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009742 - brassinosteroid mediated signaling, GO:0010076 - maintenance of floral meristem identity, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009651 - response to salt stress, GO:0009734 - auxin mediated signaling pathway, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000206 - leaf angle, TO:0000382 - 1000-seed weight, TO:0002677 - brassinosteroid sensitivity, TO:0000396 - grain yield, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000734 - grain length, TO:0000148 - viral disease resistance	PO:0025034 - leaf , PO:0007615 - flower development stage , PO:0009047 - stem , PO:0020105 - ligule , PO:0020104 - leaf sheath 
19093	PEP	OsPEP, OsKH28, KH28	PEPPER	K-homologous family protein 28	PEPPER		10		 Reproductive organ - Spikelet, flower, glume, awn	Os10g0414700	LOC_Os10g27470.1				GO:0003723 - RNA binding, GO:0009908 - flower development, GO:0005737 - cytoplasm		PO:0007615 - flower development stage 
19094	_	PG	_	POLYGALACTURONASE			1	LOC_Os01g07790.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0172900	LOC_Os01g07790.1				GO:0009908 - flower development, GO:0009555 - pollen development		PO:0007615 - flower development stage 
19095	_	MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96	_	"\"MODIFIER OF SNC1, 3/SUPPRESSOR OF AUXIN RESISTANCE 3\", \"MODIFIER OF SNC1, 3\", SUPPRESSOR OF AUXIN RESISTANCE 3, Nucleoporin Autopeptidase 1, nucleoporin 96"			3	LOC_Os03g07580. Nucleoporin Autopeptidase Family (Peptidase_S59; PF04096). http://rice.plantbiology.msu.edu/ca/gene_fams/27_85.shtml	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0172000	LOC_Os03g07580.1				GO:0005643 - nuclear pore, GO:0031965 - nuclear membrane, GO:0015288 - porin activity, GO:0006406 - mRNA export from nucleus, GO:0006606 - protein import into nucleus, GO:0009086 - methionine biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0009870 - defense response signaling pathway, resistance gene-dependent, GO:0009908 - flower development, GO:0009909 - regulation of flower development, GO:0010074 - maintenance of meristem identity, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation		PO:0007615 - flower development stage 
19096	_	TAF6	_	TATA BOX BINDING PROTEIN-ASSOCIATED FACTOR 6			1	LOC_Os01g32750.	 Reproductive organ - Pollination, fertilization, fertility	Os01g0510800	LOC_Os01g32750.1				GO:0005634 - nucleus, GO:0009860 - pollen tube growth, GO:0051090 - regulation of transcription factor activity, GO:0009856 - pollination, GO:0006352 - transcription initiation		
19097	SEC5	OsSEC5	EXOCYST COMPLEX COMPONENT SEC5	exocyst subunit SEC5	EXOCYST COMPLEX COMPONENT SEC5		4		 Reproductive organ - Pollination, fertilization, fertility	Os04g0421900	LOC_Os04g34450.1				GO:0009860 - pollen tube growth, GO:0009856 - pollination, GO:0000145 - exocyst, GO:0006893 - Golgi to plasma membrane transport		
19098	_	LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35	_	LATE ELONGATED HYPOCOTYL, MYB-related transcription factor 1			4	LOC_Os04g49450. a rice ortholog of Arabidopsis gene for circadian clock component. OsMYB1R35 in Li et al. 2017.	 Tolerance and resistance - Stress tolerance,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0583900	LOC_Os04g49450.1, LOC_Os04g49450.2				GO:0007623 - circadian rhythm, GO:0009908 - flower development, GO:0003682 - chromatin binding, GO:0009648 - photoperiodism, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009409 - response to cold, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006002 - proline content, TO:0000340 - total soluble sugar content	PO:0007615 - flower development stage 
19099	_	PR1b	_	pathogenesis-related protein			7		 Tolerance and resistance - Disease resistance	Os07g0127700 	LOC_Os07g03600.1				GO:0005576 - extracellular region, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19100	_		_	basic secretory protein			10	a gene in rice zygotes with paternal allele-dependent expression.	 Tolerance and resistance - Disease resistance	Os10g0491000 	LOC_Os10g34930.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19101	GLP4-1	OsGLP4-1, OsCDP4.1, CDP4.1	GERMIN-LIKE PROTEIN 4-1	Germin-like protein 4-1, cupin domain protein 4.1	GERMIN-LIKE PROTEIN 4-1		4	Q7XSN6.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os04g0617900	LOC_Os04g52720.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0005618 - cell wall, GO:0002242 - defense response to parasitic plant, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000444 - parasitic weed, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease	
19102	_		_	Alpha-L-arabinofuranosidase C-terminus family protein			12	LOC_Os12g03470.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0128700	LOC_Os12g03470.1, LOC_Os12g03470.2, LOC_Os12g03470.3, LOC_Os12g03470.4, LOC_Os12g03470.5				GO:0046373 - L-arabinose metabolic process, GO:0050832 - defense response to fungus, GO:0046556 - alpha-N-arabinofuranosidase activity	TO:0000074 - blast disease	
19103	GH5BG	OsGH5BG	GH5 BETA-GLUCOSIDASE	glucan-1, 3-beta-glucosidase, GH5 (glycosyl hydrolase family 5) beta-glucosidase	GH5 BETA-GLUCOSIDASE		10		 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0370500 	LOC_Os10g22520.1				GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus, GO:0030912 - response to deep water, GO:0009651 - response to salt stress, GO:0046688 - response to copper ion, GO:0009753 - response to jasmonic acid stimulus, GO:0048046 - apoplast, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0007015 - actin filament organization	TO:0000021 - copper sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance	PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0007057 - 0 seed germination stage 
19104	_		_	endo-1, 3-beta-glucanase			1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0947000 	LOC_Os01g71860.1				GO:0050832 - defense response to fungus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process	TO:0000074 - blast disease	
19105	ALPHACA3	OsalphaCA3, alphaCA3	ALPHA-CARBONIC ANHYDRASE 3	dioscorin, alpha-carbonic anhydrase 3	ALPHA-CARBONIC ANHYDRASE 3		8	LOC_Os08g32750.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os08g0423500 	LOC_Os08g32750.1				GO:0006730 - one-carbon metabolic process, GO:0004089 - carbonate dehydratase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19106	_		_	(Hypothetical protein)			5		 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0272800 	LOC_Os05g19030.1, LOC_Os05g19030.2				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19107	SUB30	OsSub30	SUBTILISIN 30	subtilisin-like proteinase, Subtilisin 30	SUBTILISIN 30		3	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0605300 	LOC_Os03g40830.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0050832 - defense response to fungus, GO:0005618 - cell wall	TO:0000074 - blast disease	
19108	_		_	Glycosyl hydrolase 3 family protein			4		 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0640700 	LOC_Os04g54810.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19109	SUB64	OsSUB64	SUBTILISIN 64	Subtilisin-like protease, Subtilisin 64	SUBTILISIN 64		9		 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0482660 	LOC_Os09g30458.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19110	_	alphaGa1, alpha-Gal I	_	Alpha-D-galactoside galactohydrolase, alpha-galactosidase 1, alpha-galactosidase I			10	Q9FXT4. GO:0052692: raffinose alpha-galactosidase activity. AB039671.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0493600	LOC_Os10g35110.1, LOC_Os10g35110.2, LOC_Os10g35110.3				GO:0009965 - leaf morphogenesis, GO:0050832 - defense response to fungus, GO:0043085 - positive regulation of catalytic activity, GO:0019252 - starch biosynthetic process, GO:0000023 - maltose metabolic process, GO:0007020 - microtubule nucleation, GO:0009505 - plant-type cell wall, GO:0009911 - positive regulation of flower development	TO:0000074 - blast disease	
19111	_	LOX	_	Dehydration stress-induced protein, LIPOXYGENASE			10	a cis target of MSTRG.4676.1.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0361000 	LOC_Os10g21670.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19112	_		_	Membrane-binding protein			4		 Tolerance and resistance - Disease resistance	Os04g0322100 	LOC_Os04g25650.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19113	_		_	Membrane-binding protein			4		 Tolerance and resistance - Disease resistance	Os04g0316200	LOC_Os04g25060.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
19120	_	OsRHP1, OsRING278, RING278	_	RING-H2 finger protein 1, RING-type E3 ubiquitin ligase 278			8		 Tolerance and resistance - Stress tolerance	Os08g0492500 	LOC_Os08g38460.1				GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009738 - abscisic acid mediated signaling	TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
19121	XA39	Xa39, OsRGA5-L2, RGA5-L2, OsRGA5L2, RGA5L2	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 39	Xanthomonas oryzae pv. oryzae resistance 39, OsRGA5-like 2			11	LOC_Os11g37759(Os11g0588600) is a Xa39 candidate gene. The study in Zhang et al.(2015) provides the comprehensive transcriptome profile of a rice introgression line carrying Xa39 and its parents, and identifies a set of DEGs involved in BSHR mediated by Xa39. OsRGA5-L2 in  Wen et al. 2023. GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os11g0588600	LOC_Os11g37759.1, LOC_Os11g37759.2, LOC_Os11g37759.3				GO:0006952 - defense response, GO:0002758 - innate immune response-activating signal transduction, GO:0042742 - defense response to bacterium	TO:0000179 - biotic stress trait	
19123	_	OsRH17	_	RNA helicase 17			5	Q0DLB9. DEAD-box RNA helicase protein.		Os05g0110500	LOC_Os05g01990.1, LOC_Os05g01990.2				GO:0009737 - response to abscisic acid stimulus, GO:0006626 - protein targeting to mitochondrion, GO:0006406 - mRNA export from nucleus, GO:0010388 - cullin deneddylation, GO:0006312 - mitotic recombination, GO:0005634 - nucleus, GO:0042991 - transcription factor import into nucleus, GO:0051604 - protein maturation, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0008026 - ATP-dependent helicase activity, GO:0009560 - embryo sac egg cell differentiation, GO:0009640 - photomorphogenesis	TO:0000401 - plant growth hormone sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0025281 - pollen 
19124	_	OsRH1	_	RNA helicase 1			2	Q0DWT8. LOC_Os02g55260. DEAD-box RNA helicase protein.		Os02g0795900	LOC_Os02g55260.1, LOC_Os02g55260.2				GO:0006626 - protein targeting to mitochondrion, GO:0010388 - cullin deneddylation, GO:0008026 - ATP-dependent helicase activity, GO:0009640 - photomorphogenesis, GO:0009560 - embryo sac egg cell differentiation, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0006406 - mRNA export from nucleus, GO:0006606 - protein import into nucleus		
19125	_	OsRH3	_	RNA helicase 3			3	Q0DM51. LOC_Os03g61220. DEAD-box RNA helicase protein.		Os03g0827700	LOC_Os03g61220.1, LOC_Os03g61220.2				GO:0005524 - ATP binding, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0005634 - nucleus		
19126	_	OsRH6	_	RNA helicase 6			4	Q7XMK8. LOC_Os04g45040. DEAD-box RNA helicase protein.		Os04g0533000	LOC_Os04g45040.1, LOC_Os04g45040.2, LOC_Os04g45040.3				GO:0006417 - regulation of translation, GO:0000932 - cytoplasmic mRNA processing body, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0006397 - mRNA processing		
19127	_	OsRH7	_	RNA helicase 7			9	Q650T9. LOC_Os09g34910. DEAD-box RNA helicase protein.		Os09g0520700	LOC_Os09g34910.1				GO:0005730 - nucleolus, GO:0051604 - protein maturation, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19128	_	OsRH8	_	RNA helicase 8			2	Q6H7S2. LOC_Os02g42860. DEAD-box RNA helicase protein.		Os02g0641800	LOC_Os02g42860.1				GO:0006417 - regulation of translation, GO:0006397 - mRNA processing, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0000932 - cytoplasmic mRNA processing body		
19129	_	OsRH9	_	RNA helicase 9			12	Q0ILZ4. LOC_Os12g41715. DEAD-box RNA helicase protein.		Os12g0611200	LOC_Os12g41715.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding		
19130	_	OsRH12	_	RNA helicase 12			10	Q109G2. LOC_Os10g35990. DEAD-box RNA helicase protein.		Os10g0503700	LOC_Os10g35990.1, LOC_Os10g35990.2				GO:0006397 - mRNA processing, GO:0000932 - cytoplasmic mRNA processing body, GO:0006417 - regulation of translation, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19131	_	OsRH13	_	RNA helicase 13			4	A3AVH5. LOC_Os04g43140. DEAD-box RNA helicase protein.		Os04g0510400	LOC_Os04g43140.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity		
19132	_	OsRH14, p68, OsDB10, DB10	_	RNA helicase 14, DEAD-box RNA helicase 10			1	Q5VQL1. LOC_Os01g07740. DEAD-box RNA helicase protein.	 Tolerance and resistance - Stress tolerance	Os01g0172200	LOC_Os01g07740.1, LOC_Os01g07740.2, LOC_Os01g07740.3				GO:0006364 - rRNA processing, GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
19133	_	OsRH16	_	RNA helicase 16			3	Q6ATJ8. LOC_Os03g51900. DEAD-box RNA helicase protein.		Os03g0728800	LOC_Os03g51900.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0006606 - protein import into nucleus		
19134	_	OsRH19, eIF4A-2	_	RNA helicase 19			2	Q0E2Q3. LOC_Os02g12840. DEAD-box RNA helicase protein.		Os02g0221300	LOC_Os02g12840.1				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0003743 - translation initiation factor activity		
19135	_	OsRH20	_	RNA helicase 20			1	Q5QMN3. LOC_Os01g10050. DEAD-box RNA helicase protein.		Os01g0197200	LOC_Os01g10050.1, LOC_Os01g10050.2				GO:0005524 - ATP binding, GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0005829 - cytosol, GO:0006364 - rRNA processing		
19136	_	OsRH21	_	RNA helicase 21			3	Q53RK8. LOC_Os03g50090. DEAD-box RNA helicase protein.		Os03g0708600	LOC_Os03g50090.1, LOC_Os03g50090.2, LOC_Os03g50090.3, LOC_Os03g50090.4				GO:0006397 - mRNA processing, GO:0005737 - cytoplasm, GO:0003723 - RNA binding, GO:0005524 - ATP binding		
19137	RH22	OsRH22	RNA HELICASE 22	RNA helicase 22	RNA HELICASE 22		9	Q6H601. DEAD-box RNA helicase protein.		Os09g0383400	LOC_Os09g21520.1, LOC_Os09g21520.2				GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0005524 - ATP binding, GO:0009507 - chloroplast		PO:0009037 - lemma , PO:0009038 - palea , PO:0009029 - stamen , PO:0020103 - flag leaf , PO:0009030 - carpel 
19138	_	OsRH24	_	RNA helicase 24			3	Q10MH8. LOC_Os03g19530. DEAD-box RNA helicase protein.		Os03g0308500	LOC_Os03g19530.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity		
19139	_	OsRH27	_	RNA helicase 27			3	Q84T03. LOC_Os03g58810. DEAD-box RNA helicase protein.		Os03g0802700	LOC_Os03g58810.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19140	_	OsRH28	_	RNA helicase 28			12	Q0INC5. LOC_Os12g29660. DEAD-box RNA helicase protein.		Os12g0481100	LOC_Os12g29660.1				GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding		
19141	_	OsRH30	_	RNA helicase 30			1	Q5N7W4. LOC_Os01g68320. DEAD-box RNA helicase protein.		Os01g0911100	LOC_Os01g68320.1, LOC_Os01g68320.2, LOC_Os01g68320.3, LOC_Os01g68320.4, LOC_Os01g68320.5				GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, GO:0006364 - rRNA processing, GO:0005634 - nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19142	_	OsRH32	_	RNA helicase 32			7	Q0D622. LOC_Os07g33340. DEAD-box RNA helicase protein.		Os07g0517000	LOC_Os07g33340.1				GO:0006606 - protein import into nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0005730 - nucleolus		
19143	_	OsRH34, RH34	_	RNA helicase 34			3	Q10I26. LOC_Os03g36930. DEAD-box RNA helicase protein. homologous to eukaryotic initiation factor 4AIII (eIF4AIII). 	 Reproductive organ - Heading date,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Seed	Os03g0566800	LOC_Os03g36930.1				GO:0009555 - pollen development, GO:0005730 - nucleolus, GO:0006364 - rRNA processing, GO:0035145 - exon-exon junction complex, GO:0080050 - regulation of seed development, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0009937 - regulation of gibberellic acid mediated signaling, GO:0009790 - embryonic development, GO:0048573 - photoperiodism, flowering, GO:0003723 - RNA binding, GO:0005524 - ATP binding	TO:0000180 - spikelet fertility, TO:0000145 - internode length, TO:0000653 - seed development trait, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0000620 - embryo development trait, TO:0000166 - gibberellic acid sensitivity	PO:0001170 - seed development stage , PO:0007631 - plant embryo stage , PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0001007 - pollen development stage 
19144	_	OsRH35A	_	RNA helicase 35A			2	Q0E3X4. LOC_Os02g05660. DEAD-box RNA helicase protein.		Os02g0150100	LOC_Os02g05660.1				GO:0008270 - zinc ion binding, GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19145	_	OsRH35B	_	RNA helicase 35B			6	Q5Z6G5. LOC_Os06g48210. DEAD-box RNA helicase protein.		Os06g0697200	LOC_Os06g48210.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0004386 - helicase activity		
19146	_	OsRH36	_	RNA helicase 36		osrh36	7	Q8L4E9. LOC_Os07g43980. DEAD-box RNA helicase protein. GO:0090406: pollen tube. OsRH36 is a functional ortholog of AtRH36. It is suggested that OsRH36 is required for rRNA biogenesis and female gametophyte development in rice (Huang et al. 2010). a predicted lethal-phenotype gene in Lloyd et al. 2015.		Os07g0633500	LOC_Os07g43980.1				GO:0009553 - embryo sac development, GO:0006606 - protein import into nucleus, GO:0008026 - ATP-dependent helicase activity, GO:0009561 - megagametogenesis, GO:0009791 - post-embryonic development, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006364 - rRNA processing, GO:0003723 - RNA binding		
19147	_	OsRH37	_	RNA helicase 37			3	Q75HJ0. LOC_Os03g59050. DEAD-box RNA helicase protein.		Os03g0805200	LOC_Os03g59050.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003723 - RNA binding		
19148	_	OsRH38	_	RNA helicase 38			3	Q10RI7. LOC_Os03g06220. DEAD-box RNA helicase protein.		Os03g0158200	LOC_Os03g06220.1				GO:0005886 - plasma membrane, GO:0042542 - response to hydrogen peroxide, GO:0006457 - protein folding, GO:0016973 - poly(A)+ mRNA export from nucleus, GO:0005737 - cytoplasm, GO:0005635 - nuclear envelope, GO:0005524 - ATP binding, GO:0003724 - RNA helicase activity, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity, GO:0008186 - RNA-dependent ATPase activity, GO:0010286 - heat acclimation, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009644 - response to high light intensity		
19149	_	OsRH39	_	RNA helicase 39			1	Q5VRY0. LOC_Os01g08930. DEAD-box RNA helicase protein. GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis. GO:1901259: chloroplast rRNA processing.		Os01g0184500	LOC_Os01g08930.1				GO:0070180 - LSU rRNA binding, GO:0009658 - chloroplast organization, GO:0005524 - ATP binding, GO:0009507 - chloroplast, GO:0006399 - tRNA metabolic process, GO:0008026 - ATP-dependent helicase activity		
19150	_	OsRH40, DRH1	_	RNA helicase 40			11	LOC_Os11g46240. DEAD-box RNA helicase protein. 		Os11g0689400	LOC_Os11g46240.1				GO:0003676 - nucleic acid binding, GO:0004386 - helicase activity, GO:0005524 - ATP binding		
19151	_	OsRH41	_	RNA helicase 41			2	Q0E2Z7. LOC_Os02g10770. DEAD-box RNA helicase protein. 		Os02g0201900	LOC_Os02g10770.2				GO:0008026 - ATP-dependent helicase activity, GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
19152	_	OsRH45	_	RNA helicase 45			8	Q0J7Y8. LOC_Os08g05810. DEAD-box RNA helicase protein. 		Os08g0154200	LOC_Os08g05810.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0004386 - helicase activity		
19153	_	OsRH47A	_	RNA helicase 47A			2	Q6H874. LOC_Os02g42406. DEAD-box RNA helicase protein. 		Os02g0636300	LOC_Os02g42406.1				GO:0005524 - ATP binding, GO:0003723 - RNA binding, GO:0004386 - helicase activity		
19154	_	OsRH47B	_	RNA helicase 47B			3	Q10PV9. LOC_Os03g12000. DEAD-box RNA helicase protein. 		Os03g0219700	LOC_Os03g12000.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0004386 - helicase activity		
19155	_	OsRH48	_	RNA helicase 48			2	Q6K7R9. LOC_Os02g57980. DEAD-box RNA helicase protein. 		Os02g0826100	LOC_Os02g57980.1				GO:0003723 - RNA binding, GO:0005524 - ATP binding, GO:0004386 - helicase activity		
19156	_	OsRH50, OsBIRH1	_	RNA helicase 50, BTH-induced RNA helicase 1			3	Q0DVX2. LOC_Os03g01830. BI118654. DEAD-box RNA helicase protein. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0108600	LOC_Os03g01830.1				GO:0004004 - ATP-dependent RNA helicase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0051707 - response to other organism, GO:0009607 - response to biotic stimulus, GO:0006979 - response to oxidative stress, GO:0071446 - cellular response to salicylic acid stimulus, GO:0071395 - cellular response to jasmonic acid stimulus, GO:0071369 - cellular response to ethylene stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016226 - iron-sulfur cluster assembly, GO:0010103 - stomatal complex morphogenesis, GO:0009817 - defense response to fungus, incompatible interaction, GO:0009793 - embryonic development ending in seed dormancy, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0006968 - cellular defense response, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0006399 - tRNA metabolic process, GO:0006364 - rRNA processing, GO:0005524 - ATP binding, GO:0003724 - RNA helicase activity, GO:0003723 - RNA binding	TO:0000112 - disease resistance, TO:0002657 - oxidative stress	
19157	NRFG5	OsRH51, RH51, OsNRFG5	NEO-TETRAPLOID RICE FERTILITY RELATED GENE 5	RNA helicase 51, neo-tetraploid rice fertility related gene 5			6	Q0DBS1. DEAD-box RNA helicase protein. 	 Character as QTL - Yield and productivity,  Seed - Morphological traits,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - panicle	Os06g0535100	LOC_Os06g34420.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003723 - RNA binding	TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000592 - 1000-dehulled grain weight, TO:0000447 - filled grain number, TO:0000421 - pollen fertility, TO:0000455 - seed set percent, TO:0000371 - yield trait	
19158	NRFG4	OsRH52A, RH52A, OsNRFG4	NEO-TETRAPLOID RICE FERTILITY RELATED GENE 4	RNA helicase 52A, neo-tetraploid rice fertility related gene 4		nrfg4, rh52a, rh52a-m1, rh52a-m2	6	Q0DB53. DEAD-box RNA helicase protein. 	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Reproductive organ	Os06g0602400	LOC_Os06g40020.1				GO:0007292 - female gamete generation, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0048314 - embryo sac morphogenesis, GO:0009553 - embryo sac development, GO:0003723 - RNA binding, GO:0004386 - helicase activity	TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000447 - filled grain number, TO:0000421 - pollen fertility, TO:0000358 - female sterility, TO:0000371 - yield trait, TO:0000455 - seed set percent, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height	PO:0020094 - plant egg cell , PO:0009072 - plant ovary , PO:0025395 - floral organ , PO:0007621 - megagametophyte development stage 
19159	_	OsRH52B, RH52B, RBP-100	_	RNA helices 52B, DEAD-box ATP-dependent RNA helices 52B, RNA-binding RBP-100			7	Q6Z4K6. LOC_Os07g10250. DEAD-box RNA helicase protein. 		Os07g0202100	LOC_Os07g10250.1				GO:0005524 - ATP binding, GO:0004386 - helicase activity, GO:0003723 - RNA binding		
19160	_	OsRH52C	_	RNA helicase 52C			11	Q2R1M8. LOC_Os11g38670. DEAD-box RNA helicase protein. 		Os11g0599500	LOC_Os11g38670.1				GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19161	_	OsRH53	_	RNA helicase 53			7	Q0D8N0. LOC_Os07g05050. DEAD-box RNA helicase protein. 		Os07g0143700	LOC_Os07g05050.1, LOC_Os07g05050.2, LOC_Os07g05050.3				GO:0004386 - helicase activity, GO:0005524 - ATP binding, GO:0003723 - RNA binding		
19162	_	OsRH57	_	RNA helicase 57			7	Q5K5B6. LOC_Os07g45360. DEAD-box RNA helicase protein. 		Os07g0647900	LOC_Os07g45360.1				GO:0005524 - ATP binding, GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0003723 - RNA binding, GO:0008026 - ATP-dependent helicase activity		
19163	RH58	OsRH58	RNA HELICASE 58	RNA helicase 58	RNA HELICASE 58		1	Q0JFN7. DEAD-box RNA helicase protein. TO:0000905: seed yield trait.	 Tolerance and resistance - Stress tolerance	Os01g0970600	LOC_Os01g73900.1				GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0008026 - ATP-dependent helicase activity, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0032544 - plastid translation, GO:0009737 - response to abscisic acid stimulus, GO:0009411 - response to UV, GO:0009409 - response to cold, GO:0009408 - response to heat	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000160 - UV light sensitivity, TO:0000207 - plant height	
19164	_	mog-4	_				3	LOC_Os03g17432. DEAD-box RNA helicase protein. 		Os03g0282700	LOC_Os03g17432.1				GO:0004386 - helicase activity		
19165	CER7	OsCER7	ECERIFERUM 7	ECERIFERUM7			2	wax synthesis related gene.	 Biochemical character	Os02g0550700	LOC_Os02g34570.1, LOC_Os02g34570.2				GO:0043928 - exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay, GO:0000176 - nuclear exosome (RNase complex), GO:0071028 - nuclear mRNA surveillance, GO:0000177 - cytoplasmic exosome (RNase complex), GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process, GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5', GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process, GO:0034473 - U1 snRNA 3'-end processing, GO:0034475 - U4 snRNA 3'-end processing, GO:0034476 - U5 snRNA 3'-end processing, GO:0016075 - rRNA catabolic process, GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process		
19166	CER4	OsCER4, OsFAR3, FAR3	ECERIFERUM 4	ECERIFERUM4, Fatty acyl-CoA reductase 3	FATTY ACYL-COA REDUCTASE 3		4	wax synthesis related gene. GO:0102965: alcohol-forming long-chain fatty acyl-CoA reductase activity. GO:0035336: long-chain fatty-acyl-CoA metabolic process. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0354600	LOC_Os04g28620.1				GO:0009409 - response to cold, GO:0010345 - suberin biosynthetic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0005737 - cytoplasm, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
19167	PAS2	OsPAS2	PASTICCINO 2	PASTICCINO2			4	Q7XSZ4. wax synthesis related gene.	 Biochemical character	Os04g0271200	LOC_Os04g20280.2, LOC_Os04g20280.1				GO:0016829 - lyase activity, GO:0007275 - multicellular organismal development, GO:0006633 - fatty acid biosynthetic process, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane		
19168	CCT1	OsCCT01, CCT01, OsCMF1	CCT DOMAIN GENE 1	CCT domain-containing gene 1, CCT (CO, CO-LIKE and TOC1) domain protein 1, CCT domain protein 1, CCT MOTIF FAMILY (CMF) gene 1	CCT DOMAIN PROTEIN 1		1	OsCCT01 acted as a negative regulator upstream of Ehd1 in the photoperiod flowering pathway under SD and LD.	 Reproductive organ - Heading date	Os01g0835700	LOC_Os01g61900.1				GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0048573 - photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0048587 - regulation of short-day photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
19169	DHD4	OsCCT02, OsCCT2, OsCMF2, OsSTA46, OsDHD4, CCT02, CCT2, CMF2, STA46	DELAYED HEADING DATE 4 	CCT domain-containing gene 2, CCT (CO, CO-LIKE and TOC1) domain protein 2, CCT domain protein 2, CCT MOTIF FAMILY (CMF) gene 2, Delayed Heading Date 4	CCT DOMAIN PROTEIN 2	dhd4	2	a mature anther-preferentially expressed gene. a CONSTANS-like family transcription factor.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Heading date	Os02g0110100	LOC_Os02g01990.1				GO:0007623 - circadian rhythm, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048573 - photoperiodism, flowering, GO:0005634 - nucleus	TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0009066 - anther 
19170	CMF3	OsCCT03, CCT03, OsCCT3, CCT3, OsCMF3	CCT MOTIF FAMILY GENE 3	CCT domain-containing gene 3, CCT (CO, CO-LIKE and TOC1) domain protein 3, CCT domain protein 3, CCT MOTIF FAMILY (CMF) gene 3	CCT MOTIF FAMILY PROTEIN 3	oscct03, oscct03-1, oscct03-2	2		 Vegetative organ - Culm,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Coloration - Chlorophyll,  Reproductive organ - Heading date	Os02g0148000	LOC_Os02g05470.1, LOC_Os02g05470.2				GO:0007623 - circadian rhythm, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0009648 - photoperiodism	TO:0000456 - spikelet number, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000229 - photoperiod sensitivity	
19171	CCT10	OsCCT10, OsCMF4, CMF4, DLN75, OsDLN75	CCT DOMAIN-CONTAINING GENE 10	CCT domain-containing gene 10, CCT (CO, CO-LIKE and TOC1) domain protein 10, CCT domain protein 10, CCT MOTIF FAMILY (CMF) gene 4, DLN repressor 75, DLN motif protein 75	CCT DOMAIN-CONTAINING PROTEIN 10		3			Os03g0139500	LOC_Os03g04620.4, LOC_Os03g04620.3, LOC_Os03g04620.2, LOC_Os03g04620.1				GO:0007623 - circadian rhythm		
19172	CCT17	OsCCT17, OsCMF5, CMF5	_	CCT domain-containing gene 17, CCT (CO, CO-LIKE and TOC1) domain protein 17, CCT domain protein 17, CCT MOTIF FAMILY (CMF) gene 5			5			Os05g0466100	LOC_Os05g38990.1				GO:0007623 - circadian rhythm		
19173	CCT25	OsCCT25, OsCMF7, CMF7	CCT DOMAIN PROTEIN 25	CCT domain-containing gene 25, CCT (CO, CO-LIKE and TOC1) domain protein 25, CCT domain protein 25, CCT MOTIF FAMILY (CMF) gene 7	CCT DOMAIN PROTEIN 25		6			Os06g0699600	LOC_Os06g48610.1				GO:0007623 - circadian rhythm		
19174	_	OsCCT34, OsCMF10, CO9	_	CCT domain-containing gene 34, CCT (CO, CO-LIKE and TOC1) domain protein 34, CCT domain protein 34, CCT MOTIF FAMILY (CMF) gene 10, CONSTANS-like protein CO9			10	LOC_Os10g32900. 		Os10g0466500	LOC_Os10g32900.1, LOC_Os10g32900.2						
19175	CMF11	OsCCT35, CCT35, OsCMF11, OsH, DLN240, OsDLN240	CCT MOTIF FAMILY GENE 11	CCT domain-containing gene 35, CCT (CO, CO-LIKE and TOC1) domain protein 35, CCT domain protein 35, CCT MOTIF FAMILY (CMF) gene 11, CONSTANS-like gene H, DLN repressor 240, DLN motif protein 240	CCT MOTIF FAMILY PROTEIN 11		10			Os10g0560400	LOC_Os10g41100.1				GO:0009909 - regulation of flower development, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0009416 - response to light stimulus		
19176	CCT36	OsCCT36, OsCMF12, CMF12, OsRpp30, Rpp30	CCT DOMAIN PROTEIN 36	CCT domain-containing gene 36, CCT (CO, CO-LIKE and TOC1) domain protein 36, CCT domain protein 36, CCT MOTIF FAMILY (CMF) gene 12, RNase P protein subunit Rpp30, RNase P protein 30	CCT DOMAIN PROTEIN 36	osrpp30	10	GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance	Os11g0101200	LOC_Os11g01074.5, LOC_Os11g01074.4, LOC_Os11g01074.1, LOC_Os11g01074.2, LOC_Os11g01074.3				GO:0009909 - regulation of flower development, GO:0007623 - circadian rhythm, GO:0045087 - innate immune response, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0002238 - response to molecule of fungal origin	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
19177	CCT37	OsCCT37	CCT DOMAIN GENE 37	CCT domain-containing gene 37, CCT (CO, CO-LIKE and TOC1) domain protein 37, CCT domain protein 37	CCT DOMAIN PROTEIN 37		11			Os11g0101400	LOC_Os11g01100.1				GO:0007623 - circadian rhythm		
19178	CCT39	OsCCT39, OsCMF13, CMF13, OsRpp30-L, Rpp30-L	CCT DOMAIN PROTEIN 39	CCT domain-containing gene 39, CCT (CO, CO-LIKE and TOC1) domain protein 39, CCT domain protein 39, CCT MOTIF FAMILY (CMF) gene 13, OsRpp30-longer, RNase P protein subunit Rpp30-longer	CCT DOMAIN PROTEIN 39		12	one of two paralogs of OsRpp30.		Os12g0101000	LOC_Os12g01060.1, LOC_Os12g01080.1				GO:0004540 - ribonuclease activity, GO:0008033 - tRNA processing		
19179	_	OsCCT40	_	CCT domain-containing gene 40, CCT (CO, CO-LIKE and TOC1) domain protein 40, CCT domain protein 40			12	LOC_Os12g01100.		Os12g0101200	LOC_Os12g01100.1						
19180	CMF14	OsCCT41, CCT41, OsCMF14	CCT MOTIF FAMILY GENE 14	CCT domain-containing gene 41, CCT (CO, CO-LIKE and TOC1) domain protein 41, CCT domain protein 41, CCT MOTIF FAMILY (CMF) gene 14	CCT MOTIF FAMILY PROTEIN 14	oscct41	12		 Reproductive organ - Heading date,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0262400	LOC_Os12g16160.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048576 - positive regulation of short-day photoperiodism, flowering	TO:0000207 - plant height, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000456 - spikelet number	
19181	_	OsCMF9, CMF9	_	CCT MOTIF FAMILY (CMF) gene 9			8	LOC_Os08g02620 (not found in MSU Rice Genome Annotation Project Release 7 data).									
19182	SE13	Se13, OsHY2, OsGUN3, GUN3, PS13	PHOTOSENSITIVITY 13	Genome uncoupled 3, Photoperiod-sensitivity-13		se13	1	phytochromobilin synthase. Under LD, Se13 is involved in a genetic photoperiodic flowering pathway that includes Hd1 and Ghd7.	 Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os01g0949400	LOC_Os01g72090.2, LOC_Os01g72090.1				GO:0048573 - photoperiodism, flowering, GO:0050619 - phytochromobilin:ferredoxin oxidoreductase activity, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0050897 - cobalt ion binding, GO:0010024 - phytochromobilin biosynthetic process, GO:0048543 - phytochrome chromophore biosynthetic process	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000371 - yield trait, TO:0000152 - panicle number	
19183	MTD1	Osmtd1	MULTI-TILLERING AND DWARF 1	multi-tillering and dwarf mutant 1	osmtd1		8	a putative inhibitor I family protein.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Biochemical character	Os08g0441300	LOC_Os08g34258.1				GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009611 - response to wounding	TO:0000207 - plant height, TO:0000346 - tiller number	
19185	_	OsBAK1-10	_	bri1-associated receptor kinase 1 (BAK1) homologue 10			3	LOC_Os03g16010.	 Biochemical character	Os03g0266800	LOC_Os03g16010.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
19186	SCP1	OsSCP1	SERINE CARBOXYPEPTIDASE 1	Serine carboxypeptidase 1	SERINE CARBOXYPEPTIDASE 1		1	LOC_Os01g06490. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0158200	LOC_Os01g06490.1, LOC_Os01g06490.2				GO:0004185 - serine-type carboxypeptidase activity		
19187	SCP2	OsSCP2, SCP3, OsSCP3	SERINE CARBOXYPEPTIDASE 2	Serine carboxypeptidase 2, Serine Carboxypeptidase 3	SERINE CARBOXYPEPTIDASE 2		1	LOC_Os01g11670. SCPL (serine carboxypeptidase-like) protein.Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0215100	LOC_Os01g11670.1				GO:0004185 - serine-type carboxypeptidase activity		
19188	SCP3	OsSCP3	SERINE CARBOXYPEPTIDASE 3	Serine carboxypeptidase 3	SERINE CARBOXYPEPTIDASE 3		1	LOC_Os01g22980. SCPL (serine carboxypeptidase-like) protein.	 Biochemical character	Os01g0332800	LOC_Os01g22980.1, LOC_Os01g22980.2				GO:0004185 - serine-type carboxypeptidase activity		
19189	SCP4	OsSCP4	SERINE CARBOXYPEPTIDASE 4	Serine carboxypeptidase 4	SERINE CARBOXYPEPTIDASE 4		1	LOC_Os01g43890. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0629600	LOC_Os01g43890.1				GO:0004185 - serine-type carboxypeptidase activity		
19190	SCP5	OsSCP5	SERINE CARBOXYPEPTIDASE 5	Serine carboxypeptidase 5	SERINE CARBOXYPEPTIDASE 5		1	LOC_Os01g61690. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os01g0833500	LOC_Os01g61690.1				GO:0004185 - serine-type carboxypeptidase activity		
19191	SCP7	OsSCP7	SERINE CARBOXYPEPTIDASE 7	Serine carboxypeptidase 7	SERINE CARBOXYPEPTIDASE 7		2	LOC_Os02g26480. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0463500	LOC_Os02g26480.1, LOC_Os02g26480.2				GO:0004185 - serine-type carboxypeptidase activity		
19192	SCP8	OsSCP8	SERINE CARBOXYPEPTIDASE 8	Serine carboxypeptidase 8	SERINE CARBOXYPEPTIDASE 8		2	LOC_Os02g42310. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0634700	LOC_Os02g42310.1, LOC_Os02g42310.2, LOC_Os02g42310.3, LOC_Os02g42310.4				GO:0004185 - serine-type carboxypeptidase activity		
19193	SCP9	OsSCP9	SERINE CARBOXYPEPTIDASE 9	Serine carboxypeptidase 9	SERINE CARBOXYPEPTIDASE 9		2	LOC_Os02g46260. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os02g0687900	LOC_Os02g46260.1, LOC_Os02g46260.2, LOC_Os02g46260.3, LOC_Os02g46260.4, LOC_Os02g46260.5, LOC_Os02g46260.6				GO:0004185 - serine-type carboxypeptidase activity		
19194	SCP11	OsSCP11	SERINE CARBOXYPEPTIDASE 11	Serine carboxypeptidase 11	SERINE CARBOXYPEPTIDASE 11		3	LOC_Os03g09190. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0192100	LOC_Os03g09190.1, LOC_Os03g09190.2				GO:0004185 - serine-type carboxypeptidase activity		
19195	SCP12	OsSCP12	SERINE CARBOXYPEPTIDASE 12	Serine carboxypeptidase 12	SERINE CARBOXYPEPTIDASE 12		3	LOC_Os03g26920. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0386700	LOC_Os03g26920.1				GO:0004185 - serine-type carboxypeptidase activity		
19196	SCP13	OsSCP13	SERINE CARBOXYPEPTIDASE 13	Serine carboxypeptidase 13	SERINE CARBOXYPEPTIDASE 13		3	LOC_Os03g26930. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0386800	LOC_Os03g26930.1				GO:0004185 - serine-type carboxypeptidase activity		
19197	SCP14	OsSCP14	SERINE CARBOXYPEPTIDASE 14	Serine carboxypeptidase 14	SERINE CARBOXYPEPTIDASE 14		3	LOC_Os03g27480. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0392600	LOC_Os03g27480.1, LOC_Os03g27480.2				GO:0004185 - serine-type carboxypeptidase activity		
19198	SCP15	OsSCP15	SERINE CARBOXYPEPTIDASE 15	Serine carboxypeptidase 15	SERINE CARBOXYPEPTIDASE 15		3	LOC_Os03g27510. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393066	LOC_Os03g27510.1				GO:0004185 - serine-type carboxypeptidase activity		
19199	SCP16	OsSCP16	SERINE CARBOXYPEPTIDASE 16	Serine carboxypeptidase 16	SERINE CARBOXYPEPTIDASE 16		3	LOC_Os03g27530. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393100	LOC_Os03g27530.1				GO:0004185 - serine-type carboxypeptidase activity		
19200	SCP17	OsSCP17	SERINE CARBOXYPEPTIDASE 17	Serine carboxypeptidase 17	SERINE CARBOXYPEPTIDASE 17		3	LOC_Os03g27550. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393375	LOC_Os03g27550.1				GO:0004185 - serine-type carboxypeptidase activity		
19201	SCP18	OsSCP18	SERINE CARBOXYPEPTIDASE 18	Serine carboxypeptidase 18	SERINE CARBOXYPEPTIDASE 18		3	LOC_Os03g27590. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0393700	LOC_Os03g27590.1, LOC_Os03g27590.2, LOC_Os03g27590.3				GO:0004185 - serine-type carboxypeptidase activity		
19202	SCP19	OsSCP19	SERINE CARBOXYPEPTIDASE 19	Serine carboxypeptidase 19	SERINE CARBOXYPEPTIDASE 19		3	LOC_Os03g52040. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0730400	LOC_Os03g52040.1, LOC_Os03g52040.2, LOC_Os03g52040.3				GO:0004185 - serine-type carboxypeptidase activity		
19203	SCP20	OsSCP20	SERINE CARBOXYPEPTIDASE 20	Serine carboxypeptidase 20	SERINE CARBOXYPEPTIDASE 20		3	LOC_Os03g52070. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0730500	LOC_Os03g52070.1, LOC_Os03g52070.2, LOC_Os03g52070.3				GO:0004185 - serine-type carboxypeptidase activity		
19204	SCP21	OsSCP21	SERINE CARBOXYPEPTIDASE 21	Serine carboxypeptidase 21	SERINE CARBOXYPEPTIDASE 21		3	LOC_Os03g52080. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os03g0730700	LOC_Os03g52080.1				GO:0004185 - serine-type carboxypeptidase activity		
19205	SCP22	OsSCP22	SERINE CARBOXYPEPTIDASE 22	Serine carboxypeptidase 22	SERINE CARBOXYPEPTIDASE 22		4	LOC_Os04g09720. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0176400	LOC_Os04g09720.1, LOC_Os04g09720.2				GO:0004185 - serine-type carboxypeptidase activity		
19206	SCP23	OsSCP23	SERINE CARBOXYPEPTIDASE 23	Serine carboxypeptidase 23	SERINE CARBOXYPEPTIDASE 23		4	LOC_Os04g25560. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0321700	LOC_Os04g25560.1, LOC_Os04g25560.2				GO:0004185 - serine-type carboxypeptidase activity		
19207	SCP24	OsSCP24	SERINE CARBOXYPEPTIDASE 24	Serine carboxypeptidase 24	SERINE CARBOXYPEPTIDASE 24		4	LOC_Os04g32540. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0396800	LOC_Os04g32540.1, LOC_Os04g32540.2				GO:0004185 - serine-type carboxypeptidase activity		
19208	SCP25	OsSCP25	SERINE CARBOXYPEPTIDASE 25	Serine carboxypeptidase 25	SERINE CARBOXYPEPTIDASE 25		4	LOC_Os04g44410. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os04g0525700	LOC_Os04g44410.1				GO:0005576 - extracellular region, GO:0004185 - serine-type carboxypeptidase activity		
19209	SCP29	OsSCP29	SERINE CARBOXYPEPTIDASE 29	Serine carboxypeptidase 29	SERINE CARBOXYPEPTIDASE 29		5	LOC_Os05g50570. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os05g0582500	LOC_Os05g50570.1				GO:0004185 - serine-type carboxypeptidase activity		
19210	SCP30	OsSCP30	SERINE CARBOXYPEPTIDASE 30	Serine carboxypeptidase 30	SERINE CARBOXYPEPTIDASE 30		5	LOC_Os05g50580. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os05g0582600	LOC_Os05g50580.1				GO:0004185 - serine-type carboxypeptidase activity		
19211	SCP31	OsSCP31	SERINE CARBOXYPEPTIDASE 31	Serine carboxypeptidase 31	SERINE CARBOXYPEPTIDASE 31		5	LOC_Os05g50600. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os05g0582800	LOC_Os05g50600.1				GO:0004185 - serine-type carboxypeptidase activity		
19212	SCP32	OsSCP32	SERINE CARBOXYPEPTIDASE 32	Serine carboxypeptidase 32	SERINE CARBOXYPEPTIDASE 32		6	LOC_Os06g08720. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0186400	LOC_Os06g08720.1, LOC_Os06g08720.2, LOC_Os06g08720.3				GO:0005576 - extracellular region, GO:0004185 - serine-type carboxypeptidase activity, GO:0005773 - vacuole, GO:0019932 - second-messenger-mediated signaling		
19213	SCP33	OsSCP33	SERINE CARBOXYPEPTIDASE 33	Serine carboxypeptidase 33	SERINE CARBOXYPEPTIDASE 33		6	LOC_Os06g13410. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0242100	LOC_Os06g13410.1				GO:0008168 - methyltransferase activity		
19214	SCP34	OsSCP34	SERINE CARBOXYPEPTIDASE 34	Serine carboxypeptidase 34	SERINE CARBOXYPEPTIDASE 34		6	LOC_Os06g13420. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os06g13420						
19215	SCP35	OsSCP35	SERINE CARBOXYPEPTIDASE 35	Serine carboxypeptidase 35	SERINE CARBOXYPEPTIDASE 35		6	LOC_Os06g32740. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0519700	LOC_Os06g32740.1						
19216	SCP36	OsSCP36	SERINE CARBOXYPEPTIDASE 36	Serine carboxypeptidase 36	SERINE CARBOXYPEPTIDASE 36		6	LOC_Os06g32770. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os06g32770						
19217	SCP37	OsSCP37	SERINE CARBOXYPEPTIDASE 37	Serine carboxypeptidase 37	SERINE CARBOXYPEPTIDASE 37		6	LOC_Os06g36570. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0561100	LOC_Os06g36570.1				GO:0004185 - serine-type carboxypeptidase activity		
19218	SCP38	OsSCP38	SERINE CARBOXYPEPTIDASE 38	Serine carboxypeptidase 38	SERINE CARBOXYPEPTIDASE 38		6	LOC_Os06g51370. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os06g0730000	LOC_Os06g51370.1				GO:0004185 - serine-type carboxypeptidase activity		
19219	SCP40	OsSCP40	SERINE CARBOXYPEPTIDASE 40	Serine carboxypeptidase 40	SERINE CARBOXYPEPTIDASE 40		7	LOC_Os07g46350. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os07g0656900	LOC_Os07g46350.1				GO:0004185 - serine-type carboxypeptidase activity		
19220	SCP41	OsSCP41	SERINE CARBOXYPEPTIDASE 41	Serine carboxypeptidase 41	SERINE CARBOXYPEPTIDASE 41		8	LOC_Os08g44640. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os08g0560500	LOC_Os08g44640.1, LOC_Os08g44640.2, LOC_Os08g44640.3				GO:0004185 - serine-type carboxypeptidase activity		
19221	SCP42	OsSCP42	SERINE CARBOXYPEPTIDASE 42	Serine carboxypeptidase 42	SERINE CARBOXYPEPTIDASE 42		9	SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os09g0462875/Os09g0462901	LOC_Os09g28830.1				GO:0004185 - serine-type carboxypeptidase activity		
19222	SCP43	OsSCP43	SERINE CARBOXYPEPTIDASE 43	Serine carboxypeptidase 43	SERINE CARBOXYPEPTIDASE 43		9	LOC_Os09g28840. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os09g0463100	LOC_Os09g28840.1						
19223	SCP44	OsSCP44	SERINE CARBOXYPEPTIDASE 44	Serine carboxypeptidase 44	SERINE CARBOXYPEPTIDASE 44		10	LOC_Os10g01110. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os10g0101100	LOC_Os10g01110.1				GO:0019748 - secondary metabolic process, GO:0004185 - serine-type carboxypeptidase activity		
19224	SCP45	OsSCP45, OsSCP46, SCP46	SERINE CARBOXYPEPTIDASE 45	Serine carboxypeptidase 45, Serine carboxypeptidase 46	SERINE CARBOXYPEPTIDASE 45		10	SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0101200	LOC_Os10g01134.1, LOC_Os10g01134.2				GO:0004185 - serine-type carboxypeptidase activity, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion, GO:0046689 - response to mercury ion	TO:0000034 - chromium sensitivity	
19225	SCP47	OsSCP47	SERINE CARBOXYPEPTIDASE 47	Serine carboxypeptidase 47	SERINE CARBOXYPEPTIDASE 47		10	LOC_Os10g39560. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os10g0541600	LOC_Os10g39560.1				GO:0004185 - serine-type carboxypeptidase activity		
19226	SCP48	OsSCP48	SERINE CARBOXYPEPTIDASE 48	Serine carboxypeptidase 48	SERINE CARBOXYPEPTIDASE 48		11	LOC_Os11g10750. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0213600	LOC_Os11g10750.1				GO:0004185 - serine-type carboxypeptidase activity		
19227	SCP49	OsSCP49, OsSCP50, SCP50	SERINE CARBOXYPEPTIDASE 49	Serine carboxypeptidase 49, Serine carboxypeptidase 50	SERINE CARBOXYPEPTIDASE 49		11	LOC_Os11g24180. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0430000	LOC_Os11g24180.1				GO:0004185 - serine-type carboxypeptidase activity		
19228	SCP51	OsSCP51	SERINE CARBOXYPEPTIDASE 51	Serine carboxypeptidase 51	SERINE CARBOXYPEPTIDASE 51		11	LOC_Os11g24290. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0431100	LOC_Os11g24290.1				GO:0004185 - serine-type carboxypeptidase activity		
19229	SCP52	OsSCP52	SERINE CARBOXYPEPTIDASE 52	Serine carboxypeptidase 52	SERINE CARBOXYPEPTIDASE 52		11	LOC_Os11g24320. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os11g24320				GO:0004185 - serine-type carboxypeptidase activity		
19230	SCP53	OsSCP53	SERINE CARBOXYPEPTIDASE 53	Serine carboxypeptidase 53	SERINE CARBOXYPEPTIDASE 53		11	LOC_Os11g24340. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0431400	LOC_Os11g24340.1				GO:0004185 - serine-type carboxypeptidase activity		
19231	SCP54	OsSCP54, OsSCP55, SCP55	SERINE CARBOXYPEPTIDASE 54	Serine carboxypeptidase 54, Serine carboxypeptidase 55	SERINE CARBOXYPEPTIDASE 54		11	LOC_Os11g24374. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0431700	LOC_Os11g24374.1				GO:0004185 - serine-type carboxypeptidase activity		
19232	SCP56	OsSCP56	SERINE CARBOXYPEPTIDASE 56	Serine carboxypeptidase 56	SERINE CARBOXYPEPTIDASE 56		11	LOC_Os11g24510. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0432900	LOC_Os11g24510.1, LOC_Os11g24510.2, LOC_Os11g24510.3				GO:0004185 - serine-type carboxypeptidase activity		
19233	SCP57	OsSCP57, OsSCP58, SCP58	SERINE CARBOXYPEPTIDASE 57	Serine carboxypeptidase 57, Serine carboxypeptidase 58	SERINE CARBOXYPEPTIDASE 57		11	LOC_Os11g27170. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character		LOC_Os11g27170				GO:0004185 - serine-type carboxypeptidase activity		
19234	SCP59	OsSCP59, OsSCP60, SCP60	SERINE CARBOXYPEPTIDASE 59	Serine carboxypeptidase 59, Serine carboxypeptidase 60	SERINE CARBOXYPEPTIDASE 59		11	LOC_Os11g27264. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0460800	LOC_Os11g27264.1, LOC_Os11g27264.2				GO:0004185 - serine-type carboxypeptidase activity		
19235	SCP61	OsSCP61, OsSCP62, SCP62	SERINE CARBOXYPEPTIDASE 61	Serine carboxypeptidase 61, Serine carboxypeptidase 62	SERINE CARBOXYPEPTIDASE 61		11	LOC_Os11g27329. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0461000	LOC_Os11g27329.1, LOC_Os11g27329.2, LOC_Os11g27329.3, LOC_Os11g27329.4, LOC_Os11g27329.5, LOC_Os11g27329.6				GO:0004185 - serine-type carboxypeptidase activity		
19236	SCP63	OsSCP63	SERINE CARBOXYPEPTIDASE 63	Serine carboxypeptidase 63	SERINE CARBOXYPEPTIDASE 63		11	LOC_Os11g31980. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0522900	LOC_Os11g31980.1				GO:0004185 - serine-type carboxypeptidase activity		
19237	SCP64	OsSCP64	SERINE CARBOXYPEPTIDASE 64	Serine carboxypeptidase 64	SERINE CARBOXYPEPTIDASE 64		11	LOC_Os11g42390. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os11g0643400	LOC_Os11g42390.1				GO:0004185 - serine-type carboxypeptidase activity		
19238	SCP66	OsSCP66	SERINE CARBOXYPEPTIDASE 66	Serine carboxypeptidase 66	SERINE CARBOXYPEPTIDASE 66		12	LOC_Os12g39170. SCPL (serine carboxypeptidase-like) protein. Serine Carboxypeptidase Family (Peptidase_S10; PF00450). http://rice.plantbiology.msu.edu/ca/gene_fams/27_76.shtml	 Biochemical character	Os12g0581400	LOC_Os12g39170.1				GO:0004185 - serine-type carboxypeptidase activity		
19239	_		_	Os3378 Transposase			5	Os3378 Transposase encoded by MULE Os3378-1 (AP008211: 1334664 to 18339057). LOC_Os05g31510.	 Other	Os05g0379100	LOC_Os05g31510.1						
19240	_		_	Os3378 Transposase			4	Os3378 Transposase encoded by MULE Os3378-2 (AP008210: 16795928-16800322) or MULE Os3378-3 (AP008210: 16760748-16756355). LOC_Os04g28290.	 Other	Os04g0350900	LOC_Os04g28290.1						
19241	_		_	Os3378 Transposase			4	Os3378 Transposase encoded by MULE Os3378-2 (AP008210: 16795928-16800322) or MULE Os3378-3 (AP008210: 16760748-16756355). LOC_Os04g28350.	 Other	Os04g0351600	LOC_Os04g28350.1						
19242	_		_	Os3378 Transposase			11	Os3378 Transposase encoded by MULE Os3378-4 (AP008217: 28527877-28531720). LOC_Os11g44180.	 Other		LOC_Os11g44180				GO:0008270 - zinc ion binding		
19243	_		_	Os3378-Z transposase				cDNA from Z418 (an Oryza sativa somaclonal mutant). KJ865693.	 Other								
19244	_	Os3378-Z	_	MULE Os3378-Z				MULE Os3378 from a rice (Oryza sativa) somaclonal mutant, Z418.	 Other								
19245	_	OsrbcL1, rbcL1	_	ribulose bisphosphate carboxylase large chain 1			10		 Biochemical character	Os10g0356000	LOC_Os10g21268.1				GO:0000287 - magnesium ion binding, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0016984 - ribulose-bisphosphate carboxylase activity		
19246	_	OsPPT1, PPT1	_	prenyltransferase 1			3	LOC_Os03g09060.	 Biochemical character	Os03g0190100	LOC_Os03g09060.1				GO:0046428 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016556 - mRNA modification, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0010207 - photosystem II assembly, GO:0042372 - phylloquinone biosynthetic process, GO:0010236 - plastoquinone biosynthetic process, GO:0010103 - stomatal complex morphogenesis, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane		
19247	MSRB5	OsMSR1, MSR1, OsMSRB5	METHIONINE SULFOXIDE REDUCTASE B5	peptide methionine sulfoxidereductase 1, Methionine sulfoxide reductase B5	METHIONINE SULFOXIDE REDUCTASE B5		3	Q10L32.	 Biochemical character	Os03g0360700	LOC_Os03g24600.1				GO:0005829 - cytosol, GO:0030091 - protein repair, GO:0033743 - peptide-methionine (R)-S-oxide reductase activity, GO:0046872 - metal ion binding, GO:0005739 - mitochondrion, GO:0006979 - response to oxidative stress, GO:0009507 - chloroplast		
19248	4NPP1	Os4NPP1, OsPGLP1, PGLP1	4-NITROPHENYLPHOSPHATASE 1	4-nitrophenylphosphatase 1, Phosphoglycolate phosphatase 1	4-NITROPHENYLPHOSPHATASE 1		4		 Biochemical character	Os04g0490800	LOC_Os04g41340.1				GO:0016791 - phosphatase activity, GO:0009507 - chloroplast, GO:0009853 - photorespiration		PO:0025034 - leaf 
19249	_	OsDNLZ1, DNLZ1	_	DNL type zinc finger domain-containing protein 1			6	LOC_Os06g50870.		Os06g0724400	LOC_Os06g50870.1				GO:0008270 - zinc ion binding		
19250	SHMT1	OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT	SERINE HYDROXYMETHYLTRANSFERASE 1	serine hydroxymethyltransferase 1, chlorophyll-deficient mutant 1, serine hydroxymethyltransferase-3	SERINE HYDROXYMETHYLTRANSFERASE 1	osshm1, oscdm1	3	OsSHTM3 in Mishra et al. 2019. GO:1901002: positive regulation of response to salt stress. GO:0035999: tetrahydrofolate interconversion. TO:0006060: leaf chlorosis. 	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0738400	LOC_Os03g52840.2, LOC_Os03g52840.3, LOC_Os03g52840.1				GO:0030170 - pyridoxal phosphate binding, GO:0005737 - cytoplasm, GO:0006979 - response to oxidative stress, GO:0008168 - methyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0009760 - C4 photosynthesis, GO:0009535 - chloroplast thylakoid membrane, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042744 - hydrogen peroxide catabolic process, GO:0009735 - response to cytokinin stimulus, GO:0009853 - photorespiration, GO:0005634 - nucleus, GO:0004372 - glycine hydroxymethyltransferase activity, GO:0005739 - mitochondrion, GO:0006544 - glycine metabolic process, GO:0006563 - L-serine metabolic process, GO:0009409 - response to cold	TO:0000326 - leaf color, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content	PO:0025034 - leaf , PO:0009005 - root , PO:0009006 - shoot system 
19251	SHMT2	OsSHM2, SHM2, OsSHMT2, OsSHTM4, SHTM4	SERINE HYDROXYMETHYLTRANSFERASE 2	serine hydroxymethyltransferase 2, serine hydroxymethyltransferase-4	SERINE HYDROXYMETHYLTRANSFERASE 2		11	GO:0035999: tetrahydrofolate interconversion. OsSHTM4 in Mishra et al. 2019.	 Biochemical character	Os11g0455800	LOC_Os11g26860.1				GO:0009735 - response to cytokinin stimulus, GO:0006544 - glycine metabolic process, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0009737 - response to abscisic acid stimulus, GO:0004372 - glycine hydroxymethyltransferase activity, GO:0009753 - response to jasmonic acid stimulus	TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009005 - root 
19252	SHMT3	OsSHM3, SHM3, OsSHMT3, OsSHTM5, SHTM5	SERINE HYDROXYMETHYLTRANSFERASE 3	serine hydroxymethyltransferase 3, serine hydroxymethyltransferase-5	SERINE HYDROXYMETHYLTRANSFERASE 3		12	GO:0035999: tetrahydrofolate interconversion. CT853747, CK063929, CI307114. OsSHTM5 in Mishra et al. 2019.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0409000	LOC_Os12g22030.2, LOC_Os12g22030.1				GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042594 - response to starvation, GO:0009970 - cellular response to sulfate starvation, GO:0030170 - pyridoxal phosphate binding, GO:0006544 - glycine metabolic process, GO:0004372 - glycine hydroxymethyltransferase activity	TO:0000172 - jasmonic acid sensitivity, TO:0000007 - sulfur sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009010 - seed 
19253	CADT1	OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1, OsCADT1, FLO20, OsFLO20	CD TOLERANCE 1	serine hydroxymethyltransferase 4, serine hydroxymethyltransferase-1, Cd tolerance 1, FLOURY ENDOSPERM20, floury endosperm 20	SERINE HYDROXYMETHYLTRANSFERASE 4	cadt1, flo20-1, flo20-2, flo20-3, flo20-4, flo20-5, flo20-6, flo20-7	1	OsSHTM1 in Mishra et al. 2019. TO:0006055: selenium content. GO:0080160: selenate transport.	 Seed - Morphological traits - Endosperm,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0874900	LOC_Os01g65410.1				GO:0009960 - endosperm development, GO:0004372 - glycine hydroxymethyltransferase activity, GO:0006544 - glycine metabolic process, GO:0006563 - L-serine metabolic process, GO:0006306 - DNA methylation, GO:0009737 - response to abscisic acid stimulus, GO:0000103 - sulfate assimilation, GO:0030170 - pyridoxal phosphate binding, GO:0009753 - response to jasmonic acid stimulus, GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0008168 - methyltransferase activity, GO:0008272 - sulfate transport	TO:0000696 - starch content, TO:0002658 - starch grain synthesis, TO:0002656 - starch grain shape, TO:0000602 - total fat content, TO:0002653 - endosperm storage protein content, TO:0000598 - protein content, TO:0000104 - floury endosperm, TO:0000710 - globulin protein content, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009006 - shoot system , PO:0009010 - seed , PO:0007633 - endosperm development stage , PO:0009005 - root 
19254	SHMT5	OsSHM5, SHM5, OsSHMT5, OsSHTM2, SHTM2	SERINE HYDROXYMETHYLTRANSFERASE 5	serine hydroxymethyltransferase 5, serine hydroxymethyltransferase-2	SERINE HYDROXYMETHYLTRANSFERASE 5		5	GO:0035999: tetrahydrofolate interconversion. OsSHTM2 in Mishra et al. 2019.	 Biochemical character	Os05g0429000	LOC_Os05g35440.1, LOC_Os05g35440.2				GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0009733 - response to auxin stimulus, GO:0030170 - pyridoxal phosphate binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0008168 - methyltransferase activity, GO:0006563 - L-serine metabolic process, GO:0006544 - glycine metabolic process, GO:0004372 - glycine hydroxymethyltransferase activity	TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
19255	SRFP1	OsSRFP1, OsRING157, RING157, SDEL2, OsSDEL2	STRESS-RELATED RING FINGER PROTEIN 1	Stress-related RING Finger Protein 1, RING-type E3 ubiquitin ligase 157, SPX4 degradation E3 ligase 2	STRESS-RELATED RING FINGER PROTEIN 1	sdel2-1	3	an ortholog of  Arabidopsis MIEL1.  TO:0020102: phosphate content. PO:0030123: panicle inflorescence.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os03g0348900	LOC_Os03g22680.1, LOC_Os03g22680.2				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009628 - response to abiotic stimulus, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0009414 - response to water deprivation, GO:0055062 - phosphate ion homeostasis, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0008270 - zinc ion binding, GO:0006979 - response to oxidative stress, GO:0004842 - ubiquitin-protein ligase activity	TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000102 - phosphorus sensitivity, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000457 - total biomass yield, TO:0000276 - drought tolerance, TO:0006002 - proline content, TO:0000357 - growth and development trait, TO:0000615 - abscisic acid sensitivity	PO:0009066 - anther , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009005 - root , PO:0009049 - inflorescence 
19256	CCP1	DFO1, EMF1, OsDFO1, OsEMF1, OsCCP1	CURVED CHIMERIC PALEA 1	DEFORMED FLORAL ORGAN1, DEFORMED FLORAL ORGAN 1, EMBRYONIC FLOWER1, EMBRYONIC FLOWER 1		dfo1, dfo1-1, dfo1-2, ccp1, Osemf1	1	an ortholog of Arabidopsis EMF1. a rice epigenetic repressor. AY885887-AY885915 and DQ374801-DQ374828 (O. sativa and other wild rice species, partial cds). TO:1000024: palea morphology trait. TO:0001079: caryopsis fruit morphology trait. GO:1902464: regulation of histone H3-K27 trimethylation.	 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0229300	LOC_Os01g12890.1				GO:0040029 - regulation of gene expression, epigenetic, GO:0009908 - flower development, GO:0009741 - response to brassinosteroid stimulus, GO:0048437 - floral organ development, GO:0009742 - brassinosteroid mediated signaling, GO:0005634 - nucleus, GO:0048497 - maintenance of floral organ identity	TO:0000590 - grain weight, TO:0000614 - lemma shape, TO:0000734 - grain length, TO:0002677 - brassinosteroid sensitivity, TO:0000622 - flower development trait, TO:0000499 - flower anatomy and morphology trait, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000346 - tiller number, TO:0000397 - grain size, TO:0000152 - panicle number, TO:0000391 - seed size, TO:0000357 - growth and development trait, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield	PO:0001048 - palea development stage , PO:0007615 - flower development stage 
19257	THI2	OsTHI1, THI1, Osthi2, thi2, OsTHION1, THION1	THIONIN 2	Thionin 1, thionin 2	THIONIN 2		6	PR13 family. OsTHI1 in Ji et al. 2015. OsTHION1 in Boonpa et al. 2019.	 Tolerance and resistance	Os06g0509900	LOC_Os06g31280.1				GO:0002215 - defense response to nematode, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006952 - defense response	TO:0000615 - abscisic acid sensitivity, TO:0000384 - nematode damage resistance, TO:0000172 - jasmonic acid sensitivity	
19258	THI3	OsTHI2, THI2, Osthi3, thi3, OsTHION2, THION2	THIONIN 3	Thionin 2, thionin 3	THIONIN 3		6	PR13 family. OsTHI2 in Ji et al. 2015. OsTHION2 in Boonpa et al. 2019.	 Tolerance and resistance		LOC_Os06g31800.1				GO:0009751 - response to salicylic acid stimulus, GO:0002215 - defense response to nematode, GO:0006952 - defense response, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000384 - nematode damage resistance	
19259	_	OsTHI3, THI3, Osthi1, thi1, OsTHION3, THION3	_	Thionin 3, thionin 1	_		6	PR13 family. OsTHI3 in Ji et al. 2015. OsTHION3 in Boonpa et al. 2019.	 Tolerance and resistance	Os06g0513050	LOC_Os06g31890.1				GO:0006952 - defense response		
19260	THI5	OsTHI5, Osthi5, OsTHION5, THION5, OsTHION4, THION4	THIONIN 5	Thionin 5	THIONIN 5		6	PR13 family. OsTHION4 and OsTHION5 (*Both genes were annotated to the same locus number) in Boonpa et al. 2019.	 Tolerance and resistance	Os06g0513862	LOC_Os06g31960.1				GO:0006952 - defense response		
19261	THI6	OsTHI6, Osthi6, thi6, OsTHION6, THION6	THIONIN 6	Thionin 6	THIONIN 6		6	PR13 family.	 Tolerance and resistance	Os06g0513943	LOC_Os06g32020.1				GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006952 - defense response, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance, TO:0000615 - abscisic acid sensitivity	
19262	THI7	OsTHI7, OsTHION7, THION7	THIONIN 7	Thionin 7	THIONIN 7		6	PR13 family.	 Tolerance and resistance	Os06g0514100	LOC_Os06g32160.1				GO:0002215 - defense response to nematode, GO:0002229 - defense response to oomycetes, GO:0006952 - defense response, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000384 - nematode damage resistance	
19263	_	OsTHI8, THI8, OsTHION8, THION8	_	Thionin 8			6	PR13 family.			LOC_Os06g32200.1						
19264	THI1	OsTHI9, THI9, Osthi1, thi1, Osthi8, thi8, OsTHION9, THION9	THIONIN 1	Thionin 9, thionin 1, thionin 8	THIONIN 1		6	AB072337a. PR13 family. OsTHI9 in Ji et al. 2015. Osthi8 in Kitanaga et al. 2006. OsTHION9 in Boonpa et al. 2019.	 Tolerance and resistance	Os06g0514800	LOC_Os06g32240.1				GO:0006952 - defense response		PO:0020033 - coleoptile 
19265	THI20	OsTHI20, OsTHION20, THION20	THIONIN 20	Thionin 20	THIONIN 20		2	PR13 family.		Os02g0118500	LOC_Os02g02630.1						
19266	THI21	OsTHI21, OsTHION21, THION21	THIONIN 21	Thionin 21	THIONIN 21		2	PR13 family.		Os02g0118700	LOC_Os02g02650.1						
19267	THI26	OsTHI26, OsTHION26, THION26	THIONIN 26	Thionin 26	THIONIN 26		3	PR13 family. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0185600	LOC_Os03g08710.2, LOC_Os03g08710.1				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium	TO:0000259 - heat tolerance, TO:0000236 - crop damage resistance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	
19268	THI28	OsTHI28, OsTHION28, THION28	THIONIN 28	Thionin 28	THIONIN 28		3	PR13 family.		Os03g0337000	LOC_Os03g21880.1						
19269	THI29	OsTHI29, OsTHION29, THION29	THIONIN 29	Thionin 29	THIONIN 29		3	PR13 family. GO:0098542: defense response to other organism.	 Tolerance and resistance	Os03g0247200	LOC_Os03g14300.1					TO:0000236 - crop damage resistance	
19270	THI30	OsTHI30, OsTHION30, THION30	THIONIN 30	Thionin 30	THIONIN 30		3	PR13 family. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance	Os03g0860900	LOC_Os03g64300.1				GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000236 - crop damage resistance	
19271	THI31	OsTHI31, OsTHION31, THION31	THIONIN 31	Thionin 31	THIONIN 31		11	PR13 family.			LOC_Os11g15250.1						
19272	THI32	OsTHI32, OsTHION32, THION32	THIONIN 32	Thionin 32	THIONIN 32		9	PR13 family. GO:0098542: defense response to other organism.	 Tolerance and resistance	Os09g0409000	LOC_Os09g24350.1					TO:0000236 - crop damage resistance	
19273	THI34	OsTHI34, OsTHION34, THION34	THIONIN 34	Thionin 34	THIONIN 34		12	PR13 family. GO:0098542: defense response to other organism.	 Tolerance and resistance,  Tolerance and resistance - Disease resistance	Os12g0455000	LOC_Os12g26960.1				GO:0042742 - defense response to bacterium	TO:0000236 - crop damage resistance, TO:0000315 - bacterial disease resistance	
19274	THI36	OsTHI36, OsTHION36, THION36	THIONIN 36	Thionin 36	THIONIN 36		3	PR13 family. GO:0098542: defense response to other organism.	 Tolerance and resistance	Os03g0699800	LOC_Os03g49270.1					TO:0000236 - crop damage resistance	
19275	THI38	OsTHI38, OsTHION38, THION38	THIONIN 38	Thionin 38	THIONIN 38		3	PR13 family.		Os03g0700100	LOC_Os03g49300.1						
19276	THI39	OsTHI39, OsTHION39, THION39	THIONIN 39	Thionin 39	THIONIN 39		3	PR13 family.		Os03g0700200	LOC_Os03g49310.1						
19277	THI41	OsTHI41, OsTHION41, THION41	THIONIN 41	Thionin 41	THIONIN 41		12	PR13 family.			LOC_Os12g27020						
19278	THI4	Osthi4, thi4	THIONIN 4	thionin precursor, thionin 4	THIONIN 4		6	PR13 family.	 Tolerance and resistance	Os06g0513781	LOC_Os06g31930.1				GO:0006952 - defense response		
19279	_		_	thionin like peptide			7	LOC_Os07g24820. 		Os07g0429600	LOC_Os07g24820.1						
19280	_		_	thionin like peptide			7	LOC_Os07g24830.		Os07g0429700	LOC_Os07g24830.1						
19281	_		_	thionin like peptide			7	LOC_Os07g25050.		Os07g0432201	LOC_Os07g25050.1						
19282	_		_	thionin like peptide			7	LOC_Os07g25060.		Os07g0432333	LOC_Os07g25060.1						
19285	THI9	Osthi9, thi9, OsTHION12, THION12	THIONIN 9	thionin 9	THIONIN 9		6	OsTHION12 in Boonpa et al. 2019.			LOC_Os06g32350.1						
19286	THI10	Osthi10, thi10, OsTHION16, THION16	THIONIN 10	thionin 10	THIONIN 10		6	OsTHION16 in Boonpa et al. 2019.			LOC_Os06g32370.1						
19287	THI11	Osthi11, thi11, OsTHION14, THION14	THIONIN 11	thionin 11	THIONIN 11		6	OsTHION14 in Boonpa et al. 2019.			LOC_Os06g32550.1						
19288	THI12	Osthi12, thi12, OsTHION15, THION15	THIONIN 12	thionin 12	THIONIN 12		6	OsTHION15 in Boonpa et al. 2019.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os06g0517700	LOC_Os06g32600.1				GO:0048443 - stamen development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0042742 - defense response to bacterium	TO:0000315 - bacterial disease resistance, TO:0006022 - floral organ development trait, TO:0000276 - drought tolerance, TO:0000439 - fungal disease resistance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009010 - seed , PO:0009005 - root , PO:0009049 - inflorescence , PO:0025585 - floral organ formation stage , PO:0025034 - leaf 
19289	_	OsSTA258	_	Ankyrin, Ankyrin repeat domain containing protein			11	LOC_Os11g24840. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance	Os11g0435800	LOC_Os11g24840.1, LOC_Os11g24850.1						PO:0009066 - anther 
19290	_		_	aminotransferase			2	up-regulated after fertilization (Abiko et al. 2013).	 Tolerance and resistance - Disease resistance	Os02g0467500	LOC_Os02g26800.1				GO:0009790 - embryonic development		
19291	_		_	GMC oxidoreductase			10		 Tolerance and resistance - Disease resistance	Os10g0474900	LOC_Os10g33460.1						
19292	_	OsACO1, ACO1, OsACO2, ACO2	_	aconitase 1, aconitase 2			8	Q6YZX6. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0191100	LOC_Os08g09200.1				GO:0009651 - response to salt stress, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006099 - tricarboxylic acid cycle, GO:0003723 - RNA binding, GO:0006097 - glyoxylate cycle, GO:0009408 - response to heat, GO:0046872 - metal ion binding, GO:0003994 - aconitate hydratase activity, GO:0055072 - iron ion homeostasis, GO:0005737 - cytoplasm	TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
19293	_	FLL1	_	FLO2-LIKE1			2			Os02g0255700	LOC_Os02g15660.1						PO:0025034 - leaf , PO:0020103 - flag leaf 
19294	_	FLL2	_	FLO2-LIKE2			7		 Vegetative organ - Leaf	Os07g0422000	LOC_Os07g23990.1, LOC_Os07g23990.2						PO:0025034 - leaf , PO:0020103 - flag leaf 
19295	_	OsSEC24, OsSEC27, SEC24, SEC27	_				2	a functional SEC24-like protein. DQ434847. LOC_Os02g56500. OsSEC27 is renamed OsSEC24 because the Os02g56500 protein functionally complements SEC24 in yeast (Li et al. 2015).	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0809500	LOC_Os02g56500.1, LOC_Os02g56500.2, LOC_Os02g56500.3, LOC_Os02g56500.4, LOC_Os02g56500.5				GO:0010447 - response to acidity, GO:0010106 - cellular response to iron ion starvation	TO:0000224 - iron sensitivity, TO:0000479 - acid sensitivity	
19296	 CK2ALPHA3	OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3	_	casein kinase II alpha-subunit 3, CK2 alpha-subunit 3, CK2 alpha subunit 3			3	TO:0020102: phosphate content.	 Biochemical character	Os03g0207300	LOC_Os03g10940.1				GO:0055062 - phosphate ion homeostasis, GO:0042594 - response to starvation, GO:0010966 - regulation of phosphate transport, GO:0005524 - ATP binding, GO:0012505 - endomembrane system, GO:0004672 - protein kinase activity		PO:0009005 - root , PO:0009015 - portion of vascular tissue , PO:0006036 - root epidermis , PO:0008039 - stem base , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0020124 - root stele 
19297	CK2BETA3	CK2beta3, OsCK2beta3	_	casein kinase II beta-subunit 3, CK2 beta-subunit 3			7	TO:0020102: phosphate content.	 Biochemical character	Os07g0495100	LOC_Os07g31280.1, LOC_Os07g31280.3, LOC_Os07g31280.2				GO:0019887 - protein kinase regulator activity, GO:0055062 - phosphate ion homeostasis, GO:0016036 - cellular response to phosphate starvation, GO:0005956 - protein kinase CK2 complex, GO:0010966 - regulation of phosphate transport		
19298	DREPP2	OsDREPP2	DEVELOPMENTALLY REGULATED PLASMA MEMBRANE POLYPEPTIDE 2	developmentally regulated plasma membrane polypeptide 2	DEVELOPMENTALLY REGULATED PLASMA MEMBRANE POLYPEPTIDE 2		2	LC005750. miR5075-target.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0285300	LOC_Os02g18410.1				GO:0007026 - negative regulation of microtubule depolymerization, GO:0005516 - calmodulin binding, GO:0005509 - calcium ion binding, GO:0051716 - cellular response to stimulus, GO:0046658 - anchored to plasma membrane, GO:0051512 - positive regulation of unidimensional cell growth, GO:0009651 - response to salt stress, GO:0008017 - microtubule binding	TO:0006001 - salt tolerance	PO:0000025 - root tip 
19299	_	OsDREPP1, DREPP1, RS1	_	developmentally regulated plasma membrane polypeptide 1			2	Q0JPA6. KC611097-KC611107 (O. sativa and wild rice species, partial cds).	 Vegetative organ - Root	Os01g0233000	LOC_Os01g13210.1, LOC_Os01g13210.2				GO:0046658 - anchored to plasma membrane, GO:0051716 - cellular response to stimulus		PO:0009005 - root 
19300	_	OsCNIH1, CNIH1	_	cornichon 1			6	LOC_Os06g04500. GO:0035556: intracellular signal transduction. GO:0038024: cargo receptor activity.	 Biochemical character	Os06g0136500	LOC_Os06g04500.1, LOC_Os06g04500.2				GO:0016021 - integral to membrane, GO:0016192 - vesicle-mediated transport, GO:0016020 - membrane		
19301	_	OsCNIH2, CNIH2	_	cornichon 2			12	LOC_Os12g32180. GO:0035556: intracellular signal transduction.		Os12g0506400	LOC_Os12g32180.1				GO:0006891 - intra-Golgi vesicle-mediated transport, GO:0016020 - membrane		
19302	ELF3.2	ELF3_chr.1, OsELF3.2, ELF3.2, OsELF3-2, ELF3-2, OsELF3b, ELF3b	EARLY FLOWERING 3.2	EARLY FLOWERING3.2, ELF3 homolog 2		oself3.2, elf3-2	1	a rice ortholog of Arabidopsis gene for circadian clock component. ortholog of Arabidopsis circadian gene ELF3. an evening complex component.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os01g0566100 	LOC_Os01g38530.2, LOC_Os01g38530.1				GO:0007623 - circadian rhythm, GO:0048573 - photoperiodism, flowering, GO:0009416 - response to light stimulus, GO:0009266 - response to temperature stimulus, GO:0009408 - response to heat	TO:0000075 - light sensitivity, TO:0000259 - heat tolerance, TO:0000432 - temperature response trait, TO:0000137 - days to heading, TO:0002616 - flowering time	
19303	ELF4A	ELF4_chr.11, OsELF4a, ELF4a	EARLY FLOWERING 4A			Oself4a, Oself4a-1, Oself4a-2	11	a rice ortholog of Arabidopsis gene for circadian clock component. GO:2000028: regulation of photoperiodism, flowering.	 Reproductive organ - Heading date	Os11g0621500 	LOC_Os11g40610.1, LOC_Os11g40610.2, LOC_Os11g40610.3, LOC_Os11g40610.4, LOC_Os11g40610.5				GO:0048573 - photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0048578 - positive regulation of long-day photoperiodism, flowering	TO:0002616 - flowering time, TO:0000137 - days to heading	
19304	ELF4	ELF4_chr.8, OsELF4c, ELF4c	EARLY FLOWERING 4C				8	a rice ortholog of Arabidopsis gene for circadian clock component.		Os08g0366200 	LOC_Os08g27860.1				GO:0007623 - circadian rhythm		
19305	ELF4B	ELF4_chr.3, OsELF4b, ELF4b	EARLY FLOWERING 4B				3	a rice ortholog of Arabidopsis gene for circadian clock component.		Os03g0410300 	LOC_Os03g29680.1				GO:0007623 - circadian rhythm		
19306	FYVE1	OsSTA28, OsFYVE01, OsFYVE01, FYVE01	FYVE DOMAIN-CONTAINING PROTEIN 1	FYVE Domain-containing protein 01	FYVE DOMAIN-CONTAINING PROTEIN 1		1	a mature anther-preferentially expressed gene. OsSTA28 might be a regulator of pollen fertility by influencing the unknown metabolic materials in rice.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	 Os01g0700200  	LOC_Os01g50470.1				GO:0046872 - metal ion binding	TO:0000053 - pollen sterility	PO:0025281 - pollen , PO:0009066 - anther , PO:0000002 - anther wall 
19307	APT1	OsSTA99, OsAPT1	ABERRANT POLLEN TRANSMISSION 1	aberrant pollen transmission 1	_		3	a mature anther-preferentially expressed gene. OsSTA99 may controll pollen germination and pollen tube growth by regulating the expression of Ca2+ and pectinesterase relative genes in rice.  the ortholog of ZmAPT1.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility	 Os03g0353600  	LOC_Os03g23030.1				GO:0009556 - microsporogenesis, GO:0009860 - pollen tube growth, GO:0009846 - pollen germination, GO:0016192 - vesicle-mediated transport, GO:0051493 - regulation of cytoskeleton organization, GO:0007015 - actin filament organization	TO:0000455 - seed set percent	PO:0009066 - anther , PO:0009029 - stamen , PO:0001013 - H late unicellular microspore stage , PO:0001059 - J bicellular pollen stage , PO:0025281 - pollen , PO:0000002 - anther wall , PO:0001016 - L mature pollen stage 
19308	DGK6	OsSTA208, OsDGK6	DIACYLGLYCEROL KINASE 6	Diacylglycerol kinase 6	DIACYLGLYCEROL KINASE 6		8	a mature anther-preferentially expressed gene. Down-regulating expression of OsSTA208 in anther wall might interrupt cross-talks between pollen and anther wall, which could be critical for pollen fertility. It was possible that OsSTA208 participated in stress response in the anther wall for regulating pollen fertility.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	 Os08g0249600  	LOC_Os08g15090.1				GO:0003951 - NAD+ kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, GO:0004143 - diacylglycerol kinase activity	TO:0000187 - anther color, TO:0000053 - pollen sterility	PO:0009066 - anther , PO:0000002 - anther wall 
19309	CYP96B2	OsCYP96B2	P-450 96B2	Cytochrome P450 96B2	CYTOCHROME P450 96B2		3	LOC_Os03g04630. EAZ25521.	 Biochemical character	Os03g0139600	LOC_Os03g04630.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
19310	CYP96B5	OsCYP96B5	P-450 96B5	Cytochrome P450 96B5	CYTOCHROME P450 96B5		3	LOC_Os03g04660. ABF93894.	 Biochemical character	Os03g0140200	LOC_Os03g04660.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity		
19311	CYP96B9	OsCYP96B9	P-450 96B9	Cytochrome P450 96B9	CYTOCHROME P450 96B9		3	LOC_Os03g04640. ABF93892.	 Biochemical character		LOC_Os03g04640				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
19312	CYP96B6	OsCYP96B6	P-450 96B6	Cytochrome P450 96B6	CYTOCHROME P450 96B6		3	LOC_Os03g04530. NP_001048908.	 Biochemical character	Os03g0138200	LOC_Os03g04530.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
19313	CYP96B7	OsCYP96B7	P-450 96B7	Cytochrome P450 96B7	CYTOCHROME P450 96B7				 Biochemical character								
19314	CYP96B8	OsCYP96B8	P-450 96B8	Cytochrome P450 96B8	CYTOCHROME P450 96B8		8	LOC_Os08g16260. NP_001061394.	 Biochemical character	Os08g0262500 	LOC_Os08g16260.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
19315	CYP96B10	OsCYP96B10	P-450 96B10	Cytochrome P450 96B10	CYTOCHROME P450 96B10			EAZ42091.	 Biochemical character						GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
19316	CYP96D1	OsCYP96D1	P-450 96D1	Cytochrome P450 96D1	CYTOCHROME P450 96D1			BAA99522.	 Biochemical character						GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
19317	CYP96D2	OsCYP96D2	P-450 96D2	Cytochrome P450 96D2	CYTOCHROME P450 96D2		5	LOC_Os05g08850. EEC78633.	 Biochemical character	Os05g0181200	LOC_Os05g08850.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
19318	CYP96E1	OsCYP96E1	P-450 96E1	Cytochrome P450 96E1	CYTOCHROME P450 96E1		1	LOC_Os01g08810.	 Biochemical character	Os01g0183600 	LOC_Os01g08810.1				GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding		
19320	LPR5	OsSTA2, STA2, OsLPR5	LOW PHOSPHATE ROOT 5	Low Phosphate Root5, Low Phosphate Root 5		Oslpr5-1, Oslpr5-2, Oslpr5-3, lpr5, lpr5-1, lpr5-2	1	a mature anther-preferentially expressed gene. TO:0020102: phosphate content.TO:0006049: iron concentration. GO:2000377: regulation of reactive oxygen species metabolic process.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os01g0127200	LOC_Os01g03640.1				GO:0004322 - ferroxidase activity, GO:0042594 - response to starvation, GO:0006817 - phosphate transport, GO:0016036 - cellular response to phosphate starvation, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0055062 - phosphate ion homeostasis, GO:0005783 - endoplasmic reticulum, GO:0005618 - cell wall, GO:0006979 - response to oxidative stress	TO:0002657 - oxidative stress, TO:0001016 - relative chlorophyll content, TO:0000371 - yield trait, TO:0006002 - proline content, TO:0000465 - mineral and ion content related trait, TO:0000656 - root development trait, TO:0000357 - growth and development trait, TO:0000325 - soluble protein content, TO:0000507 - osmotic adjustment capacity, TO:0006001 - salt tolerance, TO:0000608 - sodium content, TO:0000525 - sodium to potassium content ratio, TO:0000095 - osmotic response sensitivity	PO:0020141 - stem node , PO:0009066 - anther , PO:0009005 - root , PO:0006012 - leaf collar , PO:0007520 - root development stage 
19321	_	OsSTA4, OsRhmbd1, RHMBD1	_	Rhomboid 1, RHOMBOID 1			1	a mature anther-preferentially expressed gene. LOC_Os01g05430. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0147300	LOC_Os01g05430.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		PO:0009066 - anther 
19322	_	OsSTA5, OsRING37, RING37	_	RING-type E3 ubiquitin ligase 37			1	a mature anther-preferentially expressed gene. LOC_Os01g08340	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0178700	LOC_Os01g08340.1						PO:0009066 - anther 
19323	_	OsSTA6	_				1	a mature anther-preferentially expressed gene. LOC_Os01g09730	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0193400	LOC_Os01g09730.1, LOC_Os01g09730.2						PO:0009066 - anther 
19324	_	OsSTA10	_				1	a mature anther-preferentially expressed gene. LOC_Os01g16320	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0268700	LOC_Os01g16320.1						PO:0009066 - anther 
19325	_	OsSTA11, OsRFP, OsRING98, RING98	_	RING Finger Protein, RING-type E3 ubiquitin ligase 98			1	a mature anther-preferentially expressed gene. LOC_Os01g16950.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0276600	LOC_Os01g16950.1						PO:0009066 - anther 
19326	_	OsSTA13	_				1	a mature anther-preferentially expressed gene. LOC_Os01g23370	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0335550	LOC_Os01g23370.1						PO:0009066 - anther 
19327	_	OsSTA15	_				1	a mature anther-preferentially expressed gene. LOC_Os01g25440	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0356500	LOC_Os01g25440.1						PO:0009066 - anther 
19328	_	OsSTA16	_				1	a mature anther-preferentially expressed gene. LOC_Os01g36760	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0548000	LOC_Os01g36740.1, LOC_Os01g36760.1						PO:0009066 - anther 
19329	_	OsSTA17	_				1	a mature anther-preferentially expressed gene. LOC_Os01g40150	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0583700	LOC_Os01g40150.1						PO:0009066 - anther 
19330	HDA701	OsSTA18, OsHDA701	HISTONE DEACETYLASE 701	Histone Deacetylase 701	HISTONE DEACETYLASE 701		1	a mature anther-preferentially expressed gene. RPD/HDA1 family.	 Reproductive organ - Spikelet, flower, glume, awn,  Other,  Biochemical character	Os01g0586400	LOC_Os01g40400.1				GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0004407 - histone deacetylase activity, GO:0046872 - metal ion binding, GO:0006325 - chromatin organization, GO:0016575 - histone deacetylation		PO:0009066 - anther 
19331	_	OsSTA22	_				1	a mature anther-preferentially expressed gene. LOC_Os01g41930	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0603800	LOC_Os01g41930.1						PO:0009066 - anther 
19332	_	OsSTA23	_				1	a mature anther-preferentially expressed gene. LOC_Os01g41970	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os01g41970						PO:0009066 - anther 
19333	_	OsSTA24	_				1	a mature anther-preferentially expressed gene. LOC_Os01g42024	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0604900	LOC_Os01g42024.1						PO:0009066 - anther 
19334	_	OsSTA25	_				1	a mature anther-preferentially expressed gene. LOC_Os01g46250	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0651200	LOC_Os01g46250.1						PO:0009066 - anther 
19335	_	OsSTA26	_				1	a mature anther-preferentially expressed gene. LOC_Os01g47100	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0660500	LOC_Os01g47100.1						PO:0009066 - anther 
19336	_	OsSTA27	_				1	a mature anther-preferentially expressed gene. LOC_Os01g48540	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0677000	LOC_Os01g48540.1						PO:0009066 - anther 
19337	AMY4A	OsSTA30, Amy4A, OsAMY4A	ALPHA-AMYLASE 4A	Alpha-amylase4A	ALPHA-AMYLASE 4A		1	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0715400	LOC_Os01g51754.4, LOC_Os01g51754.1, LOC_Os01g51754.2, LOC_Os01g51754.3				GO:0005983 - starch catabolic process, GO:0004556 - alpha-amylase activity, GO:0009507 - chloroplast, GO:0005509 - calcium ion binding		PO:0009066 - anther 
19338	_	OsSTA31	_				1	a mature anther-preferentially expressed gene. LOC_Os01g52270	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0720800	LOC_Os01g52270.1						PO:0009066 - anther 
19339	_	OsSTA32	_				1	a mature anther-preferentially expressed gene. LOC_Os01g54520	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0749000	LOC_Os01g54520.1, LOC_Os01g54520.2						PO:0009066 - anther 
19340	_	OsSTA33	_				1	a mature anther-preferentially expressed gene. LOC_Os01g55850	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0764200	LOC_Os01g55850.1						PO:0009066 - anther 
19341	_	OsSTA34	_				1	a mature anther-preferentially expressed gene. LOC_Os01g56560	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0772400	LOC_Os01g56560.1						PO:0009066 - anther 
19342	_	OsSTA35	_				1	a mature anther-preferentially expressed gene. LOC_Os01g56764	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0774500	LOC_Os01g56764.1						PO:0009066 - anther 
19343	_	OsSTA36	_				1	a mature anther-preferentially expressed gene. LOC_Os01g62950	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0848700	LOC_Os01g62950.1						PO:0009066 - anther 
19344	ANTH2	OsSTA37, OsANTH2	ANTH DOMAIN-CONTAINING PROTEIN 2	ANTH domain-containing protein 2, AP180 N-terminal homology domain-containing protein 2	ANTH DOMAIN-CONTAINING PROTEIN 2		1	a mature anther-preferentially expressed gene. GO:0072583: clathrin-dependent endocytosis.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility	Os01g0881100	LOC_Os01g65860.1				GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0006900 - membrane budding, GO:0009860 - pollen tube growth, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0048268 - clathrin coat assembly, GO:0005794 - Golgi apparatus, GO:0005905 - coated pit, GO:0030136 - clathrin-coated vesicle, GO:0030276 - clathrin binding, GO:0006897 - endocytosis, GO:0000149 - SNARE binding, GO:0032050 - clathrin heavy chain binding, GO:0005545 - phosphatidylinositol binding, GO:0009555 - pollen development		PO:0009066 - anther , PO:0001007 - pollen development stage 
19345	_	OsSTA38	_				1	a mature anther-preferentially expressed gene. LOC_Os01g66330	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0886600	LOC_Os01g66330.1						PO:0009066 - anther 
19346	_	OsSTA39	_				1	a mature anther-preferentially expressed gene. LOC_Os01g66700	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0891000	LOC_Os01g66700.1						PO:0009066 - anther 
19347	_	OsSTA40	_				1	a mature anther-preferentially expressed gene. LOC_Os01g66860	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0892800	LOC_Os01g66860.2, LOC_Os01g66860.3, LOC_Os01g66860.4						PO:0009066 - anther 
19348	_	OsSTA41, STA41	_				1	a mature anther-preferentially expressed gene. LOC_Os01g70120	 Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm	Os01g0925600	LOC_Os01g70120.1, LOC_Os01g70120.2					TO:0000207 - plant height	PO:0009066 - anther 
19349	_	OsSTA43	_				1	a mature anther-preferentially expressed gene. LOC_Os01g71040	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0936700	LOC_Os01g71040.1						PO:0009066 - anther 
19350	_	OsSTA44	_				1	a mature anther-preferentially expressed gene. LOC_Os01g71800	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0946300	LOC_Os01g71800.1						PO:0009066 - anther 
19351	_	OsSTA45	_				1	a mature anther-preferentially expressed gene. LOC_Os01g74000	 Reproductive organ - Spikelet, flower, glume, awn	Os01g0971600	LOC_Os01g74000.1						PO:0009066 - anther 
19352	_	OsSTA48	_				2	a mature anther-preferentially expressed gene. LOC_Os02g06510	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0160100	LOC_Os02g06510.1						PO:0009066 - anther 
19353	_	OsSTA49	_				2	a mature anther-preferentially expressed gene. LOC_Os02g08240	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0179000	LOC_Os02g08240.1, LOC_Os02g08250.1						PO:0009066 - anther 
19354	_	OsSTA50	_				2	a mature anther-preferentially expressed gene. LOC_Os02g09530	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0188500	LOC_Os02g09530.1						PO:0009066 - anther 
19355	_	OsSTA52	_				2	a mature anther-preferentially expressed gene. LOC_Os02g10000	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0193400	LOC_Os02g10000.1						PO:0009066 - anther 
19356	_	OsSTA53	_				2	a mature anther-preferentially expressed gene. LOC_Os02g10440	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0197900	LOC_Os02g10440.1						PO:0009066 - anther 
19357	C2DP14	OsSTA54, OsC2DP14	C2 DOMAIN-CONTAINING PROTEIN 14	C2 Domain-Containing Protein 14	C2 DOMAIN-CONTAINING PROTEIN 14		2	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0199800	LOC_Os02g10630.1				GO:0016021 - integral to membrane		PO:0009066 - anther 
19358	_	OsSTA55	_				2	a mature anther-preferentially expressed gene. LOC_Os02g13580	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0229600	LOC_Os02g13570.1, LOC_Os02g13580.1						PO:0009066 - anther 
19359	_	OsSTA56	_				2	a mature anther-preferentially expressed gene. LOC_Os02g14710	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0244000	LOC_Os02g14710.1						PO:0009066 - anther 
19360	_	OsSTA57	_				2	a mature anther-preferentially expressed gene. LOC_Os02g17630	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g17630						PO:0009066 - anther 
19361	RKD10	OsSTA58, STA58, OsRKD10	RWP-RK DOMAIN PROTEIN 10	RWP-RK Domain 10, RWP-RK transcription factor 10	RWP-RK DOMAIN PROTEIN 10		2	a mature anther-preferentially expressed gene. target of Osa-miR1437.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0308300	LOC_Os02g20530.1						PO:0000084 - plant sperm cell , PO:0009066 - anther , PO:0000423 - plant zygote , PO:0020094 - plant egg cell 
19362	_	OsSTA59	_				2	a mature anther-preferentially expressed gene. LOC_Os02g31950	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g31950						PO:0009066 - anther 
19363	_	OsSTA60	_				2	a mature anther-preferentially expressed gene. LOC_Os02g32020	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g32020						PO:0009066 - anther 
19365	_	OsSTA62	_				2	a mature anther-preferentially expressed gene. LOC_Os02g33410	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os02g33410						PO:0009066 - anther 
19366	_	OsSTA63	_				2	a mature anther-preferentially expressed gene. LOC_Os02g33740	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0541900	LOC_Os02g33740.1						PO:0009066 - anther 
19367	WSL4	OsSTA65, STA65	WHITE STRIPE LEAF 4	white stripe leaf4		wsl4	2	a mature anther-preferentially expressed gene. LOC_Os02g35750	 Reproductive organ - Spikelet, flower, glume, awn,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os02g0565400	LOC_Os02g35750.1, LOC_Os02g35750.2, LOC_Os02g35750.3				GO:0004519 - endonuclease activity, GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0042644 - chloroplast nucleoid, GO:0009658 - chloroplast organization, GO:0000373 - Group II intron splicing, GO:0009409 - response to cold, GO:0048366 - leaf development	TO:0000069 - variegated leaf, TO:0000303 - cold tolerance, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000655 - leaf development trait	PO:0025034 - leaf , PO:0009066 - anther , PO:0001050 - leaf development stage 
19368	_	OsSTA67	_				2	a mature anther-preferentially expressed gene. LOC_Os02g42280	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0634100	LOC_Os02g42280.1						PO:0009066 - anther 
19369	_	OsSTA68	_				2	a mature anther-preferentially expressed gene. LOC_Os02g43840	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0655500	LOC_Os02g43840.1						PO:0009066 - anther 
19370	_	OsSTA69	_				2	a mature anther-preferentially expressed gene. LOC_Os02g44270	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0661500	LOC_Os02g44270.1, LOC_Os02g44270.2						PO:0009066 - anther 
19371	ARID2	OsSTA71, OsARID	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 2	AT-rich Interaction Domain-containing protein 2, AT-Rich Interaction Domain-containing transcription factor 2, ARID-containing transcription factor 2, ARID transcription factor 2	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 2		2	a mature anther-preferentially expressed gene. ARID protein, Hsp20 subfamily.	 Tolerance and resistance - Insect resistance,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0714300	LOC_Os02g48370.1, LOC_Os02g48370.2				GO:0003677 - DNA binding, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	PO:0009066 - anther 
19372	_	OsSTA72	_				2	a mature anther-preferentially expressed gene. LOC_Os02g49260	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0724500	LOC_Os02g49260.1						PO:0009066 - anther 
19374	_	OsSTA74	_				2	a mature anther-preferentially expressed gene. LOC_Os02g49790	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0730600	LOC_Os02g49790.1						PO:0009066 - anther 
19375	_	OsSTA76	_				2	a mature anther-preferentially expressed gene. LOC_Os02g50220	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0735000	LOC_Os02g50220.1						PO:0009066 - anther 
19376	_	OsSTA78	_				2	a mature anther-preferentially expressed gene. LOC_Os02g51730	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0753500	LOC_Os02g51730.1						PO:0009066 - anther 
19377	_	OsSTA79	_				2	a mature anther-preferentially expressed gene. LOC_Os02g52640	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0764400	LOC_Os02g52640.1						PO:0009066 - anther 
19378	_	OsSTA80	_	SRL2-like gene, semi-rolled leaf 2-like gene			2	a mature anther-preferentially expressed gene. LOC_Os02g53990.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0780500	LOC_Os02g53990.1						PO:0009066 - anther 
19379	_	OsSTA81	_				2	a mature anther-preferentially expressed gene. LOC_Os02g54100	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0781900	LOC_Os02g54100.1						PO:0009066 - anther 
19380	_	OsSTA82, STA82, OsPOP6, POP6	_	Prolyl Oligopeptidase 6, PROLYL OLIGOPEPTIDASE 6			2	a mature anther-preferentially expressed gene. LOC_Os02g55330. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os02g0796600	LOC_Os02g55330.1, LOC_Os02g55330.2						PO:0009066 - anther 
19381	_	OsSTA83, DLN72, OsDLN72	_	DLN repressor 72, DLN motif protein 72			2	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0823900	LOC_Os02g57790.1						PO:0009066 - anther 
19382	_	OsSTA84	_				2	a mature anther-preferentially expressed gene. LOC_Os02g58330	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0830000	LOC_Os02g58330.1						PO:0009066 - anther 
19383	CHX1	OsSTA85, STA85, OsCHX01, CHX01, OsCHX1	CATION/H+ EXCHANGER  1	cation/H+ exchanger  1	CATION/H+ EXCHANGER  1		2	LOC_Os02g58660. a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0833500	LOC_Os02g58660.1, LOC_Os02g58660.2				GO:0015672 - monovalent inorganic cation transport, GO:0006885 - regulation of pH, GO:0016021 - integral to membrane, GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system		PO:0009066 - anther , PO:0009046 - flower 
19384	_	OsSTA87	_				3	a mature anther-preferentially expressed gene. LOC_Os03g03270	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0124100	LOC_Os03g03270.1, LOC_Os03g03270.2						PO:0009066 - anther 
19385	_	OsSTA89, STA89, OsDUF810.1, DUF810.1	_	domains of unknown function 810.1, DUF810 family member 1			3	a mature anther-preferentially expressed gene. LOC_Os03g04560	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0138600	LOC_Os03g04560.1				GO:0009570 - chloroplast stroma		PO:0009066 - anther 
19386	_	OsSTA90	_				3	a mature anther-preferentially expressed gene. LOC_Os03g06890	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0164800	LOC_Os03g06890.1						PO:0009066 - anther 
19387	IQM2	OsSTA91, OsIQM2	IQ MOTIF CONTAINING PROTEIN 2	IQ motif containing protein 2	IQ MOTIF CONTAINING PROTEIN 2		3	a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0167200	LOC_Os03g07110.1, LOC_Os03g07110.2, LOC_Os03g07110.3				GO:0005829 - cytosol, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0009066 - anther 
19388	_	OsSTA92	_				3	a mature anther-preferentially expressed gene. LOC_Os03g07970	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0176800	LOC_Os03g07970.1						PO:0009066 - anther 
19389	_	OsSTA93	_				3	a mature anther-preferentially expressed gene. LOC_Os03g09160	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0191800	LOC_Os03g09160.1						PO:0009066 - anther 
19390	_	OsSTA94	_				3	a mature anther-preferentially expressed gene. LOC_Os03g10550	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os03g10550						PO:0009066 - anther 
19391	_	OsSTA95	_				3	a mature anther-preferentially expressed gene. LOC_Os03g16840	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os03g16840						PO:0009066 - anther 
19392	_	OsSTA96	_				3	a mature anther-preferentially expressed gene. LOC_Os03g17250	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0281100	LOC_Os03g17250.1						PO:0009066 - anther 
19393	_	OsSTA100	_				3	a mature anther-preferentially expressed gene. LOC_Os03g23940	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0355500	LOC_Os03g23940.1						PO:0009066 - anther 
19394	_	OsSTA101	_				3	a mature anther-preferentially expressed gene. LOC_Os03g25490	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0371000	LOC_Os03g25490.1, LOC_Os03g25490.2						PO:0009066 - anther 
19395	_	OsSTA103	_				3	a mature anther-preferentially expressed gene. LOC_Os03g27200	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os03g27200						PO:0009066 - anther 
19396	_	OsSTA104	_				3	a mature anther-preferentially expressed gene. LOC_Os03g41600	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0612400	LOC_Os03g41600.1						PO:0009066 - anther 
19397	B3DNA	OsSTA105, OsB3DNA	B3 DNA BINDING DOMAIN PROTEIN	B3 DNA binding domain	B3 DNA BINDING DOMAIN PROTEIN		3	a mature anther-preferentially expressed gene. Q851W4.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0620500	LOC_Os03g42290.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009066 - anther 
19398	_	OsSTA106, STA106	_				3	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0632732	LOC_Os03g43350.1						PO:0009066 - anther 
19399	_	OsSTA108	_				3	a mature anther-preferentially expressed gene. LOC_Os03g45930	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0661500	LOC_Os03g45930.1						PO:0009066 - anther 
19400	_	OsSTA109	_				3	a mature anther-preferentially expressed gene. LOC_Os03g47050	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0673600	LOC_Os03g47050.1						PO:0009066 - anther 
19401	THI37	OsSTA110, OsTHION37, THION37, OsTHI37	THIONIN 37		THIONIN 37		3	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0699950	LOC_Os03g49280.1						PO:0009066 - anther 
19402	_	OsSTA111	_				3	a mature anther-preferentially expressed gene. LOC_Os03g49590	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0702900	LOC_Os03g49590.1						PO:0009066 - anther 
19403	_	OsSTA112	_				3	a mature anther-preferentially expressed gene. LOC_Os03g51210	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0722000	LOC_Os03g51210.1						PO:0009066 - anther 
19404	_	OsSTA113	_				3	a mature anther-preferentially expressed gene. LOC_Os03g51990	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0729800	LOC_Os03g51990.1						PO:0009066 - anther 
19405	_	OsSTA114	_				3	a mature anther-preferentially expressed gene. LOC_Os03g53410	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0745700	LOC_Os03g53410.1						PO:0009066 - anther 
19406	_	OsSTA115	_				3	a mature anther-preferentially expressed gene. LOC_Os03g58190	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0796400	LOC_Os03g58190.1						PO:0009066 - anther 
19407	_	OsSTA116	_				4	a mature anther-preferentially expressed gene. LOC_Os04g17120	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os04g17120						PO:0009066 - anther 
19408	_	OsSTA118	_				4	a mature anther-preferentially expressed gene. LOC_Os04g21570	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0283600	LOC_Os04g21570.1						PO:0009066 - anther 
19409	_	OsSTA119	_				4	a mature anther-preferentially expressed gene. LOC_Os04g22990	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0296034	LOC_Os04g22990.1						PO:0009066 - anther 
19410	_	OsSTA120	_				4	a mature anther-preferentially expressed gene. LOC_Os04g26834	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0337000	LOC_Os04g26834.1						PO:0009066 - anther 
19411	PRD1	OsSTA121, STA121, OsPRD1	PUTATIVE RECOMBINATION INITIATION DEFECT 1			prd1, prd1-1, prd1-2, prd1-3	4	a mature anther-preferentially expressed gene. GO:0035825: homologous recombination. GO:0090306: meiotic spindle assembly. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0347800	LOC_Os04g28020.1				GO:0051383 - kinetochore organization, GO:0051382 - kinetochore assembly, GO:0043515 - kinetochore binding, GO:0005694 - chromosome, GO:0051321 - meiotic cell cycle, GO:0051225 - spindle assembly, GO:0007059 - chromosome segregation, GO:0042138 - meiotic DNA double-strand break formation, GO:0000776 - kinetochore	TO:0000358 - female sterility, TO:0000437 - male sterility	PO:0009049 - inflorescence , PO:0009066 - anther 
19412	_	OsSTA122	_				4	a mature anther-preferentially expressed gene. LOC_Os04g32190	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0392300	LOC_Os04g32190.1						PO:0009066 - anther 
19413	_	OsSTA123	_				4	a mature anther-preferentially expressed gene. LOC_Os04g32210	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0392500	LOC_Os04g32210.1						PO:0009066 - anther 
19414	_	OsSTA124	_				4	a mature anther-preferentially expressed gene. LOC_Os04g40150	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0477500	LOC_Os04g40150.1, LOC_Os04g40150.2						PO:0009066 - anther 
19415	_	OsSTA126	_				4	a mature anther-preferentially expressed gene. LOC_Os04g41200	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0489100	LOC_Os04g41200.1						PO:0009066 - anther 
19416	_	OsSTA127, STA127	_				4	a mature anther-preferentially expressed gene. LOC_Os04g44090	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0521600	LOC_Os04g44090.1						PO:0009066 - anther 
19417	_	OsSTA128	_				4	a mature anther-preferentially expressed gene. LOC_Os04g46079	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0545100	LOC_Os04g46079.1						PO:0009066 - anther 
19418	_	OsSTA129	_				4	a mature anther-preferentially expressed gene. LOC_Os04g46670	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0552400	LOC_Os04g46670.1						PO:0009066 - anther 
19419	_	OsSTA130	_				4	a mature anther-preferentially expressed gene. LOC_Os04g47110	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0558200	LOC_Os04g47110.1						PO:0009066 - anther 
19420	_	OsSTA131	_				4	a mature anther-preferentially expressed gene. LOC_Os04g48700	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0576300	LOC_Os04g48700.1						PO:0009066 - anther 
19421	_	OsSTA132	_				4	a mature anther-preferentially expressed gene. LOC_Os04g52950	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0620600	LOC_Os04g52950.1						PO:0009066 - anther 
19422	_	OsSTA133, OsMBTB8, MBTB8	_	M BTB-type E3 ubiquitin ligase 8			4	a mature anther-preferentially expressed gene. LOC_Os04g53430	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0625700	LOC_Os04g53430.1						PO:0009066 - anther 
19423	_	OsSTA134	_				4	a mature anther-preferentially expressed gene. LOC_Os04g53830	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0630600	LOC_Os04g53830.1						PO:0009066 - anther 
19424	ODD21	OsSTA135, STA135, OsODD21, 2-ODD21, Os2-ODD21, Os2ODD21, M2H, OsM2H, OsF3H5, F3H5	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 21	2-oxoglutarate-dependent dioxygenase 21, Melatonin 2-Hydroxylase, flavanone 3-hydroxylase 5	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 21		4	a mature anther-preferentially expressed gene. melatonin 2-hydroxylase. GO:0080167: response to karrikin. GO:1904576: response to tunicamycin.	 Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Physiological traits - Dormancy,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll	Os04g0667400	LOC_Os04g57180.1				GO:0009735 - response to cytokinin stimulus, GO:0048367 - shoot development, GO:0007623 - circadian rhythm, GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence, GO:0046686 - response to cadmium ion, GO:0030186 - melatonin metabolic process, GO:0009648 - photoperiodism, GO:0010030 - positive regulation of seed germination, GO:0009733 - response to auxin stimulus	TO:0000654 - shoot development trait, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000167 - cytokinin sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content, TO:0000467 - cell membrane stability, TO:0010001 - percent germination	PO:0009066 - anther , PO:0001054 - 4 leaf senescence stage 
19425	_	OsSTA136	_				4	a mature anther-preferentially expressed gene. LOC_Os04g58100	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0677400	LOC_Os04g58100.1						PO:0009066 - anther 
19426	_	OsSTA137	_				4	a mature anther-preferentially expressed gene. LOC_Os04g58380	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0680300	LOC_Os04g58380.1						PO:0009066 - anther 
19427	_	OsSTA138	_				5	a mature anther-preferentially expressed gene. LOC_Os05g03320	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0124000	LOC_Os05g03320.1						PO:0009066 - anther 
19428	PMEI21	OsSTA139, OsPMEI21	PECTIN METHYLESTERASE INHIBITOR 21	PME inhibitor 21, pectin methylesterase inhibitor 21	PECTIN METHYLESTERASE INHIBITOR 21		5	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os05g0149000	LOC_Os05g05640.1				GO:0004857 - enzyme inhibitor activity		PO:0009066 - anther 
19429	_	OsSTA140	_				5	a mature anther-preferentially expressed gene. LOC_Os05g05760	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0150100	LOC_Os05g05760.1						PO:0009066 - anther 
19430	_	OsSTA141	_				5	a mature anther-preferentially expressed gene. LOC_Os05g08390	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0176300	LOC_Os05g08390.1						PO:0009066 - anther 
19431	_	OsSTA142	_				5	a mature anther-preferentially expressed gene. LOC_Os05g20620	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os05g20620						PO:0009066 - anther 
19432	_	OsSTA143, STA143	_				5	a mature anther-preferentially expressed gene. LOC_Os05g20914	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0285900							PO:0009066 - anther 
19433	_	OsSTA144, STA144	_				5	a mature anther-preferentially expressed gene. LOC_Os05g23560	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os05g23560.1						PO:0009066 - anther 
19434	_	OsSTA145, STA145	_				5	a mature anther-preferentially expressed gene. LOC_Os05g26070	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0327000							PO:0009066 - anther 
19436	C2DP46	OsSTA148, OsC2DP46	C2 DOMAIN-CONTAINING PROTEIN 46	C2 Domain-Containing Protein 46	C2 DOMAIN-CONTAINING PROTEIN 46		5	a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0382000	LOC_Os05g31720.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009646 - response to absence of light, GO:0010446 - response to alkalinity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000481 - alkali sensitivity, TO:0000460 - light intensity sensitivity	PO:0009066 - anther 
19437	OSCA1.3	OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.3	Hyperosmolality-gated calcium-permeable channel 1.3, DUF221 Domain containing Protein 5, reduced hyperosmolality-induced Ca2+ increase 1.3	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.3		5	a mature anther-preferentially expressed gene. KJ920373. OSCA1 homologue. Oryza brachyantha ortholog: ObOSCA1.3, Oryza glaberrima ortholog: OgOSCA1.3.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0393800	LOC_Os05g32720.1				GO:0009737 - response to abscisic acid stimulus, GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0000084 - plant sperm cell , PO:0009066 - anther 
19438	_	OsSTA150	_				5	a mature anther-preferentially expressed gene. LOC_Os05g37150	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0443700	LOC_Os05g37150.2						PO:0009066 - anther 
19439	_	OsSTA151	_				5	a mature anther-preferentially expressed gene. LOC_Os05g37880	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0451900	LOC_Os05g37880.1						PO:0009066 - anther 
19440	_	OsSTA152	_				5	a mature anther-preferentially expressed gene. LOC_Os05g38790	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0463300	LOC_Os05g38790.1						PO:0009066 - anther 
19441	_	OsSTA153	_				5	a mature anther-preferentially expressed gene. LOC_Os05g40310	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0481700	LOC_Os05g40310.1						PO:0009066 - anther 
19442	_	OsSTA155	_				5	a mature anther-preferentially expressed gene. LOC_Os05g41150	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0490400	LOC_Os05g41150.1						PO:0009066 - anther 
19443	_	OsSTA157	_				5	a mature anther-preferentially expressed gene. LOC_Os05g42200	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0501350	LOC_Os05g42200.1						PO:0009066 - anther 
19444	_	OsSTA158, STA158	_				5	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0537200/Os05g0537300	LOC_Os05g46030.1						PO:0009066 - anther 
19445	2R_MYB61	OsSTA160, Os2R_MYB61	R2R3-MYB TRANSCRIPTION FACTOR 61	R2R3-MYB Transcription Factor 61	R2R3-MYB TRANSCRIPTION FACTOR 61		5	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0568200	LOC_Os05g49310.1						PO:0009066 - anther 
19446	_	OsSTA161	_				5	a mature anther-preferentially expressed gene. LOC_Os05g50830	 Reproductive organ - Spikelet, flower, glume, awn	Os05g0585800	LOC_Os05g50830.1, LOC_Os05g50830.2						PO:0009066 - anther 
19447	_	OsSTA163	_				6	a mature anther-preferentially expressed gene. LOC_Os06g01780	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0107000	LOC_Os06g01780.1						PO:0009066 - anther 
19448	_	OsSTA164	_				6	a mature anther-preferentially expressed gene. LOC_Os06g02450	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0114900	LOC_Os06g02450.1						PO:0009066 - anther 
19449	_	OsSTA165	_				6	a mature anther-preferentially expressed gene. LOC_Os06g03170 (The locus or model name was not found in MSU Rice Genome Annotation Project Release 7 data). 	 Reproductive organ - Spikelet, flower, glume, awn								PO:0009066 - anther 
19450	_	OsSTA166	_				6	a mature anther-preferentially expressed gene. LOC_Os06g03210	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0122900	LOC_Os06g03210.1						PO:0009066 - anther 
19451	_	OsSTA167	_				6	a mature anther-preferentially expressed gene. LOC_Os06g03630	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0126400	LOC_Os06g03630.1						PO:0009066 - anther 
19452	_	OsSTA168	_				6	a mature anther-preferentially expressed gene. LOC_Os06g05710	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0150000	LOC_Os06g05710.1						PO:0009066 - anther 
19453	_	OsSTA169	_				6	a mature anther-preferentially expressed gene. LOC_Os06g06430	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0158800	LOC_Os06g06430.1, LOC_Os06g06430.2						PO:0009066 - anther 
19456	_	OsSTA173	_				6	a mature anther-preferentially expressed gene. LOC_Os06g10140.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0202800	LOC_Os06g10140.1						PO:0009066 - anther 
19457	_	OsSTA174, RHS10, OsPERK6, PERK6	_	rice RHS10 ortholog, proline-rich extensin-like receptor kinase 6			6	a mature anther-preferentially expressed gene. LOC_Os06g29080.  a rice ortholog of Arabidopsis RHS10 (ROOT HAIR SPECIFIC 10). Extensin family protein.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root	Os06g0486000	LOC_Os06g29080.1				GO:0048767 - root hair elongation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0000172 - jasmonic acid sensitivity, TO:0002665 - root hair length, TO:0000439 - fungal disease resistance, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0007519 - 5 root hair formation stage , PO:0009066 - anther 
19458	_	OsSTA175	_				6	a mature anther-preferentially expressed gene. LOC_Os06g33460	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0526200	LOC_Os06g33460.1						PO:0009066 - anther 
19459	ANTH11	OsSTA176, OsANTH11	ANTH DOMAIN-CONTAINING PROTEIN 11	AP180 N-terminal homology domain-containing protein 11, ANTH domain-containing protein 11	ANTH DOMAIN-CONTAINING PROTEIN 11		6	a mature anther-preferentially expressed gene. GO:0072583: clathrin-dependent endocytosis.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility	Os06g0661400	LOC_Os06g45050.1				GO:0032050 - clathrin heavy chain binding, GO:0005905 - coated pit, GO:0030136 - clathrin-coated vesicle, GO:0030276 - clathrin binding, GO:0006897 - endocytosis, GO:0048268 - clathrin coat assembly, GO:0005545 - phosphatidylinositol binding, GO:0009555 - pollen development, GO:0009860 - pollen tube growth, GO:0006900 - membrane budding, GO:0005794 - Golgi apparatus, GO:0000149 - SNARE binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0005886 - plasma membrane		PO:0009066 - anther , PO:0001007 - pollen development stage 
19460	_	OsSTA177	_				6	a mature anther-preferentially expressed gene. LOC_Os06g45240	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0663000	LOC_Os06g45240.1						PO:0009066 - anther 
19461	_	OsSTA178, STA178	_				6	a mature anther-preferentially expressed gene. LOC_Os06g47520.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0690100							PO:0009066 - anther 
19462	_	OsSTA179	_				6	a mature anther-preferentially expressed gene. LOC_Os06g48790	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os06g48790						PO:0009066 - anther 
19463	_	OsSTA180	_				6	a mature anther-preferentially expressed gene. LOC_Os06g49850	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os06g49850						PO:0009066 - anther 
19464	_	OsSTA181, STA181, OsPMT16, PMT16	_	pectin methyltransferase 16		ospmt16	6	a mature anther-preferentially expressed gene. TO:0000862: floral organ morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0712800	LOC_Os06g49860.1				GO:0048437 - floral organ development, GO:0045488 - pectin metabolic process	TO:0002610 - pistil length, TO:0000223 - pistil anatomy and morphology trait, TO:0006022 - floral organ development trait, TO:0000392 - sterility or fertility trait, TO:0002609 - stamen length	PO:0009030 - carpel , PO:0009066 - anther , PO:0025585 - floral organ formation stage , PO:0025395 - floral organ 
19465	_	OsSTA184	_				7	a mature anther-preferentially expressed gene. LOC_Os07g01230	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0102200	LOC_Os07g01230.1						PO:0009066 - anther 
19466	_	OsSTA185	_				7	a mature anther-preferentially expressed gene. LOC_Os07g02430	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0115200	LOC_Os07g02430.1						PO:0009066 - anther 
19467	PERK7	OsSTA186, OsPERK7	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 7	proline-rich extensin-like receptor kinase 7	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 7		7	a mature anther-preferentially expressed gene. a protein kinase, core-domain-containing protein. a candidate chilling-tolerance gene.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0137800	LOC_Os07g04520.1				GO:0016036 - cellular response to phosphate starvation	TO:0006001 - salt tolerance, TO:0000102 - phosphorus sensitivity, TO:0000439 - fungal disease resistance	PO:0009066 - anther 
19468	_	OsSTA187	_				7	a mature anther-preferentially expressed gene. LOC_Os07g04980	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os07g04980						PO:0009066 - anther 
19469	_	OsSTA189	_				7	a mature anther-preferentially expressed gene. LOC_Os07g07080	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0165200	LOC_Os07g07080.1						PO:0009066 - anther 
19470	_	OsSTA190	_				7	a mature anther-preferentially expressed gene. LOC_Os07g07130	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os07g07130						PO:0009066 - anther 
19471	AKT3	OsSTA191, OsAKT3	_	shaker potassium channel AKT3			7	Q8H569. a mature anther-preferentially expressed gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0175400	LOC_Os07g07910.1				GO:0034702 - ion channel complex, GO:0005249 - voltage-gated potassium channel activity, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009066 - anther , PO:0009005 - root 
19472	_	OsSTA194	_				7	a mature anther-preferentially expressed gene. LOC_Os07g27750	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0461500	LOC_Os07g27750.1						PO:0009066 - anther 
19473	_	OsSTA195	_				7	a mature anther-preferentially expressed gene. LOC_Os07g31070	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0492900	LOC_Os07g31070.1						PO:0009066 - anther 
19474	C2DP65	OsSTA196, OsC2DP65	C2 DOMAIN-CONTAINING PROTEIN 65	C2 Domain-Containing Protein 65	C2 DOMAIN-CONTAINING PROTEIN 65		7	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0501700	LOC_Os07g31830.1				GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0009738 - abscisic acid mediated signaling		PO:0009066 - anther 
19475	_	OsSTA197	_				7	a mature anther-preferentially expressed gene. LOC_Os07g32920	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0513400	LOC_Os07g32920.1						PO:0009066 - anther 
19476	_	OsSTA198, STA198, OsFH11, FH11	_	formin homology 11, forming family protein 11, FH2 protein 11, FH2 domain protein 11			7	LOC_Os07g36150. a mature anther-preferentially expressed gene. Q0D5P3.	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0545500	LOC_Os07g36150.1				GO:0016021 - integral to membrane, GO:0016020 - membrane		PO:0009066 - anther 
19477	GATL4	OsSTA200, OsGATL4	GALACTURONOSYLTRANSFERASE-LIKE 4	galacturonosyltransferase-like 4	GALACTURONOSYLTRANSFERASE-LIKE 4		7	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os07g0646800	LOC_Os07g45260.1						PO:0009066 - anther 
19478	BMY7	OsSTA201, OsBmy7, Bmy7	BETA-AMYLASE 7	beta-amylase	BETA-AMYLASE 7		7	a mature anther-preferentially expressed gene. GO:0102229: amylopectin maltohydrolase activity.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os07g0667100	LOC_Os07g47120.1				GO:0000272 - polysaccharide catabolic process, GO:0016161 - beta-amylase activity		PO:0009066 - anther 
19479	_	OsSTA203	_				8	a mature anther-preferentially expressed gene. LOC_Os08g03600	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0130000	LOC_Os08g03600.1						PO:0009066 - anther 
19480	_	OsSTA204	_				8	a mature anther-preferentially expressed gene. LOC_Os08g04000	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os08g04000						PO:0009066 - anther 
19481	_	OsSTA205	_				8	a mature anther-preferentially expressed gene. LOC_Os08g05340	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0149000	LOC_Os08g05340.1						PO:0009066 - anther 
19482	_	OsSTA206	_				8	a mature anther-preferentially expressed gene. LOC_Os08g09930	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0199200	LOC_Os08g09930.1						PO:0009066 - anther 
19483	_	OsSTA209	_				8	a mature anther-preferentially expressed gene. LOC_Os08g23460	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0324200	LOC_Os08g23460.1						PO:0009066 - anther 
19484	_	OsSTA210	_				8	a mature anther-preferentially expressed gene. LOC_Os08g26370	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0352250	LOC_Os08g26370.1						PO:0009066 - anther 
19485	_	OsSTA213	_				8	a mature anther-preferentially expressed gene. LOC_Os08g31769	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0411500	LOC_Os08g31769.1, LOC_Os08g31769.2						PO:0009066 - anther 
19486	_	OsSTA214	_				8	a mature anther-preferentially expressed gene. LOC_Os08g35560	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0457000	LOC_Os08g35560.1						PO:0009066 - anther 
19487	_	OsSTA215	_				8	a mature anther-preferentially expressed gene. LOC_Os08g35770	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os08g35770						PO:0009066 - anther 
19488	GAUT7	OsSTA216, OsGAUT7	GALACTURONOSYLTRANSFERASE 7	galacturonosyltransferase 7	GALACTURONOSYLTRANSFERASE 7		8	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0496200	LOC_Os08g38740.1						PO:0009066 - anther 
19489	_	OsSTA217	_				8	a mature anther-preferentially expressed gene. LOC_Os08g42390	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0535700	LOC_Os08g42390.1						PO:0009066 - anther 
19490	_	OsSTA218	_				8	a mature anther-preferentially expressed gene. LOC_Os08g42480	 Reproductive organ - Spikelet, flower, glume, awn	Os08g0537001	LOC_Os08g42480.1						PO:0009066 - anther 
19491	_	OsSTA219	_				9	a mature anther-preferentially expressed gene. LOC_Os09g04300	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0129400	LOC_Os09g04300.1, LOC_Os09g04300.2, LOC_Os09g04300.3, LOC_Os09g04300.4						PO:0009066 - anther 
19492	_	OsSTA220	_				9	a mature anther-preferentially expressed gene. LOC_Os09g09630	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g09630						PO:0009066 - anther 
19493	XIO1	OsSTA221, Xio1, OsXio1	XOO-INDUCED ORPHAN 1 	Xoo-induced orphan gene 1, Xoo-induced orphan protein 1	XOO-INDUCED ORPHAN 1 		9	a mature anther-preferentially expressed gene. Xio1 homologous [O. sativa ssp. indica (B8BE71), O. rufipogon (A0A0E0QPF5), O. meridionalis (A0A0E0EQK1), O. glumipatula (A0A0E0B139), O. barthii (A0A0D3H4Y5)]. GO:0071219: cellular response to molecule of bacterial origin. GO:1903428: positive regulation of reactive oxygen species biosynthetic process.	 Character as QTL - Plant growth activity,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance	Os09g0304800	LOC_Os09g13440.2, LOC_Os09g13440.1				GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009873 - ethylene mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005829 - cytosol	TO:0000175 - bacterial blight disease resistance, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000357 - growth and development trait, TO:0000605 - hydrogen peroxide content	PO:0009066 - anther , PO:0025034 - leaf 
19494	_	OsSTA222	_				9	a mature anther-preferentially expressed gene. LOC_Os09g16580	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g16580						PO:0009066 - anther 
19495	_	OsSTA223, STA223	_				9	a mature anther-preferentially expressed gene. LOC_Os09g19550	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0359700	LOC_Os09g19550.1						PO:0009066 - anther 
19496	_	OsSTA224, STA224	_				9	a mature anther-preferentially expressed gene. LOC_Os09g19950.	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0364100	LOC_Os09g19550.1						PO:0009066 - anther 
19497	_	OsSTA225	_				9	a mature anther-preferentially expressed gene. LOC_Os09g22090	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0389000	LOC_Os09g22090.1						PO:0009066 - anther 
19498	_	OsSTA226	_				9	a mature anther-preferentially expressed gene. LOC_Os09g23340	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0397200	LOC_Os09g23340.1						PO:0009066 - anther 
19499	_	OsSTA227	_				9	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0424701	LOC_Os09g25650.1						PO:0009066 - anther 
19500	_	OsSTA228	_				9	a mature anther-preferentially expressed gene. LOC_Os09g27710	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g27710						PO:0009066 - anther 
19501	_	OsSTA229	_				9	a mature anther-preferentially expressed gene. LOC_Os09g29990	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os09g29990						PO:0009066 - anther 
19502	NHX6	OsSTA230, OsNHX6	NA+/H+ ANTIPORTER 6	Na+/H+ antiporter 6, NHX-type antiporter 6, Sodium/hydrogen antiporter 6	NA+/H+ ANTIPORTER 6		9	a mature anther-preferentially expressed gene. Oryza sativa subsp. Indica: BGIOSGA029567, Oryza rufipogon: ORUFI09G15320, Oryza meridionalis: OMERI09G11060, Oryza nivara: ONIVA09G14830, Oryza barthii: OBART09G14270, Oryza glumipatula: OGLUM09G14920.	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0482620	LOC_Os09g30446.1				GO:0016021 - integral to membrane, GO:0015299 - solute:hydrogen antiporter activity, GO:0015385 - sodium:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0005802 - trans-Golgi network		PO:0009066 - anther 
19503	_	OsSTA231	_				9	a mature anther-preferentially expressed gene. LOC_Os09g33790	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0512800	LOC_Os09g33790.1						PO:0009066 - anther 
19504	_	OsSTA232	_				9	a mature anther-preferentially expressed gene. LOC_Os09g36340	 Reproductive organ - Spikelet, flower, glume, awn	Os09g0533800	LOC_Os09g36340.1						PO:0009066 - anther 
19505	CHX3	OsSTA234, STA234, OsCHX03, CHX03, OsCHX3	CATION/H+ EXCHANGER  3	cation/H+ exchanger  3	CATION/H+ EXCHANGER  3		9	LOC_Os09g37300. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os09g0545000	LOC_Os09g37300.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system, GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane, GO:0006885 - regulation of pH		PO:0009046 - flower , PO:0009066 - anther 
19506	PT20	OsSTA235, OsPT20	PHOSPHATE TRANSPORTER 20	phosphate transporter 20	PHOSPHATE TRANSPORTER 20		9	a mature anther-preferentially expressed gene. LOC_Os09g38100	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os09g0554000	LOC_Os09g38100.1				GO:0016036 - cellular response to phosphate starvation, GO:0006810 - transport, GO:0005777 - peroxisome, GO:0016021 - integral to membrane	TO:0000102 - phosphorus sensitivity	PO:0009029 - stamen , PO:0009066 - anther 
19507	_	OsSTA236	_				10	a mature anther-preferentially expressed gene. LOC_Os10g08640	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0168100	LOC_Os10g08640.1						PO:0009066 - anther 
19508	_	OsSTA238	_				10	a mature anther-preferentially expressed gene. LOC_Os10g11022	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0188250	LOC_Os10g11022.1						PO:0009066 - anther 
19509	_	OsSTA239	_				10	a mature anther-preferentially expressed gene. LOC_Os10g11750	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0193500	LOC_Os10g11750.1						PO:0009066 - anther 
19510	_	OsSTA241	_				10	a mature anther-preferentially expressed gene. LOC_Os10g22080	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0365300	LOC_Os10g22080.1						PO:0009066 - anther 
19511	IQM6	OsSTA242, OsIQM6	IQ MOTIF CONTAINING PROTEIN 6	IQ motif containing protein 6	IQ MOTIF CONTAINING PROTEIN 6		10	a mature anther-preferentially expressed gene. orthologous to Zea mays Zm2g168222.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0411500	LOC_Os10g27170.1				GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009066 - anther 
19512	_	OsSTA243	_				10	a mature anther-preferentially expressed gene. LOC_Os10g27370	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os10g27370						PO:0009066 - anther 
19513	_	OsSTA244, OsBTB6, BTB6	_	BTB-type E3 ubiquitin ligase 6			10	a mature anther-preferentially expressed gene. LOC_Os10g28970	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0425400	LOC_Os10g28970.2						PO:0009066 - anther 
19514	BAMY1	OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2, OsBmy9, Bmy9, BMY5, OsBMY5	BETA-AMYLASE 1	beta-amylase 1, Beta-amylase 2	BETA-AMYLASE 1		10	a mature anther-preferentially expressed gene. Q9AV88. BGIOSGA033902 (indica). GO:0102229: amylopectin maltohydrolase activity. BAM2 in Wada et al. 2017. OsBmy9 in Liu et al. 2021. BMY5 in Wang et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os10g0465700	LOC_Os10g32810.1				GO:0009414 - response to water deprivation, GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process, GO:0005983 - starch catabolic process, GO:0051707 - response to other organism	TO:0000276 - drought tolerance	PO:0009066 - anther 
19515	_	OsSTA247	_				10	a mature anther-preferentially expressed gene. LOC_Os10g37260	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0516600	LOC_Os10g37260.1						PO:0009066 - anther 
19516	_	OsSTA248	_				10	a mature anther-preferentially expressed gene. LOC_Os10g41860	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0568100	LOC_Os10g41860.1						PO:0009066 - anther 
19517	_	OsSTA249	_				11	a mature anther-preferentially expressed gene. LOC_Os11g05970	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0158200	LOC_Os11g05970.1						PO:0009066 - anther 
19518	_	OsSTA250	_				11	a mature anther-preferentially expressed gene. LOC_Os11g06690	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0167500	LOC_Os11g06690.1						PO:0009066 - anther 
19519	_	OsSTA252	_				11	a mature anther-preferentially expressed gene. LOC_Os11g07510	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0176300	LOC_Os11g07510.1						PO:0009066 - anther 
19520	_	OsSTA254, STA254 OsSEC3B, SEC3B	_	exocyst subunit Sec3, exocyst subunit SEC3B			11	LOC_Os11g17600. a mature anther-preferentially expressed gene. OsSEC3B in Ma et al. 2018.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0276000	LOC_Os11g17600.1, LOC_Os11g17600.2, LOC_Os11g17600.3				GO:0017049 - GTP-Rho binding, GO:0051601 - exocyst localization, GO:0006893 - Golgi to plasma membrane transport, GO:0006887 - exocytosis, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0005886 - plasma membrane, GO:0000145 - exocyst		PO:0009066 - anther 
19521	_	OsSTA256	_				11	a mature anther-preferentially expressed gene. LOC_Os11g22396	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0417300	LOC_Os11g22396.1						PO:0009066 - anther 
19522	_	OsSTA257	_				11	a mature anther-preferentially expressed gene. LOC_Os11g22760	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0420200	LOC_Os11g22760.1						PO:0009066 - anther 
19523	_	OsSTA259	_				11	a mature anther-preferentially expressed gene. LOC_Os11g30350	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0496400	LOC_Os11g30350.1						PO:0009066 - anther 
19524	JRL21	OsSTA260, OsJRL21	JACALIN-RELATED LECTIN 21		JACALIN-RELATED LECTIN 21		11	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0524900	LOC_Os11g32210.1				GO:0030246 - carbohydrate binding		PO:0009066 - anther 
19525	DHHC26	OsSTA261, OsDHHC26	DHHC DOMAIN PROTEIN 26	DHHC domain protein 26	DHHC DOMAIN PROTEIN 26		11	a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os11g0534300	LOC_Os11g32960.1				GO:0006612 - protein targeting to membrane, GO:0005783 - endoplasmic reticulum, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity		PO:0009066 - anther 
19526	_	OsSTA262	_				11	a mature anther-preferentially expressed gene. LOC_Os11g33250	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0539000	LOC_Os11g33250.1						PO:0009066 - anther 
19527	_	OsSTA263	_				11	a mature anther-preferentially expressed gene. LOC_Os11g36740	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0575900	LOC_Os11g36740.1						PO:0009066 - anther 
19528	_	OsSTA264, STA264, Duf6, qSCT11	_	QTL for seedling cold tolerance on chromosome 11			11	a mature anther-preferentially expressed gene. LOC_Os11g37720.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os11g0588100	LOC_Os11g37720.1				GO:0022857 - transmembrane transporter activity, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance	PO:0009066 - anther 
19529	_	OsSTA266	_				11	a mature anther-preferentially expressed gene. LOC_Os11g40650	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os11g40650						PO:0009066 - anther 
19530	_	OsSTA267	_				11	a mature anther-preferentially expressed gene. LOC_Os11g40800	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0624400	LOC_Os11g40800.1						PO:0009066 - anther 
19531	_	OsSTA268	_				11	a mature anther-preferentially expressed gene. LOC_Os11g41550	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os11g41550						PO:0009066 - anther 
19532	_	OsSTA272	_				12	a mature anther-preferentially expressed gene. LOC_Os12g04340	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os12g04340						PO:0009066 - anther 
19533	_	OsSTA274	_				12	a mature anther-preferentially expressed gene. LOC_Os12g06780	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0164600	LOC_Os12g06780.1						PO:0009066 - anther 
19534	_	OsSTA275	_				12	a mature anther-preferentially expressed gene. LOC_Os12g07840	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os12g07840.1						PO:0009066 - anther 
19535	_	OsSTA278	_				12	a mature anther-preferentially expressed gene. LOC_Os12g18960	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0288000	LOC_Os12g18960.1, LOC_Os12g18960.2						PO:0009066 - anther 
19536	PGLP3	OsSTA280, OsPGLP3	PHOSPHOGLYCOLATE PHOSPHATASE 3		PHOSPHOGLYCOLATE PHOSPHATASE 3		12	a mature anther-preferentially expressed gene.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0420000	LOC_Os12g23150.1				GO:0009507 - chloroplast, GO:0016791 - phosphatase activity		PO:0009066 - anther 
19537	_	OsSTA283	_				12	a mature anther-preferentially expressed gene. LOC_Os12g31670	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0500900	LOC_Os12g31670.1						PO:0009066 - anther 
19538	_	OsSTA284	_				12	a mature anther-preferentially expressed gene. LOC_Os12g32310	 Reproductive organ - Spikelet, flower, glume, awn		LOC_Os12g32310						PO:0009066 - anther 
19539	_	OsSTA285	_				12	a mature anther-preferentially expressed gene. LOC_Os12g32520	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0509600	LOC_Os12g32520.1						PO:0009066 - anther 
19540	_	OsSTA286	_				12	a mature anther-preferentially expressed gene. LOC_Os12g38260	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0570500	LOC_Os12g38260.1						PO:0009066 - anther 
19541	_	OsSTA288	_				12	a mature anther-preferentially expressed gene. LOC_Os12g41350	 Reproductive organ - Spikelet, flower, glume, awn	Os12g0606600	LOC_Os12g41350.1, LOC_Os12g41350.2						PO:0009066 - anther 
19542	AGC26	OsSTA290, OsAGC26	AGC PROTEIN KINASE 26	AGC protein kinase 26	AGC PROTEIN KINASE 26		12	a mature anther-preferentially expressed gene. GO:0035556: intracellular signal transduction.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0621500	LOC_Os12g42660.1				GO:0018105 - peptidyl-serine phosphorylation, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0009826 - unidimensional cell growth		PO:0009066 - anther 
19543	CHX4	OsSTA291, OsCHX04, CHX04, OsCHX4	CATION/H+ EXCHANGER  4	cation/H+ exchanger  4	CATION/H+ EXCHANGER  4		12	LOC_Os12g44300. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os12g0640500	LOC_Os12g44300.1				GO:0016021 - integral to membrane, GO:0015299 - solute:hydrogen antiporter activity		PO:0009066 - anther 
19544	_	OsSec18, Sec18, OsNSF, NSF	_	N-ethylmaleimide-sensitive factor			5	a homologue of Sec18p/N-ethylmaleimide-sensitive factor (NSF).	 Seed - Morphological traits - Endosperm	Os05g0519400	LOC_Os05g44310.1				GO:0005524 - ATP binding, GO:0051028 - mRNA transport, GO:0005768 - endosome, GO:0005737 - cytoplasm, GO:0042735 - protein body, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane, GO:0005794 - Golgi apparatus, GO:0005773 - vacuole, GO:0016197 - endosome transport	TO:0000589 - seed weight (sensu Poaceae), TO:0000207 - plant height	PO:0009089 - endosperm 
19546	CHX11	NaT, OsCHX11	CATION/H+ EXCHANGER  11	Sodium transporter, cation/H+ exchanger  11	CATION/H+ EXCHANGER  11		5	LOC_Os05g31730.	 Biochemical character	Os05g0382200	LOC_Os05g31730.1				GO:0016021 - integral to membrane, GO:0015299 - solute:hydrogen antiporter activity		
19547	_		_				1	an OsPR1b-interacting factor.		Os01g0184200	LOC_Os01g08880.1				GO:0042623 - ATPase activity, coupled, GO:0005778 - peroxisomal membrane, GO:0006625 - protein targeting to peroxisome, GO:0005524 - ATP binding		
19548	PSBR3	OsPsbR3, PsbR3	PHOTOSYSTEM II SUBUNIT PSBR3	PSII subunit PsbR3, photosystem II subunit PsbR3	PHOTOSYSTEM II SUBUNIT PSBR3		8	an OsPR1b-interacting factor. a 10 kDa Photosystem II polypeptide.  eukaryotic photosystem II oxygen-evolving complex subunit. Psb R in Liu et al. 2018.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0200300	LOC_Os08g10020.3, LOC_Os08g10020.2, LOC_Os08g10020.1				GO:0009737 - response to abscisic acid stimulus, GO:0009654 - oxygen evolving complex, GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0015979 - photosynthesis, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	
19549	LSK1	OsLSK1, SDRLK-LSK1, OsSDRLK-LSK1	LARGE SPIKE S-DOMAIN RECEPTOR LIKE KINASE 1	Large spike S-domain receptor like Kinase 1, S-domain receptor-like kinase-LSK1	LARGE SPIKE S-DOMAIN RECEPTOR LIKE KINASE 1		1	an OsPR1b-interacting factor. resistance protein.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os01g0669100	LOC_Os01g47900.1				GO:0006970 - response to osmotic stress, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0005886 - plasma membrane, GO:0010372 - positive regulation of gibberellin biosynthetic process, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0009628 - response to abiotic stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0002759 - grain number, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0020141 - stem node , PO:0009005 - root 
19550	KASI-1	OsKASI, KASI, OsKASI-1	BETA-KETOACYL-ACP SYNTHASE I-1	beta-ketoacyl-[acyl carrier protein] synthase I, b-ketoacyl-ACP synthase I-1	BETA-KETOACYL-ACP SYNTHASE I-1	OskasI	6		 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character,  Vegetative organ - Root	Os06g0196600	LOC_Os06g09630.1				GO:0048364 - root development, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006633 - fatty acid biosynthetic process, GO:0009536 - plastid, GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity, GO:0005739 - mitochondrion	TO:0000604 - fat and essential oil content, TO:0000656 - root development trait, TO:0000392 - sterility or fertility trait	PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage 
19551	UBC3	OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2, OsSCE3, SCE3	UBIQUITIN-CONJUGATING ENZYME 3	Ubiquitin-conjugating enzyme 3, E2 SUMO conjugation enzyme 1c, SUMO conjugation enzyme 1c, E2 protein SCE1c, SUMO-conjugating enzyme 3	UBIQUITIN-CONJUGATING ENZYME 3		4	OsSCEc in Rosa et al. 2018. OsSCE3 in Park et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0580400	LOC_Os04g49130.2, LOC_Os04g49130.1				GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0019789 - SUMO ligase activity, GO:0009733 - response to auxin stimulus, GO:0005654 - nucleoplasm	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	PO:0020148 - shoot apical meristem 
19552	UBC4	OsUBC4	UBIQUITIN-CONJUGATING ENZYME 4	Ubiquitin-conjugating enzyme 4	UBIQUITIN-CONJUGATING ENZYME 4		10	LOC_Os10g11260.	 Biochemical character	Os10g0190000	LOC_Os10g11260.1, LOC_Os10g11260.2, LOC_Os10g11260.3, LOC_Os10g11260.4				GO:0009737 - response to abscisic acid stimulus, GO:0016874 - ligase activity	TO:0000615 - abscisic acid sensitivity	
19553	UBC5	OsUBC5	UBIQUITIN-CONJUGATING ENZYME 5	Ubiquitin-conjugating enzyme 5	UBIQUITIN-CONJUGATING ENZYME 5		8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0374100	LOC_Os08g28680.1				GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation, GO:0016874 - ligase activity	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance	
19554	UBC6	OsUBC6	UBIQUITIN-CONJUGATING ENZYME 6	Ubiquitin-conjugating enzyme 6	UBIQUITIN-CONJUGATING ENZYME 6		9	LOC_Os09g15320.	 Biochemical character	Os09g0321900	LOC_Os09g15320.1, LOC_Os09g15320.2				GO:0016874 - ligase activity, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
19555	UBC7	OsUBC7	UBIQUITIN-CONJUGATING ENZYME 7	Ubiquitin-conjugating enzyme 7	UBIQUITIN-CONJUGATING ENZYME 7		7	LOC_Os07g07240.	 Reproductive organ - Inflorescence,  Biochemical character	Os07g0166800	LOC_Os07g07240.1, LOC_Os07g07240.2				GO:0009737 - response to abscisic acid stimulus, GO:0016874 - ligase activity	TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence 
19556	UBC8	OsUBC8	UBIQUITIN-CONJUGATING ENZYME 8	Ubiquitin-conjugating enzyme 8	UBIQUITIN-CONJUGATING ENZYME 8		5	LOC_Os05g08960.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os05g0182500	LOC_Os05g08960.1, LOC_Os05g08960.2				GO:0009414 - response to water deprivation, GO:0016874 - ligase activity, GO:0009651 - response to salt stress	TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009046 - flower 
19557	UBC10	OsUBC10	UBIQUITIN-CONJUGATING ENZYME 10	Ubiquitin-conjugating enzyme 10	UBIQUITIN-CONJUGATING ENZYME 10		10	LOC_Os10g31000.	 Biochemical character	Os10g0447100	LOC_Os10g31000.1, LOC_Os10g31000.2				GO:0016874 - ligase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
19558	UBC11	OsUBC11	UBIQUITIN-CONJUGATING ENZYME 11	Ubiquitin-conjugating enzyme 11	UBIQUITIN-CONJUGATING ENZYME 11	osubc11, osubc11-1, osubc11-4, osubc11-9	1	GO:0060918: auxin transport. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Reproductive organ - panicle	Os01g0839700	LOC_Os01g62244.1, LOC_Os01g62244.2, LOC_Os01g62244.3				GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0009734 - auxin mediated signaling pathway, GO:0009555 - pollen development, GO:0009733 - response to auxin stimulus, GO:0010600 - regulation of auxin biosynthetic process, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0016874 - ligase activity	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000207 - plant height, TO:0002672 - auxin content, TO:0001012 - lateral root length, TO:0000227 - root length, TO:0000145 - internode length, TO:0000218 - pollen abortion type, TO:0000455 - seed set percent, TO:0000040 - panicle length	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009005 - root , PO:0001007 - pollen development stage , PO:0007520 - root development stage , PO:0009047 - stem 
19559	UBC12	OsUBC12	UBIQUITIN-CONJUGATING ENZYME 12	Ubiquitin-conjugating enzyme 12	UBIQUITIN-CONJUGATING ENZYME 12	osubc12, osubc12-ks1, osubc12-ks2, osubc12-2, osubc12-3, osubc12-10	5	GO:1901800: positive regulation of proteasomal protein catabolic process.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Biochemical character	Os05g0460200	LOC_Os05g38550.1, LOC_Os05g38550.2				GO:0009414 - response to water deprivation, GO:0010498 - proteasomal protein catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0010029 - regulation of seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0070936 - protein K48-linked ubiquitination, GO:0009409 - response to cold, GO:0016874 - ligase activity, GO:0009651 - response to salt stress, GO:0009845 - seed germination	TO:0000615 - abscisic acid sensitivity, TO:0000483 - germinability at low temperature, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000430 - germination rate	
19560	_	OsUBC13, UBC13	_	Ubiquitin-conjugating enzyme 13	UBIQUITIN-CONJUGATING ENZYME 13		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0120600	LOC_Os02g02830.1, LOC_Os02g02830.2				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016874 - ligase activity, GO:0042023 - DNA endoreduplication, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0043248 - proteasome assembly, GO:0051510 - regulation of unidimensional cell growth, GO:0051788 - response to misfolded protein	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009047 - stem , PO:0025034 - leaf 
19561	UBC17	OsUBC17	UBIQUITIN-CONJUGATING ENZYME 17	Ubiquitin-conjugating enzyme 17	UBIQUITIN-CONJUGATING ENZYME 17		6	LOC_Os06g30970.	 Biochemical character	Os06g0506600	LOC_Os06g30970.1				GO:0051510 - regulation of unidimensional cell growth, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0042023 - DNA endoreduplication, GO:0043248 - proteasome assembly, GO:0051788 - response to misfolded protein, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
19562	UBC18	OsUBC18	UBIQUITIN-CONJUGATING ENZYME 18	Ubiquitin-conjugating enzyme 18	UBIQUITIN-CONJUGATING ENZYME 18		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0293400	LOC_Os09g12230.1				GO:0009414 - response to water deprivation, GO:0016874 - ligase activity, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root 
19563	UBC22	OsUBC22	UBIQUITIN-CONJUGATING ENZYME 22	Ubiquitin-conjugating enzyme 22	UBIQUITIN-CONJUGATING ENZYME 22		1	LOC_Os01g60410.	 Biochemical character	Os01g0819500	LOC_Os01g60410.1, LOC_Os01g60410.2, LOC_Os01g60410.3				GO:0009737 - response to abscisic acid stimulus, GO:0006635 - fatty acid beta-oxidation, GO:0051788 - response to misfolded protein, GO:0009407 - toxin catabolic process, GO:0042023 - DNA endoreduplication, GO:0080129 - proteasome core complex assembly, GO:0010286 - heat acclimation, GO:0006301 - postreplication repair, GO:0051510 - regulation of unidimensional cell growth, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process	TO:0000615 - abscisic acid sensitivity	
19564	UBC23	OsUBC23	UBIQUITIN-CONJUGATING ENZYME 23	Ubiquitin-conjugating enzyme 23	UBIQUITIN-CONJUGATING ENZYME 23		1	LOC_Os01g60360.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os01g0819400	LOC_Os01g60360.1				GO:0080129 - proteasome core complex assembly, GO:0006301 - postreplication repair, GO:0006635 - fatty acid beta-oxidation, GO:0009407 - toxin catabolic process, GO:0010286 - heat acclimation, GO:0016874 - ligase activity, GO:0042023 - DNA endoreduplication, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0051510 - regulation of unidimensional cell growth, GO:0051788 - response to misfolded protein		PO:0009049 - inflorescence , PO:0009046 - flower 
19565	UBC25	OsUBC25	UBIQUITIN-CONJUGATING ENZYME 25	Ubiquitin-conjugating enzyme 25	UBIQUITIN-CONJUGATING ENZYME 25		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0681400	LOC_Os03g47770.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance	
19566	UBC26	OsUBC26	UBIQUITIN-CONJUGATING ENZYME 26	Ubiquitin-conjugating enzyme 26	UBIQUITIN-CONJUGATING ENZYME 26		12	GO:0061631: ubiquitin conjugating enzyme activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0636800	LOC_Os12g44000.3, LOC_Os12g44000.1, LOC_Os12g44000.2				GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation	TO:0000401 - plant growth hormone sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root 
19567	UBC27	OsUBC27	UBIQUITIN-CONJUGATING ENZYME 27	Ubiquitin-conjugating enzyme 27	UBIQUITIN-CONJUGATING ENZYME 27		1	LOC_Os01g16650.	 Biochemical character	Os01g0273100	LOC_Os01g16650.1				GO:0009739 - response to gibberellin stimulus, GO:0016874 - ligase activity	TO:0000166 - gibberellic acid sensitivity	PO:0020148 - shoot apical meristem 
19568	UBC33	OsUBC33	UBIQUITIN-CONJUGATING ENZYME 33	Ubiquitin-conjugating enzyme 33	UBIQUITIN-CONJUGATING ENZYME 33		6	LOC_Os06g45000.	 Reproductive organ - Inflorescence,  Biochemical character	Os06g0660700	LOC_Os06g45000.1, LOC_Os06g45000.2, LOC_Os06g45000.3				GO:0009737 - response to abscisic acid stimulus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016874 - ligase activity	TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0020148 - shoot apical meristem 
19569	UBC34	OsUBC34	UBIQUITIN-CONJUGATING ENZYME 34	Ubiquitin-conjugating enzyme 34	UBIQUITIN-CONJUGATING ENZYME 34		1	LOC_Os01g03520.	 Biochemical character	Os01g0125900	LOC_Os01g03520.1				GO:0048316 - seed development, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0006301 - postreplication repair, GO:0005829 - cytosol	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait, TO:0000163 - auxin sensitivity	PO:0001170 - seed development stage 
19570	UBC36	OsUBC36	UBIQUITIN-CONJUGATING ENZYME 36	Ubiquitin-conjugating enzyme 36	UBIQUITIN-CONJUGATING ENZYME 36		5		 Biochemical character	Os05g0153066/Os05g0153132	LOC_Os05g06120.1				GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity	
19571	UBC37	OsUBC37	UBIQUITIN-CONJUGATING ENZYME 37	Ubiquitin-conjugating enzyme 37	UBIQUITIN-CONJUGATING ENZYME 37		1	LOC_Os01g13280.	 Biochemical character	Os01g0233900	LOC_Os01g13280.1				GO:0048316 - seed development, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
19572	UBC39	OsUBC39	UBIQUITIN-CONJUGATING ENZYME 39	Ubiquitin-conjugating enzyme 39	UBIQUITIN-CONJUGATING ENZYME 39		1	LOC_Os01g48580.	 Biochemical character	Os01g0677500	LOC_Os01g48580.1				GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
19573	UBC40	OsUBC40	UBIQUITIN-CONJUGATING ENZYME 40	Ubiquitin-conjugating enzyme 40	UBIQUITIN-CONJUGATING ENZYME 40		9	LOC_Os09g12310.	 Biochemical character	Os09g0294300	LOC_Os09g12310.1				GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity	
19574	UBC41	OsUBC41	UBIQUITIN-CONJUGATING ENZYME 41	Ubiquitin-conjugating enzyme 41	UBIQUITIN-CONJUGATING ENZYME 41		5	LOC_Os05g48380.	 Biochemical character	Os05g0557600	LOC_Os05g48380.1				GO:0048316 - seed development, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
19575	UBC42	OsUBC42	UBIQUITIN-CONJUGATING ENZYME 42	Ubiquitin-conjugating enzyme 42	UBIQUITIN-CONJUGATING ENZYME 42		1	LOC_Os01g13170.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0232500	LOC_Os01g13170.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0048316 - seed development	TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0006001 - salt tolerance	PO:0001170 - seed development stage 
19576	UBC43	OsUBC43	UBIQUITIN-CONJUGATING ENZYME 43	Ubiquitin-conjugating enzyme 43	UBIQUITIN-CONJUGATING ENZYME 43		5	LOC_Os05g14300.	 Biochemical character	Os05g0232500	LOC_Os05g14300.1				GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity	
19577	UBC44	OsUBC44	UBIQUITIN-CONJUGATING ENZYME 44	Ubiquitin-conjugating enzyme 44	UBIQUITIN-CONJUGATING ENZYME 44		1	LOC_Os01g70140.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0925800	LOC_Os01g70140.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0016874 - ligase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0020148 - shoot apical meristem 
19578	SMG3	OsUBC45, UBC45, OsSMG3	SMALL GRAIN 3	Ubiquitin-conjugating enzyme 45	UBIQUITIN-CONJUGATING ENZYME 45	smg3-1, smg3-2, smg3-3	3	PO:0030123: panicle inflorescence.	 Vegetative organ - Root,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0308000	LOC_Os03g19500.1				GO:0080129 - proteasome core complex assembly, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0051788 - response to misfolded protein, GO:0048471 - perinuclear region of cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0002238 - response to molecule of fungal origin, GO:0045089 - positive regulation of innate immune response, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0005783 - endoplasmic reticulum, GO:0006301 - postreplication repair, GO:0009407 - toxin catabolic process, GO:0006635 - fatty acid beta-oxidation, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0042631 - cellular response to water deprivation, GO:0019375 - galactolipid biosynthetic process, GO:0016036 - cellular response to phosphate starvation, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000653 - seed development trait, TO:0000447 - filled grain number, TO:0000276 - drought tolerance, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000074 - blast disease, TO:0000590 - grain weight, TO:0000040 - panicle length, TO:0000615 - abscisic acid sensitivity	PO:0001170 - seed development stage , PO:0009005 - root , PO:0009049 - inflorescence 
19579	UBC46	OsUBC46	UBIQUITIN-CONJUGATING ENZYME 46	Ubiquitin-conjugating enzyme 46	UBIQUITIN-CONJUGATING ENZYME 46		6	LOC_Os06g09330.	 Biochemical character	Os06g0193000	LOC_Os06g09330.1, LOC_Os06g09330.2				GO:0048316 - seed development, GO:0009737 - response to abscisic acid stimulus	TO:0000653 - seed development trait, TO:0000615 - abscisic acid sensitivity	PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0001170 - seed development stage 
19580	UBC48	OsUBC48	UBIQUITIN-CONJUGATING ENZYME 48	Ubiquitin-conjugating enzyme 48	UBIQUITIN-CONJUGATING ENZYME 48		1	LOC_Os01g42040.	 Biochemical character	Os01g0605300	LOC_Os01g42040.1				GO:0016874 - ligase activity		PO:0020148 - shoot apical meristem 
19581	GRY79	OsGRY79, OsMSL12, MSL12	GREEN-REVERTIBLE YELLOW 79	green-revertible yellow79, Myb/SANT-LIKE 12		gry79	2	a putative metallo-b-lactamase-trihelix chimera.	 Coloration,  Vegetative organ - Leaf	Os02g0539600	LOC_Os02g33610.2, LOC_Os02g33610.1				GO:0045333 - cellular respiration, GO:0003682 - chromatin binding, GO:0003677 - DNA binding, GO:0009658 - chloroplast organization, GO:0015979 - photosynthesis, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0009507 - chloroplast, GO:0006351 - transcription, DNA-dependent	TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000496 - carotenoid content	PO:0025034 - leaf , PO:0007112 - 1 main shoot growth stage 
19582	_	OsULT1	_	ULTRAPETALA1, ULTRAPETALA 1			1	SAND-domain containing transcriptional regulator. LOC_Os01g57240.		Os01g0780800	LOC_Os01g57240.1				GO:0003677 - DNA binding		
19583	_	OsDGAT	_	diacylglycerolacetyl transferase			2	a triacylglycerol (TAG) biosynthesis gene. LOC_Os02g48350.	 Biochemical character	Os02g0714100	LOC_Os02g48350.1				GO:0019432 - triglyceride biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
19584	_	OsTCP3, TCP3	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 3			1	LOC_Os01g41130 (not found in MSU Rice Genome Annotation Project Release 7 data). The locus corresponding to OsTCP3 (LOC_Os01g41130) has been considered obsolete since release 4 of MSU database. However, EST support for this gene is present in NCBI database (Sharma et al. 2010).							GO:0005634 - nucleus		
19585	_	OsTCP11, TCP11	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 11			2	LOC_Os02g58180.	 Tolerance and resistance - Stress tolerance	Os02g0828600	LOC_Os02g58180.1				GO:0009409 - response to cold, GO:0005634 - nucleus	TO:0000303 - cold tolerance	
19586	_	OsTCP12, TCP12	_	TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 12			3	LOC_Os03g30880.			LOC_Os03g30880				GO:0005634 - nucleus		
19587	_	OsTPR1, TPR1	_	TOPLESS-RELATED PROTEIN 1				a transcriptional repressor.									
19588	_	OsTPR2, TPR2	_	TOPLESS-RELATED PROTEIN 2				a transcriptional repressor.									
19589	_	OsTPR3, TPR3	_	TOPLESS-RELATED PROTEIN 3				a transcriptional repressor.									
19590	_	OsRING159, RING159	_	RING-type E3 ubiquitin ligase 159			3	one of the three paralogous RING proteins of OsSRFP1 in the rice genome. LOC_Os03g05270.		Os03g0145900	LOC_Os03g05270.1, LOC_Os03g05270.2, LOC_Os03g05270.3				GO:0008270 - zinc ion binding		
19591	RING158	SDEL1, OsSDEL1, OsRING158	RING-TYPE E3 UBIQUITIN LIGASE 158	RING-type E3 ubiquitin ligase 158, SPX4 degradation E3 ligase 1	RING-TYPE E3 UBIQUITIN LIGASE 158	sdel1-1	12	one of the three paralogous RING proteins of OsSRFP1 in the rice genome. TO:0020102: phosphate content. PO:0030123: panicle inflorescence. GO:1902347: response to strigolactone.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os12g0538500	LOC_Os12g35320.1				GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0055062 - phosphate ion homeostasis	TO:0000102 - phosphorus sensitivity, TO:0000357 - growth and development trait, TO:0000457 - total biomass yield	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
19592	_	CDC2	_	cdc2 (cyclin-dependent kinase 2) -like gene			6	LOC_Os06g47310.		Os06g0687600	LOC_Os06g47310.1				GO:0016301 - kinase activity		
19593	_	CDC3	_	cdc2 (cyclin-dependent kinase 2) -like gene			2	LOC_Os02g06380.		Os02g0158500	LOC_Os02g06380.1						
19594	_	Cen8.t00849	_				8	a Cen8 (centromere of chromosome 8) Active Gene.									
19595	LACS1	OsLACS1	LONG-CHAIN ACYL-COA SYNTHETASE 1	long-chain acyl-CoA synthetase 1	LONG-CHAIN ACYL-COA SYNTHETASE 1		5	a rice homologue of A. thaliana wax synthesis-related gene.	 Biochemical character	Os05g0132100	LOC_Os05g04170.4, LOC_Os05g04170.3, LOC_Os05g04170.1, LOC_Os05g04170.2				GO:0031957 - very-long-chain-fatty-acid-CoA ligase activity, GO:0034976 - response to endoplasmic reticulum stress, GO:0010025 - wax biosynthetic process, GO:0010103 - stomatal complex morphogenesis, GO:0009627 - systemic acquired resistance, GO:0010143 - cutin biosynthetic process		
19596	_		_	cyt-RPEase, cytosolic RPEase, cytosolic D-Ribulose-5-phosphate 3-Epimerase			9	LOC_Os09g32810. AF189365. Q9SE42. 	 Biochemical character	Os09g0505700	LOC_Os09g32810.2				GO:0005975 - carbohydrate metabolic process, GO:0046872 - metal ion binding, GO:0004750 - ribulose-phosphate 3-epimerase activity, GO:0005737 - cytoplasm, GO:0006098 - pentose-phosphate shunt		
19597	_	PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp	_	PolI-like DNA polymerase, plastidal DNA polymerase 1			8	AB047689. Q6Z4T5. GO:0071897: DNA biosynthetic process.		Os08g0175300	LOC_Os08g07840.1				GO:0003887 - DNA-directed DNA polymerase activity, GO:0006281 - DNA repair, GO:0008408 - 3'-5' exonuclease activity, GO:0009507 - chloroplast, GO:0009657 - plastid organization, GO:0006261 - DNA-dependent DNA replication, GO:0003677 - DNA binding		PO:0000017 - vascular leaf primordium , PO:0025404 - phyllome marginal meristem , PO:0020147 - root apical meristem , PO:0020148 - shoot apical meristem 
19598	CBT	OsCBT, DLN185, OsDLN185, OsCAMTA5, CAMTA5	CAM-BINDING TRANSCRIPTION FACTOR	CaM-binding transcription factor, DLN repressor 185, DLN motif protein 185, Calmodulin-binding transcriptional activator 5	CAM-BINDING TRANSCRIPTION FACTOR		7	AF499741. Q7XHR2. It is suggested that OsCBT is a transcription activator modulated by CaM (Choi et al. 2005). CAMTA (calmodulin binding transcription activator).	 Other	Os07g0490200	LOC_Os07g30774.1				GO:0005516 - calmodulin binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003712 - transcription cofactor activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0043565 - sequence-specific DNA binding, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003690 - double-stranded DNA binding		PO:0025034 - leaf , PO:0009005 - root 
19599	CAMTA	OsCAMTA, qSCT1, OsCAMTA4, CAMTA4	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, QTL for seedling cold tolerance on chromosome 1, calmodulin-binding transcription activator, Calmodulin-binding transcriptional activator 4	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR		1	one of six rice CBT homologues. OsCAMTA4 in Yu et al. 2024. GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding. PO:0030123: panicle inflorescence.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0923600	LOC_Os01g69910.1, LOC_Os01g69910.2, LOC_Os01g69910.3				GO:0003677 - DNA binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003712 - transcription cofactor activity, GO:0003690 - double-stranded DNA binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0043565 - sequence-specific DNA binding, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0005516 - calmodulin binding	TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009030 - carpel , PO:0025034 - leaf , PO:0009066 - anther 
19600	SCT1	OsSCT1, OsCAMTA1, CAMTA1	SENSING CA2+ TRANSCRIPTION FACTOR 1	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, Sensing Ca2+ Transcription factor 1, Calmodulin-binding transcriptional activator 1	SENSING CA2+ TRANSCRIPTION FACTOR 1	sct1, oscamta1	3	one of six rice CBT homologues. CAMTA (calmodulin binding transcription activator). GO:1904276: regulation of wax biosynthetic process.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0191000	LOC_Os03g09100.1				GO:0003690 - double-stranded DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009408 - response to heat, GO:0019722 - calcium-mediated signaling, GO:0005634 - nucleus, GO:0005516 - calmodulin binding, GO:0003677 - DNA binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003712 - transcription cofactor activity	TO:0000259 - heat tolerance	PO:0009005 - root , PO:0025034 - leaf 
19601	CAMTAPL	OsCAMTAPL	CALMODULIN-BINDING TRANSCRIPTIONAL ACTIVATOR LIKE	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, CAMTA PROTEIN LIKE, Calmodulin-binding transcriptional activator like	CALMODULIN-BINDING TRANSCRIPTIONAL ACTIVATOR LIKE PROTEIN	oscamtapl, oscamtapl-1, oscamtapl-2	3	one of six rice CBT homologues. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity	Os03g0388500	LOC_Os03g27080.1, LOC_Os03g27080.2				GO:0050832 - defense response to fungus, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003712 - transcription cofactor activity, GO:0003690 - double-stranded DNA binding, GO:0005634 - nucleus, GO:0005516 - calmodulin binding	TO:0000357 - growth and development trait, TO:0000074 - blast disease, TO:0000346 - tiller number	
19602	CAMTA4	OsCAMTA4, OsCAMTA6, CAMTA6	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, calmodulin-binding transcription activator, Calmodulin-binding Transcription Activator 4	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4		4	one of six rice CBT homologues. OsCaM1 target gene. OsCAMTA6 in Yu et al. 2024. OsCAMTA4 is involved in the transcriptional regulation of miR156a (Kansal et al. 2021). GO:1902893: regulation of miRNA transcription. 	 Other,  Tolerance and resistance - Stress tolerance	Os04g0388500	LOC_Os04g31900.1				GO:0003712 - transcription cofactor activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0019722 - calcium-mediated signaling, GO:0009414 - response to water deprivation, GO:0005516 - calmodulin binding, GO:0003690 - double-stranded DNA binding	TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009005 - root 
19603	CAMTA6	OsCAMTA6, OsCAMTA3, CAMTA3	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, Calmodulin-binding Transcription Activator 6, Calmodulin-binding transcriptional activator 3	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6	oscamta3, oscamta3-1, oscamta3-2	7	one of six rice CBT homologues. OsCAMTA6 is involved in the transcriptional regulation of miR156a and miR167h (Kansal et al. 2021). OsCAMTA3 in Yu et al. 2024. GO:1902893: regulation of miRNA transcription. GO:1900150: regulation of defense response to fungus.	 Other,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0623100 	LOC_Os07g43030.1				GO:0005516 - calmodulin binding, GO:0003712 - transcription cofactor activity, GO:0003690 - double-stranded DNA binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0043067 - regulation of programmed cell death, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0019722 - calcium-mediated signaling	TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000357 - growth and development trait, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000063 - mimic response	PO:0025034 - leaf , PO:0009005 - root 
19604	CAMTA3	OsCAMTA3, SCT2, OsSCT2, OsCAMTA2, CAMTA2	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3	CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, Calmodulin-binding transcription activator 3, Sensing Ca2+ Transcription factor 2	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3	sct2, oscamta2	10	one of six rice CBT homologues. OsCAMTA2 in Yu et al. 2024.	 Other	Os10g0375600	LOC_Os10g22950.1				GO:0005516 - calmodulin binding, GO:0003712 - transcription cofactor activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0003690 - double-stranded DNA binding		PO:0009005 - root , PO:0025034 - leaf 
19606	_	OsGPCR, GPCR	_	G-protein coupled receptor	_		11	HQ676132. KC609171-KC609183 (O. sativa and wild rice species, partial cds).	 Tolerance and resistance - Stress tolerance	Os06g0199800	LOC_Os06g09930.1				GO:0004888 - transmembrane receptor activity, GO:0007166 - cell surface receptor linked signal transduction, GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
19607	_	orf113	_				Mt	a CMS-associated gene of RT98-CMS. AP012527 (Oryza rufipogon mitochondrial DNA, complete genome, strain: RT98C) : BAN67491.1. The orf113 gene shows chimeric structure to the flanking and coding region of the known mitochondrial gene nad9 (Igarashi et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000232 - cytoplasmic male sterility (sensu Oryza)	
19608	MAX1C	OsMAX1c, MAX1c, Os1500/CYP711A4, Os1500, CYP711A4, OsCYP711A4	MORE AXILLARY GROWTH 1C	MORE AXILLARY GROWTH 1c, Cytochrome P450 711A4	CYTOCHROME P450 711A4		1	one of MAX1 orthologues. JX566699. The tested Os01g0701500 allele is incapable of rescuing any of the tested max1 phenotypes, likely due to a premature stop codon, suggesting that this gene may have lost all function and may be degenerating to become a pseudogene (Challis et al. 2013).	 Biochemical character	Os01g0701500	LOC_Os01g50590.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
19609	MAX1D	OsMAX1D, Os1900/CYP711A5, Os1900, CYP711A5, OsCYP711A5	MORE AXILLARY GROWTH 1D	Cytochrome P450 711A5	CYTOCHROME P450 711A5	os1900	2	one of MAX1 orthologues. JX566700. Os02g0221900 has similar functional capability to AtMAX1 (Challis et al. 2013). GO:1901601: strigolactone biosynthetic process.	 Vegetative organ - Culm,  Biochemical character,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os02g0221900	LOC_Os02g12890.1, LOC_Os02g12890.2				GO:0042594 - response to starvation, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0007584 - response to nutrient, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000492 - leaf shape, TO:0000571 - shoot fresh weight, TO:0000102 - phosphorus sensitivity, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000329 - tillering ability, TO:0000248 - primary macronutrient sensitivity, TO:0000480 - nutrient sensitivity, TO:0002637 - leaf size, TO:0002639 - shoot branching	PO:0008039 - stem base , PO:0009006 - shoot system 
19610	MAX1B	OsMAX1b, MAX1b, Os5100/CYP711A6, Os5100, CYP711A6, Os/CYP711A6	MORE AXILLARY GROWTH 1B	MORE AXILLARY GROWTH 1b, Cytochrome P450 711A6	CYTOCHROME P450 711A6	os5100	6	one of MAX1 orthologues. JX566698. Os06g0565100 has similar functional capability to AtMAX1 (Challis et al. 2013). GO:1901601: strigolactone biosynthetic process.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Biochemical character	Os06g0565100	LOC_Os06g36920.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000329 - tillering ability, TO:0002639 - shoot branching, TO:0002637 - leaf size, TO:0000571 - shoot fresh weight, TO:0000492 - leaf shape, TO:0000346 - tiller number	PO:0009006 - shoot system , PO:0008039 - stem base 
19611	PFK1	OsPFK01, PFK01, OsPFK1	PHOSPHOFRUCTOKINASE 1	phosphofructokinase 1	PHOSPHOFRUCTOKINASE 1		1	group A phosphofructokinase (PKF_A).	 Biochemical character	Os01g0191700 	LOC_Os01g09570.1				GO:0006002 - fructose 6-phosphate metabolic process, GO:0005829 - cytosol, GO:0006096 - glycolysis, GO:0003872 - 6-phosphofructokinase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
19612	PFK2	OsPFK02, PFK02, OsPFK2, OsPFK1	PHOSPHOFRUCTOKINASE 2	phosphofructokinase 2	PHOSPHOFRUCTOKINASE 2		1	group A phosphofructokinase (PKF_A). OsPFK1 in Yang et al. 2022.	 Biochemical character	Os01g0738800	LOC_Os01g53680.1				GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm, GO:0006096 - glycolysis		
19613	PFK5	OsPFK05, PFK05, OsPFK5, OsPFK2	PHOSPHOFRUCTOKINASE 5	phosphofructokinase 5	PHOSPHOFRUCTOKINASE 5		5	group A phosphofructokinase (PKF_A). OsPFK2 in Yang et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0524400 	LOC_Os05g44922.2, LOC_Os05g44922.1				GO:0003872 - 6-phosphofructokinase activity, GO:0005737 - cytoplasm, GO:0006096 - glycolysis, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0034059 - response to anoxia, GO:0005829 - cytosol	TO:0000482 - chemical stress sensitivity	
19614	PFK3	OsPFK03, PFK03, OsPFK3	PHOSPHOFRUCTOKINASE 3	phosphofructokinase 3	PHOSPHOFRUCTOKINASE 3		4	group B phosphofructokinase (PKF_B).	 Biochemical character	Os04g0469500	LOC_Os04g39420.1				GO:0005737 - cytoplasm, GO:0006096 - glycolysis, GO:0006002 - fructose 6-phosphate metabolic process, GO:0046872 - metal ion binding, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding		
19615	PFK7	OsPFK07, PFK07, OsPFK7	PHOSPHOFRUCTOKINASE 7	phosphofructokinase 7	PHOSPHOFRUCTOKINASE 7		8	group C phosphofructokinase (PKF_C). KC620558, KC620557.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0439000 	LOC_Os08g34050.1				GO:0005524 - ATP binding, GO:0006002 - fructose 6-phosphate metabolic process, GO:0006096 - glycolysis, GO:0046872 - metal ion binding, GO:0034059 - response to anoxia, GO:0009536 - plastid, GO:0005737 - cytoplasm, GO:0003872 - 6-phosphofructokinase activity	TO:0000482 - chemical stress sensitivity	
19616	PFK8	OsPFK08, PFK08, OsPFK8	PHOSPHOFRUCTOKINASE 8	phosphofructokinase 8	PHOSPHOFRUCTOKINASE 8		8	group C phosphofructokinase (PKF_C).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0415800	LOC_Os09g24910.1, LOC_Os09g24910.2				GO:0034059 - response to anoxia, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0006002 - fructose 6-phosphate metabolic process, GO:0006096 - glycolysis, GO:0046872 - metal ion binding, GO:0009536 - plastid	TO:0000482 - chemical stress sensitivity	
19617	PFK10	OsPFK10	PHOSPHOFRUCTOKINASE 10	phosphofructokinase 10	PHOSPHOFRUCTOKINASE 10		10	group C phosphofructokinase (PKF_C).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0405600	LOC_Os10g26570.1				GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0034059 - response to anoxia, GO:0046872 - metal ion binding, GO:0009536 - plastid, GO:0006096 - glycolysis	TO:0000482 - chemical stress sensitivity	
19618	PFPA1	OsPFPA1, OsPFP1a1, PFP1a1	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 1	"pyrophosphate-fructose-6-phosphatephosphotransferase
 alpha subunit 1, PFP-alpha subunit 1, catalytic a-subunit 1 of PFP1"	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 1		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0714200	LOC_Os02g48360.2, LOC_Os02g48360.1				GO:0034059 - response to anoxia, GO:0006096 - glycolysis, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity, GO:0046872 - metal ion binding	TO:0000248 - primary macronutrient sensitivity	
19619	PFPA2	OsPFPA2, OsPFP1a2, PFP1a2	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 2	pyrophosphate-fructose-6-phosphatephosphotransferase alpha subunit 2, PFP-alpha subunit 2, catalytic a-subunit 2 of PFP1	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 2		6	pyrophosphate-dependent phosphofructokinase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0326400 	LOC_Os06g22060.5, LOC_Os06g22060.4, LOC_Os06g22060.1, LOC_Os06g22060.2, LOC_Os06g22060.3				GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0009744 - response to sucrose stimulus, GO:0005524 - ATP binding, GO:0003872 - 6-phosphofructokinase activity, GO:0046872 - metal ion binding, GO:0034059 - response to anoxia, GO:0006096 - glycolysis, GO:0006002 - fructose 6-phosphate metabolic process, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity	TO:0000482 - chemical stress sensitivity	
19620	PFPA4	OsPFPA4, OsPFP1a4, PFP1a4	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 4	"pyrophosphate-fructose-6-phosphatephosphotransferase
 alpha subunit 4, PFP-alpha subunit 4, catalytic a-subunit 4 of PFP1"	PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 4		9	KC620559.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0298100 	LOC_Os09g12650.1				GO:0046872 - metal ion binding, GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity, GO:0003872 - 6-phosphofructokinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0006096 - glycolysis, GO:0034058 - endosomal vesicle fusion	TO:0000482 - chemical stress sensitivity	
19621	LYL2	OsGGRII, GGRII, OsGGR2, GGR2	LIGHT-INDUCED YELLOW LEAF 2	Light-Induced Yellow Leaf 2, Geranylgeranyl Reductase II, geranylgeranyl reductase 2			1	LOC_Os01g16020.	 Biochemical character	Os01g0265000 	LOC_Os01g16020.1				GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, GO:0010189 - vitamin E biosynthetic process, GO:0045550 - geranylgeranyl reductase activity, GO:0015979 - photosynthesis, GO:0015995 - chlorophyll biosynthetic process		PO:0005052 - plant callus , PO:0020103 - flag leaf , PO:0020104 - leaf sheath , PO:0025034 - leaf 
19622	SOR1	MHZ2, OsMHZ2, OsSOR1, OsRING272, RING272, OsvWA13, vWA13	SOIL-SURFACE ROOTING 1	soil-surface rooting 1, maohuzi 2, RING-type E3 ubiquitin ligase 272, von Willebrand factor A13		sor1, mhz2, sor1-1, sor1-2	4	AB818510. GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os04g0101800	LOC_Os04g01160.1				GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0008270 - zinc ion binding, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0009630 - gravitropism	TO:0000227 - root length, TO:0000163 - auxin sensitivity, TO:0000173 - ethylene sensitivity, TO:0002693 - gravity response trait	PO:0020127 - primary root 
19623	SSG4	OsSSG4	SUBSTANDARD STARCH GRAIN4	substandard starch grain4, substandard starch grain 4		ssg4, SSG4-1, SSG4-2, SSG4-3	1	a DUF490-Containing Protein. AB856288.	 Coloration - Chlorophyll,  Seed - Morphological traits - Endosperm	Os01g0179400	LOC_Os01g08420.1				GO:0009570 - chloroplast stroma, GO:0009501 - amyloplast	TO:0000266 - chalky endosperm, TO:0000149 - seed width, TO:0000495 - chlorophyll content, TO:0002655 - starch grain size, TO:0002715 - chloroplast development trait	
19626	_	OsLFY, LFY	_	LEAFY				KF051023. a rice ortholog of  AtLFY.	 Other						GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
19627	HWI1	25L1	HYBRID WEAKNESS I 1	LOC_Os11g07225-like 1, Hybrid weakness i1			11	25L1 is the one of two leucine-rich repeat receptor-like kinase (LRR-RLK) genes in Hwi1 locus which induce hybrid weakness (Chen et al. 2014).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Vegetative organ - Root	Os11g0173500	LOC_Os11g07230.1, LOC_Os11g07230.2, LOC_Os11g07230.3				GO:0005886 - plasma membrane, GO:0009755 - hormone-mediated signaling, GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0031625 - ubiquitin protein ligase binding, GO:0046777 - protein amino acid autophosphorylation, GO:0048364 - root development, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0005524 - ATP binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0001653 - peptide receptor activity, GO:0009506 - plasmodesma	TO:0000392 - sterility or fertility trait, TO:0000654 - shoot development trait, TO:0000432 - temperature response trait, TO:0000036 - hybrid incompatibility, TO:0000207 - plant height, TO:0000084 - root number	PO:0007520 - root development stage 
19628	HWI2	Hwi2, OsHWI2, OsSub9, SUB9	HYBRID WEAKNESS I 2	Subtilisin 9, Hybrid weakness i2	SUBTILISIN 9	hwi2	1	a secreted putative subtilisin-like protease. Subtilisin Family (Peptidase_S8; PF00082). (http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml) GO:0090551: response to manganese starvation.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character	Os01g0795400	LOC_Os01g58290.4, LOC_Os01g58290.3, LOC_Os01g58290.2, LOC_Os01g58290.1				GO:0048364 - root development, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity, GO:0010042 - response to manganese ion, GO:0009408 - response to heat	TO:0000392 - sterility or fertility trait, TO:0000207 - plant height, TO:0000654 - shoot development trait, TO:0000036 - hybrid incompatibility, TO:0000084 - root number, TO:0000432 - temperature response trait, TO:0000073 - manganese sensitivity	PO:0009006 - shoot system , PO:0007520 - root development stage 
19631	_	OsDJC31, DJC31	_	type III J protein 31, rice DJC31 homolog			5	a Homolog of Arabidopsis chloroplast J protein. BK008486. OsDJC31 (GenBank accession: BK008486) was re-annotated from the continuous genomic region covered by loci LOC_Os05g31056 and LOC_Os05g31062 (Chiu et al. 2013).		Os05g0374500/Os05g0374600	LOC_Os05g31056.1, LOC_Os05g31062.1				GO:0009507 - chloroplast		
19632	_	OsDJC82, DJC82	_	type III J protein 82, rice DJC82 homolog			5	a Homolog of Arabidopsis chloroplast J protein. BK008487.  The rice DJC82 homologue, OsDJC82 (GenBank accession: BK008487), was re-annotated from original annotation for locus LOC_Os05g33010 (Chiu et al. 2013).		Os05g0397800					GO:0009507 - chloroplast		
19634	_	PPR454, PPR10, PPR2	_	pentatricopeptide repeat (PPR)-encoding gene 454, pentatricopeptide repeat-containing protein 454, pentatricopeptide repeat protein 10, pentatricopeptide repeat motif containing gene 2, PPR motif-containing gene 2		PPR10-454-M, PPR10-454-I, PPR10-454-Z, PPR10-461-N, PPR10-569-93	10	LOC_Os10g35230. AB900791. KJ680251-KJ680253. PPR2 in Ngangkham et al. 2010. PPR10 in Tang et al. 2014. PPR454 in Kazama and Toriyama 2014. 		Os10g0495100	LOC_Os10g35230.1						
19635	_	PPR458, PPR7, PPR4	_	pentatricopeptide repeat (PPR)-encoding gene 458, pentatricopeptide repeat-containing protein 458, pentatricopeptide repeat protein 7, pentatricopeptide repeat motif containing gene 4, PPR motif-containing gene 4		PPR7-454-M, PPR7-458-N, PPR7-458-ZH, PPR7-458-I, PPR7-458-Z, PPR7-458-J	10	LOC_Os10g35260. AB900794. KJ680242-KJ680245. PPR4 in Ngangkham et al. 2010. PPR7 in Tang et al. 2014. PPR458 in Kazama and Toriyama 2014.		Os10g0495400	LOC_Os10g35260.1						
19636	_	PPR782b	_	pentatricopeptide repeat (PPR)-encoding gene 782b, pentatricopeptide repeat-containing protein 782b			10	AB900793.									
19637	WSL		WHITE STRIPE LEAF	white stripe leaf		wsl	1	A Chloroplast-Localized Pentatricopeptide Repeat Protein. KC543701. LOC_Os01g37870. TO:0006060: leaf chlorosis.	 Tolerance and resistance - Stress tolerance	Os01g0559500	LOC_Os01g37870.1, LOC_Os01g37870.2, LOC_Os01g37870.3, LOC_Os01g37870.4				GO:0009651 - response to salt stress, GO:0042254 - ribosome biogenesis, GO:0009737 - response to abscisic acid stimulus, GO:0009658 - chloroplast organization, GO:0009628 - response to abiotic stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0042743 - hydrogen peroxide metabolic process, GO:0008380 - RNA splicing	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0002715 - chloroplast development trait, TO:0000168 - abiotic stress trait	
19638	MIT	OsMIT	MITOCHONDRIAL IRON TRANSPORTER	mitochondrial Fe transporter, mitochondrial iron transporter	MITOCHONDRIAL IRON TRANSPORTER	mit-1, mit-2	3	a predicted lethal-phenotype gene in Lloyd et al. 2015.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0296800	LOC_Os03g18550.1, LOC_Os03g18550.2				GO:0010040 - response to iron(II) ion, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport	TO:0000224 - iron sensitivity	
19639	SUI2	OsSUI2, ES5, OsES5	SHORTENED UPPERMOST INTERNODE 2	Shortened Uppermost Internode 2, early leaf senescence 5		sui2, es5	5	JQ173372. Q6I628. TO:0000755: shoot internode anatomy and morphology trait. OsPSS-1 homolog. a phosphatidylserine synthase (PSS) family protein.	 Biochemical character,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os05g0554400	LOC_Os05g48060.1				GO:0006659 - phosphatidylserine biosynthetic process, GO:0019827 - stem cell maintenance, GO:0006646 - phosphatidylethanolamine biosynthetic process, GO:0005789 - endoplasmic reticulum membrane, GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity, GO:0048831 - regulation of shoot development, GO:0080006 - internode patterning, GO:0010150 - leaf senescence, GO:0007568 - aging, GO:0009658 - chloroplast organization, GO:0016021 - integral to membrane	TO:0000040 - panicle length, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0000455 - seed set percent, TO:0000346 - tiller number, TO:0001015 - photosynthetic rate, TO:0002715 - chloroplast development trait, TO:0000605 - hydrogen peroxide content, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000249 - leaf senescence	PO:0005005 - shoot internode , PO:0007089 - stem elongation stage , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
19640	SUI3	OsSUI3	SHORTENED UPPERMOST INTERNODE 3	Shortened Uppermost Internode 3		sui3	1	JQ173373. Q5N8Q3. TO:0000755: shoot internode anatomy and morphology trait. OsPSS-1 homolog.	 Vegetative organ - Culm,  Biochemical character	Os01g0683500	LOC_Os01g49024.1, LOC_Os01g49020.1				GO:0006659 - phosphatidylserine biosynthetic process, GO:0048831 - regulation of shoot development, GO:0016021 - integral to membrane, GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity, GO:0080006 - internode patterning, GO:0005789 - endoplasmic reticulum membrane, GO:0006646 - phosphatidylethanolamine biosynthetic process	TO:0000145 - internode length, TO:0000207 - plant height	PO:0007089 - stem elongation stage , PO:0005005 - shoot internode 
19641	_		_	ubiquitin 2				HQ340170 (Oryza coarctata).									
19642	_	TGO, tgo	_	transglutaminase, Tgase			4	FR717829, FR717830. LOC Os04g40300.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0479100	LOC_Os04g40300.1				GO:0009416 - response to light stimulus, GO:0003810 - protein-glutamine gamma-glutamyltransferase activity, GO:0009542 - granum	TO:0000075 - light sensitivity	PO:0004001 - bulliform cell 
19643	_	CRR-F	_	"CRR-F element, centromere-specific retrotransposon
of FF genome"				centromere-specific retrotransposon in the O. brachyantha centromeres.							GO:0032196 - transposition		
19644	_	PPR8	_	pentatricopeptide repeat protein 8		PPR8-780-M	10	KJ680246. PPR8, which is located between PPR7 and PPR9, is absent in japonica cultivars.									
19645	_	PPR794, PPR6, PPR6-794, PPR5	_	a 794-aa protein with 17 PPR motifs, pentatricopeptide repeat protein 6, pentatricopeptide repeat protein 794, pentatricopeptide repeat motif containing gene 5, PPR motif-containing gene 5			10	LOC_Os10g35436. AB110443 (indica). AB110444 (japonica).  PPR794 in Komori at al., 2004 and Hu et al. 2013. PPR5 in Ngangkham et al. 2010. PPR6 in Tang et al. 2014.		Os10g0497300	LOC_Os10g35436.1						
19646	_	PPR683, PPR5, PPR5-683	_	a 683-aa protein with 16 PPR motifs, pentatricopeptide repeat protein 5, pentatricopeptide repeat protein 683			10	AB110443 (indica). AB110444 (japonica).									
19647	_	PPR762, PPR4, PPR4-762	_	a 762-aa protein with 17 PPR motifs, pentatricopeptide repeat protein 4			10	AB110443 (indica). PPR4 is absent in japonica cultivars (Tang et al. 2014).									
19648	_	PPR1, PPR1-454	_	a 454-aa protein with PPR motifs, pentatricopeptide repeat protein 1			10										
19649	SMK1	Os_SMK1	SMALL KERNEL 1	Small kernel 1			11	LOC_Os11g10740. KF577931. the rice ortholog of maize SMK1. a pentatricopeptide repeat protein.	 Seed - Physiological traits,  Seed - Morphological traits - Endosperm	Os11g0213500	LOC_Os11g10740.1				GO:0016556 - mRNA modification, GO:0009845 - seed germination, GO:0009790 - embryonic development, GO:0048316 - seed development	TO:0000100 - shrunken endosperm, TO:0000653 - seed development trait, TO:0000620 - embryo development trait, TO:0000266 - chalky endosperm	PO:0007057 - 0 seed germination stage , PO:0020144 - apical meristem , PO:0001170 - seed development stage 
19650	STPS	OsSTPS, OsSTPS2, STPS2, OsEBFS, EBFS, TPS5, OsTPS5	SESQUITERPENE SYNTHASE	sesquiterpene synthase, sesquiterpene synthase 2, sesquiterpene synthase II, E-beta-farnesene synthase, Terpene synthase 5	SESQUITERPENE SYNTHASE		4	KC527594, KC511051, KC511050, KC511049, KC511035, KC511031, KC511029, KC511028, KC511027. KC511057 to KC511068. OsSTPS2 in Kamolsukyeunyong et al. 2019, Li et al. 2023. TPS5 in Sun et al. 2022.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os04g0342100	LOC_Os04g27430				GO:0002213 - defense response to insect	TO:0000454 - stem borer resistance, TO:0000424 - brown planthopper resistance, TO:0000261 - insect damage resistance	
19651	OSCA1.1	OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1	Hyperosmolality-gated calcium-permeable channel 1.1, DUF221 Domain containing Protein 1, reduced hyperosmolality-induced Ca2+ increase 1.1, reduced hyperosmolality-induced [Ca2+]I increase 1.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1	ososca1.1	1	OSCA1 homologue. KJ920371. Oryza brachyantha ortholog: ObOSCA1.1, Oryza glaberrima ortholog: OgOSCA1.1. GO:0090332: stomatal closure.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os01g0534900	LOC_Os01g35050.1, LOC_Os01g35050.2, LOC_Os01g35050.3, LOC_Os01g35050.4				GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0048364 - root development, GO:0030104 - water homeostasis, GO:0009738 - abscisic acid mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009740 - gibberellic acid mediated signaling, GO:0009736 - cytokinin mediated signaling, GO:0009873 - ethylene mediated signaling pathway, GO:0009742 - brassinosteroid mediated signaling, GO:0009734 - auxin mediated signaling pathway, GO:0010118 - stomatal movement, GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane, GO:0050848 - regulation of calcium-mediated signaling, GO:0043575 - detection of osmotic stimulus, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0000656 - root development trait, TO:0000523 - stomatal resistance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000520 - stomatal closure rate, TO:0000136 - relative water content	PO:0007022 - seed imbibition stage , PO:0007520 - root development stage 
19652	OSCA1.2	OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2	Hyperosmolality-gated calcium-permeable channel 1.2, DUF221 Domain containing Protein 6	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2		5	OSCA1 homologue. KJ920372. Electron Microscopy Data Bank under accession code EMD-20017. PDB ID code 6OCE. Oryza brachyantha ortholog: ObOSCA1.2, Oryza glaberrima ortholog: OgOSCA1.2. GO:0090332: stomatal closure.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os05g0594700	LOC_Os05g51630.2, LOC_Os05g51630.1				GO:0030104 - water homeostasis, GO:0010118 - stomatal movement, GO:0009737 - response to abscisic acid stimulus, GO:0007623 - circadian rhythm, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0006560 - proline metabolic process, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000520 - stomatal closure rate, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000136 - relative water content	PO:0007022 - seed imbibition stage 
19653	OSCA1.4	OsOSCA1.4, OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.4	Hyperosmolality-gated calcium-permeable channel 1.4, DUF221 Domain containing Protein 8, reduced hyperosmolality-induced Ca2+ increase 1.4	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.4		10	OSCA1 homologue. KJ920374. Oryza brachyantha ortholog: ObOSCA1.4, Oryza glaberrima ortholog: OgOSCA1.4.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed	Os10g0579100	LOC_Os10g42820.1, LOC_Os10g42820.2				GO:0009737 - response to abscisic acid stimulus, GO:0043575 - detection of osmotic stimulus, GO:0006970 - response to osmotic stress, GO:0009506 - plasmodesma, GO:0009414 - response to water deprivation, GO:0005262 - calcium channel activity, GO:0006874 - cellular calcium ion homeostasis, GO:0005886 - plasma membrane, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0005794 - Golgi apparatus	TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0001170 - seed development stage 
19654	OSCA2.1	OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1	Hyperosmolality-gated calcium-permeable channel 2.1, DUF221 Domain containing Protein 10, reduced hyperosmolality-induced Ca2+ increase 2.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1		12	OSCA1 homologue. KJ920375. Oryza brachyantha ortholog: ObOSCA2.1, Oryza glaberrima ortholog: OgOSCA2.1. GO:0090332: stomatal closure.	 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os12g0633600	LOC_Os12g43720.1				GO:0010118 - stomatal movement, GO:0009651 - response to salt stress, GO:0005783 - endoplasmic reticulum, GO:0048364 - root development, GO:0030104 - water homeostasis, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0006970 - response to osmotic stress	TO:0000520 - stomatal closure rate, TO:0000136 - relative water content, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity	PO:0007022 - seed imbibition stage , PO:0007520 - root development stage 
19655	OSCA2.2	OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.2	Hyperosmolality-gated calcium-permeable channel 2.2, DUF221 Domain containing Protein 3, reduced hyperosmolality-induced Ca2+ increase 2.2	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.2		3	OSCA1 homologue. KJ920376. Oryza brachyantha ortholog: ObOSCA2.2, Oryza glaberrima ortholog: OgOSCA2.2. GO:0090332: stomatal closure.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Biochemical character	Os03g0673800	LOC_Os03g47070.1, LOC_Os03g47070.2				GO:0006970 - response to osmotic stress, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0007623 - circadian rhythm, GO:0009651 - response to salt stress, GO:0030104 - water homeostasis, GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0010118 - stomatal movement	TO:0000276 - drought tolerance, TO:0000136 - relative water content, TO:0000520 - stomatal closure rate, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage 
19656	OSCA2.3	OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3	Hyperosmolality-gated calcium-permeable channel 2.3, DUF221 Domain containing Protein 4, reduced hyperosmolality-induced Ca2+ increase 2.3	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3		3	OSCA1 homologue. KJ920377. Oryza brachyantha ortholog: ObOSCA2.3, Oryza glaberrima ortholog: OgOSCA2.3	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0726300	LOC_Os03g51620.1				GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
19657	OSCA2.4	OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4	Hyperosmolality-gated calcium-permeable channel 2.4, DUF221 Domain containing Protein 9, reduced hyperosmolality-induced Ca2+ increase 2.4	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4		12	OSCA1 homologue. KJ920378. Oryza brachyantha ortholog: ObOSCA2.4, Oryza glaberrima ortholog: OgOSCA2.4	 Seed,  Biochemical character	Os12g0582800	LOC_Os12g39320.1				GO:0048316 - seed development, GO:0006970 - response to osmotic stress, GO:0005783 - endoplasmic reticulum, GO:0009737 - response to abscisic acid stimulus, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0016020 - membrane	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
19658	ERD4	OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2	EARLY RESPONSIVE TO DEHYDRATION 4	Hyperosmolality-gated calcium-permeable channel 3.1, OSCA channels 3.1, Early Responsive to Dehydration 4, DUF221 Domain containing Protein 7, reduced hyperosmolality-induced Ca2+ increase 3.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 3.1		7	OSCA1 homologue. KJ920380. Oryza brachyantha ortholog: ObOSCA3.1, Oryza glaberrima ortholog: OgOSCA3.1. GO:0090332: stomatal closure.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0150100	LOC_Os07g05570.2, LOC_Os07g05570.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0005774 - vacuolar membrane, GO:0010118 - stomatal movement, GO:0030104 - water homeostasis, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0009941 - chloroplast envelope, GO:0005783 - endoplasmic reticulum, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000136 - relative water content, TO:0000520 - stomatal closure rate, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
19659	OSCA4.1	OsOSCA4.1, OsIOSCA4.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1	Hyperosmolality-gated calcium-permeable channel 4.1	HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1		3	OSCA1 homologue. KJ920381. LOC_Os03g04450. Oryza brachyantha ortholog: ObOSCA4.1, two orthologues of OSCA4.1 in Oryza glaberrima: OgOSCA4.1_1 and OgOSCA4.1_2.	 Biochemical character,  Seed,  Tolerance and resistance - Stress tolerance	Os03g0137400	LOC_Os03g04450.1				GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0006001 - fructose catabolic process, GO:0005622 - intracellular, GO:0048316 - seed development, GO:0006623 - protein targeting to vacuole	TO:0000653 - seed development trait, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0007022 - seed imbibition stage , PO:0001170 - seed development stage 
19660	C2DP16	OsGAP1, GAP1, OsC2DP16	C2 DOMAIN-CONTAINING PROTEIN 16	GTPase-activating protein 1, C2 Domain-Containing Protein 16	C2 DOMAIN-CONTAINING PROTEIN 16		2	Q6YWF1. EF584506. a plant-specific C2-domain protein. GO:1902479: positive regulation of defense response to bacterium, incompatible interaction. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0327000	LOC_Os02g22130.1				GO:0009611 - response to wounding, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0005096 - GTPase activator activity, GO:0009738 - abscisic acid mediated signaling, GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0008289 - lipid binding, GO:0010039 - response to iron ion, GO:0043547 - positive regulation of GTPase activity	TO:0000224 - iron sensitivity, TO:0000315 - bacterial disease resistance, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance	PO:0009089 - endosperm , PO:0020103 - flag leaf 
19661	_	PPR1	_	pentatricopeptide repeat motif containing gene 1, PPR motif-containing gene 1			10	LOC_Os10g35090.		Os10g0493100 	LOC_Os10g35090.1						
19662	_	PPR8	_	pentatricopeptide repeat motif containing gene 8, PPR motif-containing gene 8			10	LOC_Os10g35730.		Os10g0501000 	LOC_Os10g35730.1				GO:0005739 - mitochondrion		
19663	_	PPR9	_	pentatricopeptide repeat motif containing gene 9, PPR motif-containing gene 9			10	LOC_Os10g35750.		Os10g0501200 	LOC_Os10g35750.1						
19664	_	PPR10	_	pentatricopeptide repeat motif containing gene 10, PPR motif-containing gene 10			10	LOC_Os10g35760.		Os10g0501300	LOC_Os10g35760.1, LOC_Os10g35760.2						
19665	_	PPR11	_	pentatricopeptide repeat motif containing gene 11, PPR motif-containing gene 11			10	LOC_Os10g35790.		Os10g0501700 	LOC_Os10g35790.1						
19666	_	PPR12	_	pentatricopeptide repeat motif containing gene 12, PPR motif-containing gene 12			10	LOC_Os10g36190.		Os10g0506000 	LOC_Os10g36190.1						
19667	_	PPR13	_	pentatricopeptide repeat motif containing gene 13, PPR motif-containing gene 13			10	LOC_Os10g40920.		Os10g0558600 	LOC_Os10g40920.1						
19668	_		_	rice DJA5 homolog			3	a Homolog of Arabidopsis chloroplast J protein. LOC_Os03g12236.		Os03g0222700	LOC_Os03g12236.1, LOC_Os03g12236.2						
19669	_		_	rice DJA7 homolog			5	a Homolog of Arabidopsis chloroplast J protein. LOC_Os05g26914 (not found in MSU Rice Genome Annotation Project Release 7 data) .									
19670	_		_	rice DJC75 homolog			11	a Homolog of Arabidopsis chloroplast J protein. LOC_Os11g10990.		Os11g0216100 	LOC_Os11g10990.1				GO:0009507 - chloroplast		
19671	_		_				10	a rice ortholog of Arabidopsis EFR.	 Biochemical character	Os10g0337400	LOC_Os10g19160.1				GO:0046777 - protein amino acid autophosphorylation, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009755 - hormone-mediated signaling, GO:0001653 - peptide receptor activity, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0031625 - ubiquitin protein ligase binding, GO:0009506 - plasmodesma, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway		
19672	_	Xa21, OsXA21, OsXA21-C11, XA21-C11	_	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21			11	U37133. AY885769-AY885800 and DQ374726-DQ374747  (O. sativa and other wild rice species, partial cds).  a putative leucine-rich repeat receptor-like serine/threonine-protein kinase.							GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
19673	SGN3A	OsSGN3a, SGN3a	SCHENGEN 3A	SCHENGEN3a	SCHENGEN 3A		7	a rice ortholog of Arabidopsis GSO1/GSO2.		Os07g0498400	LOC_Os07g31500.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0031625 - ubiquitin protein ligase binding, GO:0005886 - plasma membrane, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0046777 - protein amino acid autophosphorylation, GO:0009755 - hormone-mediated signaling, GO:0016021 - integral to membrane, GO:0009506 - plasmodesma, GO:0001653 - peptide receptor activity		
19674	PEPR1	OsPEPR1	PEP RECEPTOR 1	Pep receptor 1	PEP RECEPTOR 1		8	a rice ortholog of Arabidopsis PEPR1.	 Tolerance and resistance - Insect resistance	Os08g0446200	LOC_Os08g34640.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009625 - response to insect, GO:0004674 - protein serine/threonine kinase activity	TO:0000261 - insect damage resistance	
19675	_		_				1	a rice ortholog of Arabidopsis HAESA.		Os01g0239700	LOC_Os01g13800.1				GO:0031625 - ubiquitin protein ligase binding, GO:0009755 - hormone-mediated signaling, GO:0046777 - protein amino acid autophosphorylation, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma, GO:0001653 - peptide receptor activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity		
19676	PSKR1	OsPSKR1, OsPSKR10, PSKR10	PHYTOSULFOKINE RECEPTOR 1 	phytosulfokine receptor 1, Phytosulfokine Receptor 10	PHYTOSULFOKINE RECEPTOR 1 		2	a rice ortholog of Petunia inflata PRK1. a rice ortholog of D. carota PRK. OsPSKR10 in Nagar et al. 2020.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0629400 	LOC_Os02g41890.1				GO:0042742 - defense response to bacterium, GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009863 - salicylic acid mediated signaling pathway, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus	TO:0000656 - root development trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000203 - bacterial leaf streak disease resistance	PO:0007520 - root development stage , PO:0009005 - root 
19677	_		_				7	a rice ortholog of Arabidopsis RPK1.		Os07g0602700	LOC_Os07g41140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
19678	MRLK38	OsMRLK38	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 38		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 38		5	a rice ortholog of Arabidopsis SIRK.		Os05g0525600 	LOC_Os05g44990.1				GO:0046777 - protein amino acid autophosphorylation, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0031625 - ubiquitin protein ligase binding, GO:0009755 - hormone-mediated signaling, GO:0001653 - peptide receptor activity, GO:0005524 - ATP binding, GO:0009506 - plasmodesma, GO:0005886 - plasma membrane		
19679	_		_				2	a rice ortholog of Arabidopsis SCM.		Os02g0136900	LOC_Os02g04430.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
19680	_	Gsp-1, GSP-1	_	grain softness protein 1				HE663227.									
19681	_	Ord	_	oxidoreductase			10	KC611153-KC611163 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os10g0403700	LOC_Os10g26390.1, LOC_Os10g26400.1, LOC_Os10g26400.2				GO:0016491 - oxidoreductase activity		
19682	_	RbH	_				11	KC610964-KC610976 (O. sativa and wild rice species, partial cds).	 Biochemical character	Os11g0153900	LOC_Os11g05570.1				GO:0004523 - ribonuclease H activity, GO:0003723 - RNA binding		
19683	CCR12	CCR1, OsCCR1, OsCCR12	CINNAMOYL-COA REDUCTASE 12	cinnamoyl-CoA reductase 1, cinnamoyl-CoA reductase 12	CINNAMOYL-COA REDUCTASE 12		2	KC610831-KC610843 (O. sativa and wild rice species, partial ads). OsCCR1 in Zhu et al. 2014.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0811400	LOC_Os02g56680.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
19684	_	AGM1	_				7	KC609217-KC609229 (O. sativa and wild rice species, partial cds). Q6ZDQ1. 	 Biochemical character	Os07g0195400	LOC_Os07g09720.1				GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0000287 - magnesium ion binding, GO:0004610 - phosphoacetylglucosamine mutase activity, GO:0005975 - carbohydrate metabolic process, GO:0000719 - photoreactive repair, GO:0009411 - response to UV, GO:0009506 - plasmodesma, GO:0005829 - cytosol, GO:0005739 - mitochondrion		
19685	_	ATL3I, OsHIGD1, HIGD1	_	Hypoxia-Induced Gene Domain 1, Hypoxia-Induced Gene Domain Protein 1			9	KC609197-KC609206 (O. sativa and wild rice species, partial cds). LOC_Os09g20900.		Os09g0375900	LOC_Os09g20900.1				GO:0016021 - integral to membrane		PO:0009010 - seed , PO:0025034 - leaf 
19686	_	Arf75	_	auxin response factor 75			3	KC609120-KC609132 (O. sativa and wild rice species, intron 7). GO:0071479: cellular response to ionizing radiation. GO:0090305: nucleic acid phosphodiester bond hydrolysis.		Os03g0345100	LOC_Os03g22450.1				GO:0000076 - DNA replication checkpoint, GO:0008408 - 3'-5' exonuclease activity, GO:0030896 - checkpoint clamp complex, GO:0031573 - intra-S DNA damage checkpoint, GO:0006281 - DNA repair		
19687	_	Dad	_	dihydroxy-acid dehydratase			8	KC609061-KC609073 (O. sativa and wild rice species, partial cds). 	 Biochemical character	Os08g0559600	LOC_Os08g44530.1				GO:0009082 - branched chain family amino acid biosynthetic process, GO:0009570 - chloroplast stroma, GO:0004160 - dihydroxy-acid dehydratase activity, GO:0005507 - copper ion binding, GO:0009555 - pollen development, GO:0009220 - pyrimidine ribonucleotide biosynthetic process		
19688	_	Amt	_	aminomethyltransferase			4	KC609048-KC609060 (O. sativa and wild rice species, intron 1). 	 Biochemical character	Os04g0623800	LOC_Os04g53230.1				GO:0040007 - growth, GO:0016020 - membrane, GO:0022626 - cytosolic ribosome, GO:0006546 - glycine catabolic process, GO:0010075 - regulation of meristem growth, GO:0008361 - regulation of cell size, GO:0007389 - pattern specification process, GO:0048481 - ovule development, GO:0042744 - hydrogen peroxide catabolic process, GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope, GO:0008483 - transaminase activity, GO:0009926 - auxin polar transport, GO:0016117 - carotenoid biosynthetic process, GO:0009658 - chloroplast organization, GO:0019344 - cysteine biosynthetic process, GO:0048046 - apoplast, GO:0010015 - root morphogenesis, GO:0004047 - aminomethyltransferase activity, GO:0009570 - chloroplast stroma		
19689	_	BEL1, OsBEL, BEL	_	bell-like homeodomain protein, BELL1 homolog			6	KC609035-KC609047 (O. sativa and wild rice species, partial cds). AB218895.	 Other	Os06g0108900	LOC_Os06g01934.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
19690	LECRK2	OsLecRK2, LecRK2, SDRLK-LecRK2, OsSDRLK-LecRK2	LECTIN RECEPTOR KINASE 2	Lectin Receptor Kinase 2, S-Domain receptor like kinase-LecRK2	LECTIN RECEPTOR KINASE 2		4	KF748965-KF748972 (indica). Os04g0202350 (in Ncbi and UniProt).	 Tolerance and resistance - Insect resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0202300	LOC_Os04g12560.1				GO:0002213 - defense response to insect, GO:0001653 - peptide receptor activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0046777 - protein amino acid autophosphorylation, GO:0009755 - hormone-mediated signaling, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0009506 - plasmodesma, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0031625 - ubiquitin protein ligase binding, GO:0016020 - membrane, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway	TO:0000424 - brown planthopper resistance, TO:0000524 - submergence tolerance	PO:0009046 - flower , PO:0009010 - seed , PO:0009005 - root , PO:0009006 - shoot system , PO:0025034 - leaf 
19691	SDRLK64	OsLecRK paralog, SDRLK-64, OsSDRLK-64, OsSDRLK64	S-DOMAIN RECEPTOR-LIKE KINASE 64	Lectin Receptor Kinase paralog, S-Domain receptor like kinase-64	S-DOMAIN RECEPTOR-LIKE KINASE 64		6	one of two paralogous genes sharing the highest sequence similarities to OsLecRK1-OsLecRK4.	 Biochemical character	Os06g0620200	LOC_Os06g41560.1				GO:0005524 - ATP binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0001653 - peptide receptor activity, GO:0009506 - plasmodesma, GO:0009755 - hormone-mediated signaling, GO:0031625 - ubiquitin protein ligase binding, GO:0046777 - protein amino acid autophosphorylation, GO:0048544 - recognition of pollen, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0005886 - plasma membrane		PO:0009046 - flower , PO:0009010 - seed 
19692	SDRLK56	OsLecRK paralog, SDRLK-56, OsSDRLK-56, OsSDRLK56	S-DOMAIN RECEPTOR-LIKE KINASE 56	Lectin Receptor Kinase paralog, S-Domain receptor like kinase-56	S-DOMAIN RECEPTOR-LIKE KINASE 56		8	one of two paralogous genes sharing the highest sequence similarities to OsLecRK1-OsLecRK4.	 Biochemical character	Os08g0230800 	LOC_Os08g13420.1				GO:0046777 - protein amino acid autophosphorylation, GO:0031625 - ubiquitin protein ligase binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0009506 - plasmodesma, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0005886 - plasma membrane, GO:0001653 - peptide receptor activity, GO:0009755 - hormone-mediated signaling, GO:0005524 - ATP binding		PO:0025034 - leaf 
19693	MIR169R	miR169r, osa-miR169r, osa-MIR169r, osa-miR169r-3p osa-miR169r-5p	MICRORNA169R	MICRORNA169r, osa-miRNA169r	_		3	miRBASE accession: MI0006973. LM380732, LM383206.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19694	MIR1861O	miR1861o, osa-miR1861o, osa-MIR1861o	MICRORNA1861O	osa-miRNA1861o	_			miRBASE accession: MI0026006. LM383294.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19695	MIR1862F	miR1862f, osa-miR1862f, osa-MIR1862f	MICRORNA1862F	MICRORNA1862f, osa-miRNA1862f	_			miRBASE accession: MI0017248. LM382517.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19696	MIR3980A	miR3980a, osa-miR3980a, osa-MIR3980a, osa-miR3980a-3p, osa-miR3980a-5p	MICRORNA3980A	MICRORNA3980a, osa-miRNA3980a	_			miRBASE accession: MI0017252. LM382522, LM382521.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19697	MIR3980B	miR3980b, osa-miR3980b, osa-MIR3980b, osa-miR3980a-3p, osa-miR3980a-5p	MICRORNA3980B	MICRORNA3980b, osa-miRNA3980b	_			miRBASE accession: MI0017253. LM382524, LM382523.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19698	MIR5490	miR5490, Osa-miR5490, OsmiR5490	MICRORNA5490	MICRORNA5490, osa-miRNA5490, os-miRNA5490	_		11	miRBASE accession: MI0019008. LM382918.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19699	MIR5493	miR5493, Osa-miR5493, OsmiR5493	MICRORNA5493	MICRORNA5493, osa-miRNA5493, os-miRNA5493	_		2	miRBASE accession: MI0019011. LM382919. Target: OsSLAC (Os01g0226600), OsBT1-1 (Os02g0202400). 	 Other,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Seed,  Tolerance and resistance - Stress tolerance						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0010581 - regulation of starch biosynthetic process, GO:0046686 - response to cadmium ion, GO:0010431 - seed maturation	TO:0000396 - grain yield, TO:0002661 - seed maturation, TO:0006032 - panicle size	PO:0007632 - seed maturation stage 
19700	MIR5498	miR5498, Osa-miR5498, OsmiR5498	MICRORNA5498	MICRORNA5498, osa-miRNA5498, os-miRNA5498	_		4	miRBASE accession: MI0019016. LM382920.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19701	MIR5502	miR5502, Osa-miR5502, OsmiR5502	MICRORNA5502	MICRORNA5502, osa-miRNA5502, os-miRNA5502	_		5	miRBASE accession: MI0019020. LM382921.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19702	MIR5503	miR5503, Osa-miR5503, OsmiR5503	MICRORNA5503	MICRORNA5503, osa-miRNA5503, os-miRNA5503	_		8	miRBASE accession: MI0019021. LM382922.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19703	MIR5504	miR5504, Osa-miR5504, OsmiR5504	MICRORNA5504	MICRORNA5504, osa-miRNA5504, os-miRNA5504	_		10	miRBASE accession: MI0019022. LM382923.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19704	MIR5505	miR5505, Osa-miR5505, OsmiR5505	MICRORNA5505	MICRORNA5505, osa-miRNA5505, os-miRNA5505	_		12	miRBASE accession: MI0019023. LM382924.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19705	MIR5512A	miR5512a, Osa-miR5512a, OsmiR5512a	MICRORNA5512A	MICRORNA5512a, osa-miRNA5512a, os-miRNA5512a	_		4	miRBASE accession: MI0019030. LM382926.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19706	MIR5522	miR5522, Osa-miR5522, OsmiR5522	MICRORNA5522	MICRORNA5522, osa-miRNA5522, os-miRNA5522	_		4	miRBASE accession: MI0019041. LM382928.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19707	MIR5525	miR5525, Osa-miR5525, OsmiR5525	MICRORNA5525	MICRORNA5525, osa-miRNA5525, os-miRNA5525	_		9	miRBASE accession: MI0019045. LM382929.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19708	MIR5526	miR5526, Osa-miR5526, OsmiR5526	MICRORNA5526	MICRORNA5526, osa-miRNA5526, os-miRNA5526	_		10	miRBASE accession: MI0019046. LM382930.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19709	MIR5532	miR5532, Osa-miR5532, OsmiR5532	MICRORNA5532	MICRORNA5532, osa-miRNA5532, os-miRNA5532	_		4	miRBASE accession: MI0019052. LM382931.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19710	MIR5534A	miR5534a, Osa-miR5534a, OsmiR5534a	MICRORNA5534A	MICRORNA5534a, osa-miRNA5534a, os-miRNA5534a	_		11	miRBASE accession: MI0019054. LM382932.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19711	MIR5535	miR5535, Osa-miR5535, OsmiR5535	MICRORNA5535	MICRORNA5535, osa-miRNA5535, os-miRNA5535	_		12	miRBASE accession: MI0019056. LM382933.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19712	MIR5536	miR5536, Osa-miR5536, OsmiR5536	MICRORNA5536	MICRORNA5536, osa-miRNA5536, os-miRNA5536	_		9	miRBASE accession: MI0019057. LM382934.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19713	MIR5537	miR5537, Osa-miR5537, OsmiR5537	MICRORNA5537	MICRORNA5537, osa-miRNA5537, os-miRNA5537	_		10	miRBASE accession: MI0019058. LM382935.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19714	MIR5538	miR5538, Osa-miR5538, OsmiR5538	MICRORNA5538	MICRORNA5538, osa-miRNA5538, os-miRNA5538	_		10	miRBASE accession: MI0019059. LM382936.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19715	MIR5539A	miR5539a, Osa-miR5539a, OsmiR5539a	MICRORNA5539A	MICRORNA5539a, osa-miRNA5539a, os-miRNA5539a	_		12	miRBASE accession: MI0019060. LM382937.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19716	MIR5539B	miR5539b, Osa-miR5539b, OsmiR5539b	MICRORNA5539B	MICRORNA5539b, osa-miRNA5539b, os-miRNA5539b	_		12	miRBASE accession: MI0026008. LM383295.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19717	MIR5540	miR5540, Osa-miR5540, OsmiR5540	MICRORNA5540	MICRORNA5540, osa-miRNA5540, os-miRNA5540	_		1	miRBASE accession: MI0019061. LM382938.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19718	MIR5542	miR5542, Osa-miR5542, OsmiR5542	MICRORNA5542	MICRORNA5542, osa-miRNA5542, os-miRNA5542	_		4	miRBASE accession: MI0019063. LM382939.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19719	MIR6249B	miR6249b, Osa-miR6249b, OsmiR6249b	MICRORNA6249B	MICRORNA6249b, osa-miRNA6249b, os-miRNA6249b	_		4	miRBASE accession: MI0026009. LM383296.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19720	MIR812K	miR812k, Osa-miR812k, OsmiR812k	MICRORNA812K	MICRORNA812k, osa-miRNA812k, os-miRNA812k	_			miRBASE accession: MI0017245. LM382514.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19721	MIR812L	miR812l, Osa-miR812l, OsmiR812l	MICRORNA812L	MICRORNA812l, osa-miRNA812l, os-miRNA812l	_			miRBASE accession: MI0017246. LM382515.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19722	MIR812O	miR812o, Osa-miR812o, OsmiR812o, osa-miR812o-3p osa-miR812o-5p	MICRORNA812O	MICRORNA812o, osa-miRNA812o, os-miRNA812o	_			miRBASE accession: MI0017255. LM382528, LM382527.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19723	MIR1437B	miR1437b, osa-miR1437b, osa-MIR1437b	MICRORNA1437B	MICRORNA1437b, osa-miRNA1437b	_		8	miRBASE accession: MI0025198.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19724	MIR7692	miR7692, osa-miR7692, osa-MIR7692	MICRORNA7692	MICRORNA7692, osa-miRNA7692	_		1	miRBASE accession: MI0025199.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19725	MIR7693	miR7693, osa-miR7693, osa-MIR7693	MICRORNA7693	MICRORNA7693, osa-miRNA7693	_		12	miRBASE accession: MI0025200.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19726	MIR7694	miR7694, osa-miR7694, osa-MIR7694	MICRORNA7694	MICRORNA7694, osa-miRNA7694	_		10	miRBASE accession: MI0025201.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19727	MIR7695	miR7695, osa-miR7695, osa-MIR7695	MICRORNA7695	MICRORNA7695, osa-miRNA7695	_		1	miRBASE accession: MI0025202. miR7695 negatively regulates the expression of the shortest transcript variant of Nramp6 (Campo et al. 2013). GO:1900150: regulation of defense response to fungus. TO:0020089: iron content trait.	 Tolerance and resistance - Disease resistance,  Other						GO:0006379 - mRNA cleavage, GO:0050832 - defense response to fungus, GO:0051707 - response to other organism, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0009814 - defense response, incompatible interaction	TO:0000074 - blast disease, TO:0000112 - disease resistance	
19728	MIR169Q	miR169q, osa-miR169q, osa-MIR169q	MICRORNA169Q	MICRORNA169q, osa-miRNA169q	_		8	miRBASE accession: MI0025202.	 Other						GO:0006379 - mRNA cleavage, GO:0009814 - defense response, incompatible interaction, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0051707 - response to other organism	TO:0000112 - disease resistance	
19729	MIR2907A	miR2907a, osa-miR2907a, osa-MIR2907a	MICRORNA2907A	MICRORNA2907a, osa-miRNA2907a	_		3	miRBASE accession: MI0013247.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19730	MIR2275C	miR2275c, osa-miR2275c, osa-MIR2275c	MICRORNA2275C	MICRORNA2275c, osa-miRNA2275c	_		7	miRBASE accession: MI0019032.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19731	MIR5484	miR5484, osa-miR5484, osa-MIR5484	MICRORNA5484	MICRORNA5484, osa-miRNA5484	_		2	miRBASE accession: MI0019002.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19732	MIR5486	miR5486, osa-miR5486, osa-MIR5486	MICRORNA5486	MICRORNA5486, osa-miRNA5486	_		3	miRBASE accession: MI0019004.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19733	MIR5487	miR5487, osa-miR5487, osa-MIR5487	MICRORNA5487	MICRORNA5487, osa-miRNA5487	_		4	miRBASE accession: MI0019005. target: OsGns9 (Os02g0771700).	 Other,  Reproductive organ						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009555 - pollen development, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		PO:0001007 - pollen development stage 
19734	MIR5489	miR5489, osa-miR5489, osa-MIR5489	MICRORNA5489	MICRORNA5489, osa-miRNA5489	_		11	miRBASE accession: MI0019007.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19735	MIR5492	miR5492, osa-miR5492, osa-MIR5492	MICRORNA5492	MICRORNA5492, osa-miRNA5492	_		6	miRBASE accession: MI0019010.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19736	MIR5494	miR54924, osa-miR5494, osa-MIR5494	MICRORNA5494	MICRORNA5494, osa-miRNA5494	_		1	miRBASE accession: MI0019012.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19737	MIR5495	miR54925, osa-miR5495, osa-MIR5495	MICRORNA5495	MICRORNA5495, osa-miRNA5495	_		2	miRBASE accession: MI0019013.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19738	MIR5496	miR54926, osa-miR5496, osa-MIR5496	MICRORNA5496	MICRORNA5496, osa-miRNA5496	_		2	miRBASE accession: MI0019014.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19739	MIR5497	miR54927, osa-miR5497, osa-MIR5497	MICRORNA5497	MICRORNA5497, osa-miRNA5497	_		3	miRBASE accession: MI0019015.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19740	MIR5499	miR54929, osa-miR5499, osa-MIR5499	MICRORNA5499	MICRORNA5499, osa-miRNA5499	_		4	miRBASE accession: MI0019017.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19741	MIR5500	miR5500, osa-miR5500, osa-MIR5500	MICRORNA5500	MICRORNA5500, osa-miRNA5500	_		4	miRBASE accession: MI0019018.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19742	MIR5501	miR5501, osa-miR5501, osa-MIR5501	MICRORNA5501	MICRORNA5501, osa-miRNA5501	_		4	miRBASE accession: MI0019019.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19743	MIR5506	miR5506, osa-miR5506, osa-MIR5506	MICRORNA5506	MICRORNA5506, osa-miRNA5506	_		12	miRBASE accession: MI0019024.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19744	MIR5507	miR5507, osa-miR5507, osa-MIR5507	MICRORNA5507	MICRORNA5507, osa-miRNA5507	_		12	miRBASE accession: MI0019025.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19745	MIR5509	miR5509, osa-miR5509, osa-MIR5509	MICRORNA5509	MICRORNA5509, osa-miRNA5509	_		11	miRBASE accession: MI0019027.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19746	MIR5510	miR5510, osa-miR5510, osa-MIR5510	MICRORNA5510	MICRORNA5510, osa-miRNA5510	_		12	miRBASE accession: MI0019028.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19747	MIR5511	miR5511, osa-miR5511, osa-MIR5511	MICRORNA5511	MICRORNA5511, osa-miRNA5511	_		4	miRBASE accession: MI0019029.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19748	MIR5514	miR5514, osa-miR5514, osa-MIR5514	MICRORNA5514	MICRORNA5514, osa-miRNA5514	_		2	miRBASE accession: MI0019033.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19749	MIR5515	miR5515, osa-miR5515, osa-MIR5515	MICRORNA5515	MICRORNA5515, osa-miRNA5515	_		4	miRBASE accession: MI0019034.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19750	MIR5517	miR5517, osa-miR5517, osa-MIR5517	MICRORNA5517	MICRORNA5517, osa-miRNA5517	_		6	miRBASE accession: MI0019036.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19751	MIR5518	miR5518, osa-miR5518, osa-MIR5518	MICRORNA5518	MICRORNA5518, osa-miRNA5518	_		7	miRBASE accession: MI0019037.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19752	MIR5521	miR5521, osa-miR5521, osa-MIR5521	MICRORNA5521	MICRORNA5521, osa-miRNA5521	_		1	miRBASE accession: MI0019040.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19753	MIR5523	miR5523, osa-miR5523, osa-MIR5523	MICRORNA5523	MICRORNA5523, osa-miRNA5523	_		4	miRBASE accession: MI0019042.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19754	MIR5524	miR5524, osa-miR5524, osa-MIR5524	MICRORNA5524	MICRORNA5524, osa-miRNA5524	_		9	miRBASE accession: MI0019044.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19755	MIR5527	miR5527, osa-miR5527, osa-MIR5527	MICRORNA5527	MICRORNA5527, osa-miRNA5527	_		11	miRBASE accession: MI0019047.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19756	MIR5528	miR5528, osa-miR5528, osa-MIR5528	MICRORNA5528	MICRORNA5528, osa-miRNA5528	_		11	miRBASE accession: MI0019048.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19757	MIR5529	miR5529, osa-miR5529, osa-MIR5529	MICRORNA5529	MICRORNA5529, osa-miRNA5529	_		11	miRBASE accession: MI0019049.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19758	MIR5530	miR5530, osa-miR5530, osa-MIR5530	MICRORNA5530	MICRORNA5530, osa-miRNA5530	_		12	miRBASE accession: MI0019050.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19759	MIR5531	miR5531, osa-miR5531, osa-MIR5531	MICRORNA5531	MICRORNA5531, osa-miRNA5531	_		3	miRBASE accession: MI0019051.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19760	MIR5534B	miR5534b, osa-miR5534b, osa-MIR5534b	MICRORNA5534B	MICRORNA5534b, osa-miRNA5534b	_		11	miRBASE accession: MI0019055.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19761	MIR5541	miR5541, osa-miR5541, osa-MIR5541	MICRORNA5541	MICRORNA5541, osa-miRNA5541	_		2	miRBASE accession: MI0019062.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19762	MIR5543	miR5543, osa-miR5543, osa-MIR5543	MICRORNA5543	MICRORNA5543, osa-miRNA5543	_		4	miRBASE accession: MI0019064.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19763	MIR5544	miR5544, osa-miR5544, osa-MIR5544	MICRORNA5544	MICRORNA5544, osa-miRNA5544	_		2	miRBASE accession: MI0019065.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19764	MIR5790	miR5790, osa-miR5790, osa-MIR5790	MICRORNA5790	MICRORNA5790, osa-miRNA5790	_		11	miRBASE accession: MI0019802.	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19765	MIR531C	miR531c, osa-miR531c, osa-MIR531c	MICRORNA531C	MICRORNA531c, osa-miRNA531c	_		11	miRBASE accession: MI0026010.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex		
19766	MIR2907B	miR2907b, osa-miR2907b, osa-MIR2907b	MICRORNA2907B	MICRORNA2907b, osa-miRNA2907b	_		11	miRBASE accession: MI0013248.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19767	MIR2907C	miR2907c, osa-miR2907c, osa-MIR2907c	MICRORNA2907C	MICRORNA2907c, osa-miRNA2907c	_		11	miRBASE accession: MI0013249.	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19768	MIR2907D	miR2907d, osa-miR2907d, osa-MIR2907d	MICRORNA2907D	MICRORNA2907d, osa-miRNA2907d	_		12	miRBASE accession: MI0013250.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19769	MIR5079B	miR5079b, osa-miR5079b, osa-MIR5079b	MICRORNA5079B	MICRORNA5079b, osa-miRNA5079b	_		10	miRBASE accession: MI0026007.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19770	MIR1440B	miR1440b, osa-miR1440b, osa-MIR1440b	MICRORNA1440B	MICRORNA1440b, osa-miRNA1440b	_		9	miRBASE accession: MI0021593.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19771	MIR2918	miR2918, osa-miR2918, osa-MIR2918	MICRORNA2918	MICRORNA2918, osa-miRNA2918	_		6	miRBASE accession: MI0013260.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
19772	MIR2919	miR2919, osa-miR2919, osa-MIR2919	MICRORNA2919	MICRORNA2919, osa-miRNA2919	_		5	miRBASE accession: MI0013261. the predicted target genes: Os01g0958500, Os01g0835500.	 Tolerance and resistance - Stress tolerance,  Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0009414 - response to water deprivation, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA	TO:0000276 - drought tolerance	
19773	MIR2920	miR2920, osa-miR2920, osa-MIR2920	MICRORNA2920	MICRORNA2920, osa-miRNA2920	_		7	miRBASE accession: MI0013262.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19774	MIR2921	miR2921, osa-miR2921, osa-MIR2921	MICRORNA2921	MICRORNA2921, osa-miRNA2921	_		11	miRBASE accession: MI0013263.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19775	MIR2922	miR2922, osa-miR2922, osa-MIR2922	MICRORNA2922	MICRORNA2922, osa-miRNA2922	_		10	miRBASE accession: MI0013264.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19776	MIR2923	miR2923, osa-miR2923, osa-MIR2923	MICRORNA2923	MICRORNA2923, osa-miRNA2923	_		11	miRBASE accession: MI0013265.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19777	MIR2924	miR2924, osa-miR2924, osa-MIR2924	MICRORNA2924	MICRORNA2924, osa-miRNA2924	_		1	miRBASE accession: MI0013266.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19778	MIR2925	miR2925, osa-miR2925, osa-MIR2925	MICRORNA2925	MICRORNA2925, osa-miRNA2925	_		1	miRBASE accession: MI0013267. predicted targets: Multiple OsDUF506s.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19779	MIR2926	miR2926, osa-miR2926, osa-MIR2926	MICRORNA2926	MICRORNA2926, osa-miRNA2926	_		6	miRBASE accession: MI0013268.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19780	MIR2927	miR2927, osa-miR2927, osa-MIR2927	MICRORNA2927	MICRORNA2927, osa-miRNA2927	_		1	miRBASE accession: MI0013269. predicted targets: Multiple OsDUF506s.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19781	MIR2928	miR2928, osa-miR2928, osa-MIR2928	MICRORNA2928	MICRORNA2928, osa-miRNA2928	_		2	miRBASE accession: MI0013270.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage		
19782	MIR2929	miR2929, osa-miR2929, osa-MIR2929	MICRORNA2929	MICRORNA2929, osa-miRNA2929	_		10	miRBASE accession: MI0013271.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA		
19783	MIR2930	miR2930, osa-miR2930, osa-MIR2930	MICRORNA2930	MICRORNA2930, osa-miRNA2930	_		6	miRBASE accession: MI0013272.	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19784	MIR2931	miR2931, osa-miR2931, osa-MIR2931	MICRORNA2931	MICRORNA2931, osa-miRNA2931	_		6	miRBASE accession: MI0013273.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19785	MIR2932	miR2932, osa-miR2932, osa-MIR2932	MICRORNA2932	MICRORNA2932, osa-miRNA2932	_		10	miRBASE accession: MI0013274.	 Other						GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19786	MIR5337B	miR5337b, osa-miR5337b, osa-MIR5337b	MICRORNA5337B	MICRORNA5337b, osa-miRNA5337b	_		3	miRBASE accession: MI0021597.	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19787	MIR5512B	miR5512b, osa-miR5512b, osa-MIR5512b	MICRORNA5512B	MICRORNA5512b, osa-miRNA5512b	_		4	miRBASE accession: MI0021599.	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19788	MIR6245	miR6245, osa-miR6245, osa-MIR6245	MICRORNA6245	MICRORNA6245, osa-miRNA6245	_		2	miRBASE accession: MI0021592. target: OsCsIF9 (Os07g0551600).	 Vegetative organ - Culm,  Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex	TO:0000051 - stem strength	
19789	MIR6246	miR6246, osa-miR6246, osa-MIR6246	MICRORNA6246	MICRORNA6246, osa-miRNA6246	_		3	miRBASE accession: MI0021594.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex		
19790	MIR6247	miR6247, osa-miR6247, osa-MIR6247	MICRORNA6247	MICRORNA6247, osa-miRNA6247	_		7	miRBASE accession: MI0021595.	 Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19791	MIR6248	miR6248, osa-miR6248, osa-MIR6248	MICRORNA6248	MICRORNA6248, osa-miRNA6248	_		3	miRBASE accession: MI0021596. predicted target: OsDDP10 (Os12g0633600).	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19792	MIR6249A	miR6249a, osa-miR6249a, osa-MIR6249a	MICRORNA6249A	MICRORNA6249a, osa-miRNA6249a	_		3	miRBASE accession: MI0021598. target gene: Os08g0140500 (OsTDC5). GO:1905627: regulation of serotonin biosynthetic process.	 Other,  Tolerance and resistance - Stress tolerance						GO:0035068 - micro-ribonucleoprotein complex, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009416 - response to light stimulus, GO:0030187 - melatonin biosynthetic process, GO:0042427 - serotonin biosynthetic process, GO:0035195 - gene silencing by miRNA, GO:0009408 - response to heat, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000075 - light sensitivity, TO:0000259 - heat tolerance	
19793	MIR6250	miR6250, osa-miR6250, osa-MIR6250	MICRORNA6250	MICRORNA6250, osa-miRNA6250	_		6	miRBASE accession: MI0021600. 	 Other						GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex		
19794	MIR6251	miR6251, osa-miR6251, osa-MIR6251	MICRORNA6251	MICRORNA6251, osa-miRNA6251	_		9	miRBASE accession: MI0021601. 	 Other						GO:0035195 - gene silencing by miRNA, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex		
19795	MIR6252	miR6252, osa-miR6252, osa-MIR6252	MICRORNA6252	MICRORNA6252, osa-miRNA6252	_		12	miRBASE accession: MI0021602. 	 Other						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA		
19796	MIR6253	miR6253, osa-miR6253, osa-MIR6253	MICRORNA6253	MICRORNA6253, osa-miRNA6253	_		7	miRBASE accession: MI0021603. 	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex		
19797	MIR6254	miR6254, osa-miR6254, osa-MIR6254	MICRORNA6254	MICRORNA6254, osa-miRNA6254	_		12	miRBASE accession: MI0021604. 	 Other						GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage		
19798	MIR6255	miR6255, osa-miR6255, osa-MIR6255	MICRORNA6255	MICRORNA6255, osa-miRNA6255	_		7	miRBASE accession: MI0021605. 	 Other						GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex		
19799	MIR6256	miR6256, osa-miR6256, osa-MIR6256	MICRORNA6256	MICRORNA6256, osa-miRNA6256	_		3	miRBASE accession: MI0021606. 	 Other						GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage		
19800	SCM1		STRONG CULM1	STRONG CULM 1			1		 Vegetative organ - Culm							TO:0000339 - stem thickness, TO:0000051 - stem strength	
19801	HRD3	OsHrd3, Hrd3	_	a homologue of yeast Hrd3/mammalian SEL1L			3	LOC_Os03g15350. an ER-resident type I membrane protein. Q10NT7. GO:0036503: ERAD pathway.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Endosperm	Os03g0259300	LOC_Os03g15350.1				GO:0042735 - protein body, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0005783 - endoplasmic reticulum, GO:0000209 - protein polyubiquitination, GO:0030968 - endoplasmic reticulum unfolded protein response		PO:0009089 - endosperm 
19802	MAL	HRD1, OsHrd1, Hrd1, OsMAL, OsRING9, RING9	MERISTEM ACTIVITYLESS	a homologue of yeast Hrd1, RING-type E3 ubiquitin ligase 9			6	Q5Z880. GO:0036503: ERAD pathway. GO:2000377: regulation of reactive oxygen species metabolic process.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0301000	LOC_Os06g19680.1, LOC_Os06g19680.2				GO:0016567 - protein ubiquitination, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane, GO:0016874 - ligase activity, GO:0008270 - zinc ion binding, GO:0080036 - regulation of cytokinin mediated signaling, GO:0051781 - positive regulation of cell division, GO:0048509 - regulation of meristem development, GO:0048364 - root development	TO:0000656 - root development trait, TO:0002692 - root meristem development, TO:0002685 - crown root number	PO:0007520 - root development stage 
19803	OS9	OsOS-9, OS-9	HOMOLOGUE OF YEAST YOS-9P	a homologue of yeast Yos-9p	HOMOLOGUES OF YEAST YOS-9P		6	Q67WM9.		Os06g0644800	LOC_Os06g43710.1				GO:0030433 - ER-associated protein catabolic process, GO:0009651 - response to salt stress, GO:0030246 - carbohydrate binding, GO:0009644 - response to high light intensity, GO:0009408 - response to heat, GO:0034976 - response to endoplasmic reticulum stress, GO:0030244 - cellulose biosynthetic process, GO:0006457 - protein folding, GO:0005783 - endoplasmic reticulum, GO:0042542 - response to hydrogen peroxide, GO:0048193 - Golgi vesicle transport		
19805	PRO13A.5	pro13a.5, OsPRO13A.5	13 KDA PROLAMIN A.5	13 kDa prolamin A.5	13 KDA PROLAMIN A.5		12		 Seed - Physiological traits - Storage substances	Os12g0269600	LOC_Os12g17010.1				GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum, GO:0045735 - nutrient reservoir activity		PO:0009089 - endosperm 
19807	PRO13B.4	pro13b.4, OsPRO13B.4	13 KDA PROLAMIN B.4	13 kDa prolamin B.4	13 KDA PROLAMIN B.4		7		 Seed - Physiological traits - Storage substances	Os07g0220000 					GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
19808	PRO13B.6	pro13b.6, OsPRO13B.6, Prol-07	13 KDA PROLAMIN B.6	13 kDa prolamin B.6	13 KDA PROLAMIN B.6		5	LOC_Os05g26250, Os05g0328466 (Saito et al. 2012). Q0DJ45. EF122440, Os05g0329100, LOC_Os05g26400 (Yoon et al. 2012).	 Seed - Physiological traits - Storage substances	Os05g0328466 	LOC_Os05g26400.1, LOC_Os05g26359.1, LOC_Os05g26250.1				GO:0033095 - aleurone grain, GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body, GO:0045735 - nutrient reservoir activity, GO:0005773 - vacuole		PO:0009089 - endosperm 
19809	PRO13B.7	pro13b.7, OsPRO13B.7	13 KDA PROLAMIN B.7	13 kDa prolamin B.7	13 KDA PROLAMIN B.7		5	LOC_Os05g26250, Os05g0328632 (Saito et al. 2012).	 Character as QTL - Grain quality,  Seed - Physiological traits - Longevity,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os05g0328632 	LOC_Os05g26250.1, LOC_Os05g26359.1, LOC_Os05g26400.1				GO:0009270 - response to humidity, GO:0009408 - response to heat, GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body	TO:0000250 - vigor related trait, TO:0000441 - humidity related trait, TO:0000435 - seed longevity, TO:0000259 - heat tolerance, TO:0010001 - percent germination, TO:0000345 - seed viability	PO:0009089 - endosperm 
19810	PRO13B.12	pro13b.12, OsPRO13B.12	13 KDA PROLAMIN B.12	13 kDa prolamin B.12	13 KDA PROLAMIN B.12		5	Os05g0329300/LOC_Os05g26386 in Saito et al. 2012. Q0DJ45.	 Seed - Physiological traits - Storage substances	Os05g0329300					GO:0005773 - vacuole, GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum, GO:0033095 - aleurone grain, GO:0045735 - nutrient reservoir activity		PO:0009089 - endosperm 
19811	PRO13B.13	pro13b.13, OsPRO13b.13	13 KDA PROLAMIN B.13	13 kDa prolamin b.13	13 KDA PROLAMIN B.13		5	Os05g0329350/LOC_Os05g26400 in Saito et al. 2012. Q0DJ45.	 Seed - Physiological traits - Storage substances	Os05g0329350 					GO:0042735 - protein body, GO:0005783 - endoplasmic reticulum, GO:0033095 - aleurone grain, GO:0045735 - nutrient reservoir activity, GO:0005773 - vacuole		PO:0009089 - endosperm 
19812	PRO13B.15	pro13b.15, OsPRO13B.15, PROLM11	13 KDA PROLAMIN B.15	Prolamin 11, 13 kDa prolamin B.15	13 KDA PROLAMIN B.15		5	PROLM11 in Yang et al. 2018.	 Seed - Physiological traits - Storage substances	Os05g0329700 	LOC_Os05g26460.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
19813	PRO13B.20	pro13b.20, OsPRO13B.20	13 KDA PROLAMIN B.20	13 kDa prolamin B.20	13 KDA PROLAMIN B.20		5		 Seed - Physiological traits - Storage substances	Os05g0331532	LOC_Os05g26720.1				GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
19814	_	Os_CLE48, OsCLE48, CLE48	_	CLAVATA3/ENDOSPERM SURROUNDING REGION 48, CLV3/ESR-related 48, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 48			5	LOC_Os05g48730. GO:1902183: regulation of shoot apical meristem development.	 Vegetative organ - Shoot apical meristem(SAM)	Os05g0561300	LOC_Os05g48730.1				GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0006020 - shoot apical meristem development	PO:0020148 - shoot apical meristem 
19815	_	Os_CLE15, OsCLE15, CLE15	_	CLV3/ESR-related 15, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 15													
19816	_	Os_CLE24, OsCLE24, CLE24	_	CLV3/ESR-related 24, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 24													
19817	_	Os_CLE51, OsCLE51, CLE51	_	CLV3/ESR-related 51, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 51													
19818	_	Os_CLE46, OsCLE46, CLE46	_	CLV3/ESR-related 46, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 46													
19819	_	Os_CLE44, OsCLE44, CLE44	_	CLV3/ESR-related 44, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 44													
19820	_	Os_CLE49, OsCLE49, CLE49	_	CLV3/ESR-related 49, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 49													
19821	_	Os_CLE45, OsCLE45, CLE45	_	CLV3/ESR-related 45, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 45													
19822	_	Os_CLE43, OsCLE43, CLE43	_	CLV3/ESR-related 43, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 43													
19823	_	Os_CLE42, OsCLE42, CLE42	_	CLV3/ESR-related 42, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 42													
19824	_	Os_CLE47, OsCLE47, CLE47	_	CLV3/ESR-related 47, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 47													
19825	_	Os_CLE50, OsCLE50, CLE50	_	CLV3/ESR-related 50, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 50													
19826	_	Os_CLE71, OsCLE71, CLE71	_	CLV3/ESR-related 71, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 71													
19827	_	OsMYBc, MYBc	_	MYB coiled-coil type transcription factor		osmybc	9	LOC_Os09g12770.	 Tolerance and resistance - Stress tolerance,  Other	Os09g0299200	LOC_Os09g12770.1, LOC_Os09g12770.2				GO:0003677 - DNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
19828	HAM2	OsHAM2, OsGRAS-8, OsGRAS8, GRAS-8, GRAS8	HAIRY MERISTEM 2	hairy meristem 2, GRAS protein 8	GRAS PROTEIN 8		2	GRAS (GAI-RGA-SCR) plant-specific transcription factor. 	 Other,  Reproductive organ - Heading date	Os02g0663100	LOC_Os02g44370.1				GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent	TO:0006020 - shoot apical meristem development, TO:0002616 - flowering time, TO:0006021 - vegetative to reproductive phase transition trait, TO:0000137 - days to heading	PO:0020148 - shoot apical meristem 
19829	HAM3	OsHAM3, OsGRAS-21, OsGRAS21, GRAS-21, GRAS21, OsGRAS20, GRAS20	HAIRY MERISTEM 3	hairy meristem 3, GRAS protein 21	GRAS PROTEIN 21		4	GRAS (GAI-RGA-SCR) plant-specific transcription factor. OsGRAS20 in Dutta et al. 2021.	 Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Other	Os04g0555000	LOC_Os04g46860.1				GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0006351 - transcription, DNA-dependent, GO:0009737 - response to abscisic acid stimulus	TO:0002616 - flowering time, TO:0006021 - vegetative to reproductive phase transition trait, TO:0006020 - shoot apical meristem development, TO:0000137 - days to heading, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity	PO:0020148 - shoot apical meristem 
19830	HAM4	OsHAM4	HAIRY MERISTEM 4	hairy meristem 4			6	GRAS (GAI-RGA-SCR) plant-specific transcription factor. Os06g0105200 (in Rap1 (build3), Rap3 (build5)).	 Other,  Reproductive organ - Heading date						GO:0048510 - regulation of timing of transition from vegetative to reproductive phase	TO:0002616 - flowering time, TO:0006021 - vegetative to reproductive phase transition trait, TO:0006020 - shoot apical meristem development, TO:0000137 - days to heading	PO:0020148 - shoot apical meristem 
19832	PSD128	OsCDC48, CDC48, OsCDC48-1, CDC48-1	PREMATURE SENESCENCE AND DEATH 128	cell division cycle 48, premature senescence and death 128	CELL DIVISION CONTROL 48	psd128, HM128	3	KP718614, KP718613. GO:0090398: cellular senescence. OsCDC48-1 in Qian et al. 2018. GO:0036503: ERAD pathway. GO:2000377: regulation of reactive oxygen species metabolic process.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os03g0151800 	LOC_Os03g05730.1				GO:0010150 - leaf senescence, GO:0051301 - cell division, GO:0005634 - nucleus, GO:0016787 - hydrolase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding	TO:0000396 - grain yield, TO:0000249 - leaf senescence, TO:0002715 - chloroplast development trait, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000325 - soluble protein content, TO:0000346 - tiller number	
19833	CDC48E	OsCDC48E, OsCDC48-2, CDC48-2	CELL DIVISION CONTROL 48E	cell division cycle 48E	CELL DIVISION CONTROL 48E		10	MK292711. one of the two isoforms of CDC48. OsCDC48-2 in Qian et al. 2018, She et al. 2024. GO:0036503: ERAD pathway.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os10g0442600	LOC_Os10g30580.2, LOC_Os10g30580.1				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0009651 - response to salt stress	TO:0000249 - leaf senescence, TO:0006001 - salt tolerance	
19834	GRAS23	OsGRAS23, OsGRAS-23, GRAS-23, OsGRAS22, GRAS22	GRAS PROTEIN 23	GRAS transcription factor 23, GRAS protein 23	GRAS PROTEIN 23		4	OsGRAS22 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0590400 	LOC_Os04g50060.2, LOC_Os04g50060.1				GO:0042742 - defense response to bacterium, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0006979 - response to oxidative stress, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
19835	_	OsHIGD2, HIGD2	_	hypoxia induced protein, Hypoxia-Induced Gene Domain 2, Hypoxia-Induced Gene Domain Protein 2			7	LOC_Os07g47670. GO:0097249: mitochondrial respiratory chain super complex.	 Tolerance and resistance - Stress tolerance	Os07g0673900 	LOC_Os07g47670.1, LOC_Os07g47670.2				GO:0033617 - mitochondrial respiratory chain complex IV assembly, GO:0031305 - integral to mitochondrial inner membrane, GO:0005739 - mitochondrion, GO:0009723 - response to ethylene stimulus, GO:0030912 - response to deep water, GO:0016021 - integral to membrane, GO:0001666 - response to hypoxia	TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity, TO:0000173 - ethylene sensitivity	PO:0020037 - mesocotyl , PO:0009005 - root , PO:0009010 - seed , PO:0025034 - leaf 
19836	2ODD8	2-ODD8, Os2-ODD8, Os2ODD8, OsLDOX2, LDOX2	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 8	leucoanthocyanidin dioxygenase, 2-oxoglutarate-dependent dioxygenase 8, leucoanthocyanidin dioxygenase 2	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 8		3		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os03g0289800	LOC_Os03g18030.2, LOC_Os03g18030.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, GO:0009753 - response to jasmonic acid stimulus, GO:0006979 - response to oxidative stress, GO:0009737 - response to abscisic acid stimulus, GO:0005506 - iron ion binding, GO:0006952 - defense response	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait, TO:0000179 - biotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	PO:0009006 - shoot system 
19837	1CYSPRXB	Os1-Cys Prx B, 1-Cys Prx B, Os1-CysPrxB, 1-CysPrxB	1-CYS PEROXIREDOXIN B	peroxiredoxin, 1 Cys-peroxiredoxin B	1-CYS PEROXIREDOXIN B		7	LOC_Os07g44440. ROS scavenging enzyme. P0C5D1. P0C5D0.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character,  Tolerance and resistance	Os07g0638400 	LOC_Os07g44440.1				GO:0004601 - peroxidase activity, GO:0051920 - peroxiredoxin activity, GO:0048364 - root development, GO:0006979 - response to oxidative stress, GO:0006952 - defense response, GO:0005634 - nucleus	TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0009005 - root 
19838	_		_				12	proteinase inhibitor. LOC_Os12g36220. Os12g0548650 (in Ncbi and UniProt). 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os12g0548501	LOC_Os12g36220.1				GO:0006952 - defense response, GO:0006979 - response to oxidative stress, GO:0009611 - response to wounding, GO:0004867 - serine-type endopeptidase inhibitor activity	TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait	
19839	_	OsRD29A, RD29A	_						 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
19840	_	OsHUB1, HUB1, SIP20, OsRING377, RING377	_	HISTONE MONOUBIQUITINATION1, HISTONE MONOUBIQUITINATION 1, SKIP interacting protein 20, SKIPa-interacting protein 20, SKIPa-interacting protein 20, RING-type E3 ubiquitin ligase 377		oshub1, oshub1-1, oshub1-2	4	the homolog of Arabidopsis (Arabidopsis thaliana) HUB1 protein. LOC_Os04g46450. Q7XU27. EU368710.  Ubiquitin-ligase complex protein. 	 Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility	Os04g0550400 	LOC_Os04g46450.1				GO:0016874 - ligase activity, GO:0009555 - pollen development, GO:0010228 - vegetative to reproductive phase transition, GO:0010090 - trichome morphogenesis, GO:0010182 - sugar mediated signaling, GO:0007062 - sister chromatid cohesion, GO:0009845 - seed germination, GO:0010162 - seed dormancy, GO:0006396 - RNA processing, GO:0050826 - response to freezing, GO:0010389 - regulation of G2/M transition of mitotic cell cycle, GO:0009909 - regulation of flower development, GO:0003002 - regionalization, GO:0016579 - protein deubiquitination, GO:0016926 - protein desumoylation, GO:0010072 - primary shoot apical meristem specification, GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding, GO:0045010 - actin nucleation, GO:0007155 - cell adhesion, GO:0051301 - cell division, GO:0016049 - cell growth, GO:0048825 - cotyledon development, GO:0010388 - cullin deneddylation, GO:0009817 - defense response to fungus, incompatible interaction, GO:0048589 - developmental growth, GO:0009880 - embryonic pattern specification, GO:0048449 - floral organ formation, GO:0005739 - mitochondrion, GO:0010413 - glucuronoxylan metabolic process, GO:0048573 - photoperiodism, flowering, GO:0033523 - histone H2B ubiquitination, GO:0045492 - xylan biosynthetic process, GO:0016571 - histone methylation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009640 - photomorphogenesis, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0006406 - mRNA export from nucleus, GO:0000278 - mitotic cell cycle, GO:0010074 - maintenance of meristem identity, GO:0019915 - lipid storage, GO:0009965 - leaf morphogenesis, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0009556 - microsporogenesis, GO:0048653 - anther development, GO:0010390 - histone monoubiquitination, GO:0005634 - nucleus	TO:0000180 - spikelet fertility, TO:0000207 - plant height, TO:0000137 - days to heading	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
19841	HUB2	OsHUB2, FRRP1, DLN241, OsDLN241, OsRING378, RING378	HISTONE MONOUBIQUITINATION 2	HISTONE MONOUBIQUITINATION2, Flowering-Related RING Protein 1, DLN repressor 241, DLN motif protein 241, RING-type E3 ubiquitin ligase 378		oshub2	10	the homolog of Arabidopsis (Arabidopsis thaliana) HUB2 protein. Q336R3. novel_mir112 target gene.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date,  Vegetative organ - Culm	Os10g0565600 	LOC_Os10g41590.1, LOC_Os10g41590.2				GO:0009556 - microsporogenesis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0007346 - regulation of mitotic cell cycle, GO:0048573 - photoperiodism, flowering, GO:0048653 - anther development, GO:0008270 - zinc ion binding, GO:0043687 - post-translational protein modification, GO:2000028 - regulation of photoperiodism, flowering, GO:0009555 - pollen development, GO:0010228 - vegetative to reproductive phase transition, GO:0033523 - histone H2B ubiquitination, GO:0009965 - leaf morphogenesis, GO:0010162 - seed dormancy, GO:0004842 - ubiquitin-protein ligase activity, GO:0016874 - ligase activity, GO:0010390 - histone monoubiquitination	TO:0000734 - grain length, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0000371 - yield trait, TO:0000180 - spikelet fertility, TO:0000040 - panicle length	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
19842	_	OsLSD2	_				3	LOC_Os03g43840. Q6ASS2. one of the five AtLSD1 homologs in rice genome.		Os03g0639600	LOC_Os03g43840.1				GO:0005634 - nucleus		
19843	_	OsLSD3	_				8	LOC_Os08g03610. Q84UR0. one of the five AtLSD1 homologs in rice genome.		Os08g0130100 	LOC_Os08g03610.1				GO:0005634 - nucleus		
19844	_	OsLOL2	_				7	LOC_Os07g28910. Q69UP7. one of the five AtLSD1 homologs in rice genome.		Os07g0472200 	LOC_Os07g28910.1				GO:0005634 - nucleus		
19845	PILS1	OsPILS1	PIN LIKES 1	PIN likes 1	PIN LIKES 1		9		 Biochemical character	Os09g0491740 	LOC_Os09g31478.1, LOC_Os09g31478.2				GO:0009733 - response to auxin stimulus, GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0016021 - integral to membrane	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19846	_	OsPILS2, PILS2	_	PIN likes 2			8	LOC_Os08g09190.	 Biochemical character	Os08g0191000	LOC_Os08g09190.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19847	_	OsPILS5, PILS5	_	PIN likes 5			7	LOC_Os07g20510.		Os07g0300200  	LOC_Os07g20510.1				GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19848	_	OsPILS6a, PILS6a	_	PIN likes 6a			1	LOC_Os01g60230.	 Biochemical character	Os01g0818000	LOC_Os01g60230.1, LOC_Os01g60230.3, LOC_Os01g60230.4				GO:0009735 - response to cytokinin stimulus, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009733 - response to auxin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
19849	PILS6B	OsPILS6b, PILS6b	PIN LIKES 6B	PIN likes 6b	PIN LIKES 6B		5		 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character	Os05g0481900 	LOC_Os05g40330.1				GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus	TO:0000396 - grain yield, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000346 - tiller number	
19850	_	OsPILS7a, PILS7a, OsPINL2	_	PIN likes 7a			9	OsPINL2 in Zhang et al. 2019.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0554300 	LOC_Os09g38130.2, LOC_Os09g38130.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport, GO:0009735 - response to cytokinin stimulus, GO:0051607 - defense response to virus, GO:0009733 - response to auxin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0000163 - auxin sensitivity	
19851	_	OsPILS7b, PILS7b	_	PIN likes 7b			9	LOC_Os09g38210.	 Biochemical character	Os09g0555100 	LOC_Os09g38210.1				GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	
19852	ES1	TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1, OsSCAR2, SCAR2	EARLY SENESCENCE 1	early senescence 1, SCAR-like protein 2, suppressor of cAMP receptor 1, TUTOU1, TOTOU1	SCAR-LIKE PROTEIN 2	es1, es1-1, es1-2, tut1	1	Q5QNA6. a component of the SCAR/WAVE complex. a Suppressor of cAMP Receptor-Like Protein. a suppressor of cAMP receptor/Wiskott-Aldrich syndrome protein family verprolin-homologous (SCAR/WAVE)-like protein. OsSCAR1 in Zhang et al. 2008, Bai et al. 2015. OsSCAR2 in Rao et al. 2015. Zhang et al. 2019. GO:1990069: stomatal opening. the candidate gene for qIL1.1.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity	Os01g0208600	LOC_Os01g11040.1				GO:0010148 - transpiration, GO:0009737 - response to abscisic acid stimulus, GO:0030036 - actin cytoskeleton organization, GO:0048653 - anther development, GO:0010229 - inflorescence development, GO:0010150 - leaf senescence, GO:0005737 - cytoplasm, GO:0010118 - stomatal movement, GO:0009414 - response to water deprivation, GO:0009555 - pollen development, GO:0005856 - cytoskeleton, GO:0042742 - defense response to bacterium	TO:0000145 - internode length, TO:0000447 - filled grain number, TO:0000068 - lodging incidence, TO:0000051 - stem strength, TO:0000249 - leaf senescence, TO:0000566 - stomatal frequency, TO:0000615 - abscisic acid sensitivity, TO:0000203 - bacterial leaf streak disease resistance, TO:0000522 - stomatal conductance, TO:0000218 - pollen abortion type, TO:0000391 - seed size, TO:0000421 - pollen fertility, TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0001018 - transpiration rate	PO:0001007 - pollen development stage , PO:0001083 - inflorescence development stage , PO:0001004 - anther development stage 
19853	_	OsTMM, TMM	_	TOO MANY MOUTHS			1	LOC_Os01g43440. a Leu-rich repeat receptor-like protein.		Os01g0623000 	LOC_Os01g43440.1				GO:0002237 - response to molecule of bacterial origin, GO:0009737 - response to abscisic acid stimulus, GO:0010103 - stomatal complex morphogenesis, GO:0031225 - anchored to membrane, GO:0042127 - regulation of cell proliferation, GO:0048443 - stamen development, GO:0007165 - signal transduction, GO:0008356 - asymmetric cell division	TO:0000566 - stomatal frequency	
19854	SDD1	OsSDD1, OsSub26, SUB26	STOMATA DENSITY AND DISTRIBUTION 1	"Subtilisin 26, STOMATA DENSITY AND
DISTRIBUTION1"	SUBTILISIN 26	ossdd1, ossdd1-1, ossdd1-2	3	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml GO:0050891: multicellular organismal water homeostasis.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os03g0143100 	LOC_Os03g04950.1				GO:0006508 - proteolysis, GO:0010374 - stomatal complex development, GO:0004252 - serine-type endopeptidase activity, GO:0009414 - response to water deprivation	TO:0000566 - stomatal frequency, TO:0000276 - drought tolerance	
19855	PRXIIE2	Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2	PEROXIREDOXIN IIE2	peroxiredoxin IIE2, Type-II Prx E2, Type-II peroxiredoxin E2, Peroxiredoxin-2E-2	PEROXIREDOXIN IIE2		2	Q7F8S5.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0192700	LOC_Os02g09940.1				GO:0009570 - chloroplast stroma, GO:0051920 - peroxiredoxin activity, GO:0006979 - response to oxidative stress, GO:0045454 - cell redox homeostasis, GO:0008379 - thioredoxin peroxidase activity, GO:0005737 - cytoplasm, GO:0034599 - cellular response to oxidative stress, GO:0004601 - peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process	TO:0002657 - oxidative stress	PO:0009006 - shoot system 
19856	GUN4	OsGUN4	GENOME UNCOUPLED 4	Genome uncoupled 4, magnesium chelatase (Mg-chelatase) activating factor, magnesium chelatase accessory protein GUN4, magnesium-chelatase accessory protein GUN4		xantha, gun4	11		 Biochemical character,  Coloration - Others,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os11g0267000	LOC_Os11g16550.1				GO:0009965 - leaf morphogenesis, GO:0015979 - photosynthesis, GO:0030154 - cell differentiation, GO:0033014 - tetrapyrrole biosynthetic process, GO:0043085 - positive regulation of catalytic activity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0046906 - tetrapyrrole binding, GO:0019344 - cysteine biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process, GO:0010207 - photosystem II assembly, GO:0010019 - chloroplast-nucleus signaling pathway, GO:0006364 - rRNA processing, GO:0006098 - pentose-phosphate shunt, GO:0009073 - aromatic amino acid family biosynthetic process	TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000326 - leaf color, TO:0001015 - photosynthetic rate, TO:0000293 - chlorophyll-a content	
19857	YGL18 	ChlM, CHLM, MgMT, OsYGL18, OsChlM, OsCHLM, OsMgMT	YELLOW-GREEN LEAF 18	Mg-Proto IX methyltransferase, Mg-protoporphyrin IX methyltransferase, yellow-green leaf 18		ygl18	6		 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os06g0132400	LOC_Os06g04150.1				GO:0046777 - protein amino acid autophosphorylation, GO:0009941 - chloroplast envelope, GO:0009534 - chloroplast thylakoid, GO:0010155 - regulation of proton transport, GO:0009416 - response to light stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0046406 - magnesium protoporphyrin IX methyltransferase activity, GO:0015995 - chlorophyll biosynthetic process, GO:0006364 - rRNA processing, GO:0009507 - chloroplast, GO:0009648 - photoperiodism, GO:0009642 - response to light intensity	TO:0000326 - leaf color, TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content	PO:0025034 - leaf 
19858	BG1	OsaBG1, OsBG1	BIG GRAIN1	big grain1, big grain 1		Bg1-D	3	GO:0060918: auxin transport. PO:0000905: seed yield.	 Seed - Morphological traits,  Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os03g0175800	LOC_Os03g07920.1				GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus, GO:0009630 - gravitropism	TO:0000163 - auxin sensitivity, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0002693 - gravity response trait, TO:0000181 - seed weight	PO:0005028 - inflorescence vascular system , PO:0025205 - shoot system vascular system 
19859	LHP1	OsLHP1	LIKE HETEROCHROMATIN PROTEIN 1	LHP1 homolog	LIKE HETEROCHROMATIN PROTEIN 1	Oslhp1, Oslhp1-1, Oslhp1-2, Oslhp1-3, Oslhp1-4, Oslhp1-5, Oslhp1-6, Oslhp1-7, Oslhp1-8, Oslhp1-9, Oslhp1-10	10	Q339W7. chromatin regulator. a putative PRC1 (Polycomb Repressive Complex 1) subunit. GO:0061085: regulation of histone H3-K27 methylation.	 Reproductive organ - Heading date,  Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os10g0324900	LOC_Os10g17770.1				GO:0007346 - regulation of mitotic cell cycle, GO:0048573 - photoperiodism, flowering, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0010050 - vegetative phase change, GO:0045857 - negative regulation of molecular function, epigenetic, GO:0009910 - negative regulation of flower development, GO:0009825 - multidimensional cell growth, GO:0010016 - shoot morphogenesis, GO:0006351 - transcription, DNA-dependent, GO:0009507 - chloroplast, GO:0010048 - vernalization response, GO:0000791 - euchromatin, GO:0005720 - nuclear heterochromatin, GO:0003677 - DNA binding, GO:0003935 - GTP cyclohydrolase II activity, GO:0031048 - chromatin silencing by small RNA, GO:0051567 - histone H3-K9 methylation, GO:0006346 - methylation-dependent chromatin silencing, GO:0032350 - regulation of hormone metabolic process, GO:0021700 - developmental maturation, GO:0009755 - hormone-mediated signaling, GO:0010321 - regulation of vegetative phase change, GO:0010150 - leaf senescence, GO:0070734 - histone H3-K27 methylation, GO:0016246 - RNA interference	TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000249 - leaf senescence, TO:0000735 - plastochron, TO:0000241 - leaf number, TO:0000370 - leaf width, TO:0000135 - leaf length, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000357 - growth and development trait, TO:0000476 - growth hormone content	PO:0001054 - 4 leaf senescence stage 
19860	YCHF1	OsYchF1, YchF1, OsPM8ATP	YCHF DOMAIN-CONTAINING PROTEIN 1	YchF domain-containing protein 1	YCHF DOMAIN-CONTAINING PROTEIN 1		8	G-protein. Q6Z1J6. OsYchF1 crystal structures in the absence or presence of AMPPNP and GMPPNP (PDB code: 5EE0, 5EE3 and 5EE9). GO:1901001: negative regulation of response to salt stress. a homolog of Hemophilus influenzae YchF protein. a PM-type Ca2+-ATPase. P-loop NTPase. an unconventional G protein. TO:0006060: leaf chlorosis. GO:0072593: reactive oxygen species metabolic process. GO:1900425: negative regulation of defense response to bacterium. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0199300	LOC_Os08g09940.1				GO:0005829 - cytosol, GO:0009506 - plasmodesma, GO:0009651 - response to salt stress, GO:0016887 - ATPase activity, GO:0043023 - ribosomal large subunit binding, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0006096 - glycolysis, GO:0006094 - gluconeogenesis, GO:0003924 - GTPase activity, GO:0005524 - ATP binding, GO:0005525 - GTP binding, GO:0005886 - plasma membrane, GO:0006623 - protein targeting to vacuole, GO:0043022 - ribosome binding, GO:0001906 - cell killing, GO:0042742 - defense response to bacterium	TO:0000315 - bacterial disease resistance, TO:0000074 - blast disease, TO:0000495 - chlorophyll content, TO:0000652 - leaf necrosis, TO:0006001 - salt tolerance	
19861	MATL	OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MTL, OsMTL	MATRILINEAL	Patatin-related phospholipase A II beta, PHOSPHOLIPASE A1, NOT LIKE DAD	PATATIN-RELATED PHOSPHOLIPASE A II BETA	Osmatl	3	Q84QY3. a rice orthologue of ZmMATL. PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0393900 	LOC_Os03g27610.1				GO:0019954 - asexual reproduction, GO:0006952 - defense response, GO:0047372 - acylglycerol lipase activity, GO:0004620 - phospholipase activity, GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity, GO:0009566 - fertilization	TO:0000455 - seed set percent, TO:0000437 - male sterility, TO:0000180 - spikelet fertility	PO:0025281 - pollen , PO:0009049 - inflorescence 
19862	_	OspPLAIIgamma, pPLAIIgamma	_	Patatin-related phospholipase A II gamma			8	LOC_Os08g28880.	 Biochemical character	Os08g0376500	LOC_Os08g28880.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19863	_	OspPLAIIdelta, pPLAIIdelta	_	Patatin-related phospholipase A II delta			8	LOC_Os08g37180.	 Biochemical character	Os08g0476900 	LOC_Os08g37180.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process		
19864	_	OspPLAIIepsilon, pPLAIIepsilon	_	Patatin-related phospholipase A II epsilon			8	LOC_Os08g37210.	 Biochemical character	Os08g0477100 	LOC_Os08g37210.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19865	_	OspPLAIIzeta, pPLAIIzeta	_	Patatin-related phospholipase A II zeta			8	LOC_Os08g37250. Q6ZJD3.	 Biochemical character	Os08g0477500 	LOC_Os08g37250.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process, GO:0006952 - defense response		
19866	MATL2	OspPLAIIeta, pPLAIIeta, MATL2	MATRILINEAL 2	Patatin-related phospholipase A II eta	PATATIN-RELATED PHOSPHOLIPASE A II ETA	Osmatl2	9		 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Character as QTL - Plant growth activity	Os09g0462400 	LOC_Os09g28770.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process, GO:0005886 - plasma membrane, GO:0009555 - pollen development	TO:0000455 - seed set percent, TO:0000218 - pollen abortion type, TO:0000207 - plant height, TO:0000357 - growth and development trait	PO:0025281 - pollen , PO:0001007 - pollen development stage 
19867	PPLAIITHETA	OspPLAIItheta, pPLAIItheta	PATATIN-RELATED PHOSPHOLIPASE A II THETA	Patatin-related phospholipase A II theta	PATATIN-RELATED PHOSPHOLIPASE A II THETA		11		 Biochemical character	Os11g0614400 	LOC_Os11g39990.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process		
19868	_	OspPLAIIiota, pPLAIIiota	_	Patatin-related phospholipase A II iota			11	LOC_Os11g40009.	 Biochemical character	Os11g0614500	LOC_Os11g40009.1, LOC_Os11g40009.2				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19869	_	OspPLAIIkappa, pPLAIIkappa	_	Patatin-related phospholipase A II kappa			12	LOC_Os12g36530.	 Biochemical character	Os12g0551600 	LOC_Os12g36530.1				GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process		
19870	_	OspPLAIIlambda, pPLAIIlambda	_	Patatin-related phospholipase A II lambda			12	LOC_Os12g36610.	 Biochemical character	Os12g0552200 	LOC_Os12g36610.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19871	_	OspPLAI, pPLAI	_	Patatin-related phospholipase A I			7	LOC_Os07g33670.	 Biochemical character	Os07g0520900 	LOC_Os07g33670.1				GO:0016926 - protein desumoylation, GO:0016042 - lipid catabolic process, GO:0047714 - galactolipase activity, GO:0004620 - phospholipase activity, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0010228 - vegetative to reproductive phase transition, GO:0009620 - response to fungus, GO:0009695 - jasmonic acid biosynthetic process		
19872	_	OspPLAIIIalpha, pPLAIIIalpha	_	Patatin-related phospholipase A III alpha		OspplaIIIalpha-1	3	LOC_Os03g14950. GO:2000024: regulation of leaf development.  the essential genes responsible for creating the gamma-rl mutant (rolled-leaf mutant on chromosome 3) phenotypes.	 Biochemical character,  Seed - Morphological traits,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os03g0254400 	LOC_Os03g14950.1				GO:0009739 - response to gibberellin stimulus, GO:0008112 - nicotinamide N-methyltransferase activity, GO:0080113 - regulation of seed growth, GO:0080112 - seed growth, GO:0048366 - leaf development, GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity, GO:0030244 - cellulose biosynthetic process	TO:0000207 - plant height, TO:0000653 - seed development trait, TO:0000655 - leaf development trait, TO:0000166 - gibberellic acid sensitivity, TO:0000135 - leaf length, TO:0000040 - panicle length, TO:0000146 - seed length, TO:0000576 - stem length, TO:0000227 - root length	PO:0007030 - seedling shoot emergence stage 
19873	_	OspPLAIIIbeta, pPLAIIIbeta	_	Patatin-related phospholipase A III beta			3	LOC_Os03g43880.	 Biochemical character	Os03g0640000 	LOC_Os03g43880.1				GO:0016042 - lipid catabolic process, GO:0016787 - hydrolase activity		
19874	_	OspPLAIIIgamma, pPLAIIIgamma	_	Patatin-related phospholipase A III gamma			3	LOC_Os03g57080.	 Biochemical character	Os03g0784100 	LOC_Os03g57080.1				GO:0016787 - hydrolase activity		
19875	_	OspPLAIIIepsilon, pPLAIIIepsilon	_	Patatin-related phospholipase A III epsilon			7	LOC_Os07g05110. Q8H5D4.	 Biochemical character	Os07g0144500 	LOC_Os07g05110.1				GO:0016042 - lipid catabolic process, GO:0006952 - defense response, GO:0016787 - hydrolase activity		
19876	_	OspPLAIIIzeta, pPLAIIIzeta	_	Patatin-related phospholipase A III zeta			12	LOC_Os12g41720.	 Biochemical character	Os12g0611300	LOC_Os12g41720.1				GO:0008152 - metabolic process		
19877	_	OspPLAIValpha, pPLAIValpha	_	Patatin-related phospholipase A IV alpha			1	LOC_Os01g55650.	 Biochemical character	Os01g0762000 	LOC_Os01g55650.1				GO:0006629 - lipid metabolic process, GO:0004806 - triacylglycerol lipase activity		
19878	_	OspPLAIVbeta, pPLAIVbeta	_	Patatin-related phospholipase A IV beta			3	LOC_Os03g59620.	 Biochemical character	Os03g0810900 	LOC_Os03g59620.1				GO:0006629 - lipid metabolic process, GO:0004806 - triacylglycerol lipase activity		
19879	_	OspPLAV, pPLAV	_	Patatin-related phospholipase A V			11	LOC_Os11g34370.	 Biochemical character	Os11g0546300 	LOC_Os11g34370.1				GO:0016787 - hydrolase activity, GO:0006629 - lipid metabolic process		
19881	TOR	OsTOR	TARGET OF RAPAMYCIN	target of rapamycin, TARGET OF RAPAMYCIN	TARGET OF RAPAMYCIN		5	AB982929. Q0DJS1. GO:0000975: regulatory region DNA binding. GO:0071555: cytokinesis by cell plate formation. GO:2000234: positive regulation of rRNA processing. GO:1901367:  response to L-cysteine. GO:1901355: response to rapamycin. In the major grain size/weight QTL within the LDR of Chromosome 5, TOR gene seems to be the main candidate gene (Kumar et al. 2020).	 Tolerance and resistance - Stress tolerance	Os05g0235300					GO:0040019 - positive regulation of embryonic development, GO:0009887 - organ morphogenesis, GO:0010072 - primary shoot apical meristem specification, GO:0010090 - trichome morphogenesis, GO:0010228 - vegetative to reproductive phase transition, GO:0045010 - actin nucleation, GO:0045132 - meiotic chromosome segregation, GO:0009409 - response to cold, GO:0031931 - TORC1 complex, GO:0080052 - response to histidine, GO:0010238 - response to proline, GO:0043201 - response to leucine, GO:0009737 - response to abscisic acid stimulus, GO:0043200 - response to amino acid stimulus, GO:0048765 - root hair cell differentiation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0045595 - regulation of cell differentiation, GO:0007155 - cell adhesion, GO:0009303 - rRNA transcription, GO:0009407 - toxin catabolic process, GO:0009880 - embryonic pattern specification, GO:0010431 - seed maturation, GO:0010507 - negative regulation of autophagy, GO:0016303 - 1-phosphatidylinositol-3-kinase activity, GO:0030307 - positive regulation of cell growth, GO:0033044 - regulation of chromosome organization, GO:0042138 - meiotic DNA double-strand break formation, GO:0005524 - ATP binding, GO:0008144 - drug binding, GO:0016301 - kinase activity, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0007131 - reciprocal meiotic recombination, GO:0007062 - sister chromatid cohesion, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	
19882	_		_	OsRaptor 1, Raptor 1, Regulatory associated protein of TOR 1			11	LOC_Os11g01872. C7J8E5. GO:0071230: cellular response to amino acid stimulus.		Os11g0109933 	LOC_Os11g01872.1				GO:0071902 - positive regulation of protein serine/threonine kinase activity, GO:0005737 - cytoplasm, GO:0008361 - regulation of cell size, GO:0009267 - cellular response to starvation, GO:0010506 - regulation of autophagy, GO:0030307 - positive regulation of cell growth, GO:0030674 - protein binding, bridging, GO:0031929 - TOR signaling pathway, GO:0031931 - TORC1 complex		
19883	RAPTOR2 	OsRaptor 2, Raptor 2	REGULATORY ASSOCIATED PROTEIN OF TOR 2	Regulatory associated protein of TOR 2	REGULATORY ASSOCIATED PROTEIN OF TOR 2		12	Q0IQN5. AY491431. GO:0071230: cellular response to amino acid stimulus.		Os12g0110000	LOC_Os12g01922.1				GO:0009267 - cellular response to starvation, GO:0008361 - regulation of cell size, GO:0010506 - regulation of autophagy, GO:0071902 - positive regulation of protein serine/threonine kinase activity, GO:0005737 - cytoplasm, GO:0031931 - TORC1 complex, GO:0031929 - TOR signaling pathway, GO:0030674 - protein binding, bridging, GO:0030307 - positive regulation of cell growth		
19884	_	CaMBP	_	Calmodulin-Binding Protein			12		 Tolerance and resistance - Stress tolerance	Os12g0547600	LOC_Os12g36110.1				GO:0030912 - response to deep water, GO:0006950 - response to stress	TO:0000524 - submergence tolerance	
19885	_	OsCYL1, CYL1	_	cyclase-like 1			2	LOC_Os02g09420. AK287460.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0187100 	LOC_Os02g09420.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009723 - response to ethylene stimulus, GO:0004061 - arylformamidase activity, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009735 - response to cytokinin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0019441 - tryptophan catabolic process to kynurenine	TO:0000276 - drought tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
19886	_	OsCYL2, CYL2	_	cyclase-like 2			6	LOC_Os06g43180.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0638700 	LOC_Os06g43180.1				GO:0009723 - response to ethylene stimulus, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0004061 - arylformamidase activity, GO:0009733 - response to auxin stimulus, GO:0019441 - tryptophan catabolic process to kynurenine, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0006001 - salt tolerance	
19887	_	OsCYL3, CYL3	_	cyclase-like 3			8	LOC_Os08g23100.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0319900 	LOC_Os08g23100.1, LOC_Os08g23100.2				GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0019441 - tryptophan catabolic process to kynurenine, GO:0009737 - response to abscisic acid stimulus, GO:0004061 - arylformamidase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance	
19888	CYL4	OsCYL4, OsCYL4a, OsCYL4b	CYCLASE-LIKE 4	cyclase-like 4	CYCLASE-LIKE 4		9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0110300 	LOC_Os09g02270.1, LOC_Os09g02270.2				GO:0009741 - response to brassinosteroid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0004061 - arylformamidase activity, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0019441 - tryptophan catabolic process to kynurenine	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity	
19889	AQR	OsAQR, OsDNA2_2, DNA2_2	AQUARIUS	intron-binding protein AQUARIUS, DNA Replication Helicase/Nuclease2_2, DNA replication helicase 2_2	INTRON-BINDING PROTEIN AQUARIUS		3		 Tolerance and resistance - Stress tolerance	Os03g0387000	LOC_Os03g26960.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0009507 - chloroplast, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0005681 - spliceosomal complex, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
19890	_	PAB2, OsPAB2	_	OsTT1-like, TT1 paralog PAB2, 20S proteasome alpha2 subunit			2		 Biochemical character	Os02g0634900	LOC_Os02g42320.1, LOC_Os02g42320.2, LOC_Os02g42320.3, LOC_Os02g42320.4				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0019773 - proteasome core complex, alpha-subunit complex		
19891	_	OsWS1, WS1	_	wax synthase isoform 1			4	LOC_Os04g40590. a member of the membrane-bound O-acyl transferase gene family.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0481900 	LOC_Os04g40590.1				GO:0047196 - long-chain-alcohol O-fatty-acyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0010025 - wax biosynthetic process, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
19892	RS2	OsMYB91, MYB91, OsRS2, OsMYB125, MYB125	ROUGH SHEATH 2	ROUGH SHEATH2, myeloblastosis91	MYB TRANSCRIPTION FACTOR 91		12	an R2R3-type MYB gene. Q94IB1. a  rice ortholog of maize RS2. AB064519, AB071600. OsMYB125 in Abdullah-Zawawi et al. 2021.	 Other,  Tolerance and resistance - Stress tolerance	Os12g0572000	LOC_Os12g38400.2	GR:0061110			GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0010338 - leaf formation, GO:0009751 - response to salicylic acid stimulus, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006351 - transcription, DNA-dependent, GO:0000302 - response to reactive oxygen species	TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	PO:0004725 - abaxial side of leaf primordium 
19893	BAK1	OsI-BAK1, I-BAK1, OsBAK1	BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED KINASE 1	brassinosteroid insensitive 1-associated kinase 1	BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED KINASE 1		3	a rice OsBAK1 homologue. KJ669690. CT830112.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Insect resistance,  Vegetative organ - Leaf	Os03g0440900	LOC_Os03g32580.1				GO:0009611 - response to wounding, GO:0002213 - defense response to insect, GO:0005886 - plasma membrane, GO:0048366 - leaf development, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009790 - embryonic development, GO:0009960 - endosperm development, GO:0009742 - brassinosteroid mediated signaling, GO:0010431 - seed maturation, GO:0016301 - kinase activity	TO:0000615 - abscisic acid sensitivity, TO:0000424 - brown planthopper resistance, TO:0002661 - seed maturation, TO:0002677 - brassinosteroid sensitivity, TO:0000655 - leaf development trait, TO:0000205 - white-backed planthopper resistance, TO:0000189 - embryoless, TO:0000064 - embryo related trait, TO:0000605 - hydrogen peroxide content, TO:0000028 - unfilled grain number, TO:0000172 - jasmonic acid sensitivity	PO:0007633 - endosperm development stage , PO:0007632 - seed maturation stage , PO:0001050 - leaf development stage , PO:0007631 - plant embryo stage 
19894	FUWA	OsFUWA	_			fuwa	2	an NHL domain-containing protein. KF736096, KF736095. TO:0000847: panicle anatomy and morphology trait.	 Seed - Morphological traits - Grain shape,  Seed - Morphological traits	Os02g0234200 	LOC_Os02g13950.1				GO:0009616 - virus induced gene silencing, GO:0009086 - methionine biosynthetic process, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0048367 - shoot development, GO:0010050 - vegetative phase change, GO:0051726 - regulation of cell cycle	TO:0000621 - inflorescence development trait, TO:0000654 - shoot development trait, TO:0000590 - grain weight, TO:0002730 - grain shape	PO:0007089 - stem elongation stage , PO:0006085 - root meristem , PO:0020148 - shoot apical meristem , PO:0006342 - infructescence , PO:0001083 - inflorescence development stage 
19895	NPF6.5	OsNRT1.1B, NRT1.1B, OsNPF6.5	NRT1/PTR FAMILY 6.5	nitrate transporter 1.1B	NRT1/PTR FAMILY 6.5	NRT1.1B-indica, NRT1.1B-Nipponbare, osnrt1.1b, nrt1.1b	10	peptide transporter (PTR) gene family. GO:1902025: nitrate import. GO:0090408: phloem nitrate loading. TO:0020100: nitrate uptake. TO:0020098: nitrate sensitivity. a homolog of AtNRT1.1. the nitrate sensor. ClO3-  resistance QTL: qCR10.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity	Os10g0554200 	LOC_Os10g40600.1				GO:0046688 - response to copper ion, GO:0005215 - transporter activity, GO:0010167 - response to nitrate, GO:0016020 - membrane, GO:0009608 - response to symbiont, GO:0010157 - response to chlorate, GO:0006808 - regulation of nitrogen utilization, GO:0042594 - response to starvation, GO:0007584 - response to nutrient, GO:0009725 - response to hormone stimulus, GO:0009733 - response to auxin stimulus, GO:0006995 - cellular response to nitrogen starvation	TO:0000396 - grain yield, TO:0000011 - nitrogen sensitivity, TO:0000163 - auxin sensitivity, TO:0000450 - grain yield per panicle, TO:0000394 - drought related trait, TO:0000021 - copper sensitivity	PO:0025034 - leaf , PO:0009005 - root 
19896	NPF6.3	OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3	NRT1/PTR FAMILY 6.3	nitrate transporter 1.1A	NRT1/PTR FAMILY 6.3	osnrt1.1a	8	peptide transporter (PTR) gene family.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os08g0155400	LOC_Os08g05910.1, LOC_Os08g05910.2				GO:0005215 - transporter activity, GO:0006808 - regulation of nitrogen utilization, GO:2000028 - regulation of photoperiodism, flowering, GO:0060359 - response to ammonium ion, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0007584 - response to nutrient, GO:0016021 - integral to membrane, GO:0006857 - oligopeptide transport, GO:0009413 - response to flooding	TO:0000011 - nitrogen sensitivity, TO:0000450 - grain yield per panicle, TO:0000114 - flooding related trait, TO:0000396 - grain yield	PO:0009005 - root 
19897	NRT1.1C	OsNRT1.1C, OsNPF6.4, NPF6.4	NITRATE TRANSPORTER 1.1C	nitrate transporter 1.1C, NRT1/PTR FAMILY 6.4	NITRATE TRANSPORTER 1.1C		3	peptide transporter (PTR) gene family.	 Biochemical character	Os03g0103000	LOC_Os03g01290.1				GO:0016020 - membrane, GO:0005215 - transporter activity		
19898	NRT1.2	OsNRT1.2	NITRATE TRANSPORTER 1.2	nitrate transporter 1.2	NITRATE TRANSPORTER 1.2		6	peptide transporter (PTR) gene family.	 Biochemical character	Os06g0581000 	LOC_Os06g38294.1				GO:0005215 - transporter activity, GO:0016020 - membrane		
19899	_	OsNRT1.3A	_	nitrate transporter 1.3A			2	LOC_Os02g37040 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Biochemical character	Os02g0580900					GO:0005215 - transporter activity, GO:0016020 - membrane		
19900	NRT1.3B	OsNRT1.3B	NITRATE TRANSPORTER 1.3B	nitrate transporter 1.3B	NITRATE TRANSPORTER 1.3B		4	peptide transporter (PTR) gene family.	 Biochemical character	Os04g0464400 	LOC_Os04g39030.1				GO:0016021 - integral to membrane, GO:0006857 - oligopeptide transport, GO:0005215 - transporter activity		
19901	NRT1.4	OsNRT1.4	NITRATE TRANSPORTER 1.4	nitrate transporter 1.4	NITRATE TRANSPORTER 1.4		1	peptide transporter (PTR) gene family.	 Biochemical character	Os01g0556700	LOC_Os01g37590.1, LOC_Os01g37590.2				GO:0016021 - integral to membrane, GO:0006857 - oligopeptide transport, GO:0005215 - transporter activity		
19902	NRT1.5A	OsNRT1.5A	NITRATE TRANSPORTER 1.5A	nitrate transporter 1.5A	NITRATE TRANSPORTER 1.5A		2	peptide transporter (PTR) gene family. TO:0006059: cadmium content trait.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0689900 	LOC_Os02g46460.2, LOC_Os02g46460.1				GO:0010106 - cellular response to iron ion starvation, GO:0009698 - phenylpropanoid metabolic process, GO:0015112 - nitrate transmembrane transporter activity, GO:0046686 - response to cadmium ion, GO:0015691 - cadmium ion transport, GO:0006598 - polyamine catabolic process, GO:0016020 - membrane, GO:0009734 - auxin mediated signaling pathway, GO:0042398 - cellular amino acid derivative biosynthetic process, GO:0006826 - iron ion transport	TO:0000394 - drought related trait	PO:0009005 - root 
19903	NRT1.5B	OsNRT1.5B	NITRATE TRANSPORTER 1.5B	nitrate transporter 1.5B	NITRATE TRANSPORTER 1.5B		2	peptide transporter (PTR) gene family.	 Biochemical character	Os02g0716800	LOC_Os02g48570.1, LOC_Os02g48570.2				GO:0005215 - transporter activity, GO:0016020 - membrane		
19904	NRT1.7	OsNRT1.7	NITRATE TRANSPORTER 1.7	nitrate transporter 1.7	NITRATE TRANSPORTER 1.7		1	peptide transporter (PTR) gene family. TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0913300 	LOC_Os01g68510.1				GO:0016020 - membrane, GO:0010167 - response to nitrate, GO:0005215 - transporter activity		
19905	_	OsNRT3.2	_	nitrate transporter 3.2			7	LOC_Os07g48840. Q8H5F8.	 Biochemical character	Os07g0688000 	LOC_Os07g48840.1, LOC_Os07g48840.2, LOC_Os07g48840.3				GO:0047631 - ADP-ribose diphosphatase activity, GO:0046872 - metal ion binding, GO:0047734 - CDP-glycerol diphosphatase activity		
19906	MYB52	OsMYB52, OsMYB52/54, Os2R_MYB41, 2R_MYB41	MYB TRANSCRIPTION FACTOR 52	myb transcription factor 52, transcription factor MYB52, R2R3-MYB Transcription Factor 41	MYB TRANSCRIPTION FACTOR 52		3	OsMYB52/54 in Ye et al. 2015.	 Other	Os03g0720800	LOC_Os03g51110.1				GO:0009834 - secondary cell wall biogenesis, GO:0003677 - DNA binding		
19907	MYB86	OsMYB86	MYB TRANSCRIPTION FACTOR 86	myb transcription factor 86, transcription factor MYB86	MYB TRANSCRIPTION FACTOR 86		7		 Other	Os07g0634900 	LOC_Os07g44090.1, LOC_Os07g44090.2, LOC_Os07g44090.3				GO:0003677 - DNA binding, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium		
19908	MYB86-L1	OsMYB86-L1, Os2R_MYB8, 2R_MYB8	R2R3-MYB TRANSCRIPTION FACTOR 8	R2R3-MYB Transcription Factor 8	R2R3-MYB TRANSCRIPTION FACTOR 8		1		 Other	Os01g0545100  	LOC_Os01g36460.1				GO:0003677 - DNA binding		
19909	RLM1	OsMYB86-L2, MYB86-L2, OsRLM1, Os2R_MYB59, 2R_MYB59	ROLLING LEAF MUTANT 1	rolling-leaf mutant 1, R2R3-MYB Transcription Factor 59	ROLLING LEAF MUTANT 1	rlm1, rlm1-D, rlm1-m1, rlm1-m2	5	BioProject accession: PRJNA813008. GO:2000652: regulation of secondary cell wall biogenesis. TO:0006064: rolled leaf.	 Character as QTL - Yield and productivity,  Other,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os05g0543600 	LOC_Os05g46610.1				GO:0005634 - nucleus, GO:0009834 - secondary cell wall biogenesis, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding	TO:0000449 - grain yield per plant, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000731 - lignin content, TO:0000447 - filled grain number	PO:0009047 - stem 
19910	OSIPP3	OsPMEI24, PMEI24	_	pectin methylesterase inhibitor protein, pectin methylesterases inhibitor 24			6		 Biochemical character	Os05g0543000 	LOC_Os05g46530.1				GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity		PO:0009066 - anther , PO:0025281 - pollen 
19911	PHR3	OsPHR3, Os-PHR3, OsPHL1, PHL1	PHOSPHATE STARVATION RESPONSE 3	Phosphate Starvation Response3, PHOSPHATE RESPONSE3		phr3, Osphr3, osphr3-1, osphr3-2, osphr3-3	7	TO:0020102: phosphate content. a MYB coiled-coil (MYB-CC) domain-containing TF. GO:0080186: developmental vegetative growth.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0139000 	LOC_Os02g04640.1				GO:0009635 - response to herbicide, GO:0042594 - response to starvation, GO:0048830 - adventitious root development, GO:0016036 - cellular response to phosphate starvation, GO:0055081 - anion homeostasis, GO:0048767 - root hair elongation, GO:0003677 - DNA binding, GO:0048527 - lateral root development	TO:0002665 - root hair length, TO:0000168 - abiotic stress trait, TO:0000058 - herbicide sensitivity	PO:0007519 - 5 root hair formation stage 
19912	_	OsGME2, GME2	_	GDP-D-mannose epimerase 2		osgme2	11	Q2R1V8.	 Character as QTL - Yield and productivity,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os11g0591100	LOC_Os11g37890.1, LOC_Os11g37890.2, LOC_Os11g37890.3				GO:0051287 - NAD or NADH binding, GO:0047918 - GDP-mannose 3,5-epimerase activity, GO:0005829 - cytosol, GO:0019853 - L-ascorbic acid biosynthetic process	TO:0000371 - yield trait, TO:0000448 - filled grain percentage, TO:0000382 - 1000-seed weight, TO:0000436 - spikelet sterility	
19913	GGP	OsGGP	GDP-L-GALACTOSE PHOSPHORYLASE	GDP-L-galactose phosphorylase	GDP-L-GALACTOSE PHOSPHORYLASE	osggp	12	Q2R1V8. MH12t0102300. GO:0140576: ascorbate homeostasis.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0190000	LOC_Os12g08810.1				GO:0010378 - temperature compensation of the circadian clock, GO:0009266 - response to temperature stimulus, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0006979 - response to oxidative stress, GO:0080048 - GDP-D-glucose phosphorylase activity, GO:0007623 - circadian rhythm	TO:0002657 - oxidative stress, TO:0000457 - total biomass yield, TO:0000432 - temperature response trait, TO:0000014 - panicle weight, TO:0000152 - panicle number, TO:0000430 - germination rate	
19914	_		_	a homologue of OsGGP			1		 Biochemical character	Os01g0901300	LOC_Os01g67520.1, LOC_Os01g67520.2, LOC_Os01g67520.3				GO:0080048 - GDP-D-glucose phosphorylase activity		
19915	GW7	GL7, OsGL7, OsGW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7, GL7/SLG7, Chalk7, OsChalk7	GRAIN LENGTH 7	Grain Length on Chromosome 7, grain width QTL on chromosome 7, Slender grain on chromosome 7		GW7TFA, gw7HJX74, slg7, GL7-A, GL7-B, Chalk7Cyp, Chalk7ZS	7	a protein homologous to Arabidopsis thaliana LONGIFOLIA proteins (LONGIFOLIA 1 and LONGIFOLIA 2). a TON1 RECRUIT MOTIF (TRM)-containing protein. a TONNEAU1-recruiting motif protein. KP899557. TO:0000832: flag leaf morphology trait. TO:0000975: grain width.	 Seed - Physiological traits,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf	Os07g0603300	LOC_Os07g41200.1				GO:0009826 - unidimensional cell growth, GO:0048316 - seed development, GO:0010229 - inflorescence development, GO:0005886 - plasma membrane	TO:0000162 - seed quality, TO:0000266 - chalky endosperm, TO:0002731 - grain length to width ratio, TO:0000382 - 1000-seed weight, TO:0002757 - flag leaf length, TO:0000653 - seed development trait, TO:0000621 - inflorescence development trait, TO:0000397 - grain size, TO:0000734 - grain length, TO:0002730 - grain shape, TO:0000371 - yield trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
19916	_		_	a negative regulator of GL7			7	a protein homologous to Arabidopsis thaliana LONGIFOLIA proteins. a TON1 RECRUIT MOTIF (TRM)-containing protein. KP899557. LOC_Os07g41200.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os07g0603400	LOC_Os07g41210.1				GO:0009826 - unidimensional cell growth	TO:0000734 - grain length, TO:0000397 - grain size	
19917	_	GL7-S1	_				7	We found two full-length cDNAs transcribed from Os07g0603300 in P13 (landrace Ping13), which we named GL7-S1 and GL7-S2. GL7-S1 and GL7-S2 encode exactly the same polypeptide and exhibited similar transcript levels. This tandem duplication of a 17.1-kb segment at the GL7 locus leads to upregulation of GL7 (Os07g0603300) and downregulation of its nearby negative regulator (Os07g0603400) (Wang et al. 2015).	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity						GO:0009826 - unidimensional cell growth	TO:0000734 - grain length, TO:0000397 - grain size	
19918	_	GL7-S2	_				7	We found two full-length cDNAs transcribed from Os07g0603300 in P13 (landrace Ping13), which we named GL7-S1 and GL7-S2. GL7-S1 and GL7-S2 encode exactly the same polypeptide and exhibited similar transcript levels. This tandem duplication of a 17.1-kb segment at the GL7 locus leads to upregulation of GL7 (Os07g0603300) and downregulation of its nearby negative regulator (Os07g0603400) (Wang et al. 2015).	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape						GO:0009826 - unidimensional cell growth	TO:0000397 - grain size, TO:0000734 - grain length	
19919	_	OsTON1b, TON1b	_	TONNEAU1b, TONNEAU 1b			11	LOC_Os11g01170. a rice homolog of Arabidopsis thaliana TON1.		Os11g0102600 	LOC_Os11g01170.1						
19920	_	OsTON2, TON2	_	TONNEAU2, TONNEAU 2			5	LOC_Os05g05710. a homolog of Arabidopsis PP2A (also known as FASS or TON2). GO:0071555: cell wall organization.		Os05g0149800	LOC_Os05g05710.1				GO:0009524 - phragmoplast, GO:0048765 - root hair cell differentiation, GO:0045010 - actin nucleation, GO:0030865 - cortical cytoskeleton organization, GO:0030359 - protein phosphatase type 2B regulator activity, GO:0010090 - trichome morphogenesis, GO:0009826 - unidimensional cell growth, GO:0007155 - cell adhesion, GO:0005819 - spindle, GO:0005634 - nucleus, GO:0005509 - calcium ion binding, GO:0000913 - preprophase band formation, GO:0000226 - microtubule cytoskeleton organization		
19921	EDA16	BRHIS1, Os BRHIS1, OsEDA16, CHR725, OsCHR725, OsRING433, RING433	EMBRYO SAC DEVELOPMENT ARREST 16	BIT-responsive Histone-interacting SNF2 ATPase 1, embryo sac development arrest 16, chromatin remodeling factor 725, RING-type E3 ubiquitin ligase 433	BIT-RESPONSIVE HISTONE-INTERACTING SNF2 ATPASE 1		8	a rice SWI/SNF2 ATPase gene. a putative RING finger SNF2 ATPase. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0180300	LOC_Os08g08220.1, LOC_Os08g08220.2, LOC_Os08g08220.3				GO:0031348 - negative regulation of defense response, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus, GO:0044238 - primary metabolic process, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0008094 - DNA-dependent ATPase activity, GO:0046872 - metal ion binding, GO:0044260 - cellular macromolecule metabolic process, GO:0009651 - response to salt stress, GO:0006281 - DNA repair	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
19922	_	OsTINP1	_	TGF-b-inducible nuclear protein 1			7	a rice homolog of human TGF-b-inducible nuclear protein 1 and yeast NSA2.		Os07g0673100	LOC_Os07g47580.1, LOC_Os07g47580.2, LOC_Os07g47580.3				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0051604 - protein maturation		
19923	H2B.7	OsH2B.7, OsFBO1, FBO1	HISTONE H2B.7	histone H2B.7, F-box-type E3 ubiquitin ligase O1	HISTONE H2B.7		1	Q7GBK0.		Os01g0152900	LOC_Os01g05970.1				GO:0046982 - protein heterodimerization activity, GO:0000788 - nuclear nucleosome, GO:0003677 - DNA binding, GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0030527 - structural constituent of chromatin		
19924	_	H2A.Xa	_	histone H2A.Xa													
19925	_	H2A.Xb	_	histone H2A.Xb													
19926	_	H2A.3	_	histone H2A.3													
19927	_	OsILR1, ILR1	_	IAA-LEUCINE RESISTANT1, IAA-LEUCINE RESISTANT 1			7	Q8H3C9.	 Biochemical character	Os07g0249700	LOC_Os07g14590.1				GO:0016787 - hydrolase activity		
19929	ORAP1	OsORAP1, OzT9, AO, OsAAO4, AAO4	OZONE-RESPONSIVE APOPLASTIC PROTEIN 1	OZONE-RESPONSIVE APOPLASTIC PROTEIN1, ASCORBATE OXIDASE, ascorbate oxidase 4	OZONE-RESPONSIVE APOPLASTIC PROTEIN 1		9	OzT9 is a quantitative trait locus for ozone stress tolerance. GO:0072593  reactive oxygen species metabolic process. osa-miR528 target gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os09g0365900	LOC_Os09g20090.1				GO:0043068 - positive regulation of programmed cell death, GO:0005507 - copper ion binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0048046 - apoplast, GO:0010193 - response to ozone, GO:0016491 - oxidoreductase activity	TO:0000276 - drought tolerance, TO:0000074 - blast disease	PO:0009005 - root , PO:0009006 - shoot system 
19930	AAO1	OsAAO1	ASCORBATE OXIDASE 1	AO-like, AO homolog, ASCORBATE OXIDASE homolog, ascorbate oxidase 1	ASCORBATE OXIDASE 1		6		 Tolerance and resistance - Stress tolerance	Os06g0567200	LOC_Os06g37080.1				GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0009005 - root 
19931	AAO2	OsAAO2, L-APX, RIP5, OsRIP5	ASCORBATE OXIDASE 2	AO-like, AO homolog, ASCORBATE OXIDASE homolog, ascorbate oxidase 2, REL1 interacting protein 5	ASCORBATE OXIDASE 2	rip5-ko, rip5-ko#6, rip5-ko#12	6	targeted by osa-miR528-5p (Qin et al. 2017). GO:0080148: negative regulation of response to water deprivation. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0567900	LOC_Os06g37150.1				GO:0019852 - L-ascorbic acid metabolic process, GO:0009414 - response to water deprivation, GO:0005507 - copper ion binding, GO:0009507 - chloroplast, GO:0016491 - oxidoreductase activity, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009047 - stem , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0020104 - leaf sheath 
19932	AAO5	OsAAO5	ASCORBATE OXIDASE 5	AO-like, AO homolog, ASCORBATE OXIDASE homolog, ascorbate oxidase 5, Os-l-ascorbate oxidase, l-ascorbate oxidase	ASCORBATE OXIDASE 5		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0507300	LOC_Os09g32952.1				GO:0005507 - copper ion binding, GO:0009414 - response to water deprivation, GO:0016491 - oxidoreductase activity, GO:0005576 - extracellular region	TO:0000276 - drought tolerance	
19933	_	OsCMT2, CMT2	_	chromomethylase 2		oscmt2-2	5	AB360585.	 Biochemical character	Os05g0224800/Os05g0224900	LOC_Os05g13780.1				GO:0006306 - DNA methylation, GO:0003677 - DNA binding, GO:0008168 - methyltransferase activity		
19934	TOS19	Tos19, Lullaby	RETROTRANSPOSON 19	Retrotransposon19, Retrotransposon 19, Retrotransposon-19, retrotransposon Tos19, retrotransposon Lullaby				a tissue culture-activated copia retrotransposons. D85878. The Nipponbare genome harbours two native copies of Lullaby on chromosomes 6 and 9. 	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19935	_	LINE1-6_OS	_	RETROTRANSPOSON LINE1-6_OS, non-LTR retrotransposable element LINE1-6_OS				a LINE element.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19936	DASHENG	Dasheng	RETROTRANSPOSON DASHENG	Dasheng retrotransposon, retrotransposon Dasheng, Dasheng element				a pericentromeric clustered high-copy-number non-autonomous gypsy retrotransposon. a Nonautonomous Long Terminal Repeat Element.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19937	TOS6	Tos6	RETROTRANSPOSON 6	Retrotransposon6, Retrotransposon 6, Retrotransposon-6, retrotransposon Tos6				D85865.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19938	TOS7	Tos7	RETROTRANSPOSON 7	Retrotransposon7, Retrotransposon 7, Retrotransposon-7, retrotransposon Tos7				D85871.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19939	TOS8	Tos8	RETROTRANSPOSON 8	Retrotransposon8, Retrotransposon 8, Retrotransposon-8, retrotransposon Tos8				D85866.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19940	TOS9	Tos9	RETROTRANSPOSON 9	Retrotransposon9, Retrotransposon 9, Retrotransposon-9, retrotransposon Tos9				D85867.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19941	TOS10	Tos10	RETROTRANSPOSON 10	Retrotransposon10, Retrotransposon 10, Retrotransposon-10, retrotransposon Tos10				D85868.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19942	TOS11	Tos11	RETROTRANSPOSON 11	Retrotransposon11, Retrotransposon 11, Retrotransposon-11, retrotransposon Tos11				D85869.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19943	TOS12	Tos12	RETROTRANSPOSON 12	Retrotransposon12, Retrotransposon 12, Retrotransposon-12, retrotransposon Tos12				D85870.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19944	TOS13	Tos13	RETROTRANSPOSON 13	Retrotransposon13, Retrotransposon 13, Retrotransposon-13, retrotransposon Tos13				D85872.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19945	TOS14	Tos14	RETROTRANSPOSON 14	Retrotransposon14, Retrotransposon 14, Retrotransposon-14, retrotransposon Tos14				D85873.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19946	TOS15	Tos15	RETROTRANSPOSON 15	Retrotransposon15, Retrotransposon 15, Retrotransposon-15, retrotransposon Tos15				D85874.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19947	TOS16	Tos16	RETROTRANSPOSON 16	Retrotransposon16, Retrotransposon 16, Retrotransposon-16, retrotransposon Tos16				D85875.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19948	TOS18	Tos18	RETROTRANSPOSON 18	Retrotransposon18, Retrotransposon 18, Retrotransposon-18, retrotransposon Tos18				D85877.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19949	TOS20	Tos20	RETROTRANSPOSON 20	Retrotransposon20, Retrotransposon 20, Retrotransposon-20, retrotransposon Tos20				D85879.	 Biochemical character						GO:0006313 - transposition, DNA-mediated, GO:0004803 - transposase activity		
19950	TOS4	Tos4	_	transposon of O. sativa 4, retrotransposon Tos4				a copia-like element.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19951	TOS5	Tos5	_	transposon of O. sativa 5, retrotransposon Tos5				a copia-like element.	 Biochemical character						GO:0004803 - transposase activity, GO:0006313 - transposition, DNA-mediated		
19952	_	OsSCAR2, SCAR2, OsSCAR3, SCAR3	_	Suppressor of cAMP Receptor-Like Protein 2, SCAR-like Protein 2, suppressor of cAMP receptor 3			3	LOC_Os03g18710. SCAR3 in Zhang et al. 2008. OsSCAR2 in Bai et al. 2015.		Os03g0298700 	LOC_Os03g18710.1				GO:0030036 - actin cytoskeleton organization, GO:0005856 - cytoskeleton		
19953	_	OsSCAR3, SCAR3, OsSCAR2, SCAR2	_	Suppressor of cAMP Receptor-Like Protein 3, SCAR-like Protein 3, suppressor of cAMP receptor 2			3	Q84TX2. SCAR2 in Zhang et al. 2008. OsSCAR3 in Bai et al. 2015.		Os03g0816900/Os03g0817000 	LOC_Os03g60240.1, LOC_Os03g60240.2				GO:0005856 - cytoskeleton, GO:0005737 - cytoplasm, GO:0030036 - actin cytoskeleton organization		
19954	_	OsSCAR4, SCAR4	_	Suppressor of cAMP Receptor-Like Protein 4, SCAR-like Protein 4, suppressor of cAMP receptor 4			7	LOC_Os07g49140.		Os07g0691700	LOC_Os07g49140.1				GO:0030036 - actin cytoskeleton organization, GO:0005856 - cytoskeleton		
19955	_	OsFd3, Fd3	_	ferredoxin 3			3	LOC_Os03g61960.	 Biochemical character	Os03g0835900 	LOC_Os03g61960.1, LOC_Os03g61960.2				GO:0046872 - metal ion binding, GO:0022900 - electron transport chain, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0009055 - electron carrier activity		
19956	FDC1	OsFdC1, FdC1	FERREDOXIN-LIKE PROTEIN WITH C-TERMINAL EXTENSION 1	ferredoxin-like protein with C-terminal extension 1	FERREDOXIN-LIKE PROTEIN WITH C-TERMINAL EXTENSION 1		3	OsFdC1 is the ortholog of AtFdC1.	 Biochemical character	Os03g0659200	LOC_Os03g45710.1				GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009507 - chloroplast, GO:0006364 - rRNA processing, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009055 - electron carrier activity, GO:0022900 - electron transport chain, GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0015995 - chlorophyll biosynthetic process, GO:0006098 - pentose-phosphate shunt		
19957	HDY1	OsFdC2, FdC2, OsHDY1, PetF-2	HEADING DATE DELAY AND YELLOWISH LEAF 1	ferredoxin-like protein with C-terminal extension 2, Ferredoxin C2, Ferredoxin-2	FERREDOXIN C2	hdy1	3	OsFdC2 is the ortholog of AtFdC2. a predicted target of osa-miR1850.1.	 Reproductive organ - Heading date,  Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os03g0685000 	LOC_Os03g48040.1, LOC_Os03g48040.2				GO:0006098 - pentose-phosphate shunt, GO:0009507 - chloroplast, GO:0022900 - electron transport chain, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009725 - response to hormone stimulus, GO:0048573 - photoperiodism, flowering, GO:0009409 - response to cold, GO:0010103 - stomatal complex morphogenesis, GO:0009055 - electron carrier activity, GO:0009688 - abscisic acid biosynthetic process, GO:0046872 - metal ion binding	TO:0000401 - plant growth hormone sensitivity, TO:0000295 - chlorophyll-b content, TO:0001015 - photosynthetic rate, TO:0000326 - leaf color, TO:0000137 - days to heading, TO:0000293 - chlorophyll-a content, TO:0000303 - cold tolerance	PO:0025034 - leaf 
19958	_	OsPR5, PR5	_	pathogenesis-related gene 5, Pathogenesis-related protein class 5 gene, PATHOGENESIS-RELATED PROTEIN 5			3	U77657.	 Tolerance and resistance - Disease resistance	Os03g0661600	LOC_Os03g45960.1						
19959	LSI3	Lsi3, OsLsi3, Lsi3/SIET2, SIET2	LOW SILICON RICE 3	low silicon 3, silicon efflux transporter 2, Si efflux transporter 2	SILICON EFFLUX TRANSPORTER 2		10	a Si efflux transporter (SIET/Lsi2-like) homolog. TO:0006054: arsenic content trait.	 Vegetative organ - Root	Os10g0547500	LOC_Os10g39980.1				GO:0016021 - integral to membrane, GO:0032523 - silicon efflux transmembrane transporter activity, GO:0055085 - transmembrane transport		
19960	SIET3	OsSIET3	SILICON EFFLUX TRANSPORTER 3	silicon efflux transporter 3, Si efflux transporter 3	SILICON EFFLUX TRANSPORTER 3		2	a Si efflux transporter (SIET/Lsi2-like) homolog.	 Biochemical character	Os02g0822100	LOC_Os02g57620.1				GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane		
19962	SIET5	OsSIET5	SILICON EFFLUX TRANSPORTER 5	silicon efflux transporter 5, Si efflux transporter 5	SILICON EFFLUX TRANSPORTER 5		10	a Si efflux transporter (SIET/Lsi2-like) homolog.	 Biochemical character	Os10g0447900	LOC_Os10g31040.1, LOC_Os10g31040.2, LOC_Os10g31040.3, LOC_Os10g31040.4, LOC_Os10g31040.5, LOC_Os10g31040.6				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
19963	_	HMGB	_	High mobility group protein B, High mobility group subgroup B protein			8	an HMGbox DNA-binding protein. LOC_Os08g01100.	 Other,  Tolerance and resistance - Stress tolerance	Os08g0101100	LOC_Os08g01100.1				GO:0009409 - response to cold, GO:0003700 - transcription factor activity, GO:0006261 - DNA-dependent DNA replication	TO:0000303 - cold tolerance	
19964	_	OsNAC2	_						 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19965	_	OsMYB46	_						 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19966	_	OsF-BOX28	_						 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19967	YS53	GSA, GSAT, HEML, OsGSA, OsGSAT, OsHEML, OsGSAM, GSAM, OsYS53	_	"\"Glutamate-1-semialdehyde 2, 1-aminomutase\", Glutamate-1-semialdehyde aminotransferase"	GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE	ys53	8	Q6YZE2. PO:0030123: panicle inflorescence. GO:1901463: regulation of tetrapyrrole biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Biochemical character,  Vegetative organ - Culm	Os08g0532200 	LOC_Os08g41990.1				GO:0015995 - chlorophyll biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0009658 - chloroplast organization, GO:0010109 - regulation of photosynthesis, GO:0009651 - response to salt stress, GO:0008483 - transaminase activity, GO:0033014 - tetrapyrrole biosynthetic process, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity, GO:0009507 - chloroplast	TO:0000145 - internode length, TO:0000316 - photosynthetic ability, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0001027 - net photosynthetic rate, TO:0000152 - panicle number, TO:0000455 - seed set percent, TO:0000456 - spikelet number, TO:0002715 - chloroplast development trait, TO:0000207 - plant height, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0006001 - salt tolerance, TO:0000293 - chlorophyll-a content	PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009049 - inflorescence , PO:0025034 - leaf 
19968	_	ALAD, HEMB, OsALAD, OsHEMB, hemB	_	5-aminolevulinate dehydrogenase, ALA dehydratase, porphobilinogen synthase			6	Q5Z8V9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0704600 	LOC_Os06g49110.3, LOC_Os06g49110.1, LOC_Os06g49110.2				GO:0046872 - metal ion binding, GO:0004655 - porphobilinogen synthase activity, GO:0010114 - response to red light, GO:0046686 - response to cadmium ion, GO:0009637 - response to blue light, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0015995 - chlorophyll biosynthetic process, GO:0009507 - chloroplast	TO:0000159 - blue light sensitivity, TO:0000158 - red light sensitivity	
19969	SPL42	PBD, PBGD, HEMC, OsSPL42, OsPBGD, OsPBD	SPOTTED LEAF 42	Porphobilinogen deaminase, spotted leaf42	PORPHOBILINOGEN DEAMINASE	spl42	2	Q6H6D2. GO:2000024: regulation of leaf development. PO:0030123: panicle inflorescence. GO:1900055: regulation of leaf senescence. GO:2000377: regulation of reactive oxygen species biosynthetic process.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity	Os02g0168800 	LOC_Os02g07230.1, LOC_Os02g07230.2, LOC_Os02g07230.3				GO:0006744 - ubiquinone biosynthetic process, GO:0009697 - salicylic acid biosynthetic process, GO:0006364 - rRNA processing, GO:0009409 - response to cold, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0004418 - hydroxymethylbilane synthase activity, GO:0019684 - photosynthesis, light reaction, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009408 - response to heat, GO:0031347 - regulation of defense response, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence, GO:0010109 - regulation of photosynthesis, GO:0048366 - leaf development, GO:0009451 - RNA modification, GO:0018160 - peptidyl-pyrromethane cofactor linkage, GO:0006098 - pentose-phosphate shunt, GO:0009965 - leaf morphogenesis, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009814 - defense response, incompatible interaction, GO:0019344 - cysteine biosynthetic process, GO:0030154 - cell differentiation, GO:0009073 - aromatic amino acid family biosynthetic process	TO:0000326 - leaf color, TO:0000655 - leaf development trait, TO:0000249 - leaf senescence, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0002715 - chloroplast development trait, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0002757 - flag leaf length, TO:0000455 - seed set percent, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root , PO:0001050 - leaf development stage , PO:0009049 - inflorescence 
19970	_	UroS	_	Uroporphyrinogen-III synthase			3	Q10QR9.	 Biochemical character	Os03g0186100 	LOC_Os03g08730.1				GO:0006780 - uroporphyrinogen III biosynthetic process, GO:0004852 - uroporphyrinogen-III synthase activity, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0015995 - chlorophyll biosynthetic process, GO:0009507 - chloroplast		
19971	LM3	UroD, URO-D, OsLM3, OsUroD, OsURO-D	LESION MIMIC 3	Uroporphyrinogen-III decarboxylase, lesion mimic 3		lm3	3	Q10LR9.	 Reproductive organ - Heading date,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Lesion mimic	Os03g0337600  	LOC_Os03g21900.1				GO:0015995 - chlorophyll biosynthetic process, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0004853 - uroporphyrinogen decarboxylase activity, GO:0009507 - chloroplast, GO:0048573 - photoperiodism, flowering	TO:0000063 - mimic response, TO:0000137 - days to heading, TO:0000207 - plant height	
19972	RLIN1	CPO, CPOX, LLM1, HEMF, OsRLIN1, OsCPO, OsCPOX, OsLLM1, OsHEMF	RICE LESION INITIATION 1	Coproporphyrinogen oxidase, coproporphyrinogen III oxidase, leaf lesion mimic mutant 1		llm1, rlin1	4	Q7XPL2. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Lesion mimic,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0610800 	LOC_Os04g52130.1				GO:0009507 - chloroplast, GO:0009416 - response to light stimulus, GO:0012501 - programmed cell death, GO:0004109 - coproporphyrinogen oxidase activity, GO:0042803 - protein homodimerization activity, GO:0015995 - chlorophyll biosynthetic process, GO:0033014 - tetrapyrrole biosynthetic process, GO:0042742 - defense response to bacterium, GO:0006782 - protoporphyrinogen IX biosynthetic process	TO:0000175 - bacterial blight disease resistance, TO:0000075 - light sensitivity, TO:0000063 - mimic response	
19973	SPRL1	OsPPX, PPX, PPO1, OsPPO1, OsSPRL1, LMM8, OsLMM8	SPOTTED AND ROLLED LEAF 1	Proporphyrinogen oxidase, protoporphyrinogen oxidase 1, Protogen oxidase 1, spotted and rolled leaf 1, Protoporphyrinogen IX Oxidase 1, Protogen IX oxidase 1, Lesion-mimic 8	PROPORPHYRINOGEN OXIDASE	sprl1, lmm8	1	Q9AR38. PO:0030123: panicle inflorescence. TO:0006064: rolled leaf. GO:0097300: programmed necrotic cell death. GO:2000377: regulation of reactive oxygen species metabolic process.	 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Coloration - Chlorophyll,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Reproductive organ - Heading date	Os01g0286600 	LOC_Os01g18320.1				GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0001558 - regulation of cell growth, GO:0012501 - programmed cell death, GO:0009646 - response to absence of light, GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity, GO:0033014 - tetrapyrrole biosynthetic process, GO:0009635 - response to herbicide, GO:0009658 - chloroplast organization, GO:0010939 - regulation of necrotic cell death, GO:0009642 - response to light intensity, GO:0009266 - response to temperature stimulus, GO:0048573 - photoperiodism, flowering, GO:0040008 - regulation of growth, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0010114 - response to red light, GO:0006782 - protoporphyrinogen IX biosynthetic process	TO:0002715 - chloroplast development trait, TO:0000522 - stomatal conductance, TO:0001018 - transpiration rate, TO:0000605 - hydrogen peroxide content, TO:0000326 - leaf color, TO:0000058 - herbicide sensitivity, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000456 - spikelet number, TO:0000152 - panicle number, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000137 - days to heading, TO:0000432 - temperature response trait, TO:0000460 - light intensity sensitivity, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000158 - red light sensitivity, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000734 - grain length, TO:0000145 - internode length, TO:0000132 - basal internode diameter, TO:0002637 - leaf size, TO:0000089 - panicle type, TO:0000371 - yield trait, TO:0000316 - photosynthetic ability, TO:0001027 - net photosynthetic rate	PO:0009005 - root , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0025034 - leaf 
19974	FC1	OsFC1, OsGUN6-1, GUN6-1	FERROCHELATASE 1	Ferrochelatase 1, Genome uncoupled 6-1	FERROCHELATASE 1		9	Q69TB1.	 Biochemical character	Os09g0297000 	LOC_Os09g12560.1, LOC_Os09g12560.2				GO:0010363 - regulation of plant-type hypersensitive response, GO:0009611 - response to wounding, GO:0009507 - chloroplast, GO:0052542 - callose deposition during defense response, GO:0006612 - protein targeting to membrane, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0043069 - negative regulation of programmed cell death, GO:0006783 - heme biosynthetic process, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0004325 - ferrochelatase activity		
19975	FC2	OsFC2, OsGUN6-2, GUN6-2	FERROCHELATASE 2	Ferrochelatase 2, Genome uncoupled 6-2	FERROCHELATASE 2		5	Q0DIV0.	 Biochemical character	Os05g0361200 	LOC_Os05g29760.5, LOC_Os05g29760.4, LOC_Os05g29760.1, LOC_Os05g29760.2, LOC_Os05g29760.3				GO:0006783 - heme biosynthetic process, GO:0004325 - ferrochelatase activity, GO:0009507 - chloroplast		
19977	_		_				1	LOC_Os01g48690. a predicted lethal-phenotype gene in Lloyd et al. 2015.		Os01g0678600	LOC_Os01g48690.1, LOC_Os01g48690.2				GO:0016020 - membrane, GO:0009570 - chloroplast stroma, GO:0006364 - rRNA processing, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0009941 - chloroplast envelope, GO:0006412 - translation, GO:0015995 - chlorophyll biosynthetic process, GO:0005840 - ribosome		
19978	PIE1	OsPIE1, CHR709, OsCHR709	PHOTOPERIOD-INDEPENDENT EARLY FLOWERING1	PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, chromatin remodeling factor 709	CHROMATIN REMODELING FACTOR 709		2	a PIE1 ortholog of Arabidopsis in rice. a central ATPase subunit of rice SWR1-C. a predicted lethal-phenotype gene in Lloyd et al. 2015. GO:0071555: cell wall organization.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0689800 	LOC_Os02g46450.1, LOC_Os02g46450.2				GO:0000812 - Swr1 complex, GO:0046686 - response to cadmium ion, GO:0043486 - histone exchange, GO:0042393 - histone binding, GO:0016887 - ATPase activity, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0045010 - actin nucleation, GO:0007155 - cell adhesion, GO:0006338 - chromatin remodeling, GO:0048765 - root hair cell differentiation, GO:0048453 - sepal formation, GO:0010090 - trichome morphogenesis, GO:0010228 - vegetative to reproductive phase transition, GO:0005618 - cell wall, GO:0016514 - SWI/SNF complex, GO:0042742 - defense response to bacterium, GO:0009793 - embryonic development ending in seed dormancy, GO:0000278 - mitotic cell cycle, GO:0005634 - nucleus, GO:0009910 - negative regulation of flower development, GO:0048451 - petal formation, GO:0003002 - regionalization	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
19979	_		_				3	LOC_Os03g46640. a predicted lethal-phenotype gene in Lloyd et al. 2015. Q10FF9.	 Biochemical character	Os03g0669100 	LOC_Os03g46640.1				GO:0006226 - dUMP biosynthetic process, GO:0005737 - cytoplasm, GO:0046081 - dUTP catabolic process, GO:0004170 - dUTP diphosphatase activity, GO:0000287 - magnesium ion binding		
19981	SIDP366	OsSIDP366	STRESS INDUCED DUF1644 PROTEIN 366	Stress induced DUF1644 protein 366	STRESS INDUCED DUF1644 PROTEIN 366		6	GO:1901002: positive regulation of response to salt stress. GO:2000070: regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance	Os06g0693700 	LOC_Os06g47860.1, LOC_Os06g47860.2				GO:0009414 - response to water deprivation, GO:0046872 - metal ion binding, GO:0044464 - cell part, GO:0010494 - stress granule, GO:0009651 - response to salt stress, GO:0000932 - cytoplasmic mRNA processing body, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
19982	DCP2	OsDCP2, NUDX16, OsNUDX16	DECAPPING 2	Nudix Hydrolase 16	NUDIX HYDROLASE 16		2	a homolog of AtDCP2.  PBs  (processing bodies) marker.	 Biochemical character	Os02g0805900 	LOC_Os02g56210.1				GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA, GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, GO:0030145 - manganese ion binding, GO:0050072 - m7G(5')pppN diphosphatase activity, GO:0016787 - hydrolase activity, GO:0003723 - RNA binding, GO:0000932 - cytoplasmic mRNA processing body, GO:0005737 - cytoplasm		
19983	_	OsPABPC3, PABPC3	_				4	a homolog of AtPABP8. LOC_Os04g42600. SGs  (stress granules) marker.		Os04g0504800 	LOC_Os04g42600.1, LOC_Os04g42600.2				GO:0000166 - nucleotide binding, GO:0005737 - cytoplasm, GO:0003723 - RNA binding		
19984	_		_	DUF1644 family protein			2	LOC_Os02g53110.		Os02g0770600 	LOC_Os02g53110.1, LOC_Os02g53110.2						
19985	_		_	DUF1644 family protein			2	BGIOSGA006228  in indica. 	 Character as QTL - Yield and productivity	Os02g0566500 	LOC_Os02g35840.1					TO:0002759 - grain number, TO:0000396 - grain yield	
19986	SIDP301	OsSIDP301	STRESS-INDUCED DUF1644 PROTEIN 301	DUF1644 family protein, stress-induced DUF1644 protein 301	STRESS-INDUCED DUF1644 PROTEIN 301		4	GO:1901001: negative regulation of response to salt stress. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Seed - Morphological traits - Grain shape	Os04g0448100 	LOC_Os04g37530.1				GO:0080050 - regulation of seed development, GO:0045454 - cell redox homeostasis, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0030307 - positive regulation of cell growth, GO:0005634 - nucleus	TO:0000397 - grain size, TO:0000495 - chlorophyll content, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0000040 - panicle length, TO:0000608 - sodium content, TO:0000557 - secondary branch number, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009030 - carpel , PO:0009029 - stamen , PO:0009010 - seed , PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
19987	_		_	DUF1644 family protein			9	LOC_Os09g27860.		Os09g0451800 	LOC_Os09g27860.1						
19988	_		_	DUF1644 family protein			2	LOC_Os02g05710.		Os02g0150900	LOC_Os02g05710.1				GO:0046872 - metal ion binding		
19989	_		_	DUF1644 family protein			7	LOC_Os07g23790.		Os07g0419800 	LOC_Os07g23790.1, LOC_Os07g23790.2, LOC_Os07g23790.3, LOC_Os07g23790.4, LOC_Os07g23790.5, LOC_Os07g23790.6, LOC_Os07g23790.7, LOC_Os07g23790.8				GO:0000956 - nuclear-transcribed mRNA catabolic process		
19990	_		_	DUF1644 family protein			4	LOC_Os04g04010.		Os04g0129400  	LOC_Os04g04010.1						
19991	SIDP361	OsSIDP361	STRESS INDUCED DUF1644 PROTEIN 361	Stress induced DUF1644 protein 361	STRESS INDUCED DUF1644 PROTEIN 361		1	DUF1644 family protein..	 Tolerance and resistance - Stress tolerance	Os01g0612600  	LOC_Os01g42700.5, LOC_Os01g42700.4, LOC_Os01g42700.3, LOC_Os01g42700.1, LOC_Os01g42700.2				GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0009269 - response to desiccation, GO:0009651 - response to salt stress	TO:0006002 - proline content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
19992	ARID6	OsARID6	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 6	AT-rich Interaction Domain-containing protein 6, ARID transcription factor 6, AT-Rich Interaction Domain-containing transcription factor 6, ARID-containing transcription factor 6	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 6		9	ARID protein, HMG subfamily.	 Tolerance and resistance - Insect resistance	Os09g0544500	LOC_Os09g37250.1				GO:0002213 - defense response to insect, GO:0003677 - DNA binding, GO:0016740 - transferase activity	TO:0000424 - brown planthopper resistance	
19993	SIP5	OsARID3, ARID3, OsSIP5	SKIP INTERACTING PROTEIN 5	AT-rich Interaction Domain-containing protein 3, SKIP interacting protein 5, SKIPa-interacting protein 5, SKIPa-interacting protein 5, ARID transcription factor 3, AT-Rich Interaction Domain-containing transcription factor 3, ARID-containing transcription factor 3	SKIP INTERACTING PROTEIN 5	Osarid3	6	EU368695. ARID protein, Hsp20 subfamily. GO:1902182: shoot apical meristem development.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Shoot apical meristem(SAM)	Os06g0622300 	LOC_Os06g41730.1, LOC_Os06g41730.2				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009691 - cytokinin biosynthetic process, GO:0010073 - meristem maintenance, GO:0010252 - auxin homeostasis, GO:0010600 - regulation of auxin biosynthetic process, GO:0002213 - defense response to insect, GO:0006355 - regulation of transcription, DNA-dependent	TO:0002660 - cytokinin content, TO:0006020 - shoot apical meristem development, TO:0002638 - shoot meristem development, TO:0000276 - drought tolerance, TO:0000424 - brown planthopper resistance, TO:0002672 - auxin content	PO:0020148 - shoot apical meristem 
19994	ARID4	OsARID4	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 4	AT-rich Interaction Domain-containing protein 4, ARID transcription factor 4, AT-Rich Interaction Domain-containing transcription factor 4, ARID-containing transcription factor 4	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 4		8	ARID protein, PHD subfamily.	 Tolerance and resistance - Insect resistance	Os08g0451400	LOC_Os08g35000.1, LOC_Os08g35000.2, LOC_Os08g35000.3, LOC_Os08g35000.4, LOC_Os08g35000.5				GO:0003677 - DNA binding, GO:0002213 - defense response to insect, GO:0008270 - zinc ion binding	TO:0000424 - brown planthopper resistance	
19995	ARID5	OsARID5	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 5	AT-rich Interaction Domain-containing protein 5, ARID transcription factor 5, AT-Rich Interaction Domain-containing transcription factor 5, ARID-containing transcription factor 5	AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 5		9	ARID protein, PHD subfamily.	 Tolerance and resistance - Insect resistance	Os09g0434100 	LOC_Os09g26390.1, LOC_Os09g26390.2, LOC_Os09g26390.3				GO:0002213 - defense response to insect, GO:0003677 - DNA binding, GO:0008270 - zinc ion binding	TO:0000424 - brown planthopper resistance	
19996	REM4.1	OsREM4.1	REMORIN 4.1	remorin, Remorin 4.1, remorin group 4 member 1	REMORIN 4.1		7	OsREM4.1 in Raffaele et al. 2007 and Gui et al. 2014. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Tolerance and resistance - Stress tolerance	Os07g0569100	LOC_Os07g38170.1				GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0005886 - plasma membrane	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
19997	_		_				3	LOC_Os03g63870.	 Tolerance and resistance - Stress tolerance	Os03g0855700	LOC_Os03g63870.1, LOC_Os03g63870.2, LOC_Os03g63870.3				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19998	_		_				11	LOC_Os11g34790.	 Tolerance and resistance - Stress tolerance	Os11g0549665 	LOC_Os11g34790.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
19999	_		_				10	LOC_Os10g22630.	 Tolerance and resistance - Stress tolerance		LOC_Os10g22630				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20000	_		_				2	LOC_Os02g57924.	 Tolerance and resistance - Stress tolerance	Os02g0825650 	LOC_Os02g57924.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20001	_		_				3	LOC_Os03g18779.	 Tolerance and resistance - Stress tolerance	Os03g0299700 	LOC_Os03g18779.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20002	_		_				4	LOC_Os04g01330. WASH complex subunit CCDC53 homolog.	 Tolerance and resistance - Stress tolerance	Os04g0103800 	LOC_Os04g01330.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20003	_		_				7	Conserved hypothetical protein. a mRNA target of MSTRG.5751.1.	 Tolerance and resistance - Stress tolerance	Os07g0153150 	LOC_Os07g05840.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20004	_		_				10	LOC_Os10g24004.	 Tolerance and resistance - Stress tolerance	Os10g0381601 	LOC_Os10g24004.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20005	ROPGEF5	OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B, OsGEF19, GEF19	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 5	small GTPase Rac/ROP guanine nucleotide exchange factor 1, GEF for ROP 5, guanine nucleotide exchange factor for Rop 5, Rop-specific GEF5, Rop-specific guanine nucleotide exchange factor 5, Guanine Nucleotide Exchange Factor 7B, Guanine nucleotide exchange factor 19	ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 5	osropgef7b-1	1	RhoGEF family. PRONE domain containing protein. OsRopGEF7B in Huang et al. 2018. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait. TO:1000021: plant ovary morphology.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Disease resistance	Os01g0849100	LOC_Os01g62990.1				GO:0005089 - Rho guanyl-nucleotide exchange factor activity, GO:0048437 - floral organ development, GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum	TO:0000225 - stamen number, TO:0000112 - disease resistance, TO:0000650 - lemma length, TO:0006009 - lodicule anatomy and morphology trait, TO:0006038 - floral organ number, TO:0000180 - spikelet fertility	PO:0000229 - flower meristem , PO:0005029 - root primordium , PO:0000025 - root tip , PO:0009005 - root , PO:0025281 - pollen , PO:0009073 - stigma , PO:0009067 - filament , PO:0009066 - anther , PO:0020138 - leaf lamina vein , PO:0020121 - lateral root , PO:0025477 - floral organ primordium 
20006	_	SPIN6, Spin6, SIP11	_	SPL11-interacting Protein 6, SPL11-interacting protein6, SKIP interacting protein 11, SKIPa-interacting protein 11, SKIPa-interacting protein 11			7	LOC_Os07g46450. a Rho GTPase-activating protein (Rho-GAP). the target of the E3 ligase SPL11. Component involved in SPL11-mediated PCD and defense. GO:1900425: negative regulation of defense response to bacterium. GO:2000377: regulation of reactive oxygen species metabolic process. EU368701.	 Tolerance and resistance - Disease resistance	Os07g0658300	LOC_Os07g46450.1, LOC_Os07g46450.2, LOC_Os07g46450.3				GO:0050832 - defense response to fungus, GO:0043069 - negative regulation of programmed cell death, GO:0031348 - negative regulation of defense response, GO:0045824 - negative regulation of innate immune response, GO:0005096 - GTPase activator activity, GO:0007165 - signal transduction	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
20007	_	Spin6.3	_				3	LOC_Os03g11140. a PH/GAP-type SPIN6 homolog.		Os03g0209800	LOC_Os03g11140.1, LOC_Os03g11140.2, LOC_Os03g11140.3, LOC_Os03g11140.4				GO:0007165 - signal transduction, GO:0005096 - GTPase activator activity		
20008	_	Spin6.2	_				3	LOC_Os03g24180. a PH/GAP-type SPIN6 homolog.		Os03g0356638 	LOC_Os03g24180.1				GO:0005737 - cytoplasm, GO:0005096 - GTPase activator activity, GO:0043087 - regulation of GTPase activity, GO:0007165 - signal transduction		
20009	_	OsHUB1, HUB1	_	HISTONE MONOUBIQUITINATION1				the homologous protein of Arabidopsis RING finger E3 ligase HUB1.	 Tolerance and resistance - Disease resistance						GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0006952 - defense response, GO:0009751 - response to salicylic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000112 - disease resistance	
20010	_	OsHUB2, HUB2	_	HISTONE MONOUBIQUITINATION2				the homologous protein of Arabidopsis RING finger E3 ligase HUB2.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000112 - disease resistance	
20011	DIR3	OsDIR3, OsjDIR3	DIRIGENT 3	Dirigent, Dirigent domain-containing protein, Dirigent 3, DIR domain protein 3	DIRIGENT 3		1	a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os01g0352400 	LOC_Os01g25030.1				GO:0009610 - response to symbiotic fungus, GO:0016036 - cellular response to phosphate starvation, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0046686 - response to cadmium ion, GO:0042594 - response to starvation	TO:0000102 - phosphorus sensitivity	PO:0025025 - root system 
20012	_	OsPOP2, POP2	_	Prolyl Oligopeptidase 2, PROLYL OLIGOPEPTIDASE 2			1	LOC_Os01g42690. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os01g0612500	LOC_Os01g42690.1, LOC_Os01g42690.2				GO:0016787 - hydrolase activity		
20013	_	OsPOP3, POP3	_	Prolyl Oligopeptidase 3, PROLYL OLIGOPEPTIDASE 3			1	Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os01g0689800	LOC_Os01g49510.1				GO:0008233 - peptidase activity		
20014	_	OsPOP4, POP4	_	Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4			1	LOC_Os01g57770. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os01g0787600	LOC_Os01g57770.1						
20015	_	OsPOP7, POP7	_	Prolyl Oligopeptidase 7, PROLYL OLIGOPEPTIDASE 7			3	LOC_Os03g19410. Q10MJ1. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os03g0307100	LOC_Os03g19410.1				GO:0009570 - chloroplast stroma, GO:0008236 - serine-type peptidase activity		
20016	_	OsPOP8, POP8	_	Prolyl Oligopeptidase 8, PROLYL OLIGOPEPTIDASE 8			3	LOC_Os03g24450. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os03g0359000	LOC_Os03g24450.1						
20017	_	OsPOP9, POP9	_	Prolyl Oligopeptidase 9, PROLYL OLIGOPEPTIDASE 9			4	LOC_Os04g47360. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os04g0561500	LOC_Os04g47360.1				GO:0004252 - serine-type endopeptidase activity, GO:0070008 - serine-type exopeptidase activity		
20018	_	OsPOP10, POP10	_	Prolyl Oligopeptidase 10, PROLYL OLIGOPEPTIDASE 10			5	LOC_Os05g46210. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os05g0539500	LOC_Os05g46210.1						
20019	_	OsPOP11, POP11	_	Prolyl Oligopeptidase 11, PROLYL OLIGOPEPTIDASE 11			6	LOC_Os06g06770. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0163200	LOC_Os06g06770.1, LOC_Os06g06770.2				GO:0046482 - para-aminobenzoic acid metabolic process, GO:0010260 - organ senescence		
20020	_	OsPOP12, POP12	_	Prolyl Oligopeptidase 12, PROLYL OLIGOPEPTIDASE 12			6	LOC_Os06g11180. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0215300	LOC_Os06g11180.1				GO:0004177 - aminopeptidase activity, GO:0008236 - serine-type peptidase activity		
20021	_	OsPOP13, POP13	_	Prolyl Oligopeptidase 13, PROLYL OLIGOPEPTIDASE 13			6	LOC_Os06g11190. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0215400	LOC_Os06g11190.1				GO:0004177 - aminopeptidase activity, GO:0008236 - serine-type peptidase activity		
20022	_	OsPOP14, POP14	_	Prolyl Oligopeptidase 14, PROLYL OLIGOPEPTIDASE 14			6	LOC_Os06g42730. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0633900	LOC_Os06g42730.1				GO:0008233 - peptidase activity		
20023	_	OsPOP15, POP15	_	Prolyl Oligopeptidase 15, PROLYL OLIGOPEPTIDASE 15			6	LOC_Os06g51410. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os06g0730600	LOC_Os06g51410.1, LOC_Os06g51410.2				GO:0010048 - vernalization response, GO:0070008 - serine-type exopeptidase activity, GO:0004252 - serine-type endopeptidase activity, GO:0005829 - cytosol		
20024	_	OsPOP16, POP16	_	Prolyl Oligopeptidase 16, PROLYL OLIGOPEPTIDASE 16			7	LOC_Os07g41730. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os07g0608300	LOC_Os07g41730.1, LOC_Os07g41730.2				GO:0005886 - plasma membrane, GO:0019866 - organelle inner membrane, GO:0005783 - endoplasmic reticulum, GO:0048573 - photoperiodism, flowering, GO:0048364 - root development		
20025	_	OsPOP17, POP17	_	Prolyl Oligopeptidase 17, PROLYL OLIGOPEPTIDASE 17			7	LOC_Os07g48970. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os07g0689400	LOC_Os07g48970.1, LOC_Os07g48970.2						
20026	_	OsPOP18, POP18	_	Prolyl Oligopeptidase 18, PROLYL OLIGOPEPTIDASE 18			9	LOC_Os09g28040. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os09g0453700	LOC_Os09g28040.1				GO:0004252 - serine-type endopeptidase activity, GO:0016020 - membrane		
20027	_	OsPOP19, POP19	_	Prolyl Oligopeptidase 19, PROLYL OLIGOPEPTIDASE 19			9	LOC_Os09g29950. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os09g0475700	LOC_Os09g29950.1, LOC_Os09g29950.2, LOC_Os09g29950.3				GO:0004252 - serine-type endopeptidase activity, GO:0009507 - chloroplast, GO:0070008 - serine-type exopeptidase activity		
20028	_	OsPOP20, POP20	_	Prolyl Oligopeptidase 20, PROLYL OLIGOPEPTIDASE 20			10	LOC_Os10g04620. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os10g0135600	LOC_Os10g04620.1, LOC_Os10g04620.2				GO:0009506 - plasmodesma, GO:0016787 - hydrolase activity		
20029	_	OsPOP21, POP21	_	Prolyl Oligopeptidase 21, PROLYL OLIGOPEPTIDASE 21			10	LOC_Os10g28020. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os10g0415600	LOC_Os10g28020.1, LOC_Os10g28020.2, LOC_Os10g28020.3, LOC_Os10g28020.4				GO:0004252 - serine-type endopeptidase activity		
20030	_	OsPOP22, POP22	_	Prolyl Oligopeptidase 22, PROLYL OLIGOPEPTIDASE 22			10	LOC_Os10g28030. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os10g0415800	LOC_Os10g28030.1, LOC_Os10g28030.2				GO:0004252 - serine-type endopeptidase activity		
20031	_	OsPOP23, POP23	_	Prolyl Oligopeptidase 23, PROLYL OLIGOPEPTIDASE 23			12	LOC_Os12g18860. Prolyl Oligopeptidase family (Peptidase_S9; PF00326). http://rice.plantbiology.msu.edu/ca/gene_fams/27_75.shtml	 Biochemical character	Os12g0286600	LOC_Os12g18860.1						
20032	_	OsSBeL1, SBeL1, SBEL1	_	Serine Beta-Lactamase 1, SERINE BETA-LACTAMASE 1			6	LOC_Os06g48770. Serine Beta-Lactamase Family (Peptidase_S12; PF00144). http://rice.plantbiology.msu.edu/ca/gene_fams/27_77.shtml	 Biochemical character	Os06g0701300 	LOC_Os06g48770.1, LOC_Os06g48770.2						
20033	_	OsClp5, CLP5	_	Clp protease 5, CLP PROTEASE 5			3	LOC_Os03g22430. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os03g0344900	LOC_Os03g22430.1, LOC_Os03g22430.2				GO:0004252 - serine-type endopeptidase activity		
20034	CLP7	OsClp7, OsClpP2, ClpP2	CLP PROTEASE 7	Clp protease 7, Plastid caseinolytic protease P2			4	Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os04g0525600	LOC_Os04g44400.1				GO:0004252 - serine-type endopeptidase activity		
20035	AL3	OsClp8, CLP8, OsClpR1, ClpR1	ALBINO LETHAL 3	Clp protease 8, CLP PROTEASE 8, albino lethal 3, CLP PROTEASE PROTEOLYTIC SUBUNIT 1, Plastid caseinolytic protease R1	CLP PROTEASE 8	al3, osclpr1a, osclpr1b, osclpr1c	5	homologous to Arabidopsis ClpR1. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtmlGO:1900865: chloroplast RNA modification. PO:0030123: panicle inflorescence.	 Biochemical character,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os05g0592100	LOC_Os05g51450.1				GO:0004252 - serine-type endopeptidase activity, GO:0009534 - chloroplast thylakoid, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0009941 - chloroplast envelope	TO:0000293 - chlorophyll-a content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009005 - root 
20036	_	OsClp9, CLP9	_	Clp protease 9, CLP PROTEASE 9			6	LOC_Os06g04530. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os06g0136800	LOC_Os06g04530.1				GO:0010207 - photosystem II assembly, GO:0009902 - chloroplast relocation, GO:0004252 - serine-type endopeptidase activity, GO:0010287 - plastoglobule, GO:0042793 - transcription from plastid promoter, GO:0010027 - thylakoid membrane organization, GO:0006364 - rRNA processing, GO:0035304 - regulation of protein amino acid dephosphorylation, GO:0009534 - chloroplast thylakoid, GO:0009840 - chloroplastic endopeptidase Clp complex, GO:0009941 - chloroplast envelope, GO:0045893 - positive regulation of transcription, DNA-dependent		
20037	_	OsClp10, CLP10	_	Clp protease 10, CLP PROTEASE 10			6	LOC_Os06g39712. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character		LOC_Os06g39712				GO:0004252 - serine-type endopeptidase activity		
20038	_	OsClp12, CLP12	_	Clp protease 12, CLP PROTEASE 12			11	LOC_Os11g11210. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character	Os11g0219000	LOC_Os11g11210.1				GO:0009507 - chloroplast		
20039	_	OsClp13, CLP13	_	Clp protease 13, CLP PROTEASE 13			12	LOC_Os12g10590. Clp Protease Family (Peptidase_S14; PF00574). http://rice.plantbiology.msu.edu/ca/gene_fams/27_78.shtml	 Biochemical character		LOC_Os12g10590				GO:0004252 - serine-type endopeptidase activity		
20040	_	OsLonP1, LONP1	_	Lon protease 1, LON PROTEASE 1			3	LOC_Os03g19350. Lon Protease Pamily (Peptidase_S16; PF05362). http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml GO:0090296: regulation of mitochondrial DNA replication.	 Biochemical character	Os03g0306400	LOC_Os03g19350.1				GO:0004252 - serine-type endopeptidase activity, GO:0005524 - ATP binding, GO:0004176 - ATP-dependent peptidase activity, GO:0043565 - sequence-specific DNA binding, GO:0034599 - cellular response to oxidative stress, GO:0051131 - chaperone-mediated protein complex assembly, GO:0006515 - misfolded or incompletely synthesized protein catabolic process, GO:0070407 - oxidation-dependent protein catabolic process, GO:0005759 - mitochondrial matrix		
20041	_	OsLonP3, LONP3	_	Lon protease 3, LON PROTEASE 3			7	LOC_Os07g48960. Q69UZ3. Lon Protease Pamily (Peptidase_S16; PF05362). http://rice.plantbiology.msu.edu/ca/gene_fams/27_79.shtml GO:0090296: regulation of mitochondrial DNA replication	 Biochemical character	Os07g0689300	LOC_Os07g48960.1				GO:0007005 - mitochondrion organization, GO:0005737 - cytoplasm, GO:0003697 - single-stranded DNA binding, GO:0043565 - sequence-specific DNA binding, GO:0006515 - misfolded or incompletely synthesized protein catabolic process, GO:0051131 - chaperone-mediated protein complex assembly, GO:0005759 - mitochondrial matrix, GO:0005524 - ATP binding, GO:0004252 - serine-type endopeptidase activity, GO:0070407 - oxidation-dependent protein catabolic process, GO:0004176 - ATP-dependent peptidase activity, GO:0070361 - mitochondrial light strand promoter anti-sense binding, GO:0034599 - cellular response to oxidative stress		
20042	_	OsSigP1, SIGP1	_	Type I Signal Peptidase 1, TYPE I SIGNAL PEPTIDASE 1			2	LOC_Os02g58139. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os02g0827900	LOC_Os02g58139.1, LOC_Os02g58139.2, LOC_Os02g58139.3				GO:0016021 - integral to membrane, GO:0008233 - peptidase activity, GO:0006465 - signal peptide processing		
20043	_	OsSigP2, SIGP2	_	Type I Signal Peptidase 2, TYPE I SIGNAL PEPTIDASE 2			3	LOC_Os03g55640. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os03g0765200	LOC_Os03g55640.1, LOC_Os03g55640.2, LOC_Os03g55640.3, LOC_Os03g55640.4, LOC_Os03g55640.5				GO:0016021 - integral to membrane, GO:0008236 - serine-type peptidase activity		
20044	_	OsSigP3, SIGP3	_	Type I Signal Peptidase 3, TYPE I SIGNAL PEPTIDASE 3			4	LOC_Os04g08340. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os04g0165600	LOC_Os04g08340.1				GO:0016021 - integral to membrane, GO:0008236 - serine-type peptidase activity		
20045	_	OsSigP4, SIGP4	_	Type I Signal Peptidase 4, TYPE I SIGNAL PEPTIDASE 4			5	LOC_Os05g23260. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os05g0297900	LOC_Os05g23260.1				GO:0008233 - peptidase activity, GO:0006465 - signal peptide processing, GO:0016021 - integral to membrane		
20046	_	OsSigP5, SIGP5	_	Type I Signal Peptidase 5, TYPE I SIGNAL PEPTIDASE 5			6	LOC_Os06g16260. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os06g0273800	LOC_Os06g16260.1, LOC_Os06g16260.2				GO:0016021 - integral to membrane, GO:0006465 - signal peptide processing, GO:0008233 - peptidase activity		
20047	_	OsSigP6, SIGP6	_	Type I Signal Peptidase 6, TYPE I SIGNAL PEPTIDASE 6			9	LOC_Os09g28000. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os09g0453400	LOC_Os09g28000.1, LOC_Os09g28000.2				GO:0008236 - serine-type peptidase activity, GO:0016021 - integral to membrane		
20048	_	OsSigP7, SIGP7	_	Type I Signal Peptidase 7, TYPE I SIGNAL PEPTIDASE 7			11	LOC_Os11g40500. Signal Peptidase Family (Peptidase_S26; PF00717). http://rice.plantbiology.msu.edu/ca/gene_fams/27_80.shtml	 Biochemical character	Os11g0620000	LOC_Os11g40500.1, LOC_Os11g40500.2, LOC_Os11g40500.3				GO:0008236 - serine-type peptidase activity, GO:0005739 - mitochondrion, GO:0016020 - membrane		
20049	_	OsProCP1, PROCP1	_	Lysosomal Pro-x Carboxypeptidase 1, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 1			1	LOC_Os01g56150. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os01g0767100	LOC_Os01g56150.1				GO:0009507 - chloroplast, GO:0008236 - serine-type peptidase activity, GO:0004180 - carboxypeptidase activity, GO:0009086 - methionine biosynthetic process, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0005773 - vacuole		
20050	_	OsProCP2, PROCP2	_	Lysosomal Pro-x Carboxypeptidase 2, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 2			6	LOC_Os06g43930. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os06g0647400	LOC_Os06g43930.1, LOC_Os06g43930.2				GO:0004180 - carboxypeptidase activity, GO:0019761 - glucosinolate biosynthetic process, GO:0008236 - serine-type peptidase activity		
20051	_	OsProCP3, PROCP3	_	Lysosomal Pro-x Carboxypeptidase 3, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 3			10	LOC_Os10g36760. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os10g0511400	LOC_Os10g36760.1				GO:0008236 - serine-type peptidase activity, GO:0004180 - carboxypeptidase activity		
20052	_	OsProCP4, PROCP4	_	Lysosomal Pro-x Carboxypeptidase 4, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 4			10	LOC_Os10g36780. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os10g0511600	LOC_Os10g36780.1, LOC_Os10g36780.2, LOC_Os10g36780.3, LOC_Os10g36780.4				GO:0008236 - serine-type peptidase activity		
20053	_	OsProCP5, PROCP5	_	Lysosomal Pro-x Carboxypeptidase 5, LYSOSOMAL PRO-X CARBOXYPEPTIDASE 5			11	LOC_Os11g05760. Lysosomal Pro-x Carboxypeptidase Family (Peptidase_S28; PF05577). http://rice.plantbiology.msu.edu/ca/gene_fams/27_81.shtml	 Biochemical character	Os11g0156200	LOC_Os11g05760.1				GO:0008236 - serine-type peptidase activity, GO:0004180 - carboxypeptidase activity		
20054	_	OsCttP1, CTTP1	_	C-terminal processing peptidase 1, C-TERMINAL PROCESSING PEPTIDASE 1			1	LOC_Os01g47450. C-terminal Processing Peptidase Family (Peptidase_S41; PF03572). http://rice.plantbiology.msu.edu/ca/gene_fams/27_82.shtml	 Biochemical character	Os01g0664000	LOC_Os01g47450.1				GO:0016556 - mRNA modification, GO:0008236 - serine-type peptidase activity, GO:0031977 - thylakoid lumen		
20055	_	OsCttP2, CTTP2	_	C-terminal processing peptidase 2, C-TERMINAL PROCESSING PEPTIDASE 2			2	LOC_Os02g57060. C-terminal Processing Peptidase Family (Peptidase_S41; PF03572). http://rice.plantbiology.msu.edu/ca/gene_fams/27_82.shtml	 Biochemical character	Os02g0815700	LOC_Os02g57060.1						
20056	_	OsCttP3, CTTP3	_	C-terminal processing peptidase 3, C-TERMINAL PROCESSING PEPTIDASE 3			6	LOC_Os06g21380. C-terminal Processing Peptidase Family (Peptidase_S41; PF03572). http://rice.plantbiology.msu.edu/ca/gene_fams/27_82.shtml	 Biochemical character	Os06g0318600	LOC_Os06g21380.1				GO:0008236 - serine-type peptidase activity		
20057	_	OsProtIV1, PROTIV1	_	Protease IV 1, PROTEASE IV 1			2	LOC_Os02g49570. Protease IV Family (Peptidase_S49; PF01343). http://rice.plantbiology.msu.edu/ca/gene_fams/27_83.shtml	 Biochemical character	Os02g0728100 	LOC_Os02g49570.1				GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0009534 - chloroplast thylakoid, GO:0006465 - signal peptide processing, GO:0004252 - serine-type endopeptidase activity		
20058	_	OsRhmbd2, RHMBD2	_	Rhomboid 2, RHOMBOID 2			1	LOC_Os01g16330. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0268800	LOC_Os01g16330.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20059	_	OsRhmbd3, RHMBD3	_	Rhomboid 3, RHOMBOID 3			1	LOC_Os01g18100. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0283500	LOC_Os01g18100.1				GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane, GO:0004252 - serine-type endopeptidase activity		
20060	_	OsRhmbd4, RHMBD4	_	Rhomboid 4, RHOMBOID 4			1	LOC_Os01g55740. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0763100	LOC_Os01g55740.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20061	_	OsRhmbd5, RHMBD5	_	Rhomboid 5, RHOMBOID 5			1	LOC_Os01g67040. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os01g0895500	LOC_Os01g67040.1, LOC_Os01g67040.2				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20062	_	OsRhmbd6, RHMBD6	_	Rhomboid 6, RHOMBOID 6			2	LOC_Os02g22100. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os02g0326700	LOC_Os02g22100.1, LOC_Os02g22100.2, LOC_Os02g22100.3, LOC_Os02g22100.4, LOC_Os02g22100.5, LOC_Os02g22100.6, LOC_Os02g22100.7				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20063	_	OsRhmbd7, RHMBD7	_	Rhomboid 7, RHOMBOID 7			3	LOC_Os03g02530. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml. up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character	Os03g0116400	LOC_Os03g02530.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane, GO:0009790 - embryonic development		
20064	_	OsRhmbd8, RHMBD8	_	Rhomboid 8, RHOMBOID 8			3	LOC_Os03g24390. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os03g0358200	LOC_Os03g24390.1						
20065	_	OsRhmbd9, RHMBD9	_	Rhomboid 9, RHOMBOID 9			3	LOC_Os03g44830. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os03g0651100	LOC_Os03g44830.1, LOC_Os03g44830.2, LOC_Os03g44830.3				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20066	_	OsRhmbd10, RHMBD10	_	Rhomboid 10, RHOMBOID 10			4	LOC_Os04g01300. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os04g0103300	LOC_Os04g01300.1, LOC_Os04g01300.2, LOC_Os04g01300.3, LOC_Os04g01300.4				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20067	_	OsRhmbd11, RHMBD11	_	Rhomboid 11, RHOMBOID 11			4	LOC_Os04g48130. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os04g0569300	LOC_Os04g48130.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20068	_	OsRhmbd12, RHMBD12	_	Rhomboid 12, RHOMBOID 12			5	LOC_Os05g13370. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os05g0220600	LOC_Os05g13370.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane, GO:0080140 - regulation of jasmonic acid metabolic process, GO:0009706 - chloroplast inner membrane		
20069	_	OsRhmbd13, RHMBD13	_	Rhomboid 13, RHOMBOID 13			7	LOC_Os07g46170. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os07g0655400	LOC_Os07g46170.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20070	_	OsRhmbd14, RHMBD14	_	Rhomboid 14, RHOMBOID 14			8	LOC_Os08g43320. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os08g0546700	LOC_Os08g43320.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20071	_	OsRhmbd15, RHMBD15	_	Rhomboid 15, RHOMBOID 15			9	LOC_Os09g28100. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os09g0454100	LOC_Os09g28100.1				GO:0031969 - chloroplast membrane, GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20072	_	OsRhmbd16, RHMBD16	_	Rhomboid 16, RHOMBOID 16			9	LOC_Os09g35730. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os09g0525900	LOC_Os09g35730.1				GO:0016021 - integral to membrane, GO:0004252 - serine-type endopeptidase activity		
20073	_	OsRhmbd17, RHMBD17	_	Rhomboid 17, RHOMBOID 17			10	LOC_Os10g37760. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os10g0521900	LOC_Os10g37760.1, LOC_Os10g37760.2				GO:0016021 - integral to membrane, GO:0016485 - protein processing, GO:0004252 - serine-type endopeptidase activity		
20074	_	OsRhmbd18, RHMBD18	_	Rhomboid 18, RHOMBOID 18			11	LOC_Os11g47840. Rhomboid Protease Family (Peptidase_S54; PF01694). http://rice.plantbiology.msu.edu/ca/gene_fams/27_84.shtml	 Biochemical character	Os11g0704800	LOC_Os11g47840.1				GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane		
20075	_	OsNucAP2, NUCAP2	_	Nucleoporin Autopeptidase 2, NUCLEOPORIN AUTOPEPTIDASE 2			12	LOC_Os12g06870. Nucleoporin Autopeptidase Family (Peptidase_S59; PF04096). http://rice.plantbiology.msu.edu/ca/gene_fams/27_85.shtmlthe homologue of APIP12. the true orthologue of Nup98 in rice.	 Biochemical character	Os12g0165900	LOC_Os12g06870.1				GO:0006810 - transport, GO:0005643 - nuclear pore		
20076	_	OsNucAP3, NUCAP3	_	Nucleoporin Autopeptidase 3, NUCLEOPORIN AUTOPEPTIDASE 3			12	LOC_Os12g06890. Nucleoporin Autopeptidase Family (Peptidase_S59; PF04096). http://rice.plantbiology.msu.edu/ca/gene_fams/27_85.shtmlthe homologues of APIP12. the true orthologue of Nup98 in rice.	 Biochemical character	Os12g0166000	LOC_Os12g06890.1				GO:0006810 - transport, GO:0005643 - nuclear pore		
20077	_	OsDegp1, DEGP1, OsDeg-like 1	_	Deg protease 1, DEG PROTEASE 1			1	LOC_Os01g17070. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os01g0278600	LOC_Os01g17070.1, LOC_Os01g17070.2						
20078	_	OsDegp2, DEGP2, OsDeg7	_	Deg protease 2, DEG PROTEASE 2			2	LOC_Os02g48180. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os02g0712000					GO:0008233 - peptidase activity		
20079	_	OsDegp3, DEGP3, OsDeg9.1	_	Deg protease 3, DEG PROTEASE 3, Protease Do-like 9			2	LOC_Os02g50880. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml  This is one of the three genes within the candidate gene region on chromosome 2 for root growth QTLs which are upregulated in Azucena compared to Bala. OsDeg9.1 in Schuhmann et al. 2012.	 Biochemical character	Os02g0742500	LOC_Os02g50880.1				GO:0004252 - serine-type endopeptidase activity		
20080	_	OsDegp4, DEGP4, OsDeg-like 6	_	Deg protease 4, DEG PROTEASE 4			3	LOC_Os03g62900. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character		LOC_Os03g62900						
20081	_	OsDegp5, DEGP5, OsDeg8	_	Deg protease 5, DEG PROTEASE 5			4	LOC_Os04g38640. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg8 in Schuhmann et al. 2012.	 Biochemical character	Os04g0459900	LOC_Os04g38640.1, LOC_Os04g38640.2, LOC_Os04g38640.3				GO:0010027 - thylakoid membrane organization, GO:0019252 - starch biosynthetic process, GO:0019761 - glucosinolate biosynthetic process, GO:0010206 - photosystem II repair, GO:0009534 - chloroplast thylakoid, GO:0004252 - serine-type endopeptidase activity, GO:0031977 - thylakoid lumen, GO:0000023 - maltose metabolic process		
20082	_	OsDegp6, DEGP6, OsDeg2	_	Deg protease 6, DEG PROTEASE 6			5	LOC_Os05g05480. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg2 in Schuhmann et al. 2012.	 Biochemical character	Os05g0147500	LOC_Os05g05480.1, LOC_Os05g05480.2				GO:0004252 - serine-type endopeptidase activity		
20083	TCM5	OsDegp7, DEGP7, OsDeg10, DEPG10, OsDEPG10	THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 5	Deg protease 7, DEG PROTEASE 7, thermo-sensitive chlorophyll-deficient mutant 5		tcm5	5	Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg10 in Schuhmann et al. 2012. DEPG10 in Um et al. 2022.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll	Os05g0417100	LOC_Os05g34460.1				GO:0004252 - serine-type endopeptidase activity, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0042548 - regulation of photosynthesis, light reaction	TO:0000326 - leaf color, TO:0000276 - drought tolerance, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000259 - heat tolerance	
20084	_	OsDegp8, DEGP8, OsDeg15	_	Deg protease 8, DEG PROTEASE 8			5	LOC_Os05g41810. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg15 in Schuhmann et al. 2012.	 Biochemical character	Os05g0497700	LOC_Os05g41810.1, LOC_Os05g41810.2						
20085	_	OsDegp9, DEGP9, OsDeg1	_	Deg protease 9, DEG PROTEASE 9			5	LOC_Os05g49380. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg1 in Schuhmann et al. 2012.	 Biochemical character	Os05g0568900	LOC_Os05g49380.1, LOC_Os05g49380.2				GO:0004252 - serine-type endopeptidase activity, GO:0019761 - glucosinolate biosynthetic process, GO:0031977 - thylakoid lumen, GO:0015996 - chlorophyll catabolic process, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0010206 - photosystem II repair, GO:0009534 - chloroplast thylakoid, GO:0006098 - pentose-phosphate shunt, GO:0005634 - nucleus		
20086	_	OsDegp10, DEGP10, OsDeg9.2	_	Deg protease 10, DEG PROTEASE 10			6	LOC_Os06g12780. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg9.2 in Schuhmann et al. 2012.	 Biochemical character	Os06g0234100	LOC_Os06g12780.1				GO:0004252 - serine-type endopeptidase activity		
20087	_	OsDegp11, DEGP11, OsDeg-like 2	_	Deg protease 11, DEG PROTEASE 11			8	LOC_Os08g04920. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os08g0144400	LOC_Os08g04920.1, LOC_Os08g04920.2, LOC_Os08g04920.3, LOC_Os08g04920.4, LOC_Os08g04920.5, LOC_Os08g04920.6, LOC_Os08g04920.7, LOC_Os08g04920.8						
20088	_	OsDegp12, DEGP12, OsDeg14	_	Deg protease 12, DEG PROTEASE 12			11	LOC_Os11g14170. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg14 in Schuhmann et al. 2012.	 Biochemical character	Os11g0246600	LOC_Os11g14170.1				GO:0004252 - serine-type endopeptidase activity		
20089	_	OsDegp13, DEGP13, OsDeg-like 3	_	Deg protease 13, DEG PROTEASE 13			12	LOC_Os12g04740. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os12g0141500	LOC_Os12g04740.1, LOC_Os12g04740.2, LOC_Os12g04740.3						
20090	_	OsDegp14, DEGP14, OsDeg-like 4	_	Deg protease 14, DEG PROTEASE 14			12	LOC_Os12g04750. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml	 Biochemical character	Os12g0141600	LOC_Os12g04750.1						
20091	_	OsDegp15, DEGP15, OsDeg5	_	Deg protease 15, DEG PROTEASE 15			12	LOC_Os12g42210. Trypsin Family (Peptidase_S1; PF00089). http://rice.plantbiology.msu.edu/ca/gene_fams/27_86.shtml. OsDeg5 in Schuhmann et al. 2012.	 Biochemical character	Os12g0616600	LOC_Os12g42210.1				GO:0004252 - serine-type endopeptidase activity		
20092	SUB48	OsSub48	SUBTILISIN 48	Subtilisin 48	SUBTILISIN 48		6	Chr6:3203764..3211338. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character		LOC_Os06g06802.1						
20093	SUB1	OsSub1, OsDHHC01, DHHC01, OsDHHC1, DHHC1	SUBTILISIN 1	Subtilisin 1, DHHC domain protein 1	SUBTILISIN 1		1	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0279000	LOC_Os01g17160.1				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0006612 - protein targeting to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0008270 - zinc ion binding, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum		
20094	SUB2	OsSub2, SLP1, OsSLP1	SUBTILISIN 2	Subtilisin 2, SUBTILISIN-LIKE PROTEASE 1	SUBTILISIN 2		1	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0702300	LOC_Os01g50680.1				GO:0005618 - cell wall, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20095	SUB3	OsSub3	SUBTILISIN 3	Subtilisin 3	SUBTILISIN 3		1	CT834990. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0727800/Os01g0727840	LOC_Os01g52750.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20096	SUB4	OsSub4	SUBTILISIN 4	Subtilisin 4	SUBTILISIN 4		1	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0769200	LOC_Os01g56320.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20097	SUB7	OsSub7	SUBTILISIN 7	Subtilisin 7	SUBTILISIN 7		1	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0795100	LOC_Os01g58270.1				GO:0004252 - serine-type endopeptidase activity, GO:0005615 - extracellular space, GO:0006508 - proteolysis, GO:0005618 - cell wall		PO:0009006 - shoot system 
20098	SUB8	OsSub8	SUBTILISIN 8	Subtilisin 8	SUBTILISIN 8		1	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0795200	LOC_Os01g58280.1				GO:0005618 - cell wall, GO:0006508 - proteolysis, GO:0005615 - extracellular space, GO:0004252 - serine-type endopeptidase activity		
20099	SUB10	OsSub10	SUBTILISIN 10	Subtilisin 10	SUBTILISIN 10		1	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0868800	LOC_Os01g64850.1				GO:0006508 - proteolysis, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20100	SUB11	OsSub11	SUBTILISIN 11	Subtilisin 11	SUBTILISIN 11		1	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os01g0868900	LOC_Os01g64860.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0005618 - cell wall		
20101	SUB12	OsSub12	SUBTILISIN 12	Subtilisin 12	SUBTILISIN 12		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0198700	LOC_Os02g10520.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20102	SUB13	OsSub13	SUBTILISIN 13	Subtilisin 13	SUBTILISIN 13		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0269600	LOC_Os02g16940.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		PO:0009006 - shoot system 
20103	SUB14	OsSub14	SUBTILISIN 14	Subtilisin 14	SUBTILISIN 14		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0270200	LOC_Os02g17000.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		PO:0009006 - shoot system 
20104	SUB15	OsSub15	SUBTILISIN 15	Subtilisin 15			2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0270800	LOC_Os02g17060.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		PO:0009006 - shoot system 
20105	SUB16	OsSub16	SUBTILISIN 16	Subtilisin 16	SUBTILISIN 16		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0270900	LOC_Os02g17080.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		PO:0009006 - shoot system 
20106	SUB17	OsSub17	SUBTILISIN 17	Subtilisin 17	SUBTILISIN 17		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0271000	LOC_Os02g17090.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		PO:0009006 - shoot system 
20107	SUB18	OsSub18	SUBTILISIN 18	Subtilisin 18	SUBTILISIN 18		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0271600	LOC_Os02g17150.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20108	SUB19	OsSub19	SUBTILISIN 19	Subtilisin 19	SUBTILISIN 19		2	Q6ESI7. Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0664300	LOC_Os02g44520.1				GO:0006508 - proteolysis, GO:0008240 - tripeptidyl-peptidase activity, GO:0004177 - aminopeptidase activity, GO:0004252 - serine-type endopeptidase activity, GO:0009630 - gravitropism, GO:0009507 - chloroplast, GO:0022626 - cytosolic ribosome, GO:0005774 - vacuolar membrane, GO:0005829 - cytosol, GO:0003729 - mRNA binding		
20109	SUB21	OsSub21	SUBTILISIN 21	Subtilisin 21	SUBTILISIN 21		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0779000	LOC_Os02g53850.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		PO:0025034 - leaf 
20110	SUB22	OsSub22, OsSASP, SASP	SUBTILISIN 22	Subtilisin 22, Senescence-Associated Subtilisin Protease	SUBTILISIN 22		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml. the rice orthologue of AtSASP. 	 Reproductive organ - Inflorescence,  Biochemical character	Os02g0779200	LOC_Os02g53860.1				GO:0005774 - vacuolar membrane, GO:0015996 - chlorophyll catabolic process, GO:0009505 - plant-type cell wall, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0048046 - apoplast	TO:0000050 - inflorescence branching	
20111	SUB23	OsSub23	SUBTILISIN 23	Subtilisin 23	SUBTILISIN 23		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0779900	LOC_Os02g53910.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20112	SUB24	OsSub24	SUBTILISIN 24	Subtilisin 24	SUBTILISIN 24		2	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os02g0780200	LOC_Os02g53970.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20113	SUB25	OsSub25	SUBTILISIN 25	Subtilisin 25	SUBTILISIN 25		3	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0119300	LOC_Os03g02750.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20114	SUB27	OsSub27	SUBTILISIN 27	Subtilisin 27			3	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0158700	LOC_Os03g06290.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0005618 - cell wall		
20115	SUB28	OsSub28	SUBTILISIN 28	Subtilisin 28	SUBTILISIN 28		3	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0242900	LOC_Os03g13930.1				GO:0000272 - polysaccharide catabolic process, GO:0019761 - glucosinolate biosynthetic process, GO:0007020 - microtubule nucleation, GO:0006508 - proteolysis, GO:0000096 - sulfur amino acid metabolic process, GO:0005982 - starch metabolic process, GO:0009069 - serine family amino acid metabolic process, GO:0010075 - regulation of meristem growth, GO:0008652 - cellular amino acid biosynthetic process, GO:0009827 - plant-type cell wall modification, GO:0009832 - plant-type cell wall biogenesis, GO:0004252 - serine-type endopeptidase activity, GO:0016020 - membrane		
20116	SUB29	OsSub29	SUBTILISIN 29	Subtilisin 29	SUBTILISIN 29		3	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Seed,  Biochemical character	Os03g0430500	LOC_Os03g31630.1				GO:0048316 - seed development, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
20117	SUB31	OsSub31	SUBTILISIN 31	Subtilisin 31	SUBTILISIN 31		3	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os03g0761500	LOC_Os03g55350.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20118	SUB32	OsSub32	SUBTILISIN 32	Subtilisin 32	SUBTILISIN 32		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character		LOC_Os04g02960.1				GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20119	SUB33	OsSub33	SUBTILISIN 33	Subtilisin 33	SUBTILISIN 33		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0120300	LOC_Os04g02980.1, LOC_Os04g02990.1				GO:0004252 - serine-type endopeptidase activity, GO:0010269 - response to selenium ion, GO:0005618 - cell wall, GO:0006508 - proteolysis	TO:0000032 - selenium sensitivity	
20120	SUB34	OsSub34	SUBTILISIN 34	Subtilisin 34			4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0121100	LOC_Os04g03050.1				GO:0009651 - response to salt stress, GO:0005618 - cell wall, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity	TO:0006001 - salt tolerance	
20121	SUB35	OsSub35	SUBTILISIN 35	Subtilisin 35	SUBTILISIN 35		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0121300	LOC_Os04g03100.1				GO:0006508 - proteolysis, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20122	SUB36	OsSub36	SUBTILISIN 36	Subtilisin 36	SUBTILISIN 36		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0125975/Os04g0126150/Os04g0126325	LOC_Os04g03710.1						
20123	SUB37	OsSub37	SUBTILISIN 37	Subtilisin 37	SUBTILISIN 37		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0127100/Os04g0127200	LOC_Os04g03796.1, LOC_Os04g03796.2, LOC_Os04g03796.3, LOC_Os04g03796.4				GO:0006508 - proteolysis, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20124	SUB38	OsSub38	SUBTILISIN 38	Subtilisin 38	SUBTILISIN 38		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0127300	LOC_Os04g03810.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20125	SUB39	OsSub39	SUBTILISIN 39	Subtilisin 39	SUBTILISIN 39		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0127600	LOC_Os04g03850.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20126	SUB40	OsSub40	SUBTILISIN 40	Subtilisin 40	SUBTILISIN 40		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0182300	LOC_Os04g10360.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20127	SUB41	OsSub41	SUBTILISIN 41	Subtilisin 41	SUBTILISIN 41		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0430700	LOC_Os04g35140.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20128	SUB43	OsSub43	SUBTILISIN 43	Subtilisin 43	SUBTILISIN 43		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0558900	LOC_Os04g47150.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20129	SUB44	OsSub44	SUBTILISIN 44	Subtilisin 44	SUBTILISIN 44		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0559000	LOC_Os04g47160.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20130	SUB45	OsSub45	SUBTILISIN 45	Subtilisin 45	SUBTILISIN 45		4	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os04g0573300	LOC_Os04g48416.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20131	SUB46	OsSub46	SUBTILISIN 46	Subtilisin 46	SUBTILISIN 46		5	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os05g0368700	LOC_Os05g30580.1				GO:0006508 - proteolysis, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20132	SUB47	OsSub47	SUBTILISIN 47	Subtilisin 47	SUBTILISIN 47		5	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os05g0435800	LOC_Os05g36010.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20133	SUB49	OsSub49	SUBTILISIN 49	Subtilisin 49	SUBTILISIN 49		6	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0163500	LOC_Os06g06810.1				GO:0005794 - Golgi apparatus, GO:0004252 - serine-type endopeptidase activity, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0042538 - hyperosmotic salinity response, GO:0006486 - protein amino acid glycosylation, GO:0006508 - proteolysis, GO:0016021 - integral to membrane		
20134	SUB50	OsSub50	SUBTILISIN 50	Subtilisin 50	SUBTILISIN 50		6	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0609301/Os06g0609400	LOC_Os06g40700.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20135	SUB51	OsSub51	SUBTILISIN 51	Subtilisin 51	SUBTILISIN 51		6	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0624100	LOC_Os06g41880.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20136	SUB52	OsSub52	SUBTILISIN 52	Subtilisin 52	SUBTILISIN 52		6	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os06g0700000	LOC_Os06g48650.3, LOC_Os06g48650.1, LOC_Os06g48650.2				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis, GO:0016020 - membrane, GO:0005618 - cell wall		
20137	SUB53	OsSub53	SUBTILISIN 53	Subtilisin 53	SUBTILISIN 53		7	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml.  orthologous genes: O. brachyantha (Ob07G25630), O. punctata (Op07G18770), O. rufipogon (Or07G20610), O. nivara (On07G26510), O. glaberrima (Og07G0255300).	 Seed,  Biochemical character	Os07g0578300	LOC_Os07g39020.1				GO:0048229 - gametophyte development, GO:0009554 - megasporogenesis, GO:0004252 - serine-type endopeptidase activity, GO:0048316 - seed development, GO:0006508 - proteolysis	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed , PO:0028003 - gametophyte development stage , PO:0020003 - plant ovule 
20138	SUB54	OsSub54	SUBTILISIN 54	Subtilisin 54	SUBTILISIN 54		7	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os07g0685900	LOC_Os07g48650.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20139	SUB55	OsSub55	SUBTILISIN 55	Subtilisin 55	SUBTILISIN 55		8	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os08g0326700	LOC_Os08g23740.1				GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20140	SUB56	OsSub56, OsRING474, RING474	SUBTILISIN 56	Subtilisin 56, RING-type E3 ubiquitin ligase 474	SUBTILISIN 56		8	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os08g0452100	LOC_Os08g35070.1, LOC_Os08g35090.1				GO:0005773 - vacuole, GO:0046872 - metal ion binding, GO:0016740 - transferase activity, GO:0006508 - proteolysis, GO:0016485 - protein processing, GO:0004252 - serine-type endopeptidase activity, GO:0015031 - protein transport, GO:0044260 - cellular macromolecule metabolic process, GO:0016021 - integral to membrane, GO:0016020 - membrane		
20141	SUB57	OsSub57	SUBTILISIN 57	Subtilisin 57	SUBTILISIN 57		9	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os09g0441000	LOC_Os09g26920.1				GO:0005618 - cell wall, GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity		
20142	SUB58	OsSub58	SUBTILISIN 58	Subtilisin 58	SUBTILISIN 58		9	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character,  Seed	Os09g0479900	LOC_Os09g30250.1				GO:0048316 - seed development, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
20143	SUB59	OsSub59	SUBTILISIN 59	Subtilisin 59	SUBTILISIN 59		9	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os09g0530800	LOC_Os09g36110.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20144	SUB60	OsSub60	SUBTILISIN 60	Subtilisin 60	SUBTILISIN 60		10	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os10g0394200	LOC_Os10g25450.1				GO:0006508 - proteolysis, GO:0005618 - cell wall, GO:0004252 - serine-type endopeptidase activity		
20145	SUB61	OsSub61	SUBTILISIN 61	Subtilisin 61	SUBTILISIN 61		10	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os10g0524600	LOC_Os10g38080.1				GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis		
20146	SUB62	OsSub62	SUBTILISIN 62	Subtilisin 62	SUBTILISIN 62		11	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Biochemical character	Os11g0261600	LOC_Os11g15520.1				GO:0006508 - proteolysis, GO:0004252 - serine-type endopeptidase activity, GO:0005618 - cell wall		
20147	SUB63	OsSub63	SUBTILISIN 63	Subtilisin 63	SUBTILISIN 63		12	Subtilisin Family (Peptidase_S8; PF00082). http://rice.plantbiology.msu.edu/ca/gene_fams/27_87.shtml	 Seed,  Biochemical character	Os12g0427600	LOC_Os12g23980.1				GO:0048316 - seed development, GO:0004252 - serine-type endopeptidase activity, GO:0006508 - proteolysis	TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
20148	_	OsGUT1, GUT1	_	glucuronyltransferase 1			10	AB080694. Q33AH8. GO:0071555: cell wall organization.	 Biochemical character	Os10g0180000	LOC_Os10g10080.1, LOC_Os10g10080.2, LOC_Os10g10080.3				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0000139 - Golgi membrane		
20149	_	cp rpl13, cp RPL13, WLP1, RPL13	_	chloroplast ribosomal protein L13, chloroplast RPL13, white leaf and panicle one, white leaf and panicle 1, white leaf and panicles 1		wlp1	1		 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0749200	LOC_Os01g54540.1, LOC_Os01g54540.2				GO:0006412 - translation, GO:0009579 - thylakoid, GO:0003735 - structural constituent of ribosome, GO:0009941 - chloroplast envelope, GO:0045036 - protein targeting to chloroplast, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0005840 - ribosome, GO:0009570 - chloroplast stroma	TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	PO:0025034 - leaf 
20150	_	orf160, ORF160	_				5			Os05g0243200	LOC_Os05g15360.1, LOC_Os05g15360.2, LOC_Os05g15360.3, LOC_Os05g15360.4, LOC_Os05g15360.5, LOC_Os05g15360.6, LOC_Os05g15360.7				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome		
20151	_	ppr564, PPR564	_	pentatricopeptide repeat 564			1	AB244817.		Os01g0897500	LOC_Os01g67210.1						
20152	_		_	Trans-2-enoyl-CoA reductase			11	LOC_Os11g01154.	 Biochemical character	Os11g0102500 	LOC_Os11g01154.1, LOC_Os11g01154.4				GO:0016491 - oxidoreductase activity, GO:0008270 - zinc ion binding		
20153	_		_	Trans-2-enoyl-CoA reductase			12	LOC_Os12g01160.	 Biochemical character	Os12g0102100 	LOC_Os12g01160.1				GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0008270 - zinc ion binding, GO:0016491 - oxidoreductase activity, GO:0005524 - ATP binding, GO:0005507 - copper ion binding		
20154	CHC1	OsCHC1	CLATHRIN HEAVY CHAIN 1	Clathrin heavy chain, heavy chain of clathrin	CLATHRIN HEAVY CHAIN 1		11	Q2RBN7. GO:0071439: clathrin complex.	 Tolerance and resistance - Disease resistance	Os11g0104900	LOC_Os11g01380.1				GO:0030132 - clathrin coat of coated pit, GO:0006886 - intracellular protein transport, GO:0005198 - structural molecule activity, GO:0030130 - clathrin coat of trans-Golgi network vesicle, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0006898 - receptor-mediated endocytosis, GO:0032051 - clathrin light chain binding, GO:0016192 - vesicle-mediated transport	TO:0000074 - blast disease, TO:0000112 - disease resistance	
20155	_		_	Clathrin heavy chain binding			12	Q2QYW2.	 Vegetative organ - Leaf	Os12g0104800/Os12g0104766	LOC_Os12g01390.1				GO:0005198 - structural molecule activity, GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport, GO:0030130 - clathrin coat of trans-Golgi network vesicle, GO:0030132 - clathrin coat of coated pit	TO:0002681 - leaf curling	
20156	_	RPL9, OsRPL9	_	mRNA turnover protein 4, ribosomal protein L9			11	LOC_Os11g01420.	 Other,  Tolerance and resistance - Disease resistance	Os11g0105400	LOC_Os11g01420.1				GO:0042254 - ribosome biogenesis, GO:0006364 - rRNA processing, GO:0042742 - defense response to bacterium, GO:0000027 - ribosomal large subunit assembly, GO:0000956 - nuclear-transcribed mRNA catabolic process, GO:0005730 - nucleolus, GO:0005840 - ribosome	TO:0000175 - bacterial blight disease resistance	
20157	_		_	mRNA turnover protein 4			12	LOC_Os12g01430.		Os12g0105200 	LOC_Os12g01430.1, LOC_Os12g01430.2				GO:0042254 - ribosome biogenesis, GO:0005840 - ribosome		
20158	_		_	Ethanolamine-phosphate cytidylyltransferase			11	LOC_Os11g03050.	 Biochemical character	Os11g0123400	LOC_Os11g03050.1				GO:0003824 - catalytic activity, GO:0009058 - biosynthetic process		
20159	_		_	Ethanolamine-phosphate cytidylyltransferase			12	LOC_Os12g02820.	 Biochemical character	Os12g0121300 	LOC_Os12g02820.1				GO:0009058 - biosynthetic process, GO:0016779 - nucleotidyltransferase activity		
20160	_		_	M-phase phosphoprotein 10			11	LOC_Os11g04200.		Os11g0137100 	LOC_Os11g04200.1				GO:0034457 - Mpp10 complex, GO:0032040 - small-subunit processome		
20161	_		_	M-phase phosphoprotein 10			12	LOC_Os12g04010.		Os12g0133900 	LOC_Os12g04010.1				GO:0034457 - Mpp10 complex, GO:0006364 - rRNA processing, GO:0005732 - small nucleolar ribonucleoprotein complex		
20162	_		_	"\"L-Galactono, 4-lactone dehydrogenase\""			11	LOC_Os11g04740. Q2RAP0.	 Biochemical character	Os11g0143500 	LOC_Os11g04740.1				GO:0003885 - D-arabinono-1,4-lactone oxidase activity, GO:0050660 - FAD binding, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0031966 - mitochondrial membrane, GO:0016633 - galactonolactone dehydrogenase activity, GO:0016021 - integral to membrane		
20163	_		_	"\"L-Galactono, 4-lactone dehydrogenase\""			12	LOC_Os12g04520. Q2QXY1.	 Biochemical character	Os12g0139600	LOC_Os12g04520.1				GO:0003885 - D-arabinono-1,4-lactone oxidase activity, GO:0016633 - galactonolactone dehydrogenase activity, GO:0019853 - L-ascorbic acid biosynthetic process, GO:0031966 - mitochondrial membrane, GO:0050660 - FAD binding, GO:0016021 - integral to membrane		
20164	LACS2	OsLACS2, OsLACS6, LACS6	LONG-CHAIN ACYL-COA SYNTHASE 2	long-chain acyl-CoA synthase 2, Long-Chain Acyl-CoA Synthetase 6	LONG-CHAIN ACYL-COA SYNTHASE 2		11	AMP-binding enzyme family. OsLACS6 in  in Kitajima-Koga et al. 2020. 	 Biochemical character	Os11g0147000 	LOC_Os11g04980.2, LOC_Os11g04980.1				GO:0003824 - catalytic activity		
20165	ALDH5F1	OsALDH5F1, SSADH	ALDEHYDE DEHYDROGENASE 5F1	succinic semialdehyde dehydrogenase, aldehyde dehydrogenase 5F1	ALDEHYDE DEHYDROGENASE 5F1		2	LOC_Os02g07760. CU606989. B9F3B6. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character	Os02g0173900	LOC_Os02g07760.1, LOC_Os02g07760.2				GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity, GO:0009408 - response to heat, GO:0005759 - mitochondrial matrix, GO:0051287 - NAD or NADH binding, GO:0005507 - copper ion binding, GO:0006333 - chromatin assembly or disassembly, GO:0006540 - glutamate decarboxylation to succinate, GO:0004777 - succinate-semialdehyde dehydrogenase activity, GO:0009416 - response to light stimulus, GO:0009450 - gamma-aminobutyric acid catabolic process, GO:0009570 - chloroplast stroma		
20166	ALDH2B2	OsALDH2B2	ALDEHYDE DEHYDROGENASE 2B2	aldehyde dehydrogenase, Aldehyde dehydrogenase 2B2	ALDEHYDE DEHYDROGENASE 2B2		6	LOC_Os06g39230. CU607043. 	 Biochemical character	Os06g0592400	LOC_Os06g39230.1				GO:0005829 - cytosol, GO:0004029 - aldehyde dehydrogenase (NAD) activity		
20167	LRK2	OsLRK2, OsPSKR8, PSKR8	LEUCINE-RICH RECEPTOR-LIKE KINASE 2	leucine-rich receptor-like kinase 2, Phytosulfokine Receptor 8	LEUCINE-RICH RECEPTOR-LIKE KINASE 2		2	DQ195081 (ABA41559.1). AY756174  (AAV33324.1, Oryza rufipogon). LRK2 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1. GO:2000070: regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance,  Seed,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Vegetative organ - Root	Os02g0154000	LOC_Os02g05970.1				GO:0048316 - seed development, GO:0004672 - protein kinase activity, GO:0048527 - lateral root development, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0001013 - lateral root number, TO:0000440 - grain number per plant, TO:0000447 - filled grain number, TO:0000203 - bacterial leaf streak disease resistance, TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0009009 - plant embryo , PO:0009005 - root , PO:0001170 - seed development stage , PO:0009066 - anther , PO:0000055 - bud , PO:0005004 - shoot node , PO:0025034 - leaf 
20168	LRK3	OsLRK3, OsPSKR7, PSKR7	LEUCINE-RICH RECEPTOR-LIKE KINASE 3	leucine-rich receptor-like kinase 3, Phytosulfokine Receptor 7	LEUCINE-RICH RECEPTOR-LIKE KINASE 3		2	DQ195081 (ABA41560.1). AY756174  (AAV33325.1, Oryza rufipogon). LRK3 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.	 Seed,  Tolerance and resistance - Stress tolerance	Os02g0153900	LOC_Os02g05960.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0009651 - response to salt stress, GO:0009408 - response to heat	TO:0000276 - drought tolerance, TO:0000653 - seed development trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0009005 - root , PO:0009009 - plant embryo , PO:0001170 - seed development stage 
20169	LRK4	OsLRK4, OsPSKR6, PSKR6	LEUCINE-RICH RECEPTOR-LIKE KINASE 4	leucine-rich receptor-like kinase 4, Phytosulfokine Receptor 6	LEUCINE-RICH RECEPTOR-LIKE KINASE 4		2	DQ195081 (ABA41561.1). AY756174  (AAV33326.1, Oryza rufipogon). LRK4 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.	 Seed,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0153700	LOC_Os02g05950.1				GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0050832 - defense response to fungus	TO:0000203 - bacterial leaf streak disease resistance, TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0000259 - heat tolerance	PO:0001170 - seed development stage , PO:0009009 - plant embryo , PO:0009005 - root 
20170	LRK5	OsLRK5, OsPSKR5, PSKR5	LEUCINE-RICH RECEPTOR-LIKE KINASE 5	leucine-rich receptor-like kinase 5, Phytosulfokine Receptor 5	LEUCINE-RICH RECEPTOR-LIKE KINASE 5		2	DQ195081 (ABA41562.1). AY756174  (AAV33327.1, Oryza rufipogon). LRK5 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0153500	LOC_Os02g05940.1				GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance, TO:0000074 - blast disease	PO:0009005 - root 
20171	LRK7	OsLRK7, OsPSKR3, PSKR3	LEUCINE-RICH RECEPTOR-LIKE KINASE 7	leucine-rich receptor-like kinase 7, Phytosulfokine Receptor 3	LEUCINE-RICH RECEPTOR-LIKE KINASE 7		2	DQ195081 (ABA41564.1). AY756174  (AAV33329.1, Oryza rufipogon). LRK7 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1. PO:0030123: panicle inflorescence.	 Seed	Os02g0153200	LOC_Os02g05920.1				GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000653 - seed development trait	PO:0009009 - plant embryo , PO:0001170 - seed development stage , PO:0009005 - root 
20172	LRK8	OsLRK8, OsPSKR1, PSKR1	LEUCINE-RICH RECEPTOR-LIKE KINASE 8	leucine-rich receptor-like kinase 8, Phytosulfokine Receptor 2	LEUCINE-RICH RECEPTOR-LIKE KINASE 8		2	DQ195081 (ABA41565.1). AY756174  (AAV33330.1, Oryza rufipogon). LRK8 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Seed	Os02g0153100	LOC_Os02g05910.1				GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000074 - blast disease	PO:0009009 - plant embryo , PO:0001170 - seed development stage 
20173	LRK1	OsLRK1, OsPSKR9, PSKR9	LEUCINE-RICH RECEPTOR-LIKE KINASE 1	leucine-rich receptor-like kinase 1, Phytosulfokine Receptor 9	LEUCINE-RICH RECEPTOR-LIKE KINASE 1		2	AY756174  (AAV33323.1, Oryza rufipogon). LRK1 is within the LRK gene cluster (consists of eight intronless LRK gene copies) associated with the grain yield QTL: qGY2-1.	 Tolerance and resistance - Stress tolerance	Os02g0154200	LOC_Os02g05980.1				GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0009049 - inflorescence , PO:0009005 - root 
20174	ATX	OsATX, OsHMP7, HMP7, OsHMP07	ANTIOXIDANT	antioxidant, Heavy metal-associated protein 7			1	AJ308374.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0826000	LOC_Os01g61070.1				GO:0046688 - response to copper ion, GO:0042542 - response to hydrogen peroxide, GO:0030001 - metal ion transport, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding, GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding	TO:0000074 - blast disease, TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000021 - copper sensitivity	
20175	_	OsGABA-T, GABA-T	_	gamma-aminobutyrate transaminase			2	AF324485. Q6ZH29. transaminase-like protein induced by blast fungus. 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0112900	LOC_Os02g02210.1				GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding, GO:0009411 - response to UV, GO:0010941 - regulation of cell death, GO:0050832 - defense response to fungus, GO:0030170 - pyridoxal phosphate binding, GO:0009751 - response to salicylic acid stimulus, GO:0008483 - transaminase activity, GO:0005737 - cytoplasm	TO:0000160 - UV light sensitivity, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity	
20176	IPI	OsIPI, ipi, OsIPPI1, IPPI1	ISOPENTENYL DIPHOSPHATE ISOMERASE	isopentenyl diphosphate isomerase, IPP isomerase, isopentenyl diphosphate isomerase 1	ISOPENTENYL DIPHOSPHATE ISOMERASE		7	AF188065. GO:1902767: isoprenoid biosynthetic process via mevalonate	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os07g0546000	LOC_Os07g36190.1				GO:0008299 - isoprenoid biosynthetic process, GO:0004452 - isopentenyl-diphosphate delta-isomerase activity, GO:0016787 - hydrolase activity, GO:0005739 - mitochondrion, GO:0005777 - peroxisome, GO:0005783 - endoplasmic reticulum, GO:0009416 - response to light stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	TO:0000496 - carotenoid content, TO:0000075 - light sensitivity, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	
20177	_	OsAUR1, AUR1	_	Aurora kinase 1				AB193736.									
20178	_	OsAUR2, AUR2	_	Aurora kinase 2				AB193737.									
20179	ALDH1A	ALDH1a, Aldh1a, OsALDH1a, OsALDH2C4, ALDH2C4	ALDEHYDE DEHYDROGENASE 1A	aldehyde dehydrogenase 1a, aldehyde dehydrogenase 2C4	ALDEHYDE DEHYDROGENASE 1A		1	LOC_Os01g40860. AB037421. cytosolic ALDH1. OsALDH2C4 in Simeon et al. 2010.	 Biochemical character	Os01g0591000	LOC_Os01g40860.1				GO:0004029 - aldehyde dehydrogenase (NAD) activity, GO:0005829 - cytosol		PO:0009005 - root 
20180	MMDH	OsmMDH, mMDH, OsMDH1.2, MDH1.2, OsLdh1, Ldh1	MITOCHONDRIAL MALATE DEHYDROGENASE	mitochondrial malate dehydrogenase, mitochondrial MDH, Malate dehydrogenase 1.2, Lactate Dehydrogenase 1	MITOCHONDRIAL MALATE DEHYDROGENASE		1	AF444195. PO:0030123: panicle inflorescence. GO:0097501: stress response to metal ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0649100	LOC_Os01g46070.1				GO:0006108 - malate metabolic process, GO:0030060 - L-malate dehydrogenase activity, GO:0005739 - mitochondrion, GO:0005737 - cytoplasm, GO:0009733 - response to auxin stimulus, GO:0010038 - response to metal ion, GO:0009409 - response to cold, GO:0001666 - response to hypoxia, GO:0005975 - carbohydrate metabolic process, GO:0009408 - response to heat, GO:0006099 - tricarboxylic acid cycle, GO:0009651 - response to salt stress, GO:0034059 - response to anoxia	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000015 - oxygen sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0005052 - plant callus , PO:0000025 - root tip , PO:0009029 - stamen , PO:0009009 - plant embryo , PO:0009030 - carpel , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath 
20181	_	OsPAA2, PAA2	_	20S proteasome alpha2 subunit			7	AB032062.	 Biochemical character	Os07g0614100	LOC_Os07g42260.1, LOC_Os07g42260.2				GO:0005634 - nucleus, GO:0004298 - threonine-type endopeptidase activity, GO:0019773 - proteasome core complex, alpha-subunit complex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm		
20182	_	OsCOX6b1, COX6b1, OsCOX6b-1, COX6b-1	_	cytochrome c oxidase subunit VIb-1			3	AB025187.	 Biochemical character	Os03g0390400	LOC_Os03g27290.1				GO:0005507 - copper ion binding, GO:0009853 - photorespiration, GO:0004129 - cytochrome-c oxidase activity, GO:0005739 - mitochondrion, GO:0009535 - chloroplast thylakoid membrane		
20183	_	OsCOX6b2, COX6b2, OsCOX6b-2, COX6b-2	_	cytochrome c oxidase subunit VIb-2			4	AB047923. AU030446.	 Biochemical character	Os04g0498200					GO:0004129 - cytochrome-c oxidase activity, GO:0005739 - mitochondrion		
20184	PIPLC1	OsPI-PLC1, PI-PLC1, OsPLC1, PLC1, OsC2DP69, C2DP69	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C1	phosphoinositide-specific phospholipase C1, phospholipase C1, C2 Domain-Containing Protein 69	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C1	osplc1	7	AF332874. GO:0035556: intracellular signal transduction.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0694000	LOC_Os07g49330.1, LOC_Os07g49330.3				GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0050850 - positive regulation of calcium-mediated signaling, GO:0010229 - inflorescence development, GO:0004435 - phosphoinositide phospholipase C activity, GO:0005622 - intracellular, GO:0004871 - signal transducer activity, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016042 - lipid catabolic process	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0000172 - jasmonic acid sensitivity, TO:0000608 - sodium content, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000074 - blast disease, TO:0000315 - bacterial disease resistance	PO:0000284 - subsidiary cell , PO:0001083 - inflorescence development stage , PO:0000293 - guard cell 
20185	_	PcSrp, Srp	_	serine-rich-protein				AF110148 (Oryza coarctata (Porteresia coarctata)).	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress, GO:0050801 - ion homeostasis	TO:0006001 - salt tolerance	
20186	RFC3	OsRFC3	REPLICATION FACTOR C SUBUNIT 3	Replication Factor C3	REPLICATION FACTOR C SUBUNIT 3		2	A plant homologue of 36 kDa subunit (a small subunit) of replication factor C. AB038319. Q6YZ54.	 Other	Os02g0775200	LOC_Os02g53500.2, LOC_Os02g53500.1				GO:0005737 - cytoplasm, GO:0043617 - cellular response to sucrose starvation, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0051567 - histone H3-K9 methylation, GO:0048449 - floral organ formation, GO:0031348 - negative regulation of defense response, GO:0031048 - chromatin silencing by small RNA, GO:0016246 - RNA interference, GO:0009909 - regulation of flower development, GO:0009560 - embryo sac egg cell differentiation, GO:0006346 - methylation-dependent chromatin silencing, GO:0006312 - mitotic recombination, GO:0006260 - DNA replication, GO:0005524 - ATP binding		PO:0025034 - leaf , PO:0000025 - root tip 
20187	PCS1	OsPCS1, OsPCS2, PCS2, OsPCS15, PCS15	PHYTOCHELATIN SYNTHASE 1	Phytochelatin Synthase 1	PHYTOCHELATIN SYNTHASE 1	has2	5	LC314600. AF439787. LC192427. CB646798, CK083842, CB646799, CI275800, CI126777, C96924, CI067086,  CI226673. LC192427, LC192428, LC192429. TO:0006059: cadmium concentration. TO:0006054: arsenic concentration. OsPCS2 in Uraguchi et al. 2017. OsPCS15 in Park et al. 2019. PO:0030123: panicle inflorescence. GO:1990532: stress response to nickel ion. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0415200	LOC_Os05g34290.1				GO:0010038 - response to metal ion, GO:0009617 - response to bacterium, GO:0015691 - cadmium ion transport, GO:0005737 - cytoplasm, GO:0046685 - response to arsenic, GO:0010045 - response to nickel ion, GO:0046872 - metal ion binding, GO:0009751 - response to salicylic acid stimulus, GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion, GO:0046689 - response to mercury ion, GO:0046687 - response to chromate, GO:0046688 - response to copper ion, GO:0016756 - glutathione gamma-glutamylcysteinyltransferase activity, GO:0046911 - metal chelating activity, GO:0010043 - response to zinc ion, GO:0046938 - phytochelatin biosynthetic process, GO:0055073 - cadmium ion homeostasis, GO:0043181 - vacuolar sequestering	TO:0000034 - chromium sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	PO:0009005 - root , PO:0005004 - shoot node , PO:0009006 - shoot system , PO:0025034 - leaf 
20188	_		_				3	R gene homolog. disease-resistance-like gene. AF392809, AF392810, AF392813, AF392815, AF392816, AF392831, AF392833, AF392834, AF392836, AF392837, AF392838, AF392840, AF392842, AF392852, AF392854, AF392855, AF392856, AF392857, AF392858, AF392865.	 Tolerance and resistance - Disease resistance	Os03g0579800							
20189	_		_				11	R gene homolog. disease-resistance-like gene. AF392811, AF392819, AF392844, AF392845.	 Tolerance and resistance - Disease resistance	Os11g0227100	LOC_Os11g11990.1				GO:0043531 - ADP binding		
20190	_	OsNADPH1, NADPH1	_	NADPH oxidoreductase 1			4	AB246888.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0497000	LOC_Os04g41960.1				GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0016491 - oxidoreductase activity	TO:0000276 - drought tolerance	
20191	COLD1	OsCOLD1	CHILLING TOLERANCE DIVERGENCE 1			cold1-1	4	Q7X7S8. TO:0006047: calcium content trait. GO:0090279: regulation of calcium ion import.	 Tolerance and resistance - Stress tolerance	Os04g0600800	LOC_Os04g51180.1, LOC_Os04g51180.2				GO:0016021 - integral to membrane, GO:0009741 - response to brassinosteroid stimulus, GO:0070417 - cellular response to cold, GO:0070509 - calcium ion import, GO:0019722 - calcium-mediated signaling, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0005886 - plasma membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0009409 - response to cold, GO:0051020 - GTPase binding	TO:0000303 - cold tolerance, TO:0002677 - brassinosteroid sensitivity	
20192	COLD2		CHILLING TOLERANCE DIVERGENCE 2				8	Marker Interval: RM23268-RM3155.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20193	COLD3		CHILLING TOLERANCE DIVERGENCE 3				1	Marker Interval: RM8078-RM8133.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20194	COLD4		CHILLING TOLERANCE DIVERGENCE 4				6	Marker Interval: RM4608-RM6836_2.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20195	COLD5		CHILLING TOLERANCE DIVERGENCE 5				2	Marker Interval: RM13550-RM4499.	 Tolerance and resistance - Stress tolerance						GO:0009409 - response to cold	TO:0000303 - cold tolerance	
20196	_	YDA2, OsYDA2	_	YODA 2, OsYODA2, YODA2	_		2	LOC_Os02g44642. a mitogen-activated protein kinase kinase kinase (MAPKKK). a homolog of A. thaliana  YODA.		Os02g0666300 	LOC_Os02g44642.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
20197	_		_				1	BF889444. The closest homolog: Victorin binding protein [Avena sativa] (U11693).	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0711400	LOC_Os01g51410.1, LOC_Os01g51410.2				GO:0050832 - defense response to fungus, GO:0006546 - glycine catabolic process, GO:0004375 - glycine dehydrogenase (decarboxylating) activity	TO:0000074 - blast disease	
20198	_		_				7	BF889448. The closest homolog: RNA binding protein [Arabidopsis thaliana] (AB008022).	 Tolerance and resistance - Disease resistance	Os07g0124600	LOC_Os07g03240.1				GO:0050832 - defense response to fungus, GO:0019013 - viral nucleocapsid, GO:0008283 - cell proliferation, GO:0030529 - ribonucleoprotein complex, GO:0003727 - single-stranded RNA binding, GO:0000166 - nucleotide binding	TO:0000074 - blast disease	
20199	_		_				1	BF889449. The closest homolog: Putative receptor-like protein kinase [Arabidopsis thaliana] (AL163527).	 Tolerance and resistance - Disease resistance	Os01g0631700	LOC_Os01g44110.1				GO:0001653 - peptide receptor activity, GO:0005886 - plasma membrane, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0009506 - plasmodesma, GO:0009755 - hormone-mediated signaling, GO:0031625 - ubiquitin protein ligase binding, GO:0046777 - protein amino acid autophosphorylation, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity	TO:0000074 - blast disease	
20200	KCS2	KCS, OsKCS2	3-KETOACYL-COA SYNTHASE 2	3-ketoacyl-CoA synthase	3-KETOACYL-COA SYNTHASE 2		2	BF889455. The closest homolog: Putative beta-ketoacyl-CoA synthase [Arabidopsis thaliana] (AC003105). GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0205500	LOC_Os02g11070.2, LOC_Os02g11070.1				GO:0009651 - response to salt stress, GO:0006633 - fatty acid biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009753 - response to jasmonic acid stimulus, GO:0016020 - membrane, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0009005 - root 
20201	_		_				1	BF889456. The closest homolog: An unknown protein [Arabidopsis thaliana] (AC022354).		Os01g0760000	LOC_Os01g55510.1				GO:0007017 - microtubule-based process, GO:0009753 - response to jasmonic acid stimulus, GO:0005875 - microtubule associated complex	TO:0000172 - jasmonic acid sensitivity	
20202	_		_				1	BF889457.	 Tolerance and resistance - Disease resistance	Os01g0714600	LOC_Os01g51670.1				GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
20203	CHI2	OsCHI2, OsCHI4	CHALCONE ISOMERASE 2	chalcone isomerase 2	CHALCONE ISOMERASE 2		6	BF889469. The closest homolog: Hypothetical protein from [Arabidopsis thaliana] (AC004484). OsCHI4 in Park et al. 2021, Wang et al. 2022.	 Biochemical character	Os06g0203600	LOC_Os06g10210.1, LOC_Os06g10210.2, LOC_Os06g10210.3				GO:0009737 - response to abscisic acid stimulus, GO:0005504 - fatty acid binding, GO:0006631 - fatty acid metabolic process, GO:0009813 - flavonoid biosynthetic process, GO:0009570 - chloroplast stroma, GO:0016872 - intramolecular lyase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0045430 - chalcone isomerase activity	TO:0000172 - jasmonic acid sensitivity	PO:0009066 - anther , PO:0025034 - leaf 
20204	_		_				4	BF889472. The closest homolog: Hypothetical protein from [Arabidopsis thaliana] (AC002335).		Os04g0492400	LOC_Os04g41500.1, LOC_Os04g41500.2				GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
20205	PXG9	OsPXG9	PEROXYGENASE 9	peroxygenase 9	PEROXYGENASE 9		6	BF889477. The closest homolog: An unknown protein [Arabidopsis thaliana] (AC011663).	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0254700	LOC_Os06g14370.1, LOC_Os06g14370.2, LOC_Os06g14370.3, LOC_Os06g14370.4				GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0005509 - calcium ion binding, GO:0004497 - monooxygenase activity, GO:0031408 - oxylipin biosynthetic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005811 - lipid particle, GO:0002237 - response to molecule of bacterial origin	TO:0006001 - salt tolerance, TO:0000439 - fungal disease resistance, TO:0000179 - biotic stress trait, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance	
20206	_		_				4	BF889478. 	 Tolerance and resistance - Disease resistance	Os04g0584700	LOC_Os04g49520.1				GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
20207	RSH3	OsRSH3	RELA/SPOT HOMOLOG 3	RelA/SpoT Homolog 3	RELA/SPOT HOMOLOG 3		9	BF889479. Q67UU0. The closest homolog: RSH2: Rel-SpoT homology [Arabidopsis thaliana] (AF225703). TO:0006060: leaf chlorosis.	 Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os09g0442600	LOC_Os09g27050.1				GO:0050832 - defense response to fungus, GO:0009658 - chloroplast organization, GO:0048366 - leaf development, GO:0010109 - regulation of photosynthesis, GO:0016301 - kinase activity, GO:0015969 - guanosine tetraphosphate metabolic process, GO:0005524 - ATP binding, GO:0005525 - GTP binding, GO:0008728 - GTP diphosphokinase activity, GO:0009507 - chloroplast, GO:0009753 - response to jasmonic acid stimulus	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000655 - leaf development trait, TO:0001015 - photosynthetic rate, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	PO:0001050 - leaf development stage 
20208	RPN7	OsRpn7, Rpn7	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 7	19S regulatory particle non-ATPase subunit 7, RP non-ATPase 7	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 7		4	BF889481. Q8W425. The closest homolog: Putative proteasome regulatory subunit [Arabidopsis thaliana] (AL049657). a 19S regulatory particle subunit from the rice 26S proteasome. AU162497, AU032134. AB037149.	 Biochemical character	Os04g0485000	LOC_Os04g40850.1, LOC_Os04g40850.2	GR:0061396			GO:0000502 - proteasome complex		
20209	RPL13B	RPL13b, OsRPL13b	RIBOSOMAL PROTEIN L13B	ribosomal protein L13b	RIBOSOMAL PROTEIN L13B		3	LOC_Os03g37970.1 BF889482. The closest homolog: Unknown protein (BnC24B) [Brassica napus] (S37133).	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0576700	LOC_Os03g37970.1				GO:0003723 - RNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0006412 - translation, GO:0005840 - ribosome, GO:0009414 - response to water deprivation, GO:0003735 - structural constituent of ribosome, GO:0050832 - defense response to fungus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0002657 - oxidative stress	PO:0020032 - plumule , PO:0009006 - shoot system 
20210	DGK3	OsDGK3	DIACYLGLYCEROL KINASE 3	Diacylglycerol kinase 3	DIACYLGLYCEROL KINASE 3		2	BF889483. The closest homolog: Putative diacylglycerol kinase [Arabidopsis thaliana] (AC005724).	 Tolerance and resistance - Disease resistance	Os02g0787800	LOC_Os02g54650.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0004143 - diacylglycerol kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
20211	_		_					BF889439. The closest homolog: Glycine-rich protein mRNA [Oryza sativa] (AF001894).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
20212	_		_					BF889442. The closest homolog: Neutral invertase, putative [Arabidopsis thaliana] (AC020580).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
20213	_		_					BF889445. The closest homolog: Lipid transfer protein [Oryza sativa] (AF051369).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
20214	RVDE1	OsRVDE1, OsVDE, VDE	RICE VIOLAXANTHIN DE-EPOXIDASE 1	Violaxanthin de-epoxidase	RICE VIOLAXANTHIN DE-EPOXIDASE 1		4	AF411133. AY886183-AY886212 and DQ374941-DQ374967  (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006). GO:1901001: negative regulation of response to salt stress. GO:0090333: regulation of stomatal closure. GO:1901827: zeaxanthin biosynthetic process. GO:1901174: phytoene biosynthetic process. GO:0062171: lutein biosynthetic process.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Coloration - Others	Os04g0379700	LOC_Os04g31040.1, LOC_Os04g31040.3				GO:0009106 - lipoate metabolic process, GO:0000096 - sulfur amino acid metabolic process, GO:0006098 - pentose-phosphate shunt, GO:0006364 - rRNA processing, GO:0006546 - glycine catabolic process, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0006766 - vitamin metabolic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0009737 - response to abscisic acid stimulus, GO:0010118 - stomatal movement, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009688 - abscisic acid biosynthetic process, GO:0046422 - violaxanthin de-epoxidase activity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0044272 - sulfur compound biosynthetic process, GO:0031977 - thylakoid lumen, GO:0031408 - oxylipin biosynthetic process, GO:0030154 - cell differentiation, GO:0019748 - secondary metabolic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0019216 - regulation of lipid metabolic process, GO:0009072 - aromatic amino acid family metabolic process, GO:0009108 - coenzyme biosynthetic process, GO:0009408 - response to heat, GO:0009416 - response to light stimulus, GO:0009534 - chloroplast thylakoid, GO:0009695 - jasmonic acid biosynthetic process, GO:0009965 - leaf morphogenesis, GO:0010028 - xanthophyll cycle, GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process	TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000455 - seed set percent, TO:0006001 - salt tolerance, TO:0000520 - stomatal closure rate, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity	
20215	_		_				10	AY886213-AY886237 and DQ374968-DQ374993 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os10g0159600 	LOC_Os10g07200.1						
20216	_		_				8	AY886270-AY886299 and DQ375022-DQ375045 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).	 Biochemical character	Os08g0158200 	LOC_Os08g06170.1				GO:0050660 - FAD binding, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors		
20217	_		_				12	AY886300-AY886331 and DQ375046-DQ375073 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os12g0552800 	LOC_Os12g36680.1						
20218	BTBZ1	OsBTBZ1	BTB-TYPE E3 UBIQUITIN LIGASE Z1	BTB-type E3 ubiquitin ligase Z1	BTB-TYPE E3 UBIQUITIN LIGASE Z1		1	AY886332-AY886362 and DQ375074-DQ375100 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006). a target gene for Osa-MIR3979.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0893400	LOC_Os01g66890.3, LOC_Os01g66890.1, LOC_Os01g66890.2				GO:0003712 - transcription cofactor activity, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009954 - proximal/distal pattern formation, GO:0048439 - flower morphogenesis, GO:0009555 - pollen development, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0010227 - floral organ abscission, GO:0004402 - histone acetyltransferase activity, GO:0009553 - embryo sac development, GO:0009737 - response to abscisic acid stimulus, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0001016 - relative chlorophyll content, TO:0000295 - chlorophyll-b content, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009053 - peduncle , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009051 - spikelet 
20219	_		_				7	AY886391-AY886421 and DQ375101-DQ375124 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os07g0537000	LOC_Os07g35260.1, LOC_Os07g35260.2				GO:0009506 - plasmodesma, GO:0006468 - protein amino acid phosphorylation, GO:0006952 - defense response, GO:0031625 - ubiquitin protein ligase binding, GO:0009755 - hormone-mediated signaling, GO:0046777 - protein amino acid autophosphorylation, GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0001653 - peptide receptor activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
20220	_		_				9	AY886422-AY886447 and DQ375125-DQ375151 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os09g0428900	LOC_Os09g25950.1						
20221	_		_				10	Q337C0. AY886448-AY886477 and DQ375152-DQ375179 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).		Os10g0513300 	LOC_Os10g36950.1				GO:0016021 - integral to membrane		
20222	_		_				11	AY886478-AY886508 and DQ375180-DQ375207 (O. sativa and other wild rice species, partial cds). One of the Ten High Polymorphism Genes (Tang et al. 2006).	 Biochemical character	Os11g0215400 	LOC_Os11g10910.1				GO:0004190 - aspartic-type endopeptidase activity		
20223	IDH	OsIDH	ISOCITRATE DEHYDROGENASE	isocitrate dehydrogenase, isocitrate dehydrogenase (NADP)	ISOCITRATE DEHYDROGENASE		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0573200 	LOC_Os05g49760.1				GO:0004450 - isocitrate dehydrogenase (NADP+) activity, GO:0006099 - tricarboxylic acid cycle, GO:0046685 - response to arsenic, GO:0009651 - response to salt stress, GO:0051287 - NAD or NADH binding, GO:0006102 - isocitrate metabolic process, GO:0000287 - magnesium ion binding	TO:0006001 - salt tolerance, TO:0000031 - silicon sensitivity	
20224	_	OsIFCC009208	_					CL963313. R Gene present in 9311 only. (not in Nipponbare). EF533794-EF533802 (O.sativa and O.rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20225	_	OsIFCC035754	_					CL981165. R Gene present in 9311 only. (not in Nipponbare). EF533836-EF533841 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20226	_	OsIFSC047991	_					CL981776. R Gene present in 9311 only. (not in Nipponbare).  EF533863-EF533871  (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20227	_	OsIFCC019895	_					R Gene present in 9311 only. (not in Nipponbare).	 Tolerance and resistance - Disease resistance								
20228	_	OsIFCC035751	_					CL981162. R Gene present in 9311 only. (not in Nipponbare). EF533831-EF533835 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20229	_	OsIFCC035229	_					CL980895. R Gene present in 9311 only. (not in Nipponbare).	 Tolerance and resistance - Disease resistance								
20230	_	OsIFCC043050	_				8	CL975065. R Gene present in 9311 only. (not in Nipponbare). EF533848-EF533853 (partial cds).	 Tolerance and resistance - Disease resistance								
20231	_	OsIFCC045542	_					CL980874. R Gene present in 9311 only. (not in Nipponbare). EF533854-EF533857 (partial cds).	 Tolerance and resistance - Disease resistance								
20232	_	OsIFCC023444	_					CL972735. R Gene present in 9311 only. (not in Nipponbare). EF533814-EF5338211 (O. sativa and O. rufipogon, partial cds).	 Tolerance and resistance - Disease resistance								
20233	_	OsIFCC026523	_					CL974753. R Gene present in 9311 only. (not in Nipponbare). EF533822 (partial cds).	 Tolerance and resistance - Disease resistance								
20234	_	OsIFSC046156	_					R Gene present in 9311 only. (not in Nipponbare).	 Tolerance and resistance - Disease resistance								
20235	_		_				11	LOC_Os11g15670. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os11g0263000 	LOC_Os11g15670.1, LOC_Os11g15700.1				GO:0043531 - ADP binding		
20236	_		_				1	LOC_Os01g20720. R Gene present in both Nipponbare and 9311. EF533726-EF533728 (partial cds).	 Tolerance and resistance - Disease resistance	Os01g0308300 	LOC_Os01g20720.1				GO:0043531 - ADP binding		
20237	_		_				4	LOC_Os04g41370. R Gene present in both Nipponbare and 9311. EF533735-EF533746 (partial cds).	 Tolerance and resistance - Disease resistance	Os04g0491000 	LOC_Os04g41370.1				GO:0043531 - ADP binding		
20238	_		_	Pib homologue			12	LOC_Os12g37270. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os12g0559300 	LOC_Os12g37270.1				GO:0043531 - ADP binding		
20239	_		_				12	LOC_Os12g03750 (OsIFCC032042 and OsIFCC032029 in 93-11). R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os12g0131500/Os12g0131701 	LOC_Os12g03750.1				GO:0043531 - ADP binding		
20240	_		_				1	LOC_Os01g57270. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os01g0781100  	LOC_Os01g57270.1, LOC_Os01g57270.2				GO:0043531 - ADP binding		
20241	PI64	Pi64	PYRICULARIA ORYZAE RESISTANCE 64	Magnaporthe grisea resistance-64, Blast resistance 64			1	LOC_Os01g57280. R Gene present in both Nipponbare and 9311. a CC-NBS-LRR Protein.	 Tolerance and resistance - Disease resistance	Os01g0781200 	LOC_Os01g57280.1, LOC_Os01g57280.2, LOC_Os01g57280.3				GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0043531 - ADP binding	TO:0000074 - blast disease, TO:0000468 - leaf blast disease resistance	
20242	_		_				5	LOC_Os05g16180. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os05g0250600 	LOC_Os05g16180.1				GO:0043531 - ADP binding		
20243	_		_				5	LOC_Os05g16200. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os05g0250700  	LOC_Os05g16200.1				GO:0043531 - ADP binding		
20244	_		_				11	LOC_Os11g47780. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os11g0704100 	LOC_Os11g47780.1				GO:0043531 - ADP binding		
20245	_		_	disease resistance protein domain-containing protein			8	BGIOSGA028176 (indica). R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os08g0205100 	LOC_Os08g10430.1				GO:0002215 - defense response to nematode, GO:0043531 - ADP binding, GO:0009624 - response to nematode	TO:0000384 - nematode damage resistance	
20246	PI304	OsPi304	_				8	a CC-NBS-LRR protein. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance	Os08g0205150 	LOC_Os08g10440.1				GO:0043531 - ADP binding		
20247	_	OsIFCC040819	_					CL969427. R Gene present in both Nipponbare and 9311.	 Tolerance and resistance - Disease resistance								
20248	_		_				2	LOC_Os02g50372. This is one of the three genes within the candidate gene region on chromosome 2 for root growth QTLs which are upregulated in Azucena compared to Bala.		Os02g0736800 	LOC_Os02g50372.1						
20249	_		_				5	LOC_Os05g40910. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os05g0488000 	LOC_Os05g40910.1				GO:0008234 - cysteine-type peptidase activity		
20250	_	UGT705A3, OsUGT705A3	_	Cytokinin-O-glucosyltransferase 1, UDP-dependent glycosyltransferase 705A3			5	LOC_Os05g42040. This is one of the four genes within the candidate gene region on chromosome 5 for root growth QTLs which are upregulated in Azucena compared to Bala.	 Biochemical character	Os05g0499800 	LOC_Os05g42040.1				GO:0016758 - transferase activity, transferring hexosyl groups		
20251	CCR15	OsCCR15, OsDFR8, DFR8	CINNAMOYL-COA REDUCTASE 15	Dihydroflavonol-4-reductase, Cinnamoyl-CoA reductase 15, dihydroflavonol 4-reductase 8	CINNAMOYL-COA REDUCTASE 15		9	EU605830. This is one of the two genes within the candidate gene region on chromosome 9 for root growth QTLs which are significantly higher in expression in Azucena.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0491788 	LOC_Os09g31490.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009049 - inflorescence 
20252	_		_				9	LOC_Os09g32169. This is one of the two genes within the candidate gene region on chromosome 9 for root growth QTLs which are significantly higher in expression in Azucena.									
20253	SRP RNA	SRP RNA	SIGNAL RECOGNITION PARTICLE RNA	signal recognition particle RNA			10	HG323740.							GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, GO:0048501 - signal recognition particle, plasma membrane targeting		
20254	SRP RNA	SRP RNA	SIGNAL RECOGNITION PARTICLE RNA	signal recognition particle RNA			1	HG323741, HG323742.							GO:0048501 - signal recognition particle, plasma membrane targeting, GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition		
20255	PHS39	OsAAH, AAH, OsPHS39	PREHARVEST SPROUTING 39	allantoate amidohydrolase, preharvest sprouting 39	ALLANTOATE AMIDOHYDROLASE	phs39, Osaah-1, Osaah-2	6	Q655X8. GO:1901698: response to nitrogen compound.	 Seed - Physiological traits - Dormancy,  Biochemical character,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os06g0665500	LOC_Os06g45480.1, LOC_Os06g45480.2				GO:0046872 - metal ion binding, GO:0015996 - chlorophyll catabolic process, GO:0010231 - maintenance of seed dormancy, GO:0006091 - generation of precursor metabolites and energy, GO:0006099 - tricarboxylic acid cycle, GO:0000256 - allantoin catabolic process, GO:0042445 - hormone metabolic process, GO:0047652 - allantoate deiminase activity, GO:0010136 - ureide catabolic process, GO:0006521 - regulation of cellular amino acid metabolic process, GO:0005783 - endoplasmic reticulum, GO:0048623 - seed germination on parent plant, GO:0008237 - metallopeptidase activity, GO:0006144 - purine base metabolic process	TO:0002673 - amino acid content, TO:0000011 - nitrogen sensitivity, TO:0002674 - tryptophan content, TO:0000253 - seed dormancy, TO:0000619 - vivipary	PO:0009005 - root , PO:0025034 - leaf 
20256	UAH	OsUAH	UREIDOGLYCOLATE AMIDOHYDROLASE	ureidoglycolate amidohydrolase	UREIDOGLYCOLATE AMIDOHYDROLASE		12	LOC_Os12g40550. Q2QMN7.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0597500	LOC_Os12g40550.1				GO:0005783 - endoplasmic reticulum, GO:0006144 - purine base metabolic process, GO:0009086 - methionine biosynthetic process, GO:0046872 - metal ion binding, GO:0010136 - ureide catabolic process, GO:0009409 - response to cold, GO:0000256 - allantoin catabolic process, GO:0000394 - RNA splicing, via endonucleolytic cleavage and ligation, GO:0004848 - ureidoglycolate hydrolase activity	TO:0000303 - cold tolerance	
20257	UGlyAH	OsUGlyAH	UREIDOGLYCINE AMINOHYDROLASE	Ureidoglycine aminohydrolase	UREIDOGLYCINE AMINOHYDROLASE		7	LOC_Os07g31270. Q7F1K9.	 Biochemical character	Os07g0495000 	LOC_Os07g31270.1				GO:0006144 - purine base metabolic process, GO:0005783 - endoplasmic reticulum, GO:0000256 - allantoin catabolic process, GO:0003700 - transcription factor activity, GO:0071522 - ureidoglycine aminohydrolase activity, GO:0019252 - starch biosynthetic process, GO:0043085 - positive regulation of catalytic activity, GO:0000023 - maltose metabolic process, GO:0046872 - metal ion binding		
20258	ALN	OsALN	ALLANTOINASE	allantoin amidohydrolase, allantoinase	ALLANTOINASE		4	B9FDB8. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0680400 	LOC_Os04g58390.1				GO:0010136 - ureide catabolic process, GO:0006995 - cellular response to nitrogen starvation, GO:0031667 - response to nutrient levels, GO:0042594 - response to starvation, GO:0000256 - allantoin catabolic process, GO:0005783 - endoplasmic reticulum, GO:0006144 - purine base metabolic process, GO:0004038 - allantoinase activity, GO:0050897 - cobalt ion binding, GO:0008270 - zinc ion binding	TO:0000011 - nitrogen sensitivity, TO:0000401 - plant growth hormone sensitivity	
20259	FLO7	Flo7, flo7(t), flo-7	FLOURY ENDOSPERM 7	floury endosperm7, floury-7, floury 7		flo7	5	A recessive floury gene in Suweon 542 named flo7(t) is located in the 19.33-19.86 Mbp region of chromosome 5, with RM18639. flo7(t) is physically linked to flo4, or might be another mutated allele of the OsPPDKB gene.	 Seed - Physiological traits - Storage substances							TO:0000104 - floury endosperm	
20260	_	OsDof1, Dof1, OsDof-1, OsDof6, Dof6	_	Dof zinc factor 1, Dof transcription factor 1			1	OsDof6 in Liu et al. 2021.	 Other	Os01g0865800	LOC_Os01g64590.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
20261	DOF3	OsDof3, Dof3, OsDof-3, OsDof1	DNA BINDING WITH ONE FINGER 3	Dof zinc factor 3, Dof transcription factor 3	DNA BINDING WITH ONE FINGER 3		1	OsDof1 in Liu et al. 2021.	 Tolerance and resistance - Stress tolerance,  Other		LOC_Os01g09720				GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000303 - cold tolerance	
20262	_	OsDof4, Dof4, OsDof-4, Dof-4, OsDof3, Dof3	_	Dof zinc factor 4, Dof transcription factor 4			1	OsDof3 in Liu et al. 2021.	 Other,  Reproductive organ - Heading date	Os01g0277500 	LOC_Os01g17000.1				GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048578 - positive regulation of long-day photoperiodism, flowering	TO:0000137 - days to heading	PO:0025034 - leaf 
20263	_	OsDof5, Dof5, OsDof-5, OsDof4, Dof4	_	Dof zinc factor 5, Dof transcription factor 5			1	OsDof4 in Liu et al. 2021.	 Other	Os01g0673700	LOC_Os01g48290.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		
20264	CYP71C4	OsCYP71C4	CYTOCHROME P450 71C4	CYP450-Like Gene, CYP-like protein	CYTOCHROME P450 71C4		8	BGIOSGA027791. GO:0044550: secondary metabolite biosynthetic process. GO:0090354: regulation of auxin metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0105700 	LOC_Os08g01480.1				GO:0010118 - stomatal movement, GO:0005506 - iron ion binding, GO:0009628 - response to abiotic stimulus, GO:0009850 - auxin metabolic process, GO:0010038 - response to metal ion, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0009416 - response to light stimulus, GO:0006915 - apoptosis, GO:0000910 - cytokinesis, GO:0009826 - unidimensional cell growth, GO:0009790 - embryonic development, GO:0009908 - flower development, GO:0048366 - leaf development, GO:0006952 - defense response	TO:0000168 - abiotic stress trait, TO:0000248 - primary macronutrient sensitivity, TO:0000655 - leaf development trait, TO:0000622 - flower development trait, TO:0000620 - embryo development trait, TO:0000075 - light sensitivity	PO:0007631 - plant embryo stage , PO:0007615 - flower development stage , PO:0001031 - 4 root elongation stage , PO:0001050 - leaf development stage 
20265	_	PR5	_	pathogenesis-related gene 5, PATHOGENESIS-RELATED PROTEINS5			8		 Tolerance and resistance - Disease resistance	Os08g0140700/Os08g0140850	LOC_Os08g04580.1				GO:0006950 - response to stress, GO:0006952 - defense response, GO:0016021 - integral to membrane		
20266	GSD1	OsREM6.6, REM6.6, OsGSD1	GRAIN SETTING DEFECT1	Grain setting defect1, Grain setting defect 1, Remorin 6.6, remorin group 6 member 6, remorin family protein GSD1	REMORIN 6.6	gsd1, gsd1-D	4		 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Seed - Morphological traits	Os04g0620200	LOC_Os04g52920.1, LOC_Os04g52920.2				GO:0010431 - seed maturation, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0005886 - plasma membrane, GO:0008643 - carbohydrate transport, GO:0009506 - plasmodesma	TO:0000696 - starch content, TO:0000382 - 1000-seed weight, TO:0000399 - grain thickness, TO:0000300 - glucose content, TO:0006005 - fructose content, TO:0000328 - sucrose content, TO:0002661 - seed maturation, TO:0000333 - sugar content, TO:0000291 - carbohydrate content	PO:0000071 - companion cell , PO:0007632 - seed maturation stage 
20267	REM0.1	OsREM0.1	REMORIN 0.1	Remorin 0.1, remorin group 0 member 1	REMORIN 0.1		2			Os02g0658400 	LOC_Os02g44102.1						
20268	REM0.2	OsREM0.2	REMORIN 0.2	Remorin 0.2, remorin group 0 member 2	REMORIN 0.2		10			Os10g0325400 	LOC_Os10g17790.1						
20269	REM1.1	OsREM1.1	REMORIN 1.1	Remorin 1.1, remorin group 1 member 1	REMORIN 1.1		2			Os02g0824500 	LOC_Os02g57840.1, LOC_Os02g57840.2				GO:0003677 - DNA binding		
20270	REM1.2	OsREM1.2	REMORIN 1.2	Remorin 1.2, remorin group 1 member 2	REMORIN 1.2		10	miR414-target.		Os10g0503800 	LOC_Os10g36000.1, LOC_Os10g36000.2, LOC_Os10g36000.3						
20271	REM1.3	OsREM1.3	REMORIN 1.3	Remorin 1.3, remorin group 1 member 3	REMORIN 1.3		3	LOC_Os03g02040.		Os03g0111200 	LOC_Os03g02040.1						
20272	REM1.4	OsREM1.4	REMORIN 1.4	Remorin 1.4, remorin group 1 member 4	REMORIN 1.4	Osrem1.4	2	The homologous remorin of NbREM1.	 Tolerance and resistance - Disease resistance	Os02g0642200 	LOC_Os02g42880.1				GO:0050687 - negative regulation of defense response to virus, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance	
20273	REM4.2	OsREM4.2	REMORIN 4.2	Remorin 4.2, remorin group 4 member 2	REMORIN 4.2		3			Os03g0808300	LOC_Os03g59360.1						
20274	REM4.3	OsREM4.3	REMORIN 4.3	Remorin 4.3, remorin group 4 member 3	REMORIN 4.3		7			Os07g0208600 	LOC_Os07g10780.1						
20275	REM5.1	OsREM5.1	REMORIN 5.1	Remorin 5.1, remorin group 5 member 1	REMORIN 5.1		2	LOC_Os02g52810.		Os02g0767000	LOC_Os02g52810.1, LOC_Os02g52810.2						
20276	REM5.2	OsREM5.2	REMORIN 5.2	Remorin 5.2, remorin group 5 member 2	REMORIN 5.2		8			Os08g0471800	LOC_Os08g36760.1						
20277	LP1	OsREM5.3, REM5.3, OsLP1	LONG PANICLE 1 	Remorin 5.3, remorin group 5 member 3, remorin family protein LP1	REMORIN 5.3		9		 Reproductive organ - panicle	Os09g0456100	LOC_Os09g28300.1, LOC_Os09g28300.2					TO:0000040 - panicle length	
20278	REM6.1	OsREM6.1	REMORIN 6.1	Remorin 6.1, remorin group 6 member 1	REMORIN 6.1		2			Os02g0116800	LOC_Os02g02500.1						
20279	REM6.2	OsREM6.2	REMORIN 6.2	Remorin 6.2, remorin group 6 member 2	REMORIN 6.2		3			Os03g0120200	LOC_Os03g02840.1, LOC_Os03g02840.2, LOC_Os03g02840.3, LOC_Os03g02840.4						
20280	REM6.3	OsREM6.3	REMORIN 6.3	Remorin 6.3, remorin group 6 member 3	REMORIN 6.3		12			Os12g0613600	LOC_Os12g41940.1, LOC_Os12g41940.2						
20281	REM6.4	OsREM6.4	REMORIN 6.4	Remorin 6.4, remorin group 6 member 4	REMORIN 6.4		11			Os11g0616300	LOC_Os11g40210.1						
20282	REM6.5	OsREM6.5	REMORIN 6.5	Remorin 6.5, remorin group 6 member 5	REMORIN 6.5		2			Os02g0602000	LOC_Os02g39000.1				GO:0005634 - nucleus		
20283	_	OsPTP2, PTP2	_	protein tyrosine phosphatase 2			11	LOC_Os11g07850. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0180200	LOC_Os11g07850.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0009628 - response to abiotic stimulus, GO:0004725 - protein tyrosine phosphatase activity, GO:0051707 - response to other organism	TO:0000112 - disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait	
20284	_	VLN1, OsVLN1, Os VLN1	_	VILLIN1, VILLIN 1			5	LOC_Os05g06110.		Os05g0153000	LOC_Os05g06110.1				GO:0051017 - actin filament bundle formation		
20285	_	VLN3, OsVLN3, Os VLN3	_	VILLIN3, VILLIN 3			6	LOC_Os06g44890.		Os06g0659300	LOC_Os06g44890.1				GO:0007010 - cytoskeleton organization		
20286	_	VLN4, OsVLN4, Os VLN4	_	VILLIN4, VILLIN 4			4	LOC_Os04g51440.		Os04g0604000	LOC_Os04g51440.1, LOC_Os04g51440.2				GO:0007010 - cytoskeleton organization		
20287	_	VLN5, OsVLN5, Os VLN5	_	VILLIN5, VILLIN 5			8	LOC_Os08g14230.		Os08g0240800	LOC_Os08g14230.1				GO:0007010 - cytoskeleton organization		
20288	_	OsPM19L2	_	AWPM-19-like protein 2			7			Os07g0422100 	LOC_Os07g24000.1				GO:0016021 - integral to membrane		
20289	_	OsPM19L3	_	AWPM-19-like protein 3			5	XP_006654338.1 (LOC102710696 [Oryza brachyantha]).							GO:0016021 - integral to membrane		
20290	_	OsPM19L4	_	AWPM-19-like protein 4			7	XP_006658505.1 (LOC102721097 [Oryza brachyantha]).									
20291	_		_	Pyruvate dehydrogenase E1 alpha subunit, Pyruvate dehydrogenase E1 component subunit alpha-2			6	Q654V6.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0246500 	LOC_Os06g13720.1				GO:0006096 - glycolysis, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005759 - mitochondrial matrix, GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity, GO:0006086 - acetyl-CoA biosynthetic process from pyruvate	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
20292	GDA1	OsAH, AH, OsGDA1	GUANINE DEAMINASE 1 	amidohydrolase, guanine deaminase 1	GUANINE DEAMINASE 1 		12	GO:0080181: lateral root branching. GO:0072521: purine-containing compound metabolic process. GO:1905642: negative regulation of DNA methylation.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os12g0468600	LOC_Os12g28270.1, LOC_Os12g28270.2				GO:0010137 - ureide biosynthetic process, GO:0044030 - regulation of DNA methylation, GO:0009414 - response to water deprivation, GO:0046098 - guanine metabolic process, GO:0046111 - xanthine biosynthetic process, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, GO:0009399 - nitrogen fixation	TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	
20293	_	OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S	_	serine/threonin-protein kinase AFC2			12	LOC_Os12g27520. KR107935. BF108323. GO:0080181: lateral root branching. LAMMER Kinase. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Root	Os12g0460800	LOC_Os12g27520.1, LOC_Os12g27520.3, LOC_Os12g27520.4				GO:0046777 - protein amino acid autophosphorylation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0004672 - protein kinase activity, GO:0006397 - mRNA processing, GO:0009414 - response to water deprivation, GO:0043484 - regulation of RNA splicing, GO:0005524 - ATP binding, GO:0045727 - positive regulation of translation, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000043 - root anatomy and morphology trait	
20294	_	OsPOEI19, POEI19	_	Pollen Ole e I allergen and extensin 19			12	LOC_Os12g27520. GO:0080181: lateral root branching.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os12g0472800 	LOC_Os12g28770.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000043 - root anatomy and morphology trait	
20295	GDPD	OsGdpD, GdpD, OsGDPDL4, GDPDL4, OsGL4, GL4	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	Glycerophosphoryl diester phosphodiesterase, GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 4, GDPD-LIKE 4	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE		12		 Vegetative organ - Root,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os12g0456700	LOC_Os12g27102.1, LOC_Os12g27102.2, LOC_Os12g27102.3				GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0006629 - lipid metabolic process, GO:0006071 - glycerol metabolic process, GO:0048767 - root hair elongation, GO:0048653 - anther development	TO:0002665 - root hair length, TO:0000531 - anther length	PO:0009030 - carpel 
20296	_	Rf6	_	fertility restoration-6, RESTORATION OF FERTILITY 6			8	Pentatricopeptide-repeat family protein. HL-CMS restorer.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os08g0110200	LOC_Os08g01870.1				GO:0009555 - pollen development, GO:0006397 - mRNA processing, GO:0005739 - mitochondrion	TO:0000308 - male fertility restoration trait	
20297	_		_	NAD dependent epimerase/dehydratase			7	LOC_Os07g41050. photosynthetic electron transport related gene. 	 Biochemical character	Os07g0601600 	LOC_Os07g41050.1						
20298	_		_	flavonol sulfotransferase			7	LOC_Os07g05460. photosynthetic electron transport related gene. 	 Biochemical character	Os07g0148600 	LOC_Os07g05460.1				GO:0008146 - sulfotransferase activity		
20299	YGL9	OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9	YELLOW-GREEN LEAF 9	Chloroplast Signal Recognition Particle 43, chloroplast signal recognition particle 43 KD protein, chloroplast signal recognition particle 43 kDa protein, yellow green leaf 9, pale- green leaf 3		ygl9, pgl3	3	Q8LSQ2. TO:0012004: quantum yield.	 Vegetative organ - Culm,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Coloration - Others,  Vegetative organ - Leaf,  Reproductive organ - Heading date	Os03g0131900	LOC_Os03g03990.1				GO:0010114 - response to red light, GO:0009637 - response to blue light, GO:0009535 - chloroplast thylakoid membrane, GO:0005786 - signal recognition particle, endoplasmic reticulum targeting, GO:0080085 - signal recognition particle, chloroplast targeting, GO:0048573 - photoperiodism, flowering, GO:0015995 - chlorophyll biosynthetic process, GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0015994 - chlorophyll metabolic process, GO:0010150 - leaf senescence, GO:0016116 - carotenoid metabolic process, GO:0046777 - protein amino acid autophosphorylation, GO:0045038 - protein import into chloroplast thylakoid membrane, GO:0042440 - pigment metabolic process, GO:0019344 - cysteine biosynthetic process, GO:0015979 - photosynthesis, GO:0010218 - response to far red light, GO:0009941 - chloroplast envelope, GO:0009760 - C4 photosynthesis, GO:0010155 - regulation of proton transport, GO:0016037 - absorption of light, GO:0009658 - chloroplast organization, GO:0009744 - response to sucrose stimulus	TO:0000496 - carotenoid content, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0000605 - hydrogen peroxide content, TO:0000326 - leaf color, TO:0000432 - temperature response trait, TO:0000207 - plant height, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000293 - chlorophyll-a content, TO:0000346 - tiller number, TO:0000316 - photosynthetic ability, TO:0000295 - chlorophyll-b content, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0001054 - 4 leaf senescence stage 
20300	_		_	mesocotyl length candidate gene			1			Os01g0392100	LOC_Os01g29740.1				GO:0016021 - integral to membrane		
20301	_		_	mesocotyl length candidate gene, SDA1 domain-containing protein			4			Os04g0630000	LOC_Os04g53770.1				GO:0030036 - actin cytoskeleton organization, GO:0042273 - ribosomal large subunit biogenesis, GO:0000055 - ribosomal large subunit export from nucleus		
20302	_		_	mesocotyl length candidate gene, pentatricopeptide repeat-containing protein			7			Os07g0615000	LOC_Os07g42354.1						
20303	_	OSVDAC6, osvdac6, OsVDAC6, VDAC6	_	voltage-dependent anion channel 6, voltage-dependent anion-selective channel 6			3	LOC_Os03g04460. Q10S27.	 Biochemical character	Os03g0137500 	LOC_Os03g04460.1				GO:0008308 - voltage-gated anion channel activity, GO:0015288 - porin activity, GO:0005886 - plasma membrane, GO:0005741 - mitochondrial outer membrane, GO:0046930 - pore complex		
20304	VDAC7	OSVDAC7, osvdac7, OsVDAC7, TOM40, OsTOM40	VOLTAGE-DEPENDENT ANION CHANNEL 7	voltage-dependent anion channel 7, voltage-dependent anion-selective channel 7, mitochondrial outer membrane translocase Tom40, TRANSLOCASE OUTER MEMBRANE SUBUNIT 40	VOLTAGE-DEPENDENT ANION CHANNEL 7		1		 Biochemical character	Os01g0276200	LOC_Os01g16910.1				GO:0030150 - protein import into mitochondrial matrix, GO:0055085 - transmembrane transport, GO:0005741 - mitochondrial outer membrane, GO:0008320 - protein transmembrane transporter activity, GO:0005742 - mitochondrial outer membrane translocase complex		
20305	RLS2	OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70	RAPID LEAF SENESCENCE 2	rapid leaf senescence2, rapid leaf senescence 2, exocyst subunit EXO70 family protein A1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1	rls2, rls2-1, rls2-2	4	a key subunit of exocysts. TO:0020109: vascular bundle development trait. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os04g0685600 	LOC_Os04g58880.1				GO:0006887 - exocytosis, GO:0009531 - secondary cell wall, GO:0016020 - membrane, GO:0016049 - cell growth, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0000145 - exocyst, GO:0001944 - vasculature development, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000145 - internode length, TO:0000470 - vascular tissue related trait, TO:0000652 - leaf necrosis, TO:0000207 - plant height	PO:0009006 - shoot system , PO:0009010 - seed , PO:0009005 - root , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0000034 - vascular system 
20306	TET1	OsTET1	TETRASPANIN 1	tetraspanin 1	TETRASPANIN 1		1	LOC_Os01g74570.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0977100	LOC_Os01g74570.1				GO:0006995 - cellular response to nitrogen starvation, GO:0010438 - cellular response to sulfur starvation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0009408 - response to heat	TO:0000249 - leaf senescence, TO:0000259 - heat tolerance	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0009051 - spikelet 
20307	TET2	OsTET2	TETRASPANIN 2	tetraspanin 2	TETRASPANIN 2		2	LOC_Os02g12750.	 Tolerance and resistance - Stress tolerance	Os02g0219800	LOC_Os02g12750.1				GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0006995 - cellular response to nitrogen starvation, GO:0006970 - response to osmotic stress, GO:0005886 - plasma membrane, GO:0051365 - cellular response to potassium ion starvation, GO:0016036 - cellular response to phosphate starvation, GO:0042542 - response to hydrogen peroxide, GO:0016021 - integral to membrane, GO:0010438 - cellular response to sulfur starvation, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
20308	TET3	OsTET3	TETRASPANIN 3	tetraspanin 3	TETRASPANIN 3		2	LOC_Os02g49630.	 Tolerance and resistance - Stress tolerance	Os02g0728800	LOC_Os02g49630.1				GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide	TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress	PO:0025034 - leaf 
20309	TET4	OsTET4	TETRASPANIN 4	tetraspanin 4	TETRASPANIN 4		3	LOC_Os03g01012.	 Tolerance and resistance - Stress tolerance	Os03g0100020	LOC_Os03g01012.1				GO:0006970 - response to osmotic stress, GO:0010075 - regulation of meristem growth, GO:0010015 - root morphogenesis, GO:0010014 - meristem initiation, GO:0009956 - radial pattern formation, GO:0009944 - polarity specification of adaxial/abaxial axis, GO:0009934 - regulation of meristem structural organization, GO:0009926 - auxin polar transport, GO:0009855 - determination of bilateral symmetry, GO:0009554 - megasporogenesis, GO:0009506 - plasmodesma, GO:0008361 - regulation of cell size, GO:0005886 - plasma membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0040007 - growth, GO:0019344 - cysteine biosynthetic process, GO:0016021 - integral to membrane, GO:0010305 - leaf vascular tissue pattern formation	TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity	PO:0025034 - leaf 
20310	TET5	OsTET5	TETRASPANIN 5	tetraspanin 5	TETRASPANIN 5		3	LOC_Os03g63600.	 Tolerance and resistance - Stress tolerance	Os03g0853000	LOC_Os03g63600.1				GO:0009741 - response to brassinosteroid stimulus, GO:0010150 - leaf senescence, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0005886 - plasma membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane, GO:0010438 - cellular response to sulfur starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000249 - leaf senescence	PO:0025034 - leaf , PO:0009005 - root , PO:0001054 - 4 leaf senescence stage 
20311	TET6	OsTET6	TETRASPANIN 6	tetraspanin 6	TETRASPANIN 6		3	LOC_Os03g63620.	 Tolerance and resistance - Stress tolerance	Os03g0853200	LOC_Os03g63620.1				GO:0010438 - cellular response to sulfur starvation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0009507 - chloroplast, GO:0042542 - response to hydrogen peroxide, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000303 - cold tolerance	PO:0025034 - leaf 
20312	TET7	OsTET7	TETRASPANIN 7	tetraspanin 7	TETRASPANIN 7		5	LOC_Os05g03140.	 Tolerance and resistance - Stress tolerance	Os05g0122800	LOC_Os05g03140.1				GO:0006970 - response to osmotic stress, GO:0009753 - response to jasmonic acid stimulus, GO:0016021 - integral to membrane, GO:0042542 - response to hydrogen peroxide, GO:0005783 - endoplasmic reticulum, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf 
20313	TET8	OsTET8	TETRASPANIN 8	tetraspanin 8	TETRASPANIN 8		5	LOC_Os05g03530.		Os05g0126100	LOC_Os05g03530.1, LOC_Os05g03530.2, LOC_Os05g03530.3				GO:0016021 - integral to membrane		PO:0009005 - root , PO:0025034 - leaf 
20314	TET9	OsTET9	TETRASPANIN 9	tetraspanin 9	TETRASPANIN 9		6	LOC_Os06g37510.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os06g0572400	LOC_Os06g37510.1				GO:0016021 - integral to membrane, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0025034 - leaf , PO:0009046 - flower , PO:0009051 - spikelet , PO:0001054 - 4 leaf senescence stage 
20315	TET10	OsTET10	TETRASPANIN 10	tetraspanin 10	TETRASPANIN 10		6	LOC_Os06g44310.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os06g0653100	LOC_Os06g44310.1				GO:0010150 - leaf senescence, GO:0042542 - response to hydrogen peroxide, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0002657 - oxidative stress, TO:0000249 - leaf senescence	PO:0009046 - flower , PO:0001054 - 4 leaf senescence stage , PO:0009051 - spikelet 
20316	TET11	OsTET11	TETRASPANIN 11	tetraspanin 11	TETRASPANIN 11		8	LOC_Os08g16050.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os08g0260600	LOC_Os08g16050.1				GO:0009414 - response to water deprivation, GO:0010150 - leaf senescence, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0009753 - response to jasmonic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000249 - leaf senescence, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
20317	TET12	OsTET12	TETRASPANIN 12	tetraspanin 12	TETRASPANIN 12		8	LOC_Os08g34460.	 Tolerance and resistance - Stress tolerance	Os08g0443800	LOC_Os08g34460.1				GO:0005886 - plasma membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0016021 - integral to membrane, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf , PO:0009005 - root 
20318	TET14	OsTET14	TETRASPANIN 14	tetraspanin 14	TETRASPANIN 14		10	LOC_Os10g35980.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os10g0503600	LOC_Os10g35980.1				GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0016021 - integral to membrane, GO:0006970 - response to osmotic stress, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
20319	TET15	OsTET15	TETRASPANIN 15	tetraspanin 15	TETRASPANIN 15		12	LOC_Os12g14580.		Os12g0249100	LOC_Os12g14580.1				GO:0016021 - integral to membrane		PO:0025034 - leaf 
20320	RPA2B	RPA2b, OsRPA2b	REPLICATION PROTEIN A 2B	Replication Protein A2b	REPLICATION PROTEIN A 2B		2	Q6H7J5.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0633400	LOC_Os02g42230.1				GO:0006310 - DNA recombination, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0006260 - DNA replication, GO:0051321 - meiotic cell cycle, GO:0006281 - DNA repair		
20321	EXO70A2	OsEXO70A2, OsExo70A2, OrysaA2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A2	exocyst subunit EXO70 family protein A2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A2		4			Os04g0685500 	LOC_Os04g58870.1, LOC_Os04g58870.2, LOC_Os04g58870.3				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20322	EXO70A3	OsEXO70A3, OsExo70A3, OrysaA3_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3	exocyst subunit EXO70 family protein A3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3		11			Os11g0157400	LOC_Os11g05880.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20323	EXO70A4	OsEXO70A4, OsExo70A4, OrysaA4_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A4	exocyst subunit EXO70 family protein A4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A4		12			Os12g0159700	LOC_Os12g06270.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20324	EXO70B1	OsEXO70B1, OsExo70B1, OrysaB1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1	exocyst subunit EXO70 family protein B1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1	exo70B1, exo70B1-1, exo70B1-2	1	GO:0140426: PAMP-triggered immunity signalling pathway. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance	Os01g0827500 	LOC_Os01g61180.1				GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0006887 - exocytosis, GO:0000145 - exocyst	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease	PO:0009010 - seed , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009005 - root 
20325	EXO70B2	OsEXO70B2, OsExo70B2, OrysaB2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B2	exocyst subunit EXO70 family protein B2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B2		1			Os01g0827600 	LOC_Os01g61190.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20326	EXO70B3	OsEXO70B3, OsExo70B3, OrysaB3_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B3	exocyst subunit EXO70 family protein B3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B3		5	PO:0030123: panicle inflorescence.		Os05g0473500 	LOC_Os05g39610.2, LOC_Os05g39610.1				GO:0000145 - exocyst, GO:0009753 - response to jasmonic acid stimulus, GO:0006887 - exocytosis	TO:0000172 - jasmonic acid sensitivity	PO:0009010 - seed , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0009049 - inflorescence , PO:0005052 - plant callus 
20327	EXO70C1	OsEXO70C1, OsExo70C1, OrysaC1_Exo70, OrysaE1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1	exocyst subunit EXO70 family protein C1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1		12	OrysaE1_Exo70 (Os12g0165500 = obsolete data in IRGSP Ver1.0, C7JA30_ORYSJ = Os12g0165600) in Cvrckova et al. 2012.		Os12g0165600 	LOC_Os12g06840.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20328	EXO70D1	OsEXO70D1, OsExo70D1, OrysaD1_Exo70	_	exocyst subunit EXO70 family protein D1			9			Os09g0439600 	LOC_Os09g26820.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20329	EXO70D2	OsEXO70D2, OsExo70D2, OrysaD2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2	exocyst subunit EXO70 family protein D2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2		8			Os08g0455700 	LOC_Os08g35470.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20330	EXO70E1	OsEXO70E1, OsExo70E1	_	exocyst subunit EXO70 family protein E1			1	LOC_Os01g55810 (not found in MSU Rice Genome Annotation Project Release 7 data) in Synek et al. 2006.							GO:0006887 - exocytosis, GO:0000145 - exocyst		
20331	EXO70F1	OsEXO70F1, OsExo70F1, OrysaF1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F1	exocyst subunit EXO70 family protein F1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F1		1	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os01g0921400	LOC_Os01g69230.1				GO:0046686 - response to cadmium ion, GO:0009737 - response to abscisic acid stimulus, GO:0000145 - exocyst, GO:0009753 - response to jasmonic acid stimulus, GO:0006887 - exocytosis	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root 
20332	EXO70F2	OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F2	exocyst subunit EXO70 family protein F2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F2		2	PDB 7PP2: Protein structure of the OsExo70F2/ AVR-Pii complex.	 Tolerance and resistance - Disease resistance	Os02g0505400	LOC_Os02g30230.1, LOC_Os02g30230.2, LOC_Os02g30230.3				GO:0006887 - exocytosis, GO:0032491 - detection of molecule of fungal origin, GO:0009620 - response to fungus, GO:0000145 - exocyst	TO:0000074 - blast disease	
20333	EXO70F3	OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F3	exocyst subunit EXO70 family protein F3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F3		4		 Tolerance and resistance - Disease resistance	Os04g0382200	LOC_Os04g31330.1				GO:0000145 - exocyst, GO:0009620 - response to fungus, GO:0006887 - exocytosis, GO:0032491 - detection of molecule of fungal origin	TO:0000074 - blast disease	
20334	EXO70F4	OsEXO70F4, OsExo70F4, OrysaF4_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F4	exocyst subunit EXO70 family protein F4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F4		8			Os08g0530300	LOC_Os08g41820.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20335	EXO70F5	OsEXO70F5, OsExo70F5, OrysaF5_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F5	exocyst subunit EXO70 family protein F5	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F5		6	LOC_Os06g14450.		Os06g0255900	LOC_Os06g14450.1, LOC_Os06g14450.2, LOC_Os06g14450.3				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20336	EXO70G1	OsEXO70G1, OsExo70G1, OrysaG1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G1	exocyst subunit EXO70 family protein G1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G1		2			Os02g0149700 	LOC_Os02g05620.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20337	EXO70G2	OsEXO70G2, OsExo70G2, OrysaG2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G2	exocyst subunit EXO70 family protein G2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G2		6	PO:0030123: panicle inflorescence.		Os06g0698600	LOC_Os06g48330.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		PO:0009010 - seed , PO:0005052 - plant callus , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009006 - shoot system 
20338	EXO70H1	OsEXO70H1a, EXO70H1a, OsExo70H1a, OsEXO70H1b, EXO70H1b, OrysaH1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H1	exocyst subunit EXO70 family protein H1a, exocyst subunit EXO70 family protein H1b	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H1		11	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os11g0649900 	LOC_Os11g42989.1, LOC_Os11g43049.1				GO:0046686 - response to cadmium ion, GO:0006887 - exocytosis, GO:0000145 - exocyst		
20339	EXO70H2	OsEXO70H2, OsExo70H2, OrysaH2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2	exocyst subunit EXO70 family protein H2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2		3			Os03g0448200 	LOC_Os03g33520.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20340	EXO70H3A	OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70, OsEXO70H3, EXO70H3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3A	exocyst subunit EXO70 family protein H3a	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3A		12	OsEXO70H3 in Wu et al. 2022.	 Tolerance and resistance - Insect resistance	Os12g0100700 	LOC_Os12g01040.1				GO:0000145 - exocyst, GO:0006887 - exocytosis, GO:0009306 - protein secretion, GO:0009808 - lignin metabolic process, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance, TO:0000731 - lignin content	
20341	EXO70H3B	OsEXO70H3b, EXO70H3b, OsExo70H3b, OrysaH3b_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3B	exocyst subunit EXO70 family protein H3b	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3B		11			Os11g0100800 	LOC_Os11g01050.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20342	EXO70I1	OsEXO70I1, OsExo70I1, OrysaI1_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN I1	exocyst subunit EXO70 family protein I1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN I1		8	LOC_Os08g40840.		Os08g0519900	LOC_Os08g40840.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20343	EXO70FX1	OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70, FX1, OsFX1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX1	exocyst subunit EXO70 family protein FX1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX1		5	GO:1990170: stress response to cadmium ion. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os05g0369900 	LOC_Os05g30700.1				GO:0046686 - response to cadmium ion, GO:0000145 - exocyst, GO:0006887 - exocytosis		
20344	EXO70FX2	OsEXO70FX2, OsExo70FX2, OrysaFX2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX2	exocyst subunit EXO70 family protein FX2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX2		5			Os05g0369300 	LOC_Os05g30640.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20345	EXO70FX3	OsEXO70FX3, OsExo70FX3, OrysaFX3_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX3	exocyst subunit EXO70 family protein FX3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX3		5			Os05g0369500	LOC_Os05g30660.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		PO:0009010 - seed 
20346	EXO70FX4	OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70, OsEXO70J1, EXO70J1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX4	exocyst subunit EXO70 family protein FX4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX4		8	OsEXO70J1 in Li et al. 2023.	 Tolerance and resistance - Insect resistance	Os08g0232700	LOC_Os08g13570.1				GO:0000145 - exocyst, GO:0006887 - exocytosis, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	PO:0025034 - leaf 
20347	EXO70FX5	OsEXO70FX5, OsExo70FX5, OrysaFX5_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX5	exocyst subunit EXO70 family protein FX5	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX5		9			Os09g0347300	LOC_Os09g17810.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20348	EXO70FX6	OsEXO70FX6, OsExo70FX6, OrysaFX6_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX6	exocyst subunit EXO70 family protein FX6	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX6		2			Os02g0575900	LOC_Os02g36619.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20349	EXO70FX7	OsEXO70FX7, OsExo70FX7, OrysaFX7_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX7	exocyst subunit EXO70 family protein FX7	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX7		1			Os01g0383100	LOC_Os01g28600.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20350	SR1	EXO70FX8, OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70, OsSR1	SHORT-ROOT 1	exocyst subunit EXO70 family protein FX8	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX8	sr1	11	GO:1905177: tracheary element differentiation. TO:0020103: adventitious root length.	 Vegetative organ - Root	Os11g0572200 	LOC_Os11g36400.1				GO:0000145 - exocyst, GO:0051301 - cell division, GO:0048364 - root development, GO:0010089 - xylem development, GO:0007639 - homeostasis of number of meristem cells, GO:0008283 - cell proliferation, GO:0006887 - exocytosis	TO:0000228 - moisture content related trait, TO:0000131 - leaf water potential, TO:0000207 - plant height, TO:0001012 - lateral root length, TO:0002692 - root meristem development, TO:0000656 - root development trait	PO:0006085 - root meristem , PO:0025425 - xylem development stage , PO:0000290 - tracheary element , PO:0009006 - shoot system , PO:0007520 - root development stage , PO:0009005 - root 
20351	EXO70FX9	OsEXO70FX9, OsExo70FX9, OrysaFX9_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX9	exocyst subunit EXO70 family protein FX9	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX9		6			Os06g0183600 	LOC_Os06g08460.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20352	EXO70FX10	OsEXO70FX10, OsExo70FX10, OrysaFX10_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX10	exocyst subunit EXO70 family protein FX10	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX10		7			Os07g0210000 	LOC_Os07g10910.1, LOC_Os07g10910.2				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20353	EXO70FX11	OsEXO70FX11, OsExo70FX11, OrysaFX11_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX11	exocyst subunit EXO70 family protein FX11	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX11		7	Os07g0210300 in Cvrckova et al. 2012.		Os07g0210300/Os07g0210675  	LOC_Os07g10940.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20354	EXO70FX12	OsEXO70FX12, OsExo70FX12, OrysaFX12_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX12	exocyst subunit EXO70 family protein FX12	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX12		7			Os07g0210900	LOC_Os07g10960.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20355	EXO70FX13	OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX13	exocyst subunit EXO70 family protein FX13	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX13		4			Os04g0111500 	LOC_Os04g02070.1, LOC_Os04g02070.2, LOC_Os04g02070.3, LOC_Os04g02070.4				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20356	EXO70FX14	OsEXO70FX14, OsExo70FX14, OrysaFX14_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX14	exocyst subunit EXO70 family protein FX14	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX14		1			Os01g0905300 	LOC_Os01g67820.1				GO:0009753 - response to jasmonic acid stimulus, GO:0000145 - exocyst, GO:0006887 - exocytosis	TO:0000172 - jasmonic acid sensitivity	
20357	EXO70FX15	OsEXO70FX15, OsExo70FX15, OrysaFX15_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX15	exocyst subunit EXO70 family protein FX15	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX15		1			Os01g0905200 	LOC_Os01g67810.1				GO:0009753 - response to jasmonic acid stimulus, GO:0000145 - exocyst, GO:0006887 - exocytosis	TO:0000172 - jasmonic acid sensitivity	
20358	EXO70FX16	OsEXO70FX16, OsExo70FX16, OrysaFX16_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX16	exocyst subunit EXO70 family protein FX16	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX16		11	LOC_Os01g69280 (not found in MSU Rice Genome Annotation Project Release 7 data) in Synek et al. 2006. Os11g0650100 in Cvrckova et al. 2012.		Os11g0650100					GO:0000145 - exocyst, GO:0006887 - exocytosis		
20359	_	orfH79, ORFH79	_	cytotoxic protein ORFH79, mitochondrial chimeric gene orfH79	_		Mt	orfH79 is a a chimeric mitochondrial gene located downstream of atp6 gene.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root						GO:0006091 - generation of precursor metabolites and energy, GO:0000302 - response to reactive oxygen species, GO:0051881 - regulation of mitochondrial membrane potential, GO:0022900 - electron transport chain, GO:0009555 - pollen development, GO:0005739 - mitochondrion, GO:0006979 - response to oxidative stress, GO:0048364 - root development	TO:0000350 - cms-hl type, TO:0000053 - pollen sterility, TO:0000227 - root length, TO:0002657 - oxidative stress, TO:0000218 - pollen abortion type	PO:0001031 - 4 root elongation stage , PO:0001007 - pollen development stage 
20360	TS2	OsTS2	TASSELSEED-2	TASSELSEED2-like protein, sex determination protein TASSELSEED-2, TS2 homolog, a homolog of maize TASSELSEED-2	TASSELSEED-2		7	a momilactone biosynthetic gene.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility		LOC_Os07g46920				GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009695 - jasmonic acid biosynthetic process, GO:0009556 - microsporogenesis, GO:0002238 - response to molecule of fungal origin, GO:0007530 - sex determination	TO:0002668 - jasmonic acid content, TO:0000580 - cytoplasmic male sterility, TO:0000350 - cms-hl type	PO:0001007 - pollen development stage 
20361	_		_	a protein of unknown function			5	LOC_Os05g51540. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0593200 	LOC_Os05g51540.1				GO:0016021 - integral to membrane	TO:0000350 - cms-hl type	
20362	ETFBETA	ETFbeta, OsETFbeta	ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA	Electron transfer flavoprotein subunit, ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT Beta, ETF subunit Beta	ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA	etfbeta	4	Q7F9U3. GO:1901698: response to nitrogen compound. GO:0090427: activation of meiosis.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0182800 	LOC_Os04g10400.1				GO:0006995 - cellular response to nitrogen starvation, GO:0009055 - electron carrier activity, GO:0015996 - chlorophyll catabolic process, GO:0006552 - leucine catabolic process, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0055114 - oxidation reduction, GO:0007140 - male meiosis, GO:0007143 - female meiosis, GO:0048653 - anther development, GO:0048657 - tapetal cell differentiation, GO:0051321 - meiotic cell cycle, GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis, GO:0019740 - nitrogen utilization, GO:0009083 - branched chain family amino acid catabolic process, GO:0005759 - mitochondrial matrix	TO:0000485 - sterility related trait, TO:0000350 - cms-hl type, TO:0000420 - fertility related trait, TO:0000245 - pollen free, TO:0000437 - male sterility, TO:0000011 - nitrogen sensitivity, TO:0000421 - pollen fertility, TO:0002673 - amino acid content	PO:0009066 - anther , PO:0006010 - primary parietal cell , PO:0001004 - anther development stage , PO:0030056 - archesporial cell 
20363	_	P61	_	a subunit of the mitochondrial electron transport chain (ETC) complex III			7	LOC_Os07g48244.		Os07g0680300 	LOC_Os07g48244.1				GO:0016021 - integral to membrane		
20364	_		_	CDKA;1 homolog			3	LOC_Os03g01850.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0108800 	LOC_Os03g01850.1, LOC_Os03g01850.2				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding	TO:0000350 - cms-hl type	
20365	_	Pii	_	Pyricularia oryzae resistance-i, Magnaporthe grisea resistance-I Blast resistance I			9	AB820896 (Oryza sativa Japonica cv. Hitomebore). Nipponbare is known to lack Pii. Scrutiny of Os09g0327600 from Nipponbare showed that this gene encodes a truncated R-protein that is likely to be nonfunctional. The Nipponbare Os09g0327600 gene seems to have lost R-gene function by truncation of the region corresponding to the C-terminus of the protein.	 Tolerance and resistance - Disease resistance	Os09g0327575/Os09g0327600 	LOC_Os09g15840.1				GO:0009620 - response to fungus	TO:0000074 - blast disease	
20366	EXO70C2	OsEXO70C2, OsExo70C2, OrysaC2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C2	exocyst subunit EXO70 family protein C2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C2		11			Os11g0167600 	LOC_Os11g06700.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20367	EXO70X1	OsEXO70X1, OsExo70X1, OrysaX1_Exo70, OsEXO70E1, OsExo70E1, EXO70E1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X1	exocyst subunit EXO70 family protein X1, exocyst subunit EXO70 family protein E1	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X1		1	a rice homolog of AtEXO70E2. OsEXO70E1 in Guo et al. 2018, Ding et al. 2024.	 Tolerance and resistance - Insect resistance	Os01g0763750	LOC_Os01g55799.3, LOC_Os01g55799.2, LOC_Os01g55799.1				GO:0000145 - exocyst, GO:0002213 - defense response to insect, GO:0006887 - exocytosis, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
20368	EXO70X2	OsEXO70X2, OsExo70X2, OrysaX2_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X2	exocyst subunit EXO70 family protein X2	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X2		10	LOC_Os10g33850. pseudogene in Synek et al. 2006.			LOC_Os10g33850				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20369	EXO70X3	OsEXO70X3, OsExo70X3, OrysaX3_Exo70, OsEXO70FX16, EXO70FX16	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X3	exocyst subunit EXO70 family protein X3	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X3		7	pseudogene in Synek et al. 2006. OsEXO70FX16 in Ding et al. 2024.		Os07g0211000 	LOC_Os07g10970.1, LOC_Os07g10970.2				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20370	EXO70X4	OsEXO70X4, OsExo70X4, OrysaX4_Exo70, OsEXO70FX17, EXO70FX17	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X4	exocyst subunit EXO70 family protein X4	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X4		7	pseudogene in Synek et al. 2006. OsEXO70FX17 in Ding et al. 2024.		Os07g0210100	LOC_Os07g10920.1, LOC_Os07g10920.2, LOC_Os07g10920.3, LOC_Os07g10920.4				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20371	EXO70X5	OsEXO70X5, OsExo70X5, OrysaX5_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X5	exocyst subunit EXO70 family protein X5	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X5		1	LOC_Os01g56210. pseudogene in Synek et al. 2006.		Os01g0768032	LOC_Os01g56210.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20372	EXO70X6	OsEXO70X6, OsExo70X6, OrysaX6_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X6	exocyst subunit EXO70 family protein X6	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X6		5	LOC_Os05g30620. pseudogene in Synek et al. 2006.		Os05g0369100 	LOC_Os05g30620.1				GO:0000145 - exocyst, GO:0006887 - exocytosis		
20373	EXO70X7	OsEXO70X7, OsExo70X7, OrysaX7_Exo70	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X7	exocyst subunit EXO70 family protein X7	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X7		5	LOC_Os05g30680. pseudogene in Synek et al. 2006.		Os05g0369700 	LOC_Os05g30680.1				GO:0006887 - exocytosis, GO:0000145 - exocyst		
20374	RMT1	OsRMT1, OsRING362, RING362	RING FINGER PROTEIN WITH MICROTUBULE-TARGETING DOMAIN 1	RING finger protein with microtubule-targeting domain 1, RING-type E3 ubiquitin ligase 362	RING FINGER PROTEIN WITH MICROTUBULE-TARGETING DOMAIN 1		4	osa-miR530-5p target gene.	 Tolerance and resistance - Stress tolerance	Os04g0603200 	LOC_Os04g51400.5, LOC_Os04g51400.3, LOC_Os04g51400.2, LOC_Os04g51400.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005874 - microtubule, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
20375	_	OsDH1, DH1	_	dehydrogenase 1			8	LOC_Os08g43190.	 Biochemical character	Os08g0545200 	LOC_Os08g43190.1, LOC_Os08g43190.2				GO:0005737 - cytoplasm, GO:0009506 - plasmodesma, GO:0003939 - L-iditol 2-dehydrogenase activity, GO:0008270 - zinc ion binding		
20376	_	OsPB1, PB1	_	PB1 domain-containing protein			11	LOC_Os11g25780.		Os11g0444700	LOC_Os11g25780.1						
20377	LSC6	UGT, OsUFGT/Os3GT, OsUF3GT, OsUFGT, UFGT, OsLSC6, UF3GT	LEAF SHEATH COLOR 6	UDP-glycosyltransferase, UDP-glycosyl transferase, anthocyanidin 3-O-glucosyltransferase, leaf sheath color 6	UDP-GLUCOSE:FLAVONOID 3-O-GLUCOSYLTRANSFERASE		6	TO:0001109: grain color trait. OsUFGT/Os3GT in Mackon et al. 2021.	 Coloration - Anthocyanin,  Seed - Morphological traits,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed	Os06g0192100	LOC_Os06g09240.1				GO:0009409 - response to cold, GO:0009718 - anthocyanin biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0002724 - leaf sheath color, TO:0000071 - anthocyanin content, TO:0000303 - cold tolerance, TO:0000707 - pericarp color	
20378	F3H1	OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3	FLAVANONE 3-HYDROXYLASE 1	Flavanone 3-hydroxylase 1	FLAVANONE 3-HYDROXYLASE 1		4	CI252891. AL606999 (OSJNBa0084K01.10). GO:1900386: positive regulation of flavonol biosynthetic process. TO:0000739: shoot axis morphology trait. TO:0001109: grain color trait. OsF3H3 in Wang et al. 2022.	 Character as QTL - Yield and productivity,  Seed,  Biochemical character,  Tolerance and resistance - Insect resistance,  Seed - Morphological traits,  Vegetative organ - Culm,  Reproductive organ - panicle,  Coloration - Anthocyanin	Os04g0662600	LOC_Os04g56700.1				GO:0016491 - oxidoreductase activity, GO:0051555 - flavonol biosynthetic process, GO:0010224 - response to UV-B, GO:0009718 - anthocyanin biosynthetic process, GO:0045486 - naringenin 3-dioxygenase activity, GO:0002213 - defense response to insect, GO:0009698 - phenylpropanoid metabolic process, GO:0031542 - positive regulation of anthocyanin biosynthetic process, GO:0080141 - regulation of jasmonic acid biosynthetic process	TO:0000205 - white-backed planthopper resistance, TO:0000040 - panicle length, TO:0000495 - chlorophyll content, TO:0006005 - fructose content, TO:0000707 - pericarp color, TO:0000180 - spikelet fertility, TO:0000590 - grain weight, TO:0000300 - glucose content, TO:0000328 - sucrose content, TO:0000207 - plant height, TO:0000071 - anthocyanin content, TO:0000290 - flavonoid content	PO:0009010 - seed 
20379	F3H2	OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8	FLAVANONE 3-HYDROXYLASE 2	Flavanone 3-hydroxylase 2, SA hydroxylase 4, salicylic acid hydroxylase 4	FLAVANONE 3-HYDROXYLASE 2		10	Q8W2X5. TO:0001109: grain color trait. FNS1 in Liu et al. 2020. OsF3H8 in Wang et al. 2022.	 Biochemical character,  Coloration,  Seed - Morphological traits,  Coloration - Anthocyanin,  Seed	Os10g0536400	LOC_Os10g39140.2, LOC_Os10g39140.3, LOC_Os10g39140.4, LOC_Os10g39140.1				GO:0048316 - seed development, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0051553 - flavone biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0046244 - salicylic acid catabolic process, GO:0009718 - anthocyanin biosynthetic process, GO:0051555 - flavonol biosynthetic process	TO:0000290 - flavonoid content, TO:0000653 - seed development trait	PO:0009006 - shoot system , PO:0001170 - seed development stage 
20380	F3H3	OsF3H-3, F3H-3, OsF3H3, OsF3H4, F3H4	FLAVANONE 3-HYDROXYLASE 3	Flavanone 3-hydroxylase 3	FLAVANONE 3-HYDROXYLASE 3		4	OsF3H4 in Wang et al. 2022.	 Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Biochemical character	Os04g0667200	LOC_Os04g57160.2, LOC_Os04g57160.1				GO:0009718 - anthocyanin biosynthetic process, GO:0051555 - flavonol biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009066 - anther 
20382	PKS8	OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, OsCHS8, CHS8	POLYKETIDE SYNTHASE 8	chalcone synthase 2, polyketide synthase 8, Chalcone synthase 8	POLYKETIDE SYNTHASE 8		7	Q8H4L3. OsCHS8 in Park et al. 2020, Wang et al. 2022. CHS2 in Oshima et al. 2019. GO:0102128: chalcone synthase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Coloration - Anthocyanin	Os07g0214900	LOC_Os07g11440.1				GO:0009411 - response to UV, GO:0009718 - anthocyanin biosynthetic process, GO:0016210 - naringenin-chalcone synthase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000172 - jasmonic acid sensitivity, TO:0000290 - flavonoid content, TO:0000160 - UV light sensitivity	
20384	_	Kala1	_	Key gene for black coloration by anthocyanin accumulation on chromosome 1			1	Kala3 was mapped between RM7405 and RM7419 on chromosome 1, and it appears likely that Kala1 is Rd/DFR (Os01g0633500) (Maeda et al. 2014).	 Seed,  Coloration - Anthocyanin						GO:0031542 - positive regulation of anthocyanin biosynthetic process	TO:0000071 - anthocyanin content, TO:0000707 - pericarp color	
20385	_	OsLTPL36, LTPL36	_				3	non-specific lipid transfer protein. LOC_Os03g25350.	 Seed - Morphological traits - Endosperm,  Biochemical character,  Seed,  Seed - Physiological traits - Storage substances,  Seed - Physiological traits - Taste,  Character as QTL - Yield and productivity	Os03g0369100 	LOC_Os03g25350.1				GO:0009845 - seed germination, GO:0009790 - embryonic development, GO:0048316 - seed development	TO:0000266 - chalky endosperm, TO:0000280 - seedling vigor, TO:0000620 - embryo development trait, TO:0000604 - fat and essential oil content, TO:0000382 - 1000-seed weight, TO:0000180 - spikelet fertility, TO:0000162 - seed quality, TO:0000653 - seed development trait	PO:0007631 - plant embryo stage , PO:0009088 - seed coat , PO:0007057 - 0 seed germination stage , PO:0001170 - seed development stage , PO:0005360 - aleurone layer 
20386	_	OsRPK2, RPK2	_	receptor protein kinase 2			9	LOC_Os09g19390. Os09g0358600 in RAP3 (RapDB build 5).	 Tolerance and resistance - Stress tolerance		LOC_Os09g19390				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20387	RPK3	OsRPK3, OsMRLK63, MRLK63, OsCBM1, CBM1, OsMRLP15, MRLP15	RECEPTOR PROTEIN KINASE 3	receptor protein kinase 3, malectin/malectin-like receptor-like kinase 63, Carbohydrate-Binding Malectin-Like Protein 1, Carbohydrate-binding malectin/malectin-like domain-containing protein 1, malectin/malectin-like receptor-like protein 15	RECEPTOR PROTEIN KINASE 3		9	OsMRLP15 (OsCBM1) in Jiang et al. 2021. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os09g0358700 	LOC_Os09g19400.1				GO:0009408 - response to heat, GO:0050665 - hydrogen peroxide biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0010118 - stomatal movement, GO:0030104 - water homeostasis, GO:0009414 - response to water deprivation	TO:0000522 - stomatal conductance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0001015 - photosynthetic rate, TO:0000447 - filled grain number, TO:0000547 - primary branch number, TO:0000566 - stomatal frequency, TO:0001018 - transpiration rate, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000259 - heat tolerance, TO:0000520 - stomatal closure rate, TO:0000014 - panicle weight, TO:0000040 - panicle length	PO:0025034 - leaf 
20388	MTATPS1	OsmtATPS1, mtATPS1	MITOCHONDRIAL PROTON-TRANSPORTING ATP SYNTHASE 1	mitochondrial proton-transporting ATP synthase 1	MITOCHONDRIAL PROTON-TRANSPORTING ATP SYNTHASE 1		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0117100 	LOC_Os04g02670.1				GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0015986 - ATP synthesis coupled proton transport, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
20389	_	OsTPP1, TPP1	_	transposon gene 1			8	LOC_Os08g20486. Os08g0299800 in  RAP2 (RapDB build4).	 Tolerance and resistance - Stress tolerance		LOC_Os08g20486				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20390	_	OsTPP2, TPP2	_	transposon gene 2			10	LOC_Os10g20280. Os10g0343600 in  RAP2 (RapDB build4).	 Tolerance and resistance - Stress tolerance		LOC_Os10g20280				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20391	_	OsRTPP1, RTPP1	_	retrotransposon gene 1			11	LOC_Os11g02220.	 Tolerance and resistance - Stress tolerance	Os11g0113500 	LOC_Os11g02220.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20392	_	OsRPP14.1, RPP14.1	_	RPP14-family protein 1			5	LOC_Os05g18780.	 Tolerance and resistance - Stress tolerance	Os05g0270500 	LOC_Os05g18780.1				GO:0004526 - ribonuclease P activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20393	_	OsSLPP1, SLPP1	_	subtilisin-like protease precursor 1			4	LOC_Os04g02970.	 Tolerance and resistance - Stress tolerance	Os04g0120100 	LOC_Os04g02970.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20394	PGK1	OsPGK1	PHOSPHOGLYCERATE KINASE 1	Phosphoglycerate kinase 1, Phosphoglycerate kinase-1	PHOSPHOGLYCERATE KINASE 1		1	LOC_Os01g58610.	 Biochemical character	Os01g0800266 	LOC_Os01g58610.1				GO:0009507 - chloroplast, GO:0004618 - phosphoglycerate kinase activity, GO:0006096 - glycolysis		
20395	PGK3	OsPGK3, OsPGK3a, OsPGK3b, OsPGK3c	PHOSPHOGLYCERATE KINASE 3	Phosphoglycerate kinase 3, Phosphoglycerate kinase-3	PHOSPHOGLYCERATE KINASE 3		5	LOC_Os05g41640.	 Biochemical character	Os05g0496200 	LOC_Os05g41640.1, LOC_Os05g41640.2, LOC_Os05g41640.3				GO:0004618 - phosphoglycerate kinase activity, GO:0006096 - glycolysis, GO:0009507 - chloroplast		
20396	PIMT1	OsPIMT1, OsPIMT1'	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 1	Protein repair L-isoaspartyl methyltransferase 1, PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE  1, L-isoaspartylmethyltransferase 1	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 1		8	KM527502. GO:2000377 regulation of reactive oxygen species metabolic process. TO:0000931: seed quality trait.	 Seed - Physiological traits,  Biochemical character,  Seed - Physiological traits - Longevity	Os08g0557000	LOC_Os08g44280.1, LOC_Os08g44280.2				GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0007568 - aging, GO:0009845 - seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0048316 - seed development, GO:0030091 - protein repair, GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	TO:0000345 - seed viability, TO:0000435 - seed longevity, TO:0000430 - germination rate, TO:0000653 - seed development trait, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage , PO:0001170 - seed development stage , PO:0009009 - plant embryo , PO:0009089 - endosperm 
20397	PIMT2	OsPIMT2, OsPIMT2'-1, OsPIMT2'-2, deltaOsPIMT2	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2	Protein repair L-isoaspartyl methyltransferase 2, PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE 2	PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2		8	KM675736. LOC_Os04g40540. GO:2000377 regulation of reactive oxygen species metabolic process.	 Seed - Physiological traits - Longevity,  Biochemical character	Os04g0481400	LOC_Os04g40540.1, LOC_Os04g40540.2, LOC_Os04g40540.3				GO:0030091 - protein repair, GO:0009845 - seed germination, GO:0004719 - protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, GO:0048316 - seed development, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus	TO:0000345 - seed viability, TO:0000435 - seed longevity, TO:0000615 - abscisic acid sensitivity, TO:0000653 - seed development trait	PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0007057 - 0 seed germination stage , PO:0001170 - seed development stage 
20398	JMT1	OsJMT1, JAMT1, OsJAMT1	JASMONIC ACID CARBOXYL METHYLTRANSFERASE 1	Jasmonic acid carboxyl methyltransferase 1	JASMONIC ACID CARBOXYL METHYLTRANSFERASE 1		5	SABATH methyltransferase Group A1. AK240953. 	 Tolerance and resistance - Insect resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity	Os05g0102000	LOC_Os05g01140.1				GO:0042538 - hyperosmotic salinity response, GO:0006612 - protein targeting to membrane, GO:0010363 - regulation of plant-type hypersensitive response, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009620 - response to fungus, GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0002213 - defense response to insect, GO:0009408 - response to heat, GO:0009695 - jasmonic acid biosynthetic process, GO:0009723 - response to ethylene stimulus, GO:0009733 - response to auxin stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009863 - salicylic acid mediated signaling pathway, GO:0008168 - methyltransferase activity, GO:0009414 - response to water deprivation	TO:0000207 - plant height, TO:0002668 - jasmonic acid content, TO:0000276 - drought tolerance, TO:0000371 - yield trait, TO:0000396 - grain yield, TO:0000259 - heat tolerance, TO:0000424 - brown planthopper resistance, TO:0000357 - growth and development trait	
20399	ALAAT2	OsAlaAT2, AlaAT2	ALANINE AMINOTRANSFERASE 2	Alanine transaminase 2, alanine-aminotransferase2	ALANINE AMINOTRANSFERASE 2		3	LOC_Os03g08530. 	 Biochemical character	Os03g0183600 	LOC_Os03g08530.1						
20400	ALAAT3	OsAlaAT3, AlaAT3	ALANINE AMINOTRANSFERASE 3	Alanine transaminase 3, alanine-aminotransferase3	ALANINE AMINOTRANSFERASE 3		7	LOC_Os07g42600. 	 Biochemical character	Os07g0617800 	LOC_Os07g42600.1				GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding, GO:0009058 - biosynthetic process		
20401	ALAAT4	OsAlaAT4, AlaAT4	ALANINE AMINOTRANSFERASE 4	Alanine transaminase 4, alanine-aminotransferase4	ALANINE AMINOTRANSFERASE 4		10	LOC_Os10g25140. 	 Biochemical character	Os10g0390600	LOC_Os10g25140.1				GO:0009058 - biosynthetic process, GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding		
20402	SLAC1	OsSLAC1, OsSLAH1, SLAH1	SLOW ANION CHANNEL 1	S-type anion channel 1, slow anion channel 1, slow-type anion channel 1, Slow-Type Anion Channel-Associated Homolog 1	SLOW ANION CHANNEL 1	slac1	4	rice ortholog of AtOST1. a nitrate-selective anion channel. a guard cell anion channel protein. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait. GO:0090333: regulation of stomatal closure.	 Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0574700	LOC_Os04g48530.1				GO:0006873 - cellular ion homeostasis, GO:0050891 - multicellular organismal water homeostasis, GO:0006863 - purine transport, GO:0008308 - voltage-gated anion channel activity, GO:0005886 - plasma membrane, GO:0010119 - regulation of stomatal movement, GO:0009270 - response to humidity, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0010037 - response to carbon dioxide, GO:0015711 - organic anion transport, GO:0006821 - chloride transport, GO:0030104 - water homeostasis, GO:0010374 - stomatal complex development, GO:0010193 - response to ozone, GO:0010109 - regulation of photosynthesis, GO:0010118 - stomatal movement, GO:0006814 - sodium ion transport, GO:0010233 - phloem transport, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0000131 - leaf water potential, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance	PO:0020104 - leaf sheath , PO:0000293 - guard cell , PO:0025034 - leaf 
20403	_	HT1	_				6	rice orthologue gene of HT1. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait. 	 Tolerance and resistance - Stress tolerance	Os06g0636600 	LOC_Os06g43030.1				GO:0004674 - protein serine/threonine kinase activity, GO:0010037 - response to carbon dioxide, GO:0010118 - stomatal movement, GO:0010374 - stomatal complex development, GO:0005524 - ATP binding	TO:0000522 - stomatal conductance	
20404	STOMAGEN	OsSTOMAGEN, OsEPFL9, EPFL9, OsEPFL10, EPFL10	STOMAGEN	Epidermal Patterning Factor like-9	STOMAGEN	stomagen	1	PDB: 2LIY. rice orthologue gene of STOMAGEN. A. thaliana EPFL9  orthologue in rice. OsEPFL10 in Guo et al. 2023. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait. GO:2000123: positive regulation of stomatal complex development.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0914400 	LOC_Os01g68598.2, LOC_Os01g68598.1				GO:0010052 - guard cell differentiation, GO:0010374 - stomatal complex development, GO:0016556 - mRNA modification, GO:0030104 - water homeostasis, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0007267 - cell-cell signaling, GO:0008544 - epidermis development, GO:0010375 - stomatal complex patterning, GO:0001659 - temperature homeostasis	TO:0000136 - relative water content, TO:0000566 - stomatal frequency, TO:0000504 - leaf temperature, TO:0000522 - stomatal conductance	
20405	_	OscZOG1, cZOG1	_	zeatin O-glucosyltransferase 1, cis-zeatin O-glucosyltransferase 1	_		4	LOC_Os04g20330.	 Character as QTL - Yield and productivity,  Biochemical character,  Vegetative organ - Root	Os04g0271700 	LOC_Os04g20330.1				GO:0005737 - cytoplasm, GO:0048527 - lateral root development, GO:0048367 - shoot development, GO:0048364 - root development, GO:0033399 - cis-zeatin metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0005634 - nucleus	TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0000391 - seed size, TO:0000346 - tiller number, TO:0000656 - root development trait, TO:0000654 - shoot development trait, TO:0001012 - lateral root length, TO:0001013 - lateral root number, TO:0000447 - filled grain number, TO:0000329 - tillering ability, TO:0000050 - inflorescence branching	PO:0006085 - root meristem , PO:0006079 - shoot meristem , PO:0007520 - root development stage , PO:0007089 - stem elongation stage 
20406	CZOGT1	OscZOGT1, cZOGT1	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 1	cis-zeatin O-glucosyltransferase 1, cZ-O-glucosyltransferase 1	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 1		4		 Vegetative organ - Root,  Biochemical character,  Vegetative organ - Leaf	Os04g0556500	LOC_Os04g46980.1				GO:0010150 - leaf senescence, GO:0048364 - root development, GO:0048367 - shoot development, GO:0048527 - lateral root development, GO:0033399 - cis-zeatin metabolic process, GO:0016758 - transferase activity, transferring hexosyl groups	TO:0000495 - chlorophyll content, TO:0002685 - crown root number, TO:0000249 - leaf senescence, TO:0000654 - shoot development trait, TO:0000656 - root development trait, TO:0000077 - shoot anatomy and morphology trait	PO:0007520 - root development stage , PO:0007112 - 1 main shoot growth stage 
20407	CZOGT2	OscZOGT2, cZOGT2	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 2	cis-zeatin O-glucosyltransferase 2, cZ-O-glucosyltransferase 2	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 2		4		 Vegetative organ - Leaf,  Biochemical character,  Vegetative organ - Root	Os04g0556600	LOC_Os04g46990.1				GO:0033399 - cis-zeatin metabolic process, GO:0048367 - shoot development, GO:0010150 - leaf senescence, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0048527 - lateral root development, GO:0048364 - root development	TO:0002685 - crown root number, TO:0000656 - root development trait, TO:0000077 - shoot anatomy and morphology trait, TO:0000654 - shoot development trait, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content	PO:0007520 - root development stage , PO:0007112 - 1 main shoot growth stage 
20408	CZOGT3	OscZOGT3, cZOGT3, UCIP7, OsUCIP7	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3	cis-zeatin O-glucosyltransferase 3, cZ-O-glucosyltransferase 3, OsUBC26 Interact Protein 7	CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3		4		 Biochemical character	Os04g0565400	LOC_Os04g47770.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008194 - UDP-glycosyltransferase activity		
20409	_	OsMTL1, MTL1	_	METALLOTHIONEIN-LIKE PROTEIN 1			12		 Vegetative organ - Root	Os12g0568350							PO:0009005 - root 
20410	_	OsGRP7, GRP7	_	GLYCINE-RICH PROTEIN 7			10		 Vegetative organ - Root	Os10g0453900	LOC_Os10g31640.1						PO:0009005 - root 
20411	_	OsRSP3, RSP3	_	root-specific unknown protein 3			2		 Vegetative organ - Root	Os02g0584200	LOC_Os02g37260.1						PO:0009005 - root 
20412	_	40SRPS, OsRbs5, Rbs5	_	40S ribosomal protein			7		 Tolerance and resistance - Disease resistance	Os07g0616600	LOC_Os07g42450.1				GO:0050832 - defense response to fungus, GO:0000028 - ribosomal small subunit assembly, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome	TO:0000048 - kernel smut disease resistance	
20413	_	OsXA21-C9, XA21-C9	_	OsXA21-like gene			9			Os09g0423000					GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
20414	ASMT4	ZRP4, OsASMT4, OsCOMT9, COMT9	ACETYL-SEROTONIN METHYLTRANSFERASE 4	O-methyltransferase ZRP4, acetyl-serotonin methyltransferase 4, Caffeic Acid O-Methyltransferase 9	ACETYL-SEROTONIN METHYLTRANSFERASE 4		5	one of the two candidate genes for qCTR5 (QTL for spikelet fertility at low temperature on chromosomes 5).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0515600	LOC_Os05g43940.1				GO:0046983 - protein dimerization activity, GO:0007623 - circadian rhythm, GO:0009646 - response to absence of light, GO:0009809 - lignin biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0019438 - aromatic compound biosynthetic process, GO:0005737 - cytoplasm, GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content	PO:0009047 - stem 
20415	_		_	Beta-1, 3-glucanase-like protein			5	one of the two candidate genes for qCTR5 (QTL for spikelet fertility at low temperature on chromosomes 5).	 Biochemical character	Os05g0535100	LOC_Os05g45860.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
20416	_	qCTR12	_	conserved hypothetical protein			12	the candidate gene for qCTR12 (QTL for spikelet fertility at low temperature on chromosomes 12).		Os12g0550600					GO:0016021 - integral to membrane		
20417	_	OsTMEM18, TMEM18	_	Transmembrane Protein 18, AtTMEM18-homologous protein			5			Os05g0432500	LOC_Os05g35720.1				GO:0016021 - integral to membrane		
20418	SLC1	OsSLC1, GA20OX7, OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4	SLENDER AND CRINKLY LEAF 1	GIBBERELLIN 20-OXIDASE 7, rice GA 20-oxidase7, GA 20-oxidase 7, gibberellin C-20 oxidase 7, Gibberellin-20 oxidase 7, 2-oxoglutarate-dependent dioxygenase 4, gibberellin 20 oxidase 2	GIBBERELLIN 20-OXIDASE 7	slc1, slc1-4, slc1-7	8	gibberellin 20 oxidase 2 in Ma et al. 2023. PO:0025570: vascular leaf development stage. TO:0000748: leaf morphology trait. TO:0000905: seed yield trait.	 Biochemical character,  Vegetative organ - Culm,  Seed,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf	Os08g0560000 	LOC_Os08g44590.1				GO:0048316 - seed development, GO:0009686 - gibberellin biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding, GO:0048364 - root development, GO:0009697 - salicylic acid biosynthetic process, GO:0048366 - leaf development, GO:0048367 - shoot development, GO:0051607 - defense response to virus	TO:0002675 - gibberellic acid content, TO:0000148 - viral disease resistance, TO:0000207 - plant height, TO:0000370 - leaf width, TO:0000241 - leaf number, TO:0000655 - leaf development trait, TO:0000227 - root length	PO:0001031 - 4 root elongation stage , PO:0025527 - shoot system development stage , PO:0001170 - seed development stage 
20419	ATR	OsATR	ATM-RAD3-RELATED PROTEIN	ATR homolog, ATM-rad3-related protein	ATM-RAD3-RELATED PROTEIN		6	Q5Z987. Phosphatidylinositol kinase and FAT containing domain protein. an OsAM1-responsive rice meiotic gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os06g0724700 	LOC_Os06g50910.1, LOC_Os06g50910.2, LOC_Os06g50910.3				GO:0005634 - nucleus, GO:0016301 - kinase activity, GO:0007126 - meiosis, GO:0007049 - cell cycle, GO:0005524 - ATP binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0004674 - protein serine/threonine kinase activity, GO:0046686 - response to cadmium ion		
20420	ATM	OsATM	ATAXIA TELANGIECTASIA-MUTATED GENE	ATM homolog, ATR-mediated signaling response	ATAXIA TELANGIECTASIA-MUTATED PROTEIN	Osatm, Osatm-1, Osatm-2, Osatm-3	1	phosphatidylinositol 3- and 4-kinase family protein. an OsAM1-responsive rice meiotic gene. GO:0090399: replicative senescence. GO:1990918: double-strand break repair involved in meiotic recombination.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os01g0106700	LOC_Os01g01689.1, LOC_Os01g01689.3				GO:0000077 - DNA damage checkpoint, GO:0016572 - histone phosphorylation, GO:0016301 - kinase activity, GO:0010212 - response to ionizing radiation, GO:0007126 - meiosis, GO:0006974 - response to DNA damage stimulus, GO:0006302 - double-strand break repair, GO:0005524 - ATP binding, GO:0000723 - telomere maintenance, GO:0004674 - protein serine/threonine kinase activity, GO:0000724 - double-strand break repair via homologous recombination	TO:0000696 - starch content, TO:0000053 - pollen sterility, TO:0002759 - grain number	
20421	_		_	RMI1 homolog			4	LOC_Os04g32090. Q7XRV0. an OsAM1-responsive rice meiotic gene. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os04g0391000 	LOC_Os04g32090.1				GO:0048451 - petal formation, GO:0000166 - nucleotide binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0007126 - meiosis, GO:0048453 - sepal formation		
20422	_		_	MPA1 homolog			8	LOC_Os08g44860. B7EA73. aminopeptidase. an OsAM1-responsive rice meiotic gene. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os08g0562700	LOC_Os08g44860.1, LOC_Os08g44860.2, LOC_Os08g44860.3, LOC_Os08g44860.4, LOC_Os08g44860.5, LOC_Os08g44860.6, LOC_Os08g44860.7, LOC_Os08g44860.8				GO:0008270 - zinc ion binding, GO:0007126 - meiosis, GO:0004177 - aminopeptidase activity, GO:0008237 - metallopeptidase activity		
20423	_	sudA	_	SMC3 homolog, chromosome segregation protein sudA			2	LOC_Os02g04080. an OsAM1-responsive rice meiotic gene. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0133400 	LOC_Os02g04060.1, LOC_Os02g04080.1				GO:0003682 - chromatin binding, GO:0006281 - DNA repair, GO:0005524 - ATP binding, GO:0007126 - meiosis, GO:0007064 - mitotic sister chromatid cohesion, GO:0008280 - cohesin core heterodimer		
20424	SYP121	OsSYP121	SYNTAXIN OF PLANTS 121	PSY1 homolog, syntaxin, Syntaxin of Plants121	SYNTAXIN OF PLANTS 121		3	an OsAM1-responsive rice meiotic gene. GO:0061025: membrane fusion.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0787000	LOC_Os03g57310.1				GO:0006887 - exocytosis, GO:0048278 - vesicle docking, GO:0031201 - SNARE complex, GO:0005622 - intracellular, GO:0050832 - defense response to fungus, GO:0007126 - meiosis, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding, GO:0006906 - vesicle fusion, GO:0016192 - vesicle-mediated transport, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system	TO:0000074 - blast disease	PO:0025034 - leaf , PO:0020104 - leaf sheath 
20425	SNDP5	OsSNDP5, OsSec14-2, Sec14-2	SEC14-NODULIN DOMAIN PROTEIN 5	SPO20 homolog, Sec14-nodulin domain protein 5, Sec14-nodulin domain-containing protein 5, SEC14 domain protein 2, Sec14 protein 2	SEC14-NODULIN DOMAIN PROTEIN 5		1	phosphatidylinositol transfer protein. Class III SEC14. an OsAM1-responsive rice meiotic gene. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os01g0701900 	LOC_Os01g50616.1, LOC_Os01g50616.2				GO:0016021 - integral to membrane, GO:0007126 - meiosis		
20426	_	APC7, OsAPC7	_	tetratricopeptide repeat domain containing protein, ANAPHASE-PROMOTING COMPLEX 7			5	LOC_Os05g05720. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0149900	LOC_Os05g05720.1, LOC_Os05g05720.2				GO:0032204 - regulation of telomere maintenance, GO:0010413 - glucuronoxylan metabolic process, GO:0000278 - mitotic cell cycle, GO:0009410 - response to xenobiotic stimulus, GO:0043687 - post-translational protein modification, GO:0006396 - RNA processing, GO:0007062 - sister chromatid cohesion, GO:0016579 - protein deubiquitination, GO:0043247 - telomere maintenance in response to DNA damage, GO:0009640 - photomorphogenesis, GO:0008284 - positive regulation of cell proliferation, GO:0045132 - meiotic chromosome segregation, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0045492 - xylan biosynthetic process, GO:0032875 - regulation of DNA endoreduplication, GO:0051302 - regulation of cell division, GO:0007126 - meiosis, GO:0031048 - chromatin silencing by small RNA, GO:0010388 - cullin deneddylation, GO:0042023 - DNA endoreduplication, GO:0007276 - gamete generation, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0007131 - reciprocal meiotic recombination, GO:0016571 - histone methylation, GO:0051788 - response to misfolded protein, GO:0043248 - proteasome assembly, GO:0051510 - regulation of unidimensional cell growth, GO:0010332 - response to gamma radiation, GO:0042138 - meiotic DNA double-strand break formation		
20427	_		_	Peptidase family C50			2	LOC_Os02g53120. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0770700 	LOC_Os02g53120.1				GO:0009887 - organ morphogenesis, GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition, GO:0009826 - unidimensional cell growth, GO:0010090 - trichome morphogenesis, GO:0007129 - synapsis, GO:0010182 - sugar mediated signaling, GO:0051225 - spindle assembly, GO:0009845 - seed germination, GO:0010162 - seed dormancy, GO:0050826 - response to freezing, GO:0010389 - regulation of G2/M transition of mitotic cell cycle, GO:0009909 - regulation of flower development, GO:0006275 - regulation of DNA replication, GO:0045595 - regulation of cell differentiation, GO:0016567 - protein ubiquitination, GO:0010072 - primary shoot apical meristem specification, GO:0045876 - positive regulation of sister chromatid cohesion, GO:0006312 - mitotic recombination, GO:0051307 - meiotic chromosome separation, GO:0019915 - lipid storage, GO:0016572 - histone phosphorylation, GO:0051567 - histone H3-K9 methylation, GO:0009960 - endosperm development, GO:0009880 - embryonic pattern specification, GO:0006302 - double-strand break repair, GO:0000911 - cytokinesis by cell plate formation, GO:0048825 - cotyledon development, GO:0008233 - peptidase activity, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043247 - telomere maintenance in response to DNA damage, GO:0042138 - meiotic DNA double-strand break formation, GO:0042023 - DNA endoreduplication, GO:0032204 - regulation of telomere maintenance, GO:0031048 - chromatin silencing by small RNA, GO:0010332 - response to gamma radiation, GO:0009640 - photomorphogenesis, GO:0008284 - positive regulation of cell proliferation, GO:0007131 - reciprocal meiotic recombination, GO:0007126 - meiosis, GO:0007062 - sister chromatid cohesion, GO:0006396 - RNA processing		
20428	_	APC5, OsAPC5	_	ANAPHASE PROMOTING COMPLEX 5			12	LOC_Os12g43120. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0626300 	LOC_Os12g43120.1, LOC_Os12g43120.2				GO:0032875 - regulation of DNA endoreduplication, GO:0007276 - gamete generation, GO:0007126 - meiosis, GO:0043248 - proteasome assembly, GO:0051302 - regulation of cell division, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0051510 - regulation of unidimensional cell growth, GO:0051788 - response to misfolded protein, GO:0042023 - DNA endoreduplication		
20429	_	APC10	_	anaphase-promoting complex subunit 10, ANAPHASE PROMOTING COMPLEX 10			5	LOC_Os05g50360. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0579800 	LOC_Os05g50360.1				GO:0051788 - response to misfolded protein, GO:0051510 - regulation of unidimensional cell growth, GO:0043248 - proteasome assembly, GO:0007126 - meiosis, GO:0007276 - gamete generation, GO:0042023 - DNA endoreduplication, GO:0051301 - cell division, GO:0016604 - nuclear body, GO:0005680 - anaphase-promoting complex, GO:0030071 - regulation of mitotic metaphase/anaphase transition, GO:0010087 - phloem or xylem histogenesis, GO:0032876 - negative regulation of DNA endoreduplication, GO:0007067 - mitosis, GO:0008283 - cell proliferation, GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process		
20430	_		_	expressed protein			2	LOC_Os02g07240. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0168900	LOC_Os02g07240.1				GO:0007126 - meiosis		
20432	_	RAD23	_	RAD23 DNA repair protein			8	LOC_Os08g33340. a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os08g0430200 	LOC_Os08g33340.1, LOC_Os08g33340.2				GO:0005634 - nucleus, GO:0003684 - damaged DNA binding, GO:0006289 - nucleotide-excision repair, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0007126 - meiosis		
20433	MSH3	OsMSH3	MUTATED S HOMOLOGUE 3	DNA mismatch repair protein MSH3, Mutated S homologue 3	MUTATED S HOMOLOGUE 3	msh3, Osmsh3	4	a putative meiosis-related gene.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os04g0682900 	LOC_Os04g58630.2, LOC_Os04g58630.3				GO:0007129 - synapsis, GO:0032300 - mismatch repair complex, GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0051726 - regulation of cell cycle, GO:0003684 - damaged DNA binding, GO:0007126 - meiosis, GO:0005524 - ATP binding, GO:0030983 - mismatched DNA binding, GO:0006298 - mismatch repair, GO:0048522 - positive regulation of cellular process, GO:0009410 - response to xenobiotic stimulus		
20434	_		_	SLG7-like1			3	LOC_Os03g30530.		Os03g0418700 	LOC_Os03g30530.1, LOC_Os03g30530.2, LOC_Os03g30530.3						
20435	_		_	SLG7-like2			7	LOC_Os07g01860.		Os07g0109400	LOC_Os07g01860.1						
20436	WNK1	OsWNK1	WITH NO LYSINE KINASE 1	With No Lysine kinase 1, WNK protein kinase 1, WNK kinase 1	WITH NO LYSINE KINASE 1		7	Q0D598. A2YMV6. DQ837532.	 Tolerance and resistance - Stress tolerance	Os07g0572800	LOC_Os07g38530.1, LOC_Os07g38530.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0007623 - circadian rhythm, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009416 - response to light stimulus	TO:0000276 - drought tolerance, TO:0000075 - light sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
20437	WNK2	OsWNK2	WITH NO LYSINE KINASE 2	With No Lysine kinase 2, WNK protein kinase 2, WNK kinase 2	WITH NO LYSINE KINASE 2		5	Q65X23.	 Tolerance and resistance - Stress tolerance	Os05g0108300	LOC_Os05g01780.1, LOC_Os05g01780.2				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
20438	WNK3	OsWNK3	WITH NO LYSINE KINASE 3	With No Lysine kinase 3, WNK protein kinase 3, WNK kinase 3	WITH NO LYSINE KINASE 3		7	Q0D847.	 Tolerance and resistance - Stress tolerance	Os07g0185000	LOC_Os07g08750.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
20439	WNK4	OsWNK4	WITH NO LYSINE KINASE 4	With No Lysine kinase 4, WNK protein kinase 4, WNK kinase 4	WITH NO LYSINE KINASE 4		2	Q6EU49.		Os02g0672800	LOC_Os02g45130.1, LOC_Os02g45130.2				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
20440	WNK5	OsWNK5	WITH NO LYSINE KINASE 5	With No Lysine kinase 5, WNK protein kinase 5, WNK kinase 5	WITH NO LYSINE KINASE 5		7	Q0D541.	 Tolerance and resistance - Stress tolerance	Os07g0584100	LOC_Os07g39520.1				GO:0009651 - response to salt stress, GO:0010260 - organ senescence, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0006001 - salt tolerance	
20441	WNK6	OsWNK6	WITH NO LYSINE KINASE 6	With No Lysine kinase 6, WNK protein kinase 6, WNK kinase 6	WITH NO LYSINE KINASE 6		11	Q2RA93.	 Tolerance and resistance - Stress tolerance	Os11g0160300	LOC_Os11g06140.1				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
20442	WNK7	OsWNK7	WITH NO LYSINE KINASE 7	With No Lysine kinase 7, WNK protein kinase 7, WNK kinase 7	WITH NO LYSINE KINASE 7		11	Q2RBE3.	 Tolerance and resistance - Stress tolerance	Os11g0114600	LOC_Os11g02300.1, LOC_Os11g02300.2, LOC_Os11g02305.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
20443	WNK8	OsWNK8, STE20/MAPK3, STE20, MAPK3, OsSTE20, OsMAPK3	WITH NO LYSINE KINASE 8	With No Lysine kinase 8, WNK protein kinase 8, WNK kinase 8	WITH NO LYSINE KINASE 8		12	Q2QYL8.	 Tolerance and resistance - Stress tolerance	Os12g0114100	LOC_Os12g02250.1				GO:0009408 - response to heat, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf 
20444	WNK9	OsWNK9	WITH NO LYSINE KINASE 9	With No Lysine kinase 9, WNK protein kinase 9, WNK kinase 9	WITH NO LYSINE KINASE 9		12	Q2QXC6.	 Tolerance and resistance - Stress tolerance	Os12g0162100	LOC_Os12g06490.1, LOC_Os12g06490.2				GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
20445	GOLS1	OsGolS1, GolS1, OsGolS2, GolS2	GALACTINOL SYNTHASE 1	galactinol synthase 1, galactinol synthase 2	GALACTINOL SYNTHASE 1		3	GolS2 homologue in Wang et al. 2016. PO:0030123: panicle inflorescence. GolS2 in Kong et al. 2019.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0316200	LOC_Os03g20120.1				GO:0009414 - response to water deprivation, GO:0048511 - rhythmic process, GO:0047216 - inositol 3-alpha-galactosyltransferase activity, GO:0009609 - response to symbiotic bacterium, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0006970 - response to osmotic stress, GO:0009751 - response to salicylic acid stimulus, GO:0006012 - galactose metabolic process	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait, TO:0000095 - osmotic response sensitivity	PO:0020104 - leaf sheath , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
20446	_	CCR1, OsCCR1, OsCCR14, CCR14	_	Cinnamoyl-CoA Reductase 1, CCR-like 1, Cinnamoyl-CoA reductase 14			9	LOC_Os09g31514.	 Biochemical character	Os09g0491852 	LOC_Os09g31514.1, LOC_Os09g31514.2, LOC_Os09g31514.3, LOC_Os09g31514.4				GO:0009809 - lignin biosynthetic process, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding		
20447	WAHD1	OsWAHD1	WALL-ASSOCIATED HOMEOOMAIN PROTEIN 1	BLH6-like 2, BEL1-LIKE HOMEODOMAIN6-like 2, Wall-Associated Homeoomain protein 1	WALL-ASSOCIATED HOMEOOMAIN PROTEIN 1		12	a protein similar to AtBLH6 (BEL1-LIKE HOMEODOMAIN6).	 Other	Os12g0636200 	LOC_Os12g43950.4, LOC_Os12g43950.3, LOC_Os12g43950.2, LOC_Os12g43950.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding		
20448	_		_				1	Similar to immediate-early protein RSP40.	 Tolerance and resistance - Stress tolerance	Os01g0332900	LOC_Os01g22990.1, LOC_Os01g22990.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20449	_		_				1	Similar to serine/threonine-protein kinase AFC1 like.	 Tolerance and resistance - Stress tolerance	Os01g0837900	LOC_Os01g62080.1, LOC_Os01g62080.2				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0045727 - positive regulation of translation, GO:0009414 - response to water deprivation, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance	
20450	_		_				1		 Tolerance and resistance - Stress tolerance	Os01g0944100	LOC_Os01g71624.1, LOC_Os01g71624.2, LOC_Os01g71624.3, LOC_Os01g71624.4, LOC_Os01g71624.5				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20451	_		_				3	Similar to lectin-like receptor kinase 7;2 (receptor lectin like kinase).	 Tolerance and resistance - Stress tolerance	Os03g0257900	LOC_Os03g15240.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20452	_		_				3		 Tolerance and resistance - Stress tolerance	Os03g0857500	LOC_Os03g64030.1, LOC_Os03g64030.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20453	GRG	OsGRG	_	Tyrosyl-DNA phosphodiesterase family protein			4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0403400	LOC_Os04g33050.1				GO:0010332 - response to gamma radiation, GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0009414 - response to water deprivation, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0003676 - nucleic acid binding, GO:0008081 - phosphoric diester hydrolase activity, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0000161 - radiation response trait	
20454	_		_	Peptidase A1 domain containing protein			5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0590000	LOC_Os05g51220.1				GO:0003677 - DNA binding, GO:0004190 - aspartic-type endopeptidase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20455	FTSH6	OsFtsH6, FtsH6	_				6	Similar to FtsH protease (VAR2) (zinc dependent protease).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0229000	LOC_Os06g12370.1				GO:0010027 - thylakoid membrane organization, GO:0006508 - proteolysis, GO:0009414 - response to water deprivation, GO:0009535 - chloroplast thylakoid membrane, GO:0005524 - ATP binding, GO:0010206 - photosystem II repair, GO:0010205 - photoinhibition, GO:0008237 - metallopeptidase activity, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0004176 - ATP-dependent peptidase activity, GO:0009941 - chloroplast envelope, GO:0004222 - metalloendopeptidase activity	TO:0000276 - drought tolerance	
20456	_		_				6		 Tolerance and resistance - Stress tolerance	Os06g0343000	LOC_Os06g23504.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20457	_		_				6		 Tolerance and resistance - Stress tolerance	Os06g0477600					GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20458	NDA2	OsNDA2	NADH DEHYDROGENASE A2	Pyridine nucleotide-disulphide oxidoreductase (NADH dehydrogenase-like), NADH dehydrogenase A2	NADH DEHYDROGENASE A2		7	an external NADH dehydrogenase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0564500	LOC_Os07g37730.1				GO:0016491 - oxidoreductase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20459	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0110600	LOC_Os08g01910.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20460	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0192200	LOC_Os08g09300.1, LOC_Os08g09300.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20461	MRLK46	SHR5, OsMRLK46	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 46		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 46		8	Protein kinase (Leucine-rich repeat receptor like kinase).	 Tolerance and resistance - Stress tolerance	Os08g0203400	LOC_Os08g10310.3, LOC_Os08g10310.1, LOC_Os08g10310.2				GO:0016021 - integral to membrane, GO:0009723 - response to ethylene stimulus, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0004672 - protein kinase activity	TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity	
20462	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0425800	LOC_Os08g32980.1, LOC_Os08g32980.2				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
20463	_		_				11		 Tolerance and resistance - Stress tolerance	Os11g0428500	LOC_Os11g24120.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20464	_		_				12		 Tolerance and resistance - Stress tolerance	Os12g0111700	LOC_Os12g02050.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20465	_		_	Sulfotransferase family protein			12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0270900	LOC_Os12g17160.1				GO:0009414 - response to water deprivation, GO:0008146 - sulfotransferase activity	TO:0000276 - drought tolerance	
20466	_		_	Protein kinase, catalytic domain containing protein			1		 Tolerance and resistance - Stress tolerance	Os01g0117600	LOC_Os01g02830.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
20467	_		_				1	Similar to wound-induced protease inhibitor (WIP1).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0131900	LOC_Os01g04040.1				GO:0005576 - extracellular region, GO:0008233 - peptidase activity, GO:0009414 - response to water deprivation, GO:0004867 - serine-type endopeptidase inhibitor activity	TO:0000276 - drought tolerance	
20468	_		_				3		 Tolerance and resistance - Stress tolerance	Os03g0826800	LOC_Os03g61150.1, LOC_Os03g61150.2, LOC_Os03g61150.3				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20469	_	GPAT	_	glycerol-3-phosphate acyltransferase			3	LOC_Os03g61720. Similar to glycerol-3-phosphate acyltransferase 1. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0832800	LOC_Os03g61720.1				GO:0016791 - phosphatase activity, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0016746 - transferase activity, transferring acyl groups, GO:0016020 - membrane, GO:0016311 - dephosphorylation, GO:0010143 - cutin biosynthetic process	TO:0000276 - drought tolerance	
20470	_		_				4		 Tolerance and resistance - Stress tolerance	Os04g0673700	LOC_Os04g57739.1, LOC_Os04g57739.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20471	_		_	Serine/threonine protein kinase domain containing protein			5		 Tolerance and resistance - Stress tolerance	Os05g0545300	LOC_Os05g46750.1				GO:0005737 - cytoplasm, GO:0051403 - stress-activated MAPK cascade, GO:0007346 - regulation of mitotic cell cycle, GO:0042981 - regulation of apoptosis, GO:0009414 - response to water deprivation, GO:0000186 - activation of MAPKK activity, GO:0004709 - MAP kinase kinase kinase activity, GO:0005524 - ATP binding, GO:0032147 - activation of protein kinase activity	TO:0000276 - drought tolerance	
20472	_		_				6		 Tolerance and resistance - Stress tolerance	Os06g0133100					GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20473	_		_				7		 Tolerance and resistance - Stress tolerance	Os07g0190600					GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20474	_		_				7		 Tolerance and resistance - Stress tolerance	Os07g0296000	LOC_Os07g19540.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20475	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0412800	LOC_Os08g31860.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20476	_		_	NAD(P)-binding domain containing protein			8		 Tolerance and resistance - Stress tolerance	Os08g0553800	LOC_Os08g44000.1				GO:0009534 - chloroplast thylakoid, GO:0010114 - response to red light, GO:0010218 - response to far red light, GO:0009637 - response to blue light, GO:0010207 - photosystem II assembly, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0016117 - carotenoid biosynthetic process, GO:0003743 - translation initiation factor activity, GO:0009414 - response to water deprivation, GO:0006364 - rRNA processing	TO:0000276 - drought tolerance	
20477	_		_				9	Similar to plant viral-response family protein.	 Tolerance and resistance - Stress tolerance	Os09g0444900	LOC_Os09g27260.1				GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20478	_		_				12	Similar to H0321H01.8 protein.	 Tolerance and resistance - Stress tolerance	Os12g0142900	LOC_Os12g04880.1, LOC_Os12g04880.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20479	_		_				12	Non-protein coding transcript.	 Tolerance and resistance - Stress tolerance	Os12g0266000	LOC_Os12g16524.1, LOC_Os12g16524.2, LOC_Os12g16524.3				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20480	ASMT2	ZRP4, OsASMT2, OsASMT15	ACETYL-SEROTONIN METHYLTRANSFERASE 2	O-methyltransferase ZRP4, N-acetylserotonin methyltransferase 2	ACETYL-SEROTONIN METHYLTRANSFERASE 2		10	Q8VWJ6. OsASMT15 in Bhowal et al. 2021.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0118200 	LOC_Os10g02880.1				GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0046688 - response to copper ion, GO:0008171 - O-methyltransferase activity, GO:0009739 - response to gibberellin stimulus, GO:0032259 - methylation, GO:0030187 - melatonin biosynthetic process, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0006952 - defense response, GO:0009725 - response to hormone stimulus, GO:0010446 - response to alkalinity, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0017096 - acetylserotonin O-methyltransferase activity, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009416 - response to light stimulus, GO:0007623 - circadian rhythm, GO:0009607 - response to biotic stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000481 - alkali sensitivity, TO:0000075 - light sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000112 - disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000021 - copper sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	PO:0009006 - shoot system 
20481	ASMT1	ZRP4, OMT, ASMT, OsASMT, OsASMT1, ASMT1, OsASMT13, OsCOMT19, COMT19	ACETYL-SEROTONIN METHYLTRANSFERASE 1	O-methyltransferase ZRP4, O-methyltransferase, N-acetylserotonin methyltransferase, Caffeic Acid O-Methyltransferase 19	ACETYL-SEROTONIN METHYLTRANSFERASE 1		9	Q6EPG8. OsASMT13 in Bhowal et al. 2021. 2, 4, 7-trihydroxy-1, 4-benzoxazine-3-one- glucoside 7-O-methyltransferase.  a benzoxazinoid biosynthetic gene.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0344500 	LOC_Os09g17560.1				GO:0046688 - response to copper ion, GO:0009607 - response to biotic stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0002238 - response to molecule of fungal origin, GO:0052315 - phytoalexin biosynthetic process, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0007623 - circadian rhythm, GO:0009411 - response to UV, GO:0009723 - response to ethylene stimulus, GO:0008171 - O-methyltransferase activity, GO:0006952 - defense response, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0010446 - response to alkalinity, GO:0030187 - melatonin biosynthetic process, GO:0032259 - methylation, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009741 - response to brassinosteroid stimulus, GO:0009646 - response to absence of light, GO:0009409 - response to cold, GO:0009725 - response to hormone stimulus, GO:0017096 - acetylserotonin O-methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0009737 - response to abscisic acid stimulus	TO:0000167 - cytokinin sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000160 - UV light sensitivity, TO:0000112 - disease resistance, TO:0000481 - alkali sensitivity, TO:0000021 - copper sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009047 - stem , PO:0025034 - leaf 
20483	HSA1B	hsa1(t), s(t), hst49, OsHSA1B	F2 STERILITY-1	F2 sterility-1(t)		hsa1-IR	12	This gene causes F2 sterility complementarily with hsa2(t) in the cross between japonica and indica cross. hsa1 locus contains two interacting genes, HSA1a and HSA1b, within a 30-kb region (Kubo et al. 2016). LC026149(cDNA accession, IR24, indica) and LC026150(cDNA accession, Asomidori, japonica).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os12g0589700	LOC_Os12g39920	GR:0061092			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000046 - f2-generation sterility	PO:0009046 - flower 
20484	BOR3	OsBOR3	EFFLUX BORON TRANSPORTER 3	Boron transporter 3	EFFLUX BORON TRANSPORTER 3		1		 Biochemical character	Os01g0175600	LOC_Os01g08020.1	GR:0101273			GO:0048229 - gametophyte development, GO:0016021 - integral to membrane, GO:0005452 - inorganic anion exchanger activity, GO:0009554 - megasporogenesis		PO:0020003 - plant ovule , PO:0028003 - gametophyte development stage 
20485	CGA1	Cga1, OsCga1, OsCGA1, OsGATA11, GATA11	CYTOKININ GATA TRANSCRIPTION FACTOR 1	Cytokinin GATA Transcription Factor1, Cytokinin GATA Transcription Factor 1, GATA Transcription Factor 11, GATA factor 11, CYTOKININ-INDUCED GATA1	CYTOKININ GATA TRANSCRIPTION FACTOR 1		2	GO:0001085 RNA polymerase II transcription factor binding. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. RNAseq data is accessible through NCBI accessions PRJNA736666 and PRJNA739378.	 Tolerance and resistance - Stress tolerance,  Other,  Character as QTL - Yield and productivity,  Coloration - Chlorophyll	Os02g0220400	LOC_Os02g12790.1				GO:0046685 - response to arsenic, GO:0010260 - organ senescence, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0003682 - chromatin binding, GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0009646 - response to absence of light, GO:0009658 - chloroplast organization, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus, GO:0019252 - starch biosynthetic process	TO:0000128 - harvest index, TO:0002715 - chloroplast development trait, TO:0000276 - drought tolerance, TO:0000201 - panicle color, TO:0000031 - silicon sensitivity, TO:0002661 - seed maturation, TO:0000495 - chlorophyll content, TO:0000075 - light sensitivity, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000011 - nitrogen sensitivity	PO:0007632 - seed maturation stage 
20486	GATA1 	OsGATA1, OsGATA6, GATA6	GATA TRANSCRIPTION FACTOR 1	GATA transcription factor 1, GATA factor 1	GATA TRANSCRIPTION FACTOR 1		5	LOC_Os05g44400.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. OsGATA6 in Gupta et al. 2017.	 Other	Os05g0520300	LOC_Os05g44400.1				GO:0006366 - transcription from RNA polymerase II promoter, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter		
20487	GATA2	OsGATA2, OsGATA2a, OsGATA2b	GATA TRANSCRIPTION FACTOR 2	GATA transcription factor 2, GATA factor 2	GATA TRANSCRIPTION FACTOR 2		2	LOC_Os02g43150.1 (OsGATA2a), LOC_Os02g43150.2 (OsGATA2a). GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os02g0645600 	LOC_Os02g43150.1, LOC_Os02g43150.2				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0003682 - chromatin binding		
20488	GATA3	OsGATA3	GATA TRANSCRIPTION FACTOR 3	GATA transcription factor 3, GATA factor 3	GATA TRANSCRIPTION FACTOR 3		2	OSJNBa0049O12.10. 	 Other						GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0008270 - zinc ion binding		
20489	GATA4	OsGATA4	GATA TRANSCRIPTION FACTOR 4	GATA transcription factor 4, GATA factor 4	GATA TRANSCRIPTION FACTOR 4		3	LOC_Os03g05160.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os03g0145200	LOC_Os03g05160.1				GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0003682 - chromatin binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
20490	GATA5	OsGATA5	GATA TRANSCRIPTION FACTOR 5	GATA transcription factor 5, GATA factor 5	GATA TRANSCRIPTION FACTOR 5		4	LOC_Os04g45650.2 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os04g0539500	LOC_Os04g45650.2				GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation		
20491	GATA6	OsGATA6, OsGATA1, GATA1	GATA TRANSCRIPTION FACTOR 6	GATA transcription factor 6, GATA factor 6	GATA TRANSCRIPTION FACTOR 6		1	LOC_Os01g54210.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. OsGATA1 in Gupta et al. 2017.	 Other	Os01g0745700	LOC_Os01g54210.1				GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0008270 - zinc ion binding		
20492	GATA7	OsGATA7	GATA TRANSCRIPTION FACTOR 7	GATA transcription factor 7, GATA factor 7	GATA TRANSCRIPTION FACTOR 7		10	GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Vegetative organ - Culm,  Other,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Vegetative organ - Root	Os10g0557600 	LOC_Os10g40810.1				GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter	TO:0002759 - grain number, TO:0002730 - grain shape, TO:0002677 - brassinosteroid sensitivity, TO:0000590 - grain weight, TO:0000547 - primary branch number, TO:0000206 - leaf angle, TO:0000207 - plant height, TO:0000227 - root length	PO:0009037 - lemma , PO:0009029 - stamen , PO:0025034 - leaf , PO:0009005 - root , PO:0020142 - stem internode 
20493	GATA8	OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b, DLN10, OsDLN10	GATA TRANSCRIPTION FACTOR 8	GATA transcription factor 8, GATA factor 8, DLN repressor 10, DLN motif protein 10	GATA TRANSCRIPTION FACTOR 8	OsGATA8-cr1	1	LOC_Os01g24070.1 (OsGATA8a), LOC_Os01g24070.2 (OsGATA8b). DAP-seq data: SRR28790977, SRR28790978; RNA-seq data: SRR28799732, SRR28799733, SRR28799734. OsGATA14 in Behringer and Schwechheimer 2015. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. TO:0020096: mineral and ion transport trait. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content.	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Other,  Tolerance and resistance - Stress tolerance	Os01g0343300	LOC_Os01g24070.2, LOC_Os01g24070.1				GO:0006366 - transcription from RNA polymerase II promoter, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0003682 - chromatin binding, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0045847 - negative regulation of nitrogen utilization, GO:0031667 - response to nutrient levels, GO:0010167 - response to nitrate, GO:0060359 - response to ammonium ion, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding	TO:0000276 - drought tolerance, TO:0000143 - relative biomass, TO:0000153 - relative yield, TO:0000453 - panicle to tiller ratio, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0000615 - abscisic acid sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000346 - tiller number	PO:0000055 - bud , PO:0020148 - shoot apical meristem , PO:0009005 - root 
20494	GATA9	OsGATA9	GATA TRANSCRIPTION FACTOR 9	GATA transcription factor 9, GATA factor 9	GATA TRANSCRIPTION FACTOR 9		1	LOC_Os01g47360.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os01g0662800	LOC_Os01g47360.1				GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter		
20495	GATA10	OsGATA10	GATA TRANSCRIPTION FACTOR 10	GATA transcription factor 10, GATA factor 10	GATA TRANSCRIPTION FACTOR 10	Osgata10	1	GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0976800	LOC_Os01g74540.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0048653 - anther development, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex	TO:0000437 - male sterility	PO:0001004 - anther development stage 
20496	GATA12	OsGATA12	GATA TRANSCRIPTION FACTOR 12	GATA transcription factor 12, GATA factor 12	GATA TRANSCRIPTION FACTOR 12		3	LOC_Os03g61570. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. TO:0000905: seed yield.	 Vegetative organ - Leaf,  Reproductive organ - Heading date,  Other,  Character as QTL - Yield and productivity,  Vegetative organ - Root,  Coloration - Chlorophyll,  Vegetative organ - Culm	Os03g0831200	LOC_Os03g61570.1, LOC_Os03g61570.2				GO:0008270 - zinc ion binding, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence, GO:0015995 - chlorophyll biosynthetic process, GO:0015996 - chlorophyll catabolic process, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0048364 - root development, GO:0048573 - photoperiodism, flowering, GO:0051301 - cell division, GO:0003682 - chromatin binding, GO:0005634 - nucleus	TO:0000241 - leaf number, TO:0000084 - root number, TO:0000340 - total soluble sugar content, TO:0000207 - plant height, TO:0000445 - seed number, TO:0000449 - grain yield per plant, TO:0002673 - amino acid content, TO:0000656 - root development trait, TO:0000702 - starch concentration, TO:0000227 - root length, TO:0002616 - flowering time, TO:0000344 - days to flower, TO:0000457 - total biomass yield, TO:0000495 - chlorophyll content, TO:0000128 - harvest index, TO:0000346 - tiller number, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000371 - yield trait, TO:0000249 - leaf senescence	PO:0001031 - 4 root elongation stage , PO:0001054 - 4 leaf senescence stage 
20497	GATA13	OsGATA13	GATA TRANSCRIPTION FACTOR 13	GATA transcription factor 13, GATA factor 13	GATA TRANSCRIPTION FACTOR 13		5	LOC_Os05g06340.1 AA752076. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os05g0155400	LOC_Os05g06340.1				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter		
20498	GATA14	OsGATA14	GATA TRANSCRIPTION FACTOR 14	GATA transcription factor 14, GATA factor 14	GATA TRANSCRIPTION FACTOR 14		5		 Other								
20499	GATA16	OsGATA16, OsGNC, GNC	GATA TRANSCRIPTION FACTOR 16	"GATA transcription factor 16, GATA factor 16, \"GATA, NITRATE-INDUCIBLE, CARBON-METABOLISM INVOLVED\""	GATA TRANSCRIPTION FACTOR 16		6	GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Tolerance and resistance - Stress tolerance,  Other	Os06g0571800	LOC_Os06g37450.1				GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0003682 - chromatin binding	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
20500	GATA21	OsGATA21	GATA TRANSCRIPTION FACTOR 21	GATA transcription factor 21, GATA factor 21	GATA TRANSCRIPTION FACTOR 21		11		 Other	Os11g0572901					GO:0008270 - zinc ion binding, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
20501	GATA22	OsGATA22	GATA TRANSCRIPTION FACTOR 22	GATA transcription factor 22, GATA factor 22	GATA TRANSCRIPTION FACTOR 22		3	LOC_Os03g08370.1	 Other,  Tolerance and resistance - Stress tolerance	Os03g0181600	LOC_Os03g08370.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
20502	GATA23	OsGATA23, OsGATA23a, OsGATA23b	GATA TRANSCRIPTION FACTOR 23	GATA transcription factor 23, GATA factor 23	GATA TRANSCRIPTION FACTOR 23		7		 Other,  Tolerance and resistance - Stress tolerance	Os07g0615900	LOC_Os07g42400.2, LOC_Os07g42400.1				GO:0043565 - sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0008270 - zinc ion binding, GO:0003700 - transcription factor activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
20503	GATA24	OsGATA24	GATA TRANSCRIPTION FACTOR 24	GATA transcription factor 24, GATA factor 24	GATA TRANSCRIPTION FACTOR 24		10	LOC_Os10g32070. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os10g0458800 	LOC_Os10g32070.1				GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding		
20504	GATA25	OsGATA25	GATA TRANSCRIPTION FACTOR 25	GATA transcription factor 25, GATA factor 25	GATA TRANSCRIPTION FACTOR 25		12	LOC_Os12g42970. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other	Os12g0624900  	LOC_Os12g42970.1				GO:0005667 - transcription factor complex, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter		
20505	GATA26	OsGATA26	GATA TRANSCRIPTION FACTOR 26	GATA transcription factor 26, GATA factor 26	GATA TRANSCRIPTION FACTOR 26		12	LOC_Os12g07120.1 GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Other,  Tolerance and resistance - Stress tolerance	Os12g0168800 	LOC_Os12g07120.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0030154 - cell differentiation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
20506	GATA28	OsGATA28	GATA TRANSCRIPTION FACTOR 28	GATA transcription factor 28, GATA factor 28	GATA TRANSCRIPTION FACTOR 28		11	LOC_Os11g08410. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. 	 Reproductive organ - Heading date,  Reproductive organ - panicle,  Other,  Vegetative organ - Culm	Os11g0187200 	LOC_Os11g08410.1				GO:0003682 - chromatin binding, GO:0008270 - zinc ion binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005667 - transcription factor complex, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:2000028 - regulation of photoperiodism, flowering, GO:0005634 - nucleus	TO:0002616 - flowering time, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000137 - days to heading	
20507	GATA27	OsGATA27	GATA TRANSCRIPTION FACTOR 27	GATA transcription factor 27, GATA factor 27	GATA TRANSCRIPTION FACTOR 27		3	LOC_Os03g03850.1 GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085: RNA polymerase II transcription factor binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding. 	 Other		LOC_Os03g03850				GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0030154 - cell differentiation, GO:0005667 - transcription factor complex		
20508	_	OsGATA8, GATA8, OsGATA14, GATA14	_	GATA transcription factor 8, GATA factor 8			5	LOC_Os05g49280.1 OsGATA14 in Gupta et al. 2017.	 Other	Os05g0567900	LOC_Os05g49280.1						
20509	NIGT1	OsNIGT1, HINGE6, OsHINGE6	NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1	"\"Nitrate-Inducible, GARP-type Transcriptional Repressor 1\", Highly Induced by Nitrate Gene 6, NITRATE-INDUCIBLE GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1"	NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1	nigt1, nigt1-1, nigt1-2	2	TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound. TO:0020100: nitrate uptake.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Other	Os02g0325600	LOC_Os02g22020.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0051302 - regulation of cell division, GO:0019740 - nitrogen utilization, GO:0055062 - phosphate ion homeostasis, GO:0009399 - nitrogen fixation, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0016036 - cellular response to phosphate starvation, GO:0040008 - regulation of growth, GO:0010167 - response to nitrate, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000357 - growth and development trait, TO:0000511 - phosphorus uptake, TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance, TO:0000011 - nitrogen sensitivity, TO:0000495 - chlorophyll content, TO:0000654 - shoot development trait	
20510	_	SGL1	_	SG1-LIKE PROTEIN1, SG1-LIKE PROTEIN 1			2	GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Culm	Os02g0762600	LOC_Os02g52490.1, LOC_Os02g52490.2				GO:0010229 - inflorescence development, GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0048316 - seed development	TO:0000145 - internode length, TO:0002677 - brassinosteroid sensitivity, TO:0000040 - panicle length, TO:0000146 - seed length, TO:0000207 - plant height, TO:0000206 - leaf angle, TO:0000625 - spikelet density, TO:0000089 - panicle type, TO:0000621 - inflorescence development trait, TO:0000653 - seed development trait, TO:0000734 - grain length	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage , PO:0007089 - stem elongation stage 
20511	_		_	SG1-related protein			8	The spatial and temporal profiles of Os08g0474100 expression retrieved from the Rice Expression Profile Database (Sato et al., 2011) were similar to those of SG1 and SGL1, although the signal intensity was weak (Nakagawa et al. 2011).		Os08g0474100							
20512	CYP93G1	OsCYP93G1, OsFNSII, FNSII, OsCYP71S4, CYP71S4	P-450 93G1	Cytochrome P450 93G1, Flavone Synthase II	CYTOCHROME P450 93G1	fnsII	4	BGIOSGA015743. OsCYP71S4 in Sahoo et al. 2023. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os04g0101400 	LOC_Os04g01140.2, LOC_Os04g01140.1				GO:0016020 - membrane, GO:0051553 - flavone biosynthetic process, GO:0020037 - heme binding, GO:0009827 - plant-type cell wall modification, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0009809 - lignin biosynthetic process, GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content, TO:0000597 - quality trait	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009038 - palea , PO:0000290 - tracheary element , PO:0009037 - lemma 
20513	CYP93F1	OsCYP93F1, OsCYP71AB11, CYP71AB11	P-450 93F1	Cytochrome P450 93F1	CYTOCHROME P450 93F1		6	BGIOSGA020890. OsCYP71AB11 in Sahoo et al. 2023. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os06g0613600 	LOC_Os06g41070.1				GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding		
20514	ENL1L	OsENL1L, CHR712, OsCHR712	ENL1-LIKE	chromatin remodeling factor 712	ENL1-LIKE		4	an ENL1 paralog. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0692700 	LOC_Os04g59620.1				GO:0015616 - DNA translocase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
20515	_	OsRePRP1.2, RePRP1.2	_	REPETITIVE PROLINE-RICH PROTEIN 1.2			5	GO:2001085: arabinogalactan binding.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os05g0227600	LOC_Os05g13940.1				GO:0030247 - polysaccharide binding, GO:0051511 - negative regulation of unidimensional cell growth, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0048364 - root development	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000306 - root thickness, TO:0000227 - root length, TO:0000276 - drought tolerance, TO:0000656 - root development trait	PO:0020104 - leaf sheath , PO:0007520 - root development stage , PO:0001031 - 4 root elongation stage , PO:0009049 - inflorescence , PO:0009047 - stem 
20516	_	OsRePRP2.1, RePRP2.1	_	REPETITIVE PROLINE-RICH PROTEIN 2.1			7	GO:2001085: arabinogalactan binding.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os07g0418700 	LOC_Os07g23660.1				GO:0048364 - root development, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0030247 - polysaccharide binding, GO:0051511 - negative regulation of unidimensional cell growth	TO:0000656 - root development trait, TO:0000227 - root length, TO:0000306 - root thickness, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0001031 - 4 root elongation stage , PO:0009049 - inflorescence , PO:0009005 - root , PO:0007520 - root development stage 
20517	_	OsRePRP2.2, RePRP2.2	_	REPETITIVE PROLINE-RICH PROTEIN 2.2			7	GO:2001085: arabinogalactan binding.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0418600	LOC_Os07g23640.1				GO:0030247 - polysaccharide binding, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0051511 - negative regulation of unidimensional cell growth, GO:0005886 - plasma membrane	TO:0000227 - root length, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000306 - root thickness	PO:0001031 - 4 root elongation stage , PO:0009049 - inflorescence , PO:0009005 - root , PO:0007520 - root development stage 
20518	SRL1	OsSRL1, CLD1/SRL1, CLD1, OsCLD1, OsSPARK9, SPARK9	SEMI-ROLLED LEAF 1	SEMI-ROLLED LEAF1, curled leaf and dwarf 1, SIMILAR PROTEIN TO ARK 9	SIMILAR PROTEIN TO ARK 9	srl1-1, srl1-2, cld1	7	a Putative Glycosylphosphatidylinositol-Anchored Protein. TO:0000872: leaf erect. TO:0000993: cellulose content. TO:0000847: panicle inflorescence morphology trait. TO:0020097: stomatal opening. GO:1990069: stomatal opening. TO:0000748: leaf morphology trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0102300 	LOC_Os07g01240.1, LOC_Os07g01240.2				GO:0009414 - response to water deprivation, GO:0030104 - water homeostasis, GO:0009832 - plant-type cell wall biogenesis, GO:0005634 - nucleus, GO:0048366 - leaf development, GO:0009751 - response to salicylic acid stimulus, GO:0009635 - response to herbicide, GO:0009733 - response to auxin stimulus, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009506 - plasmodesma, GO:0046658 - anchored to plasma membrane, GO:0005886 - plasma membrane, GO:0042335 - cuticle development	TO:0000040 - panicle length, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle, TO:0000316 - photosynthetic ability, TO:0000396 - grain yield, TO:0000085 - leaf rolling, TO:0000731 - lignin content, TO:0000131 - leaf water potential, TO:0000136 - relative water content, TO:0000276 - drought tolerance, TO:0002681 - leaf curling, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000180 - spikelet fertility, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000655 - leaf development trait, TO:0000058 - herbicide sensitivity	PO:0001050 - leaf development stage , PO:0004001 - bulliform cell 
20519	VHA-A2	OsVHA-A2, VHAA2	VACUOLAR H-ATPASE A2 SUBUNIT	vacuolar H+-ATPase subunit A, Vacuolar proton-ATPase subunit A, vacuolar-type H+-ATPase subunit A2	VACUOLAR H-ATPASE A2 SUBUNIT		2		 Biochemical character	Os02g0175400 	LOC_Os02g07870.1				GO:0005524 - ATP binding, GO:0033180 - proton-transporting V-type ATPase, V1 domain, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0046034 - ATP metabolic process, GO:0015991 - ATP hydrolysis coupled proton transport		
20520	_		_	vacuolar H+-ATPase subunit C, Vacuolar ATP synthase 21-kD proteolipid subunit C	_		1	LOC_Os01g42430.	 Biochemical character	Os01g0610100	LOC_Os01g42430.1				GO:0007035 - vacuolar acidification, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0016021 - integral to membrane, GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain, GO:0015991 - ATP hydrolysis coupled proton transport		
20521	VHA-D	OsVHA-D	VACUOLAR H-ATPASE D SUBUNIT	vacuolar H+-ATPase subunit D, Vacuolar ATP synthase subunit D	VACUOLAR H-ATPASE D SUBUNIT		4		 Biochemical character	Os04g0643100	LOC_Os04g55040.1, LOC_Os04g55040.2				GO:0006007 - glucose catabolic process, GO:0005794 - Golgi apparatus, GO:0009651 - response to salt stress, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances, GO:0000325 - plant-type vacuole, GO:0007033 - vacuole organization, GO:0007030 - Golgi organization, GO:0006816 - calcium ion transport, GO:0006623 - protein targeting to vacuole, GO:0005886 - plasma membrane		
20522	_	SKD1	_	SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4b			1	LOC_Os01g55260.	 Biochemical character	Os01g0757400	LOC_Os01g55260.1, LOC_Os01g55260.2				GO:0008568 - microtubule-severing ATPase activity, GO:0005524 - ATP binding		
20523	_		_	Vacuolar protein sorting36 family protein, Vacuolar protein sorting 36 family protein			1	LOC_Os01g59800.	 Biochemical character	Os01g0813500 	LOC_Os01g59800.1, LOC_Os01g59800.2, LOC_Os01g59800.3				GO:0031902 - late endosome membrane, GO:0032266 - phosphatidylinositol 3-phosphate binding, GO:0043130 - ubiquitin binding, GO:0043328 - protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway, GO:0000814 - ESCRT II complex		
20524	_		_	Vacuolar protein-sorting protein45 homolog, Vacuolar protein-sorting protein 45 homolog, AtVPS45 homolog			2	LOC_Os02g24134.	 Biochemical character	Os02g0437800	LOC_Os02g24134.1, LOC_Os02g24134.2, LOC_Os02g24134.3, LOC_Os02g24134.4				GO:0006612 - protein targeting to membrane, GO:0006623 - protein targeting to vacuole, GO:0043269 - regulation of ion transport, GO:0010363 - regulation of plant-type hypersensitive response, GO:0009624 - response to nematode, GO:0006904 - vesicle docking during exocytosis, GO:0009705 - plant-type vacuole membrane, GO:0005802 - trans-Golgi network, GO:0006882 - cellular zinc ion homeostasis, GO:0015802 - basic amino acid transport, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0043069 - negative regulation of programmed cell death, GO:0006862 - nucleotide transport, GO:0015696 - ammonium transport, GO:0043090 - amino acid import, GO:0006816 - calcium ion transport		
20525	_		_	Vacuolar protein sorting-associated protein35 family protein, Vacuolar protein sorting-associated protein 35 family protein			3	LOC_Os03g58700.	 Biochemical character	Os03g0801600	LOC_Os03g58700.1				GO:0008565 - protein transporter activity, GO:0006886 - intracellular protein transport, GO:0042147 - retrograde transport, endosome to Golgi, GO:0005770 - late endosome, GO:0030904 - retromer complex		
20526	VSR7	OsVSR7	VACUOLAR SORTING RECEPTOR 7	Vacuolar sorting receptor homolog, vacuolar sorting receptor 7	VACUOLAR SORTING RECEPTOR 7		4	LOC_Os04g52190.	 Biochemical character	Os04g0611400	LOC_Os04g52190.1				GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane		
20527	VHA-C	OsVHA-C	VACUOLAR H-ATPASE C SUBUNIT	Vacuolar ATP synthase subunit C	VACUOLAR H-ATPASE C SUBUNIT		5		 Biochemical character	Os05g0593100 	LOC_Os05g51530.1, LOC_Os05g51530.2				GO:0048765 - root hair cell differentiation, GO:0048193 - Golgi vesicle transport, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0043255 - regulation of carbohydrate biosynthetic process, GO:0051788 - response to misfolded protein, GO:0080129 - proteasome core complex assembly, GO:0005794 - Golgi apparatus, GO:0030243 - cellulose metabolic process, GO:0006007 - glucose catabolic process, GO:0005886 - plasma membrane, GO:0016051 - carbohydrate biosynthetic process, GO:0015991 - ATP hydrolysis coupled proton transport, GO:0009932 - cell tip growth, GO:0009853 - photorespiration, GO:0009809 - lignin biosynthetic process, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0007033 - vacuole organization, GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain, GO:0000325 - plant-type vacuole, GO:0007030 - Golgi organization, GO:0006816 - calcium ion transport, GO:0006511 - ubiquitin-dependent protein catabolic process		
20528	GD1	OsGD1, OsVAL1, VAL1, DLN186, OsDLN186	GERMINATION DEFECTIVE 1	germination-defective1, DLN repressor 186, DLN motif protein 186		gd1	7	a B3 domain transcriptional repressor. a homolog of Arabidopsis VAL genes. Q0D5G4. GO:1900140: regulation of seedling development.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Other,  Tolerance and resistance - Stress tolerance	Os07g0563300	LOC_Os07g37610.1				GO:0010029 - regulation of seed germination, GO:0009908 - flower development, GO:0009743 - response to carbohydrate stimulus, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009685 - gibberellin metabolic process, GO:0048366 - leaf development, GO:0033500 - carbohydrate homeostasis, GO:0016564 - transcription repressor activity	TO:0002675 - gibberellic acid content, TO:0000333 - sugar content, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000696 - starch content, TO:0000622 - flower development trait	PO:0007057 - 0 seed germination stage , PO:0007131 - seedling development stage , PO:0007615 - flower development stage 
20529	_	OsVAL2, VAL2, DLN195, OsDLN195	_	VP1/ABI3-LIKE 2, DLN repressor 195, DLN motif protein 195		osval2, osval2-T1-1, osval2-T1-2, osval2-T2-1, osval2-T2-2	7	a homolog of Arabidopsis VAL genes. Q6Z3U3.	 Other	Os07g0679700 	LOC_Os07g48200.2, LOC_Os07g48200.1				GO:0003677 - DNA binding, GO:0008270 - zinc ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
20530	_		_	HTH1-related protein			8	a close homolog of ONI3.	 Biochemical character	Os08g0401500	LOC_Os08g31030.1				GO:0050660 - FAD binding, GO:0016829 - lyase activity, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors		
20531	_	alpha-Gal II	_	alpha-galactosidase II			7	LOC_Os07g26900.	 Biochemical character	Os07g0452100	LOC_Os07g26900.1	GR:0101256					
20532	_	alpha-Gal III	_	alpha-galactosidase III			7	LOC_Os07g48160. GO:0052692: raffinose alpha-galactosidase activity.	 Biochemical character	Os07g0679300	LOC_Os07g48160.1	GR:0101257			GO:0009755 - hormone-mediated signaling, GO:0006869 - lipid transport, GO:0006891 - intra-Golgi vesicle-mediated transport, GO:0006635 - fatty acid beta-oxidation, GO:0005773 - vacuole, GO:0005975 - carbohydrate metabolic process, GO:0048767 - root hair elongation, GO:0009505 - plant-type cell wall, GO:0016558 - protein import into peroxisome matrix, GO:0010351 - lithium ion transport		
20533	PLS4	OsPLS4	PREMATURE LEAF SENESCENCE 4	3-Oxoacyl-[acyl-carrier-protein] reductase, Premature Leaf Senescence 4		pls4	4	PO:0030123: panicle inflorescence.	 Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os04g0376300	LOC_Os04g30760.1	GR:0101294			GO:0009409 - response to cold, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization, GO:0006633 - fatty acid biosynthetic process, GO:0009507 - chloroplast, GO:0016491 - oxidoreductase activity, GO:0010025 - wax biosynthetic process	TO:0000326 - leaf color, TO:0001027 - net photosynthetic rate, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0002715 - chloroplast development trait, TO:0000455 - seed set percent, TO:0000592 - 1000-dehulled grain weight, TO:0000346 - tiller number, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath 
20534	CYP75B4	OsCYP75B4, OsC5'H, C5'H, OsF3'H9, F3'H9, OsCYP71P2, CYP71P2	P-450 75B4	Cytochrome P450 75B4, flavonoid 3'-hydroxylase 9	CYTOCHROME P450 75B4	cyp75b4, cyp75b4-a, cyp75b4-b	10	BGIOSGA032680. OsCYP71P2 in Sahoo et al. 2023. GO:0044550: secondary metabolite biosynthetic process. a flavonoid 39-hydroxylase.	 Biochemical character	Os10g0317900 	LOC_Os10g16974.1				GO:0009813 - flavonoid biosynthetic process, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0020037 - heme binding		PO:0009049 - inflorescence , PO:0009038 - palea , PO:0009037 - lemma , PO:0025034 - leaf 
20535	CYP75A11	OsCYP75A11, OsF3'5'H, F3'5'H, OsF3'5'H1, F3'5'H1	P-450 75A11	"Cytochrome P450 75A11, \"flavonoid 3', 5'-hydroxylase 1\", \"flavonoid 3', 5'-hydroxylase\""	CYTOCHROME P450 75A11		3	flavonoid 3',5'-hydroxylase 1 (Os03g0367101) in Chen et al. 2019.	 Biochemical character,  Coloration - Anthocyanin	Os03g0367101/Os03g0367200 	LOC_Os03g25150.1				GO:0009813 - flavonoid biosynthetic process		PO:0009049 - inflorescence 
20536	SRO	OsSRO	SMALL REPRODUCTIVE ORGANS	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein	SMALL REPRODUCTIVE ORGANS		4	orthologous to Arabidopsis transcription factor SUPERMAN (SUP).	 Reproductive organ - Spikelet, flower, glume, awn,  Other	Os04g0168100	LOC_Os04g08600.1	GR:0101259			GO:0009755 - hormone-mediated signaling, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0048443 - stamen development, GO:0048437 - floral organ development, GO:0048608 - reproductive structure development, GO:0051302 - regulation of cell division, GO:0001558 - regulation of cell growth, GO:0080086 - stamen filament development, GO:0010582 - floral meristem determinacy, GO:0010093 - specification of floral organ identity, GO:0046872 - metal ion binding	TO:0002602 - pistil size, TO:0002601 - stamen size, TO:0002600 - flower organ size	PO:0009046 - flower 
20537	_		_	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein			2		 Other	Os02g0100900	LOC_Os02g01090.1				GO:0046872 - metal ion binding		
20538	_		_	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein			11		 Other	Os11g0707300	LOC_Os11g48000.1				GO:0046872 - metal ion binding		
20539	_		_	EPF zinc-finger, plant-specific EPF subclass Cys2-His2 zinc-finger protein			4	LOC_Os04g50070.	 Other		LOC_Os04g50070				GO:0046872 - metal ion binding		
20540	DXS2	OsDXS2, dxs2	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2	1-Deoxy-D-xylulose 5-phosphate synthase 2, Deoxyxylulose 5-phosphate synthase 2	1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2		6	Transketolase.	 Coloration - Chlorophyll,  Coloration - Others,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0142900	LOC_Os06g05100.5, LOC_Os06g05100.4, LOC_Os06g05100.1, LOC_Os06g05100.2, LOC_Os06g05100.3	GR:0101296			GO:0008299 - isoprenoid biosynthetic process, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity, GO:0009416 - response to light stimulus, GO:0016116 - carotenoid metabolic process, GO:0016114 - terpenoid biosynthetic process	TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content, TO:0000486 - seed color, TO:0002695 - beta-carotene content, TO:0002696 - alpha carotene content, TO:0002699 - lycopene content, TO:0000496 - carotenoid content, TO:0000289 - carotene content	PO:0025034 - leaf 
20541	_	OsDAHPS1, DAHPS1	_	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1			3	Q75LR2. AB122057. LOC_Os03g27230.	 Biochemical character	Os03g0389700	LOC_Os03g27230.1	GR:0101286			GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009423 - chorismate biosynthetic process, GO:0009507 - chloroplast		
20542	NCA1A	OsCOIN, COIN, OsNCA1a, NCA1a, OsRING1, RING1	NO CATALASE ACTIVITY 1A	cold-inducible, cold-inducible zinc finger protein, RING-type E3 ubiquitin ligase 1	_	nca1a	1	nca1a/nca1b double mutant displayed obvious lesion and even albino symptoms on leaves throughout the growth stages (Liu et al. 2019.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0104100 	LOC_Os01g01420.3, LOC_Os01g01420.1, LOC_Os01g01420.2	GR:0101269			GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0008270 - zinc ion binding, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006002 - proline content, TO:0000326 - leaf color, TO:0000303 - cold tolerance	PO:0025034 - leaf 
20543	_	Du1L	_	Du1-like			1	LOC_Os01g15860. GO:2000630: positive regulation of miRNA metabolic process. GO:2000636: positive regulation of primary miRNA processing. GO:0080188: RNA-directed DNA methylation.		Os01g0263600	LOC_Os01g15860.1	GR:0101268			GO:0046540 - U4/U6 x U5 tri-snRNP complex, GO:0071013 - catalytic step 2 spliceosome, GO:0000244 - assembly of spliceosomal tri-snRNP		
20544	SDH2-2	sdh2-2, OsSDH2-2	SUCCINATE DEHYDROGENASE SUBUNIT 2-2	mitochondrial Complex II subunit SDH2-2	SUCCINATE DEHYDROGENASE SUBUNIT 2-2		9	Q6H4G3.	 Seed - Physiological traits - Dormancy,  Biochemical character	Os09g0370300	LOC_Os09g20440.1	GR:0100184			GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009845 - seed germination, GO:0045273 - respiratory chain complex II, GO:0009055 - electron carrier activity, GO:0006099 - tricarboxylic acid cycle, GO:0045281 - succinate dehydrogenase complex, GO:0006121 - mitochondrial electron transport, succinate to ubiquinone, GO:0008177 - succinate dehydrogenase (ubiquinone) activity, GO:0046872 - metal ion binding, GO:0005743 - mitochondrial inner membrane, GO:0051538 - 3 iron, 4 sulfur cluster binding, GO:0051537 - 2 iron, 2 sulfur cluster binding		PO:0007057 - 0 seed germination stage , PO:0009010 - seed 
20545	_	sdh3, SDH3	_	mitochondrial Complex II subunit SDH3, SUCCINATE DEHYDROGENASE SUBUNIT 3			7	LOC_Os07g33680. Q84VK7.	 Biochemical character	Os07g0521000	LOC_Os07g33680.1				GO:0006121 - mitochondrial electron transport, succinate to ubiquinone, GO:0006099 - tricarboxylic acid cycle, GO:0046872 - metal ion binding, GO:0045273 - respiratory chain complex II, GO:0016021 - integral to membrane, GO:0005749 - mitochondrial respiratory chain complex II		
20546	XA40		XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 40	Xanthomonas oryzae pv. oryzae resistance 40, Xa40 candidate			11	Resistant to bacterial blight disease. Xa40(t) gene was defined by RM27320 and ID55.WA18-5 located on the BAC clone OSJNBa0036K13. Xa40(t) contains a (gene LOC_11g46900) encoding a wall-associated receptor kinase (WAK) 3 precursor.  LOC_Os11g46890 is more likely to be the true candidate for Xa40, though the possibility that LOC_Os11g46900 might also contribute to resistance jointly with LOC_Os11g46890 could not be excluded (Zhang et al. 2021).	 Tolerance and resistance - Disease resistance		LOC_Os11g46890.1	GR:0061188			GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
20547	ST2	ALR, OsDCD, DCD	STRIPE 2 	STRIPE2, albinic leaf and growth retardation, dCMP deaminase		st2, alr	1		 Reproductive organ - Heading date,  Coloration - Chlorophyll,  Seed - Morphological traits,  Reproductive organ - panicle,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Biochemical character	Os01g0765000	LOC_Os01g55974.1, LOC_Os01g55974.2, LOC_Os01g55974.3				GO:0010027 - thylakoid membrane organization, GO:0004132 - dCMP deaminase activity, GO:0005739 - mitochondrion, GO:0008270 - zinc ion binding, GO:0010020 - chloroplast fission, GO:0008284 - positive regulation of cell proliferation, GO:0045787 - positive regulation of cell cycle, GO:0006281 - DNA repair, GO:0016787 - hydrolase activity, GO:0015995 - chlorophyll biosynthetic process, GO:0009658 - chloroplast organization	TO:0000145 - internode length, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000137 - days to heading, TO:0000326 - leaf color, TO:0000346 - tiller number, TO:0000391 - seed size, TO:0002715 - chloroplast development trait, TO:0000040 - panicle length, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content	
20548	XA42	xa42	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 42			Xa42, xa42	3	Mutated recessive allele xa42 is resistant to Japanese race II in homozygous form. XA42 is located around the centromeric region of rice chromosome 3. XA42 gene was located in the 57 kb-chromosomal region between DNA markers KGC3_16.341 and KGC3_16.399. XA42 candidate genes: Os03g0401951, Os03g0402000, Os03g0402200, Os03g0402400, Os03g0402600, LOC_Os03g28430. (Busing et al. 2018)	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
20549	ROC6	Roc6(t), Roc6, GL2-6, OsHDZ32, OsHDZIP32, HDZ32, HDZIP32	RICE OUTMOST CELL-SPECIFIC GENE 6	Rice outmost cell -specific gene 6(t), Rice outermost cell-specific gene-6, Homeobox-leucine zipper protein ROC6, Homeodomain transcription factor ROC6, HD-ZIP protein ROC6, Protein RICE OUTERMOST CELL-SPECIFIC 6, GLABRA 2-like homeobox protein 6, Rice ooutmost cell-specific gene6, homeodomain-leucine zipper transcription factor 32, OsHDZIP transcription factor 32	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC6		9	AB101649. Q7Y0V7. A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). 	 Other,  Tolerance and resistance - Stress tolerance	Os09g0526200/Os09g0526300	LOC_Os09g35760.1	GR:0061421			GO:0009651 - response to salt stress, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0008289 - lipid binding, GO:0009741 - response to brassinosteroid stimulus, GO:0006351 - transcription, DNA-dependent	TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance	
20550	ROC7	Roc7(t), Roc7, GL2-7, OsHDZ22, OsHDZIP22, HDZ22, HDZIP22	RICE OUTMOST CELL-SPECIFIC GENE 7	Rice outmost cell -specific gene 7(t), Rice outermost cell-specific gene-7, Homeobox-leucine zipper protein ROC7, Homeodomain transcription factor ROC7, HD-ZIP protein ROC7, Protein RICE OUTERMOST CELL-SPECIFIC 7, GLABRA 2-like homeobox protein 7, Rice ooutmost cell-specific gene7, homeodomain-leucine zipper transcription factor 22, OsHDZIP transcription factor 22	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC7		8	AB101650. A3BPF2. A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). 	 Other,  Tolerance and resistance - Stress tolerance	Os08g0136100	LOC_Os08g04190.1	GR:0061422			GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009741 - response to brassinosteroid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0008289 - lipid binding	TO:0006001 - salt tolerance, TO:0002677 - brassinosteroid sensitivity	
20551	URL1	ROC8, Roc8(t), Roc8, OsROC8, GL2-8, CRM1, OsCRM1, Os URL1, OsHDZ20, OsHDZIP20, HDZ20, HDZIP20	UPWARD ROLLED LEAF 1	Rice outmost cell -specific gene 8(t), Rice outermost cell-specific gene-8, Homeobox-leucine zipper protein ROC8, Homeodomain transcription factor ROC8, HD-ZIP protein ROC8, Protein RICE OUTERMOST CELL-SPECIFIC 8, GLABRA 2-like homeobox protein 8, Rice ooutmost cell-specific gene8, upward rolled leaf1, homeodomain-leucine zipper transcription factor 20, OsHDZIP transcription factor 20	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8	roc8, roc8-m1, roc8-m2, crm1-D, Url1	6	MH822134, MH822135. AB101651. Q69T58. A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:1901141: regulation of lignin biosynthetic process. TO:0006064: rolled leaf. GO:0001216: DNA-binding transcription activator activity.	 Vegetative organ - Leaf,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Other	Os06g0208100	LOC_Os06g10600.1	GR:0061423			GO:0008289 - lipid binding, GO:0009741 - response to brassinosteroid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0002213 - defense response to insect, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0009809 - lignin biosynthetic process	TO:0000731 - lignin content, TO:0000261 - insect damage resistance, TO:0002677 - brassinosteroid sensitivity, TO:0006001 - salt tolerance, TO:0000424 - brown planthopper resistance	
20552	ROC9	Roc9(t), Roc9, GL2-9, OsGL2, GL2, OsHDZ2, HDZ2, OsHDZIP2, HDZIP2	RICE OUTMOST CELL-SPECIFIC GENE 9	Rice outmost cell -specific gene 9(t), Rice outermost cell-specific gene-9, Homeobox-leucine zipper protein ROC9, Homeodomain transcription factor ROC9, HD-ZIP protein ROC9, Protein RICE OUTERMOST CELL-SPECIFIC 9, GLABRA 2-like homeobox protein 9, Rice ooutmost cell-specific gene9, GLABRA2, GLABRA 2, homeodomain-leucine zipper transcription factor 2, OsHDZIP transcription factor 2	HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC9		1	AB101652. Q5JMF3. A GL2-type of homeobox gene. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. a homologue of Arabidopsis transcription factor GL2. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). 	 Other	Os01g0760800	LOC_Os01g55549.1	GR:0061424			GO:0006355 - regulation of transcription, DNA-dependent, GO:0009753 - response to jasmonic acid stimulus, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0008289 - lipid binding, GO:0043434 - response to peptide hormone stimulus	TO:0000172 - jasmonic acid sensitivity	
20553	RPT1A	OsRpt1a, Rpt1a	19S REGULATORY PARTICLE ATPASE SUBUNIT 1A	19S regulatory particle ATPase subunit 1a, RP triple A-ATPase 1a	19S REGULATORY PARTICLE ATPASE SUBUNIT 1A		6	a 19S regulatory particle subunit from the rice 26S proteasome. C99643, C99642. AB033535. Q9FXT9. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os06g0192600	LOC_Os06g09290.1, LOC_Os06g09290.2	GR:0061403			GO:0031597 - cytosolic proteasome complex, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0005524 - ATP binding, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0031595 - nuclear proteasome complex, GO:0030433 - ER-associated protein catabolic process, GO:0017025 - TATA-binding protein binding		
20554	RPT1B	OsRpt1b, Rpt1b	19S REGULATORY PARTICLE ATPASE SUBUNIT 1B	19S regulatory particle ATPase subunit 1b, RP triple A-ATPase 1b	19S REGULATORY PARTICLE ATPASE SUBUNIT 1B		2	a 19S regulatory particle subunit from the rice 26S proteasome. AU095286, AU031190. AB070252. Q9FXT9. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os02g0784700	LOC_Os02g54340.1, LOC_Os02g54340.2	GR:0061404			GO:0030433 - ER-associated protein catabolic process, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0031597 - cytosolic proteasome complex, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0005524 - ATP binding, GO:0031595 - nuclear proteasome complex, GO:0017025 - TATA-binding protein binding		
20555	RPT2B	OsRpt2b, Rpt2b	19S REGULATORY PARTICLE ATPASE SUBUNIT 2B	19S regulatory particle ATPase subunit 2b, RP triple A-ATPase 2b	19S REGULATORY PARTICLE ATPASE SUBUNIT 2B		3	a 19S regulatory particle subunit from the rice 26S proteasome. AU029637, AU029636. AB037154. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os03g0298400	LOC_Os03g18690.1	GR:0061406			GO:0017025 - TATA-binding protein binding, GO:0005524 - ATP binding, GO:0030433 - ER-associated protein catabolic process, GO:0031595 - nuclear proteasome complex, GO:0031597 - cytosolic proteasome complex, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0008233 - peptidase activity, GO:0008540 - proteasome regulatory particle, base subcomplex		
20556	RPT3	OsRpt3, Rpt3	19S REGULATORY PARTICLE ATPASE SUBUNIT 3	19S regulatory particle ATPase subunit 3, RP triple A-ATPase 3	19S REGULATORY PARTICLE ATPASE SUBUNIT 3		2	a 19S regulatory particle subunit from the rice 26S proteasome. AU165351, C98650. AB070253. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0325100	LOC_Os02g21970.1				GO:0009506 - plasmodesma, GO:0009407 - toxin catabolic process, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0007010 - cytoskeleton organization, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0006094 - gluconeogenesis, GO:0005618 - cell wall, GO:0017025 - TATA-binding protein binding, GO:0030433 - ER-associated protein catabolic process, GO:0031595 - nuclear proteasome complex, GO:0031597 - cytosolic proteasome complex, GO:0043090 - amino acid import, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0048767 - root hair elongation, GO:0051788 - response to misfolded protein, GO:0009414 - response to water deprivation, GO:0080129 - proteasome core complex assembly, GO:0009853 - photorespiration, GO:0009735 - response to cytokinin stimulus, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0006635 - fatty acid beta-oxidation	TO:0000276 - drought tolerance	
20557	RPT4A	OsRpt4a, Rpt4a	19S REGULATORY PARTICLE ATPASE SUBUNIT 4A	19S regulatory particle ATPase subunit 4a, RP triple A-ATPase 4a	19S REGULATORY PARTICLE ATPASE SUBUNIT 4A		2	a 19S regulatory particle subunit from the rice 26S proteasome. AU165351, C98650. AB070253. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os02g0199900	LOC_Os02g10640.1	GR:0061407			GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0017025 - TATA-binding protein binding, GO:0048236 - plant-type spore development, GO:0031597 - cytosolic proteasome complex, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly, GO:0031595 - nuclear proteasome complex, GO:0030433 - ER-associated protein catabolic process, GO:0005524 - ATP binding, GO:0005634 - nucleus	TO:0000727 - sporogenesis	
20558	RPT4B	OsRpt4b, Rpt4b	19S REGULATORY PARTICLE ATPASE SUBUNIT 4B	19S regulatory particle ATPase subunit 4b, RP triple A-ATPase 4b	19S REGULATORY PARTICLE ATPASE SUBUNIT 4B		6	a 19S regulatory particle subunit from the rice 26S proteasome. D24881. AB070254. 	 Biochemical character	Os06g0607800	LOC_Os06g40560.1	GR:0061408			GO:0005737 - cytoplasm, GO:0016787 - hydrolase activity, GO:0030163 - protein catabolic process, GO:0000502 - proteasome complex, GO:0005524 - ATP binding		
20559	RPT6	OsRpt6, Rpt6	19S REGULATORY PARTICLE ATPASE SUBUNIT 6	19S regulatory particle ATPase subunit 6, RP triple A-ATPase 6	19S REGULATORY PARTICLE ATPASE SUBUNIT 6		2	a 19S regulatory particle subunit from the rice 26S proteasome. D24184. AB033537. GO:0036402: proteasome-activating ATPase activity. GO:1901800: positive regulation of proteasomal protein catabolic process.	 Biochemical character	Os02g0205300	LOC_Os02g11050.1				GO:0031597 - cytosolic proteasome complex, GO:0048236 - plant-type spore development, GO:0005524 - ATP binding, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0017025 - TATA-binding protein binding, GO:0030433 - ER-associated protein catabolic process, GO:0031595 - nuclear proteasome complex, GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	TO:0000727 - sporogenesis	
20560	RPN1A	OsRpn1a, Rpn1a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A	19S regulatory particle non-ATPase subunit 1a, RP non-ATPase 1a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A		9	a 19S regulatory particle subunit from the rice 26S proteasome. AU183790, C74601. AB070255. 	 Biochemical character	Os09g0326800	LOC_Os09g15750.1	GR:0061389			GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0000502 - proteasome complex, GO:0034515 - proteasome storage granule, GO:0008540 - proteasome regulatory particle, base subcomplex		
20561	RPN1B	OsRpn1b, Rpn1b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1B	19S regulatory particle non-ATPase subunit 1b, RP non-ATPase 1b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1B		6	a 19S regulatory particle subunit from the rice 26S proteasome. AB070256. 	 Biochemical character	Os06g0699900	LOC_Os06g48640.1, LOC_Os06g48640.2, LOC_Os06g48640.3	GR:0061390			GO:0005634 - nucleus, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0034515 - proteasome storage granule		
20562	RPN2A	OsRpn2a, Rpn2a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2A	19S regulatory particle non-ATPase subunit 2a, RP non-ATPase 2a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2A		8	a 19S regulatory particle subunit from the rice 26S proteasome. C72615. AB070257. 	 Biochemical character	Os08g0224700	LOC_Os08g12820.1, LOC_Os08g12820.2	GR:0061391			GO:0030234 - enzyme regulator activity, GO:0034515 - proteasome storage granule, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0000502 - proteasome complex, GO:0042176 - regulation of protein catabolic process, GO:0016021 - integral to membrane, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0005634 - nucleus		
20563	RPN2B	OsRpn2b, Rpn2b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2B	19S regulatory particle non-ATPase subunit 2b, RP non-ATPase 2b	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2B		4	a 19S regulatory particle subunit from the rice 26S proteasome. D22019. 	 Biochemical character	Os04g0608500	LOC_Os04g51910.1	GR:0061392			GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0016021 - integral to membrane, GO:0005634 - nucleus, GO:0034515 - proteasome storage granule		
20564	RPN3	OsRpn3, Rpn3	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 3	19S regulatory particle non-ATPase subunit 3, RP non-ATPase 3	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 3		8	a 19S regulatory particle subunit from the rice 26S proteasome. AU092071, D22137. AB070258. 	 Biochemical character	Os08g0550100	LOC_Os08g43640.1, LOC_Os08g43640.2, LOC_Os08g43640.3	GR:0061393			GO:0030234 - enzyme regulator activity, GO:0000502 - proteasome complex, GO:0042176 - regulation of protein catabolic process		
20565	RPN5	OsRpn5, Rpn5	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5	19S regulatory particle non-ATPase subunit 5, RP non-ATPase 5	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5		3	a 19S regulatory particle subunit from the rice 26S proteasome. AU056140, AU056139. AB070259. 	 Biochemical character	Os03g0851300	LOC_Os03g63430.1, LOC_Os03g63430.2	GR:0061394			GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0008541 - proteasome regulatory particle, lid subcomplex, GO:0031595 - nuclear proteasome complex		
20566	RPN6	OsRpn6, Rpn6	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 6	19S regulatory particle non-ATPase subunit 6, RP non-ATPase 6	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 6		4	a 19S regulatory particle subunit from the rice 26S proteasome. C98202. AB070260. 	 Biochemical character	Os04g0444600	LOC_Os04g36700.1	GR:0061395			GO:0000502 - proteasome complex		
20567	RPN8	OsRpn8, Rpn8	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 8	19S regulatory particle non-ATPase subunit 8, RP non-ATPase 8	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 8		4	a 19S regulatory particle subunit from the rice 26S proteasome. AB037150. 	 Biochemical character	Os04g0661900	LOC_Os04g56646.1	GR:0061397			GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0000502 - proteasome complex		
20568	RPN9A	OsRpn9a, Rpn9a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9A	19S regulatory particle non-ATPase subunit 9a, RP non-ATPase 9a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9A		1	a 19S regulatory particle subunit from the rice 26S proteasome. C96925, C26812. AB070261. 	 Biochemical character	Os01g0511300	LOC_Os01g32800.1, LOC_Os01g32800.2	GR:0061398			GO:0005198 - structural molecule activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0000502 - proteasome complex, GO:0043248 - proteasome assembly, GO:0008541 - proteasome regulatory particle, lid subcomplex		
20569	RPN9B	OsRpn9b, Rpn9b, RPN9a	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9B	19S regulatory particle non-ATPase subunit 9b, RP non-ATPase 9b, 26S proteasome subunit RPN9a, 26S proteasome non-ATPase regulatory subunit 13	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9B		3	a 19S regulatory particle subunit from the rice 26S proteasome. AU031759, D24224. AB070262. a pivotal candidate gene for qLTG3a (QTL for Low-temperature germinability).  RPN9a in Pan et al. 2021.	 Biochemical character	Os03g0214600	LOC_Os03g11570.1	GR:0061399			GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005829 - cytosol, GO:0008541 - proteasome regulatory particle, lid subcomplex, GO:0043248 - proteasome assembly, GO:0000502 - proteasome complex, GO:0005198 - structural molecule activity, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009010 - seed , PO:0009047 - stem , PO:0009005 - root 
20570	RPN11	OsRpn11, Rpn11	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 11	19S regulatory particle non-ATPase subunit 11, RP non-ATPase 11	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 11		1	a 19S regulatory particle subunit from the rice 26S proteasome. AU082102. AB037152. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0267200	LOC_Os01g16190.1	GR:0061401			GO:0008237 - metallopeptidase activity, GO:0008541 - proteasome regulatory particle, lid subcomplex, GO:0016579 - protein deubiquitination, GO:0000502 - proteasome complex, GO:0070628 - proteasome binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
20571	RPN12	OsRpn12, Rpn12	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 12	19S regulatory particle non-ATPase subunit 12, RP non-ATPase 12	19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 12		7	a 19S regulatory particle subunit from the rice 26S proteasome. AU165469, C72243. AB037153. 	 Biochemical character	Os07g0435100	LOC_Os07g25420.1, LOC_Os07g25420.2	GR:0061402			GO:0005829 - cytosol, GO:0008541 - proteasome regulatory particle, lid subcomplex, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0043248 - proteasome assembly, GO:0005634 - nucleus		
20572	P107-E1		SMALL INTERFERING RNA P107-E1	siRNA P107-E1				P107-E1 has 17 loci on chromosome 1, 2, 3, 4, 7, 8, 9, 11, 12.	 Other			GR:0100929			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009003 - sporophyte , PO:0009049 - inflorescence , PO:0009025 - vascular leaf 
20573	P88-A6		SMALL INTERFERING RNA P88-A6	siRNA P88-A6			1		 Other			GR:0101083			GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0009005 - root , PO:0009049 - inflorescence , PO:0009003 - sporophyte , PO:0009025 - vascular leaf 
20574	P107-G2		SMALL INTERFERING RNA P107-G2	siRNA P107-G2			1		 Other			GR:0100933			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20575	P100-B10		SMALL INTERFERING RNA P100-B10	siRNA P100-B10				P100-B10 has 21 loci on chromosome 1, 10, 11, 12.	 Other			GR:0100887			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20576	P72-A8		SMALL INTERFERING RNA P72-A8	siRNA P72-A8				P72-A8 has 2 loci on chromosome 3, 11.	 Other			GR:0101006			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20577	P83-C9		SMALL INTERFERING RNA P83-C9	siRNA P83-C9				P83-C9 has 17 loci on chromosome 2, 4, 5, 6, 11, 12.	 Other			GR:0101048			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20578	P81-B6		SMALL INTERFERING RNA P81-B6	siRNA P81-B6				P81-B6 has 2 loci on chromosome 1, 6.	 Other			GR:0101038			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0007094 - LP.01 one leaf visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20579	P108-F10		SMALL INTERFERING RNA P108-F10	siRNA P108-F10				P108-F10 has 2 loci on chromosome 8, 11.	 Other			GR:0100943			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20580	P7-A4		SMALL INTERFERING RNA P7-A4	siRNA P7-A4			11		 Other			GR:0101034			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20581	P71-G7		SMALL INTERFERING RNA P71-G7	siRNA P71-G7				P71-G7 has 6 loci on chromosome 1, 3, 4, 7, 11.	 Other			GR:0101004			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20582	P100-D3		SMALL INTERFERING RNA P100-D3	siRNA P100-D3				P100-D3 has 3 loci on chromosome 7, 9.	 Other			GR:0100888			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20583	P100-E1		SMALL INTERFERING RNA P100-E1	siRNA P100-E1			8		 Other			GR:0100889			GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20584	P100-F11		SMALL INTERFERING RNA P100-F11	siRNA P100-F11			8		 Other			GR:0100890			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20585	P100-H11		SMALL INTERFERING RNA P100-H11	siRNA P100-H11			11		 Other			GR:0100891			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20586	P101-A9		SMALL INTERFERING RNA P101-A9	siRNA P101-A9			2		 Other			GR:0100892			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20587	P101-B12		SMALL INTERFERING RNA P101-B12	siRNA P101-B12			1		 Other			GR:0100893			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20588	P101-B7		SMALL INTERFERING RNA P101-B7	siRNA P101-B7			5		 Other			GR:0100894			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20589	P101-C11		SMALL INTERFERING RNA P101-C11	siRNA P101-C11			4		 Other			GR:0100895			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20590	P101-G7		SMALL INTERFERING RNA P101-G7	siRNA P101-G7			2		 Other			GR:0100896			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20591	P101-H2		SMALL INTERFERING RNA P101-H2	siRNA P101-H2			6		 Other			GR:0100897			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20592	P1-02		SMALL INTERFERING RNA P1-02	siRNA P1-02			1		 Other			GR:0100898			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20593	P102-A5		SMALL INTERFERING RNA P102-A5	siRNA P102-A5			1		 Other			GR:0100899			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20594	P102-C12		SMALL INTERFERING RNA P102-C12	siRNA P102-C12				P102-C12 has 2 loci on chromosome 2, 4.	 Other			GR:0100900			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20595	P102-D7		SMALL INTERFERING RNA P102-D7	siRNA P102-D7			1		 Other			GR:0100901			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20596	P102-E6		SMALL INTERFERING RNA P102-E6	siRNA P102-E6			2		 Other			GR:0100902			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20597	P102-F10		SMALL INTERFERING RNA P102-F10	siRNA P102-F10				P102-F10 has 4 loci on chromosome 1, 2, 4, 7.	 Other			GR:0100903			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20598	P102-F11		SMALL INTERFERING RNA P102-F11	siRNA P102-F11			6		 Other			GR:0100904			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20599	P102-F3		SMALL INTERFERING RNA P102-F3	siRNA P102-F3			2		 Other			GR:0100905			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20600	P102-G9		SMALL INTERFERING RNA P102-G9	siRNA P102-G9			7		 Other			GR:0100906			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20601	P103-B2		SMALL INTERFERING RNA P103-B2	siRNA P103-B2				P103-B2 has 10 loci on chromosome 2, 3, 7, 8, 9, 11, 12.	 Other			GR:0100907			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009025 - vascular leaf , PO:0009003 - sporophyte , PO:0009049 - inflorescence 
20602	P103-F8		SMALL INTERFERING RNA P103-F8	siRNA P103-F8			6		 Other			GR:0100908			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20603	P103-G3		SMALL INTERFERING RNA P103-G3	siRNA P103-G3				P103-G3 has 5 loci on chromosome 1, 3, 4, 7, 8.	 Other			GR:0100909			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20604	P103-H2		SMALL INTERFERING RNA P103-H2	siRNA P103-H2			12		 Other			GR:0100910			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20605	P104-A10		SMALL INTERFERING RNA P104-A10	siRNA P104-A10				P104-A10 has 11 loci on chromosome 3, 4, 5, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0100911			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20606	P104-A3		SMALL INTERFERING RNA P104-A3	siRNA P104-A3			1		 Other			GR:0100912			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20607	P104-C7		SMALL INTERFERING RNA P104-C7	siRNA P104-C7			8		 Other			GR:0100913			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20608	P104-C8		SMALL INTERFERING RNA P104-C8	siRNA P104-C8				P104-C8 has 13 loci on chromosome 2, 7, 9, 10, 11, 12.	 Other			GR:0100914			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20609	P104-E2		SMALL INTERFERING RNA P104-E2	siRNA P104-E2			8		 Other			GR:0100915			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20610	P104-F1		SMALL INTERFERING RNA P104-F1	siRNA P104-F1			9		 Other			GR:0100916			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20611	P104-F8		SMALL INTERFERING RNA P104-F8	siRNA P104-F8			7		 Other			GR:0100917			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20612	P104-G7		SMALL INTERFERING RNA P104-G7	siRNA P104-G7				P104-G7 has 20 loci on chromosome 10, 11, 12.	 Other			GR:0100918			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009005 - root 
20613	P105-D8		SMALL INTERFERING RNA P105-D8	siRNA P105-D8			3		 Other			GR:0100919			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20614	P105-E10		SMALL INTERFERING RNA P105-E10	siRNA P105-E10			7		 Other			GR:0100920			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0007106 - LP.03 three leaves visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007115 - LP.04 four leaves visible stage 
20615	P105-G11		SMALL INTERFERING RNA P105-G11	siRNA P105-G11			6		 Other			GR:0100921			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20616	P105-H8		SMALL INTERFERING RNA P105-H8	siRNA P105-H8			2		 Other			GR:0100922			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20617	P106-B5		SMALL INTERFERING RNA P106-B5	siRNA P106-B5			8		 Other			GR:0100923			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20618	P106-E12		SMALL INTERFERING RNA P106-E12	siRNA P106-E12			7		 Other			GR:0100924			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20619	P106-F8		SMALL INTERFERING RNA P106-F8	siRNA P106-F8				P106-F8 has 9 loci on chromosome 1, 2, 3, 6, 7.	 Other			GR:0100925			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0007115 - LP.04 four leaves visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage 
20620	P106-G11		SMALL INTERFERING RNA P106-G11	siRNA P106-G11				P106-G11 has 4 loci on chromosome 1, 5, 10, 11.	 Other			GR:0100926			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20621	P107-A9		SMALL INTERFERING RNA P107-A9	siRNA P107-A9			6		 Other			GR:0100927			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20622	P107-B10		SMALL INTERFERING RNA P107-B10	siRNA P107-B10			12		 Other			GR:0100928			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20623	P107-E2		SMALL INTERFERING RNA P107-E2	siRNA P107-E2				P107-E2 has 13 loci on chromosome 8, 9, 10, 11, 12.	 Other			GR:0100930			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20624	P107-F1		SMALL INTERFERING RNA P107-F1	siRNA P107-F1			6		 Other			GR:0100931			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20625	P107-F10		SMALL INTERFERING RNA P107-F10	siRNA P107-F10			5		 Other			GR:0100932			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage 
20626	P107-H11		SMALL INTERFERING RNA P107-H11	siRNA P107-H11			8		 Other			GR:0100934			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20627	P107-H12		SMALL INTERFERING RNA P107-H12	siRNA P107-H12			11		 Other			GR:0100935			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20628	P107-H3		SMALL INTERFERING RNA P107-H3	siRNA P107-H3				P107-H3 has 2 loci on chromosome 1, 5.	 Other			GR:0100936			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0009049 - inflorescence 
20629	P108-A5		SMALL INTERFERING RNA P108-A5	siRNA P108-A5				P108-A5 has 4 loci on chromosome 1, 3, 8.	 Other			GR:0100937			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20630	P108-A7		SMALL INTERFERING RNA P108-A7	siRNA P108-A7			1		 Other			GR:0100938			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20631	P108-B2		SMALL INTERFERING RNA P108-B2	siRNA P108-B2			7		 Other			GR:0100939			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20632	P108-B7		SMALL INTERFERING RNA P108-B7	siRNA P108-B7			4		 Other			GR:0100940			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20633	P108-D1		SMALL INTERFERING RNA P108-D1	siRNA P108-D1			1		 Other			GR:0100941			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20634	P108-D3		SMALL INTERFERING RNA P108-D3	siRNA P108-D3				P108-D3 has 20 loci on chromosome 3, 5, 6, 8, 9, 10, 11, 12.	 Other			GR:0100942			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
20635	P108-F5		SMALL INTERFERING RNA P108-F5	siRNA P108-F5			11		 Other			GR:0100944			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20636	P108-G3		SMALL INTERFERING RNA P108-G3	siRNA P108-G3			11		 Other			GR:0100945			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20637	P108-H10		SMALL INTERFERING RNA P108-H10	siRNA P108-H10				P108-H10 has 4 loci on chromosome 3, 6, 12.	 Other			GR:0100946			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20638	P108-H5		SMALL INTERFERING RNA P108-H5	siRNA P108-H5				P108-H5 has 2 loci on chromosome 7, 11.	 Other			GR:0100947			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0007115 - LP.04 four leaves visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage 
20639	P109-A11		SMALL INTERFERING RNA P109-A11	siRNA P109-A11			4		 Other			GR:0100948			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20640	P109-C6		SMALL INTERFERING RNA P109-C6	siRNA P109-C6			12		 Other			GR:0100949			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20641	P109-D12		SMALL INTERFERING RNA P109-D12	siRNA P109-D12			11	P109-D12 has 2 loci on chromosome 11.	 Other			GR:0100950			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20642	P109-E3		SMALL INTERFERING RNA P109-E3	siRNA P109-E3			2		 Other			GR:0100951			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20643	P109-F3		SMALL INTERFERING RNA P109-F3	siRNA P109-F3			11		 Other			GR:0100952			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20644	P15-A5		SMALL INTERFERING RNA P15-A5	siRNA P15-A5			12	P15-A5 has 20 loci on chromosome 12.	 Other			GR:0100953			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20645	P15-D7		SMALL INTERFERING RNA P15-D7	siRNA P15-D7			6		 Other			GR:0100954			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20646	P15-E7		SMALL INTERFERING RNA P15-E7	siRNA P15-E7			10		 Other			GR:0100955			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system , PO:0007041 - inflorescence emergence stage 
20647	P15-F8		SMALL INTERFERING RNA P15-F8	siRNA P15-F8				P15-F8 has 2 loci on chromosome 1, 6.	 Other			GR:0100956			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20648	P16-C3		SMALL INTERFERING RNA P16-C3	siRNA P16-C3				P16-C3 has 21 loci on chromosome 7, 8, 9, 10, 11, 12.	 Other			GR:0100957			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system , PO:0009003 - sporophyte , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009005 - root 
20649	P16-G8		SMALL INTERFERING RNA P16-G8	siRNA P16-G8			11	P16-G8 has  loci on chromosome 11.	 Other			GR:0100958			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20650	P17-F4		SMALL INTERFERING RNA P17-F4	siRNA P17-F4			6		 Other			GR:0100959			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009006 - shoot system 
20651	P18-F10		SMALL INTERFERING RNA P18-F10	siRNA P18-F10			10		 Other			GR:0100960			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20652	P1-B06		SMALL INTERFERING RNA P1-B06	siRNA P1-B06				P1-B06 has 7 loci on chromosome 3, 4, 7, 8, 11, 12.	 Other			GR:0100961			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20653	P1-C04		SMALL INTERFERING RNA P1-C04	siRNA P1-C04				P1-C04 has 20 loci on chromosome 10, 11, 12.	 Other			GR:0100962			GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20654	P20-G5		SMALL INTERFERING RNA P20-G5	siRNA P20-G5			2		 Other			GR:0100963			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009006 - shoot system 
20655	P26-B8		SMALL INTERFERING RNA P26-B8	siRNA P26-B8			1		 Other			GR:0100964			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009006 - shoot system 
20656	P28-E3		SMALL INTERFERING RNA P28-E3	siRNA P28-E3				P28-E3 has 9 loci on chromosome 1, 6, 7, 8, 9, 10.	 Other			GR:0100965			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20657	P29-A12		SMALL INTERFERING RNA P29-A12	siRNA P29-A12			3		 Other			GR:0100966			GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20658	P30-A8		SMALL INTERFERING RNA P30-A8	siRNA P30-A8			3		 Other			GR:0100967			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20659	P30-G4		SMALL INTERFERING RNA P30-G4	siRNA P30-G4			2		 Other			GR:0100968			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0009006 - shoot system 
20660	P30-G6		SMALL INTERFERING RNA P30-G6	siRNA P30-G6			11		 Other			GR:0100969			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0007098 - LP.02 two leaves visible stage , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0009006 - shoot system 
20661	P31-G9		SMALL INTERFERING RNA P31-G9	siRNA P31-G9				P31-G9 has 7 loci on chromosome 2, 6, 7, 8, 12.	 Other			GR:0100970			GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20662	P33-A2		SMALL INTERFERING RNA P33-A2	siRNA P33-A2			7		 Other			GR:0100971			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20663	P33-D12		SMALL INTERFERING RNA P33-D12	siRNA P33-D12			5		 Other			GR:0100972			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20664	P33-G4		SMALL INTERFERING RNA P33-G4	siRNA P33-G4			3		 Other			GR:0100973			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20665	P33-H10		SMALL INTERFERING RNA P33-H10	siRNA P33-H10			2		 Other			GR:0100974			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009006 - shoot system 
20666	P34-A10		SMALL INTERFERING RNA P34-A10	siRNA P34-A10			2		 Other			GR:0100975			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009005 - root 
20667	P35-D10		SMALL INTERFERING RNA P35-D10	siRNA P35-D10			9		 Other			GR:0100976			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence , PO:0009003 - sporophyte , PO:0009005 - root 
20668	P38-B7		SMALL INTERFERING RNA P38-B7	siRNA P38-B7			2		 Other			GR:0100977			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009005 - root 
20669	P40-D12		SMALL INTERFERING RNA P40-D12	siRNA P40-D12			8		 Other			GR:0100978			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009005 - root 
20670	P40-H12		SMALL INTERFERING RNA P40-H12	siRNA P40-H12				P40-H12 has 17 loci on chromosome 3, 5, 6, 7, 9, 10, 11, 12.	 Other			GR:0100979			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0007106 - LP.03 three leaves visible stage , PO:0009003 - sporophyte , PO:0009005 - root , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007115 - LP.04 four leaves visible stage 
20671	P46-C11		SMALL INTERFERING RNA P46-C11	siRNA P46-C11			6		 Other			GR:0100980			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009005 - root 
20672	P49-E4		SMALL INTERFERING RNA P49-E4	siRNA P49-E4				P49-E4 has 2 loci on chromosome 1, 5.	 Other			GR:0100981			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009005 - root 
20673	P4-D6		SMALL INTERFERING RNA P4-D6	siRNA P4-D6			3		 Other			GR:0100982			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009005 - root , PO:0009003 - sporophyte , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009006 - shoot system 
20674	P4-G9		SMALL INTERFERING RNA P4-G9	siRNA P4-G9			11		 Other			GR:0100983			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009006 - shoot system 
20675	P50-B5		SMALL INTERFERING RNA P50-B5	siRNA P50-B5			5		 Other			GR:0100984			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009005 - root 
20676	P52-C8		SMALL INTERFERING RNA P52-C8	siRNA P52-C8			5		 Other			GR:0100985			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009005 - root 
20677	P56-B2		SMALL INTERFERING RNA P56-B2	siRNA P56-B2			6		 Other			GR:0100986			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20678	P56-D5		SMALL INTERFERING RNA P56-D5	siRNA P56-D5			1		 Other			GR:0100987			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20679	P56-E5		SMALL INTERFERING RNA P56-E5	siRNA P56-E5			6	P56-E5 has 2 loci on chromosome 6.	 Other			GR:0100988			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20680	P56-H4		SMALL INTERFERING RNA P56-H4	siRNA P56-H4				P56-H4 has 4 loci on chromosome 1, 2, 6.	 Other			GR:0100989			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009003 - sporophyte , PO:0009049 - inflorescence , PO:0009005 - root 
20681	P5-B6		SMALL INTERFERING RNA P5-B6	siRNA P5-B6			12		 Other			GR:0100990			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009006 - shoot system 
20682	P5-C5		SMALL INTERFERING RNA P5-C5	siRNA P5-C5			2		 Other			GR:0100991			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009006 - shoot system 
20683	P5-D6		SMALL INTERFERING RNA P5-D6	siRNA P5-D6			3		 Other			GR:0100992			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009006 - shoot system 
20684	P60-F7		SMALL INTERFERING RNA P60-F7	siRNA P60-F7				P60-F7 has 20 loci on chromosome 9, 11, 12.	 Other			GR:0100993			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0007115 - LP.04 four leaves visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage 
20685	P61-A1		SMALL INTERFERING RNA P61-A1	siRNA P61-A1			7		 Other			GR:0100994			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20686	P63-A8		SMALL INTERFERING RNA P63-A8	siRNA P63-A8				P63-A8 has 2 loci on chromosome 5, 8.	 Other			GR:0100995			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20687	P63-E1		SMALL INTERFERING RNA P63-E1	siRNA P63-E1				P63-E1 has 11 loci on chromosome 3, 5, 8, 9, 10, 11, 12.	 Other			GR:0100996			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20688	P63-G7		SMALL INTERFERING RNA P63-G7	siRNA P63-G7			4		 Other			GR:0100997			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage 
20689	P65-B8		SMALL INTERFERING RNA P65-B8	siRNA P65-B8			2		 Other			GR:0100998			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20690	P66-B12		SMALL INTERFERING RNA P66-B12	siRNA P66-B12			4		 Other			GR:0100999			GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20691	P67-B5		SMALL INTERFERING RNA P67-B5	siRNA P67-B5			4		 Other			GR:0101000			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20692	P68-H2		SMALL INTERFERING RNA P68-H2	siRNA P68-H2			8		 Other			GR:0101001			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20693	P6-A9		SMALL INTERFERING RNA P6-A9	siRNA P6-A9			6		 Other			GR:0101002			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009025 - vascular leaf , PO:0009006 - shoot system 
20694	P70-D1		SMALL INTERFERING RNA P70-D1	siRNA P70-D1			7		 Other			GR:0101003			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20695	P71-H12		SMALL INTERFERING RNA P71-H12	siRNA P71-H12			5		 Other			GR:0101005			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20696	P72-E1		SMALL INTERFERING RNA P72-E1	siRNA P72-E1			1		 Other			GR:0101007			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20697	P72-E12		SMALL INTERFERING RNA P72-E12	siRNA P72-E12				P72-E12 has 21 loci on chromosome 8, 9, 11, 12.	 Other			GR:0101008			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20698	P72-F7		SMALL INTERFERING RNA P72-F7	siRNA P72-F7			6		 Other			GR:0101009			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20699	P72-G12		SMALL INTERFERING RNA P72-G12	siRNA P72-G12			4		 Other			GR:0101010			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20700	P72-H3		SMALL INTERFERING RNA P72-H3	siRNA P72-H3			6		 Other			GR:0101011			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20701	P72-H5		SMALL INTERFERING RNA P72-H5	siRNA P72-H5			2		 Other			GR:0101012			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20702	P75-C1		SMALL INTERFERING RNA P75-C1	siRNA P75-C1				P75-C1 has 2 loci on chromosome 2, 12.	 Other			GR:0101013			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20703	P75-D3		SMALL INTERFERING RNA P75-D3	siRNA P75-D3				P75-D3 has 4 loci on chromosome 1, 6, 8.	 Other			GR:0101014			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20704	P76-B12		SMALL INTERFERING RNA P76-B12	siRNA P76-B12			10		 Other			GR:0101015			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20705	P76-D11		SMALL INTERFERING RNA P76-D11	siRNA P76-D11			3		 Other			GR:0101016			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20706	P76-G8		SMALL INTERFERING RNA P76-G8	siRNA P76-G8			4		 Other			GR:0101017			GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20707	P76-H3		SMALL INTERFERING RNA P76-H3	siRNA P76-H3			5		 Other			GR:0101018			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20708	P77-B10		SMALL INTERFERING RNA P77-B10	siRNA P77-B10			12		 Other			GR:0101019			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20709	P77-C11		SMALL INTERFERING RNA P77-C11	siRNA P77-C11			10		 Other			GR:0101020			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20710	P77-C12		SMALL INTERFERING RNA P77-C12	siRNA P77-C12			6		 Other			GR:0101021			GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20711	P77-D6		SMALL INTERFERING RNA P77-D6	siRNA P77-D6			1		 Other			GR:0101022			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20712	P77-F8		SMALL INTERFERING RNA P77-F8	siRNA P77-F8				P77-F8 has 21 loci on chromosome 3, 4, 5, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0101023			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20713	P77-G8		SMALL INTERFERING RNA P77-G8	siRNA P77-G8			2		 Other			GR:0101024			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20714	P77-H6		SMALL INTERFERING RNA P77-H6	siRNA P77-H6			12		 Other			GR:0101025			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20715	P78-C6		SMALL INTERFERING RNA P78-C6	siRNA P78-C6			4		 Other			GR:0101026			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20716	P78-E8		SMALL INTERFERING RNA P78-E8	siRNA P78-E8				P78-E8 has 2 loci on chromosome 11, 12.	 Other			GR:0101027			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20717	P79-B1		SMALL INTERFERING RNA P79-B1	siRNA P79-B1			1		 Other			GR:0101028			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20718	P79-D15		SMALL INTERFERING RNA P79-D15	siRNA P79-D15			1	P79-D15 has 3 loci on chromosome 1.	 Other			GR:0101029			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20719	P79-E1		SMALL INTERFERING RNA P79-E1	siRNA P79-E1				P79-E1  has 17 loci on chromosome 3, 4, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0101030			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence , PO:0007115 - LP.04 four leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007041 - inflorescence emergence stage 
20720	P79-E11		SMALL INTERFERING RNA P79-E11	siRNA P79-E11			7		 Other			GR:0101031			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20721	P79-E7		SMALL INTERFERING RNA P79-E7	siRNA P79-E7			9		 Other			GR:0101032			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20722	P79-H4		SMALL INTERFERING RNA P79-H4	siRNA P79-H4				P79-H4 has 17 loci on chromosome 1, 2, 8, 9, 10, 11, 12.	 Other			GR:0101033			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20723	P7-E5		SMALL INTERFERING RNA P7-E5	siRNA P7-E5			12		 Other			GR:0101035			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009006 - shoot system 
20724	P80-B3		SMALL INTERFERING RNA P80-B3	siRNA P80-B3			4		 Other			GR:0101036			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20725	P81-B3		SMALL INTERFERING RNA P81-B3	siRNA P81-B3			3		 Other			GR:0101037			GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20726	P81-C7		SMALL INTERFERING RNA P81-C7	siRNA P81-C7			10	P81-C7 has 2 loci on chromosome 10.	 Other			GR:0101039			GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20727	P81-F4		SMALL INTERFERING RNA P81-F4	siRNA P81-F4				P81-F4 has 9 loci on chromosome 1, 2, 3, 6, 7, 9.	 Other			GR:0101040			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20728	P81-G1		SMALL INTERFERING RNA P81-G1	siRNA P81-G1			1		 Other			GR:0101041			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20729	P81-G4		SMALL INTERFERING RNA P81-G4	siRNA P81-G4			10		 Other			GR:0101042			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20730	P81-H7		SMALL INTERFERING RNA P81-H7	siRNA P81-H7			12		 Other			GR:0101043			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20731	P82-E5		SMALL INTERFERING RNA P82-E5	siRNA P82-E5				P82-E5 has 14 loci on chromosome 3, 8, 9, 10, 11, 12.	 Other			GR:0101044			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20732	P82-F7		SMALL INTERFERING RNA P82-F7	siRNA P82-F7			5		 Other			GR:0101045			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20733	P83-A5		SMALL INTERFERING RNA P83-A5	siRNA P83-A5			12		 Other			GR:0101046			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20734	P83-B2		SMALL INTERFERING RNA P83-B2	siRNA P83-B2			2		 Other			GR:0101047			GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20735	P83-D4		SMALL INTERFERING RNA P83-D4	siRNA P83-D4			12		 Other			GR:0101049			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0007041 - inflorescence emergence stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007094 - LP.01 one leaf visible stage , PO:0009049 - inflorescence , PO:0007115 - LP.04 four leaves visible stage 
20736	P83-D5		SMALL INTERFERING RNA P83-D5	siRNA P83-D5			12		 Other			GR:0101050			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20737	P83-G5		SMALL INTERFERING RNA P83-G5	siRNA P83-G5				P83-G5 has 9 loci on chromosome 1, 3, 6, 10, 11, 12.	 Other			GR:0101051			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20738	P83-H10		SMALL INTERFERING RNA P83-H10	siRNA P83-H10			10		 Other			GR:0101052			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20739	P83-H4		SMALL INTERFERING RNA P83-H4	siRNA P83-H4				P83-H4 has 3 loci on chromosome 2, 6, 12.	 Other			GR:0101053			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20740	P84-C2		SMALL INTERFERING RNA P84-C2	siRNA P84-C2				P84-C2 has 2 loci on chromosome 1, 11.	 Other			GR:0101054			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20741	P84-D12		SMALL INTERFERING RNA P84-D12	siRNA P84-D12			11		 Other			GR:0101055			GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20742	P84-F11		SMALL INTERFERING RNA P84-F11	siRNA P84-F11				P84-F11 has 4 loci on chromosome 3, 5, 9.	 Other			GR:0101056			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20743	P84-H3		SMALL INTERFERING RNA P84-H3	siRNA P84-H3			6		 Other			GR:0101057			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20744	P84-H4		SMALL INTERFERING RNA P84-H4	siRNA P84-H4			2		 Other			GR:0101058			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20745	P84-H5		SMALL INTERFERING RNA P84-H5	siRNA P84-H5			6		 Other			GR:0101059			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20746	P84-H6		SMALL INTERFERING RNA P84-H6	siRNA P84-H6			5		 Other			GR:0101060			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20747	P85-B1		SMALL INTERFERING RNA P85-B1	siRNA P85-B1				P85-B1 has 6 loci on chromosome 1, 2, 8, 12.	 Other			GR:0101061			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20748	P85-B12		SMALL INTERFERING RNA P85-B12	siRNA P85-B12			7		 Other			GR:0101062			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20749	P85-B2		SMALL INTERFERING RNA P85-B2	siRNA P85-B2			6	P85-B2 has 2 loci on chromosome 6.	 Other			GR:0101063			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20750	P85-B9		SMALL INTERFERING RNA P85-B9	siRNA P85-B9			11		 Other			GR:0101064			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20751	P85-C7		SMALL INTERFERING RNA P85-C7	siRNA P85-C7			12		 Other			GR:0101065			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20752	P85-D8		SMALL INTERFERING RNA P85-D8	siRNA P85-D8			10		 Other			GR:0101066			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20753	P85-F2		SMALL INTERFERING RNA P85-F2	siRNA P85-F2			4	P85-F2 has 2 loci on chromosome 4.	 Other			GR:0101067			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20754	P85-F8		SMALL INTERFERING RNA P85-F8	siRNA P85-F8			3		 Other			GR:0101068			GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20755	P86-A3		SMALL INTERFERING RNA P86-A3	siRNA P86-A3				P86-A3 has 4 loci on chromosome 4, 6, 10.	 Other			GR:0101069			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20756	P86-D6		SMALL INTERFERING RNA P86-D6	siRNA P86-D6			5		 Other			GR:0101070			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20757	P86-E3		SMALL INTERFERING RNA P86-E3	siRNA P86-E3			2		 Other			GR:0101071			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20758	P86-E8		SMALL INTERFERING RNA P86-E8	siRNA P86-E8			5		 Other			GR:0101072			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20759	P86-F9		SMALL INTERFERING RNA P86-F9	siRNA P86-F9				P86-F9 has 2 loci on chromosome 11, 12.	 Other			GR:0101073			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20760	P86-G10		SMALL INTERFERING RNA P86-G10	siRNA P86-G10				P86-G10 has 4 loci on chromosome , 2, 3, 4, 11.	 Other			GR:0101074			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20761	P86-H10		SMALL INTERFERING RNA P86-H10	siRNA P86-H10			8		 Other			GR:0101075			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009003 - sporophyte 
20762	P87-A3		SMALL INTERFERING RNA P87-A3	siRNA P87-A3			12		 Other			GR:0101076			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage 
20763	P87-B1		SMALL INTERFERING RNA P87-B1	siRNA P87-B1			2		 Other			GR:0101077			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20764	P87-C2		SMALL INTERFERING RNA P87-C2	siRNA P87-C2			7		 Other			GR:0101078			GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20765	P87-C5		SMALL INTERFERING RNA P87-C5	siRNA P87-C5			1		 Other			GR:0101079			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20766	P87-G9		SMALL INTERFERING RNA P87-G9	siRNA P87-G9			6		 Other			GR:0101080			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20767	P87-H6		SMALL INTERFERING RNA P87-H6	siRNA P87-H6			3		 Other			GR:0101081			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20768	P88-A11		SMALL INTERFERING RNA P88-A11	siRNA P88-A11				P88-A11 has 13 loci on chromosome 3, 4, 10, 11, 12.	 Other			GR:0101082			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009003 - sporophyte , PO:0009049 - inflorescence 
20769	P88-B4		SMALL INTERFERING RNA P88-B4	siRNA P88-B4			12		 Other			GR:0101084			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20770	P88-C3		SMALL INTERFERING RNA P88-C3	siRNA P88-C3			1		 Other			GR:0101085			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20771	P88-F10		SMALL INTERFERING RNA P88-F10	siRNA P88-F10			12		 Other			GR:0101086			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20772	P88-F11		SMALL INTERFERING RNA P88-F11	siRNA P88-F11			11		 Other			GR:0101087			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20773	P88-H6		SMALL INTERFERING RNA P88-H6	siRNA P88-H6			4		 Other			GR:0101088			GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20774	P89-B12		SMALL INTERFERING RNA P89-B12	siRNA P89-B12			2		 Other			GR:0101089			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20775	P89-B2		SMALL INTERFERING RNA P89-B2	siRNA P89-B2				P89-B2 has 10 loci on chromosome 1, 2, 3, 5, 6.	 Other			GR:0101090			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0007094 - LP.01 one leaf visible stage , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage 
20776	P89-C3		SMALL INTERFERING RNA P89-C3	siRNA P89-C3			10		 Other			GR:0101091			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20777	P89-D4		SMALL INTERFERING RNA P89-D4	siRNA P89-D4			5		 Other			GR:0101092			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20778	P89-E12		SMALL INTERFERING RNA P89-E12	siRNA P89-E12				P89-E12 has 2 loci on chromosome 10.	 Other			GR:0101093			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20779	P89-E2		SMALL INTERFERING RNA P89-E2	siRNA P89-E2			7		 Other			GR:0101094			GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20780	P89-E6		SMALL INTERFERING RNA P89-E6	siRNA P89-E6				P89-E6 has 2 loci on chromosome 1, 2.	 Other			GR:0101095			GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20781	P89-F12		SMALL INTERFERING RNA P89-F12	siRNA P89-F12			9		 Other			GR:0101096			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20782	P89-F6		SMALL INTERFERING RNA P89-F6	siRNA P89-F6			10		 Other			GR:0101097			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20783	P89-G12		SMALL INTERFERING RNA P89-G12	siRNA P89-G12			1		 Other			GR:0101098			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009005 - root , PO:0009025 - vascular leaf , PO:0009049 - inflorescence 
20784	P89-G8		SMALL INTERFERING RNA P89-G8	siRNA P89-G8			2		 Other			GR:0101099			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence 
20785	P89-H1		SMALL INTERFERING RNA P89-H1	siRNA P89-H1			5		 Other			GR:0101100			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20786	P89-H4		SMALL INTERFERING RNA P89-H4	siRNA P89-H4			6		 Other			GR:0101101			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20787	P89-H6		SMALL INTERFERING RNA P89-H6	siRNA P89-H6			12		 Other			GR:0101102			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20788	P8-C12		SMALL INTERFERING RNA P8-C12	siRNA P8-C12			1		 Other			GR:0101103			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20789	P8-E2		SMALL INTERFERING RNA P8-E2	siRNA P8-E2			11		 Other			GR:0101104			GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0016246 - RNA interference		PO:0009003 - sporophyte , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009006 - shoot system 
20790	P8-F8		SMALL INTERFERING RNA P8-F8	siRNA P8-F8				P8-F8 has 10 loci on chromosome 4, 5, 6, 7, 8, 10.	 Other			GR:0101105			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009006 - shoot system 
20791	P8-G3		SMALL INTERFERING RNA P8-G3	siRNA P8-G3				P8-G3 has 5 loci on chromosome 1, 4, 6, 10, 12.	 Other			GR:0101106			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0005634 - nucleus		PO:0009006 - shoot system 
20792	P90-A12		SMALL INTERFERING RNA P90-A12	siRNA P90-A12			11		 Other			GR:0101107			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20793	P90-A5		SMALL INTERFERING RNA P90-A5	siRNA P90-A5			6		 Other			GR:0101108			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20794	P90-B6		SMALL INTERFERING RNA P90-B6	siRNA P90-B6				P90-B6 has 13 loci on chromosome 2, 4, 5, 7, 8, 9, 12.	 Other			GR:0101109			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20795	P90-B8		SMALL INTERFERING RNA P90-B8	siRNA P90-B8				P90-B8 has 12 loci on chromosome 10, 11, 12.	 Other			GR:0101110			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20796	P90-B9		SMALL INTERFERING RNA P90-B9	siRNA P90-B9			4		 Other			GR:0101111			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20797	P91-A1		SMALL INTERFERING RNA P91-A1	siRNA P91-A1				P91-A1 has 2 loci on chromosome 3, 7.	 Other			GR:0101112			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20798	P91-A11		SMALL INTERFERING RNA P91-A11	siRNA P91-A11			11		 Other			GR:0101113			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence , PO:0009003 - sporophyte , PO:0009025 - vascular leaf , PO:0009005 - root 
20799	P91-A5		SMALL INTERFERING RNA P91-A5	siRNA P91-A5				P91-A5 has 14 loci on chromosome 2, 3, 4, 5, 7, 8, 9, 10, 11.	 Other			GR:0101114			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20800	P91-C7		SMALL INTERFERING RNA P91-C7	siRNA P91-C7			1		 Other			GR:0101115			GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20801	P91-D8		SMALL INTERFERING RNA P91-D8	siRNA P91-D8			5		 Other			GR:0101116			GO:0016246 - RNA interference, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20802	P91-D9		SMALL INTERFERING RNA P91-D9	siRNA P91-D9			6		 Other			GR:0101117			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20803	P91-E11		SMALL INTERFERING RNA P91-E11	siRNA P91-E11			2		 Other			GR:0101118			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20804	P91-E4		SMALL INTERFERING RNA P91-E4	siRNA P91-E4			10		 Other			GR:0101119			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20805	P91-F12		SMALL INTERFERING RNA P91-F12	siRNA P91-F12			9	P91-F12 has 2 loci on chromosome 9.	 Other			GR:0101120			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20806	P91-H7		SMALL INTERFERING RNA P91-H7	siRNA P91-H7			2		 Other			GR:0101121			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20807	P92-A3		SMALL INTERFERING RNA P92-A3	siRNA P92-A3			6		 Other			GR:0101122			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20808	P92-A9		SMALL INTERFERING RNA P92-A9	siRNA P92-A9			11		 Other			GR:0101123			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20809	P92-C3		SMALL INTERFERING RNA P92-C3	siRNA P92-C3			11		 Other			GR:0101124			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20810	P93-A5		SMALL INTERFERING RNA P93-A5	siRNA P93-A5				P93-A5 has 3 loci on chromosome 2, 3, 12.	 Other			GR:0101125			GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20811	P93-C6		SMALL INTERFERING RNA P93-C6	siRNA P93-C6			6		 Other			GR:0101126			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20812	P93-D6		SMALL INTERFERING RNA P93-D6	siRNA P93-D6			1		 Other			GR:0101127			GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20813	P93-G6		SMALL INTERFERING RNA P93-G6	siRNA P93-G6			7		 Other			GR:0101128			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20814	P93-H6		SMALL INTERFERING RNA P93-H6	siRNA P93-H6			2		 Other			GR:0101129			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20815	P94-A5		SMALL INTERFERING RNA P94-A5	siRNA P94-A5			3	P94-A5 has 2 loci on chromosome 3.	 Other			GR:0101130			GO:0016458 - gene silencing, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20816	P94-D12		SMALL INTERFERING RNA P94-D12	siRNA P94-D12			1	P94-D12 has 2 loci on chromosome 1.	 Other			GR:0101131			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20817	P94-E8		SMALL INTERFERING RNA P94-E8	siRNA P94-E8			9		 Other			GR:0101132			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20818	P94-G1		SMALL INTERFERING RNA P94-G1	siRNA P94-G1			5		 Other			GR:0101133			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20819	P95-D12		SMALL INTERFERING RNA P95-D12	siRNA P95-D12				P95-D12 has 3 loci on chromosome 1, 5, 12.	 Other			GR:0101134			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20820	P95-D5		SMALL INTERFERING RNA P95-D5	siRNA P95-D5			7		 Other			GR:0101135			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20821	P95-E5		SMALL INTERFERING RNA P95-E5	siRNA P95-E5				P95-E5 has 6 loci on chromosome 5, 6, 7, 8.	 Other			GR:0101136			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20822	P96-A3		SMALL INTERFERING RNA P96-A3	siRNA P96-A3			4		 Other			GR:0101137			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20823	P96-B3		SMALL INTERFERING RNA P96-B3	siRNA P96-B3			6		 Other			GR:0101138			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20824	P96-B9		SMALL INTERFERING RNA P96-B9	siRNA P96-B9			7		 Other			GR:0101139			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20825	P96-C4		SMALL INTERFERING RNA P96-C4	siRNA P96-C4			10		 Other			GR:0101140			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20826	P96-C9		SMALL INTERFERING RNA P96-C9	siRNA P96-C9			4		 Other			GR:0101141			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20827	P96-E12		SMALL INTERFERING RNA P96-E12	siRNA P96-E12				P96-E12 has 20 loci on chromosome 7, 8, 9, 10, 11, 12.	 Other			GR:0101142			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0007115 - LP.04 four leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0009025 - vascular leaf , PO:0009049 - inflorescence , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0007098 - LP.02 two leaves visible stage 
20828	P96-F7		SMALL INTERFERING RNA P96-F7	siRNA P96-F7			5		 Other			GR:0101143			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20829	P96-H6		SMALL INTERFERING RNA P96-H6	siRNA P96-H6			5		 Other			GR:0101144			GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20830	P97-A1		SMALL INTERFERING RNA P97-A1	siRNA P97-A1				P97-A1 has 10 loci on chromosome 1, 4, 5, 6, 8, 9, 11.	 Other			GR:0101145			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20831	P97-B2		SMALL INTERFERING RNA P97-B2	siRNA P97-B2			3		 Other			GR:0101146			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20832	P97-B5		SMALL INTERFERING RNA P97-B5	siRNA P97-B5			2		 Other			GR:0101147			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20833	P97-D1		SMALL INTERFERING RNA P97-D1	siRNA P97-D1			6		 Other			GR:0101148			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20834	P97-E3		SMALL INTERFERING RNA P97-E3	siRNA P97-E3			6	P97-E3 has 4 loci on chromosome 6.	 Other			GR:0101149			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20835	P97-E9		SMALL INTERFERING RNA P97-E9	siRNA P97-E9			8		 Other			GR:0101150			GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20836	P97-F12		SMALL INTERFERING RNA P97-F12	siRNA P97-F12			1		 Other			GR:0101151			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing		PO:0009049 - inflorescence 
20837	P97-F4		SMALL INTERFERING RNA P97-F4	siRNA P97-F4				P97-F4 has 6 loci on chromosome 3, 4, 5, 7, 11.	 Other			GR:0101152			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20838	P98-A8		SMALL INTERFERING RNA P98-A8	siRNA P98-A8			4		 Other			GR:0101153			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20839	P98-A9		SMALL INTERFERING RNA P98-A9	siRNA P98-A9				P98-A9 has 6 loci on chromosome 2, 4, 6, 8, 9, 12.	 Other			GR:0101154			GO:0016458 - gene silencing, GO:0016571 - histone methylation, GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation		PO:0009005 - root , PO:0009049 - inflorescence , PO:0009025 - vascular leaf , PO:0009003 - sporophyte 
20840	P98-B9		SMALL INTERFERING RNA P98-B9	siRNA P98-B9			1		 Other			GR:0101155			GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016246 - RNA interference, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20841	P98-D2		SMALL INTERFERING RNA P98-D2	siRNA P98-D2				P98-D2 has 16 loci on chromosome 1, 2, 3, 4, 5, 6, 8, 10.	 Other			GR:0101156			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20842	P98-G12		SMALL INTERFERING RNA P98-G12	siRNA P98-G12				P98-G12 has 15 loci on chromosome 1, 6, 7, 8, 9, 10, 11, 12.	 Other			GR:0101157			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20843	P98-G5		SMALL INTERFERING RNA P98-G5	siRNA P98-G5				P98-G5 has 8 loci on chromosome 6, 7, 9, 11, 12.	 Other			GR:0101158			GO:0005634 - nucleus, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation		PO:0009049 - inflorescence 
20844	P98-G6		SMALL INTERFERING RNA P98-G6	siRNA P98-G6			11		 Other			GR:0101159			GO:0016246 - RNA interference, GO:0005634 - nucleus, GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016571 - histone methylation		PO:0009049 - inflorescence 
20845	P99-A2		SMALL INTERFERING RNA P99-A2	siRNA P99-A2			1		 Other			GR:0101160			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20846	P99-B3		SMALL INTERFERING RNA P99-B3	siRNA P99-B3				P99-B3 has 3 loci on chromosome 1, 4, 6.	 Other			GR:0101161			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20847	P99-B4		SMALL INTERFERING RNA P99-B4	siRNA P99-B4			1		 Other			GR:0101162			GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0006306 - DNA methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20848	P99-C8		SMALL INTERFERING RNA P99-C8	siRNA P99-C8			3		 Other			GR:0101163			GO:0006306 - DNA methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference, GO:0016571 - histone methylation, GO:0005634 - nucleus		PO:0009049 - inflorescence 
20849	P99-D11		SMALL INTERFERING RNA P99-D11	siRNA P99-D11			11		 Other			GR:0101164			GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm		PO:0009049 - inflorescence 
20850	P99-F3		SMALL INTERFERING RNA P99-F3	siRNA P99-F3			10		 Other			GR:0101165			GO:0005737 - cytoplasm, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0007098 - LP.02 two leaves visible stage , PO:0007106 - LP.03 three leaves visible stage , PO:0007115 - LP.04 four leaves visible stage , PO:0007041 - inflorescence emergence stage , PO:0007094 - LP.01 one leaf visible stage , PO:0009049 - inflorescence 
20851	P99-G11		SMALL INTERFERING RNA P99-G11	siRNA P99-G11			3		 Other			GR:0101166			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20852	P99-H3		SMALL INTERFERING RNA P99-H3	siRNA P99-H3			11		 Other			GR:0101167			GO:0016246 - RNA interference, GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA		PO:0009049 - inflorescence 
20853	P99-H8		SMALL INTERFERING RNA P99-H8	siRNA P99-H8			8		 Other			GR:0101168			GO:0035194 - posttranscriptional gene silencing by RNA, GO:0005737 - cytoplasm, GO:0016246 - RNA interference		PO:0009049 - inflorescence 
20854	P9-F11		SMALL INTERFERING RNA P9-F11	siRNA P9-F11			7		 Other			GR:0101169			GO:0006306 - DNA methylation, GO:0005634 - nucleus, GO:0016571 - histone methylation, GO:0016458 - gene silencing, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20855	P9-G1		SMALL INTERFERING RNA P9-G1	siRNA P9-G1			5		 Other			GR:0101170			GO:0005737 - cytoplasm, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0016246 - RNA interference		PO:0009006 - shoot system 
20856	GC	Gc	_				1	a single dominant gene. The genetic distances on the short arm of rice chromosome 1 between Gc and rm6464, rm6340 and rm462 were 0, 0.588 and 1.18 cM, respectively (Zheng 2008).	 Character as QTL - Yield and productivity,  Coloration - Chlorophyll			GR:0101190				TO:0000295 - chlorophyll-b content, TO:0001015 - photosynthetic rate, TO:0000495 - chlorophyll content, TO:0000396 - grain yield, TO:0000326 - leaf color	
20857	NADH-NR		NADH-NITRATE REDUCTASE	NADH-nitrate reductase	NADH-NITRATE REDUCTASE			a single recessive nuclear gene. a nia-type mutant. Chlorate resistance in M819 was transmitted by a single recessive nuclear gene. The mutant line M819 lacks the functional heme domain of the NADH-NR polypeptide due to a point mutation or a small deletion within the coding region of the structural gene (Hasegawa et al. 1992). 	 Biochemical character,  Tolerance and resistance - Stress tolerance			GR:0060572			GO:0009703 - nitrate reductase (NADH) activity, GO:0010157 - response to chlorate	TO:0000502 - potassium chlorate resistance, TO:0000480 - nutrient sensitivity	
20858	COI		COOL-TEMPERATURE INSENSITIVE	cool-temperature insensitive		coi		This insensitivity to cool temperatures was caused by a single recessive mutation.	 Tolerance and resistance - Stress tolerance			GR:0061079			GO:0005982 - starch metabolic process, GO:0009409 - response to cold	TO:0000196 - amylose content, TO:0000303 - cold tolerance	
20859	_	tms4(t), tms4	_	thermosensitive male sterility4(t), thermosensitive male sterility-4			9	The microsatellite RM257, located earlier on chromosome 9, was linked with the TGMS trait in SA2 at a distance of 6.2 cM. The markers RM257 and TS200 are on either side of this TGMS locus. (Reddy et al. 2000)	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061103			GO:0009266 - response to temperature stimulus	TO:0000067 - genic male sterility-thermo sensitive	
20860	STE1	ste1	_				1	one of the three major loci for low-temperature-sensitive sterility (LTSS) in the 6.1-cM interval between RZ154 and R2635 on chromosome 1.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0061434			GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility, TO:0000436 - spikelet sterility	
20861	STE3	ste3	_				1	one of the three major loci for low-temperature-sensitive sterility (LTSS) in the 6.1-cM interval between RZ566 andRG236 of chromosome 1.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0061436			GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000436 - spikelet sterility, TO:0000180 - spikelet fertility	
20862	STE2	ste2	_				12	one of the three major loci for low-temperature-sensitive sterility (LTSS) in the 3.4-cM interval between C732 and RG98 on chromosome 12.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Tolerance and resistance - Stress tolerance			GR:0061435			GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000436 - spikelet sterility, TO:0000180 - spikelet fertility	
20863	_	TGMS	_	thermosensitive genic male sterility				The TGMS trait in TS6 was controlled by single recessive gene. An RAPD marker, OPC052962, was identified to be associated with TGMS in TS6 (Latha et al. 2004).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance			GR:0061455			GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development	TO:0000053 - pollen sterility, TO:0000067 - genic male sterility-thermo sensitive, TO:0000432 - temperature response trait	
20864	_		_	stem rot resistance gene			2	one of the two loci on chromosome 2 and chromosome 3 that control stem rot resistance in rice. The AFLP marker TAA/GTA167, mapped on rice chromosome 2 between the RFLP markers RZ166 and RG139, was associated with stem rot resistance.	 Tolerance and resistance - Disease resistance			GR:0061490			GO:0050832 - defense response to fungus	TO:0000323 - stem rot disease resistance	
20865	_		_	stem rot resistance gene			3	one of the two loci on chromosome 2 and chromosome 3 that control stem rot resistance in rice. Two microsatellite markers, RM232 and RM251 on chromosome 3 were associated with stem rot resistance.	 Tolerance and resistance - Disease resistance			GR:0061491			GO:0050832 - defense response to fungus	TO:0000323 - stem rot disease resistance	
20866	_	ms	_	male sterile				a single recessive gene controlling male sterility in Cypress 1819. non-PGMS sterile.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061097				TO:0000218 - pollen abortion type, TO:0000199 - genic male sterility	
20867	_	Ms	_	male sterile				a single dominant gene controlling male sterility in Kaybonnet 1789. non-PGMS sterile.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0061096 				TO:0000199 - genic male sterility, TO:0000218 - pollen abortion type	
20868	_	Ms	_	male sterile				a single dominant gene controlling male sterility in Orion 1783. non-PGMS sterile.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060682 				TO:0000199 - genic male sterility, TO:0000218 - pollen abortion type	
20869	_		_	recessive lesion mimic mutant gene of M1009				Recessive gene	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0006952 - defense response	TO:0000356 - brown spot disease resistance, TO:0000063 - mimic response, TO:0000439 - fungal disease resistance, TO:0000074 - blast disease	
20870	GLUP7	Glup7	GLUTELIN PRECURSOR 7	glutelin precursor7, glutelin precursor 7, Glutelin precursor-7	GLUTELIN PRECURSOR 7				 Seed - Physiological traits - Storage substances			GR:0061452			GO:0045735 - nutrient reservoir activity	TO:0000490 - protein composition related trait	PO:0009010 - seed 
20871	LMM1	Lmm1, OsACT1	LESION MIMIC 1	Lesion mimic 1, acyltransferase 1				a dominant gene.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Biochemical character			GR:0061454			GO:0006952 - defense response, GO:0052314 - phytoalexin metabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0002670 - momilactone A content, TO:0000063 - mimic response	
20872	_		_	nallow and rolled leaf gene in KT95				a single recessive gene. TO:0006064: rolled leaf.	 Vegetative organ - Leaf			GR:0061439			GO:0007275 - multicellular organismal development	TO:0000492 - leaf shape, TO:0000655 - leaf development trait, TO:0000370 - leaf width	PO:0009025 - vascular leaf 
20873	_		_	a single recessive gene for chlorate resistance in M1004				NR activity in chlorate resistant mutant M1004 was almost the same as that in Norin 8. The chlorate resitance in M1004 is controlled by a different mechanism from that in M819 and M821. (Hasegawa et al. 1991)	 Tolerance and resistance - Stress tolerance						GO:0010157 - response to chlorate	TO:0000502 - potassium chlorate resistance	
20874	[CMS-MIZ4]	[cms-Miz4]*, [cms-Miz4]	CYTOPLASMIC MALE STERILITY MIZ4	'MIZ4' cytoplasm				PO:0006452; microspore (sensu Poaceae) ; PO:0006318; floret (sensu Poaceae). GRO:0007148; 05-booting stage. Miz.4 is the source of male sterile cytoplasm with fertility restoring genes, as the variety Miz.4 is fertile (Pradhan and Jachuck 2000).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility			GR:0060168			GO:0007275 - multicellular organismal development	TO:0000232 - cytoplasmic male sterility (sensu Oryza)	PO:0020048 - microspore , PO:0009082 - spikelet floret 
20878	_	qWL6	_	a major QTL for watery lesion on chromosome 6			6	Four genes (LOC_Os06g09960, LOC_Os06g09970, LOC_Os06g10000 and  LOC_Os06g10109 =  -, Os06g0200500, Os06g0201000, Os06g0202300) in the 122-kb region of the qWL6 locus were differentially regulated between CJ06 and TN1 in response to the WBPH (whitebacked planthopper) infestation, suggesting they may be candidate resistance genes (Yang et al. 2014).	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect	TO:0000570 - watery lesion percentage, TO:0000205 - white-backed planthopper resistance	
20879	_	lf-3(t), lf-3, lf3	_	late flowering 3			7	A single recessive gene for late heading: lf-3 was mapped between the two RFLP marker C213 and RG404 on chromosome 7 (Li et al. 2001).	 Reproductive organ - Heading date						GO:0009648 - photoperiodism	TO:0000137 - days to heading	PO:0009049 - inflorescence 
20880	_	tms5	_	thermosensitive male sterility5, THERMOSENSITIVE MALE STERILITY 5				The expression of TGMS trait in UPRI 95-140TGMS was controlled by three pairs of independent recessive genes. These three tms genes were non-allelic to tms2 and tms3. The two stronger genes (tms5 and tms6) were locacted on chromosome 7 and 3 (Li and Pandey 2001). 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	GR:0061100					GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus		
20881	_	tms6	_	thermosensitive male sterility6, THERMOSENSITIVE MALE STERILITY 6				The expression of TGMS trait in UPRI 95-140TGMS was controlled by three pairs of independent recessive genes. These three tms genes were non-allelic to tms2 and tms3. The two stronger genes (tms5 and tms6) were locacted on chromosome 7 and 3 (Li and Pandey 2001). 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	GR:0060960					GO:0007275 - multicellular organismal development, GO:0009266 - response to temperature stimulus		
20882	_	tms7	_	thermosensitive male sterility7, THERMOSENSITIVE MALE STERILITY 7				The expression of TGMS trait in UPRI 95-140TGMS was controlled by three pairs of independent recessive genes. These three tms genes were non-allelic to tms2 and tms3. The effect of tms7 was minimum (Li and Pandey 2001). 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	GR:0061101					GO:0009266 - response to temperature stimulus, GO:0007275 - multicellular organismal development		
20883	GLH12	Glh12t, Glh12(t), Glh12	GREEN LEAFHOPPER RESISTANCE 12	Green leafhopper resistance12, Green leafhopper resistance 12, Green leafhopper resistance-12, Green leafhopper resistance-12t				the dominant gene of cultivars Hashikalmi, Ghaiya, ARC10313 and Garia.	 Tolerance and resistance - Insect resistance			GR:0060387			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0000003 - whole plant , PO:0009011 - plant structure 
20884	GLH13	Glh13t, Glh13(t), Glh13	GREEN LEAFHOPPER RESISTANCE 13	Green leafhopper resistance13, Green leafhopper resistance 13, Green leafhopper resistance-13, Green leafhopper resistance-13t				the dominant gene of Asmaita.	 Tolerance and resistance - Insect resistance			GR:0060388			GO:0009625 - response to insect	TO:0000212 - green leafhopper resistance	PO:0009011 - plant structure , PO:0000003 - whole plant 
20885	_		_	a second gene with homology to PTOX			3	Os03g0847500 is predicted to encode a protein of only 154 amino acids and is therefore unlikely to be a functional PTOX.		Os03g0847500	LOC_Os03g63010.1, LOC_Os03g63010.2						
20886	AO2	AO, OsAO2	ALDEHYDE OXIDASE 2	aldehyde oxidase, aldehyde oxidase 2	ALDEHYDE OXIDASE 2		10	one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014). Q7XH05. OsAO2 in Liu et al. 2019.	 Biochemical character	Os10g0138100 	LOC_Os10g04860.1				GO:0004031 - aldehyde oxidase activity, GO:0009851 - auxin biosynthetic process, GO:0009688 - abscisic acid biosynthetic process, GO:0009055 - electron carrier activity, GO:0005829 - cytosol, GO:0005506 - iron ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0004854 - xanthine dehydrogenase activity, GO:0009115 - xanthine catabolic process, GO:0050660 - FAD binding, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors		
20887	_	AO, OsAO, OsAAO, AAO	_	aldehyde oxidase, indole-3-acetaldehyde oxidase			3	one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014). Q852M2.	 Coloration - Others,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0790700	LOC_Os03g57680.1				GO:0009688 - abscisic acid biosynthetic process, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0005829 - cytosol, GO:0050660 - FAD binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0016117 - carotenoid biosynthetic process, GO:0004031 - aldehyde oxidase activity, GO:0005506 - iron ion binding, GO:0009851 - auxin biosynthetic process, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0004854 - xanthine dehydrogenase activity, GO:0009115 - xanthine catabolic process, GO:0009055 - electron carrier activity	TO:0000326 - leaf color	
20888	AO3	AO, OsAO, AAO, OsAAO, OsAO3, OsAAO1, AAO1	ALDEHYDE OXIDASE 3	aldehyde oxidase, abscisic aldehyde oxidase, aldehyde oxidase 3	ALDEHYDE OXIDASE 3	osao3	7	one of the four putative rice aldehyde oxidase (AO) proteins (Abu-Zaitoon 2014). Q6Z351. OsAO3 in Shi et al. 2021. OsAAO1 in Liu  et al. 2023. GO:1900140: regulation of seedling development.	 Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character,  Seed - Physiological traits - Dormancy	Os07g0281700	LOC_Os07g18120.1				GO:0009651 - response to salt stress, GO:0010555 - response to mannitol stimulus, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0005506 - iron ion binding, GO:0004854 - xanthine dehydrogenase activity, GO:0004031 - aldehyde oxidase activity, GO:0009725 - response to hormone stimulus, GO:0009409 - response to cold, GO:0009055 - electron carrier activity, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0010029 - regulation of seed germination, GO:0009737 - response to abscisic acid stimulus, GO:0009688 - abscisic acid biosynthetic process, GO:0050660 - FAD binding, GO:0009851 - auxin biosynthetic process, GO:0009115 - xanthine catabolic process	TO:0000276 - drought tolerance, TO:0000401 - plant growth hormone sensitivity, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000152 - panicle number, TO:0000456 - spikelet number, TO:0000180 - spikelet fertility, TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000396 - grain yield	PO:0025034 - leaf , PO:0009010 - seed , PO:0009005 - root , PO:0025395 - floral organ , PO:0009015 - portion of vascular tissue , PO:0000293 - guard cell 
20889	_	OsNIT1, NIT1, OsNIT2, NIT2, OsNIT4B, NIT4B	_	nitrilase 1, NITRILASE1		osnit2	2	SCC (sulfur-containing compound) biosynthetic gene. OsNIT2 in Song et al. 2019, Abdullah-Zawawi et al. 2022. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0635000 	LOC_Os02g42330.2, LOC_Os02g42330.1				GO:0009629 - response to gravity, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, GO:0044272 - sulfur compound biosynthetic process, GO:0010167 - response to nitrate, GO:0006807 - nitrogen compound metabolic process, GO:0009851 - auxin biosynthetic process, GO:0060359 - response to ammonium ion	TO:0000227 - root length, TO:0001013 - lateral root number, TO:0002693 - gravity response trait, TO:0000011 - nitrogen sensitivity	
20890	_		_				11	A mutated gene in EMT1 (early-maturing TILLING 1) line. LOC_Os11g40890.			LOC_Os11g40890				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
20891	SWEET3B	OsSWEET3b, SWEET3b	SWEET3B	sugar will eventually be exported transporter 3b	SUGAR TRANSPORTER SWEET3B		1	Q5NAZ9.	 Biochemical character	Os01g0220700	LOC_Os01g12130.1				GO:0051119 - sugar transmembrane transporter activity, GO:0009739 - response to gibberellin stimulus, GO:0034219 - carbohydrate transmembrane transport, GO:0010150 - leaf senescence, GO:0009733 - response to auxin stimulus, GO:0005887 - integral to plasma membrane, GO:0008643 - carbohydrate transport, GO:0016021 - integral to membrane, GO:0009735 - response to cytokinin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
20892	_	MtN3/saliva/SWEET gene family paralog	_				1	LOC_Os01g40960.	 Biochemical character		LOC_Os01g40960				GO:0051119 - sugar transmembrane transporter activity, GO:0008643 - carbohydrate transport, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane, GO:0034219 - carbohydrate transmembrane transport	TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
20894	S35		F1 POLLEN STERILITY 35	Hybride male sterility 35		S35-ir, S35-as	1	F1 pollen sterility found in the japonica and indica hybrid. S35 was located between RM6324 and RM8105 on chromosome 1. S35 gene might function as a modifier of S24. S35 causes pollen sterility independently of both EFS and S24 genes, but is dependent on INK.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility			GR:0060833			GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility	PO:0009046 - flower 
20895	EFS		EPISTATIC FACTOR FOR S24			efs-j, EFS-i	2										
20896	INK		INCENTIVE FOR KILLING POLLEN			Ink-i, ink-j	5	S35 causes pollen sterility independently of both the EFS and S24, but is dependent on INK.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility								
20897	GL11	OsGL11, RBPA, OsRBPA, RBP-A, OsRBP-A	GRAIN LENGTH 11	RNA binding protein A, grain length 11	RNA BINDING PROTEIN A	rpb-a, gl11, gl11-93-11-1, gl11-93-11-2, gl11-93-11-3	11	GO:2000034: regulation of seed maturation. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os11g0637700	LOC_Os11g41890.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding, GO:0005737 - cytoplasm, GO:0001558 - regulation of cell growth, GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0008643 - carbohydrate transport, GO:0009664 - plant-type cell wall organization	TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000590 - grain weight, TO:0002759 - grain number, TO:0000397 - grain size	PO:0009049 - inflorescence 
20898	_	RBPI, RBP-I	_	RNA binding protein I			2			Os02g0221500	LOC_Os02g12850.1				GO:0019013 - viral nucleocapsid, GO:0030529 - ribonucleoprotein complex, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
20899	RBPJ	OSRBPJ, RBP-J, OsRBP-J	RNA BINDING PROTEIN J	RNA binding protein J	RNA BINDING PROTEIN J	rbp-j-1, rbp-j-2, rbp-j-3	10	TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os10g0470900	LOC_Os10g33230.1				GO:0003676 - nucleic acid binding, GO:0000166 - nucleotide binding, GO:0009740 - gibberellic acid mediated signaling	TO:0000396 - grain yield, TO:0000590 - grain weight, TO:0000040 - panicle length, TO:0000734 - grain length, TO:0000399 - grain thickness	
20900	_	RBPK, RBP-K	_	RNA binding protein K											GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
20901	_	RBPQ, RBP-Q	_	RNA binding protein Q											GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding		
20903	SUEFCD	Su-Ef-cd(t), Su-Ef-cd	_					an incompletely dominant allelic suppressor for the dominant earliness of an early maturing indica TGMS rice line 6442S-7. This incompletely dominant gene exists in the late maturing varieties, IR68, Xianguo, 9311, and BG1639.	 Reproductive organ - Heading date			GR:0060286			GO:2000028 - regulation of photoperiodism, flowering	TO:0000137 - days to heading	
20904	BB*	Bb*, B(b)	_	Beaded grain arrangement b				complementary genes. PO:0006322; third order inflorescence branch ; PO:0009049; inflorescence. 	 Reproductive organ - Inflorescence			GR:0060067			GO:0007275 - multicellular organismal development	TO:0000142 - secondary branching of inflorescence, TO:0000089 - panicle type	PO:0009049 - inflorescence , PO:0006322 - second order inflorescence branch 
20905	MSRB3	OsMSRB3	METHIONINE SULFOXIDE REDUCTASE B3	Methionine sulfoxide reductase B3	METHIONINE SULFOXIDE REDUCTASE B3		5	Q6AUK5.	 Biochemical character	Os05g0404200	LOC_Os05g33510.1				GO:0005634 - nucleus, GO:0042631 - cellular response to water deprivation, GO:0034599 - cellular response to oxidative stress, GO:0033743 - peptide-methionine (R)-S-oxide reductase activity, GO:0030091 - protein repair, GO:0019375 - galactolipid biosynthetic process, GO:0016036 - cellular response to phosphate starvation, GO:0009631 - cold acclimation, GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0070191 - methionine-R-sulfoxide reductase activity, GO:0046872 - metal ion binding		
20906	MSRB1	OsMSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1	METHIONINE SULFOXIDE REDUCTASE B1	Methionine sulfoxide reductase B1, Methionine sulfoxide reductase B1.1, peptide methionine sulfoxide reductase	METHIONINE SULFOXIDE REDUCTASE B1		6	Q0DC89.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0472000 	LOC_Os06g27760.2, LOC_Os06g27760.1				GO:0030091 - protein repair, GO:0009507 - chloroplast, GO:0006979 - response to oxidative stress, GO:0005739 - mitochondrion, GO:0033743 - peptide-methionine (R)-S-oxide reductase activity, GO:0046872 - metal ion binding, GO:0045454 - cell redox homeostasis, GO:0000302 - response to reactive oxygen species, GO:0009570 - chloroplast stroma	TO:0002657 - oxidative stress	
20907	MSRA4	OsMSRA4, OsMSRA4.1, MSRA4.1	METHIONINE SULFOXIDE REDUCTASE A4	Methionine sulfoxide reductase A4, Methionine sulfoxide reductase A4.1	METHIONINE SULFOXIDE REDUCTASE A4		10	Q336R9.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0563600	LOC_Os10g41400.1, LOC_Os10g41400.2				GO:0030091 - protein repair, GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0009507 - chloroplast	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
20908	MSRA5	OsMSRA5	METHIONINE SULFOXIDE REDUCTASE A5	Methionine sulfoxide reductase A5	METHIONINE SULFOXIDE REDUCTASE A5		6	Q5VPG8.	 Biochemical character	Os06g0138100	LOC_Os06g04650.1				GO:0030091 - protein repair, GO:0006979 - response to oxidative stress, GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity		
20909	MSRA2.1	OsMSRA2.1	METHIONINE SULFOXIDE REDUCTASE A2.1	Methionine sulfoxide reductase A2.1	METHIONINE SULFOXIDE REDUCTASE A2.1		4	Q7XUP7.	 Biochemical character	Os04g0482000	LOC_Os04g40600.1				GO:0030091 - protein repair, GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity, GO:0006979 - response to oxidative stress, GO:0005829 - cytosol		
20910	MSRA2.2	OsMSRA2.2	METHIONINE SULFOXIDE REDUCTASE A2.2	Methionine sulfoxide reductase A2.2	METHIONINE SULFOXIDE REDUCTASE A2.2		4	Q7XUP6.	 Biochemical character	Os04g0482100	LOC_Os04g40620.1				GO:0008113 - peptide-methionine-(S)-S-oxide reductase activity, GO:0006979 - response to oxidative stress, GO:0005829 - cytosol, GO:0030091 - protein repair		
20911	RBP-P	OsRBP-P	RNA-BINDING PROTEIN P	RNA binding protein P	RNA-BINDING PROTEIN P		1	a glutelin zipcode RNA binding protein.  a homologue of A. thaliana UBA2a and UBA2b.	 Seed - Morphological traits,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Physiological traits - Storage substances,  Other,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0265800	LOC_Os01g16090.1				GO:0008380 - RNA splicing, GO:0016071 - mRNA metabolic process, GO:0005737 - cytoplasm, GO:0005768 - endosome, GO:0051028 - mRNA transport, GO:0016197 - endosome transport, GO:0048573 - photoperiodism, flowering, GO:0048316 - seed development, GO:0009845 - seed germination, GO:0006403 - RNA localization, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0010431 - seed maturation	TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000485 - sterility related trait, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000495 - chlorophyll content, TO:0002653 - endosperm storage protein content, TO:0000180 - spikelet fertility, TO:0000397 - grain size, TO:0002661 - seed maturation	PO:0007632 - seed maturation stage 
20912	_	OsDJ-1A, DJ-1A	_	DJ-1/PfpI domain containing protein A, DJ-1 protein A			1	LOC_Os01g11860.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0217500 	LOC_Os01g11860.1				GO:0019249 - lactate biosynthetic process, GO:0005829 - cytosol, GO:0003713 - transcription coactivator activity, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019172 - glyoxalase III activity, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0002238 - response to molecule of fungal origin, GO:0051595 - response to methylglyoxal, GO:0046688 - response to copper ion, GO:0046685 - response to arsenic, GO:0070301 - cellular response to hydrogen peroxide	TO:0000021 - copper sensitivity, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0000080 - micronutrient sensitivity, TO:0000303 - cold tolerance, TO:0000439 - fungal disease resistance	
20913	_	OsDJ-1B, DJ-1B	_	DJ-1/PfpI domain containing protein B, DJ-1 protein B			1	LOC_Os01g11880.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0217800 	LOC_Os01g11880.1				GO:0046688 - response to copper ion, GO:0002238 - response to molecule of fungal origin, GO:0003713 - transcription coactivator activity, GO:0005829 - cytosol, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0019172 - glyoxalase III activity, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019249 - lactate biosynthetic process, GO:0046685 - response to arsenic, GO:0051595 - response to methylglyoxal, GO:0070301 - cellular response to hydrogen peroxide	TO:0000080 - micronutrient sensitivity, TO:0000303 - cold tolerance, TO:0000021 - copper sensitivity, TO:0000439 - fungal disease resistance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	
20914	_	OsDJ-1C, DJ-1C, OsDJ-1C.1, OsDJ-1C.2, OsDJ-1C.3	_	DJ-1/PfpI domain containing protein C, DJ-1 protein C			4	LOC_Os04g57590.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0671700 	LOC_Os04g57590.1, LOC_Os04g57590.2, LOC_Os04g57590.3				GO:0002238 - response to molecule of fungal origin, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0019172 - glyoxalase III activity, GO:0016798 - hydrolase activity, acting on glycosyl bonds, GO:0009408 - response to heat, GO:0051595 - response to methylglyoxal, GO:0046688 - response to copper ion	TO:0000259 - heat tolerance, TO:0000021 - copper sensitivity, TO:0000439 - fungal disease resistance, TO:0000303 - cold tolerance, TO:0000080 - micronutrient sensitivity, TO:0002657 - oxidative stress	
20915	_	OsDJ-1D, DJ-1D, OsDJ-1D.1, OsDJ-1D.2, OsDJ-1D.3, OsDJ-1D.4, OsDJ-1D.5	_	DJ-1/PfpI domain containing protein D, DJ-1 protein D			5	LOC_Os05g44330.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0519600 	LOC_Os05g44330.1, LOC_Os05g44330.2, LOC_Os05g44330.3, LOC_Os05g44330.4, LOC_Os05g44330.5				GO:0006979 - response to oxidative stress, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003713 - transcription coactivator activity, GO:0002238 - response to molecule of fungal origin, GO:0019249 - lactate biosynthetic process, GO:0046685 - response to arsenic, GO:0046688 - response to copper ion, GO:0051595 - response to methylglyoxal, GO:0070301 - cellular response to hydrogen peroxide, GO:0005829 - cytosol, GO:0019172 - glyoxalase III activity, GO:0016798 - hydrolase activity, acting on glycosyl bonds, GO:0009658 - chloroplast organization, GO:0009408 - response to heat, GO:0019243 - methylglyoxal catabolic process to D-lactate	TO:0000439 - fungal disease resistance, TO:0000021 - copper sensitivity, TO:0000080 - micronutrient sensitivity, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	
20916	_	OsDJ-1E, DJ-1E	_	DJ-1/PfpI domain containing protein E, DJ-1 protein E			6	LOC_Os06g34040.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0531200 	LOC_Os06g34040.1				GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019249 - lactate biosynthetic process, GO:0046685 - response to arsenic, GO:0046688 - response to copper ion, GO:0005829 - cytosol, GO:0003713 - transcription coactivator activity, GO:0002238 - response to molecule of fungal origin, GO:0051595 - response to methylglyoxal, GO:0019172 - glyoxalase III activity	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000439 - fungal disease resistance, TO:0000021 - copper sensitivity, TO:0000080 - micronutrient sensitivity, TO:0002657 - oxidative stress	
20917	_	OsDJ-1F, DJ-1F	_	DJ-1/PfpI domain containing protein F, DJ-1 protein F			11	LOC_Os11g37920.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0591550 	LOC_Os11g37920.1				GO:0002238 - response to molecule of fungal origin, GO:0051595 - response to methylglyoxal, GO:0046688 - response to copper ion, GO:0046685 - response to arsenic, GO:0019249 - lactate biosynthetic process, GO:0019243 - methylglyoxal catabolic process to D-lactate, GO:0019172 - glyoxalase III activity, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0005829 - cytosol	TO:0000439 - fungal disease resistance, TO:0002657 - oxidative stress, TO:0000080 - micronutrient sensitivity, TO:0000021 - copper sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
20918	TCL1	OsTCL1	TRICHOMELESS 1	TRICHOMELESS1			1	LOC_Os01g43180. R3 MYB transcription factor. OsTCL1 inhibited trichome formation and promoted root hair formation when expressed in Arabidopsis, however, trichome and root hair formation were largely unaffected in transgenic rice plant overexpressing OsTCL1, indicating that rice may use different mechanisms to regulate trichome and root hair formation (Zheng et al. 2016).	 Other	Os01g0619100	LOC_Os01g43180.1				GO:0003677 - DNA binding		
20919	TCL2	OsTCL2	TRICHOMELESS 2	TRICHOMELESS2			1	LOC_Os01g43230. R3 MYB transcription factor.	 Other	Os01g0619900 	LOC_Os01g43230.1, LOC_Os01g43230.2, LOC_Os01g43230.3						
20920	TTG1B	OsTTG1B	TRANSPARENT TESTA GLABRA 1B	TRANSPARENT TESTA GLABRA1B			2	a homologue of Arabidopsis transcription factor TTG1. an OsTTG1 paralogous gene. highly similar to the ATAN11 gene in A. thaliana.		Os02g0524600 	LOC_Os02g32430.1, LOC_Os02g32430.2				GO:0005634 - nucleus		
20921	GL1B	OsGL1B	GLABRA 1B	GLABRA1B			9	a homologue of Arabidopsis transcription factor GL1.		Os09g0534200	LOC_Os09g36370.1				GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0006621 - protein retention in ER lumen, GO:0046923 - ER retention sequence binding		
20922	HAP2K	OsHAP2K, NF-YA11, OsNF-YA11, NFYA11	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit A11, NUCLEAR FACTOR-Y subunit NF-YA11, NF-YA transcription factor 11, NF-YA subunit 11, NF-YA family 11	HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX		2	GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Other,  Tolerance and resistance - Disease resistance	Os02g0776400 	LOC_Os02g53620.1				GO:0051607 - defense response to virus, GO:0009753 - response to jasmonic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0003700 - transcription factor activity	TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance	
20923	HAP3L	OsHAP3L	HAP3L SUBUNIT OF CCAAT-BOX BINDING COMPLEX		HAP3L SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap3l	9	LOC_Os09g39490.	 Other	Os09g0568200 	LOC_Os09g39490.1				GO:0005634 - nucleus		
20924	HAP5H	OsHAP5H, OsNF-YC9, NF-YC9, NFYC9	HAP5H SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit C9, NUCLEAR FACTOR-Y subunit NF-YC9, NF-YC transcription factor 9, NF-YC subunit 9, NF-YC family 9	HAP5H SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Oshap5h	1	LOC_Os01g01290.	 Other	Os01g0102400	LOC_Os01g01290.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0003677 - DNA binding		PO:0009089 - endosperm 
20925	HAP5J	OsHAP5J, OsNF-YC8, NF-YC8, NFYC8	HAP5J SUBUNIT OF CCAAT-BOX BINDING COMPLEX	NUCLEAR FACTOR-Y subunit C8, NUCLEAR FACTOR-Y subunit NF-YC8, NF-YC transcription factor 8, NF-YC subunit 8, NF-YC family 8	HAP5J SUBUNIT OF CCAAT-BOX BINDING COMPLEX	osnf-yc8	1	LOC_Os01g39850.	 Other	Os01g0580400 	LOC_Os01g39850.1				GO:0046982 - protein heterodimerization activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009089 - endosperm 
20926	HAP5K	OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12	HAP5K SUBUNIT OF CCAAT-BOX BINDING COMPLEX	Nuclear Factor Y subunit C11, NUCLEAR FACTOR-Y subunit C12, NUCLEAR FACTOR-Y subunit NF-YC12, NF-YC transcription factor 12, NF-YC subunit 12, NF-YC family 12	HAP5K SUBUNIT OF CCAAT-BOX BINDING COMPLEX		5	LOC_Os05g23910. OsNF-YC12 in Yang et al. 2017, Li et al. 2018.	 Other	Os05g0304800 	LOC_Os05g23910.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009089 - endosperm , PO:0005360 - aleurone layer 
20927	PGR5	OsPGR5	PROTON GRADIENT REGULATION 5		PROTON GRADIENT REGULATION 5	pgr5	8	GO:0071484: cellular response to light intensity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0566600	LOC_Os08g45190.1				GO:0009644 - response to high light intensity, GO:0009637 - response to blue light, GO:0009534 - chloroplast thylakoid, GO:0009414 - response to water deprivation, GO:0009055 - electron carrier activity, GO:0009642 - response to light intensity, GO:0010109 - regulation of photosynthesis, GO:0045454 - cell redox homeostasis, GO:0010218 - response to far red light, GO:0010155 - regulation of proton transport, GO:0010117 - photoprotection, GO:0010114 - response to red light, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0009744 - response to sucrose stimulus		
20928	_	PGRL1	_	PGR5-LIKE PHOTOSYNTHETIC PHENOTYPE 1					 Biochemical character						GO:0009773 - photosynthetic electron transport in photosystem I		
20929	CRR6	OsCRR6	CHLORORESPIRATORY REDUCTION 6		CHLORORESPIRATORY REDUCTION 6	crr6	8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0167500	LOC_Os08g07060.1				GO:0010109 - regulation of photosynthesis, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0009409 - response to cold, GO:0009535 - chloroplast thylakoid membrane, GO:0009570 - chloroplast stroma, GO:0010275 - NAD(P)H dehydrogenase complex assembly, GO:0016226 - iron-sulfur cluster assembly	TO:0000495 - chlorophyll content, TO:0000543 - leaf nitrogen content, TO:0000303 - cold tolerance	
20930	VALRS3	OsValRS3, ValRS3	VAL-TRNA SYNTHETASE 3	Val-tRNA Synthetase 3	VAL-TRNA SYNTHETASE 3		10	GO:0002161: aminoacyl-tRNA editing activity. LOC_Os10g36210.	 Biochemical character	Os10g0506200 	LOC_Os10g36210.1				GO:0005737 - cytoplasm, GO:0004832 - valine-tRNA ligase activity, GO:0005524 - ATP binding, GO:0006438 - valyl-tRNA aminoacylation		PO:0009066 - anther 
20931	WP1	OsValRS2, ValRS2	WHITE PANICLE 1	Val-tRNA Synthetase 2, WHITE PANICLE1, white panicle 1	VAL-TRNA SYNTHETASE 2	wp1, wp1s, wp1w	7	LOC_Os07g06940.	 Coloration - Chlorophyll,  Biochemical character	Os07g0163500 	LOC_Os07g06940.1				GO:0009507 - chloroplast, GO:0006438 - valyl-tRNA aminoacylation, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0010229 - inflorescence development, GO:0004832 - valine-tRNA ligase activity, GO:0009658 - chloroplast organization, GO:0090069 - regulation of ribosome biogenesis	TO:0000201 - panicle color, TO:0000495 - chlorophyll content, TO:0000621 - inflorescence development trait, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000496 - carotenoid content	PO:0001083 - inflorescence development stage 
20932	OTS1	OsOTS1	OVERLY TOLERANT TO SALT1	Overly Tolerant to Salt 1			6	LOC_Os06g29310. the closest homolog of AtOTS1. SUMO protease protein. GO:2000280: regulation of root development.	 Seed - Physiological traits - Dormancy,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0487900 	LOC_Os06g29310.1, LOC_Os06g29310.2				GO:0048364 - root development, GO:0016926 - protein desumoylation, GO:0016929 - SUMO-specific protease activity, GO:0016049 - cell growth, GO:0010030 - positive regulation of seed germination, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0004175 - endopeptidase activity	TO:0000430 - germination rate, TO:0000615 - abscisic acid sensitivity, TO:0002667 - abscisic acid content, TO:0002686 - cell growth and development trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000495 - chlorophyll content, TO:0000227 - root length, TO:0000656 - root development trait, TO:0006001 - salt tolerance	PO:0006057 - cotyledon abaxial epidermis , PO:0007520 - root development stage 
20933	OTS2	OsOTS2	OVERLY TOLERANT TO SALT2				12	LOC_Os12g41380. the closest homolog of AtOTS2. a SUMO protease protein.		Os12g0606900	LOC_Os12g41380.1						
20934	_	SOD, OsSOD-Cu/Zn, SOD-Cu/Zn, OsaCCS, OsCCS, CCS	_	superoxide dismutase			4	Q7XTY9. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Insect resistance	Os04g0573200 	LOC_Os04g48410.2, LOC_Os04g48410.1				GO:0006801 - superoxide metabolic process, GO:0009408 - response to heat, GO:0016532 - superoxide dismutase copper chaperone activity, GO:0008270 - zinc ion binding, GO:0030001 - metal ion transport, GO:0009409 - response to cold, GO:0009570 - chloroplast stroma, GO:0006878 - cellular copper ion homeostasis, GO:0002213 - defense response to insect, GO:0005737 - cytoplasm, GO:0043085 - positive regulation of catalytic activity, GO:0055114 - oxidation reduction, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000424 - brown planthopper resistance	
20935	_		_	SUMO protease protein			1	LOC_Os01g63040.	 Biochemical character	Os01g0849900 	LOC_Os01g63040.1				GO:0008234 - cysteine-type peptidase activity		
20936	_		_	SUMO protease protein			11	LOC_Os11g01180.	 Biochemical character	Os11g0102700 	LOC_Os11g01180.1				GO:0016929 - SUMO-specific protease activity, GO:0004175 - endopeptidase activity, GO:0016926 - protein desumoylation, GO:0005634 - nucleus		
20937	_		_	SUMO protease protein			12	LOC_Os12g01290.	 Biochemical character	Os12g0103450 	LOC_Os12g01290.1				GO:0017148 - negative regulation of translation, GO:0008234 - cysteine-type peptidase activity, GO:0030598 - rRNA N-glycosylase activity, GO:0006952 - defense response		
20938	_		_	SUMO protease protein			9	LOC_Os09g11850. The ULP1 from S. cerevisiae has strongest homology to Os09g11850, which could imply that this protein may be one of the ancestral forms of SUMO protease (Srivastava et al. 2016).		Os09g0290500 	LOC_Os09g11850.1						
20939	SPF1	OsSPF1, OsSPF1.1, OsSPF1.2	SUMO PROTEASE RELATED TO FERTILITY 1	SUMO protease protein, SUMO PROTEASE RELATED TO FERTILITY1	SUMO PROTEASE RELATED TO FERTILITY 1		5		 Biochemical character	Os05g0207900	LOC_Os05g11770.1				GO:0008234 - cysteine-type peptidase activity		
20940	_		_	SUMO protease protein			11		 Biochemical character	Os11g0214001 	LOC_Os11g10780.1				GO:0008234 - cysteine-type peptidase activity		
20941	ELS1	OsELS1	ESD4-LIKE SUMO PROTEASE 1	SUMO protease protein	ESD4-LIKE SUMO PROTEASE 1	els1	1	an ortholog of AtEsd4.	 Biochemical character,  Reproductive organ - Heading date,  Vegetative organ - Culm	Os01g0355900	LOC_Os01g25370.3, LOC_Os01g25370.2, LOC_Os01g25370.1				GO:0016926 - protein desumoylation, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:0016929 - SUMO-specific protease activity, GO:0004175 - endopeptidase activity	TO:0000166 - gibberellic acid sensitivity, TO:0002616 - flowering time, TO:0000207 - plant height, TO:0000137 - days to heading	
20942	FUG1	OsFUG1	_	SUMO protease protein		fug1	3	TO:0000847: panicle inflorescence morphology trait. 	 Seed - Morphological traits,  Vegetative organ - Culm,  Biochemical character	Os03g0344300 	LOC_Os03g22400.3, LOC_Os03g22400.2, LOC_Os03g22400.1				GO:0016926 - protein desumoylation, GO:0004175 - endopeptidase activity, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus, GO:0016929 - SUMO-specific protease activity	TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000420 - fertility related trait, TO:0000181 - seed weight	
20943	ELS2	OsELS2	ESD4-LIKE SUMO PROTEASE 2	SUMO protease protein	ESD4-LIKE SUMO PROTEASE 2		3		 Biochemical character	Os03g0410100 	LOC_Os03g29630.1				GO:0008234 - cysteine-type peptidase activity		
20944	OTS3	OsOTS3	OVERLY TOLERANT TO SALT 3	SUMO protease protein, Overly Tolerant to Salt3			1		 Biochemical character	Os01g0738100	LOC_Os01g53630.1				GO:0008234 - cysteine-type peptidase activity, GO:0016021 - integral to membrane		
20945	_	OsRBD1, RBD1	_	RNA Binding Domain-Containing Protein 1, RNA binding domain 1-containing protein			12	LOC_Os12g01010.	 Tolerance and resistance - Stress tolerance	Os12g0100100	LOC_Os12g01010.1				GO:0009409 - response to cold, GO:0000166 - nucleotide binding, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0006979 - response to oxidative stress, GO:0009269 - response to desiccation, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0051595 - response to methylglyoxal	TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
20946	SRL2	NRL2, OsSRL2, OsNRL2	SEMI-ROLLED LEAF 2	semi-rolled leaf2, semi-rolled leaf 2, narrow and rolled leaf 2		srl2, nrl2-1, nrl2- 2	3	GO:2000024: regulation of leaf development. GO:2000652: regulation of secondary cell wall biogenesis. TO:0000820: leaf vein anatomy and morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os03g0308200	LOC_Os03g19520.3, LOC_Os03g19520.2, LOC_Os03g19520.1				GO:0009555 - pollen development, GO:0009556 - microsporogenesis, GO:0048366 - leaf development, GO:0009834 - secondary cell wall biogenesis, GO:0006558 - L-phenylalanine metabolic process	TO:0000391 - seed size, TO:0000149 - seed width, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000370 - leaf width, TO:0000655 - leaf development trait, TO:0000085 - leaf rolling, TO:0002641 - acid detergent fiber, TO:0000492 - leaf shape, TO:0000430 - germination rate	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001050 - leaf development stage , PO:0006019 - leaf abaxial epidermis , PO:0009066 - anther , PO:0009005 - root , PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0001007 - pollen development stage , PO:0009071 - anther wall tapetum , PO:0005020 - vascular bundle 
20947	_		_	SRL2-like gene, semi-rolled leaf 2-like gene			2	LOC_Os02g05040.		Os02g0143200 	LOC_Os02g05040.1						
20948	_		_	SRL2-like gene, semi-rolled leaf 2-like gene			1	LOC_Os01g67290.		Os01g0898300 	LOC_Os01g67290.1, LOC_Os01g67290.2						
20949	_		_	SRL2-like gene, semi-rolled leaf 2-like gene			7	LOC_Os07g10550.		Os07g0205900	LOC_Os07g10550.1						
20950	_	RHS10	_	rice RHS10 ortholog			3	LOC_Os03g37120. a rice ortholog of Arabidopsis RHS10 (ROOT HAIR SPECIFIC 10) . Extensin family protein.	 Vegetative organ - Root	Os03g0568800 	LOC_Os03g37120.1				GO:0005524 - ATP binding, GO:0048767 - root hair elongation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0002665 - root hair length	PO:0007519 - 5 root hair formation stage 
20952	HDR1		HEADING DATE REPRESSOR 1	Heading Date Repressor1, Heading Date Repressor 1	HEADING DATE REPRESSOR 1	hdr1	2	LOC_Os02g55080.	 Reproductive organ - Heading date	Os02g0793900	LOC_Os02g55080.1				GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0025395 - floral organ 
20954	_	PH12, PH-12, phasiPH12-1	_	PH12 precursor, PH12 precursor lncRNA, PH12 lncRNA, PH12 long non-coding RNA, phasiPH12-1 phasiRNA, phasiPH12-1 phased small interfering RNA					 Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Other						GO:0005737 - cytoplasm, GO:0009908 - flower development, GO:0010229 - inflorescence development, GO:0016246 - RNA interference, GO:0035194 - posttranscriptional gene silencing by RNA	TO:0000622 - flower development trait, TO:0000621 - inflorescence development trait	PO:0009029 - stamen , PO:0006327 - spikelet meristem , PO:0007615 - flower development stage , PO:0025277 - pollen sac , PO:0001083 - inflorescence development stage , PO:0000230 - inflorescence meristem 
20955	CEP6	OsCEP6, OsCEP3, CEP3	C-TERMINALLY ENCODED PEPTIDE 6	C-terminally encoded peptide 3	C-TERMINALLY ENCODED PEPTIDE 6		1	OsCEP3 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance	Os01g0730400	LOC_Os01g53010.1				GO:0046686 - response to cadmium ion		PO:0005052 - plant callus 
20956	CEP8	OsCEP7, CEP7, OsCEP8, OsCEP1, CEP1	C-TERMINALLY ENCODED PEPTIDE 8	C-terminally encoded peptide 1	C-TERMINALLY ENCODED PEPTIDE 8		1	OsCEP7 and OsCEP8 in Sui et al. 2016. OsCEP7 (Os01g0203400.1) identified from Nipponbare was assumed to be OsCEP8 (EAY72936.1) from 93 to 11 based on sequence similarity and consistent mapping position (Sui et al. 2016). OsCEP1 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance	Os01g0203400	LOC_Os01g10640.1				GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system 
20957	CEP9	OsCEP9, OsCEP11, CEP11	C-TERMINALLY ENCODED PEPTIDE 9	C-terminally encoded peptide 11	C-TERMINALLY ENCODED PEPTIDE 9		5	OsCEP11 in Aggarwal et al. 2020.		Os05g0530033	LOC_Os05g45380.1						
20958	CEP10	OsCEP10, OsCEP12, CEP12	C-TERMINALLY ENCODED PEPTIDE 10	C-terminally encoded peptide 12	C-TERMINALLY ENCODED PEPTIDE 10		6	OsCEP12 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance	Os06g0153000 	LOC_Os06g05960.1				GO:0046686 - response to cadmium ion		PO:0009005 - root 
20959	CEP11	OsCEP11, OsCEP10, CEP10	C-TERMINALLY ENCODED PEPTIDE 11	C-terminally encoded peptide 10	C-TERMINALLY ENCODED PEPTIDE 11		5	OsCEP10 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance	Os05g0206100 	LOC_Os05g11620.1				GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0009005 - root 
20960	CEP12	OsCEP12, OsCEP7, CEP7	C-TERMINALLY ENCODED PEPTIDE 12	C-terminally encoded peptide 7	C-TERMINALLY ENCODED PEPTIDE 12		5	OsCEP7 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance	Os05g0205400  	LOC_Os05g11580.1				GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0005052 - plant callus 
20961	CEP13	OsCEP13, OsCEP8, CEP8	C-TERMINALLY ENCODED PEPTIDE 13	C-terminally encoded peptide 8	C-TERMINALLY ENCODED PEPTIDE 13		5	OsCEP8 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance	Os05g0205800	LOC_Os05g11600.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010038 - response to metal ion	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009006 - shoot system 
20962	CEP14	OsCEP14, OsCEP9, CEP9	C-TERMINALLY ENCODED PEPTIDE 14	C-terminally encoded peptide 9	C-TERMINALLY ENCODED PEPTIDE 14		5	OsCEP9 in Aggarwal et al. 2020.	 Tolerance and resistance - Stress tolerance	Os05g0206000	LOC_Os05g11610.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system 
20963	CEP15	OsCEP15	C-TERMINALLY ENCODED PEPTIDE 15		C-TERMINALLY ENCODED PEPTIDE 15		6			Os06g0637400	LOC_Os06g43080.1						
20964	_	OsSRK, SRK	_	stress-responsive leucine-rich repeat receptor-like kinase, stress-responsive LRR-like kinase			2	LOC_Os02g10100. Q7F8Q9.	 Tolerance and resistance - Stress tolerance	Os02g0194400	LOC_Os02g10100.1				GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity		
20965	_	OsDeg-like 5	_	Deg protease-like 5			3	LOC_Os03g41170.	 Biochemical character	Os03g0608600	LOC_Os03g41170.1				GO:0008233 - peptidase activity		
20966	_	OsMED11_1, MED11_1	_	Mediator 11_1			2	LOC_Os02g09600. GO:0001104: RNA polymerase II transcription cofactor activity.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os02g0189100 	LOC_Os02g09600.1, LOC_Os02g09600.2, LOC_Os02g09600.3				GO:0016592 - mediator complex	TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000382 - 1000-seed weight	
20967	_	OsMED5_3, MED5_3	_	Mediator 5_3			7	LOC_Os07g48350.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0681500	LOC_Os07g48350.1					TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000402 - grain width	
20968	MED14_1 	OsMED14_1	MEDIATOR 14_1 	Mediator 14_1, Mediator subunit 14_1	MEDIATOR 14_1 		8	GO:0001104: RNA polymerase II transcription cofactor activity. TO:0020083: stem diameter. TO:0020109: vascular bundle development trait.	 Character as QTL - Plant growth activity,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Vegetative organ - Root,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Seed - Morphological traits,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0332800 	LOC_Os08g24400.1				GO:0048653 - anther development, GO:0070847 - core mediator complex, GO:0001558 - regulation of cell growth, GO:0001944 - vasculature development, GO:0005737 - cytoplasm, GO:0010229 - inflorescence development, GO:0051301 - cell division, GO:0016592 - mediator complex, GO:0010252 - auxin homeostasis, GO:0048316 - seed development, GO:0009556 - microsporogenesis, GO:0048366 - leaf development, GO:0005634 - nucleus, GO:0042127 - regulation of cell proliferation	TO:0001035 - stem width, TO:0000391 - seed size, TO:0002672 - auxin content, TO:0000145 - internode length, TO:0006032 - panicle size, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000456 - spikelet number, TO:0000421 - pollen fertility, TO:0000146 - seed length, TO:0000455 - seed set percent, TO:0000181 - seed weight, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000050 - inflorescence branching, TO:0001013 - lateral root number, TO:0000257 - root branching, TO:0000558 - small vascular bundle number, TO:0000539 - large vascular bundle number, TO:0000470 - vascular tissue related trait, TO:0000180 - spikelet fertility, TO:0000370 - leaf width, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000621 - inflorescence development trait, TO:0000655 - leaf development trait, TO:0000653 - seed development trait, TO:0000357 - growth and development trait, TO:0000396 - grain yield	PO:0001170 - seed development stage , PO:0001050 - leaf development stage , PO:0001083 - inflorescence development stage , PO:0005029 - root primordium , PO:0020048 - microspore , PO:0009066 - anther , PO:0009071 - anther wall tapetum , PO:0009010 - seed , PO:0009005 - root , PO:0001004 - anther development stage , PO:0009051 - spikelet , PO:0025034 - leaf 
20969	_	OsMED20_1, MED20_1	_	Mediator 20_1			9	LOC_Os09g27140. GO:0001104: RNA polymerase II transcription cofactor activity.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os09g0443500 	LOC_Os09g27140.1, LOC_Os09g27140.2				GO:0016592 - mediator complex, GO:0003713 - transcription coactivator activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter	TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000402 - grain width	
20970	_	OsMED12_2, MED12_2	_	Mediator 12_2			9	GO:0001104: RNA polymerase II transcription cofactor activity.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os10g0550100/Os10g0550066	LOC_Os10g40260.1				GO:0048316 - seed development, GO:0016592 - mediator complex, GO:0003713 - transcription coactivator activity	TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000653 - seed development trait	PO:0001170 - seed development stage 
20971	_	OsMED4_2, MED4_2	_	Mediator 4_2			11	LOC_Os11g05150.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape		LOC_Os11g05150				GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000734 - grain length, TO:0000402 - grain width, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield	PO:0009010 - seed , PO:0001170 - seed development stage 
20972	_	OsMed11_2, Med11_2	_	Mediator 11_2			2	LOC_Os02g49640. 			LOC_Os02g49640						
20973	_	OsMed12_1, Med12_1	_	Mediator 12_1			7	GO:0001104: RNA polymerase II transcription cofactor activity.		Os07g0648266/Os07g0648300	LOC_Os07g45400.1				GO:0016592 - mediator complex		
20974	_	OsMed13_1, Med13_1	_	Mediator 13_1			5	GO:0001104: RNA polymerase II transcription cofactor activity.		Os05g0447500/Os05g0447580/Os05g0447620 	LOC_Os05g37500.1				GO:0016592 - mediator complex		
20975	MED14_2	OsMed14_2, Med14_2	MEDIATOR 14_2	Mediator 14_2, Mediator subunit 14_2	MEDIATOR 14_2		9	GO:0001104: RNA polymerase II transcription cofactor activity.		Os09g0281900 	LOC_Os09g10960.1				GO:0016592 - mediator complex, GO:0070847 - core mediator complex		
20976	SFR6	OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16	SENSITIVE TO FREEZING-6	Mediator 16_1, Mediator complex subunit 16, Mediator subunit 16	MEDIATOR COMPLEX SUBUNIT 16	Osmed16, med16-11, med16-26	10	a functional rice orthologue of Arabidopsis SENSITIVE TO FREEZING-6 (AtSFR6). PO:0030123: panicle inflorescence. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os10g0498700	LOC_Os10g35560.2, LOC_Os10g35560.1				GO:0009753 - response to jasmonic acid stimulus, GO:0050826 - response to freezing, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0070265 - necrotic cell death, GO:0009723 - response to ethylene stimulus, GO:0010942 - positive regulation of cell death, GO:0045926 - negative regulation of growth, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0052322 - positive regulation of phytoalexin biosynthetic process, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0000040 - panicle length, TO:0000249 - leaf senescence, TO:0000095 - osmotic response sensitivity, TO:0000495 - chlorophyll content, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000303 - cold tolerance, TO:0000396 - grain yield, TO:0000449 - grain yield per plant, TO:0000152 - panicle number, TO:0000592 - 1000-dehulled grain weight, TO:0000149 - seed width, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000357 - growth and development trait, TO:0000371 - yield trait	PO:0009005 - root , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0001054 - 4 leaf senescence stage , PO:0020105 - ligule , PO:0025034 - leaf , PO:0009047 - stem 
20977	_	OsMed17_1, Med17_1	_	Mediator 17_1			12	LOC_Os12g44140. GO:0001104: RNA polymerase II transcription cofactor activity		Os12g0638600 	LOC_Os12g44140.1				GO:0016592 - mediator complex		
20978	_	OsMed18_1, Med18_1	_	Mediator 18_1			2	LOC_Os02g57590. 		Os02g0821800 	LOC_Os02g57590.1, LOC_Os02g57590.2				GO:0008033 - tRNA processing, GO:0008168 - methyltransferase activity, GO:0003723 - RNA binding, GO:0006364 - rRNA processing		
20979	_	OsMed22_1, Med22_1	_	Mediator 22_1			1	LOC_Os01g04110. GO:0001104: RNA polymerase II transcription cofactor activity. unnamed protein product in Jang et al. 2018.	 Tolerance and resistance - Stress tolerance	Os01g0132700 	LOC_Os01g04110.1				GO:0016592 - mediator complex	TO:0000031 - silicon sensitivity	
20980	_	OsMed22_2, Med22_2	_	Mediator 22_2			8	LOC_Os08g37480. GO:0001104: RNA polymerase II transcription cofactor activity.		Os08g0480500  	LOC_Os08g37480.1, LOC_Os08g37480.2				GO:0016592 - mediator complex		
20981	_	OsMed23_1, Med23_1	_	Mediator 23_1			2	LOC_Os02g49992.		Os02g0732700 	LOC_Os02g49992.1, LOC_Os02g49992.2, LOC_Os02g49992.3						
20982	_	OsMed26_1, Med26_1	_	Mediator 26_1			10	LOC_Os10g10270.		Os10g0182200 	LOC_Os10g10270.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
20983	_	OsMed26_2, Med26_2	_	Mediator 26_2			11	LOC_Os11g06650.	 Other	Os11g0166800 	LOC_Os11g06650.1				GO:0070449 - elongin complex, GO:0006368 - RNA elongation from RNA polymerase II promoter, GO:0003677 - DNA binding		
20984	_	OsMed26_4, Med26_4	_	Mediator 26_4			10	LOC_Os10g10260.	 Other	Os10g0182100	LOC_Os10g10260.1				GO:0003746 - translation elongation factor activity, GO:0006368 - RNA elongation from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0070449 - elongin complex		
20985	_	OsMed28_1, Med28_1	_	Mediator 28_1			5	LOC_Os05g06290.		Os05g0154900 	LOC_Os05g06290.1				GO:0016592 - mediator complex		
20986	_	OsMed3_1, Med3_1	_	Mediator 3_1			1	LOC_Os01g15850.		Os01g0263500 	LOC_Os01g15850.1						
20987	_	OsMed30_1, Med30_1	_	Mediator 30_1			4	LOC_Os04g31910.		Os04g0388601	LOC_Os04g31910.1						
20988	_	OsMed34_2, Med34_2	_	Mediator 34_2			11	LOC_Os11g48090. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os11g0708600 	LOC_Os11g48090.2, LOC_Os11g48090.3, LOC_Os11g48090.4, LOC_Os11g48090.5				GO:0043140 - ATP-dependent 3'-5' DNA helicase activity, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0005694 - chromosome, GO:0005737 - cytoplasm, GO:0006310 - DNA recombination, GO:0009378 - four-way junction helicase activity, GO:0016021 - integral to membrane, GO:0032508 - DNA duplex unwinding		
20989	_	OsMed35_1, Med35_1	_	Mediator 35_1			10	LOC_Os10g34380.		Os10g0485000 	LOC_Os10g34380.1						
20990	_	OsMed36_1, Med36_1	_	Mediator 36_1			2	LOC_Os02g57590.		Os02g0821800	LOC_Os02g57590.1, LOC_Os02g57590.2				GO:0006364 - rRNA processing, GO:0008033 - tRNA processing, GO:0008168 - methyltransferase activity, GO:0003723 - RNA binding		
20992	SPL40	OsMed5_1, Med5_1	SPOTTED-LEAF 40	Mediator 5_1, spotted-leaf 40		spl40	5	GO:1903427: negative regulation of reactive oxygen species biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process.	 Coloration - Chlorophyll,  Tolerance and resistance - Disease resistance	Os05g0312000	LOC_Os05g24684.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0043069 - negative regulation of programmed cell death, GO:0006952 - defense response, GO:0009416 - response to light stimulus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000295 - chlorophyll-b content, TO:0000522 - stomatal conductance, TO:0001027 - net photosynthetic rate, TO:0000316 - photosynthetic ability, TO:0000172 - jasmonic acid sensitivity, TO:0000298 - chlorophyll ratio, TO:0000074 - blast disease, TO:0000063 - mimic response, TO:0000112 - disease resistance, TO:0000075 - light sensitivity, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0001018 - transpiration rate	
20993	_	OsMed5_2, Med5_2	_	Mediator 5_2			7			Os07g0211101/Os07g0211200 	LOC_Os07g11000.1						
20994	_	OsMed8_1, Med8_1	_	Mediator 8_1			3	LOC_Os03g31010.		Os03g0423800	LOC_Os03g31010.1						
20995	_	OsMed9_2, Med9_2	_	Mediator 9_2			3	LOC_Os03g15560.		Os03g0262100 	LOC_Os03g15560.1						
20996	APIP10	OsAPIP10, OsRING239, RING239	AVRPIZ-T INTERACTING PROTEIN 10	AvrPiz-t Interacting Protein 10, RING-type E3 ubiquitin ligase 239	AVRPIZ-T INTERACTING PROTEIN 10		2	E3 Ligase. a positive regulator of PAMP-triggered immunity (PTI). RING Finger Protein (OsRFP). GO:0140590: effector-mediated suppression of host defenses. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0182900 	LOC_Os02g09060.2, LOC_Os02g09060.1				GO:0016567 - protein ubiquitination, GO:0000151 - ubiquitin ligase complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus, GO:0043130 - ubiquitin binding	TO:0000074 - blast disease	
20997	_	OsLSR, LSR	_	Low seed setting related			10	NB-LRR-like gene. 	 Tolerance and resistance - Disease resistance	Os10g0183000	LOC_Os10g10360.1, LOC_Os10g10360.2, LOC_Os10g10360.3, LOC_Os10g10360.4				GO:0043531 - ADP binding, GO:0009626 - plant-type hypersensitive response, GO:0009507 - chloroplast, GO:0008219 - cell death, GO:0050776 - regulation of immune response, GO:0070623 - regulation of thiamin biosynthetic process	TO:0000112 - disease resistance	
20998	_	OsTHIC, THIC	_	HMP-P synthase			3	homologous to the Arabidopsis AtTHIC.	 Biochemical character	Os03g0679700	LOC_Os03g47610.1, LOC_Os03g47610.2, LOC_Os03g47610.3, LOC_Os03g47610.4, LOC_Os03g47610.5, LOC_Os03g47610.6, LOC_Os03g47610.8				GO:0009228 - thiamin biosynthetic process, GO:0051536 - iron-sulfur cluster binding		
20999	_		CUPINCIN	Cupincin			6	LOC_Os06g43830. B8AL97. cupin domain containing protease.			LOC_Os06g43830				GO:0045735 - nutrient reservoir activity		
21000	_	TRP1, OsTRP1	_	Rice binding protein, C-terminal binding protein			3	Rice binding protein with 2-Hacid_dh_C conservative domain structure. a transcriptional repressor.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0126000	LOC_Os03g03450.1, LOC_Os03g03450.2				GO:0004048 - anthranilate phosphoribosyltransferase activity, GO:0003824 - catalytic activity, GO:0000162 - tryptophan biosynthetic process, GO:0005829 - cytosol, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0006952 - defense response, GO:0051607 - defense response to virus	TO:0000112 - disease resistance, TO:0000148 - viral disease resistance, TO:0000031 - silicon sensitivity	
21001	CYP704A3	OsCYP704A3	P-450 704A3	Cytochrome P450 704A3	CYTOCHROME P450 51H2		4	LOC_Os04g48460.	 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Biochemical character	Os04g0573900	LOC_Os04g48460.1, LOC_Os04g48460.2				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010229 - inflorescence development, GO:0020037 - heme binding, GO:0005506 - iron ion binding	TO:0000391 - seed size, TO:0000734 - grain length, TO:0000146 - seed length, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21002	MIRF10422-AKR	osa-miRf10422-akr, miRf10422-akr	MICRORNA F10422-AKR	MICRORNA f10422-akr	_		3	target gene: CYP704A3 (Os04g0573900). miRBASE accession: -.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA		
21003	MIR2923A	osa-MIR2923a, MIR2923a	MICRORNA 2923A	MICRORNA 2923a	_		4	miRBase ID: -. Target genes: carbonic anhydrase (Os11g0153200), transposon Rim2 M53 (BK000333), Polyphenol oxidase (Os04g0624500).	 Seed - Morphological traits - Grain shape,  Other						GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0016442 - RNA-induced silencing complex, GO:0006379 - mRNA cleavage	TO:0002731 - grain length to width ratio, TO:0000734 - grain length	
21004	ALPHACA10	OsalphaCA10, alphaCA10	ALPHA-CARBONIC ANHYDRASE 10	carbonic anhydrase, alpha-carbonic anhydrase 10	ALPHA-CARBONIC ANHYDRASE 10		11	LOC_Os11g05520.	 Biochemical character	Os11g0153200	LOC_Os11g05510.1, LOC_Os11g05520.1						
21005	ARFA1C	OsARFA1c, ARFA1c	ADP-RIBOSYLATION FACTOR A1C	ADP-ribosylation factor A1c	ADP-RIBOSYLATION FACTOR A1C		7	LOC_Os07g12170.	 Tolerance and resistance - Stress tolerance	Os07g0223100 	LOC_Os07g12170.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0015031 - protein transport, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0009409 - response to cold, GO:0007264 - small GTPase mediated signal transduction	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
21006	ARFA1E	OsARFA1e, ARFA1e	ADP-RIBOSYLATION FACTOR A1E	ADP-ribosylation factor A1e	ADP-RIBOSYLATION FACTOR A1E		1	LOC_Os01g16030.		Os01g0265100	LOC_Os01g16030.1, LOC_Os01g16030.2, LOC_Os01g16030.3, LOC_Os01g16030.4				GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport		
21007	ARFB1A	OsARFB1a, ARFB1a	ADP-RIBOSYLATION FACTOR B1A	ADP-ribosylation factor B1a	ADP-RIBOSYLATION FACTOR B1A		6	LOC_Os06g02390.	 Tolerance and resistance - Stress tolerance	Os06g0114200	LOC_Os06g02390.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0015031 - protein transport, GO:0009414 - response to water deprivation, GO:0005525 - GTP binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
21008	ARFB1B	OsARFB1b, ARFB1b	ADP-RIBOSYLATION FACTOR B1B	ADP-ribosylation factor B1b	ADP-RIBOSYLATION FACTOR B1B		2	LOC_Os02g03610.	 Tolerance and resistance - Stress tolerance	Os02g0128600 	LOC_Os02g03610.1				GO:0007264 - small GTPase mediated signal transduction, GO:0009414 - response to water deprivation, GO:0005525 - GTP binding, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005622 - intracellular	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
21009	ARFB1C	OsARFB1c, ARFB1c	ADP-RIBOSYLATION FACTOR B1C	ADP-ribosylation factor B1c	ADP-RIBOSYLATION FACTOR B1C		10	LOC_Os10g42940.		Os10g0580200	LOC_Os10g42940.1, LOC_Os10g42940.3, LOC_Os10g42940.4				GO:0007264 - small GTPase mediated signal transduction, GO:0005622 - intracellular, GO:0005525 - GTP binding		
21010	ARFB1D	OsARFB1d, ARFB1d	ADP-RIBOSYLATION FACTOR B1D	ADP-ribosylation factor B1d	ADP-RIBOSYLATION FACTOR B1D		2	LOC_Os02g47110.2		Os02g0699300	LOC_Os02g47110.1, LOC_Os02g47110.2, LOC_Os02g47110.3				GO:0005622 - intracellular, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction		
21011	ARF3	OsARF3, ARF3	ADP-RIBOSYLATION FACTOR 3	ADP-ribosylation factor 3	ADP-RIBOSYLATION FACTOR 3		8	LOC_Os08g15040.		Os08g0248900	LOC_Os08g15040.1, LOC_Os08g15040.2				GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		
21012	ARFC1	OsARFC1, ARFC1	ADP-RIBOSYLATION FACTOR C1	ADP-ribosylation factor C1	ADP-RIBOSYLATION FACTOR C1		11	LOC_Os11g37640.		Os11g0586900 	LOC_Os11g37640.1				GO:0015031 - protein transport, GO:0005622 - intracellular, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction		PO:0009066 - anther 
21013	GB1A	OsGB1a, GB1a	GTP-BINDING PROTEIN 1A	GTP-binding protein 1a	GTP-BINDING PROTEIN 1A		3	LOC_Os03g27450.		Os03g0392300	LOC_Os03g27450.1, LOC_Os03g27450.2				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0015031 - protein transport		PO:0009006 - shoot system 
21014	GB1B	OsGB1b, GB1b	GTP-BINDING PROTEIN 1B	GTP-binding protein 1b	GTP-BINDING PROTEIN 1B		7	LOC_Os07g42820.	 Tolerance and resistance - Stress tolerance	Os07g0620400 	LOC_Os07g42820.1				GO:0009737 - response to abscisic acid stimulus, GO:0015031 - protein transport, GO:0007264 - small GTPase mediated signal transduction, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005622 - intracellular, GO:0005525 - GTP binding	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
21015	TTN5	OsTTN5, TTN5	TITIN 5	Titin 5	TITIN 5		2	LOC_Os02g22140.		Os02g0327100 	LOC_Os02g22140.1				GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding		
21016	_	OsARL1a, ARL1a	_	ARF-like protein 1a	_		3	LOC_Os03g10370.	 Tolerance and resistance - Stress tolerance	Os03g0200800 	LOC_Os03g10370.1				GO:0016020 - membrane, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0007264 - small GTPase mediated signal transduction, GO:0009269 - response to desiccation, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0015031 - protein transport	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009066 - anther 
21017	_	OsARL1b, ARL1b	_	ARF-like protein 1b	_		2	LOC_Os02g49980.		Os02g0732500 	LOC_Os02g49980.1, LOC_Os02g49980.2				GO:0005525 - GTP binding, GO:0015031 - protein transport, GO:0016020 - membrane, GO:0007264 - small GTPase mediated signal transduction, GO:0005622 - intracellular		
21018	SAR1C	OsARL1d, ARL1d, OsSar1c, Sar1c	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1C	"ARF-like protein 1d, \"secretion-associated, Ras-related protein1c\""	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1C		1	LOC_Os01g15010.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits,  Seed - Physiological traits - Dormancy	Os01g0254000	LOC_Os01g15010.1				GO:0016192 - vesicle-mediated transport, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0048623 - seed germination on parent plant, GO:0005525 - GTP binding, GO:0007264 - small GTPase mediated signal transduction, GO:0006886 - intracellular protein transport	TO:0000100 - shrunken endosperm, TO:0000202 - germination ratio, TO:0000490 - protein composition related trait, TO:0002653 - endosperm storage protein content, TO:0000104 - floury endosperm, TO:0000390 - grain core percent white	
21019	SAR1A	OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1A	"ARF-like protein 1e, \"secretion-associated, Ras-related protein1a\""	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1A		1	LOC_Os01g23620. a basic COPII coat machinery component.	 Seed - Physiological traits - Storage substances,  Seed - Physiological traits - Dormancy,  Seed - Morphological traits	Os01g0338000 	LOC_Os01g23620.1				GO:0007264 - small GTPase mediated signal transduction, GO:0005525 - GTP binding, GO:0016192 - vesicle-mediated transport, GO:0048623 - seed germination on parent plant, GO:0006886 - intracellular protein transport, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum	TO:0000104 - floury endosperm, TO:0000390 - grain core percent white, TO:0000202 - germination ratio, TO:0000490 - protein composition related trait, TO:0002653 - endosperm storage protein content, TO:0000100 - shrunken endosperm	
21020	SAR1B	OsARL1f, ARL1f, OsSar1b, Sar1b	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1B	"ARF-like protein 1f, \"secretion-associated, Ras-related protein1b\""	SECRETION-ASSOCIATED, RAS-RELATED PROTEIN 1B		12	LOC_Os12g37360.	 Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy,  Seed - Physiological traits - Storage substances	Os12g0560300 	LOC_Os12g37360.1				GO:0007264 - small GTPase mediated signal transduction, GO:0006886 - intracellular protein transport, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0005525 - GTP binding, GO:0009651 - response to salt stress, GO:0016192 - vesicle-mediated transport, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0048623 - seed germination on parent plant, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000490 - protein composition related trait, TO:0002653 - endosperm storage protein content, TO:0000104 - floury endosperm, TO:0000100 - shrunken endosperm, TO:0000390 - grain core percent white, TO:0000202 - germination ratio, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
21021	EIF3F	eIF-3f, OseIF3f	EUKARYOTIC INITIATION FACTOR 3F	"\"eukaryotic translation initiation factor 3, subunit f\", Eukaryotic translation initiation factor 3 subunit f"	EUKARYOTIC INITIATION FACTOR 3F		5	LOC_Os05g01450. GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0104800 	LOC_Os05g01450.1, LOC_Os05g01450.2				GO:0031369 - translation initiation factor binding, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0005829 - cytosol, GO:0006413 - translational initiation, GO:0003743 - translation initiation factor activity, GO:0001731 - formation of translation preinitiation complex, GO:0000502 - proteasome complex, GO:0009555 - pollen development, GO:0006446 - regulation of translational initiation, GO:0005783 - endoplasmic reticulum, GO:0055046 - microgametogenesis	TO:0000180 - spikelet fertility, TO:0000218 - pollen abortion type, TO:0000396 - grain yield, TO:0000421 - pollen fertility	PO:0001007 - pollen development stage , PO:0009049 - inflorescence , PO:0009066 - anther 
21022	EIF3A	eIF-3a, OseIF3a	EUKARYOTIC INITIATION FACTOR 3A	"\"eukaryotic translation initiation factor 3, subunit a\""	EUKARYOTIC INITIATION FACTOR 3A		1	LOC_Os01g03070.	 Other	Os01g0120800 	LOC_Os01g03070.1, LOC_Os01g03070.2				GO:0003743 - translation initiation factor activity, GO:0016021 - integral to membrane		
21023	EIF3B	eIF-3b, OseIF3b	EUKARYOTIC INITIATION FACTOR 3B	"\"eukaryotic translation initiation factor 3, subunit b\", Eukaryotic translation initiation factor 3 subunit b"	EUKARYOTIC INITIATION FACTOR 3B		10	LOC_Os10g41960.	 Other	Os10g0569200	LOC_Os10g41960.1				GO:0003743 - translation initiation factor activity, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0000166 - nucleotide binding, GO:0001731 - formation of translation preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0016021 - integral to membrane		
21024	_	eIF-3c, OseIF3c, EIF3C	_	"\"eukaryotic translation initiation factor 3, subunit c\", EUKARYOTIC INITIATION FACTOR 3C"			7	LOC_Os07g03230.	 Other	Os07g0124500 	LOC_Os07g03230.1, LOC_Os07g03230.2				GO:0016282 - eukaryotic 43S preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006413 - translational initiation, GO:0006446 - regulation of translational initiation, GO:0016021 - integral to membrane, GO:0031369 - translation initiation factor binding, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0001731 - formation of translation preinitiation complex		
21025	_	eIF-3c, OseIF3c, EIF3C	_	"\"eukaryotic translation initiation factor 3, subunit c\", EUKARYOTIC INITIATION FACTOR 3C"			2	LOC_Os02g03080 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Other						GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0006446 - regulation of translational initiation, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0003743 - translation initiation factor activity, GO:0001731 - formation of translation preinitiation complex		
21026	EIF3D	eIF-3d, OseIF3d	EUKARYOTIC INITIATION FACTOR 3D	"\"eukaryotic translation initiation factor 3, subunit d\", Eukaryotic translation initiation factor 3 subunit d"	EUKARYOTIC INITIATION FACTOR 3D		5	LOC_Os05g49150.	 Other	Os05g0566500	LOC_Os05g49150.1				GO:0003743 - translation initiation factor activity, GO:0001731 - formation of translation preinitiation complex, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex		
21027	EIF3E	eIF-3e, OseIF3e	EUKARYOTIC INITIATION FACTOR 3E	"\"eukaryotic translation initiation factor 3, subunit e\""	EUKARYOTIC INITIATION FACTOR 3E		7	LOC_Os07g07250.	 Other	Os07g0167000 	LOC_Os07g07250.1				GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0005634 - nucleus, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0016282 - eukaryotic 43S preinitiation complex		
21028	EIF3G	eIF-3g, OseIF3g, RBP-43	EUKARYOTIC INITIATION FACTOR 3G	"\"eukaryotic translation initiation factor 3, subunit g\", RNA-binding RBP-43"	EUKARYOTIC INITIATION FACTOR 3G		2	LOC_Os02g54700.	 Other	Os02g0788400 	LOC_Os02g54700.2				GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0000166 - nucleotide binding, GO:0001731 - formation of translation preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex		
21029	EIF3K	eIF-3k, OseIF3k	EUKARYOTIC INITIATION FACTOR 3K	"\"eukaryotic translation initiation factor 3, subunit k\", Eukaryotic translation initiation factor 3 subunit k"	EUKARYOTIC INITIATION FACTOR 3K		3	LOC_Os03g08450. Q94HF1	 Other	Os03g0182700	LOC_Os03g08450.1				GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0043022 - ribosome binding, GO:0003743 - translation initiation factor activity, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex		
21030	EIF3L	eIF-3l, OseIF3l	EUKARYOTIC INITIATION FACTOR 3L	"\"eukaryotic translation initiation factor 3, subunit l\""	EUKARYOTIC INITIATION FACTOR 3L		5	LOC_Os05g13950.	 Other	Os05g0227700 	LOC_Os05g13950.1, LOC_Os05g13950.2				GO:0001731 - formation of translation preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex, GO:0033290 - eukaryotic 48S preinitiation complex		
21031	EIF3M	eIF-3m, OseIF3m	EUKARYOTIC INITIATION FACTOR 3M	"\"eukaryotic translation initiation factor 3, subunit m\""	EUKARYOTIC INITIATION FACTOR 3M		4	LOC_Os04g01290. GO:0002183: cytoplasmic translational initiation.	 Other	Os04g0103200 	LOC_Os04g01290.1, LOC_Os04g01290.2, LOC_Os04g01290.3				GO:0033290 - eukaryotic 48S preinitiation complex, GO:0001731 - formation of translation preinitiation complex, GO:0003743 - translation initiation factor activity, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0006446 - regulation of translational initiation, GO:0016282 - eukaryotic 43S preinitiation complex		
21032	GATB	OsGatB, GatB	GLUTAMYL-TRNA(GLN)  AMIDOTRANSFERASE B SUBUNIT	glutamyl-tRNA(Gln) amidotransferase B subunit family protein, glutamyl-tRNA(Gln) amidotransferase B subunit, aspartyl/glutamyl-tRNA amidotransferase subunit B	GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE B SUBUNIT	Osgatb	11	Q2R2Z0. an ortholog of Arabidopsis GatB and yeast PET112.	 Vegetative organ - Root	Os11g0544800	LOC_Os11g34210.1, LOC_Os11g34210.2				GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation, GO:0080022 - primary root development, GO:0009826 - unidimensional cell growth, GO:0009507 - chloroplast, GO:0006754 - ATP biosynthetic process, GO:0006412 - translation, GO:0051301 - cell division, GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, GO:0005739 - mitochondrion, GO:0005524 - ATP binding	TO:0002692 - root meristem development, TO:0000656 - root development trait, TO:0000227 - root length, TO:0002687 - cell elongation trait	PO:0007520 - root development stage , PO:0000025 - root tip , PO:0007527 - 2 root meristem formation stage 
21033	HDA705	OsHDA705	HISTONE DEACETYLASE 705	histone deacetylase 705	HISTONE DEACETYLASE 705	hda705	8	RPD/HDA1 family.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Other	Os08g0344100	LOC_Os08g25570.1				GO:0009845 - seed germination, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific), GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009617 - response to bacterium, GO:0042742 - defense response to bacterium, GO:0009738 - abscisic acid mediated signaling, GO:0009733 - response to auxin stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000102 - phosphorus sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009049 - inflorescence , PO:0007057 - 0 seed germination stage , PO:0009030 - carpel 
21034	_	RFC3	_	RFC subunit 3, restoration of fertility complex subunit 3			5	a DUF1620-containing and WD40-like repeat protein. GO: 0072546: ER membrane protein complex.	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration	Os05g0230600	LOC_Os05g14170.1				GO:0016020 - membrane, GO:0005739 - mitochondrion, GO:0034975 - protein folding in endoplasmic reticulum	TO:0000308 - male fertility restoration trait	
21035	_	OsAIR1, AIR1, OsRING172, RING172	_	arsenic-induced RING E3 ligase 1, ARSENIC-INDUCED RING E3 LIGASE 1, As-Induced RING E3 ligase 1, RING-type E3 ubiquitin ligase 172			5	LOC_Os05g41795. TO:0006054: arsenic concentration.	 Other,  Tolerance and resistance - Stress tolerance	Os05g0497600	LOC_Os05g41795.1				GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0008270 - zinc ion binding, GO:0006412 - translation, GO:0005773 - vacuole	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
21036	_	OsRFP, OsRING384, RING384	_	RING finger protein, RING-type E3 ubiquitin ligase 384			8	LOC_Os08g31930. 	 Other,  Tolerance and resistance - Stress tolerance	Os08g0414200	LOC_Os08g31930.1				GO:0046685 - response to arsenic, GO:0008270 - zinc ion binding		
21037	HIRP1	OsRFP, OsHIRP1, DLN82, OsDLN82, OsPHD14, PHD14, OsRING365, RING365	HEAT-INDUCED RING FINGER PROTEIN 1	RING finger protein, heat-induced RING finger protein 1, DLN repressor 82, DLN motif protein 82, Plant homeo-domain finger protein 14, PHD finger protein 14, RING-type E3 ubiquitin ligase 365	HEAT-INDUCED RING FINGER PROTEIN 1		3	BGIOSGA012447. A2XFQ9.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0302200	LOC_Os03g19020.3, LOC_Os03g19020.2, LOC_Os03g19020.1				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0046685 - response to arsenic	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	
21038	_	OsRFP, OsRING128, RING128	_	RING finger protein, RING-type E3 ubiquitin ligase 128			3	LOC_Os03g59540. 	 Tolerance and resistance - Stress tolerance,  Other	Os03g0809800	LOC_Os03g59540.1				GO:0046685 - response to arsenic		
21039	_	OsRFP, OsRING152, RING152	_	RING finger protein, RING-type E3 ubiquitin ligase 152			7	LOC_Os07g41800. 	 Tolerance and resistance - Stress tolerance,  Other	Os07g0608800	LOC_Os07g41800.1, LOC_Os07g41800.2, LOC_Os07g41800.3				GO:0016558 - protein import into peroxisome matrix, GO:0005779 - integral to peroxisomal membrane, GO:0005778 - peroxisomal membrane, GO:0046685 - response to arsenic, GO:0008270 - zinc ion binding		
21040	LLB	OsLLB, LCMT, OsMTS1, MTS1, PLS3	LESION AND LAMINA BENDING 	leucine carboxyl methyltransferase, Premature leaf senescence 3, O-methyltransferase 1	LEUCINE CARBOXYL METHYLTRANSFERASE	llb, pls3	7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Biochemical character,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os07g0247100 	LOC_Os07g14350.1, LOC_Os07g14350.2				GO:0042542 - response to hydrogen peroxide, GO:0008219 - cell death, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0032259 - methylation, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009742 - brassinosteroid mediated signaling, GO:0030187 - melatonin biosynthetic process, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0048573 - photoperiodism, flowering, GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity	TO:0002668 - jasmonic acid content, TO:0000074 - blast disease, TO:0002671 - momilactone B content, TO:0000175 - bacterial blight disease resistance, TO:0002670 - momilactone A content, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000605 - hydrogen peroxide content, TO:0001015 - photosynthetic rate, TO:0000293 - chlorophyll-a content, TO:0000137 - days to heading, TO:0000063 - mimic response, TO:0002616 - flowering time, TO:0000396 - grain yield, TO:0002688 - leaf lamina joint bending	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
21041	VAMP714	OsVAMP714	VESICLE-ASSOCIATED MEMBRANE PROTEIN 714	vesicle-associated membrane protein 714	VESICLE-ASSOCIATED MEMBRANE PROTEIN 714		10	membrane-trafficking protein.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os10g0154000 	LOC_Os10g06540.2, LOC_Os10g06540.1				GO:0009507 - chloroplast, GO:0050832 - defense response to fungus, GO:0006906 - vesicle fusion, GO:0006887 - exocytosis, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding, GO:0009751 - response to salicylic acid stimulus, GO:0016021 - integral to membrane, GO:0031201 - SNARE complex, GO:0005774 - vacuolar membrane	TO:0000401 - plant growth hormone sensitivity, TO:0000074 - blast disease, TO:0000207 - plant height, TO:0002689 - leaf sheath length	
21042	VAMP7111	OsVAMP7111	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111	vesicle-associated membrane protein 7111	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111		6			Os06g0174400 	LOC_Os06g07780.2, LOC_Os06g07780.1				GO:0031201 - SNARE complex, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0006887 - exocytosis, GO:0006906 - vesicle fusion, GO:0016021 - integral to membrane		
21043	VAMP71112	OsVAMP7112	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7112	vesicle-associated membrane protein 7112	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7112		2			Os02g0803600 	LOC_Os02g55990.1				GO:0006906 - vesicle fusion, GO:0031201 - SNARE complex, GO:0016021 - integral to membrane, GO:0006887 - exocytosis, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding		PO:0009066 - anther 
21044	PI65	Pi65(t), Pi65	PYRICULARIA ORYZAE RESISTANCE 65	Magnaporthe grisea resistance-65, Blast resistance 65			11	A single dominant gene Pi65(t) was located on chromosome 11 from 30.42 Mb to 30.85 Mb. Based on the Nipponbare reference database in build 5, 20 predicted genes (Os11g0691700-Os11g0700100) were located within the interval of 0.43 Mb. 	 Tolerance and resistance - Disease resistance	Os11g0694600	LOC_Os11g47180.1				GO:0009620 - response to fungus	TO:0000074 - blast disease	
21045	_	OsCLT1, CLT1	_	CRT-like transporter 1		Osclt1	1	LOC_Os01g72570. GO:0071722: detoxification of arsenic-containing substance. GO:0071585: detoxification of cadmium ion. TO:0006054: arsenic concentration.	 Tolerance and resistance - Stress tolerance	Os01g0955700 	LOC_Os01g72570.1, LOC_Os01g72570.2, LOC_Os01g72570.3				GO:0016021 - integral to membrane, GO:0009636 - response to toxin, GO:0046938 - phytochelatin biosynthetic process, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0042170 - plastid membrane, GO:0034635 - glutathione transport	TO:0000207 - plant height, TO:0000227 - root length	
21046	_	OsCLT2, CLT2	_	CRT-like transporter 2			12			Os12g0511300 	LOC_Os12g32650.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
21047	_	TIC62, Os-TIC26, OsTIC26	_			Os-tic62	10	LOC_Os10g01044.		Os10g0100300	LOC_Os10g01044.1, LOC_Os10g01044.2, LOC_Os10g01044.3				GO:0009535 - chloroplast thylakoid membrane		
21048	NPC1	OsNPC1	NON-SPECIFIC PHOSPHOLIPASE C1 	Non-specific phospholipase C1	NON-SPECIFIC PHOSPHOLIPASE C1 		3	GO:0071668: plant-type cell wall assembly. XB21 interacting protein (XB21IP).	 Biochemical character,  Seed - Physiological traits - Shattering,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os03g0826600	LOC_Os03g61130.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0005737 - cytoplasm, GO:0006651 - diacylglycerol biosynthetic process, GO:0009414 - response to water deprivation	TO:0000473 - grain shattering, TO:0000061 - node shattering, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002641 - acid detergent fiber	
21049	NPC2	OsNPC2	NON-SPECIFIC PHOSPHOLIPASE C2	Non-specific phospholipase C2	NON-SPECIFIC PHOSPHOLIPASE C2		1	LOC_Os01g72520.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0955000	LOC_Os01g72520.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0010229 - inflorescence development, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0048316 - seed development	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage , PO:0009005 - root 
21050	NPC4	OsNPC3, OsNPC4, NPC3	NON-SPECIFIC PHOSPHOLIPASE C4	Non-specific phospholipase C4	NON-SPECIFIC PHOSPHOLIPASE C4		3	LOC_Os03g63580. OsNPC3 in Cao et al. 2016.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0852800	LOC_Os03g63580.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0001170 - seed development stage 
21051	NPC3	OsNPC4, OsNPC3, NPC4	NON-SPECIFIC PHOSPHOLIPASE C3	Non-specific phospholipase C3	NON-SPECIFIC PHOSPHOLIPASE C3		11	OsNPC4 in Cao et al. 2016, Sun et al. 2022.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os11g0593000	LOC_Os11g38050.1				GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000656 - root development trait	PO:0007520 - root development stage , PO:0009005 - root 
21052	NPC5	OsNPC6, OsNPC5, NPC6	NON-SPECIFIC PHOSPHOLIPASE C5	Non-specific phospholipase C5	NON-SPECIFIC PHOSPHOLIPASE C5		1	LOC_Os01g01190. OsNPC6 in Cao et al. 2016.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0102000	LOC_Os01g01190.1				GO:0009414 - response to water deprivation, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009049 - inflorescence 
21053	_	APC3, OsAPC3	_	ANAPHASE PROMOTING COMPLEX 3			6	LOC_Os06g41750. 		Os06g0622500	LOC_Os06g41750.1						
21054	_	APC8, OsAPC8	_	ANAPHASE PROMOTING COMPLEX 8			2	LOC_Os02g43920.		Os02g0656300	LOC_Os02g43920.1				GO:0005680 - anaphase-promoting complex, GO:0051301 - cell division, GO:0030071 - regulation of mitotic metaphase/anaphase transition		
21055	_	APC1, OsAPC1	_	ANAPHASE PROMOTING COMPLEX 1			5			Os05g0354300 					GO:0005680 - anaphase-promoting complex		
21056	_	APC4, OsAPC4	_	ANAPHASE PROMOTING COMPLEX 4			2	LOC_Os02g54490.		Os02g0785900	LOC_Os02g54490.1				GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0005680 - anaphase-promoting complex, GO:0016021 - integral to membrane, GO:0030071 - regulation of mitotic metaphase/anaphase transition		
21057	_	APC2, OsAPC2	_	ANAPHASE PROMOTING COMPLEX 2			4	LOC_Os04g40830.		Os04g0484800	LOC_Os04g40830.1				GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0005680 - anaphase-promoting complex, GO:0031625 - ubiquitin protein ligase binding		
21058	_	APC11, OsAPC11	_	ANAPHASE PROMOTING COMPLEX 11			3	LOC_Os03g19059. GO:0097602: cullin family protein binding. GO:0061630: ubiquitin protein ligase activity.		Os03g0302700	LOC_Os03g19059.1				GO:0045842 - positive regulation of mitotic metaphase/anaphase transition, GO:0008270 - zinc ion binding, GO:0005680 - anaphase-promoting complex, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process		
21059	_		_	SAMBA			10	APC regulator. APC regulatory subunit.		Os10g0575950 							
21060	_		_	AP-1 complex subunit gamma-1			6	APC regulator. APC regulatory subunit. LOC_Os06g07090.		Os06g0167100	LOC_Os06g07090.1, LOC_Os06g07090.2				GO:0008565 - protein transporter activity, GO:0016192 - vesicle-mediated transport, GO:0005794 - Golgi apparatus, GO:0030131 - clathrin adaptor complex, GO:0006886 - intracellular protein transport		
21061	YTH10	OsYTH10, OsECT11, ECT11	YT521-B HOMOLOGY 10	YT521-B domain protein, YT521-B homology 10, T521-B homology family protein 10, Evolutionarily conserved C terminal region 11, YTH domain protein ECT11	YT521-B HOMOLOGY 10	yth10	7	APC regulator. APC regulatory subunit. N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.  PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os07g0170300	LOC_Os07g07490.1, LOC_Os07g07490.2				GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0003723 - RNA binding, GO:0003729 - mRNA binding, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0016102 - diterpenoid biosynthetic process	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0009066 - anther , PO:0009010 - seed , PO:0009005 - root 
21062	YTH3	OsYTH03, YTH03, OsYTH3, OsECT3, ECT3	YT521-B HOMOLOGY 3	YT521-B domain protein, YT521-B homology 03, T521-B homology family protein 03, Evolutionarily conserved C terminal region 3, YTH domain protein ECT3	YT521-B HOMOLOGY 3	yth03	3	APC regulator. APC regulatory subunit. N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA binding.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0158500	LOC_Os03g06240.1, LOC_Os03g06240.2				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0003723 - RNA binding, GO:0016102 - diterpenoid biosynthetic process, GO:0043488 - regulation of mRNA stability, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	PO:0009006 - shoot system , PO:0009030 - carpel 
21063	SEU	OsSEU, OsSEU1, SEU1	SEUSS	OsSEUSS, OsSEUSS 1, SEUSS 1			11	LOC_Os11g10060. APC regulator. APC regulatory subunit. a rice homolog of Arabidopsis thaliana SEU (SEUSS).	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0207000	LOC_Os11g10060.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21064	_	MAT1	_	MENAGE A TROIS 1, MAT1 assembly factor			11	LOC_Os11g28350. CDK-activating kinase complex.		Os11g0473100	LOC_Os11g28350.1				GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005675 - holo TFIIH complex, GO:0007049 - cell cycle, GO:0016301 - kinase activity, GO:0006281 - DNA repair, GO:0000079 - regulation of cyclin-dependent protein kinase activity		
21065	_	DLN40, OsDLN40	_	TFIIH p34 subunit, DLN repressor 40, DLN motif protein 40			2	TFIIH sub-complex.		Os02g0125800	LOC_Os02g03340.5, LOC_Os02g03340.4, LOC_Os02g03340.3, LOC_Os02g03340.2, LOC_Os02g03340.1				GO:0006289 - nucleotide-excision repair, GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain, GO:0008135 - translation factor activity, nucleic acid binding, GO:0006412 - translation, GO:0005675 - holo TFIIH complex, GO:0003684 - damaged DNA binding, GO:0000439 - core TFIIH complex		
21066	TFIIH-P44	OsvWA15, vWA15	TFIIH P44 SUBUNIT	TFIIH p44 subunit, von Willebrand factor A15	TFIIH P44 SUBUNIT		4	TFIIH sub-complex.	 Tolerance and resistance - Disease resistance	Os04g0508900	LOC_Os04g42990.1				GO:0006351 - transcription, DNA-dependent, GO:0000439 - core TFIIH complex, GO:0050832 - defense response to fungus, GO:0006289 - nucleotide-excision repair	TO:0000074 - blast disease	
21067	_		_	TFIIH p52 subunit			4	LOC_Os04g58350. TFIIH sub-complex.		Os04g0680000	LOC_Os04g58350.1				GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain, GO:0003690 - double-stranded DNA binding, GO:0003700 - transcription factor activity, GO:0000439 - core TFIIH complex, GO:0005675 - holo TFIIH complex, GO:0006289 - nucleotide-excision repair, GO:0004003 - ATP-dependent DNA helicase activity		
21068	_		_	TFIIH p62 subunit			8	LOC_Os08g25060. TFIIH sub-complex.		Os08g0338200	LOC_Os08g25060.1				GO:0000439 - core TFIIH complex, GO:0006351 - transcription, DNA-dependent, GO:0006289 - nucleotide-excision repair		
21069	PHT3	Os-PHT3, OsPHT3	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 3	putrescine N-hydroxycinnamoyltransferase, putrescine hydroxycinnamoyl transferase 3	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 3		9	combination of the best substrates: feruloyl-CoA/putrescine. KX430018, LOC_Os09g37180.	 Biochemical character	Os09g0543900	LOC_Os09g37180.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0009005 - root , PO:0009046 - flower 
21070	AHT1	Os-AHT1, OsAHT1	AGMATINE HYDROXYCINNAMOYL TRANSFERASE 1	agmatine hydroxycinnamoyl transferase 1	AGMATINE HYDROXYCINNAMOYL TRANSFERASE 1		4	one of the most structurally similar genes to NaAT1. LOC_Os04g56900. KX430015.	 Biochemical character	Os04g0664500	LOC_Os04g56900.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0009005 - root , PO:0009046 - flower 
21071	DEFL1	OsDEFL1, OsDf-01, Df-01, DEF1, OsDEF1	DEFENSIN-LIKE 1	defensin-like 1, defensin 1	DEFENSIN-LIKE 1		1		 Tolerance and resistance	Os01g0932700	LOC_Os01g70680.1				GO:0006952 - defense response		
21072	DEFL3	OsDEFL3, OsDf-03, Df-03	DEFENSIN-LIKE 3	defensin-like 3	DEFENSIN-LIKE 3		2		 Tolerance and resistance	Os02g0172500					GO:0006952 - defense response		
21073	DEFL4	OsDEFL4, OsDf-04, Df-04, DEF4, OsDEF4	DEFENSIN-LIKE 4	defensin-like 4, defensin 4	DEFENSIN-LIKE 4		2		 Tolerance and resistance	Os02g0172300	LOC_Os02g07624.1				GO:0050832 - defense response to fungus, GO:0031640 - killing of cells of another organism		
21074	DEFL5	OsDEFL5, OsDf-05, Df-05	DEFENSIN-LIKE 5	defensin-like 5	DEFENSIN-LIKE 5		2		 Tolerance and resistance	Os02g0172500					GO:0006952 - defense response		
21075	DEFL8	OsDEFL8, OsDf-08, Df-08, DEF8, OsDEF8	DEFENSIN-LIKE 8	defensin-like 8, DEFENSIN 8	DEFENSIN-LIKE 8	def8, def8-1, def8-2, def8-3	3	GO:0110127: phloem unloading. GO:0110126: phloem loading. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os03g0130300	LOC_Os03g03810.1				GO:0005615 - extracellular space, GO:0010233 - phloem transport, GO:0031640 - killing of cells of another organism, GO:0046870 - cadmium ion binding, GO:0050832 - defense response to fungus, GO:0010431 - seed maturation, GO:0046686 - response to cadmium ion, GO:0015691 - cadmium ion transport, GO:0055073 - cadmium ion homeostasis		PO:0025261 - pericycle cell , PO:0009089 - endosperm , PO:0009010 - seed , PO:0009039 - glume , PO:0003011 - root vascular system , PO:0005417 - phloem , PO:0007632 - seed maturation stage 
21076	DEFL9	OsDEFL9, OsDf-09, Df-09, DEF9, OsDEF9	DEFENSIN-LIKE 9	defensin-like 9, defensin 9	DEFENSIN-LIKE 9		4		 Tolerance and resistance	Os04g0189400	LOC_Os04g11130.1				GO:0050832 - defense response to fungus, GO:0031640 - killing of cells of another organism		
21077	DEFL10	OsDEFL10, OsDf-10, Df-10, DEF10, OsDEF10	DEFENSIN-LIKE 10	defensin-like 10, defensin 10	DEFENSIN-LIKE 10		4	gamma thionin protein.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance	Os04g0189800	LOC_Os04g11165.1				GO:0002213 - defense response to insect, GO:0006952 - defense response	TO:0000424 - brown planthopper resistance	
21078	DEFL11	OsDEFL11, OsDf-11, Df-11	DEFENSIN-LIKE 11	defensin-like 11	DEFENSIN-LIKE 11		4		 Tolerance and resistance	Os04g0189950					GO:0006952 - defense response		
21079	CAL2	DEFL12, OsDEFL12, OsDf-12, Df-12, OsCAL2, DEF12, OsDEF12	CADMIUM ACCUMULATION IN LEAF 2	defensin-like 12, cadmium accumulation in leaf 2, defensin 12	DEFENSIN-LIKE 12		4	the Closest Homolog of CAL1. TO:0006059: cadmium content trait. TO:1000056: shoot system cadmium content.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os04g0522100	LOC_Os04g44130.1				GO:0031640 - killing of cells of another organism, GO:0009505 - plant-type cell wall, GO:0046686 - response to cadmium ion, GO:0046870 - cadmium ion binding, GO:0015691 - cadmium ion transport, GO:0046911 - metal chelating activity, GO:0050832 - defense response to fungus		PO:0009005 - root , PO:0000025 - root tip 
21080	CCD1	OsCCD1	C-TERMINAL CENTRIN-LIKE DOMAIN 1	C-terminal centrin-like domain 1	C-TERMINAL CENTRIN-LIKE DOMAIN 1		6	GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os06g0683400	LOC_Os06g46950.1				GO:0005509 - calcium ion binding, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0051592 - response to calcium ion, GO:0047484 - regulation of response to osmotic stress, GO:0009738 - abscisic acid mediated signaling, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000006 - calcium sensitivity	
21081	_	OsCKA2-4, CKA2-4	_	casein kinase II alpha-subunit 4, CK2 alpha-subunit 4, CK2 alpha subunit 4			3			Os03g0763000	LOC_Os03g55490.1, LOC_Os03g55490.2				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
21082	_	OsSIRP1, SIRP1, DLN148, OsDLN148, OsRING219, RING219	_	salt-induced RING Finger Protein 1, DLN repressor 148, DLN motif protein 148, RING-type E3 ubiquitin ligase 219			5	GO:0061630 ubiquitin protein ligase activity. GO:1901001 negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0488800	LOC_Os05g40980.2, LOC_Os05g40980.1				GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0000209 - protein polyubiquitination	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
21083	_	OsRFP, OsRING229, RING229	_	RING Finger Protein, RING-type E3 ubiquitin ligase 229			2	LOC_Os02g05692. 	 Tolerance and resistance - Stress tolerance	Os02g0150700	LOC_Os02g05692.1, LOC_Os02g05692.2				GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0046685 - response to arsenic	TO:0006001 - salt tolerance	
21084	RING317	OsRFP, OsRING317, OsvWA14, vWA14	RING-TYPE E3 UBIQUITIN LIGASE 317	RING Finger Protein, RING-type E3 ubiquitin ligase 317, von Willebrand factor A14	RING-TYPE E3 UBIQUITIN LIGASE 317		4		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0508800	LOC_Os04g42980.1, LOC_Os04g42980.2				GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
21085	_	OsRFP, OsRING321, RING321	_	RING Finger Protein, RING-type E3 ubiquitin ligase 321			2	LOC_Os02g57750. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0823300	LOC_Os02g57750.1, LOC_Os02g57750.2				GO:0005737 - cytoplasm, GO:0004842 - ubiquitin-protein ligase activity, GO:0016874 - ligase activity, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0009966 - regulation of signal transduction	TO:0006001 - salt tolerance	
21086	DLN146	OsRFP, OsDLN146, OsRING180, RING180	DLN REPRESSOR 146	RING Finger Protein, DLN repressor 146, DLN motif protein 146, RING-type E3 ubiquitin ligase 180	DLN REPRESSOR 146		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0470700	LOC_Os05g39380.1				GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding	TO:0006001 - salt tolerance	
21087	_	OsRFP	_	RING Finger Protein			5	LOC_Os05g41785 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21088	_	OsRFP	_	RING Finger Protein			6	LOC_Os06g21389 (not found in MSU Rice Genome Annotation Project Release 7 data).	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21089	SNAT2	OsSNAT2	SEROTONIN N-ACETYLTRANSFERASE-2 	serotonin N-acetyltransferase-2, serotonin N-acetyltransferase 2	SEROTONIN N-ACETYLTRANSFERASE-2 		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0102000	LOC_Os08g01170.1				GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009408 - response to heat, GO:0005737 - cytoplasm, GO:0009607 - response to biotic stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0046686 - response to cadmium ion, GO:0009733 - response to auxin stimulus, GO:0031248 - protein acetyltransferase complex, GO:0009739 - response to gibberellin stimulus, GO:0006474 - N-terminal protein amino acid acetylation, GO:0009725 - response to hormone stimulus, GO:0009507 - chloroplast, GO:0030187 - melatonin biosynthetic process, GO:0009646 - response to absence of light, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress, GO:0004596 - peptide alpha-N-acetyltransferase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000075 - light sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000179 - biotic stress trait	
21090	SNAT1	OsSNAT1, OsSNAT, SNAT, OsGNAT2, GNAT2	SEROTONIN N-ACETYLTRANSFERASE-1	serotonin N-acetyltransferase-1, serotonin N-acetyltransferase 1, Gcn5-related N-acetyltransferase 2	SEROTONIN N-ACETYLTRANSFERASE-1		5	Q5KQI6. GO:1900056: negative regulation of leaf senescence. TO:0012012: leaf senescence duration.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity	Os05g0481000	LOC_Os05g40260.1				GO:0009646 - response to absence of light, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus, GO:0046686 - response to cadmium ion, GO:0031248 - protein acetyltransferase complex, GO:0030187 - melatonin biosynthetic process, GO:0006474 - N-terminal protein amino acid acetylation, GO:0004596 - peptide alpha-N-acetyltransferase activity, GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010446 - response to alkalinity, GO:0010150 - leaf senescence, GO:0009416 - response to light stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009725 - response to hormone stimulus	TO:0000276 - drought tolerance, TO:0000075 - light sensitivity, TO:0006001 - salt tolerance, TO:0000396 - grain yield, TO:0000249 - leaf senescence, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000152 - panicle number, TO:0000481 - alkali sensitivity, TO:0000303 - cold tolerance, TO:0000179 - biotic stress trait, TO:0000401 - plant growth hormone sensitivity, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000259 - heat tolerance	PO:0007041 - inflorescence emergence stage 
21091	_	Sdt97	_				6	LOC_Os06g44050. semidwarf mutant gene. a single dominant gene locus non-allelic to sd-1.	 Biochemical character,  Vegetative organ - Culm	Os06g0649800	LOC_Os06g44050.1				GO:0009686 - gibberellin biosynthetic process, GO:0008725 - DNA-3-methyladenine glycosylase I activity, GO:0006284 - base-excision repair	TO:0000207 - plant height	
21092	HDAC6	OsHDAC6, OsHDA706, HDA706	HISTONE DEACETYLASE 6	histone deacetylase 6	HISTONE DEACETYLASE 6	oshda706, oshda706#6, oshda706#10	6	HDA706 in Wei et al. 2021, Hou et al. 2021, Yang et al. 2024. RPD/HDA1 family. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0141051: histone H4K deacetylase activity. GO:0090351: seedling development. TO:0000949: seedling growth and development trait.	 Biochemical character,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0571100	LOC_Os06g37420.1, LOC_Os06g37420.2				GO:0004407 - histone deacetylase activity, GO:0009733 - response to auxin stimulus, GO:0000118 - histone deacetylase complex, GO:0009628 - response to abiotic stimulus, GO:0005737 - cytoplasm, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051607 - defense response to virus, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016575 - histone deacetylation, GO:0016787 - hydrolase activity, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0046872 - metal ion binding	TO:0000148 - viral disease resistance, TO:0000102 - phosphorus sensitivity, TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000227 - root length	PO:0025034 - leaf 
21093	HDAC10	OsHDAC10, HDA714, OsHDA714, ASDAC, OsASDAC	HISTONE DEACETYLASE 10	histone deacetylase 10, N-acetylserotonin deacetylase	HISTONE DEACETYLASE 10	hda714, hda714-1	12	ABA95964. Q2QWU2. rice ortholog of AtHDAC14. GO:2000377: regulation of reactive oxygen species metabolic process. HDA714 in Wei et al. 2021, Hou et al. 2021. RPD/HDA1 family.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Other	Os12g0182700	LOC_Os12g08220.1				GO:0005829 - cytosol, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016575 - histone deacetylation, GO:0008270 - zinc ion binding, GO:0043621 - protein self-association, GO:0051721 - protein phosphatase 2A binding, GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific), GO:0048487 - beta-tubulin binding, GO:0043014 - alpha-tubulin binding, GO:0005634 - nucleus, GO:0006417 - regulation of translation, GO:0018533 - peptidyl-cysteine acetylation, GO:0009628 - response to abiotic stimulus, GO:0016787 - hydrolase activity, GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0004407 - histone deacetylase activity, GO:0009409 - response to cold, GO:0019213 - deacetylase activity, GO:0009741 - response to brassinosteroid stimulus, GO:0006970 - response to osmotic stress, GO:0000118 - histone deacetylase complex, GO:0005737 - cytoplasm, GO:0009733 - response to auxin stimulus, GO:0000122 - negative regulation of transcription from RNA polymerase II promoter, GO:0009651 - response to salt stress, GO:0042903 - tubulin deacetylase activity, GO:0009413 - response to flooding, GO:0042442 - melatonin catabolic process, GO:0030186 - melatonin metabolic process	TO:0000303 - cold tolerance, TO:0000102 - phosphorus sensitivity, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000608 - sodium content, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	PO:0025034 - leaf 
21094	LTS1 	OsNaPRT1, OsNaPRT1/LTS1, NaPRT1	LEAF TIP SENESCENCE 1  	Leaf Tip Senescence 1, Nicotinate Phosphoribosyltransferase 1, NaPRTase 1	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1	lts1	3	LOC_Os03g62110. TO:0000748 leaf anatomy and morphology trait.	 Vegetative organ - Culm,  Biochemical character,  Vegetative organ - Leaf	Os03g0837300	LOC_Os03g62110.2, LOC_Os03g62110.3				GO:0043970 - histone H3-K9 acetylation, GO:0009435 - NAD biosynthetic process, GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity, GO:0019358 - nicotinate nucleotide salvage, GO:0034355 - NAD salvage, GO:0010150 - leaf senescence, GO:0004516 - nicotinate phosphoribosyltransferase activity, GO:0006309 - DNA fragmentation involved in apoptosis	TO:0000249 - leaf senescence, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content	
21095	NaPRT2	OsNaPRT2	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2	Nicotinate Phosphoribosyltransferase 2, NaPRTase 2	NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2		4	LOC_Os04g35060.	 Biochemical character	Os04g0429800	LOC_Os04g35060.1				GO:0009435 - NAD biosynthetic process, GO:0004516 - nicotinate phosphoribosyltransferase activity, GO:0019358 - nicotinate nucleotide salvage, GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity		
21096	NIC	OsNIC	NICOTINAMIDASE	nicotinamidase	NICOTINAMIDASE		2		 Biochemical character	Os02g0606800 	LOC_Os02g39400.1				GO:0008152 - metabolic process, GO:0016787 - hydrolase activity, GO:0034355 - NAD salvage		
21097	AL1 	AL1a, AL1b, AL1c	ALBINO LEAF 1			al1	3	sole octotricopeptide repeat protein (RAP).	 Vegetative organ - Root,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os03g0425000 	LOC_Os03g31150.1, LOC_Os03g31150.2, LOC_Os03g31150.3				GO:0009658 - chloroplast organization, GO:0006364 - rRNA processing, GO:0010027 - thylakoid membrane organization	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000227 - root length, TO:0000495 - chlorophyll content	
21098	BT	OsBT, OsBTBZ2, BTBZ2	_	BT1/BT2 ortholog, BTB-type E3 ubiquitin ligase Z2		Osbt	1	Bric-a-Brac/Tramtrack/Broad (BTB) gene family. GO:1902025 nitrate import. TO:0020093: nitrogen content. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0908200	LOC_Os01g68020.1				GO:0009651 - response to salt stress, GO:0042594 - response to starvation, GO:0003712 - transcription cofactor activity, GO:0004402 - histone acetyltransferase activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0015706 - nitrate transport	TO:0000329 - tillering ability, TO:0000429 - salt sensitivity, TO:0000011 - nitrogen sensitivity	
21099	DPB3-2	OsDPB3-2	DNA POLYMERASE II SUBUNIT B3-2	DNA polymerase II subunit B3-2	DNA POLYMERASE II SUBUNIT B3-2		3	LOC_Os03g63530. a rice DPB3-1 homologue.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0852300	LOC_Os03g63530.1, LOC_Os03g63530.2				GO:0005634 - nucleus, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
21100	PCS5	OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full, OsPCS5	PHYTOCHELATIN SYNTHASE 5	Phytochelatin Synthase, phytochelatin synthase 2	PHYTOCHELATIN SYNTHASE 5		6	KU670827, KU670828. LC314598, LC314599. LC192430, LC192431. OsPCS2 in Das et al. 2017, Yamazaki et al. 2017, Rahim et al. 2022, Niyoifasha et al. 2023. OsPCS5 in Shen et al. 2010, Park et al. 2019. TO:0006059: cadmium concentration. TO:0006054: arsenic concentration. OsPCS1 (OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full) in Uraguchi et al. 2017. GO:0071585: detoxification of cadmium ion. GO:0071722: detoxification of arsenic-containing substance. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0102300	LOC_Os06g01260.1, LOC_Os06g01260.2				GO:0010043 - response to zinc ion, GO:0046688 - response to copper ion, GO:0046687 - response to chromate, GO:0046689 - response to mercury ion, GO:0043181 - vacuolar sequestering, GO:0010038 - response to metal ion, GO:0046685 - response to arsenic, GO:0046938 - phytochelatin biosynthetic process, GO:0046872 - metal ion binding, GO:0016756 - glutathione gamma-glutamylcysteinyltransferase activity, GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion, GO:0005737 - cytoplasm	TO:0000021 - copper sensitivity, TO:0000080 - micronutrient sensitivity, TO:0000034 - chromium sensitivity, TO:0000351 - zinc sensitivity	PO:0025034 - leaf , PO:0009005 - root 
21102	SAT1;1	OsSAT, SAT, OsSAT1;1	SERINE ACETYLTRANSFERASE 1;1	serine acetyl transferase, serine acetyltransferase 1;1	SERINE ACETYLTRANSFERASE 1;1		1	Q8W0E4.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0720700	LOC_Os01g52260.1				GO:0009001 - serine O-acetyltransferase activity, GO:0006535 - cysteine biosynthetic process from serine, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009734 - auxin mediated signaling pathway, GO:0009738 - abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0006790 - sulfur metabolic process, GO:0005737 - cytoplasm	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009005 - root 
21103	SAT3	OsSAT, SAT, OsSAT3	SERINE ACETYLTRANSFERASE 3	serine acetyl transferase, serine acetyltransferase 3	SERINE ACETYLTRANSFERASE 3		3	Q10S58.	 Biochemical character	Os03g0133900	LOC_Os03g04140.1, LOC_Os03g04140.2				GO:0006535 - cysteine biosynthetic process from serine, GO:0009001 - serine O-acetyltransferase activity, GO:0005737 - cytoplasm, GO:0006790 - sulfur metabolic process		PO:0025034 - leaf 
21104	ATPS	OsATPS, OsaATPS, PAPSS	ATP SULFURYLASE	ATP sulfurylase, bi-functional 3'-phosphoadenosine 5'-phosphosulfate synthethase	ATP SULFURYLASE		3	a predicted target gene of OsamiR395.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0743900	LOC_Os03g53230.1				GO:0000103 - sulfate assimilation, GO:0004781 - sulfate adenylyltransferase (ATP) activity, GO:0042594 - response to starvation, GO:0006790 - sulfur metabolic process, GO:0009409 - response to cold, GO:0009970 - cellular response to sulfate starvation	TO:0000303 - cold tolerance, TO:0000007 - sulfur sensitivity	
21105	RALF1	OsRALF-1, OsRALF1, RALF-1	RAPID ALKALIZATION FACTOR 1	Rapid alkalization factor 1	RAPID ALKALIZATION FACTOR 1		11	LOC_Os11g26030.1		Os11g0447300	LOC_Os11g26030.1				GO:0005739 - mitochondrion, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0042254 - ribosome biogenesis		PO:0009010 - seed 
21106	RALF2	OsRALF-2, OsRALF2, RALF-2, OsFAR5, FAR5	RAPID ALKALIZATION FACTOR 2	Rapid alkalization factor 2, Fatty acyl-CoA reductase 5	FATTY ACYL-COA REDUCTASE 5		4	GO:0035336 long-chain fatty-acyl-CoA metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0353600	LOC_Os04g28520.1, LOC_Os04g28520.2				GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010229 - inflorescence development, GO:0010345 - suberin biosynthetic process, GO:0043231 - intracellular membrane-bounded organelle	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
21107	RALF3	OsRALF-3, OsRALF3, RALF-3	RAPID ALKALIZATION FACTOR 3	Rapid alkalization factor 3	RAPID ALKALIZATION FACTOR 3		1	LOC_Os01g10470.		Os01g0201400	LOC_Os01g10470.1				GO:0009506 - plasmodesma, GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0019722 - calcium-mediated signaling		PO:0009049 - inflorescence 
21108	RALF4	OsRALF-4, OsRALF4, RALF-4	RAPID ALKALIZATION FACTOR 4	Rapid alkalization factor 4	RAPID ALKALIZATION FACTOR 4		1	LOC_Os01g25540.1		Os01g0357900	LOC_Os01g25540.1				GO:0005622 - intracellular, GO:0009506 - plasmodesma, GO:0004871 - signal transducer activity, GO:0019722 - calcium-mediated signaling		PO:0009049 - inflorescence , PO:0009005 - root 
21109	RALF5	OsRALF-5, OsRALF5, RALF-5	RAPID ALKALIZATION FACTOR 5	Rapid alkalization factor 5	RAPID ALKALIZATION FACTOR 5		1	LOC_Os01g15320		Os01g0257100	LOC_Os01g15320.1				GO:0019722 - calcium-mediated signaling, GO:0009506 - plasmodesma, GO:0005622 - intracellular, GO:0004871 - signal transducer activity		PO:0009049 - inflorescence , PO:0009005 - root 
21110	RALF6	OsRALF-6, OsRALF6, RALF-6	RAPID ALKALIZATION FACTOR 6	Rapid alkalization factor 6	RAPID ALKALIZATION FACTOR 6		1	LOC_Os01g25560.		Os01g0358100	LOC_Os01g25560.1				GO:0005622 - intracellular, GO:0004871 - signal transducer activity, GO:0019722 - calcium-mediated signaling, GO:0009506 - plasmodesma		PO:0009049 - inflorescence 
21111	RALF7	OsRALF-7, OsRALF7, RALF-7	RAPID ALKALIZATION FACTOR 7	Rapid alkalization factor 7	RAPID ALKALIZATION FACTOR 7		1	LOC_Os01g70690.		Os01g0932950	LOC_Os01g70690.1				GO:0005622 - intracellular, GO:0004871 - signal transducer activity, GO:0019722 - calcium-mediated signaling, GO:0009506 - plasmodesma		
21112	RALF8	OsRALF-8, OsRALF8, RALF-8	RAPID ALKALIZATION FACTOR 8	Rapid alkalization factor 8	RAPID ALKALIZATION FACTOR 8		2	LOC_Os02g44940.		Os02g0670500	LOC_Os02g44940.1				GO:0009506 - plasmodesma, GO:0019722 - calcium-mediated signaling, GO:0005622 - intracellular, GO:0004871 - signal transducer activity		PO:0009010 - seed 
21113	RALF9	OsRALF-9, OsRALF9, RALF-9	RAPID ALKALIZATION FACTOR 9	Rapid alkalization factor 9	RAPID ALKALIZATION FACTOR 9		3	LOC_Os03g22440.		Os03g0345000	LOC_Os03g22440.1						
21114	RALF10	OsRALF-10, OsRALF10, RALF-10	RAPID ALKALIZATION FACTOR 10	Rapid alkalization factor 10	RAPID ALKALIZATION FACTOR 10		4	LOC_Os04g28720.		Os04g0356000	LOC_Os04g28720.1						
21115	RALF11	OsRALF-11, OsRALF11, RALF-11	RAPID ALKALIZATION FACTOR 11	Rapid alkalization factor 11	RAPID ALKALIZATION FACTOR 11		4	LOC_Os04g28830.		Os04g0357400	LOC_Os04g28830.1						
21116	RALF12	OsRALF-12, OsRALF12, RALF-12	RAPID ALKALIZATION FACTOR 12	Rapid alkalization factor 12	RAPID ALKALIZATION FACTOR 12		4	LOC_Os04g28840.		Os04g0357500	LOC_Os04g28840.1						PO:0009010 - seed 
21117	RALF13	OsRALF-13, OsRALF13, RALF-13	RAPID ALKALIZATION FACTOR 13	Rapid alkalization factor 13	RAPID ALKALIZATION FACTOR 13		4	LOC_Os04g28850.		Os04g0357700	LOC_Os04g28850.1						PO:0009049 - inflorescence 
21118	RALF14	OsRALF-14, OsRALF14, RALF-14	RAPID ALKALIZATION FACTOR 14	Rapid alkalization factor 14	RAPID ALKALIZATION FACTOR 14		4	LOC_Os04g31410.		Os04g0382900	LOC_Os04g31410.1						PO:0009010 - seed , PO:0009049 - inflorescence 
21119	RALF15	OsRALF-15, OsRALF15, RALF-15	RAPID ALKALIZATION FACTOR 15	Rapid alkalization factor 15	RAPID ALKALIZATION FACTOR 15		4	LOC_Os04g31430.		Os04g0383100	LOC_Os04g31430.1						PO:0009010 - seed , PO:0025034 - leaf , PO:0020148 - shoot apical meristem 
21120	RALF16	OsRALF-16, OsRALF16, RALF-16	RAPID ALKALIZATION FACTOR 16	Rapid alkalization factor 16	RAPID ALKALIZATION FACTOR 16		4	LOC_Os04g31460.		Os04g0383700	LOC_Os04g31460.1						PO:0009049 - inflorescence 
21121	RALF17	OsRALF-17, OsRALF17, RALF-17	RAPID ALKALIZATION FACTOR 17	Rapid alkalization factor 17	RAPID ALKALIZATION FACTOR 17		4	LOC_Os04g31484.		Os04g0384000	LOC_Os04g31484.1						
21122	RALF18	OsRALF-18, OsRALF18, RALF-18	RAPID ALKALIZATION FACTOR 18	Rapid alkalization factor 18	RAPID ALKALIZATION FACTOR 18		4	LOC_Os04g31520.			LOC_Os04g31520						PO:0009005 - root , PO:0009049 - inflorescence 
21123	RALF19	OsRALF-19, OsRALF19, RALF-19	RAPID ALKALIZATION FACTOR 19	Rapid alkalization factor 19	RAPID ALKALIZATION FACTOR 19		4	LOC_Os04g31550.		Os04g0384800	LOC_Os04g31550.1						PO:0009049 - inflorescence 
21124	RALF20	OsRALF-20, OsRALF20, RALF-20	RAPID ALKALIZATION FACTOR 20	Rapid alkalization factor 20	RAPID ALKALIZATION FACTOR 20		4	LOC_Os04g54090.		Os04g0633400	LOC_Os04g54090.1						PO:0009010 - seed 
21125	RALF21	OsRALF-21, OsRALF21, RALF-21	RAPID ALKALIZATION FACTOR 21	Rapid alkalization factor 21	RAPID ALKALIZATION FACTOR 21		5	LOC_Os05g11330.		Os05g0203000	LOC_Os05g11330.1						PO:0009049 - inflorescence 
21126	RALF23	OsRALF-23, OsRALF23, RALF-23	RAPID ALKALIZATION FACTOR 23	Rapid alkalization factor 23	RAPID ALKALIZATION FACTOR 23		7	LOC_Os07g13310.		Os07g0237200	LOC_Os07g13310.1						PO:0009049 - inflorescence 
21127	RALF24	OsRALF-24, OsRALF24, RALF-24	RAPID ALKALIZATION FACTOR 24	Rapid alkalization factor 24	RAPID ALKALIZATION FACTOR 24		7	LOC_Os07g13380.		Os07g0238000	LOC_Os07g13380.1						PO:0009010 - seed 
21128	RALF25	OsRALF-25, OsRALF25, RALF-25	RAPID ALKALIZATION FACTOR 25	Rapid alkalization factor 25	RAPID ALKALIZATION FACTOR 25		7	LOC_Os07g13440.		Os07g0238500	LOC_Os07g13440.1						
21129	RALF26	OsRALF-26, OsRALF26, RALF-26	RAPID ALKALIZATION FACTOR 26	Rapid alkalization factor 26	RAPID ALKALIZATION FACTOR 26		7	LOC_Os07g13450.		Os07g0238600	LOC_Os07g13450.1						PO:0009049 - inflorescence 
21130	RALF27	OsRALF-27, OsRALF27, RALF-27	RAPID ALKALIZATION FACTOR 27	Rapid alkalization factor 27	RAPID ALKALIZATION FACTOR 27		10	LOC_Os10g18170		Os10g0328900	LOC_Os10g18170.1				GO:0009506 - plasmodesma, GO:0005622 - intracellular, GO:0019722 - calcium-mediated signaling, GO:0004871 - signal transducer activity		PO:0009005 - root 
21131	RALF29	OsRALF-29, OsRALF29, RALF-29	RAPID ALKALIZATION FACTOR 29	Rapid alkalization factor 29	RAPID ALKALIZATION FACTOR 29		10	LOC_Os10g41999.		Os10g0569500	LOC_Os10g41999.1						PO:0009010 - seed 
21132	RALF31	OsRALF-31, OsRALF31, RALF-31	RAPID ALKALIZATION FACTOR 31	Rapid alkalization factor 31	RAPID ALKALIZATION FACTOR 31		11	LOC_Os11g26190.		Os11g0448700	LOC_Os11g26190.1						PO:0009049 - inflorescence 
21133	RALF32	OsRALF-32, OsRALF32, RALF-32	RAPID ALKALIZATION FACTOR 32	Rapid alkalization factor 32	RAPID ALKALIZATION FACTOR 32		11	LOC_Os11g26340.		Os11g0449600	LOC_Os11g26340.1						PO:0009049 - inflorescence 
21134	RALF33	OsRALF-33, OsRALF33, RALF-33	RAPID ALKALIZATION FACTOR 33	Rapid alkalization factor 33	RAPID ALKALIZATION FACTOR 33		11	LOC_Os11g26880.		Os11g0456000	LOC_Os11g26880.1				GO:0005622 - intracellular, GO:0019722 - calcium-mediated signaling, GO:0009506 - plasmodesma, GO:0004871 - signal transducer activity		PO:0009049 - inflorescence 
21135	RALF34	OsRALF-34, OsRALF34, RALF-34, OsRALF45, RALF45	RAPID ALKALIZATION FACTOR 34	Rapid alkalization factor 34, rapid alkalinization factor 45	RAPID ALKALIZATION FACTOR 34		12	LOC_Os12g11660. OsRALF45 in Jiang et al. 2024.	 Tolerance and resistance - Stress tolerance	Os12g0218300	LOC_Os12g11660.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0020148 - shoot apical meristem , PO:0025034 - leaf , PO:0009049 - inflorescence 
21136	RALF35	OsRALF-35, OsRALF35, RALF-35, OsRALF46, RALF46	RAPID ALKALIZATION FACTOR 35	Rapid alkalization factor 35, rapid alkalinization factor 46	RAPID ALKALIZATION FACTOR 35		12	LOC_Os12g12000. OsRALF46 in Jiang et al. 2024.	 Tolerance and resistance - Stress tolerance	Os12g0221600	LOC_Os12g12000.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0025034 - leaf 
21137	RALF36	OsRALF-36, OsRALF36, RALF-36	RAPID ALKALIZATION FACTOR 36	Rapid alkalization factor 36	RAPID ALKALIZATION FACTOR 36		12	LOC_Os12g21760.			LOC_Os12g21760						
21138	RALF37	OsRALF-37, OsRALF37, RALF-37	RAPID ALKALIZATION FACTOR 37	Rapid alkalization factor 37	RAPID ALKALIZATION FACTOR 37		12			Os12g0541700	LOC_Os12g35670.1				GO:0019722 - calcium-mediated signaling, GO:0004871 - signal transducer activity, GO:0009506 - plasmodesma, GO:0005622 - intracellular		PO:0009005 - root , PO:0009010 - seed , PO:0020148 - shoot apical meristem , PO:0009049 - inflorescence 
21139	RALF38	OsRALF-38, OsRALF38, RALF-38	RAPID ALKALIZATION FACTOR 38	Rapid alkalization factor 38	RAPID ALKALIZATION FACTOR 38		12	LOC_Os12g35690.		Os12g0542000	LOC_Os12g35690.1				GO:0019722 - calcium-mediated signaling, GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0009506 - plasmodesma		PO:0009049 - inflorescence 
21140	RALF39	OsRALF-39, OsRALF39, RALF-39	RAPID ALKALIZATION FACTOR 39	Rapid alkalization factor 39	RAPID ALKALIZATION FACTOR 39		12	LOC_Os12g38330.		Os12g0571400	LOC_Os12g38330.1						
21141	RALF40	OsRALF-40, OsRALF40, RALF-40	RAPID ALKALIZATION FACTOR 40	Rapid alkalization factor 40	RAPID ALKALIZATION FACTOR 40		12	LOC_Os12g38340.		Os12g0571500	LOC_Os12g38340.1						PO:0009010 - seed 
21142	RALF41	OsRALF-41, OsRALF41, RALF-41	RAPID ALKALIZATION FACTOR 41	Rapid alkalization factor 41	RAPID ALKALIZATION FACTOR 41		12	LOC_Os12g38350.		Os12g0571600	LOC_Os12g38350.1						
21143	RALF42	OsRALF-42, OsRALF42, RALF-42	RAPID ALKALIZATION FACTOR 42	Rapid alkalization factor 42	RAPID ALKALIZATION FACTOR 42		12	LOC_Os12g38360.		Os12g0571700	LOC_Os12g38360.1						PO:0009049 - inflorescence 
21144	RALF43	OsRALF-43, OsRALF43, RALF-43	RAPID ALKALIZATION FACTOR 43	Rapid alkalization factor 43	RAPID ALKALIZATION FACTOR 43		12	LOC_Os12g38370.			LOC_Os12g38370						PO:0009049 - inflorescence , PO:0009005 - root 
21145	_	OsBDG1, BDG1	_	OsBUL1 DOWNSTREAM GENE1, OsBUL1 DOWNSTREAM GENE 1, BUL1 DOWNSTREAM GENE1, BUL1 DOWNSTREAM GENE 1			11	similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1. a small protein with short leucine-rich- repeats. BRI1 in Chauhan et al. 2019.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os11g0514400 	LOC_Os11g31530.1				GO:0009609 - response to symbiotic bacterium, GO:0016301 - kinase activity, GO:0009651 - response to salt stress, GO:0044403 - symbiosis, encompassing mutualism through parasitism	TO:0006001 - salt tolerance, TO:0000206 - leaf angle, TO:0000397 - grain size	PO:0020039 - leaf lamina , PO:0009049 - inflorescence 
21146	PRF2	OsPRF2	PROFILIN 2	Profilin-2, Profilin 2	PROFILIN 2		6	LOC_Os06g05880. Q5VMJ3.		Os06g0152100	LOC_Os06g05880.1				GO:0005938 - cell cortex, GO:0003785 - actin monomer binding, GO:0015629 - actin cytoskeleton, GO:0042989 - sequestering of actin monomers		
21147	_	OsRFP, OsRING90, RING90	_	RING finger protein, RING-type E3 ubiquitin ligase 90			1	LOC_Os01g15630. 		Os01g0261100	LOC_Os01g15630.1, LOC_Os01g15630.2				GO:0008270 - zinc ion binding		
21148	ZFP1 	OsRFP, OsZFP1, UCIP2, OsUCIP2, OsRING145, RING145	ZINC FINGER PROTEIN 1	RING finger protein, E3 ligase OsZFP1, OsUBC26 Interact Protein 2, RING-type E3 ubiquitin ligase 145	ZINC FINGER PROTEIN 1		1	a zinc finger C3H2C3-type domain-containing protein. E3 ligase. GO:0061630 ubiquitin protein ligase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0667700	LOC_Os01g47740.1, LOC_Os01g47740.2, LOC_Os01g47740.3, LOC_Os01g47740.4				GO:0008270 - zinc ion binding, GO:0050832 - defense response to fungus, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0000209 - protein polyubiquitination	TO:0000074 - blast disease	
21149	_	OsRFP, OsRING31, RING31	_	RING finger protein, RING-type E3 ubiquitin ligase 31			1	LOC_Os01g70160. GO:0061630 ubiquitin protein ligase activity.		Os01g0926200	LOC_Os01g70160.1				GO:0000209 - protein polyubiquitination, GO:0008270 - zinc ion binding, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
21150	_	OsRFP, OsRING282, RING282	_	RING finger protein, RING-type E3 ubiquitin ligase 282			3	LOC_Os03g20980. 		Os03g0326300	LOC_Os03g20980.1				GO:0008270 - zinc ion binding		
21151	_	OsRFP, OsRING177, RING177	_	RING finger protein, RING-type E3 ubiquitin ligase 177			3	LOC_Os03g22830. GO:0061630 ubiquitin protein ligase activity.		Os03g0351800	LOC_Os03g22830.1, LOC_Os03g22830.2				GO:0008270 - zinc ion binding, GO:0000209 - protein polyubiquitination, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
21152	_	OsRFP, OsRING218, RING218	_	RING finger protein, RING-type E3 ubiquitin ligase 218			3	LOC_Os03g59760. GO:0061630 ubiquitin protein ligase activity.		Os03g0812200	LOC_Os03g59760.1, LOC_Os03g59760.2				GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0000209 - protein polyubiquitination, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
21153	DLN108	OsRFP, OsDLN108, UCIP3, OsUCIP3, OsRING214, RING214	DLN REPRESSOR 108	RING finger protein, DLN repressor 108, DLN motif protein 108, OsUBC26 Interact Protein 3, RING-type E3 ubiquitin ligase 214	DLN REPRESSOR 108		4			Os04g0185500	LOC_Os04g10680.5, LOC_Os04g10680.4, LOC_Os04g10680.3, LOC_Os04g10680.2, LOC_Os04g10680.1				GO:0008270 - zinc ion binding		
21154	DLN115	OsRFP, OsDLN115, OsRING354, RING354	_	RING finger protein, DLN repressor 115, DLN motif protein 115, RING-type E3 ubiquitin ligase 354			4	GO:0061630 ubiquitin protein ligase activity.		Os04g0511600	LOC_Os04g43220.4, LOC_Os04g43220.3, LOC_Os04g43220.2, LOC_Os04g43220.1				GO:0008270 - zinc ion binding, GO:0000209 - protein polyubiquitination, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0051301 - cell division, GO:0048364 - root development, GO:0005886 - plasma membrane		
21155	_	OsRFP, OsRING393, RING393	_	RING finger protein, RING-type E3 ubiquitin ligase 393			5	LOC_Os05g01940. GO:0061630 ubiquitin protein ligase activity.		Os05g0110000	LOC_Os05g01940.1				GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0000209 - protein polyubiquitination, GO:0008270 - zinc ion binding, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process		
21156	_	OsRFP, RLIM, OsRLIM, OsRING399, RING399	_	RING finger protein, E3 ubiquitin-protein ligase RLIM, RING-type E3 ubiquitin ligase 399			5	GO:0061630 ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os05g0389600	LOC_Os05g32350.1				GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0046685 - response to arsenic		
21157	_	OsRFP, OsMAR1, MAR1, OsRING230, RING230	_	RING finger protein, microtubule-associated RING  nger protein 1, RING-type E3 ubiquitin ligase 230			6	LOC_Os06g48040. GO:1901001: negative regulation of response to salt stress.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0695600	LOC_Os06g48040.1				GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0046685 - response to arsenic, GO:0009651 - response to salt stress, GO:0008270 - zinc ion binding, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
21158	_	OsRFP, OsRING232, RING232	_	RING finger protein, RING-type E3 ubiquitin ligase 232			8	LOC_Os08g14320. 	 Tolerance and resistance - Stress tolerance	Os08g0241400	LOC_Os08g14320.1				GO:0046685 - response to arsenic, GO:0008270 - zinc ion binding		
21159	AIR2	OsRFP, RFP, OsAIR2, OsRING271, RING271	ARSENIC-INDUCED RING FINGER E3 LIGASE 2	RING finger protein, arsenic-induced RING finger E3 ligase 2, As-Induced RING E3 ligase 2, arsenic-induced RING finger protein 2, RING-type E3 ubiquitin ligase 271	ARSENIC-INDUCED RING FINGER E3 LIGASE 2		11	GO:0061630 ubiquitin protein ligase activity. TO:0006054: arsenic content trait.	 Tolerance and resistance - Stress tolerance	Os11g0572500	LOC_Os11g36430.1, LOC_Os11g36430.2, LOC_Os11g36430.3, LOC_Os11g36430.5				GO:0046685 - response to arsenic, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation, GO:0009845 - seed germination, GO:0009651 - response to salt stress, GO:0000209 - protein polyubiquitination, GO:0009408 - response to heat, GO:0008270 - zinc ion binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000227 - root length, TO:0000259 - heat tolerance	
21160	DLN24	OsRFP, OsDLN24, OsRING179, RING179	DLN REPRESSOR 24	RING finger protein, DLN repressor 24, DLN motif protein 24, RING-type E3 ubiquitin ligase 179	DLN REPRESSOR 24		1			Os01g0830200	LOC_Os01g61420.1				GO:0008270 - zinc ion binding		
21161	RING86	OsRFP, OsRING86, OsvWA2, vWA2, OsRGLG1, RGLG1	RING-TYPE E3 UBIQUITIN LIGASE 86	RING finger protein, RING-type E3 ubiquitin ligase 86, von Willebrand factor A2, RING DOMAIN LIGASE1, RING DOMAIN LIGASE 1	RING-TYPE E3 UBIQUITIN LIGASE 86		1	GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0908700	LOC_Os01g68060.1				GO:0002238 - response to molecule of fungal origin, GO:0070534 - protein K63-linked ubiquitination, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0008270 - zinc ion binding	TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
21162	PIE1	OsRFP, OsPIE1, OsRING213, RING213	PI-STARVATION-INDUCED E3 LIGASE 1	RING finger protein, Pi-starvation-induced E3 ligase 1, RING-type E3 ubiquitin ligase 213	PI-STARVATION-INDUCED E3 LIGASE 1	ospie1	1	TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os01g0954400	LOC_Os01g72480.1				GO:0042594 - response to starvation, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0055062 - phosphate ion homeostasis		
21163	_	OsRFP, OsRING276, RING276	_	RING finger protein, RING-type E3 ubiquitin ligase 276			3	LOC_Os03g01720. 		Os03g0107500	LOC_Os03g01720.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0005737 - cytoplasm, GO:0009966 - regulation of signal transduction		
21164	_	OsRFP, OsRING240, RING240	_	RING finger protein, RING-type E3 ubiquitin ligase 240			3	LOC_Os03g43360. 		Os03g0632800	LOC_Os03g43360.2				GO:0008270 - zinc ion binding		
21165	_	OsRFP, OsSIRP2, SIRP2, OsRING131, RING131	_	RING finger protein, salt-induced RING E3 ligase 2, salt induced Really Interesting New Gene finger protein 2, RING-type E3 ubiquitin ligase 131			3	LOC_Os03g58390. 	 Tolerance and resistance - Stress tolerance	Os03g0798200	LOC_Os03g58390.1				GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21166	PHD29	OsRFP, OsPHD29, OsRING12, RING12	PHD FINGER PROTEIN 29	RING finger protein, Plant homeo-domain finger protein 29, PHD finger protein 29, RING-type E3 ubiquitin ligase 12	PHD FINGER PROTEIN 29		6	BGIOSGA022703. B8B0L9 (indica).		Os06g0283200	LOC_Os06g17280.1				GO:0008270 - zinc ion binding		
21167	_	OsRFP, OsRING412, RING412	_	RING finger protein, RING-type E3 ubiquitin ligase 412			7	LOC_Os07g31650. 		Os07g0499800	LOC_Os07g31650.1				GO:0008270 - zinc ion binding		
21168	DLN198	OsRFP, OsDLN198, OsPHD30, PHD30, OsRING82, RING82	DLN REPRESSOR 198	RING finger protein, DLN repressor 198, DLN motif protein 198, Plant homeo-domain finger protein 30, PHD finger protein 30, RING-type E3 ubiquitin ligase 82	DLN REPRESSOR 198		7	BGIOSGA023675. B8B6A0 (indica).		Os07g0690300	LOC_Os07g49030.2, LOC_Os07g49030.1				GO:0008270 - zinc ion binding		
21170	SADR1	OsRFP, OsSADR1, OsSADRI, SADRI, OsRING105, RING105	SALT, ABA AND DROUGHT STRESS-INDUCED RING FINGER PROTEIN 1	"RING finger protein, \"Salt-, ABA- and Drought-Induced RING Finger Protein 1\", \"salt, ABA and drought stress-induced RING finger protein 1\", RING-type E3 ubiquitin ligase 105"	SALT, ABA AND DROUGHT STRESS-INDUCED RING FINGER PROTEIN 1		11	LOC_Os11g07450. GO:1901001: negative regulation of response to salt stress. GO:0090333: regulation of stomatal closure. orthologous genes: Arabidopsis (At1G47570), Zea mays (GRMZ2G000014) and Brachypodium distachyon (Bradi4G24480).	 Tolerance and resistance - Stress tolerance	Os11g0175500	LOC_Os11g07450.1, LOC_Os11g07450.2				GO:0005829 - cytosol, GO:0004842 - ubiquitin-protein ligase activity, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0010118 - stomatal movement, GO:0009414 - response to water deprivation, GO:0007093 - mitotic cell cycle checkpoint	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000227 - root length	
21171	_	OsRFP, OsRING374, RING374	_	RING finger protein, RING-type E3 ubiquitin ligase 374			12	LOC_Os12g10700. 		Os12g0209700	LOC_Os12g10700.1				GO:0008270 - zinc ion binding		
21172	_	OsRFP, OsRING343, RING343	_	RING finger protein, RING-type E3 ubiquitin ligase 343			12	LOC_Os12g16690. 		Os12g0267900	LOC_Os12g16690.1				GO:0008270 - zinc ion binding		
21173	EBR1	OsRFP, RFP, OsEBR1, OsRING398, RING398	ENHANCED BLIGHT AND BLAST RESISTANCE 1	RING finger protein, enhanced blight and blast resistance 1, RING-type E3 ubiquitin ligase 398		ebr1	5	KX196161. a RING-type E3 ligase. GO:0140426: PAMP-triggered immunity signalling pathway.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Reproductive organ - panicle,  Character as QTL - Plant growth activity,  Tolerance and resistance - Lesion mimic	Os05g0279400	LOC_Os05g19970.1				GO:0003676 - nucleic acid binding, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0060548 - negative regulation of cell death, GO:0008270 - zinc ion binding	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000063 - mimic response, TO:0000112 - disease resistance, TO:0000040 - panicle length, TO:0000396 - grain yield, TO:0000605 - hydrogen peroxide content, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000447 - filled grain number	
21177	_	OsDAD1;2, DAD1;2	_				8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0143600 	LOC_Os08g04800.1				GO:0010106 - cellular response to iron ion starvation, GO:0006629 - lipid metabolic process, GO:0009695 - jasmonic acid biosynthetic process, GO:0016787 - hydrolase activity	TO:0000224 - iron sensitivity	
21178	_	OsDAD1;3, DAD1;3	_				8	class III lipase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0653900  	LOC_Os02g43700.1				GO:0006629 - lipid metabolic process, GO:0009695 - jasmonic acid biosynthetic process, GO:0016787 - hydrolase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21179	_	OsDAD1;4, DAD1;4	_				10		 Biochemical character	Os10g0562200  	LOC_Os10g41270.1				GO:0016787 - hydrolase activity, GO:0006629 - lipid metabolic process, GO:0009695 - jasmonic acid biosynthetic process		
21180	MIL2	OsTDL1A, TDL1A, OsMIL2, OsTDL1A/MIL2, OsTDL1a	MICROSPORELESS 2	TPD1-like 1A, MICROSPORELESS2, MICROSPORELESS 2		ostdl1a, mil2	12	Q2QR54. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os12g0472500	LOC_Os12g28750.1				GO:0048658 - tapetal layer development, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009556 - microsporogenesis, GO:0010234 - tapetal cell fate specification, GO:0010480 - microsporocyte differentiation, GO:0048653 - anther development	TO:0000259 - heat tolerance	PO:0009051 - spikelet , PO:0009066 - anther , PO:0001004 - anther development stage , PO:0020003 - plant ovule , PO:0009005 - root 
21181	_	OsNAPL6, NAPL6	_				2	a histone chaperone of the NAP superfamily. EEC73468. B8AEC1, Q69JW2.	 Tolerance and resistance - Stress tolerance	Os02g0576700	LOC_Os02g36710.1				GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0006970 - response to osmotic stress, GO:0006974 - response to DNA damage stimulus	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	
21182	_	OsM1, M1, OsM1a, OsM1b OsM1c	_	single domain MDC protein 1, single MATH domain containing protein 1			1	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os01g56800.1, LOC_Os01g56800.2, LOC_Os01g56800.3.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os01g0775300	LOC_Os01g56800.1, LOC_Os01g56800.2, LOC_Os01g56800.3				GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus	TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
21183	_	OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7	_	single domain MDC protein 2, single MATH domain containing protein 2, ubiquitin-specific processing protease 5-1, Ubiquitin-specific protease 7			1	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP7 in Ma et al. 2019.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0771400	LOC_Os01g56490.1				GO:0009607 - response to biotic stimulus, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance	PO:0009029 - stamen 
21184	_	OsM3, M3, OsM3a	_	single domain MDC protein 3, single MATH domain containing protein 3			4	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os04g18830.1.		Os04g0259300	LOC_Os04g18830.1				GO:0005634 - nucleus		
21185	_	OsM4, M4, OsM4a	_	single domain MDC protein 4, single MATH domain containing protein 4			5	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os05g43280.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os05g0508700	LOC_Os05g43280.1				GO:0009607 - response to biotic stimulus, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000179 - biotic stress trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21186	_	OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13	_	single domain MDC protein 5, single MATH domain containing protein 5, ubiquitin-specific processing protease 5-2, Ubiquitin-specific protease 13			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. OsUBP13 in Ma et al. 2019.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0163800	LOC_Os07g06950.1				GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
21187	_	OsM6, M6, OsM6a	_	single domain MDC protein 6, single MATH domain containing protein 6			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os07g20130.1.		Os07g0297100	LOC_Os07g20130.1				GO:0009507 - chloroplast		
21188	_	OsM7, M7, OsM7a	_	single domain MDC protein 7, single MATH domain containing protein 7			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os10g28130.1.		Os10g0416900	LOC_Os10g28130.1				GO:0005737 - cytoplasm		
21189	_	OsM8, M8, OsM8a	_	single domain MDC protein 8, single MATH domain containing protein 8			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41360.1.		Os11g0631600	LOC_Os11g41360.1				GO:0009507 - chloroplast		
21190	_	OsM9, M9, OsM9a	_	single domain MDC protein 9, single MATH domain containing protein 9			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g27030.1.		Os11g0458600	LOC_Os11g27030.1				GO:0005737 - cytoplasm		
21191	_	OsM10, M10, OsM10a	_	single domain MDC protein 10, single MATH domain containing protein 10			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41230.1.			LOC_Os11g41230				GO:0005739 - mitochondrion		
21192	_	OsM11, M11, OsM11a	_	single domain MDC protein 11, single MATH domain containing protein 11			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41240.1.			LOC_Os11g41240				GO:0009507 - chloroplast		
21193	_	OsM12, M12, OsM12a	_	single domain MDC protein 12, single MATH domain containing protein 12			12	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os12g40520.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os12g0597200	LOC_Os12g40520.1				GO:0009607 - response to biotic stimulus, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21194	_	OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12	_	single domain MDC protein 13, single MATH domain containing protein 13, ubiquitin-specific processing protease 5-4, Ubiquitin-specific protease 12			12	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP12 in Ma et al. 2019.	 Tolerance and resistance,  Biochemical character	Os12g0489100/Os12g0489200	LOC_Os12g30540.1				GO:0009607 - response to biotic stimulus, GO:0005829 - cytosol, GO:0031647 - regulation of protein stability, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000179 - biotic stress trait	
21195	_	OsMB1, MB1	_	MATH-BTB protein 1, MDC protein with a BTB domain 1, MDC protein having BTB domain 1			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20690.1.		Os02g0310500	LOC_Os02g20690.1				GO:0005634 - nucleus		
21196	_	OsMB2, MB2	_	MATH-BTB protein 2, MDC protein with a BTB domain 2, MDC protein having BTB domain 2			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20620.1.		Os02g0309500	LOC_Os02g20620.1				GO:0005634 - nucleus		
21197	_	OsMB3, MB3, OsMBTB2, MBTB2	_	MATH-BTB protein 3, MDC protein with a BTB domain 3, MDC protein having BTB domain 3, M BTB-type E3 ubiquitin ligase 2			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20720.1.		Os02g0311150	LOC_Os02g20720.1				GO:0005737 - cytoplasm		
21198	_	OsMB4, MB4, OsMBTB1, MBTB1	_	MATH-BTB protein 4, MDC protein with a BTB domain 4, MDC protein having BTB domain 4, M BTB-type E3 ubiquitin ligase 1			2	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os02g20590.1.		Os02g0309200	LOC_Os02g20590.1				GO:0009507 - chloroplast		
21199	_	OsMB5, MB5, OsMB5a, OsMB5b, OsMBTB3, MBTB3	_	MATH-BTB protein 5, MDC protein with a BTB domain 5, MDC protein having BTB domain 5, M BTB-type E3 ubiquitin ligase 3			3	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os03g57854.1, LOC_Os03g57854.2.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os03g0792500	LOC_Os03g57854.1, LOC_Os03g57854.2				GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
21200	_	OsMB6, MB6, OsMBTB7, MBTB7	_	MATH-BTB protein 6, MDC protein with a BTB domain 6, MDC protein having BTB domain 6, M BTB-type E3 ubiquitin ligase 7			4	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os04g53410.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os04g0625600	LOC_Os04g53410.1				GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000179 - biotic stress trait	
21201	_	OsMB7, MB7	_	MATH-BTB protein 7, MDC protein with a BTB domain 7, MDC protein having BTB domain 7			4	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os04g35310.1.			LOC_Os04g35310				GO:0009507 - chloroplast		
21202	_	OsMB8, MB8, OsMBTB11, MBTB11	_	MATH-BTB protein 8, MDC protein with a BTB domain 8, MDC protein having BTB domain 8, M BTB-type E3 ubiquitin ligase 11			6	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os06g45730.1.		Os06g0668400	LOC_Os06g45730.1				GO:0009507 - chloroplast		
21203	_	OsMB9, MB9, OsMBTB12, MBTB12	_	MATH-BTB protein 9, MDC protein with a BTB domain 9, MDC protein having BTB domain 9, M BTB-type E3 ubiquitin ligase 12			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os07g01140.1.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0101400	LOC_Os07g01140.1				GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation	TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21204	_	OsMB10, MB10, OsMB10a, OsMB10b, OsMBTB13, MBTB13	_	MATH-BTB protein 10, MDC protein with a BTB domain 10, MDC protein having BTB domain 10, M BTB-type E3 ubiquitin ligase 13			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os07g07270.1, LOC_Os07g07270.2.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os07g0167200	LOC_Os07g07270.1, LOC_Os07g07270.2				GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait	
21205	_	OsMB11, MB11, OsMBTB14, MBTB14	_	MATH-BTB protein 11, MDC protein with a BTB domain 11, MDC protein having BTB domain 11, M BTB-type E3 ubiquitin ligase 14			7	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os07g46160.1.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os07g0655300	LOC_Os07g46160.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009607 - response to biotic stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000179 - biotic stress trait	
21206	_	OsMB12, MB12, OsMBTB27, MBTB27	_	MATH-BTB protein 12, MDC protein with a BTB domain 12, MDC protein having BTB domain 12, M BTB-type E3 ubiquitin ligase 27			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g31430.1.	 Tolerance and resistance - Stress tolerance	Os08g0406600	LOC_Os08g31430.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21207	_	OsMB13, MB13	_	MATH-BTB protein 13, MDC protein with a BTB domain 13, MDC protein having BTB domain 13			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g12960.1.		Os08g0226000	LOC_Os08g12960.1				GO:0005737 - cytoplasm		
21208	_	OsMB14, MB14	_	MATH-BTB protein 14, MDC protein with a BTB domain 14, MDC protein having BTB domain 14			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g31450.1.			LOC_Os08g31450				GO:0005737 - cytoplasm		
21209	_	OsMB15, MB15, OsMBTB24, MBTB24	_	MATH-BTB protein 15, MDC protein with a BTB domain 15, MDC protein having BTB domain 15, M BTB-type E3 ubiquitin ligase 24			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g13180.1.		Os08g0228200	LOC_Os08g13180.1				GO:0009507 - chloroplast		
21210	_	OsMB16, MB16, OsMBTB21, MBTB21	_	MATH-BTB protein 16, MDC protein with a BTB domain 16, MDC protein having BTB domain 16, M BTB-type E3 ubiquitin ligase 21			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g13030.1.		Os08g0226800	LOC_Os08g13030.1				GO:0009507 - chloroplast		
21211	_	OsMB17, MB17	_	MATH-BTB protein 17, MDC protein with a BTB domain 17, MDC protein having BTB domain 17			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g03490.1.		Os08g0128900	LOC_Os08g03490.1				GO:0009507 - chloroplast		
21212	_	OsMB18, MB18, OsMBTB15, MBTB15	_	MATH-BTB protein 18, MDC protein with a BTB domain 18, MDC protein having BTB domain 18, M BTB-type E3 ubiquitin ligase 15			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g03470.1.		Os08g0128700	LOC_Os08g03470.1				GO:0009507 - chloroplast		
21213	_	OsMB19, MB19, OsMBTB20, MBTB20	_	MATH-BTB protein 19, MDC protein with a BTB domain 19, MDC protein having BTB domain 19, M BTB-type E3 ubiquitin ligase 20			8	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os08g13000.1.	 Tolerance and resistance - Stress tolerance	Os08g0226400	LOC_Os08g13000.1				GO:0005737 - cytoplasm, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
21214	_	OsMB20, MB20, OsMB20a, OsMB20b, DLN234, OsDLN234, OsMBTB47, MBTB47	_	MATH-BTB protein 20, MDC protein with a BTB domain 20, MDC protein having BTB domain 20, DLN repressor 234, DLN motif protein 234, M BTB-type E3 ubiquitin ligase 47			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. OsMB20a (cytoplasm), OsMB20b (chloroplast).	 Tolerance and resistance - Stress tolerance	Os10g0427300	LOC_Os10g29180.2, LOC_Os10g29180.1				GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
21215	_	OsMB21, MB21	_	MATH-BTB protein 21, MDC protein with a BTB domain 21, MDC protein having BTB domain 21			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29230.1.			LOC_Os10g29230				GO:0009507 - chloroplast		
21216	_	OsMB22, MB22, OsMBTB51, MBTB51	_	MATH-BTB protein 22, MDC protein with a BTB domain 22, MDC protein having BTB domain 22, M BTB-type E3 ubiquitin ligase 51			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29310.1.	 Tolerance and resistance - Stress tolerance	Os10g0428500	LOC_Os10g29310.1				GO:0009408 - response to heat, GO:0005739 - mitochondrion	TO:0000259 - heat tolerance	
21217	_	OsMB23, MB23, OsMBTB48, MBTB48	_	MATH-BTB protein 23, MDC protein with a BTB domain 23, MDC protein having BTB domain 23, M BTB-type E3 ubiquitin ligase 48			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29220.1.		Os10g0427600	LOC_Os10g29220.1				GO:0009507 - chloroplast		
21218	_	OsMB24, MB24, OsMBTB43, MBTB43	_	MATH-BTB protein 24, MDC protein with a BTB domain 24, MDC protein having BTB domain 24, M BTB-type E3 ubiquitin ligase 43			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29050.1.		Os10g0425900	LOC_Os10g29050.1, LOC_Os10g29050.2				GO:0009507 - chloroplast		
21219	_	OsMB25, MB25	_	MATH-BTB protein 25, MDC protein with a BTB domain 25, MDC protein having BTB domain 25			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29100.1.			LOC_Os10g29100				GO:0009507 - chloroplast		
21220	_	OsMB26, MB26, OsATBPM2, ATBPM2	_	MATH-BTB protein 26, MDC protein with a BTB domain 26, MDC protein having BTB domain 26, BTB-type E3 ubiquitin ligase ATBPM2			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29020.1.		Os10g0425700	LOC_Os10g29020.1				GO:0009507 - chloroplast		
21221	_	OsMB27, MB27	_	MATH-BTB protein 27, MDC protein with a BTB domain 27, MDC protein having BTB domain 27			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29330.1.		Os10g0428900	LOC_Os10g29330.1				GO:0009507 - chloroplast		
21222	_	OsMB28, MB28, OsMBTB39, MBTB39	_	MATH-BTB protein 28, MDC protein with a BTB domain 28, MDC protein having BTB domain 28, M BTB-type E3 ubiquitin ligase 39			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28860.1.		Os10g0424400	LOC_Os10g28860.1				GO:0005737 - cytoplasm		
21223	_	OsMB29, MB29, OsMBTB45, MBTB45	_	MATH-BTB protein 29, MDC protein with a BTB domain 29, MDC protein having BTB domain 29, M BTB-type E3 ubiquitin ligase 45			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29110.1.		Os10g0426600	LOC_Os10g29110.1				GO:0009507 - chloroplast		
21224	_	OsMB30, MB30, OsMBTB52, MBTB52	_	MATH-BTB protein 30, MDC protein with a BTB domain 30, MDC protein having BTB domain 30, M BTB-type E3 ubiquitin ligase 52			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29380.1.		Os10g0429300	LOC_Os10g29380.1				GO:0005737 - cytoplasm		
21225	_	OsMB31, MB31	_	MATH-BTB protein 31, MDC protein with a BTB domain 31, MDC protein having BTB domain 31			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29150.1.			LOC_Os10g29150				GO:0009507 - chloroplast		
21226	_	OsMB32, MB32	_	MATH-BTB protein 32, MDC protein with a BTB domain 32, MDC protein having BTB domain 32			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28990.1.			LOC_Os10g28990				GO:0009507 - chloroplast		
21227	_	OsMB33, MB33, OsMBTB36, MBTB36	_	MATH-BTB protein 33, MDC protein with a BTB domain 33, MDC protein having BTB domain 33, M BTB-type E3 ubiquitin ligase 36			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28790.1.		Os10g0423700	LOC_Os10g28790.1				GO:0005737 - cytoplasm, GO:0016021 - integral to membrane		
21228	_	OsMB34, MB34, OsMBTB56, MBTB56	_	MATH-BTB protein 34, MDC protein with a BTB domain 34, MDC protein having BTB domain 34, M BTB-type E3 ubiquitin ligase 56			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29750.1.		Os10g0434200	LOC_Os10g29750.1				GO:0009507 - chloroplast		
21229	_	OsMB35, MB35	_	MATH-BTB protein 35, MDC protein with a BTB domain 35, MDC protein having BTB domain 35			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29290.1.			LOC_Os10g29290				GO:0009507 - chloroplast		
21230	_	OsMB36, MB36	_	MATH-BTB protein 36, MDC protein with a BTB domain 36, MDC protein having BTB domain 36			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g30360.1.			LOC_Os10g30360				GO:0005634 - nucleus		
21231	_	OsMB37, MB37, OsMBTB59, MBTB59	_	MATH-BTB protein 37, MDC protein with a BTB domain 37, MDC protein having BTB domain 37, M BTB-type E3 ubiquitin ligase 59			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29840.1.		Os10g0435300	LOC_Os10g29840.1				GO:0009507 - chloroplast		
21232	_	OsMB38, MB38, DLN236, OsDLN236, OsMBTB55, MBTB55	_	MATH-BTB protein 38, MDC protein with a BTB domain 38, MDC protein having BTB domain 38, DLN repressor 236, DLN motif protein 236, M BTB-type E3 ubiquitin ligase 55			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein.		Os10g0434000	LOC_Os10g29740.1				GO:0009507 - chloroplast		
21233	_	OsMB39, MB39, OsMBTB57, MBTB57	_	MATH-BTB protein 39, MDC protein with a BTB domain 39, MDC protein having BTB domain 39, M BTB-type E3 ubiquitin ligase 57			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29790.1.		Os10g0434650	LOC_Os10g29790.1				GO:0005737 - cytoplasm		
21234	_	OsMB40, MB40, OsMBTB33, MBTB33	_	MATH-BTB protein 40, MDC protein with a BTB domain 40, MDC protein having BTB domain 40, M BTB-type E3 ubiquitin ligase 33			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28760.1.		Os10g0423300	LOC_Os10g28760.1				GO:0005737 - cytoplasm		
21235	_	OsMB41, MB41, OsMBTB34, MBTB34, OsMBTB35, MBTB35	_	MATH-BTB protein 41, MDC protein with a BTB domain 41, MDC protein having BTB domain 41, M BTB-type E3 ubiquitin ligase 34, M BTB-type E3 ubiquitin ligase 35			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28780.1.		Os10g0423400	LOC_Os10g28770.1, LOC_Os10g28780.1				GO:0005737 - cytoplasm		
21236	_	OsMB42, MB42, OsMBTB53, MBTB53	_	MATH-BTB protein 42, MDC protein with a BTB domain 42, MDC protein having BTB domain 42, M BTB-type E3 ubiquitin ligase 53			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29410.1.		Os10g0429600	LOC_Os10g29410.1				GO:0005737 - cytoplasm		
21237	_	OsMB43, MB43	_	MATH-BTB protein 43, MDC protein with a BTB domain 43, MDC protein having BTB domain 43			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29950.1.		Os10g0436100	LOC_Os10g29950.1				GO:0005737 - cytoplasm		
21238	_	OsMB44, MB44, DLN237, OsDLN237, OsMBTB60, MBTB60	_	MATH-BTB protein 44, MDC protein with a BTB domain 44, MDC protein having BTB domain 44, DLN repressor 237, DLN motif protein 237, M BTB-type E3 ubiquitin ligase 60			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein.		Os10g0435400	LOC_Os10g29850.1				GO:0009507 - chloroplast		
21239	_	OsMB45, MB45, OsMBTB58, MBTB58	_	MATH-BTB protein 45, MDC protein with a BTB domain 45, MDC protein having BTB domain 45, M BTB-type E3 ubiquitin ligase 58			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29810.1.		Os10g0434999	LOC_Os10g29810.1				GO:0009507 - chloroplast		
21240	_	OsMB46, MB46	_	MATH-BTB protein 46, MDC protein with a BTB domain 46, MDC protein having BTB domain 46			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein.	 Tolerance and resistance - Stress tolerance	Os10g0430600	LOC_Os10g29495.1				GO:0009507 - chloroplast, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
21241	_	OsMB47, MB47	_	MATH-BTB protein 47, MDC protein with a BTB domain 47, MDC protein having BTB domain 47			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g29340.1.			LOC_Os10g29340				GO:0009507 - chloroplast		
21242	_	OsMB48, MB48	_	MATH-BTB protein 48, MDC protein with a BTB domain 48, MDC protein having BTB domain 48			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os10g28770.1.		Os10g0423400	LOC_Os10g28770.1, LOC_Os10g28780.1				GO:0005737 - cytoplasm		
21243	_	OsMB49, MB49, DLN233, OsDLN233	_	MATH-BTB protein 49, MDC protein with a BTB domain 49, MDC protein having BTB domain 49, DLN repressor 233, DLN motif protein 233			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein..			LOC_Os10g29120.1				GO:0009507 - chloroplast		
21244	_	OsMB50, MB50	_	MATH-BTB protein 50, MDC protein with a BTB domain 50, MDC protein having BTB domain 50			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g41310.1.			LOC_Os11g41310				GO:0009507 - chloroplast		
21245	_	OsMB51, MB51	_	MATH-BTB protein 51, MDC protein with a BTB domain 51, MDC protein having BTB domain 51			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g41350.1.			LOC_Os11g41350				GO:0005737 - cytoplasm		
21246	_	OsMB52, MB52, OsMBTB64, MBTB64	_	MATH-BTB protein 52, MDC protein with a BTB domain 52, MDC protein having BTB domain 52, M BTB-type E3 ubiquitin ligase 64			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g40680.1.		Os11g0622600	LOC_Os11g40680.1				GO:0005737 - cytoplasm		
21247	_	OsMB53, MB53	_	MATH-BTB protein 53, MDC protein with a BTB domain 53, MDC protein having BTB domain 53			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g40220.1.			LOC_Os11g40220				GO:0009507 - chloroplast		
21248	_	OsMB54, MB54	_	MATH-BTB protein 54, MDC protein with a BTB domain 54, MDC protein having BTB domain 54			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. BTB (Broad-Complex, Tramtrack, and Bric a brac) domain protein. LOC_Os11g45560.1.			LOC_Os11g45560				GO:0009507 - chloroplast		
21249	_	Os2M1, 2M1	_	two MATH domain containing MDC protein 1, MDC protein having two MATH domains 1			10	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family.		Os10g0478450/Os10g0478500	LOC_Os10g33830.1				GO:0005773 - vacuole		
21250	_	Os2M2B1, 2M2B1, OsMBTB69, MBTB69	_	two MATH along with two BTB domains containing MDC protein 1, MDC protein having two MATH domains along with two BTB domains 1, M BTB-type E3 ubiquitin ligase 69			11	MDCP. Meprin And TRAF Homology (MATH) domain containing protein. MATH-domain family. LOC_Os11g41260.1.		Os11g0630700	LOC_Os11g41260.1				GO:0005737 - cytoplasm		
21251	RAE2 	OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2, OgRAE2	REGULATOR OF AWN ELONGATION 2 	"EPIDERMAL PATTERNING FACTOR-LIKE 1, Regulator of Awn Elongation 2, \"GRAIN NUMBER, GRAIN LENGTH AND AWN DEVELOPMENT1\", Grain Length and Awn Development"		rae2, gad1, GLA-VGL, GLA-VA, Osrae2	8	a member of epidermal patterning factor-like protein (EPFL). KX827806 (Oryza rufipogon), KX827807 (Oryza sativa). OgRAE2 (O. glaberrima RAE2).	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0485500 	LOC_Os08g37890.1				GO:0010052 - guard cell differentiation, GO:0005576 - extracellular region	TO:0002759 - grain number, TO:0000162 - seed quality, TO:0000266 - chalky endosperm, TO:0002656 - starch grain shape, TO:0000734 - grain length, TO:0002734 - awn presence, TO:0000072 - awn length	
21252	RAE3		REGULATOR OF AWN ELONGATION  3	Regulator of Awn Elongation 3				RAE3 is a novel locus controlling long awn formation that is responsible for the loss of long awns in O. glaberrima, and this locus is independent of the RAE1/An-1 and RAE2 loci controlling awn formation in O. sativa. (Furuta et al. 2015)	 Reproductive organ - Spikelet, flower, glume, awn							TO:0002734 - awn presence, TO:0000072 - awn length	
21253	FTSH2	OsFtsH2, FtsH2	_				6	Q655S1.	 Biochemical character,  Vegetative organ - Leaf	Os06g0669400	LOC_Os06g45820.4, LOC_Os06g45820.3, LOC_Os06g45820.1, LOC_Os06g45820.2				GO:0009941 - chloroplast envelope, GO:0010027 - thylakoid membrane organization, GO:0010150 - leaf senescence, GO:0010205 - photoinhibition, GO:0010206 - photosystem II repair, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0006508 - proteolysis, GO:0005524 - ATP binding, GO:0004222 - metalloendopeptidase activity, GO:0004176 - ATP-dependent peptidase activity, GO:0008237 - metallopeptidase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009535 - chloroplast thylakoid membrane	TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity	PO:0001054 - 4 leaf senescence stage 
21254	_	PSF	_	premature senescence of flag leaves		pff			 Vegetative organ - Leaf						GO:0009416 - response to light stimulus, GO:0010206 - photosystem II repair, GO:0010150 - leaf senescence, GO:0009738 - abscisic acid mediated signaling	TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000075 - light sensitivity, TO:0000298 - chlorophyll ratio, TO:0000249 - leaf senescence, TO:0000496 - carotenoid content, TO:0002667 - abscisic acid content	PO:0001054 - 4 leaf senescence stage 
21255	FTSH1	OsFtsH1, FtsH1	_				6	Q5Z974.	 Biochemical character	Os06g0725900	LOC_Os06g51029.1, LOC_Os06g51029.2				GO:0009579 - thylakoid, GO:0009507 - chloroplast, GO:0008237 - metallopeptidase activity, GO:0007049 - cell cycle, GO:0006508 - proteolysis, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0051301 - cell division, GO:0004176 - ATP-dependent peptidase activity, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0004222 - metalloendopeptidase activity, GO:0010206 - photosystem II repair, GO:0010205 - photoinhibition		
21256	FTSH3	OsFtsH3, FtsH3	_				1	Q8S2A7.	 Biochemical character	Os01g0842600	LOC_Os01g62500.1				GO:0004176 - ATP-dependent peptidase activity, GO:0005743 - mitochondrial inner membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0004222 - metalloendopeptidase activity, GO:0016021 - integral to membrane, GO:0008053 - mitochondrial fusion, GO:0008237 - metallopeptidase activity, GO:0034982 - mitochondrial protein processing, GO:0042407 - cristae formation, GO:0045041 - protein import into mitochondrial intermembrane space, GO:0005524 - ATP binding, GO:0008270 - zinc ion binding, GO:0006461 - protein complex assembly		
21257	FTSH4	OsFtsH4, FtsH4	_				1	Q8LQJ9.	 Biochemical character	Os01g0574400	LOC_Os01g39250.1				GO:0016020 - membrane, GO:0008237 - metallopeptidase activity, GO:0004222 - metalloendopeptidase activity, GO:0005524 - ATP binding, GO:0004176 - ATP-dependent peptidase activity, GO:0005739 - mitochondrion, GO:0006508 - proteolysis, GO:0046872 - metal ion binding		
21258	FTSH5	OsFtsH5, FtsH5	_				1	Q8LQJ8.	 Biochemical character	Os01g0574500	LOC_Os01g39260.1				GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0005739 - mitochondrion, GO:0006508 - proteolysis, GO:0008237 - metallopeptidase activity, GO:0004222 - metalloendopeptidase activity, GO:0005524 - ATP binding, GO:0004176 - ATP-dependent peptidase activity		
21259	FTSH7	OsFtsH7, FtsH7	_				2	Q6H6R9.	 Biochemical character	Os02g0649700	LOC_Os02g43350.1				GO:0006508 - proteolysis, GO:0004222 - metalloendopeptidase activity, GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0008237 - metallopeptidase activity, GO:0016021 - integral to membrane, GO:0009941 - chloroplast envelope, GO:0005739 - mitochondrion, GO:0004176 - ATP-dependent peptidase activity, GO:0009535 - chloroplast thylakoid membrane		
21260	FTSH8	OsFtsH8, FtsH8	_				5	Q0DHL4.	 Biochemical character	Os05g0458400	LOC_Os05g38400.1, LOC_Os05g38400.2, LOC_Os05g38400.3				GO:0009535 - chloroplast thylakoid membrane, GO:0004176 - ATP-dependent peptidase activity, GO:0005743 - mitochondrial inner membrane, GO:0004222 - metalloendopeptidase activity, GO:0045041 - protein import into mitochondrial intermembrane space, GO:0042407 - cristae formation, GO:0034982 - mitochondrial protein processing, GO:0005524 - ATP binding, GO:0006461 - protein complex assembly, GO:0008053 - mitochondrial fusion, GO:0008237 - metallopeptidase activity, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane		
21261	FTSH9	OsFtsH9, FtsH9, OsFtsH2, FtsH2	_	Filamentation temperature-sensitive H2		osftsh2, osftsh2-1, osftsh2-2, osftsh2-3	1	A2ZVG7. OsFtsH2 in Wu et al. 2021.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0618800	LOC_Os01g43150.1, LOC_Os01g43150.2, LOC_Os01g43150.3				GO:0005739 - mitochondrion, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0006508 - proteolysis, GO:0010304 - PSII associated light-harvesting complex II catabolic process, GO:0004176 - ATP-dependent peptidase activity, GO:0004222 - metalloendopeptidase activity, GO:0005524 - ATP binding, GO:0008237 - metallopeptidase activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009941 - chloroplast envelope, GO:0031966 - mitochondrial membrane, GO:0009409 - response to cold	TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000316 - photosynthetic ability, TO:0000207 - plant height, TO:0001015 - photosynthetic rate, TO:0000522 - stomatal conductance, TO:0001018 - transpiration rate, TO:0000605 - hydrogen peroxide content, TO:0000303 - cold tolerance	PO:0025034 - leaf 
21262	_	Ung	_	Uracil-N-Glycosylase			4		 Biochemical character	Os04g0673400	LOC_Os04g57730.1				GO:0006284 - base-excision repair, GO:0004844 - uracil DNA N-glycosylase activity, GO:0005634 - nucleus, GO:0005739 - mitochondrion		
21263	OGG	Ogg, OsOGG	8-OXOGUANINE DNA GLYCOSYLASE	8-oxoguanine DNA glycosylase	8-OXOGUANINE DNA GLYCOSYLASE		2	the XIK1 homolog.	 Biochemical character	Os02g0552600	LOC_Os02g34750.1, LOC_Os02g34750.2				GO:0005634 - nucleus, GO:0006289 - nucleotide-excision repair, GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity, GO:0003684 - damaged DNA binding, GO:0019104 - DNA N-glycosylase activity, GO:0006284 - base-excision repair		
21264	_	XPC	_				8	GO:0071942: XPC complex.	 Biochemical character	Os08g0427500	LOC_Os08g33082.1				GO:0006298 - mismatch repair, GO:0000111 - nucleotide-excision repair factor 2 complex, GO:0003684 - damaged DNA binding, GO:0003697 - single-stranded DNA binding, GO:0005737 - cytoplasm, GO:0006289 - nucleotide-excision repair		
21265	_	XPF (Rad1), XPF, Rad1	_				3	GO:1901255: nucleotide-excision repair involved in interstrand cross-link repair.	 Biochemical character	Os03g0100400	LOC_Os03g01100.1				GO:0000110 - nucleotide-excision repair factor 1 complex, GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion, GO:0003697 - single-stranded DNA binding, GO:0003684 - damaged DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0000014 - single-stranded DNA specific endodeoxyribonuclease activity		
21266	_	ERCC1 (Rad10), ERCC1, Rad10	_				10		 Biochemical character	Os10g0518900	LOC_Os10g37490.1				GO:0005634 - nucleus, GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion, GO:0006289 - nucleotide-excision repair, GO:0004519 - endonuclease activity, GO:0006281 - DNA repair, GO:0003684 - damaged DNA binding		
21267	_	Rad23	_	RAD23 DNA repair protein			2		 Biochemical character	Os02g0179300	LOC_Os02g08300.1, LOC_Os02g08300.2				GO:0005634 - nucleus, GO:0003684 - damaged DNA binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0006289 - nucleotide-excision repair		
21268	_	Rad23	_				6		 Biochemical character	Os06g0264300	LOC_Os06g15360.1, LOC_Os06g15360.2, LOC_Os06g15360.3, LOC_Os06g15360.4				GO:0005634 - nucleus, GO:0006289 - nucleotide-excision repair, GO:0003684 - damaged DNA binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
21269	CHR713	CSB, OsCHR713	CHROMATIN REMODELING FACTOR 713	chromatin remodeling factor 713	CHROMATIN REMODELING FACTOR 713		5	GO:0140658: ATP-dependent chromatin remodeler activity.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0247900	LOC_Os05g15890.1, LOC_Os05g15890.2, LOC_Os05g15890.3				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0006283 - transcription-coupled nucleotide-excision repair, GO:0009414 - response to water deprivation, GO:0006289 - nucleotide-excision repair	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
21271	_	XAB2	_				7	GO:0000974: Prp19 complex.	 Biochemical character	Os07g0644300	LOC_Os07g44970.1				GO:0071012 - catalytic step 1 spliceosome, GO:0071013 - catalytic step 2 spliceosome, GO:0071014 - post-mRNA release spliceosomal complex, GO:0071010 - prespliceosome, GO:0000349 - generation of catalytic spliceosome for first transesterification step, GO:0006289 - nucleotide-excision repair, GO:0006283 - transcription-coupled nucleotide-excision repair		
21272	_	MMS19	_				7		 Biochemical character	Os07g0177100	LOC_Os07g08050.1				GO:0006289 - nucleotide-excision repair, GO:0006283 - transcription-coupled nucleotide-excision repair		
21273	MTE	TagI, OsMTE, OsMTF, MTF	RNA METHYLTRANSFERASE E	RNA methyltransferase E	RNA METHYLTRANSFERASE E		3	N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex. GO:0036396: RNA N6-methyladenosine methyltransferase complex. OsMTE (LOC_Os03g10224) and OsMTF (LOC_Os03g10220) in Hasan et al. 2024.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0198900	LOC_Os03g10220.1, LOC_Os03g10224.1				GO:0050832 - defense response to fungus, GO:0006284 - base-excision repair, GO:0016798 - hydrolase activity, acting on glycosyl bonds, GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, GO:0003676 - nucleic acid binding, GO:0008168 - methyltransferase activity, GO:0009611 - response to wounding, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium	TO:0000315 - bacterial disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance, TO:0000303 - cold tolerance	
21274	MPG	TagI, OsMPG	N-METHYLPURINE DNA GLYCOSYLASE	N-methylpurine DNA glycosylase	N-METHYLPURINE DNA GLYCOSYLASE		2	a rice endogenous hypoxanthine excision protein. GO:0052822: DNA-3-methylguanine glycosylase activity. GO:0052821: DNA-7-methyladenine glycosylase activity.	 Biochemical character	Os02g0774500	LOC_Os02g53430.1				GO:0006284 - base-excision repair, GO:0003677 - DNA binding, GO:0003905 - alkylbase DNA N-glycosylase activity, GO:0008725 - DNA-3-methyladenine glycosylase I activity, GO:0043916 - DNA-7-methylguanine glycosylase activity		
21275	_	TagI	_				8		 Biochemical character	Os08g0489300	LOC_Os08g38170.1, LOC_Os08g38170.3, LOC_Os08g38170.4, LOC_Os08g38170.5				GO:0008725 - DNA-3-methyladenine glycosylase I activity, GO:0006284 - base-excision repair, GO:0016021 - integral to membrane		
21276	_	TagI	_				4		 Biochemical character	Os04g0501200	LOC_Os04g42290.1				GO:0008725 - DNA-3-methyladenine glycosylase I activity, GO:0006284 - base-excision repair		
21277	_	TagI	_				1		 Biochemical character	Os01g0799500	LOC_Os01g58550.1, LOC_Os01g58550.2				GO:0006284 - base-excision repair, GO:0008725 - DNA-3-methyladenine glycosylase I activity		
21278	_	MutM	_				6		 Biochemical character	Os06g0643600	LOC_Os06g43610.1				GO:0006284 - base-excision repair, GO:0003684 - damaged DNA binding, GO:0008534 - oxidized purine base lesion DNA N-glycosylase activity, GO:0008270 - zinc ion binding, GO:0006289 - nucleotide-excision repair		
21279	_	AlkA	_				5		 Biochemical character	Os05g0567500	LOC_Os05g49250.1, LOC_Os05g49250.2				GO:0006284 - base-excision repair, GO:0005634 - nucleus, GO:0019104 - DNA N-glycosylase activity		
21280	_		_	AP endonuclease			1		 Biochemical character	Os01g0801000	LOC_Os01g58680.1				GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity, GO:0006284 - base-excision repair, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0008311 - double-stranded DNA specific 3'-5' exodeoxyribonuclease activity, GO:0046872 - metal ion binding		
21281	_		_	AP endonuclease			1		 Biochemical character	Os01g0801100	LOC_Os01g58690.1, LOC_Os01g58690.2, LOC_Os01g58690.3				GO:0006284 - base-excision repair, GO:0046872 - metal ion binding, GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity, GO:0008311 - double-stranded DNA specific 3'-5' exodeoxyribonuclease activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
21282	_		_	AP endonuclease 2			9		 Biochemical character	Os09g0536000	LOC_Os09g36530.1, LOC_Os09g36530.2				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity, GO:0003677 - DNA binding, GO:0008311 - double-stranded DNA specific 3'-5' exodeoxyribonuclease activity, GO:0006284 - base-excision repair		
21283	_		_	MutS homologue			4		 Biochemical character	Os04g0507000	LOC_Os04g42784.1				GO:0032300 - mismatch repair complex, GO:0005524 - ATP binding, GO:0007131 - reciprocal meiotic recombination, GO:0030983 - mismatched DNA binding, GO:0000710 - meiotic mismatch repair, GO:0000228 - nuclear chromosome, GO:0003684 - damaged DNA binding		
21284	_		_	MutS homologue			10		 Biochemical character	Os10g0509000	LOC_Os10g36530.1, LOC_Os10g36530.2				GO:0030983 - mismatched DNA binding, GO:0006298 - mismatch repair, GO:0005524 - ATP binding		
21285	RECA3	RecA, OsRECA3	RECA HOMOLOG 3	RecA homolog 3	RECA HOMOLOG 3		1	similar to E. coli RecA.	 Biochemical character	Os01g0901200	LOC_Os01g67510.1				GO:0006312 - mitotic recombination, GO:0000730 - DNA recombinase assembly, GO:0003697 - single-stranded DNA binding, GO:0000150 - recombinase activity, GO:0000400 - four-way junction DNA binding, GO:0003690 - double-stranded DNA binding, GO:0008094 - DNA-dependent ATPase activity, GO:0005524 - ATP binding, GO:0010212 - response to ionizing radiation, GO:0042148 - strand invasion, GO:0000724 - double-strand break repair via homologous recombination		
21286	_	RecA	_				3	similar to E. coli RecA.	 Biochemical character	Os03g0639700	LOC_Os03g43850.1				GO:0005524 - ATP binding, GO:0006312 - mitotic recombination, GO:0008094 - DNA-dependent ATPase activity, GO:0010212 - response to ionizing radiation, GO:0042148 - strand invasion, GO:0000730 - DNA recombinase assembly, GO:0000400 - four-way junction DNA binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0000150 - recombinase activity, GO:0003697 - single-stranded DNA binding, GO:0003690 - double-stranded DNA binding		
21287	NBS1	OsNBS1, OsNbs1	NIJMEGEN BREAKAGE SYNDROME 1	Nijmegen breakage syndrome 1			10	Q7XD82. GO:0071479: cellular response to ionizing radiation.	 Biochemical character	Os10g0487300	LOC_Os10g34580.1, LOC_Os10g34580.2				GO:0000724 - double-strand break repair via homologous recombination, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0016605 - PML body, GO:0000784 - nuclear chromosome, telomeric region, GO:0007095 - mitotic cell cycle G2/M transition DNA damage checkpoint, GO:0032508 - DNA duplex unwinding, GO:0016233 - telomere capping, GO:0042770 - DNA damage response, signal transduction, GO:0007131 - reciprocal meiotic recombination, GO:0006974 - response to DNA damage stimulus, GO:0003684 - damaged DNA binding, GO:0006312 - mitotic recombination, GO:0030870 - Mre11 complex		
21288	_	XPV	_	DNA polymerase eta			1		 Biochemical character	Os01g0757800	LOC_Os01g55300.1, LOC_Os01g55300.2, LOC_Os01g55300.3, LOC_Os01g55300.4, LOC_Os01g55300.5				GO:0006281 - DNA repair, GO:0003684 - damaged DNA binding, GO:0034061 - DNA polymerase activity, GO:0019985 - bypass DNA synthesis		
21289	_		_	DNA polymerase kappa			3		 Biochemical character	Os03g0616300	LOC_Os03g42010.1, LOC_Os03g42010.2				GO:0019985 - bypass DNA synthesis, GO:0003684 - damaged DNA binding, GO:0006281 - DNA repair, GO:0003887 - DNA-directed DNA polymerase activity		
21290	NTP10	OsNTP10	NUCLEOTIDYL TRANSFERASE PROTEIN 10	DNA polymerase sigma, nucleotidyl transferase protein 10	NUCLEOTIDYL TRANSFERASE PROTEIN 10		10	LOC_Os10g11034.1	 Biochemical character	Os10g0188300	LOC_Os10g11034.1				GO:0034061 - DNA polymerase activity, GO:0007062 - sister chromatid cohesion, GO:0016779 - nucleotidyltransferase activity		
21291	_		_	Pol I-like			4	family A DNA polymerase.	 Biochemical character	Os04g0637400	LOC_Os04g54500.1				GO:0006261 - DNA-dependent DNA replication, GO:0003887 - DNA-directed DNA polymerase activity, GO:0003677 - DNA binding, GO:0005737 - cytoplasm, GO:0008409 - 5'-3' exonuclease activity		
21292	_	Rev1	_				6	deoxyribonucleotidyl transferase.	 Biochemical character	Os06g0691000	LOC_Os06g47580.1, LOC_Os06g47580.2, LOC_Os06g47580.3				GO:0005634 - nucleus, GO:0034061 - DNA polymerase activity, GO:0003684 - damaged DNA binding, GO:0016779 - nucleotidyltransferase activity, GO:0042276 - error-prone postreplication DNA repair		
21293	RFC1	OsRFC1	REPLICATION FACTOR C SUBUNIT 1	replication factor C subunit 1, replication factor C1	REPLICATION FACTOR C SUBUNIT 1		11	accessory protein of DNA polymerases. Q2R2B4.	 Biochemical character	Os11g0572100	LOC_Os11g36390.1				GO:0003689 - DNA clamp loader activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0005663 - DNA replication factor C complex, GO:0006260 - DNA replication, GO:0006281 - DNA repair		
21294	RFC2	OsRFC2	REPLICATION FACTOR C SUBUNIT 2	replication factor C subunit 2, replication factor C2	REPLICATION FACTOR C SUBUNIT 2		12	accessory protein of DNA polymerases. Q9FXM3.	 Biochemical character	Os12g0176500	LOC_Os12g07720.1				GO:0003677 - DNA binding, GO:0005663 - DNA replication factor C complex, GO:0005737 - cytoplasm, GO:0006261 - DNA-dependent DNA replication, GO:0005634 - nucleus, GO:0005524 - ATP binding		
21295	RFC4	OsRFC4	REPLICATION FACTOR C SUBUNIT 4	replication factor C subunit 4, replication factor C4	REPLICATION FACTOR C SUBUNIT 4		4	accessory protein of DNA polymerases. Q7XRX1.	 Biochemical character	Os04g0569000	LOC_Os04g48060.1				GO:0006261 - DNA-dependent DNA replication, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005663 - DNA replication factor C complex, GO:0003677 - DNA binding		
21296	RFC5	OsRFC5	REPLICATION FACTOR C SUBUNIT 5	replication factor C subunit 5, replication factor C5	REPLICATION FACTOR C SUBUNIT 5		3	accessory protein of DNA polymerases. Q852K3.	 Biochemical character	Os03g0792600	LOC_Os03g57870.1				GO:0005663 - DNA replication factor C complex, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0006261 - DNA-dependent DNA replication		
21297	UEV1C	MMS2, OsUEV1C	UBC-E2 VARIANT 1C	Ubc-E2 variant 1C, Ubc enzyme variant protein 1C, ubiquitin-conjugating enzyme variant protein 1C	UBC-E2 VARIANT 1C		9	Rad8 pathway. GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0297100	LOC_Os09g12570.1				GO:0070534 - protein K63-linked ubiquitination, GO:0006974 - response to DNA damage stimulus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity, GO:0006301 - postreplication repair, GO:0031625 - ubiquitin protein ligase binding		
21298	_		_	RecQ homologue, RecQ-like helices, RecQ helicase			7	GO:0071480: cellular response to gamma radiation.	 Biochemical character	Os07g0681600	LOC_Os07g48360.1				GO:0000722 - telomere maintenance via recombination, GO:0000731 - DNA synthesis during DNA repair, GO:0005654 - nucleoplasm, GO:0005737 - cytoplasm, GO:0006284 - base-excision repair, GO:0006302 - double-strand break repair, GO:0007569 - cell aging, GO:0009378 - four-way junction helicase activity, GO:0031297 - replication fork processing, GO:0032508 - DNA duplex unwinding, GO:0043140 - ATP-dependent 3'-5' DNA helicase activity, GO:0005524 - ATP binding, GO:0003677 - DNA binding, GO:0000784 - nuclear chromosome, telomeric region		
21299	_		_	RecQ homologue, RecQ-like helices, RecQ helicase			5		 Biochemical character	Os05g0150600	LOC_Os05g05810.1, LOC_Os05g05810.2				GO:0003677 - DNA binding, GO:0005524 - ATP binding, GO:0000724 - double-strand break repair via homologous recombination, GO:0005694 - chromosome, GO:0005634 - nucleus, GO:0009378 - four-way junction helicase activity, GO:0005737 - cytoplasm, GO:0043140 - ATP-dependent 3'-5' DNA helicase activity		
21300	_		_	WRN-like exonuclease, RecQ helices, 3'-5' exonuclease domain-containing protein			1	up-regulated after fertilization (Abiko et al. 2013).	 Biochemical character	Os01g0300000	LOC_Os01g19430.1				GO:0003676 - nucleic acid binding, GO:0009790 - embryonic development, GO:0008408 - 3'-5' exonuclease activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
21301	TOP1	OsTOP1	TOPOISOMERASE 1	topoisomerase I, type I topoisomerase, topoisomerase 1	TOPOISOMERASE 1		8		 Biochemical character,  Vegetative organ - Root	Os08g0154600	LOC_Os08g05840.1				GO:0010928 - regulation of auxin mediated signaling pathway, GO:0007059 - chromosome segregation, GO:0048364 - root development, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003917 - DNA topoisomerase type I activity, GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity, GO:0006338 - chromatin remodeling, GO:0048527 - lateral root development, GO:0031298 - replication fork protection complex, GO:0080022 - primary root development, GO:0009630 - gravitropism, GO:0006265 - DNA topological change, GO:0006260 - DNA replication	TO:0000656 - root development trait, TO:0001013 - lateral root number, TO:0001012 - lateral root length	PO:0009005 - root , PO:0007520 - root development stage 
21302	TOP2	OsTOP2	TOPOISOMERASE 2	topoisomerase II, type II topoisomerase, topoisomerase 2	TOPOISOMERASE 2		2	GO:0044774: mitotic DNA integrity checkpoint.	 Biochemical character	Os02g0699700	LOC_Os02g47150.1				GO:0000819 - sister chromatid segregation, GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity, GO:0005634 - nucleus, GO:0006265 - DNA topological change, GO:0005524 - ATP binding, GO:0006268 - DNA unwinding during replication, GO:0006312 - mitotic recombination, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0003677 - DNA binding, GO:0009330 - DNA topoisomerase complex (ATP-hydrolyzing)		
21303	_	XRCC4	_				3		 Biochemical character	Os03g0740800	LOC_Os03g53000.1				GO:0005634 - nucleus, GO:0006302 - double-strand break repair, GO:0032807 - DNA ligase IV complex, GO:0006310 - DNA recombination, GO:0003677 - DNA binding		
21304	_		_	DNA ligase			1		 Biochemical character	Os01g0685500	LOC_Os01g49180.1				GO:0005524 - ATP binding, GO:0006273 - lagging strand elongation, GO:0051103 - DNA ligation during DNA repair, GO:0003910 - DNA ligase (ATP) activity, GO:0006310 - DNA recombination		
21305	_	OsRAD1, RAD1	_	Rad1 (S. pombe) homologue, Radiation sensitive 1		Osrad1, Osrad1-1, Osrad1-2	6	PCNA-like damage sensor. LOC_Os06g04190. endonuclease homolog. 9-1-1 complex member. GO:2000781: positive regulation of double-strand break repair. GO:2001033: negative regulation of double-strand break repair via nonhomologous end joining. GO:2000003: positive regulation of DNA damage checkpoint. GO:1990918: double-strand break repair involved in meiotic recombination.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os06g0132600	LOC_Os06g04190.1, LOC_Os06g04190.2				GO:0030896 - checkpoint clamp complex, GO:0003684 - damaged DNA binding, GO:0000077 - DNA damage checkpoint, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0006302 - double-strand break repair, GO:0006281 - DNA repair		
21306	PARP1	OsPARP1, PARP, OsPARP1.1, OsPARP1.2	POLY(ADP-RIBOSE) POLYMERASE 1	poly(ADP-ribose) polymerase 1, Poly ADP-ribose polymerase-1	POLY(ADP-RIBOSE) POLYMERASE 1	osparp1	7	Q7EYV7. PO:0030123: panicle inflorescence.	 Character as QTL - Germination,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os07g0413700	LOC_Os07g23110.1				GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0051321 - meiotic cell cycle, GO:0048229 - gametophyte development, GO:0006260 - DNA replication, GO:0003910 - DNA ligase (ATP) activity, GO:0051446 - positive regulation of meiotic cell cycle, GO:0006281 - DNA repair, GO:0009908 - flower development, GO:0070213 - protein amino acid auto-ADP-ribosylation, GO:0010029 - regulation of seed germination, GO:0009553 - embryo sac development, GO:0009555 - pollen development, GO:0051287 - NAD or NADH binding, GO:0008270 - zinc ion binding, GO:0051103 - DNA ligation during DNA repair, GO:0006273 - lagging strand elongation, GO:0006471 - protein amino acid ADP-ribosylation, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0006284 - base-excision repair, GO:0003677 - DNA binding, GO:0006974 - response to DNA damage stimulus	TO:0000396 - grain yield, TO:0000622 - flower development trait, TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000455 - seed set percent	PO:0028003 - gametophyte development stage , PO:0009029 - stamen , PO:0004705 - stamen primordium , PO:0025281 - pollen , PO:0009005 - root , PO:0025034 - leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0025477 - floral organ primordium , PO:0009030 - carpel , PO:0007615 - flower development stage , PO:0001009 - D pollen mother cell meiosis stage 
21307	_	RecA	_				11	similar to E. coli RecA.	 Biochemical character	Os11g0302700	LOC_Os11g19720.1				GO:0042148 - strand invasion, GO:0000724 - double-strand break repair via homologous recombination, GO:0005524 - ATP binding, GO:0008094 - DNA-dependent ATPase activity, GO:0003690 - double-stranded DNA binding, GO:0000400 - four-way junction DNA binding, GO:0000150 - recombinase activity, GO:0003697 - single-stranded DNA binding, GO:0000730 - DNA recombinase assembly, GO:0006312 - mitotic recombination, GO:0010212 - response to ionizing radiation		
21308	_	RecG	_				2	similar to E. coli RecG.	 Biochemical character	Os02g0710800	LOC_Os02g48100.1				GO:0003676 - nucleic acid binding, GO:0010501 - RNA secondary structure unwinding, GO:0000724 - double-strand break repair via homologous recombination, GO:0005524 - ATP binding, GO:0004004 - ATP-dependent RNA helicase activity		
21309	CHR742	OsCHR742, OsCLSY4, CLSY4, OsFEM2, FEM2	CHROMATIN REMODELING FACTOR 742	Rad54-like, chromatin remodeling factor 742, CLASSY 4, CLASSY-family chromatin remodeler 4, five elements mountain 2	CHROMATIN REMODELING FACTOR 742		5	GO:0140658: ATP-dependent chromatin remodeler activity. GO:0080188: gene silencing by RNA-directed DNA methylation.	 Seed - Morphological traits - Endosperm,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0392400	LOC_Os05g32610.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009960 - endosperm development, GO:0048316 - seed development, GO:0000724 - double-strand break repair via homologous recombination	TO:0000653 - seed development trait, TO:0000074 - blast disease, TO:0006001 - salt tolerance	PO:0007633 - endosperm development stage , PO:0001170 - seed development stage , PO:0009089 - endosperm 
21310	_	TOP3, TOP3alpha	_	topoisomerase 3, Topoisomerase 3alpha			3	C7J0A2	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Biochemical character	Os03g0165000	LOC_Os03g06900.1				GO:0006265 - DNA topological change, GO:0000724 - double-strand break repair via homologous recombination, GO:0003677 - DNA binding, GO:0003917 - DNA topoisomerase type I activity, GO:0005694 - chromosome, GO:0008270 - zinc ion binding, GO:0010520 - regulation of reciprocal meiotic recombination		
21311	_	TOP3	_	topoisomerase 3			9	Q0J0S6.	 Biochemical character	Os09g0500600	LOC_Os09g32450.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0003917 - DNA topoisomerase type I activity, GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0006265 - DNA topological change		
21312	TA1	SSB, OsmtSSB1, mtSSB1, MTSSB1, OsTA1	THICK ALEURONE 1	mitochondrion-targeted single-stranded DNA-binding protein 1	MITOCHONDRION-TARGETED SINGLE-STRANDED DNA-BINDING PROTEIN 1	ta1	5		 Seed - Morphological traits,  Biochemical character,  Seed - Physiological traits - Storage substances	Os05g0509700	LOC_Os05g43440.1, LOC_Os05g43440.2				GO:0006260 - DNA replication, GO:0006091 - generation of precursor metabolites and energy, GO:0001709 - cell fate determination, GO:0000724 - double-strand break repair via homologous recombination, GO:0003697 - single-stranded DNA binding	TO:0000604 - fat and essential oil content, TO:0002653 - endosperm storage protein content, TO:0002642 - dietary fiber related trait	PO:0001099 - formation of aleurone and starchy layers stage , PO:0005360 - aleurone layer , PO:0009009 - plant embryo 
21313	_	SSB	_				1		 Biochemical character	Os01g0642900	LOC_Os01g45530.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0006260 - DNA replication, GO:0003697 - single-stranded DNA binding		
21314	_	EME1	_				4	Q0J9J6.	 Biochemical character	Os04g0648700	LOC_Os04g55500.1				GO:0009644 - response to high light intensity, GO:0005634 - nucleus, GO:0009411 - response to UV, GO:0000724 - double-strand break repair via homologous recombination, GO:0003677 - DNA binding, GO:0004519 - endonuclease activity, GO:0046872 - metal ion binding, GO:0051301 - cell division, GO:0006310 - DNA recombination, GO:0006281 - DNA repair, GO:0051321 - meiotic cell cycle, GO:0007067 - mitosis, GO:0010332 - response to gamma radiation		
21315	MFS1	MND1, OsMND1, OsMFS1	MALE AND FEMALE STERILITY 1	male and female sterility 1, meiotic nuclear division protein 1	MEIOTIC NUCLEAR DIVISION PROTEIN 1	Osmfs1, Osmfs1-1, Osmfs1-2	9	a rice homolog of MND1. GO:1903046: meiotic cell cycle process.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os09g0280600	LOC_Os09g10850.1				GO:0006302 - double-strand break repair, GO:0048232 - male gamete generation, GO:0048653 - anther development, GO:0060542 - regulation of strand invasion, GO:0009553 - embryo sac development, GO:0009555 - pollen development, GO:0000724 - double-strand break repair via homologous recombination, GO:0005634 - nucleus	TO:0000485 - sterility related trait, TO:0000729 - meiotic cell cycle trait, TO:0000455 - seed set percent, TO:0000218 - pollen abortion type, TO:0000437 - male sterility, TO:0000416 - embryosac abortion, TO:0000358 - female sterility	PO:0007616 - flowering stage , PO:0001004 - anther development stage 
21316	_	BARD1	_				5		 Biochemical character	Os05g0486600	LOC_Os05g40810.1				GO:0000724 - double-strand break repair via homologous recombination, GO:0006281 - DNA repair		
21317	PARP2A	OsPARP2A, OsPARP2, PARP2	POLY(ADP-RIBOSE) POLYMERASE 2A	poly(ADP-ribose) polymerase 2A, Poly ADP-ribose polymerase-2A, Poly ADP-ribose polymerase-2	POLY(ADP-RIBOSE) POLYMERASE 2A		1	Q5Z8Q9.	 Biochemical character	Os01g0351200	LOC_Os01g24940.1				GO:0003950 - NAD+ ADP-ribosyltransferase activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0051103 - DNA ligation during DNA repair, GO:0006471 - protein amino acid ADP-ribosylation, GO:0005737 - cytoplasm, GO:0006273 - lagging strand elongation, GO:0003910 - DNA ligase (ATP) activity		
21318	_	PARP2B	_	poly(ADP-ribose) polymerase 2B			1	Q0JMY1.	 Biochemical character	Os01g0351100	LOC_Os01g24920.1				GO:0005737 - cytoplasm, GO:0006273 - lagging strand elongation, GO:0051103 - DNA ligation during DNA repair, GO:0006471 - protein amino acid ADP-ribosylation, GO:0005634 - nucleus, GO:0003910 - DNA ligase (ATP) activity, GO:0003950 - NAD+ ADP-ribosyltransferase activity		
21319	WSL3	OspTAC3, pTAC3, OsPAP1, PAP1	WHITE STRIPE LEAF 3	white stripe leaf 3, plastid transcriptionally active chromosome protein 3, plastid TAC protein 3, PEP-associated protein 1, plastid-encoded plastid polymerase-associated protein 1		wsl3	10	LOC_Os10g32540. a componant of the plastid-encoded plastid RNA polymerase. an essential peripheral subunit of PEP complex, OsPAP1/OspTAC3. a SAP (SAF-A/B, Acinus and PIAS) domain protein. TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll	Os10g0462800	LOC_Os10g32540.1				GO:0009507 - chloroplast	TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content	
21321	WSL2		WHITE STRIPE LEAF 2	white stripe leaf 2		wsl2		(Jia Lyu unpublished)	 Coloration - Chlorophyll							TO:0000326 - leaf color	
21322	MYB1R1 	OsMYB1R1, 1R-MYB1	MYB-RELATED TRANSCRIPTION FACTOR 1	MYB-related transcription factor 1, MYB-related 1, single MYB-like domain protein 1	MYB-RELATED TRANSCRIPTION FACTOR 1		1	GO:0080186: developmental vegetative growth.	 Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Other	Os01g0192300	LOC_Os01g09640.1				GO:0006351 - transcription, DNA-dependent, GO:0007623 - circadian rhythm, GO:2000028 - regulation of photoperiodism, flowering, GO:0005634 - nucleus, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0035066 - positive regulation of histone acetylation, GO:0016573 - histone acetylation, GO:0006338 - chromatin remodeling, GO:0008270 - zinc ion binding, GO:0003700 - transcription factor activity, GO:0003713 - transcription coactivator activity, GO:0003677 - DNA binding, GO:0003682 - chromatin binding	TO:0002616 - flowering time, TO:0006021 - vegetative to reproductive phase transition trait, TO:0000461 - basic vegetative phase, TO:0000396 - grain yield	
21323	TCD5	OsTCD5, TSV, OsTSV, CSV1, OsCSV1	THERMO-SENSITIVE CHLOROPLAST DEVELOPMENT 5	thermo-sensitive chloroplast development 5, temperature-sensitive virescent, cold sensitive virescent1		tcd5, tsv, csv1	5	LOC_Os05g34040. GO:0071949: FAD binding. a plastid-targeted monooxygenase family protein. Arabidopsis TCD5 orthologue: At4G30720. TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os05g0411200	LOC_Os05g34040.2, LOC_Os05g34040.1				GO:0016491 - oxidoreductase activity, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization, GO:0009536 - plastid, GO:0009409 - response to cold, GO:0007623 - circadian rhythm, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0048366 - leaf development	TO:0000069 - variegated leaf, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000655 - leaf development trait, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content	PO:0005426 - chlorenchyma , PO:0001050 - leaf development stage , PO:0025034 - leaf 
21324	_	OsFLU1, FLU1	_	fluorescent 1			1	LOC_Os01g32730. a negative regulator fluorescent (FLU).	 Coloration - Chlorophyll	Os01g0510600	LOC_Os01g32730.1, LOC_Os01g32730.2				GO:0015995 - chlorophyll biosynthetic process		
21325	LCAA	OsLCAA, YGL19, OsYGL19	LOW CHLOROPHYLL ACCUMULATION A	low chlorophyll accumulation A, Yellow-Green Leaf 19		ygl19	3	GO:1901463: regulation of tetrapyrrole biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence. GO:0062098: regulation of programmed necrotic cell death.	 Vegetative organ - Culm,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os03g0331600	LOC_Os03g21370.1				GO:0015995 - chlorophyll biosynthetic process, GO:0033014 - tetrapyrrole biosynthetic process, GO:0009507 - chloroplast, GO:0012501 - programmed cell death, GO:0002679 - respiratory burst during defense response, GO:0010109 - regulation of photosynthesis	TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content, TO:0001027 - net photosynthetic rate, TO:0000298 - chlorophyll ratio, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000440 - grain number per plant	PO:0020103 - flag leaf , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009047 - stem 
21326	_	OsRAD9, RAD9	_	Radiation sensitive 9				LOC_Os04g44620. a member of the RAD9-RAD1-HUS1 (9-1-1) complex. GO:2000781: positive regulation of double-strand break repair. GO:2000003: positive regulation of DNA damage checkpoint.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis						GO:0000077 - DNA damage checkpoint, GO:0006302 - double-strand break repair		
21327	DPE1	OsDPE1, OsDpe1, Dpe1	DISPROPORTIONATING ENZYME 1	disproportionating enzyme 1	DISPROPORTIONATING ENZYME 1		7	Q8LI30. pectinesterase in Tang et al. 2023. GO:0102500: beta-maltose 4-alpha-glucanotransferase activity.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os07g0627000	LOC_Os07g43390.1				GO:0019252 - starch biosynthetic process, GO:0004134 - 4-alpha-glucanotransferase activity, GO:0005983 - starch catabolic process, GO:0000025 - maltose catabolic process, GO:0009507 - chloroplast, GO:0009312 - oligosaccharide biosynthetic process, GO:0006006 - glucose metabolic process, GO:0009501 - amyloplast	TO:0002658 - starch grain synthesis	PO:0009089 - endosperm 
21328	DPE2	OsDPE2, OsDpe2, Dpe2	DISPROPORTIONATING ENZYME 2	disproportionating enzyme 2	DISPROPORTIONATING ENZYME 2	osdpe2-d, osdpe2#01	7	Q69Q02. GO:2001070: starch binding. GO:0080186: developmental vegetative growth. TO:0000936: infructescence yield trait.	 Biochemical character,  Character as QTL - Plant growth activity,  Reproductive organ - panicle,  Vegetative organ - Culm	Os07g0662900	LOC_Os07g46790.1				GO:0005829 - cytosol, GO:0048281 - inflorescence morphogenesis, GO:0009416 - response to light stimulus, GO:0009646 - response to absence of light, GO:0004134 - 4-alpha-glucanotransferase activity, GO:0007623 - circadian rhythm, GO:0009648 - photoperiodism, GO:0005983 - starch catabolic process, GO:0048608 - reproductive structure development, GO:0005737 - cytoplasm	TO:0000075 - light sensitivity, TO:0000040 - panicle length, TO:0000547 - primary branch number, TO:0000262 - panicle shape, TO:0000392 - sterility or fertility trait, TO:0000207 - plant height, TO:0000696 - starch content, TO:0000456 - spikelet number, TO:0000357 - growth and development trait, TO:0000621 - inflorescence development trait, TO:0000557 - secondary branch number, TO:0000346 - tiller number	PO:0000230 - inflorescence meristem , PO:0004006 - mesophyll cell , PO:0001083 - inflorescence development stage , PO:0009039 - glume , PO:0009066 - anther , PO:0009105 - inflorescence branch meristem , PO:0006327 - spikelet meristem 
21329	TSD2 	OsTSD2, OsQUA2, QUA2	TUMOROUS SHOOT DEVELOPMENT 2	TUMOROUS SHOOT DEVELOPMENT2, QUASIMODO2, QUASIMODO 2		tsd2, Ostsd2, Ostsd2a, Ostsd2b, Ostsd2c, Osqua2, Osqua2-1, Osqua2-2, Osqua2-3, tsd2-1, tsd2-2, sstm1	2	LOC_Os02g51860. the rice ortholog of AtQUA2. a pectin methyltransferase. GO:1903648: positive regulation of chlorophyll catabolic process.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Vegetative organ - Root	Os02g0755000	LOC_Os02g51860.1				GO:0045489 - pectin biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0007155 - cell adhesion, GO:0005802 - trans-Golgi network, GO:0032259 - methylation, GO:0005774 - vacuolar membrane, GO:0005768 - endosome, GO:0045488 - pectin metabolic process, GO:0048364 - root development, GO:0010150 - leaf senescence, GO:0005794 - Golgi apparatus, GO:0010394 - homogalacturonan metabolic process, GO:0016021 - integral to membrane, GO:0010618 - aerenchyma formation, GO:0050801 - ion homeostasis, GO:0009827 - plant-type cell wall modification, GO:0009635 - response to herbicide, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0015996 - chlorophyll catabolic process, GO:0008168 - methyltransferase activity, GO:0009737 - response to abscisic acid stimulus	TO:0000495 - chlorophyll content, TO:0001013 - lateral root number, TO:0000396 - grain yield, TO:0020003 - shoot potassium content, TO:0020004 - shoot sodium content, TO:0000058 - herbicide sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000207 - plant height, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity, TO:0000328 - sucrose content, TO:0002668 - jasmonic acid content, TO:0000249 - leaf senescence, TO:0000163 - auxin sensitivity	PO:0009047 - stem , PO:0001031 - 4 root elongation stage , PO:0007520 - root development stage , PO:0005020 - vascular bundle 
21330	MODD	OsMODD	SEED DORMANCY 3.1	Mediator of OsbZIP46 deactivation and degradation, Seed Dormancy 3.1	MEDIATOR OF OSBZIP46 DEACTIVATION AND DEGRADATION	modd-1, modd-2	3	Q10Q07. homologous to the Arabidopsis thaliana ABSCISIC ACID-INSENSITIVE5 (ABI5)-binding protein AFP. an OsbZIP46-interacting protein. GO:0080148: negative regulation of response to water deprivation. GO:1902039: negative regulation of seed dormancy process.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy,  Character as QTL - Germination	Os03g0214200	LOC_Os03g11550.1, LOC_Os03g11550.2				GO:0009414 - response to water deprivation, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0007165 - signal transduction, GO:0048623 - seed germination on parent plant, GO:0010162 - seed dormancy, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000253 - seed dormancy	PO:0009005 - root , PO:0009030 - carpel , PO:0009066 - anther , PO:0009039 - glume , PO:0025034 - leaf 
21331	FAH1	Os-FAH1, OsFAH1	FATTY ACID 2-HYDROXYLASE 1	fatty acid 2-hydroxylase 1	FATTY ACID 2-HYDROXYLASE 1		12		 Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0628400 	LOC_Os12g43363.1, LOC_Os12g43363.2, LOC_Os12g43363.3				GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0006633 - fatty acid biosynthetic process, GO:0080132 - fatty acid alpha-hydroxylase activity, GO:0006665 - sphingolipid metabolic process, GO:0005506 - iron ion binding, GO:0005783 - endoplasmic reticulum, GO:0006631 - fatty acid metabolic process	TO:0000074 - blast disease	
21332	FAH2	Os-FAH2, OsFAH2	FATTY ACID 2-HYDROXYLASE 2	fatty acid 2-hydroxylase 2	FATTY ACID 2-HYDROXYLASE 2		3		 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0780800  	LOC_Os03g56820.1, LOC_Os03g56820.2, LOC_Os03g56820.3				GO:0005783 - endoplasmic reticulum, GO:0006631 - fatty acid metabolic process, GO:0006633 - fatty acid biosynthetic process, GO:0006665 - sphingolipid metabolic process, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0080132 - fatty acid alpha-hydroxylase activity, GO:0005506 - iron ion binding	TO:0000074 - blast disease	
21333	_	Os2OG-Fe (II) oxy, 2OG-Fe (II) oxy	_	2OG-Fe (II) oxygenase domain containing protein, 2OG-Fe (II) oxygenase family protein			1	LOC_Os01g61440.1	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0830500	LOC_Os01g61440.1				GO:0051213 - dioxygenase activity, GO:0006950 - response to stress	TO:0000164 - stress trait	
21334	SDR110C-MI3 	OsSDR110C-MI3	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 110C-MI3	short-chain alcohol dehydrogenase/reductase 110C-MI3, OsSDR110C family member MI3	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 110C-MI3		7	a momilactone biosynthetic gene. momilactone A synthase-like. BGIOSGA026331 (indica).	 Biochemical character,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os07g0663700	LOC_Os07g46846.1				GO:0002215 - defense response to nematode, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0052315 - phytoalexin biosynthetic process	TO:0000384 - nematode damage resistance, TO:0002670 - momilactone A content, TO:0000439 - fungal disease resistance	
21335	SDR110C-MS3 	OsSDR110C-MS3	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 110C-MS3	short-chain alcohol dehydrogenase/reductase 110C-MS3, OsSDR110C family member MS3	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 110C-MS3		4	a momilactone biosynthetic gene.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0405300	LOC_Os04g33240.1				GO:0052315 - phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0016491 - oxidoreductase activity, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0000439 - fungal disease resistance, TO:0002670 - momilactone A content	
21336	_	OsSDR110C-MI2, SDR110C-MI2	_	short-chain alcohol dehydrogenase/reductase 110C-MI2, OsSDR110C family member MI2			7		 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0663600	LOC_Os07g46840.1				GO:0002238 - response to molecule of fungal origin, GO:0016491 - oxidoreductase activity	TO:0000439 - fungal disease resistance	
21337	_	OsSDR110C-MI4, SDR110C-MI4	_	short-chain alcohol dehydrogenase/reductase 110C-MI4, OsSDR110C family member MI4			7		 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0663800	LOC_Os07g46852.1, LOC_Os07g46852.2, LOC_Os07g46852.3, LOC_Os07g46852.4				GO:0002238 - response to molecule of fungal origin	TO:0000439 - fungal disease resistance	
21338	SDR110C-MS2	OsSDR110C-MS2, OsMAS1, MAS1, OsMS2, MS2, MAS2	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 110C-MS2	short-chain alcohol dehydrogenase/reductase 110C-MS2, OsSDR110C family member MS2, momilactone A synthase 1	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 110C-MS2		4	a momilactone biosynthetic gene. OsMS2 (MAS2) in Kitaoka et al. 2021.	 Biochemical character	Os04g0179100	LOC_Os04g10000.1				GO:0006952 - defense response, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0019290 - siderophore biosynthetic process, GO:0052315 - phytoalexin biosynthetic process, GO:0009628 - response to abiotic stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0008667 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity, GO:0002238 - response to molecule of fungal origin	TO:0002670 - momilactone A content, TO:0000168 - abiotic stress trait, TO:0000112 - disease resistance, TO:0000172 - jasmonic acid sensitivity	
21339	_		_	a homolog of Arabidopsis thaliana HEN1 suppressor 1, HESO1 homolog			1	LOC_Os01g62780.	 Reproductive organ - Heading date	Os01g0846450	LOC_Os01g62780.1				GO:0048573 - photoperiodism, flowering, GO:0016021 - integral to membrane	TO:0002616 - flowering time, TO:0000137 - days to heading	
21340	_	OsHIGD3, HIGD3	_	Hypoxia-Induced Gene Domain 3, Hypoxia-Induced Gene Domain Protein 3			11	LOC_Os11g02080.	 Tolerance and resistance - Stress tolerance	Os11g0112000 	LOC_Os11g02080.1				GO:0030912 - response to deep water, GO:0001666 - response to hypoxia	TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity	PO:0025034 - leaf , PO:0009005 - root , PO:0020037 - mesocotyl , PO:0009010 - seed 
21341	_	OsHIGD5, HIGD5	_	Hypoxia-Induced Gene Domain 5, Hypoxia-Induced Gene Domain Protein 5			12	LOC_Os12g02040. GO:0097249: mitochondrial respiratory chain super complex.	 Tolerance and resistance - Stress tolerance	Os12g0111600 	LOC_Os12g02040.1				GO:0033617 - mitochondrial respiratory chain complex IV assembly, GO:0030912 - response to deep water, GO:0001666 - response to hypoxia, GO:0031305 - integral to mitochondrial inner membrane	TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity	PO:0025034 - leaf , PO:0009005 - root , PO:0009010 - seed , PO:0020037 - mesocotyl 
21342	_	OsHIGD4, HIGD4	_	Hypoxia-Induced Gene Domain 4, Hypoxia-Induced Gene Domain Protein 4			2	LOC_Os02g37930. GO:0097249: mitochondrial respiratory chain super complex.		Os02g0592400 	LOC_Os02g37930.1				GO:0031305 - integral to mitochondrial inner membrane, GO:0033617 - mitochondrial respiratory chain complex IV assembly		PO:0009010 - seed , PO:0025034 - leaf 
21343	MDH3.1	OsMDH3.1, OsLdh4, Ldh4	MALATE DEHYDROGENASE 3.1	malate dehydrogenase, Lactate Dehydrogenase 4	MALATE DEHYDROGENASE 3.1		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0773800	LOC_Os03g56280.1				GO:0005737 - cytoplasm, GO:0046685 - response to arsenic, GO:0009739 - response to gibberellin stimulus, GO:0005975 - carbohydrate metabolic process, GO:0045454 - cell redox homeostasis, GO:0000302 - response to reactive oxygen species, GO:0005739 - mitochondrion, GO:0030060 - L-malate dehydrogenase activity, GO:0009409 - response to cold, GO:0034059 - response to anoxia, GO:0001666 - response to hypoxia, GO:0006108 - malate metabolic process, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0006099 - tricarboxylic acid cycle	TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000015 - oxygen sensitivity	PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0009047 - stem , PO:0020104 - leaf sheath 
21344	_	PBI1, OsPBI1	_	OsPUB44-interacting protein 1, PUB44-interacting protein 1			1	domain of unknown function (DUF) family DUF1110. DUF1110 family member. PBI1 is an interactor for a rice U-box-type ubiquitin E3 ligase, OsPUB44 which positively regulates PAMP-triggered immunity downstream of PRRs (Kawasaki et al., in preparation).		Os01g0156300 	LOC_Os01g06340.1						
21345	_		_				1	domain of unknown function (DUF) family DUF1110. DUF1110 family member. DUF1110 protein.		Os01g0156400  	LOC_Os01g06350.1						
21346	_		_				1	domain of unknown function (DUF) family DUF1110. DUF1110 family member. DUF1110 protein.		Os01g0157100   	LOC_Os01g06390.1						
21348	_	OsCOLE1, COLE1	_	OsCONTINUOUS VASCULAR RING-LIKE 1, CONTINUOUS VASCULAR RING-LIKE 1, OsCOV-LIKE 1, COV-LIKE 1			5	a homolog of AtCOV1. LOC_Os05g45280. KT935168. GO:0080162: intracellular auxin transport.	 Vegetative organ - Culm	Os05g0529000	LOC_Os05g45280.1				GO:0005773 - vacuole, GO:0009705 - plant-type vacuole membrane, GO:0009914 - hormone transport, GO:0016021 - integral to membrane	TO:0002672 - auxin content, TO:0000145 - internode length	
21349	_	OsCLIP, CLIP	_	OsCOLE1-INTERACTING PROTEIN, COLE1-INTERACTING PROTEIN			7	LOC_Os07g34110. KT935169. GO:0080162: intracellular auxin transport.	 Vegetative organ - Culm	Os07g0525100	LOC_Os07g34110.1				GO:0009914 - hormone transport, GO:0006810 - transport, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005773 - vacuole, GO:0009705 - plant-type vacuole membrane		
21350	_	OsPAP2, PAP2, OsPAP2/OspTAC2, OspTAC2, pTAC2	_	PEP-associated protein 1, plastid-encoded plastid polymerase-associated protein 1, plastid transcriptionally active chromosome 2													
21351	_	OsPAP3, PAP3, OsPAP3/OspTAC10, OspTAC10, pTAC10	_	PEP-associated protein 3, plastid-encoded plastid polymerase-associated protein 3, plastid transcriptionally active chromosome 10													
21352	_	OsPAP4, PAP4, OsPAP4/OsFSD3, OsFSD3, FSD3	_	PEP-associated protein 4, plastid-encoded plastid polymerase-associated protein 4													
21353	_	OsPAP5, PAP5, OsPAP5/OspTAC12, OspTAC12, pTAC12	_	PEP-associated protein 5, plastid-encoded plastid polymerase-associated protein 5, plastid transcriptionally active chromosome 12													
21354	_	OsPAP6, PAP6, OsPAP6/OsFLN1, OsFLN1, FLN1	_	PEP-associated protein 6, plastid-encoded plastid polymerase-associated protein 6													
21355	_	OsPAP7, PAP7, OsPAP7/OspTAC14, OspTAC14, pTAC14	_	PEP-associated protein 7, plastid-encoded plastid polymerase-associated protein 7, plastid transcriptionally active chromosome 14													
21356	_	OsPAP8, PAP8	_	PEP-associated protein 8, plastid-encoded plastid polymerase-associated protein 8													
21357	_	OsPAP9, PAP9, OsPAP9/OsFSD2, OsFSD2, FSD2	_	PEP-associated protein 9, plastid-encoded plastid polymerase-associated protein 9													
21358	WP2	TRXZ, OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz, OsTrx25, Trx25	WHITE PANICLE 2	PEP-associated protein 10, plastid-encoded plastid polymerase-associated protein 10, plastidic thioredoxin Z, THIOREDOXINZ, thioredoxin Z, white panicle2, Thioredoxin 25	THIOREDOXIN 25	wp2, Ostrx z, trxz-1, trxz-2, trxz-3, trxz-8, trxz-9, trxz-10, trxz-11	8	Q8H2V6. a subunit of PEP in chloroplasts. an orthologue of AtTRX z in Arabidopsis. GO:1900865: chloroplast RNA modification. GO:0001063: plastid PEP-B RNA polymerase activity. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Coloration - Others,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os08g0378900	LOC_Os08g29110.2, LOC_Os08g29110.1				GO:0009408 - response to heat, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0008219 - cell death, GO:0006952 - defense response, GO:0006662 - glycerol ether metabolic process, GO:0005737 - cytoplasm, GO:0009295 - nucleoid, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009507 - chloroplast, GO:0009579 - thylakoid, GO:0042793 - transcription from plastid promoter, GO:0009657 - plastid organization, GO:0009658 - chloroplast organization, GO:0015035 - protein disulfide oxidoreductase activity, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0031347 - regulation of defense response, GO:0034051 - negative regulation of plant-type hypersensitive response, GO:0034599 - cellular response to oxidative stress, GO:0047134 - protein-disulfide reductase activity, GO:0045454 - cell redox homeostasis	TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000201 - panicle color, TO:0000259 - heat tolerance, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content	PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0025034 - leaf 
21359	_	OsPAP11, PAP11	_	PEP-associated protein 11, plastid-encoded plastid polymerase-associated protein 11													
21360	_	OsPAP12, PAP12, OsPAP12/OspTAC7, OspTAC7, pTAC7	_	PEP-associated protein 12, plastid-encoded plastid polymerase-associated protein 12, plastid transcriptionally active chromosome 7													
21361	PHT2	Os-PHT2, OsPHT2	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 2	putrescine hydroxycinnamoyl transferase 2	PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 2		6	KX430017. LOC_Os06g08610.	 Biochemical character	Os06g0185300	LOC_Os06g08610.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21362	THT1	Os-THT1, OsTHT1	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 1	Tryptamine hydroxycinnamoyl transferase 1	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 1		10	KX430019.	 Biochemical character	Os10g0379100	LOC_Os10g23310.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0002238 - response to molecule of fungal origin, GO:0009809 - lignin biosynthetic process		
21363	THT2	Os-THT2, OsTHT2	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 2	Tryptamine hydroxycinnamoyl transferase 2	TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 2		10	KX430020. LOC_Os10g23820.	 Biochemical character	Os10g0380100	LOC_Os10g23820.1, LOC_Os10g23820.2				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21364	TBT1	Os-TBT1, OsTBT1	TRYPTAMINE BENZOYL TRANSFERASE 1	tryptamine benzoyl transferase 1	TRYPTAMINE BENZOYL TRANSFERASE 1		11	KX430021. LOC_Os11g42290.	 Biochemical character	Os11g0642400	LOC_Os11g42290.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21365	MTOPVIB	OsMTOPVIB	_	meiotic DNA topoisomerase VIB subunit, DNA Topoisomerase VI-B Subunit		mtopVIB, OsmtopVIB, OsmtopVIB-1, OsmtopVIB-2, OsmtopVIB-3	6	homology with Arabidopsis MTOPVIB. GO:0090306: spindle assembly involved in meiosis.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0708200	LOC_Os06g49450.3, LOC_Os06g49450.2, LOC_Os06g49450.1				GO:0007128 - meiotic prophase I, GO:0010845 - positive regulation of reciprocal meiotic recombination, GO:0042138 - meiotic DNA double-strand break formation, GO:0016021 - integral to membrane, GO:0007130 - synaptonemal complex assembly, GO:0009555 - pollen development	TO:0000485 - sterility related trait, TO:0000053 - pollen sterility	PO:0001007 - pollen development stage 
21366	_	gammaH2AX	_	histone H2AX gamma					 Reproductive organ - Pollination, fertilization, fertility - Meiosis								
21367	NPF2.4	OsNPF2.4, OsPTR2, PTR2	NRT1/PTR FAMILY 2.4	NRT1/PTR family 2.4, NO3-/peptide transporter family 2.4	NRT1/PTR FAMILY 2.4	npf2.4, npf2.4-1, npf2.4-2	3	peptide transporter (PTR) gene family. GO:0035864: response to potassium ion. GO:1902025: nitrate import. osa-miR168a target gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits	Os03g0687000	LOC_Os03g48180.1, LOC_Os03g48180.2				GO:0016021 - integral to membrane, GO:0055078 - sodium ion homeostasis, GO:0055081 - anion homeostasis, GO:0009413 - response to flooding, GO:0080055 - low affinity nitrate transport, GO:0005886 - plasma membrane, GO:0005215 - transporter activity, GO:0009651 - response to salt stress	TO:0000008 - potassium sensitivity, TO:0000345 - seed viability, TO:0006001 - salt tolerance, TO:0000513 - potassium concentration, TO:0000114 - flooding related trait	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0005679 - epidermis 
21368	_	UPF3	_	Nonsense-mediated decay UPF3			4	LOC_Os04g35920.2.	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0440100	LOC_Os04g35920.2				GO:0000166 - nucleotide binding, GO:0048653 - anther development		PO:0001004 - anther development stage 
21369	UMAMIT1	OsUMAMIT1	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 1	Usually Multiple Acids Move In and out Transporter 1	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 1		1	LOC_Os01g02870.	 Biochemical character	Os01g0117900	LOC_Os01g02870.1				GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0006810 - transport		
21370	UMAMIT2	OsUMAMIT2	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 2	Usually Multiple Acids Move In and out Transporter 2	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 2		1	LOC_Os01g10970.	 Biochemical character	Os01g0207700	LOC_Os01g10970.1				GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006810 - transport		
21371	UMAMIT3	OsUMAMIT3	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 3	Usually Multiple Acids Move In and out Transporter 3	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 3		1	LOC_Os01g10980.	 Biochemical character	Os01g0207900	LOC_Os01g10980.1				GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006810 - transport		
21372	UMAMIT4	OsUMAMIT4	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 4	Usually Multiple Acids Move In and out Transporter 4	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 4		1	LOC_Os01g10990.	 Biochemical character	Os01g0208000	LOC_Os01g10990.1				GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0006810 - transport		
21373	UMAMIT8	OsUMAMIT8	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 8	Usually Multiple Acids Move In and out Transporter 8	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 8		5	LOC_Os05g01570.	 Biochemical character	Os05g0106200	LOC_Os05g01570.1				GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane		
21374	UMAMIT5	OsUMAMIT5	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 5	Usually Multiple Acids Move In and out Transporter 5	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 5		1	LOC_Os01g19290.	 Biochemical character	Os01g0297700	LOC_Os01g19290.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006810 - transport		
21375	UMAMIT6	OsUMAMIT6	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 6	Usually Multiple Acids Move In and out Transporter 6	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 6		2	LOC_Os02g47500.	 Biochemical character	Os02g0703900	LOC_Os02g47500.1				GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity		
21376	UMAMIT7	OsUMAMIT7	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 7	Usually Multiple Acids Move In and out Transporter 7	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 7		4	LOC_Os04g59120.	 Biochemical character	Os04g0687800	LOC_Os04g59120.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0022857 - transmembrane transporter activity		
21377	UMAMIT9	OsUMAMIT9	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 9	Usually Multiple Acids Move In and out Transporter 9	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 9		5		 Biochemical character	Os05g0409500	LOC_Os05g33900.1				GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity		
21378	UMAMIT10	OsUMAMIT10	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 10	Usually Multiple Acids Move In and out Transporter 10	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 10		6	LOC_Os06g01660.	 Biochemical character	Os06g0105700	LOC_Os06g01660.1				GO:0022857 - transmembrane transporter activity, GO:0006810 - transport, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
21379	UMAMIT11	OsUMAMIT11	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 11	Usually Multiple Acids Move In and out Transporter 11	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 11		7	LOC_Os07g30210.	 Biochemical character	Os07g0485500	LOC_Os07g30210.1, LOC_Os07g30210.2				GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006810 - transport, GO:0016021 - integral to membrane		
21380	UMAMIT12	OsUMAMIT12	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 12	Usually Multiple Acids Move In and out Transporter 12	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 12		8	LOC_Os08g44750.	 Biochemical character	Os08g0561500	LOC_Os08g44750.1				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0005886 - plasma membrane		
21381	UMAMIT13	OsUMAMIT13	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 13	Usually Multiple Acids Move In and out Transporter 13	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 13		9	LOC_Os09g25770.	 Biochemical character	Os09g0426000	LOC_Os09g25770.1, LOC_Os09g25770.2				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0005886 - plasma membrane		
21382	UMAMIT14	OsUMAMIT14	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 14	Usually Multiple Acids Move In and out Transporter 14	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 14		9	LOC_Os09g25810.	 Biochemical character	Os09g0426500	LOC_Os09g25810.2				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane		
21383	UMAMIT15	OsUMAMIT15	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 15	Usually Multiple Acids Move In and out Transporter 15	USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 15		10	GO:0080144: amino acid homeostasis.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0210500	LOC_Os10g14920.7, LOC_Os10g14920.6, LOC_Os10g14920.5, LOC_Os10g14920.1, LOC_Os10g14920.2, LOC_Os10g14920.3				GO:0015171 - amino acid transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0043090 - amino acid import, GO:0032973 - amino acid export	TO:0006001 - salt tolerance	
21384	MFS1	OsMFS1	MAJOR FACILITATOR SUPERFAMILY 1	major facilitator superfamily 1	MAJOR FACILITATOR SUPERFAMILY 1		3	LOC_Os03g47810.		Os03g0682100	LOC_Os03g47810.1				GO:0016021 - integral to membrane		
21385	MFS2	OsMFS2	MAJOR FACILITATOR SUPERFAMILY 2	major facilitator superfamily 2	MAJOR FACILITATOR SUPERFAMILY 2		4	LOC_Os04g42420.	 Biochemical character	Os04g0502800	LOC_Os04g42420.1, LOC_Os04g42420.2, LOC_Os04g42420.3				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
21386	MFS3	OsMFS3	MAJOR FACILITATOR SUPERFAMILY 3	major facilitator superfamily 3	MAJOR FACILITATOR SUPERFAMILY 3		5	LOC_Os05g39800.		Os05g0475700	LOC_Os05g39800.1				GO:0016021 - integral to membrane		
21387	MFS4	OsMFS4	MAJOR FACILITATOR SUPERFAMILY 4	major facilitator superfamily 4	MAJOR FACILITATOR SUPERFAMILY 4		8	LOC_Os08g42010.		Os08g0532400	LOC_Os08g42010.1				GO:0016021 - integral to membrane		
21388	MFS5	OsMFS5	MAJOR FACILITATOR SUPERFAMILY 5	major facilitator superfamily 5	MAJOR FACILITATOR SUPERFAMILY 5		9	LOC_Os09g36600.		Os09g0536700	LOC_Os09g36600.1, LOC_Os09g36600.2				GO:0016021 - integral to membrane		
21389	MFS6	OsMFS6	MAJOR FACILITATOR SUPERFAMILY 6	major facilitator superfamily 6	MAJOR FACILITATOR SUPERFAMILY 6		11	LOC_Os11g01590.		Os11g0107400	LOC_Os11g01590.1				GO:0016021 - integral to membrane		
21390	MFS7	OsMFS7	MAJOR FACILITATOR SUPERFAMILY 7	major facilitator superfamily 7	MAJOR FACILITATOR SUPERFAMILY 7		12	LOC_Os12g01570.		Os12g0106500	LOC_Os12g01570.1				GO:0016021 - integral to membrane		
21391	MFS8	OsMFS8	MAJOR FACILITATOR SUPERFAMILY 8	major facilitator superfamily 8	MAJOR FACILITATOR SUPERFAMILY 8		12	LOC_Os12g44180.	 Biochemical character	Os12g0639100	LOC_Os12g44180.1				GO:0016021 - integral to membrane, GO:0055085 - transmembrane transport		
21392	NL1	OsVTL2, VTL2, OsNL1	NODULIN-LIKE PROTEIN 1	OsNodulin-like1, Nodulin-like1, vacuolar iron transporter homolog 2, Vacuolar Iron Transporter-Like 2, NODULIN-LIKE 2	NODULIN-LIKE PROTEIN 1		4	B7F138. Vacuolar Iron Transporter/Nodulin-like family. GO:0071281: cellular response to iron ion. GO:0071421: manganese ion transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0538400	LOC_Os04g45520.1				GO:0005774 - vacuolar membrane, GO:0030026 - cellular manganese ion homeostasis, GO:0006880 - intracellular sequestering of iron ion, GO:0005381 - iron ion transmembrane transporter activity, GO:0005384 - manganese ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0016020 - membrane		
21393	NL2	OsVTL5, VTL5, OsNL2	NODULIN-LIKE PROTEIN 2	OsNodulin-like2, Nodulin-like2, Vacuolar Iron Transporter-Like 5, NODULIN-LIKE 5	NODULIN-LIKE PROTEIN 2		4	LOC_Os04g59020. Q7XTL7. Vacuolar Iron Transporter/Nodulin-like family. GO:0071281: cellular response to iron ion. GO:0071421: manganese ion transmembrane transport.	 Biochemical character	Os04g0686800	LOC_Os04g59020.1				GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0005384 - manganese ion transmembrane transporter activity, GO:0005381 - iron ion transmembrane transporter activity, GO:0030026 - cellular manganese ion homeostasis, GO:0006880 - intracellular sequestering of iron ion, GO:0016020 - membrane		
21394	_	ARGOS	_				11	LOC_Os11g14190. related to auxin signaling.		Os11g0247000	LOC_Os11g14190.1, LOC_Os11g14190.2				GO:0016021 - integral to membrane		
21395	_		_	Cytokinin-O-glucosyltransferase2, Cytokinin-O-glucosyltransferase 2			6	LOC_Os06g11720. related to cytokinin signaling. GO:0052696 flavonoid glucuronidation.	 Biochemical character	Os06g0220500	LOC_Os06g11720.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0009813 - flavonoid biosynthetic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity		
21396	BIN1	OsBIN1	 BRASSINOSTEROID INSENSITIVE 1	BRASSINOSTEROID INSENSITIVE1			7	related to Brassinosteroid signaling. 		Os07g0597200	LOC_Os07g40630.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
21397	PT19	OsPT19	PHOSPHATE TRANSPORTER 19	phosphate transporter 19	PHOSPHATE TRANSPORTER 19		9	LOC_Os09g28160.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0454600	LOC_Os09g28160.1				GO:0016036 - cellular response to phosphate starvation, GO:0003735 - structural constituent of ribosome, GO:0005777 - peroxisome, GO:0006412 - translation, GO:0006810 - transport, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0016021 - integral to membrane	TO:0000102 - phosphorus sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	
21398	PT14	OsPT14, OsPHT2;1, PHT2;1	PHOSPHATE TRANSPORTER 14	phosphate transporter 14, phosphate transporter 2;1	PHOSPHATE TRANSPORTER 14	ospht2;1, ospht2;1-2, ospht2;1-8, ospht2;1-17	2	GO:0035435: phosphate ion transmembrane transport. TO:0020102: phosphate content. GO:1900384: regulation of flavonol biosynthetic process. GO:0110075: regulation of ferroptosis.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0593500	LOC_Os02g38020.2, LOC_Os02g38020.1				GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0005887 - integral to plasma membrane, GO:0006558 - L-phenylalanine metabolic process, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0042176 - regulation of protein catabolic process, GO:0051553 - flavone biosynthetic process, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0033500 - carbohydrate homeostasis, GO:0010109 - regulation of photosynthesis, GO:0055062 - phosphate ion homeostasis, GO:0005886 - plasma membrane, GO:0009941 - chloroplast envelope, GO:0009411 - response to UV, GO:0051555 - flavonol biosynthetic process, GO:0010224 - response to UV-B, GO:0009416 - response to light stimulus	TO:0000442 - plant fresh weight, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000702 - starch concentration, TO:0002674 - tryptophan content, TO:0000396 - grain yield, TO:0002673 - amino acid content, TO:0000290 - flavonoid content, TO:0000207 - plant height, TO:0000457 - total biomass yield, TO:0001015 - photosynthetic rate, TO:0000357 - growth and development trait, TO:0000601 - UV-B light sensitivity, TO:0000328 - sucrose content, TO:0000102 - phosphorus sensitivity, TO:0000160 - UV light sensitivity, TO:0000075 - light sensitivity	PO:0009010 - seed , PO:0009039 - glume , PO:0000258 - root cortex , PO:0025257 - primary root elongation zone , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0005020 - vascular bundle , PO:0020104 - leaf sheath , PO:0004006 - mesophyll cell , PO:0009037 - lemma , PO:0009038 - palea 
21399	PT16	OsPT16	POSPHATE TRANSPORTER 16	phosphate transporter 16	POSPHATE TRANSPORTER 16		3	LOC_Os03g15690. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0263400	LOC_Os03g15690.1, LOC_Os03g15690.2				GO:0005789 - endoplasmic reticulum membrane, GO:0016036 - cellular response to phosphate starvation, GO:0003735 - structural constituent of ribosome, GO:0016021 - integral to membrane, GO:0006810 - transport, GO:0006412 - translation	TO:0000102 - phosphorus sensitivity	
21400	PT22	OsPT22, OsPHT4;3, PHT4;3	PHOSPHATE TRANSPORTER 22	phosphate transporter 22	PHOSPHATE TRANSPORTER 22		1	Q8W0H5. OsPHT4;3 in Lu et al. 2023. GO:0098656: anion transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0852200	LOC_Os01g63290.2, LOC_Os01g63290.1				GO:0016036 - cellular response to phosphate starvation, GO:0006811 - ion transport, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0009737 - response to abscisic acid stimulus	TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
21401	PT15	OsPT15	PHOSPHATE TRANSPORTER 15	phosphate transporter 15	PHOSPHATE TRANSPORTER 15		2	LOC_Os02g52860. 	 Biochemical character	Os02g0767500	LOC_Os02g52860.1				GO:0006412 - translation, GO:0006810 - transport, GO:0032592 - integral to mitochondrial membrane, GO:0005777 - peroxisome, GO:0003735 - structural constituent of ribosome		
21402	PT17	OsPT17, OsMPT3;1, MPT3;1	PHOSPHATE TRANSPORTER 17	phosphate transporter 17, mitochondrial phosphate transporter 3;1	PHOSPHATE TRANSPORTER 17	mpt33	4	GO:2001169: regulation of ATP biosynthetic process. TO:0020102: phosphate content. TO:0006047: calcium content trait. GO:1990573: potassium ion import across plasma membrane. GO:0036376: sodium ion export across plasma membrane.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Plant growth activity	Os04g0448800	LOC_Os04g37600.1				GO:0006412 - translation, GO:0016021 - integral to membrane, GO:0009733 - response to auxin stimulus, GO:0006754 - ATP biosynthetic process, GO:0033198 - response to ATP, GO:0070509 - calcium ion import, GO:0003735 - structural constituent of ribosome, GO:0006817 - phosphate transport, GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0006810 - transport	TO:0000608 - sodium content, TO:0000340 - total soluble sugar content, TO:0020004 - shoot sodium content, TO:0020003 - shoot potassium content, TO:0000357 - growth and development trait, TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000578 - root fresh weight, TO:0000143 - relative biomass, TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000609 - potassium content, TO:0000571 - shoot fresh weight	PO:0009029 - stamen 
21403	PT18	OsPT18, OsMPT3;2, MPT3;2	PHOSPHATE TRANSPORTER 18	phosphate transporter 18, mitochondrial phosphate transporter 3;2	PHOSPHATE TRANSPORTER 18	mpt30	6	GO:2001169: regulation of ATP biosynthetic process. TO:0020102: phosphate content. TO:0006047: calcium content trait. TO:1000055: shoot system calcium content. GO:1990573: potassium ion import across plasma membrane. GO:0036376: sodium ion export across plasma membrane.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Biochemical character	Os06g0210500	LOC_Os06g10810.1				GO:0003735 - structural constituent of ribosome, GO:0006754 - ATP biosynthetic process, GO:0006412 - translation, GO:0006970 - response to osmotic stress, GO:0006810 - transport, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0070509 - calcium ion import, GO:0033198 - response to ATP, GO:0005777 - peroxisome	TO:0000357 - growth and development trait, TO:0000516 - relative root length, TO:0020003 - shoot potassium content, TO:0020004 - shoot sodium content, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000340 - total soluble sugar content, TO:0000609 - potassium content, TO:0000608 - sodium content, TO:0000571 - shoot fresh weight, TO:0000578 - root fresh weight, TO:0000143 - relative biomass, TO:0000525 - sodium to potassium content ratio, TO:0006002 - proline content	
21404	PT21	OsPT21	PHOSPHATE TRANSPORTER 21	phosphate transporter 21	PHOSPHATE TRANSPORTER 21		1	LOC_Os01g17240. Q9SDI4. GO:0098656: anion transmembrane transport.	 Biochemical character	Os01g0279700	LOC_Os01g17240.1				GO:0005777 - peroxisome, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane, GO:0009536 - plastid		PO:0020103 - flag leaf 
21405	PT23	OsPT23	PHOSPHATE TRANSPORTER 23	phosphate transporter 23	PHOSPHATE TRANSPORTER 23		5	LOC_Os05g37820. Q53WP9. GO:0098656: anion transmembrane transport.	 Biochemical character	Os05g0451100	LOC_Os05g37820.1				GO:0031969 - chloroplast membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0009536 - plastid, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane		
21406	PT24	OsPT24, OsPHT4;4, PHT4;4	PHOSPHATE TRANSPORTER 24	phosphate transporter 24, phosphate transporter 4;4	PHOSPHATE TRANSPORTER 24		9	Q652N5. GO:0098656: anion transmembrane transport.	 Biochemical character	Os09g0570400	LOC_Os09g39680.1				GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0009536 - plastid, GO:0016021 - integral to membrane, GO:0031969 - chloroplast membrane		PO:0020103 - flag leaf 
21407	PT25	OsPT25	PHOSPHATE TRANSPORTER 25	phosphate transporter 25	PHOSPHATE TRANSPORTER 25		11	LOC_Os11g08370. Q53P54. GO:0098656: anion transmembrane transport.	 Biochemical character	Os11g0186800	LOC_Os11g08370.1				GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0005789 - endoplasmic reticulum membrane, GO:0005886 - plasma membrane, GO:0005315 - inorganic phosphate transmembrane transporter activity		
21408	PT26	OsPT26	PHOSPHATE TRANSPORTER 26	phosphate transporter 26	PHOSPHATE TRANSPORTER 26		12	LOC_Os12g07970. Q2QWW7. GO:0098656: anion transmembrane transport.	 Biochemical character	Os12g0180100	LOC_Os12g07970.1, LOC_Os12g07970.2, LOC_Os12g07970.3, LOC_Os12g07970.4				GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0005315 - inorganic phosphate transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0005789 - endoplasmic reticulum membrane		
21409	2CYSPRXB	Os2-Cys PrxB, 2-Cys PrxB	2-CYS PEROXIREDOXIN B	peroxiredoxin, 2-Cys peroxiredoxin B	2-CYS PEROXIREDOXIN B		4	LOC_Os04g33970.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os04g0416400	LOC_Os04g33970.1				GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0051920 - peroxiredoxin activity, GO:0009555 - pollen development	TO:0000175 - bacterial blight disease resistance	PO:0001007 - pollen development stage , PO:0025281 - pollen 
21410	YL1		YELLOW LEAF 1	yellow leaf 1		yl1, yl1-1, yl1-2	2	LOC_Os02g05890. TO:0006060: leaf chlorosis.	 Vegetative organ - Culm,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os02g0152900	LOC_Os02g05890.1				GO:0009507 - chloroplast, GO:0009658 - chloroplast organization	TO:0000495 - chlorophyll content, TO:0000346 - tiller number, TO:0002715 - chloroplast development trait, TO:0000592 - 1000-dehulled grain weight, TO:0000316 - photosynthetic ability, TO:0000207 - plant height, TO:0000326 - leaf color	
21411	P31COMET	P31comet, OsBVF1, BVF1	_	Bivalent Formation 1		p31comet-1, p31comet-2, bvf1	5	a synaptonemal complex (SC) protein. OmpH/coiled-coil motif-containing protein.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0251400	LOC_Os05g16250.1				GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0000241 - diakinesis, GO:0005634 - nucleus, GO:0042138 - meiotic DNA double-strand break formation, GO:0007131 - reciprocal meiotic recombination, GO:0070193 - synaptonemal complex organization, GO:0007129 - synapsis, GO:0045132 - meiotic chromosome segregation, GO:0000706 - meiotic DNA double-strand break processing, GO:0000795 - synaptonemal complex, GO:0007133 - meiotic anaphase I	TO:0000180 - spikelet fertility, TO:0000485 - sterility related trait	PO:0009066 - anther 
21412	LMR	OsLMR, LRD6-6, OsLRD6-6, SPL-A, OsSPL-A	LESION MIMIC RESEMBLING	lesion resembling disease 6-6, spotted leaf mutant from A814		lrd6-6, lmr, spl-A	6	Multivesicular Bodies (MVBs)-Localized AAA ATPase. GO:0071985: multivesicular body sorting pathway. GO:1905627: regulation of serotonin biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Character as QTL - Grain quality,  Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Lesion mimic,  Character as QTL - Plant growth activity	Os06g0130000	LOC_Os06g03940.1				GO:0002785 - negative regulation of antimicrobial peptide production, GO:0031348 - negative regulation of defense response, GO:0060627 - regulation of vesicle-mediated transport, GO:0016887 - ATPase activity, GO:0031122 - cytoplasmic microtubule organization, GO:0016192 - vesicle-mediated transport, GO:0008568 - microtubule-severing ATPase activity, GO:0010581 - regulation of starch biosynthetic process, GO:0043067 - regulation of programmed cell death, GO:0002679 - respiratory burst during defense response, GO:0042427 - serotonin biosynthetic process, GO:0005634 - nucleus, GO:0052319 - regulation of phytoalexin biosynthetic process, GO:0005524 - ATP binding, GO:0060548 - negative regulation of cell death, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000207 - plant height, TO:0000112 - disease resistance, TO:0000266 - chalky endosperm, TO:0000357 - growth and development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000063 - mimic response, TO:0000455 - seed set percent, TO:0000605 - hydrogen peroxide content, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0002658 - starch grain synthesis, TO:0002669 - diterpenoid phytoalexin content	
21413	_	OsVPS2, VPS2	_	VPS2 component of ESCRT-III complex, ESCRT-III complex VPS2 component			3	LOC_Os03g43860.	 Biochemical character	Os03g0639800	LOC_Os03g43860.1				GO:0007034 - vacuolar transport		
21414	SNF7	OsSNF7, OsSnf7, Snf7	ESCRT-III COMPONENT SNF7	SNF7 component of ESCRT-III complex, ESCRT-III complex SNF7 component, SNF7 family protein	ESCRT-III COMPONENT SNF7		6		 Biochemical character	Os06g0608500	LOC_Os06g40620.1, LOC_Os06g40620.2				GO:0005771 - multivesicular body, GO:0007034 - vacuolar transport, GO:0006900 - membrane budding, GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway, GO:0000815 - ESCRT III complex, GO:0009898 - internal side of plasma membrane, GO:0005768 - endosome		
21415	_	OsSKD1, SKD1	_				1	LOC_Os01g04814. AtSKD1 homolog.	 Biochemical character	Os01g0141100	LOC_Os01g04814.1, LOC_Os01g04814.3, LOC_Os01g04814.4				GO:0005524 - ATP binding, GO:0007033 - vacuole organization, GO:0005634 - nucleus		
21416	GLP1-1	OsGLP1-1, OsCDP1.1, CDP1.1	GERMIN-LIKE PROTEIN 1-1	Germin-like protein 1-1, cupin domain protein 1.1	GERMIN-LIKE PROTEIN 1-1		1	GO:2000280: regulation of root development.		Os01g0249200	LOC_Os01g14670.1				GO:0005618 - cell wall, GO:0045735 - nutrient reservoir activity, GO:0009506 - plasmodesma, GO:0030145 - manganese ion binding, GO:0046564 - oxalate decarboxylase activity, GO:0033609 - oxalate metabolic process, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0005576 - extracellular region		
21417	GLP1-3	OsGLP1-3, OsGLP1-2, GLP1-2, OsCDP1.3, CDP1.3	GERMIN-LIKE PROTEIN 1-3	Germin-like protein 1-3, cupin domain protein 1.3	GERMIN-LIKE PROTEIN 1-3		1	Q94JF3. OsGLP1-2 in Das et al. 2019.		Os01g0705100	LOC_Os01g50900.1				GO:0048046 - apoplast, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0030145 - manganese ion binding, GO:0046564 - oxalate decarboxylase activity, GO:0005618 - cell wall		
21418	GLP1-5	OsGLP1-5, OsGLP1-4, GLP1-4, OsCDP1.4, CDP1.4	GERMIN-LIKE PROTEIN 1-5	Germin-like protein 1-5, cupin domain protein 1.4	GERMIN-LIKE PROTEIN 1-5		1	Q942A7. GO:2000280: regulation of root development. OsGLP1-4 in Das et al. 2019.		Os01g0952100	LOC_Os01g72300.1				GO:0045735 - nutrient reservoir activity, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0048046 - apoplast, GO:0046564 - oxalate decarboxylase activity, GO:0009506 - plasmodesma, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process		
21419	GLP2-1	OsGLP2-1, OsCDP2.1, CDP2.1	GERMIN-LIKE PROTEIN 2-1	Germin-like protein 2-1, cupin domain protein 2.1	GERMIN-LIKE PROTEIN 2-1	osglp2-1	2	Q6K5Q0. GO:1902040: positive regulation of seed dormancy process.	 Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Dormancy	Os02g0491600	LOC_Os02g29000.1				GO:0046564 - oxalate decarboxylase activity, GO:0010162 - seed dormancy, GO:0009738 - abscisic acid mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0048046 - apoplast, GO:0050832 - defense response to fungus, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity	TO:0000166 - gibberellic acid sensitivity, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity	PO:0025374 - seed dormant stage , PO:0020110 - scutellum 
21420	GLP2-2	OsGLP2-2	GERMIN-LIKE PROTEIN 2-2	Germin-like protein 2-2	GERMIN-LIKE PROTEIN 2-2		2	Q6K5P9. 		Os02g0491700	LOC_Os02g29010.1				GO:0048046 - apoplast, GO:0033609 - oxalate metabolic process, GO:0030145 - manganese ion binding, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0005618 - cell wall		
21421	GLP2-3	OsGLP2-3, OsCDP2.2, CDP2.2	GERMIN-LIKE PROTEIN 2-3	Germin-like protein 2-3, cupin domain protein 2.2	GERMIN-LIKE PROTEIN 2-3		2	Q6K5P8. 		Os02g0491800	LOC_Os02g29020.1				GO:0030145 - manganese ion binding, GO:0005618 - cell wall, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast		
21422	GLP2-4	OsGLP2-4, OsGLP2-1, GLP2-1, OsCDP2.3, CDP2.3	GERMIN-LIKE PROTEIN 2-4	Germin-like protein 2-4, german-like protein 2-1, cupin domain protein 2.3	GERMIN-LIKE PROTEIN 2-4		2	Q6ESF0. OsGLP2-1 in Liu et al. 2016. GO: 1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0532500	LOC_Os02g32980.1				GO:0030145 - manganese ion binding, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0033609 - oxalate metabolic process, GO:0032502 - developmental process, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0030912 - response to deep water, GO:0009753 - response to jasmonic acid stimulus, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity	TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002668 - jasmonic acid content, TO:0000477 - panicle blast disease resistance, TO:0000286 - submergence sensitivity, TO:0000172 - jasmonic acid sensitivity	
21423	GLP3-1	OsGLP3-1, OsCDP3.1, CDP3.1	GERMIN-LIKE PROTEIN 3-1	Germin-like protein 3-1, cupin domain protein 3.1	GERMIN-LIKE PROTEIN 3-1		3	Q8H021. 		Os03g0179100	LOC_Os03g08150.1				GO:0045735 - nutrient reservoir activity, GO:0033609 - oxalate metabolic process, GO:0048046 - apoplast, GO:0030145 - manganese ion binding, GO:0005618 - cell wall, GO:0046564 - oxalate decarboxylase activity		
21424	GLP3-2	OsGLP3-2, OsCDP3.4, CDP3.4	GERMIN-LIKE PROTEIN 3-2	Germin-like protein 3-2, cupin domain protein 3.4	GERMIN-LIKE PROTEIN 3-2		3	Q7XZY1. GO:2000280: regulation of root development.		Os03g0651800	LOC_Os03g44880.1				GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity, GO:0030145 - manganese ion binding, GO:0046564 - oxalate decarboxylase activity, GO:0005618 - cell wall, GO:0033609 - oxalate metabolic process, GO:0009506 - plasmodesma		
21425	GLP3-8	OsGLP3-8, OsCDP3.13, CDP3.13	GERMIN-LIKE PROTEIN 3-8	Germin-like protein 3-8, cupin domain protein 3.13	GERMIN-LIKE PROTEIN 3-8		3	Q75HJ4. cupin domain containing protein.	 Tolerance and resistance - Disease resistance	Os03g0804700	LOC_Os03g59010.1				GO:0046564 - oxalate decarboxylase activity, GO:0050832 - defense response to fungus, GO:0045735 - nutrient reservoir activity, GO:0033609 - oxalate metabolic process, GO:0030145 - manganese ion binding, GO:0005618 - cell wall, GO:0048046 - apoplast	TO:0000477 - panicle blast disease resistance	
21426	GLP3-9	OsGLP3-9, OsCDP3.12, CDP3.12	GERMIN-LIKE PROTEIN 3-9	Germin-like protein 3-9, cupin domain protein 3.12	GERMIN-LIKE PROTEIN 3-9		3			Os03g0804600	LOC_Os03g58990.1				GO:0045735 - nutrient reservoir activity		
21427	GLP5-1	OsGLP5-1	GERMIN-LIKE PROTEIN 5-1	Germin-like protein 5-1	GERMIN-LIKE PROTEIN 5-1		5	LOC_Os05g10830. Q688L5.		Os05g0197200	LOC_Os05g10830.1, LOC_Os05g10830.2				GO:0046564 - oxalate decarboxylase activity, GO:0030145 - manganese ion binding, GO:0005618 - cell wall, GO:0033609 - oxalate metabolic process, GO:0048046 - apoplast, GO:0045735 - nutrient reservoir activity		
21428	GLP5-2	OsGLP5-2, OsGLP5-1, GLP5-1, OsCDP5.2, CDP5.2	GERMIN-LIKE PROTEIN 5-2	Germin-like protein 5-2, cupin domain protein 5.2	GERMIN-LIKE PROTEIN 5-2		5	Q6I544. GO:2000280: regulation of root development. OsGLP5-1 in Das et al. 2019.	 Tolerance and resistance - Stress tolerance	Os05g0277500	LOC_Os05g19670.1				GO:0032502 - developmental process, GO:0048046 - apoplast, GO:0009506 - plasmodesma, GO:0005618 - cell wall, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0046564 - oxalate decarboxylase activity, GO:0045735 - nutrient reservoir activity, GO:0033609 - oxalate metabolic process, GO:0030145 - manganese ion binding, GO:0030912 - response to deep water	TO:0000286 - submergence sensitivity	
21429	GLP8-13	OsGLP8-13, OsCDP8.13, CDP8.13	GERMIN-LIKE PROTEIN 8-13	Germin-like protein 8-13, cupin domain protein 8.13	GERMIN-LIKE PROTEIN 8-13		8	Q6Z964.		Os08g0459700	LOC_Os08g35750.1				GO:0030145 - manganese ion binding, GO:0005618 - cell wall, GO:0032502 - developmental process, GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0048046 - apoplast		
21430	GLP9-1	OsGLP9-1, OsCDP9.4, CDP9.4	GERMIN-LIKE PROTEIN 9-1	Germin-like protein 9-1, cupin domain protein 9.4	GERMIN-LIKE PROTEIN 9-1		9	Q652Q1.		Os09g0568500	LOC_Os09g39510.1				GO:0033609 - oxalate metabolic process, GO:0045735 - nutrient reservoir activity, GO:0046564 - oxalate decarboxylase activity, GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0030145 - manganese ion binding		
21431	GLP9-2	OsGLP9-2, OsCDP9.5, CDP9.5	GERMIN-LIKE PROTEIN 9-2	Germin-like protein 9-2, cupin domain protein 9.5	GERMIN-LIKE PROTEIN 9-2		9	Q652Q0.		Os09g0568600	LOC_Os09g39520.1				GO:0046564 - oxalate decarboxylase activity, GO:0045735 - nutrient reservoir activity, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0048046 - apoplast		
21432	GLP9-3	OsGLP9-3, OsCDP9.6, CDP9.6	GERMIN-LIKE PROTEIN 9-3	Germin-like protein 9-3, cupin domain protein 9.6	GERMIN-LIKE PROTEIN 9-3		9	Q652P9.		Os09g0568700	LOC_Os09g39530.1				GO:0005618 - cell wall, GO:0048046 - apoplast, GO:0046564 - oxalate decarboxylase activity, GO:0045735 - nutrient reservoir activity, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process		PO:0009073 - stigma 
21433	GLP11-1	OsGLP11-1, OsCDP11.1, CDP11.1	GERMIN-LIKE PROTEIN 11-1	Germin-like protein 11-1, cupin domain protein 11.1	GERMIN-LIKE PROTEIN 11-1		11	Q2R352.	 Tolerance and resistance - Stress tolerance	Os11g0537350	LOC_Os11g33110.1				GO:0045735 - nutrient reservoir activity, GO:0005618 - cell wall, GO:0030145 - manganese ion binding, GO:0033609 - oxalate metabolic process, GO:0048046 - apoplast, GO:0009409 - response to cold, GO:0046564 - oxalate decarboxylase activity	TO:0000303 - cold tolerance	
21434	MBD707	OsMeCP, MeCP, OsMBD707	METHYL-CPG-BINDING PROTEIN 707	methyl-CpG binding domain protein, Methyl-CpG binding domain containing protein, methyl-CpG-binding protein 707	METHYL-CPG-BINDING PROTEIN 707	Osmbd707, Osmbd707-1, Osmbd707-2	12	GO:1902067: silicic acid import. a trans-acting factor. TO:0000949: seedling growth and development trait.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Vegetative organ - Culm	Os12g0620400	LOC_Os12g42550.1, LOC_Os12g42550.2				GO:0010224 - response to UV-B, GO:0009648 - photoperiodism, GO:0034021 - response to silicon dioxide, GO:0040029 - regulation of gene expression, epigenetic, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000391 - seed size, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000229 - photoperiod sensitivity, TO:0000567 - tiller angle, TO:0000601 - UV-B light sensitivity, TO:0000031 - silicon sensitivity	PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0009051 - spikelet , PO:0009010 - seed , PO:0020122 - inflorescence axis 
21435	_		_	cryptochrome			6	cryptochrome with blue-light photoreceptor activity but lacks photolyase activity. Q651U1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0661800	LOC_Os06g45100.1				GO:0010224 - response to UV-B, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0018298 - protein-chromophore linkage, GO:0006281 - DNA repair, GO:0003913 - DNA photolyase activity, GO:0003677 - DNA binding, GO:0009881 - photoreceptor activity	TO:0000601 - UV-B light sensitivity	
21436	_		_	(6-4) DNA photolyase			2	Q0E2Y1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0204400 	LOC_Os02g10990.1				GO:0003677 - DNA binding, GO:0003914 - DNA (6-4) photolyase activity, GO:0000166 - nucleotide binding, GO:0010224 - response to UV-B, GO:0009411 - response to UV, GO:0006281 - DNA repair	TO:0000601 - UV-B light sensitivity	
21437	PHRL	OsPHRL	DEOXYRIBODIPYRIMIDINE PHOTOLYASE FAMILY PROTEIN-LIKE	deoxyribodipyrimidine photolyase protein-like family protein	DEOXYRIBODIPYRIMIDINE PHOTOLYASE FAMILY PROTEIN-LIKE		9	.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0532700  	LOC_Os09g36240.1, LOC_Os09g36240.2, LOC_Os09g36240.3, LOC_Os09g36240.4				GO:0010224 - response to UV-B, GO:0016787 - hydrolase activity, GO:0016829 - lyase activity	TO:0000601 - UV-B light sensitivity	
21438	_	PHR2	_				3	a putative photolyase/blue-light receptor PHR2	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0343400   	LOC_Os03g22330.1				GO:0010224 - response to UV-B, GO:0016829 - lyase activity	TO:0000601 - UV-B light sensitivity	
21439	_	OsAGO2b, AGO2b	_	Argonaute 2b					 Reproductive organ - Pollination, fertilization, fertility - Meiosis						GO:0007126 - meiosis		PO:0009066 - anther 
21440	EIF6	eIF-6, OseIF6, OseIF6.1, eIF6.1	EUKARYOTIC INITIATION FACTOR 6	Eukaryotic translation initiation factor 6	EUKARYOTIC INITIATION FACTOR 6	oseif6.1	7	GO:1902626: assembly of large subunit precursor of pre ribosome. GO:1903046: meiotic cell cycle process. TO:0000975: grain width.	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Seed - Morphological traits - Grain shape	Os07g0639800	LOC_Os07g44620.1, LOC_Os07g44620.2				GO:0005829 - cytosol, GO:0003743 - translation initiation factor activity, GO:0009555 - pollen development, GO:0043022 - ribosome binding, GO:0048658 - tapetal layer development, GO:0005634 - nucleus, GO:0048316 - seed development, GO:0005737 - cytoplasm, GO:0042127 - regulation of cell proliferation, GO:0001558 - regulation of cell growth, GO:0030687 - preribosome, large subunit precursor, GO:0005730 - nucleolus, GO:0048653 - anther development, GO:0000054 - ribosome export from nucleus, GO:0042256 - mature ribosome assembly, GO:0000470 - maturation of LSU-rRNA, GO:0000460 - maturation of 5.8S rRNA, GO:0009793 - embryonic development ending in seed dormancy, GO:0009556 - microsporogenesis, GO:0043023 - ribosomal large subunit binding	TO:0000399 - grain thickness, TO:0000382 - 1000-seed weight, TO:0000421 - pollen fertility, TO:0000455 - seed set percent, TO:0000653 - seed development trait, TO:0000357 - growth and development trait, TO:0002730 - grain shape, TO:0000734 - grain length, TO:0000053 - pollen sterility, TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0000397 - grain size, TO:0002759 - grain number, TO:0000040 - panicle length, TO:0000557 - secondary branch number	PO:0001007 - pollen development stage , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0001004 - anther development stage , PO:0009005 - root , PO:0025034 - leaf , PO:0001170 - seed development stage 
21441	IF	OsIFL, IFL, OsIF	INTERMEDIATE FILAMENT	intermediate filament like protein, intermediate filament			1	LOC_Os01g18840. GO:2000021: regulation of ion homeostasis. GO:1901002: positive regulation of response to salt stress. TO: 0020076: phenolic compound content.	 Tolerance and resistance - Stress tolerance	Os01g0292700	LOC_Os01g18840.1				GO:0005856 - cytoskeleton, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0050801 - ion homeostasis, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0005829 - cytosol	TO:0000333 - sugar content, TO:0006001 - salt tolerance, TO:0000281 - metabolite content related trait, TO:0000095 - osmotic response sensitivity, TO:0000300 - glucose content, TO:0006002 - proline content, TO:0006007 - polysaccharide content, TO:0006005 - fructose content, TO:0000495 - chlorophyll content, TO:0002673 - amino acid content, TO:0002674 - tryptophan content, TO:0000525 - sodium to potassium content ratio	
21442	TIP1	OsTIP1, OsDHHC05, DHHC05, OsDHHC5, DHHC5	PALMITOYLTRANSFERASE TIP1	palmitoyltransferase TIP1, DHHC domain protein 5	PALMITOYLTRANSFERASE TIP1		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0184000	LOC_Os02g09130.1				GO:0005794 - Golgi apparatus, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0008270 - zinc ion binding, GO:0016021 - integral to membrane, GO:0006950 - response to stress, GO:0009628 - response to abiotic stimulus, GO:0018345 - protein palmitoylation, GO:0016409 - palmitoyltransferase activity	TO:0000179 - biotic stress trait	
21443	LPR1 	OsLPR1	LOW PHOSPHATE ROOT 1	Low Phosphate Root1, Low Phosphate Root 1			1	LOC_Os01g03530.	 Biochemical character	Os01g0126100	LOC_Os01g03530.1, LOC_Os01g03530.2				GO:0019028 - viral capsid, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding		
21444	LPR2	OsLPR2	LOW PHOSPHATE ROOT 2	Low Phosphate Root2, Low Phosphate Root 2			1	LOC_Os01g03549.	 Biochemical character	Os01g0126200	LOC_Os01g03549.1				GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0019028 - viral capsid		PO:0009006 - shoot system 
21445	LPR3	OsLPR3	LOW PHOSPHATE ROOT 3	Low Phosphate Root3, Low Phosphate Root 3		oslpr3, oslpr3-1, oslpr3-2, oslpr3-3	1	TO:0020102: phosphate content. GO:0080186: developmental vegetative growth. TO:0001041: root yield.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Biochemical character,  Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity	Os01g0127000	LOC_Os01g03630.1				GO:0006794 - phosphorus utilization, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0019028 - viral capsid, GO:0005507 - copper ion binding, GO:0048364 - root development, GO:0005783 - endoplasmic reticulum	TO:0000102 - phosphorus sensitivity, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000146 - seed length, TO:0001006 - adventitious root number, TO:0000149 - seed width, TO:0001034 - relative plant height, TO:0000391 - seed size, TO:0000656 - root development trait, TO:0000357 - growth and development trait, TO:0000511 - phosphorus uptake, TO:0000516 - relative root length, TO:0000143 - relative biomass, TO:0000465 - mineral and ion content related trait, TO:0000278 - root to shoot ratio, TO:0002710 - root shape, TO:0000306 - root thickness	PO:0009005 - root , PO:0007520 - root development stage 
21446	LPR4	OsLPR4	LOW PHOSPHATE ROOT 4	Low Phosphate Root4, Low Phosphate Root 4			1	LOC_Os01g03620.	 Biochemical character	Os01g0126900	LOC_Os01g03620.1				GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0019028 - viral capsid		PO:0009005 - root 
21447	RUS1	OsRUS1	ROOT UV-B SENSITIVE 1	ROOT UVB SENSITIVE 1			4	ortholog for AtRUS1. GEO database of NCBI: GSE128886.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0290800	LOC_Os04g22360.1				GO:0032502 - developmental process, GO:0009269 - response to desiccation, GO:0005739 - mitochondrion, GO:0009414 - response to water deprivation, GO:0009941 - chloroplast envelope, GO:0010224 - response to UV-B	TO:0000085 - leaf rolling, TO:0000394 - drought related trait	
21448	RUS2	OsRUS2, OsRUS2.1, OsRUS2.2	ROOT UV-B SENSITIVE 2				4	ortholog for AtRUS2.		Os04g0517300	LOC_Os04g43690.1, LOC_Os04g43690.2				GO:0009926 - auxin polar transport, GO:0009941 - chloroplast envelope, GO:0010224 - response to UV-B, GO:0005739 - mitochondrion		
21449	RUS3	OsRUS3	ROOT UV-B SENSITIVE 3				3	ortholog for AtRUS3.		Os03g0213700	LOC_Os03g11500.1				GO:0016021 - integral to membrane		
21450	RUS5	OsRUS5	ROOT UV-B SENSITIVE 5				1	ortholog for AtRUS5.		Os01g0141600	LOC_Os01g04860.1						
21451	RUS6A	OsRUS6A	ROOT UV-B SENSITIVE 6A				1	ortholog for AtRUS6.		Os01g0886900	LOC_Os01g66350.1						
21452	RUS6B	OsRUS6B	ROOT UV-B SENSITIVE 6B				5	ortholog for AtRUS6.		Os05g0419200	LOC_Os05g34650.1, LOC_Os05g34650.2						
21453	GPA4 	GOT1B, GLUP2	GLUTELIN PRECURSOR ACCUMULATION 4	glutelin precursor accumulation4, glutelin precursor accumulation, GOLGI TRANSPORT 1B	GOLGI TRANSPORT 1B	gpa4, gpa4-1, gpa4-2	3	GO:0090114: COPII-coated vesicle budding GO:0071806: protein transmembrane transport.		Os03g0209400 	LOC_Os03g11100.1				GO:0016021 - integral to membrane, GO:0070861 - regulation of protein exit from endoplasmic reticulum, GO:0016192 - vesicle-mediated transport, GO:0070971 - endoplasmic reticulum exit site		PO:0009089 - endosperm 
21454	TAC3	OsTAC3, OsEPFL3, EPFL3	TILLER ANGLE CONTROL 3 	Tiller Angle Control 3, EPF-LIKE 3	EPIDERMAL PATTERNING FACTOR-LIKE 3		3		 Vegetative organ - Culm	Os03g0726700	LOC_Os03g51660.1				GO:0005576 - extracellular region, GO:0010052 - guard cell differentiation	TO:0000567 - tiller angle	PO:0008039 - stem base 
21455	NPF7.2	OsNPF7.2	NRT1/PTR FAMILY 7.2	nitrate transporter 1/peptide transporter family gene 7.2, NRT1/PTR family 7.2	NRT1/PTR FAMILY 7.2	osnpf7.2-1, osnpf7.2-2, osnpf7.2	2	peptide transporter (PTR) gene family. TO:0020099: nitrate transport. TO:0020098: nitrate sensitivity. TO:0020094: nitrate content. TO:0020100: nitrate uptake. GO: 1902347: response to strigoractone. GO:2000280: regulation of root development. GO:1901601: strigolactone biosynthetic process.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os02g0699000	LOC_Os02g47090.1				GO:0051302 - regulation of cell division, GO:0005215 - transporter activity, GO:0009690 - cytokinin metabolic process, GO:0009736 - cytokinin mediated signaling, GO:0051726 - regulation of cell cycle, GO:0048364 - root development, GO:0080055 - low affinity nitrate transport, GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane	TO:0002660 - cytokinin content, TO:0000011 - nitrogen sensitivity, TO:0000207 - plant height, TO:0000578 - root fresh weight, TO:0000078 - root dry weight, TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000656 - root development trait, TO:0000084 - root number, TO:0000227 - root length	PO:0009005 - root , PO:0007520 - root development stage 
21456	XOAT13	OsTBL1, TBL1, OsXOAT13	XYLAN O-ACETYLTRANSFERASE 13	trichome birefringence-like 1, xylan O-acetyltransferase 13	XYLAN O-ACETYLTRANSFERASE 13	ostbl1, tbl1	12	LOC_Os12g01560. MH037027. GO:0071554: cell wall organization or biogenesis.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Biochemical character	Os12g0106300	LOC_Os12g01560.1				GO:0042545 - cell wall modification, GO:0016413 - O-acetyltransferase activity, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus	TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance	
21457	XOAT12	OsTBL2, TBL2, OsXOAT12	XYLAN O-ACETYLTRANSFERASE 12	trichome birefringence-like 2, xylan O-acetyltransferase 12	XYLAN O-ACETYLTRANSFERASE 12	ostbl2, tbl2	11	LOC_Os11g01570. MH037026. GO:0071554: cell wall organization or biogenesis.	 Vegetative organ - Culm,  Biochemical character	Os11g0107000	LOC_Os11g01570.1				GO:0016021 - integral to membrane, GO:0042545 - cell wall modification, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity	TO:0000207 - plant height	
21458	XOAT14	OsTBL3, TBL3, OsXOAT14	XYLAN O-ACETYLTRANSFERASE 14	trichome birefringence-like 3, xylan O-acetyltransferase 14	XYLAN O-ACETYLTRANSFERASE 14		3	LOC_Os03g60300. MH037028. GO:1990538: xylan O-acetyltransferase activity. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0817500	LOC_Os03g60300.1				GO:0016021 - integral to membrane, GO:0045492 - xylan biosynthetic process, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21459	XOAT9	OsTBL4, TBL4, OsXOAT9	XYLAN O-ACETYLTRANSFERASE 9	trichome birefringence-like 4, xylan O-acetyltransferase 9	XYLAN O-ACETYLTRANSFERASE 9		5	LOC_Os05g28830. MH037023. GO:1990538: xylan O-acetyltransferase activity. GO:0071554: cell wall organization or biogenesis. GO:1990937:xylan acetylation.	 Biochemical character	Os05g0356700	LOC_Os05g28830.1				GO:0009834 - secondary cell wall biogenesis, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21460	XOAT10	OsTBL5, TBL5, OsXOAT10	XYLAN O-ACETYLTRANSFERASE 10	trichome birefringence-like 5, xylan O-acetyltransferase 10	XYLAN O-ACETYLTRANSFERASE 10		3	LOC_Os03g60350. MH037024. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0817900	LOC_Os03g60350.1				GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21461	XOAT11	OsTBL6, TBL6, OsXOAT11	XYLAN O-ACETYLTRANSFERASE 11	trichome birefringence-like 6, xylan O-acetyltransferase 11	XYLAN O-ACETYLTRANSFERASE 11		3	LOC_Os03g60340. MH037025. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0817800	LOC_Os03g60340.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21462	_	OsTBL7, TBL7	_	trichome birefringence-like 7			4	LOC_Os04g58340. 			LOC_Os04g58340						
21463	XOAT8	OsTBL8, TBL8, OsXOAT8	XYLAN O-ACETYLTRANSFERASE 8	trichome birefringence-like 8, xylan O-acetyltransferase 8	XYLAN O-ACETYLTRANSFERASE 8		3	LOC_Os03g18120. MH037022. GO:1990538: xylan O-acetyltransferase activity. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0291200	LOC_Os03g18120.1				GO:0016413 - O-acetyltransferase activity, GO:0030244 - cellulose biosynthetic process, GO:0045489 - pectin biosynthetic process, GO:0009827 - plant-type cell wall modification, GO:0045492 - xylan biosynthetic process, GO:0005886 - plasma membrane, GO:0005794 - Golgi apparatus		
21464	XOAT3	OsTBL9, TBL9, OsXOAT3	XYLAN O-ACETYLTRANSFERASE 3	trichome birefringence-like 9, xylan O-acetyltransferase 3	XYLAN O-ACETYLTRANSFERASE 3		12	LOC_Os12g01380. MH037017. GO:0071554: cell wall organization or biogenesis.	 Biochemical character,  Vegetative organ - Leaf	Os12g0104700	LOC_Os12g01380.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity	TO:0002681 - leaf curling	
21465	XOAT4	OsTBL10, TBL10, OsXOAT4	XYLAN O-ACETYLTRANSFERASE 4	trichome birefringence-like 10, xylan O-acetyltransferase 4	XYLAN O-ACETYLTRANSFERASE 4		11	LOC_Os11g01370. MH037018. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os11g0104800	LOC_Os11g01370.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21466	XOAT2	OsTBL11, TBL11, OsXOAT2	XYLAN O-ACETYLTRANSFERASE 2	trichome birefringence-like 11, xylan O-acetyltransferase 2	XYLAN O-ACETYLTRANSFERASE 2		5	LOC_Os05g39350. MH037016. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os05g0470000	LOC_Os05g39350.1				GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21467	XOAT1	OsTBL12, TBL12, OsXOAT1	XYLAN O-ACETYLTRANSFERASE 1	trichome birefringence-like 12, xylan O-acetyltransferase 1	XYLAN O-ACETYLTRANSFERASE 1		1	LOC_Os01g61460. MH037015. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os01g0830700	LOC_Os01g61460.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity		
21468	XOAT5	OsTBL13, TBL13, OsXOAT5	XYLAN O-ACETYLTRANSFERASE 5	trichome birefringence-like 13, xylan O-acetyltransferase 5	XYLAN O-ACETYLTRANSFERASE 5		5	LOC_Os05g28630. MH037019. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os05g0354400	LOC_Os05g28630.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
21469	XOAT7	OsTBL14, TBL14, OsXOAT7	XYLAN O-ACETYLTRANSFERASE 7	trichome birefringence-like 14, xylan O-acetyltransferase 7	XYLAN O-ACETYLTRANSFERASE 7		7	LOC_Os07g49280. MH037021. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os07g0693600	LOC_Os07g49280.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21470	XOAT6	OsTBL15, TBL15, OsXOAT6	XYLAN O-ACETYLTRANSFERASE 6	trichome birefringence-like 15, xylan O-acetyltransferase 6	XYLAN O-ACETYLTRANSFERASE 6		3	LOC_Os03g18140. MH037020. GO:0071554: cell wall organization or biogenesis. GO:1990937: xylan acetylation.	 Biochemical character	Os03g0291800	LOC_Os03g18140.1				GO:0016413 - O-acetyltransferase activity, GO:0050826 - response to freezing, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21471	_	OsTBL16, TBL16	_	trichome birefringence-like 16			1	LOC_Os01g42810. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0614300	LOC_Os01g42810.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21472	_	OsTBL17, TBL17	_	trichome birefringence-like 17			5	LOC_Os05g51020. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os05g0587700	LOC_Os05g51020.2				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21473	_	OsTBL18, TBL18	_	trichome birefringence-like 18			3	LOC_Os03g18110. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0290900	LOC_Os03g18110.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21474	_	OsTBL19, TBL19	_	trichome birefringence-like 19			1	LOC_Os01g11810. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0217000	LOC_Os01g11810.1, LOC_Os01g11810.2				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21475	_	OsTBL20, TBL20	_	trichome birefringence-like 20			6	LOC_Os06g34060. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0531400	LOC_Os06g34060.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21476	_	OsTBL21, TBL21	_	trichome birefringence-like 21			1	LOC_Os01g46350. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0652100	LOC_Os01g46350.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21477	_	OsTBL22, TBL22	_	trichome birefringence-like 22			11	LOC_Os11g05080. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os11g0148200	LOC_Os11g05080.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21478	_	OsTBL23, TBL23	_	trichome birefringence-like 23			12	LOC_Os12g05080. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os12g0145400	LOC_Os12g05080.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21479	_	OsTBL24, TBL24	_	trichome birefringence-like 24			7	LOC_Os07g46230. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0656000	LOC_Os07g46230.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21480	_	OsTBL25, TBL25	_	trichome birefringence-like 25			1	LOC_Os01g30970. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0495200	LOC_Os01g30970.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21481	_	OsTBL26, TBL26	_	trichome birefringence-like 26			1	LOC_Os01g65800. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0880400	LOC_Os01g65800.1				GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21482	_	OsTBL27, TBL27	_	trichome birefringence-like 27			5	LOC_Os05g35190. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os05g0426300	LOC_Os05g35190.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21483	_	OsTBL28, TBL28	_	trichome birefringence-like 28			3	LOC_Os03g19470. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os03g0307700	LOC_Os03g19470.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21484	_	OsTBL29, TBL29	_	trichome birefringence-like 29			6	LOC_Os06g44900. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0659400	LOC_Os06g44900.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21485	_	OsTBL30, TBL30	_	trichome birefringence-like 30			4	LOC_Os04g42900. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os04g0508000	LOC_Os04g42900.1				GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21486	_	OsTBL31, TBL31	_	trichome birefringence-like 31			2	LOC_Os02g53380. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0773732	LOC_Os02g53380.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21487	_	OsTBL32, TBL32	_	trichome birefringence-like 32			6	LOC_Os06g10560. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0207500	LOC_Os06g10560.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21488	_	OsTBL33, TBL33	_	trichome birefringence-like 33			12	LOC_Os12g33194.		Os12g0516800	LOC_Os12g33194.1						
21489	_	OsTBL34, TBL34	_	trichome birefringence-like 34			12	LOC_Os12g36750.		Os12g0554100	LOC_Os12g36750.1, LOC_Os12g36750.2, LOC_Os12g36750.3						
21490	_	OsTBL35, TBL35	_	trichome birefringence-like 35			11	LOC_Os11g13800.		Os11g0241900	LOC_Os11g13800.1, LOC_Os11g13800.2, LOC_Os11g13800.3						
21491	_	OsTBL36, TBL36	_	trichome birefringence-like 36			9	LOC_Os09g23360.		Os09g0397400	LOC_Os09g23360.1, LOC_Os09g23360.2						
21492	_	OsTBL37, TBL37	_	trichome birefringence-like 37			7	LOC_Os07g31550. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0498900	LOC_Os07g31550.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21493	_	OsTBL38, TBL38	_	trichome birefringence-like 38			2	LOC_Os02g02580. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0117900	LOC_Os02g02580.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21494	_	OsTBL39, TBL39	_	trichome birefringence-like 39			1	LOC_Os01g68630. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0914800	LOC_Os01g68630.1				GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21495	_	OsTBL40, TBL40	_	trichome birefringence-like 40			6	LOC_Os06g12870. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0235200	LOC_Os06g12870.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21496	_	OsTBL41, TBL41	_	trichome birefringence-like 41			9	LOC_Os09g20850. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os09g0375300	LOC_Os09g20850.1				GO:0016413 - O-acetyltransferase activity, GO:0010411 - xyloglucan metabolic process, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
21497	_	OsTBL42, TBL42	_	trichome birefringence-like 42			6	LOC_Os06g12830. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234800	LOC_Os06g12830.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21498	_	OsTBL43, TBL43	_	trichome birefringence-like 43			6	LOC_Os06g12850. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0235000	LOC_Os06g12850.1				GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21499	_	OsTBL44, TBL44	_	trichome birefringence-like 44			6	LOC_Os06g12860. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0235100	LOC_Os06g12860.1				GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0016413 - O-acetyltransferase activity		
21500	_	OsTBL45, TBL45	_	trichome birefringence-like 45			6	LOC_Os06g12840. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234900	LOC_Os06g12840.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21501	_	OsTBL46, TBL46	_	trichome birefringence-like 46			7	LOC_Os07g15230. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0255900	LOC_Os07g15230.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21502	_	OsTBL47, TBL47	_	trichome birefringence-like 47			7	LOC_Os07g15320. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os07g0256700	LOC_Os07g15320.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21503	_	OsTBL48, TBL48	_	trichome birefringence-like 48			5	LOC_Os05g12380. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os05g0214900	LOC_Os05g12380.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21504	_	OsTBL49, TBL49	_	trichome birefringence-like 49			6	LOC_Os06g33330. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0524400	LOC_Os06g33330.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21505	_	OsTBL50, TBL50	_	trichome birefringence-like 50			6	LOC_Os06g12800. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234300	LOC_Os06g12800.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
21506	_	OsTBL51, TBL51	_	trichome birefringence-like 51			6	LOC_Os06g12810. 		Os06g0234400	LOC_Os06g12810.1						
21507	_	OsTBL52, TBL52	_	trichome birefringence-like 52			6	LOC_Os06g12820. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0234600	LOC_Os06g12820.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21508	_	OsTBL53, TBL53	_	trichome birefringence-like 53			4	LOC_Os04g39130. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os04g0465432	LOC_Os04g39130.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21509	_	OsTBL54, TBL54	_	trichome birefringence-like 54			2	LOC_Os02g49650. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0729100	LOC_Os02g49650.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21510	TBL55	OsTBL55, OsXyBAT3, XyBAT3	TRICHOME BIREFRINGENCE-LIKE 55	trichome birefringence-like 55, xyloglucan backbone O-acetyltransferase 3	TRICHOME BIREFRINGENCE-LIKE 55		2	MN996515. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os02g0729200	LOC_Os02g49660.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21511	TBL57	OsTBL57, OsXyBAT1, XyBAT1	TRICHOME BIREFRINGENCE-LIKE 57	trichome birefringence-like 57, xyloglucan backbone O-acetyltransferase 1	TRICHOME BIREFRINGENCE-LIKE 57		1	MN996513. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0652800	LOC_Os01g46400.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane		
21512	TBL58	OsTBL58, OsXyBAT2, XyBAT2	TRICHOME BIREFRINGENCE-LIKE 58	trichome birefringence-like 58, xyloglucan backbone O-acetyltransferase 2	TRICHOME BIREFRINGENCE-LIKE 58		1	MN996514. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os01g0653100	LOC_Os01g46410.1				GO:0016413 - O-acetyltransferase activity, GO:0005794 - Golgi apparatus		
21513	_	OsTBL59, TBL59	_	trichome birefringence-like 59			6	LOC_Os06g16200. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0273200	LOC_Os06g16200.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21514	TBL61	OsTBL61, OsXyBAT5, XyBAT5	TRICHOME BIREFRINGENCE-LIKE 61	trichome birefringence-like 61, xyloglucan backbone O-acetyltransferase 5	TRICHOME BIREFRINGENCE-LIKE 61		6	MN996517. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0272900	LOC_Os06g16170.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21515	_	OsTBL62, TBL62	_	trichome birefringence-like 62			6	LOC_Os06g15560. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0266000	LOC_Os06g15560.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21516	TBL63	OsTBL63, OsXyBAT6, XyBAT6	TRICHOME BIREFRINGENCE-LIKE 63	trichome birefringence-like 63, xyloglucan backbone O-acetyltransferase 6	TRICHOME BIREFRINGENCE-LIKE 63		11	MN996518. GO:0071554: cell wall organization or biogenesis.	 Biochemical character,  Character as QTL - Plant growth activity	Os11g0586800	LOC_Os11g37630.1				GO:0010411 - xyloglucan metabolic process, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0001558 - regulation of cell growth, GO:0005794 - Golgi apparatus	TO:0000357 - growth and development trait	
21517	TBL64	OsTBL64, OsXyBAT7, XyBAT7	TRICHOME BIREFRINGENCE-LIKE 64	trichome birefringence-like 64, xyloglucan backbone O-acetyltransferase 7	TRICHOME BIREFRINGENCE-LIKE 64		6	MN996519. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0272700	LOC_Os06g16150.1				GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus		
21518	_	OsTBL65, TBL65	_	trichome birefringence-like 65			6	CT828123. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0272800/Os06g0272850	LOC_Os06g16160.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21519	_	OsTBL66, TBL66	_	trichome birefringence-like 66			6	LOC_Os06g15580. 		Os06g0266133	LOC_Os06g15580.1						
21520	_	OsTBL56, TBL56	_	trichome birefringence-like 56			6	LOC_Os06g16250. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0273700	LOC_Os06g16250.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity, GO:0016021 - integral to membrane		
21521	TBL60	OsTBL60, OsXyBAT4, XyBAT4	TRICHOME BIREFRINGENCE-LIKE 60	trichome birefringence-like 60, xyloglucan backbone O-acetyltransferase 4	TRICHOME BIREFRINGENCE-LIKE 60		6	MN996516. GO:0071554: cell wall organization or biogenesis.	 Biochemical character	Os06g0273500	LOC_Os06g16240.1				GO:0005794 - Golgi apparatus, GO:0016413 - O-acetyltransferase activity		
21522	BPH32	Bph32	BROWN PLANTHOPPER RESISTANCE 32	BPH resistance 32			6	LOC_Os06g03240. a unique short consensus repeat (SCR) domain protein.	 Tolerance and resistance - Insect resistance	Os06g0123200	LOC_Os06g03240.1				GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	PO:0020104 - leaf sheath 
21523	TCD10	OsTCD10	THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT 10	thermo-sensitive chlorophyll-deficient 10		tcd10	10	a Pentatricopeptide Repeat Gene. TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os10g0421800	LOC_Os10g28600.1				GO:0009507 - chloroplast, GO:0009767 - photosynthetic electron transport chain, GO:0009409 - response to cold, GO:0009658 - chloroplast organization	TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0002715 - chloroplast development trait, TO:0000303 - cold tolerance	PO:0025034 - leaf 
21525	RLK5 	OsRLK5	_				2	LOC_Os02g13430.	 Tolerance and resistance - Stress tolerance	Os02g0227700	LOC_Os02g13430.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21526	CRR1		COMPROMISED RESISTANCE TO RUST 1  	compromised resistance to rust 1		crr1	10	non-host resistance (NHR) to Puccinia striiformis f. sp. tritici (Pst) (which is the causal agent of wheat stripe rust). The Crr1 locus was putatively mapped to the long arm of chromosome 10 and was linked to SSR marker RM25761. Composite interval mapping (CIM) placed Crr1 between markers Id14 and RM25792.	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000112 - disease resistance	
21527	LCB2A1	OsLCB2a1, LCB2a1	_	serine palmitoyltransferase subunit LCBa1, serine palmitoyltransferase LCBa1 subunit			1	LOC_Os01g70380. Q5JK39.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os01g0928800	LOC_Os01g70380.1				GO:0030170 - pyridoxal phosphate binding, GO:0080027 - response to herbivore, GO:0030148 - sphingolipid biosynthetic process, GO:0002213 - defense response to insect, GO:0009863 - salicylic acid mediated signaling pathway, GO:0004758 - serine C-palmitoyltransferase activity, GO:0005789 - endoplasmic reticulum membrane, GO:0006665 - sphingolipid metabolic process, GO:0009058 - biosynthetic process, GO:0016021 - integral to membrane	TO:0000424 - brown planthopper resistance, TO:0000236 - crop damage resistance	
21528	LCB2A2	OsLCB2a2, LCB2a2	_	serine palmitoyltransferase subunit LCBa2, serine palmitoyltransferase LCBa2 subunit			1	LOC_Os01g70370. Q8RYL0.	 Biochemical character	Os01g0928700	LOC_Os01g70370.1				GO:0006665 - sphingolipid metabolic process, GO:0009058 - biosynthetic process, GO:0016021 - integral to membrane, GO:0004758 - serine C-palmitoyltransferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0005789 - endoplasmic reticulum membrane		
21529	LCB2A3	OsLCB2a3, LCB2a3	_	serine palmitoyltransferase subunit LCBa3, serine palmitoyltransferase LCBa3 subunit			11	LOC_Os11g31640. Q2R3K3.	 Biochemical character	Os11g0516000	LOC_Os11g31640.1				GO:0016021 - integral to membrane, GO:0006665 - sphingolipid metabolic process, GO:0030170 - pyridoxal phosphate binding, GO:0005789 - endoplasmic reticulum membrane, GO:0004758 - serine C-palmitoyltransferase activity, GO:0009058 - biosynthetic process		
21530	NSCC2	OsNSCC2	NONSELECTIVE CATION CHANNEL 2 	Nonselective Cation Channel 2	NONSELECTIVE CATION CHANNEL 2 		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0435000 	LOC_Os02g23890.1, LOC_Os02g23890.2				GO:0009651 - response to salt stress, GO:0055085 - transmembrane transport, GO:0008565 - protein transporter activity	TO:0006001 - salt tolerance	
21531	ARP1	OsARP1, OsDRM1, DRM1	AUXIN REPRESSED PROTEIN 1	auxin repressed protein 1, Dormancy-Associated Gene 1	AUXIN REPRESSED PROTEIN 1		11		 Character as QTL - Plant growth activity	Os11g0671000	LOC_Os11g44810.1, LOC_Os11g44810.2, LOC_Os11g44810.3					TO:0000163 - auxin sensitivity, TO:0000357 - growth and development trait	
21532	ASPG1 	OsASPG1	ASPARTIC PROTEASE IN GUARD CELL 1  	aspartic protease in guard cell 1	ASPARTIC PROTEASE IN GUARD CELL 1  		2			Os02g0721000					GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
21533	EIL1A	EIL1, OsEIL1, EIL1a, OsEIL1a, MHZ6/OsEIL1, MHZ6, OsMHZ6	ETHYLENE INSENSITIVE3-LIKE GENE 1A	ETHYLENE INSENSITIVE3-LIKE1, ETHYLENE INSENSITIVE3-LIKE 1, maohuzi6, maohuzi 6, EIN3-like protein 1A	EIN3-LIKE PROTEIN 1A	mhz6-1, mhz6-2, mhz6-3, oseil1, mhz6/Oseil1, eil1	3	DQ153245. Q10M41. a rice homolog of ETHYLENE INSENSITIVE3 (EIN3). GO:1901001: negative regulation of response to salt stress. GO:1900366: negative regulation of defense response to insect. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000280: regulation of root development. TO:0000975: grain width. GO:0080157: regulation of plant-type cell wall organization or biogenesis. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Tolerance and resistance - Insect resistance	Os03g0324300	LOC_Os03g20790.1				GO:0050832 - defense response to fungus, GO:0002213 - defense response to insect, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0042126 - nitrate metabolic process, GO:0005622 - intracellular, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0080006 - internode patterning, GO:0001666 - response to hypoxia, GO:0009723 - response to ethylene stimulus, GO:0031349 - positive regulation of defense response, GO:0048367 - shoot development, GO:0006950 - response to stress, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0003700 - transcription factor activity, GO:0052386 - cell wall thickening, GO:0071669 - plant-type cell wall organization or biogenesis, GO:0009873 - ethylene mediated signaling pathway, GO:0003677 - DNA binding, GO:0010167 - response to nitrate, GO:0048364 - root development	TO:0000168 - abiotic stress trait, TO:0000656 - root development trait, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance, TO:0000590 - grain weight, TO:0001007 - coleoptile length, TO:0002668 - jasmonic acid content, TO:0000476 - growth hormone content, TO:0006007 - polysaccharide content, TO:0006006 - monosaccharide content, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000397 - grain size, TO:0000592 - 1000-dehulled grain weight, TO:0000255 - sheath blight disease resistance, TO:0000227 - root length, TO:0000145 - internode length, TO:0002685 - crown root number, TO:0000015 - oxygen sensitivity, TO:0000654 - shoot development trait, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000207 - plant height, TO:0000019 - seedling height	PO:0025527 - shoot system development stage , PO:0007045 - coleoptile emergence stage , PO:0020033 - coleoptile , PO:0007030 - seedling shoot emergence stage , PO:0007131 - seedling development stage , PO:0007520 - root development stage 
21534	CCR4A	OsCCR4a	CARBON CATABOLITE REPRESSOR 4A 	Carbon catabolite repressor 4a	CARBON CATABOLITE REPRESSOR 4A 		10	LOC_Os10g27230.		Os10g0412100	LOC_Os10g27230.1, LOC_Os10g27230.2, LOC_Os10g27230.3				GO:0004519 - endonuclease activity, GO:0004527 - exonuclease activity, GO:0000932 - cytoplasmic mRNA processing body		
21535	CCR4B	OsCCR4b	CARBON CATABOLITE REPRESSOR 4B	Carbon catabolite repressor 4b	CARBON CATABOLITE REPRESSOR 4B		3	LOC_Os03g07080.		Os03g0166800	LOC_Os03g07080.1, LOC_Os03g07080.2, LOC_Os03g07080.3				GO:0004519 - endonuclease activity, GO:0004527 - exonuclease activity, GO:0000932 - cytoplasmic mRNA processing body		
21536	_	OsNOT1, NOT1	_	NOT1 homolog			10	LOC_Os10g40780.		Os10g0556700	LOC_Os10g40780.1, LOC_Os10g40780.3				GO:0016021 - integral to membrane		
21537	DT11	OsDT11	DROUGHT TOLERANCE 11 	drought tolerance 11			11	a cysteine-rich peptide.	 Tolerance and resistance - Stress tolerance	Os11g0211800	LOC_Os11g10590.1				GO:0009738 - abscisic acid mediated signaling, GO:0008200 - ion channel inhibitor activity, GO:0009405 - pathogenesis, GO:0009414 - response to water deprivation, GO:0005576 - extracellular region, GO:0006970 - response to osmotic stress	TO:0000566 - stomatal frequency, TO:0000615 - abscisic acid sensitivity, TO:0000478 - abscisic acid concentration, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity	
21538	_	Os2H16, 2H16	_				6	KC710214 (promoter sequence). KC710213.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0316000	LOC_Os06g21110.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
21539	RL14	2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24, OsRL14	ROLLING LEAF 14	Rolling-leaf14, Rolling-leaf 14, Rolling leaf 14, 2-oxoglutarate-dependent dioxygenase 24	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 24	rl14, rl14-1, rl14-2	10	a 2OG-Fe (II) oxygenase family protein. GO:2000652: regulation of secondary cell wall biogenesis.	 Biochemical character,  Vegetative organ - Leaf	Os10g0558900	LOC_Os10g40960.1				GO:0046872 - metal ion binding, GO:0009834 - secondary cell wall biogenesis, GO:0006833 - water transport, GO:0051213 - dioxygenase activity	TO:0000085 - leaf rolling, TO:0002641 - acid detergent fiber, TO:0001018 - transpiration rate	PO:0004006 - mesophyll cell , PO:0005427 - sclerenchyma 
21540	_	OsCPP5, CPP5	_				5	LOC_Os05g43380.	 Other	Os05g0509400	LOC_Os05g43380.1, LOC_Os05g43380.2				GO:0045892 - negative regulation of transcription, DNA-dependent		
21541	NLP2	OsNLP2	NIN-LIKE PROTEIN 2	OsNIN-like2, OsNIN-like 2, NIN-like2, NIN-like 2, NLP transcription factor 2, NODULE INCEPTION-like protein 2	NIN-LIKE PROTEIN 2	Osnlp2	4	Q0JC27. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation. GO:0097468: programmed cell death in response to reactive oxygen species.	 Other,  Character as QTL - Germination,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0495800	LOC_Os04g41850.1				GO:0009610 - response to symbiotic fungus, GO:0009620 - response to fungus, GO:0010167 - response to nitrate, GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0003677 - DNA binding, GO:0009845 - seed germination, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009735 - response to cytokinin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0042594 - response to starvation, GO:0006351 - transcription, DNA-dependent, GO:0009408 - response to heat, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0031348 - negative regulation of defense response, GO:0043069 - negative regulation of programmed cell death, GO:0009626 - plant-type hypersensitive response, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000430 - germination rate, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity	PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage , PO:0009005 - root 
21542	NLP3	OsNLP3	NIN-LIKE PROTEIN 3	OsNIN-like3, OsNIN-like 3, NIN-like3, NIN-like 3, NLP transcription factor 3, NODULE INCEPTION-like protein 3	NIN-LIKE PROTEIN 3	nlp3, nlp3-2, nlp3-3	1	Q5NB82. the central transcription factor of nitrate signalling. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation. TO:0000975: grain width.	 Character as QTL - Grain quality,  Other,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Seed - Morphological traits - Endosperm,  Character as QTL - Yield and productivity	Os01g0236700	LOC_Os01g13540.1				GO:0006351 - transcription, DNA-dependent, GO:0007584 - response to nutrient, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0048316 - seed development, GO:0051781 - positive regulation of cell division, GO:0030307 - positive regulation of cell growth, GO:0009960 - endosperm development, GO:0010581 - regulation of starch biosynthetic process, GO:0009735 - response to cytokinin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0042594 - response to starvation, GO:0060359 - response to ammonium ion, GO:0010167 - response to nitrate, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009620 - response to fungus, GO:0009610 - response to symbiotic fungus, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000590 - grain weight, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000480 - nutrient sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000397 - grain size, TO:0002658 - starch grain synthesis, TO:0000346 - tiller number, TO:0000259 - heat tolerance, TO:0000653 - seed development trait, TO:0000266 - chalky endosperm, TO:0000011 - nitrogen sensitivity, TO:0000598 - protein content, TO:0000696 - starch content	PO:0001170 - seed development stage , PO:0007633 - endosperm development stage , PO:0009005 - root , PO:0007022 - seed imbibition stage 
21543	NLP5	OsNLP5, NLP5.1, NLP5.2, NLP5.3, NLP5.4, NLP5.5	NIN-LIKE PROTEIN 5	OsNIN-like4, OsNIN-like 4, NIN-like4, NIN-like 4, NLP transcription factor 5, NODULE INCEPTION-like protein 5	NIN-LIKE PROTEIN 5		11	GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation.	 Tolerance and resistance - Stress tolerance,  Other	Os11g0264300	LOC_Os11g16290.3, LOC_Os11g16290.2, LOC_Os11g16290.1, LOC_Os11g16290.4, LOC_Os11g16290.5				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0010167 - response to nitrate, GO:0009414 - response to water deprivation, GO:0009610 - response to symbiotic fungus, GO:0005634 - nucleus, GO:0009620 - response to fungus, GO:0042594 - response to starvation, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0007022 - seed imbibition stage , PO:0009005 - root 
21544	_	RMP2	_	rice microspore-preferred 2			4	LOC_Os04g47400.	 Biochemical character	Os04g0561900	LOC_Os04g47400.1				GO:0009506 - plasmodesma, GO:0009505 - plant-type cell wall, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding, GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
21545	_	RMP3	_	rice microspore-preferred 3			12	LOC_Os12g41260. GO:0035556: intracellular signal transduction.		Os12g0605900	LOC_Os12g41260.1				GO:0004672 - protein kinase activity, GO:0009556 - microsporogenesis, GO:0005524 - ATP binding, GO:0004871 - signal transducer activity, GO:0006468 - protein amino acid phosphorylation, GO:0005622 - intracellular		PO:0001007 - pollen development stage 
21546	_	RMP4	_	rice microspore-preferred 4											GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
21547	_	RMP5	_	rice microspore-preferred 5			12	LOC_Os12g44080.		Os12g0637900	LOC_Os12g44080.1				GO:0009556 - microsporogenesis		PO:0001007 - pollen development stage 
21548	_	RMP6	_	rice microspore-preferred 6			1	LOC_Os01g67350.	 Biochemical character	Os01g0899100	LOC_Os01g67350.1				GO:0009556 - microsporogenesis, GO:0008234 - cysteine-type peptidase activity		PO:0001007 - pollen development stage 
21549	RMP8	OsRMP8	RICE MICROSPORE-PREFERRED 8	rice microspore-preferred 8			7	Momilactone A synthase-like. BGIOSGA026341 (indica).	 Tolerance and resistance - Insect resistance,  Biochemical character	Os07g0664600	LOC_Os07g46950.2, LOC_Os07g46950.3, LOC_Os07g46950.4				GO:0019290 - siderophore biosynthetic process, GO:0008667 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase activity, GO:0002215 - defense response to nematode, GO:0009556 - microsporogenesis	TO:0000384 - nematode damage resistance	PO:0001007 - pollen development stage 
21550	_	RMP9	_	rice microspore-preferred 9			3	LOC_Os03g26430.	 Biochemical character	Os03g0381000	LOC_Os03g26430.1				GO:0006006 - glucose metabolic process, GO:0030246 - carbohydrate binding, GO:0009556 - microsporogenesis, GO:0004034 - aldose 1-epimerase activity, GO:0033499 - galactose catabolic process via UDP-galactose		PO:0001007 - pollen development stage 
21551	_	OsPsbR2, PsbR2	_	PSII subunit PsbR2, photosystem II subunit PsbR2			7	a 10 kDa Photosystem II polypeptide.  eukaryotic photosystem II oxygen-evolving complex subunit. LOC_Os07g05365.	 Biochemical character	Os07g0147550	LOC_Os07g05365.1				GO:0009654 - oxygen evolving complex, GO:0015979 - photosynthesis, GO:0016021 - integral to membrane		
21552	CYO1	OsCYO1	_	cotyledon chloroplast biogenesis factor CYO1			9	an ortholog of Arabidopsis thaliana cotyledon chloroplast biogenesis factor AtCYO1. 	 Biochemical character,  Coloration - Chlorophyll	Os09g0458400 	LOC_Os09g28480.1, LOC_Os09g28480.2				GO:0009658 - chloroplast organization, GO:0003756 - protein disulfide isomerase activity, GO:0009535 - chloroplast thylakoid membrane	TO:0000326 - leaf color, TO:0000244 - coleoptile color, TO:0000316 - photosynthetic ability	
21553	PKS1 	OsPKS01, PKS01, OsPKS1, OsCHS1, CHS1	POLYKETIDE SYNTHASE 1	polyketide synthase 1, Chalcone synthase 1	POLYKETIDE SYNTHASE 1		1		 Biochemical character	Os01g0602600	LOC_Os01g41834.1				GO:0030639 - polyketide biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009813 - flavonoid biosynthetic process		
21554	PKS3	OsPKS03, PKS03, OsPKS3, OsCHS3, CHS3	POLYKETIDE SYNTHASE 3	polyketide synthase 3, Chalcone synthase 3	POLYKETIDE SYNTHASE 3		4		 Biochemical character	Os04g0304600	LOC_Os04g23940.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009813 - flavonoid biosynthetic process, GO:0030639 - polyketide biosynthetic process		
21555	PKS4	OsPKS04, PKS04, OsPKS4, OsCHS4, CHS4	POLYKETIDE SYNTHASE 4	polyketide synthase 4, Chalcone synthase 4	POLYKETIDE SYNTHASE 4		5		 Biochemical character	Os05g0212500	LOC_Os05g12180.1				GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21556	PKS5	OsPKS05, PKS05, OsPKS5, OsCHS5, CHS5	POLYKETIDE SYNTHASE 5	polyketide synthase 5, Chalcone synthase 5	POLYKETIDE SYNTHASE 5		5		 Biochemical character	Os05g0212600	LOC_Os05g12190.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009813 - flavonoid biosynthetic process, GO:0030639 - polyketide biosynthetic process		
21557	PKS7	OsPKS07, PKS07, OsPKS7, OsCHS7, CHS7	POLYKETIDE SYNTHASE 7	polyketide synthase 7, Chalcone synthase 7	POLYKETIDE SYNTHASE 7		5		 Biochemical character	Os05g0213100	LOC_Os05g12240.1				GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016021 - integral to membrane, GO:0030639 - polyketide biosynthetic process		
21558	PKS9	OsPKS09, PKS09, OsPKS9, OsCHS9, CHS9	POLYKETIDE SYNTHASE 9	polyketide synthase 9, Chalcone synthase 9	POLYKETIDE SYNTHASE 9		7	Q8LIL0. GO:0102452: bisdemethoxycurcumin synthase activity.	 Biochemical character	Os07g0271500	LOC_Os07g17010.1				GO:0042802 - identical protein binding, GO:0009813 - flavonoid biosynthetic process, GO:0030639 - polyketide biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0009010 - seed , PO:0025034 - leaf 
21559	PKS10	OsPKS10, OsPKS2, PKS2, OsCHS10, CHS10	POLYKETIDE SYNTHASE 10	polyketide synthase 10, polyketide synthase 2, Chalcone synthase 10	POLYKETIDE SYNTHASE 10	ospks2, ospks2-1, ospks2-2, ospks2-3	7	the rice orthologous gene of Arabidopsis PKSB/LAP5. OsPKS2 in Zhu et al. 2017, Zou et al. 2018, Peng et al. 2019, Han et al. 2021, Xu et al. 2022, Han et al. 2023. GO:0061458: reproductive system development. PO:0030123: panicle inflorescence. GO:0090439: tetraketide alpha-pyrone synthase activity. 	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0411300	LOC_Os07g22850.1				GO:0010584 - pollen exine formation, GO:0010208 - pollen wall assembly, GO:0009555 - pollen development, GO:0009735 - response to cytokinin stimulus, GO:0019953 - sexual reproduction, GO:0005783 - endoplasmic reticulum, GO:0030639 - polyketide biosynthetic process, GO:0080110 - sporopollenin biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000437 - male sterility, TO:0000167 - cytokinin sensitivity	PO:0001007 - pollen development stage , PO:0009066 - anther , PO:0009071 - anther wall tapetum , PO:0009046 - flower , PO:0009049 - inflorescence 
21560	PKS11	OsPKS11, OsCHS11, CHS11	POLYKETIDE SYNTHASE 11	polyketide synthase 11, Chalcone synthase 11	POLYKETIDE SYNTHASE 11		7		 Biochemical character	Os07g0500800	LOC_Os07g31750.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0030639 - polyketide biosynthetic process		
21561	PKS13	OsPKS13, OsCHS13, CHS13	POLYKETIDE SYNTHASE 13	polyketide synthase 13, Chalcone synthase 13	POLYKETIDE SYNTHASE 13		7		 Biochemical character	Os07g0525500	LOC_Os07g34140.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0030639 - polyketide biosynthetic process	TO:0000172 - jasmonic acid sensitivity	PO:0009006 - shoot system , PO:0025034 - leaf 
21562	PKS14	OsPKS14, OsCHS14, CHS14	POLYKETIDE SYNTHASE 14	polyketide synthase 14, Chalcone synthase 14	POLYKETIDE SYNTHASE 14		7		 Biochemical character	Os07g0525900	LOC_Os07g34190.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	PO:0009006 - shoot system 
21563	PKS15	OsPKS15, OsCHS15, CHS15	POLYKETIDE SYNTHASE 15	polyketide synthase 15, Chalcone synthase 15	POLYKETIDE SYNTHASE 15		7		 Biochemical character	Os07g0526400	LOC_Os07g34260.1				GO:0030639 - polyketide biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009741 - response to brassinosteroid stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0002677 - brassinosteroid sensitivity	PO:0009006 - shoot system 
21564	PKS16	OsPKS16, OsCHS16, CHS16	POLYKETIDE SYNTHASE 16	polyketide synthase 16, Chalcone synthase 16	POLYKETIDE SYNTHASE 16		10		 Biochemical character	Os10g0158400	LOC_Os10g07040.1				GO:0009735 - response to cytokinin stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0030639 - polyketide biosynthetic process	TO:0000167 - cytokinin sensitivity	
21565	PKS17	OsPKS17, OsCHS17, CHS17	POLYKETIDE SYNTHASE 17	polyketide synthase 17, Chalcone synthase 17	POLYKETIDE SYNTHASE 17		10		 Biochemical character	Os10g0162856	LOC_Os10g07616.1				GO:0030639 - polyketide biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009813 - flavonoid biosynthetic process		
21566	PKS18	OsPKS18, OsCHS18, CHS18	POLYKETIDE SYNTHASE 18	polyketide synthase 18, Chalcone synthase 18	POLYKETIDE SYNTHASE 18		10		 Biochemical character	Os10g0167900	LOC_Os10g08620.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity	PO:0025034 - leaf , PO:0009047 - stem , PO:0009046 - flower 
21567	PKS19	OsPKS19, OsCHS20, CHS20	POLYKETIDE SYNTHASE 19	polyketide synthase 19, chalcone synthase 20	POLYKETIDE SYNTHASE 19		10	LOC_Os10g08710. 	 Biochemical character	Os10g0168500	LOC_Os10g08680.1, LOC_Os10g08710.1				GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
21568	PKS20	OsPKS20, OsCHS21, CHS21	POLYKETIDE SYNTHASE 20	polyketide synthase 20, Chalcone synthase 21	POLYKETIDE SYNTHASE 20		10		 Biochemical character	Os10g0177300	LOC_Os10g09860.1				GO:0030639 - polyketide biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009813 - flavonoid biosynthetic process		
21569	PKS22	OsPKS22, OsCHS28, CHS28	POLYKETIDE SYNTHASE 22	polyketide synthase 22, Chalcone synthase 28	POLYKETIDE SYNTHASE 22		11		 Biochemical character	Os11g0529036/Os11g0529125	LOC_Os11g32540.1				GO:0008152 - metabolic process, GO:0003824 - catalytic activity		
21570	PKS23	OsPKS23, OsCHS29, CHS29, OsCHS24, CHS24	POLYKETIDE SYNTHASE 23	polyketide synthase 23, Chalcone synthase 29	POLYKETIDE SYNTHASE 23		11	OsCHS24 in Wang et al. 2022.	 Biochemical character	Os11g0529500	LOC_Os11g32580.1				GO:0009813 - flavonoid biosynthetic process, GO:0030639 - polyketide biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0009049 - inflorescence 
21571	PKS24	OsPKS24, OsCHS30, CHS30, OsCHS25, CHS25	POLYKETIDE SYNTHASE 24	polyketide synthase 24, Chalcone synthase 30	POLYKETIDE SYNTHASE 24		11	OsCHS25 in Wang et al. 2022.	 Biochemical character	Os11g0529800	LOC_Os11g32610.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process		PO:0009049 - inflorescence 
21572	PKS25	OsPKS25, OsCHS23, CHS23, OsCHS26, CHS26	POLYKETIDE SYNTHASE 25	polyketide synthase 25, Chalcone synthase 23	POLYKETIDE SYNTHASE 25		11	OsCHS26 in Wang et al. 2022.	 Biochemical character	Os11g0529900	LOC_Os11g32620.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009813 - flavonoid biosynthetic process, GO:0030639 - polyketide biosynthetic process, GO:0016021 - integral to membrane		PO:0009046 - flower , PO:0025034 - leaf , PO:0009047 - stem 
21573	PKS27	OsPKS27, OsCHS25, CHS25, OsCHS28, CHS28	POLYKETIDE SYNTHASE 27	polyketide synthase 27, Chalcone synthase 25	POLYKETIDE SYNTHASE 27		11	OsCHS28 in Wang et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0566800	LOC_Os11g35930.1				GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000303 - cold tolerance	
21574	PHR4	OsPHR4, Os-PHR4	PHOSPHATE STARVATION RESPONSE 4	Phosphate Starvation Response4, PHOSPHATE RESPONSE4			6	TO:0020102: phosphate content. LOC_Os06g49040.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os06g0703900 	LOC_Os06g49040.1				GO:0055062 - phosphate ion homeostasis, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0048767 - root hair elongation, GO:0055081 - anion homeostasis	TO:0002665 - root hair length, TO:0000168 - abiotic stress trait	PO:0007519 - 5 root hair formation stage , PO:0005020 - vascular bundle , PO:0000034 - vascular system , PO:0000016 - lateral root primordium , PO:0000025 - root tip , PO:0020124 - root stele 
21575	LO9-177	OsLO9-177	_	small KxDL motif-containing protein LO9-177			3	a novel OsBUL1-interacting protein. a KxDL motif-containing protein. a component of the trimeric complex consisting of OsBUL1, LO9-177, and OsBC1.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf	Os03g0640400	LOC_Os03g43910.1				GO:0009826 - unidimensional cell growth	TO:0000206 - leaf angle, TO:0002687 - cell elongation trait, TO:0000397 - grain size	
21576	_	OsBUL3, BUL3, OsbHLH174, bHLH174	_	BRASSINOSTEROID UPREGULATED 1-LIKE3, BRASSINOSTEROID UPREGULATED 1-LIKE 3, basic helix-loop-helix protein 174			10	LOC_Os10g26410.	 Vegetative organ - Leaf	Os10g0403800	LOC_Os10g26410.1				GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000206 - leaf angle	
21577	_	LBD12-1	_	LBD family transcription factor 12-1, lateral organ boundaries domain protein 12-1		lbd12-1, lbd12-1a, lbd12-1b	12	LOC_Os12g01550. GO:1902184: negative regulation of shoot apical meristem development.	 Vegetative organ - Shoot apical meristem(SAM)	Os12g0106200	LOC_Os12g01550.1				GO:0048653 - anther development, GO:0040007 - growth	TO:0000214 - anther shape, TO:0000215 - stamen anatomy and morphology trait, TO:0000492 - leaf shape, TO:0000515 - relative growth rate, TO:0006020 - shoot apical meristem development	PO:0001004 - anther development stage 
21578	_	LBD11-1	_	LBD family transcription factor 11-1, lateral organ boundaries domain protein 11-1		lbd11-1, lbd11-1a, lbd11-1b	11	LOC_Os11g01550.		Os11g0106900	LOC_Os11g01550.1						
21579	_	OsCER2, CER2, HMS1I, OsHMS1I, OsCER26L, CER26L	_	ECERIFERUM2, ECERIFERUM 2, HMS1-INTERACTING PROTEIN, ECERIFERUM 26-like		cer2	4	LOC_Os04g52164  (Os04g0611200/Os04g0611267). a homolog of Arabidopsis CER2.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os04g0611200	LOC_Os04g52164.1, LOC_Os04g52164.2				GO:0010025 - wax biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0009270 - response to humidity, GO:0010166 - wax metabolic process	TO:0000199 - genic male sterility, TO:0000441 - humidity related trait	PO:0009066 - anther 
21580	SGL	OsSGL	STRESS_TOLERANCE AND GRAIN_LENGTH	STRESS_tolerance and GRAIN_LENGTH			2	a putative member of the DUF1645 protein family. GO:2000693: positive regulation of seed maturation.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os02g0134200	LOC_Os02g04130.1				GO:0010431 - seed maturation, GO:0051781 - positive regulation of cell division, GO:0001558 - regulation of cell growth, GO:0009628 - response to abiotic stimulus, GO:0009736 - cytokinin mediated signaling	TO:0000167 - cytokinin sensitivity, TO:0000447 - filled grain number, TO:0002661 - seed maturation, TO:0000168 - abiotic stress trait, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000590 - grain weight	PO:0007632 - seed maturation stage 
21581	PMS1	PMS1T	PHOTOPHERIOD-SENSETIVE GENIC MALE STERILITY 1	photopheriod-sensetive genic male sterility 1, long-noncoding RNA PMS1T		Pms1	7	The nearest predicted genes, LOC_07g12010 and LOC_07g12020, were ~7.7- and 15.0-kb apart, respectively. A full-length cDNA AK242308 on the anti- sense chain was 1,139-bp apart. PMS1T was predicted to be targeted by miR2118. (Fan et al. 2016).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0030422 - production of siRNA involved in RNA interference	TO:0000009 - genic male sterility-photoperiod sensitive	
21582	_	GN2, GN2.1, GN2.2	_	grain number 2, GRAINS NUMBER 2			2	"a newly identified gene from \"Yuanjiang\" common wild rice (O. rufipogon Griff.). A 1094-bp sequence from LOC_Os02g45150 was inserted into the third exon of LOC_Os02g56630, and that the inserted sequence recruited its nearby sequence to generate the chimeric GN2."	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date							TO:0002759 - grain number, TO:0000137 - days to heading, TO:0000207 - plant height	
21583	TDC7	OsTDC7	TRYPTOPHAN DECARBOXYLASE 7	Pyridoxal dependant decarboxylase, tryptophan decarboxylase 7	TRYPTOPHAN DECARBOXYLASE 7		10		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0400500	LOC_Os10g26110.1				GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009416 - response to light stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0009628 - response to abiotic stimulus, GO:0006520 - cellular amino acid metabolic process, GO:0030170 - pyridoxal phosphate binding, GO:0016831 - carboxy-lyase activity	TO:0000276 - drought tolerance, TO:0000075 - light sensitivity, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000179 - biotic stress trait, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance	
21584	_		_	ketoacyIACP reductase			8		 Biochemical character	Os08g0510400	LOC_Os08g39960.1, LOC_Os08g39960.2				GO:0006629 - lipid metabolic process		
21585	FATA	OsFatA, FatA	ACYL-ACP THIOESTERASE	acyIACP thioesterase, acyl-ACP thioesterase	ACYL-ACP THIOESTERASE		9		 Biochemical character	Os09g0505300	LOC_Os09g32760.1, LOC_Os09g32760.2, LOC_Os09g32760.3				GO:0006629 - lipid metabolic process, GO:0009507 - chloroplast, GO:0006633 - fatty acid biosynthetic process, GO:0016790 - thiolester hydrolase activity		
21586	MTR1	OsMTR1	MICROSPORE AND TAPETUM REGULATOR1	microspore and tapetum regulator 1		mtr1	2	LOC_Os02g28970. Secretory Fasciclin Glycoprotein.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0491300	LOC_Os02g28970.2, LOC_Os02g28970.1				GO:0009556 - microsporogenesis, GO:0048653 - anther development, GO:0005886 - plasma membrane, GO:0048658 - tapetal layer development	TO:0000421 - pollen fertility, TO:0000437 - male sterility	PO:0001004 - anther development stage 
21587	_	OsHLM1, HLM1	_					a homolog of Arabidopsis HLM1.							GO:0060548 - negative regulation of cell death		
21588	BPH28	Bph28, Bph28(t)	BROWN PLANTHOPPER RESISTANCE 28				11		 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
21589	BPH29	Bph29	BROWN PLANTHOPPER RESISTANCE 29				6	KC019172 (Oryza sativa indica), KC019173(Oryza rufipogon). LOC_Os06g01860. Q5VS55. a B3 DNA- binding domain-containing protein. a new recessive BPH resistance gene.	 Tolerance and resistance - Insect resistance	Os06g0107800	LOC_Os06g01860.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009625 - response to insect, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000424 - brown planthopper resistance	
21590	MS	MLS, OsMLS, OsMS, OsMST, MST	MALATE SYNTHASE 	malate synthase	MALATE SYNTHASE 		4	Q7XUG1.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os04g0486950	LOC_Os04g40990.2, LOC_Os04g40990.1				GO:0006108 - malate metabolic process, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress, GO:0009514 - glyoxysome, GO:0006099 - tricarboxylic acid cycle, GO:0006097 - glyoxylate cycle, GO:0005737 - cytoplasm, GO:0004474 - malate synthase activity, GO:0009617 - response to bacterium	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
21591	BMY10 	OsBMY10, OsBES1-3, BES1-3	BETA-AMYLASE 10	beta-amylase 10, BRI1-EMSSUPPRESSOR1-3, BRI1-EMSSUPPRESSOR 1-3	BETA-AMYLASE 10		2	GO:0102229: amylopectin maltohydrolase activity. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0129600	LOC_Os02g03690.1				GO:0006970 - response to osmotic stress, GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process, GO:0009409 - response to cold, GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0000333 - sugar content, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000227 - root length, TO:0000303 - cold tolerance	PO:0007073 - 2 formation of axillary shoot stage , PO:0007616 - flowering stage , PO:0007010 - whole plant fruit ripening stage , PO:0007042 - whole plant fruit formation stage 
21592	BMY1	OsBMY1	BETA-AMYLASE 1	beta-amylase 1	BETA-AMYLASE 1		7	GO:0102229: amylopectin maltohydrolase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0543100	LOC_Os07g35880.1				GO:0000272 - polysaccharide catabolic process, GO:0042545 - cell wall modification, GO:0010238 - response to proline, GO:0016161 - beta-amylase activity	TO:0000034 - chromium sensitivity	
21593	BMY2	OsBMY2, OsBmy6, Bmy6	BETA-AMYLASE 2	beta-amylase 2	BETA-AMYLASE 2		7	OsBmy6 in Liu et al. 2021. GO:0102229: amylopectin maltohydrolase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0543300	LOC_Os07g35940.1				GO:0016161 - beta-amylase activity, GO:0042545 - cell wall modification, GO:0000272 - polysaccharide catabolic process, GO:0009409 - response to cold, GO:0010238 - response to proline	TO:0000333 - sugar content, TO:0000303 - cold tolerance, TO:0000034 - chromium sensitivity	
21594	DJLM	DJ-LM, OsDRP1E, DRP1E	DONGJIN-LESION MIMIC	dongjin-lesion mimic, dynamin-related protein 1E	DYNAMIN-RELATED PROTEIN 1E	dj-lm	9	GO:0090199: regulation of release of cytochrome c from mitochondria. GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance	Os09g0572900	LOC_Os09g39960.1				GO:0043069 - negative regulation of programmed cell death, GO:0000266 - mitochondrial fission, GO:0042742 - defense response to bacterium, GO:0001836 - release of cytochrome c from mitochondria, GO:0050832 - defense response to fungus, GO:0007005 - mitochondrion organization, GO:0031348 - negative regulation of defense response, GO:0005739 - mitochondrion, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding, GO:0016020 - membrane	TO:0000074 - blast disease, TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance	
21595	DRP1A	OsDRP1A	DYNAMIN-RELATED PROTEIN 1A	dynamin-related protein 1A	DYNAMIN-RELATED PROTEIN 1A		5			Os05g0556100	LOC_Os05g48240.1, LOC_Os05g48240.4				GO:0000266 - mitochondrial fission, GO:0005737 - cytoplasm, GO:0003924 - GTPase activity, GO:0008017 - microtubule binding, GO:0005525 - GTP binding		
21596	DRP1B	OsDRP1B	DYNAMIN-RELATED PROTEIN 1B	dynamin-related protein 1B	DYNAMIN-RELATED PROTEIN 1B		1			Os01g0681100	LOC_Os01g48900.1				GO:0000266 - mitochondrial fission, GO:0008017 - microtubule binding, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005737 - cytoplasm		
21597	DRP1D	OsDRP1C, DRP1C, OsDRP1D	DYNAMIN-RELATED PROTEIN 1D	dynamin-related protein 1C, dynamin-related protein 1D	DYNAMIN-RELATED PROTEIN 1D		10	OsDRP1C (AK061703), OsDRP1D (AK073186) in Li et al. 2017.		Os10g0567800	LOC_Os10g41820.1, LOC_Os10g41820.2				GO:0003924 - GTPase activity, GO:0000266 - mitochondrial fission, GO:0008017 - microtubule binding, GO:0005525 - GTP binding, GO:0005737 - cytoplasm		
21598	DRP2A	OsDRP2A	DYNAMIN-RELATED PROTEIN 2A	dynamin-related protein 2A	DYNAMIN-RELATED PROTEIN 2A		6			Os06g0247800	LOC_Os06g13820.1, LOC_Os06g13820.2				GO:0000266 - mitochondrial fission, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding, GO:0003924 - GTPase activity, GO:0005525 - GTP binding		
21599	DRP2C	OsDRP2C	DYNAMIN-RELATED PROTEIN 2C	dynamin-related protein 2C	DYNAMIN-RELATED PROTEIN 2C		8			Os08g0425100	LOC_Os08g32920.1				GO:0000266 - mitochondrial fission, GO:0008017 - microtubule binding, GO:0005737 - cytoplasm, GO:0005525 - GTP binding, GO:0003924 - GTPase activity		
21600	DRP3A	OsDRP3A	DYNAMIN-RELATED PROTEIN 3A	dynamin-related protein 3A	DYNAMIN-RELATED PROTEIN 3A		1			Os01g0920400	LOC_Os01g69130.2, LOC_Os01g69130.1				GO:0008017 - microtubule binding, GO:0005737 - cytoplasm, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0000266 - mitochondrial fission		
21601	DRP3B	OsDRP3B	DYNAMIN-RELATED PROTEIN 3B	dynamin-related protein 3B	DYNAMIN-RELATED PROTEIN 3B		4			Os04g0381000	LOC_Os04g31190.1				GO:0005737 - cytoplasm, GO:0000266 - mitochondrial fission, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0008017 - microtubule binding		
21602	_	OsDRP3C, DRP3C	_	dynamin-related protein 3C	DYNAMIN-RELATED PROTEIN 3C			AK111167.		AK111167							
21603	_	OsRBX1a, RBX1a, OsRING442, RING442	_	RING-BOX1a, RING-type E3 ubiquitin ligase 442			2	XP_015625781.1 		Os02g0708300	LOC_Os02g47870.1				GO:0005680 - anaphase-promoting complex, GO:0004842 - ubiquitin-protein ligase activity, GO:0031463 - Cul3-RING ubiquitin ligase complex		
21604	SPL88 	OsCUL3a, CUL3a, OsSPL88	SPOTTED LEAF 88	Cullin3a, Cullin 3a, spotted leaf88	CULLIN 3A	oscul3a, spl88-1, spl88-2	2	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Lesion mimic,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance	Os02g0746000	LOC_Os02g51180.1				GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0009416 - response to light stimulus, GO:0042742 - defense response to bacterium, GO:0000302 - response to reactive oxygen species, GO:0043067 - regulation of programmed cell death, GO:0031348 - negative regulation of defense response, GO:0060548 - negative regulation of cell death, GO:0042743 - hydrogen peroxide metabolic process, GO:0050687 - negative regulation of defense response to virus, GO:0031625 - ubiquitin protein ligase binding, GO:0009658 - chloroplast organization	TO:0000295 - chlorophyll-b content, TO:0002715 - chloroplast development trait, TO:0001015 - photosynthetic rate, TO:0000293 - chlorophyll-a content, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0002759 - grain number, TO:0000050 - inflorescence branching, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000075 - light sensitivity, TO:0000325 - soluble protein content, TO:0000175 - bacterial blight disease resistance, TO:0000357 - growth and development trait, TO:0000063 - mimic response, TO:0000148 - viral disease resistance, TO:0000605 - hydrogen peroxide content	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root 
21605	ASNASE1  	OsASNase1, ASNase1	ASPARAGINASE 1 	asparaginase1, asparaginase 1	ASPARAGINASE 1 		3		 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os03g0597600 	LOC_Os03g40070.1				GO:0016787 - hydrolase activity, GO:0006530 - asparagine catabolic process		PO:0009051 - spikelet 
21606	ASNASE2	OsASNase2, ASNase2	ASPARAGINASE 2	asparaginase2, asparaginase 2	ASPARAGINASE 2		4		 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Seed	Os04g0650700  	LOC_Os04g55710.1				GO:0016787 - hydrolase activity, GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0006530 - asparagine catabolic process, GO:0010150 - leaf senescence, GO:0004067 - asparaginase activity	TO:0000276 - drought tolerance, TO:0000249 - leaf senescence, TO:0000653 - seed development trait	PO:0009001 - fruit , PO:0001170 - seed development stage , PO:0000074 - parenchyma cell , PO:0001054 - 4 leaf senescence stage , PO:0009051 - spikelet , PO:0005020 - vascular bundle , PO:0008007 - nucellar projection , PO:0020103 - flag leaf , PO:0000071 - companion cell , PO:0004006 - mesophyll cell 
21607	LRD43	RLS1, OsRLS1, OsLRD43, NOE2, OsNOE2	LESION RESEMBLING DISEASE 43	lesion resembling disease 43, rapid leaf senescence 1, NO-excess 2, nitric oxide excess 2		lrd43, rls1, noe2, RLS1-D	2	NB-ARM (nucleotide binding site-armadillo domain) protein. GO:1904821: chloroplast disassembly. GO:1902884: positive regulation of response to oxidative stress.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Vegetative organ - Leaf	Os02g0203500	LOC_Os02g10900.1				GO:0033484 - nitric oxide homeostasis, GO:0045454 - cell redox homeostasis, GO:0010942 - positive regulation of cell death, GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0010363 - regulation of plant-type hypersensitive response, GO:0006979 - response to oxidative stress, GO:0009646 - response to absence of light, GO:0043067 - regulation of programmed cell death, GO:0042742 - defense response to bacterium, GO:0009642 - response to light intensity, GO:0009658 - chloroplast organization, GO:0009416 - response to light stimulus, GO:0009735 - response to cytokinin stimulus, GO:0010150 - leaf senescence, GO:0043531 - ADP binding	TO:0000167 - cytokinin sensitivity, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000460 - light intensity sensitivity, TO:0000075 - light sensitivity, TO:0000326 - leaf color, TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content	PO:0001054 - 4 leaf senescence stage 
21608	_	SPL30	_	spotted leaf 30, SPOTTED LEAF 30		spl30	9	The spl30 gene was mapped between markers XSN2 and XSN4 and the genetic distances of the two markers were 1.7 cM and 0.2 cM, respectively. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Lesion mimic						GO:0042742 - defense response to bacterium, GO:0012501 - programmed cell death, GO:0009416 - response to light stimulus, GO:0009270 - response to humidity, GO:0006952 - defense response, GO:0042743 - hydrogen peroxide metabolic process	TO:0000075 - light sensitivity, TO:0000325 - soluble protein content, TO:0000069 - variegated leaf, TO:0000605 - hydrogen peroxide content, TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance, TO:0000495 - chlorophyll content	PO:0009025 - vascular leaf 
21609	SPL29	UAP1, OsUAP1, OsSPL29	SPOTTED LEAF 29	spotted leaf 29, UDP-N-acetylglucosamine pyrophosphorylase 1	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 1 	spl29, uap1	8	GO:1900055: regulation of leaf senescence. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Lesion mimic,  Biochemical character,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os08g0206900	LOC_Os08g10600.3, LOC_Os08g10600.1, LOC_Os08g10600.2				GO:0009694 - jasmonic acid metabolic process, GO:0012501 - programmed cell death, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0042743 - hydrogen peroxide metabolic process, GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity, GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0010150 - leaf senescence, GO:0005829 - cytosol, GO:0031347 - regulation of defense response, GO:0009687 - abscisic acid metabolic process, GO:0005737 - cytoplasm	TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content, TO:0000063 - mimic response, TO:0002667 - abscisic acid content, TO:0000249 - leaf senescence, TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0002668 - jasmonic acid content	PO:0001054 - 4 leaf senescence stage , PO:0001050 - leaf development stage 
21610	UAP2	OsUAP2	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 2	UDP-N-acetylglucosamine pyrophosphorylase 2	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 2		4	NP_001053857.1	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic,  Biochemical character,  Coloration - Chlorophyll	Os04g0613700	LOC_Os04g52370.1, LOC_Os04g52370.2				GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity, GO:0005737 - cytoplasm, GO:0010150 - leaf senescence, GO:0005829 - cytosol, GO:0006048 - UDP-N-acetylglucosamine biosynthetic process	TO:0000249 - leaf senescence, TO:0000063 - mimic response, TO:0000495 - chlorophyll content	PO:0001050 - leaf development stage , PO:0001054 - 4 leaf senescence stage 
21611	SPL31		SPOTTED LEAF 31	spotted leaf 31		spl31	12	Spl31 locus was mapped on chromosome 12 near the centromere between ID104 and ID11 with physical distance of 383 kb and co-segregated with ID105. 	 Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic						GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization, GO:0012501 - programmed cell death	TO:0000063 - mimic response, TO:0000180 - spikelet fertility, TO:0000382 - 1000-seed weight, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage 
21612	SPL30	spl30(t)	SPOTTED LEAF 30	spotted leaf 30, spotted-leaf30		spl30	3	The mutation was controlled by a single recessive gene, tentatively named spl30(t), which co-segregated with RM15380 on chromosome 3, and was delimited to a 94 kb region between RM15380 and RM15383.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic						GO:0015994 - chlorophyll metabolic process, GO:0012501 - programmed cell death, GO:0009416 - response to light stimulus, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000495 - chlorophyll content, TO:0000075 - light sensitivity, TO:0000063 - mimic response	
21613	LAC6	OsLAC6	LACCASE 6	laccase 6	LACCASE 6		1	Q5N9W4. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0843800 	LOC_Os01g62600.1				GO:0048046 - apoplast, GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding, GO:0046274 - lignin catabolic process	TO:0000276 - drought tolerance	
21614	LAC7	OsLAC7	LACCASE 7	laccase 7	LACCASE 7		1	Q5N7A3. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0850550  	LOC_Os01g63180.1				GO:0048046 - apoplast, GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process	TO:0006001 - salt tolerance	
21615	LAC13	OsLAC13	LACCASE 13	laccase 13	LACCASE 13		5	Q0DHL5. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os05g0458300   	LOC_Os05g38390.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0005507 - copper ion binding		
21617	LAC16	OsLAC16	LACCASE 16	laccase 16	LACCASE 16		7	Q69L99. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os07g0101000     	LOC_Os07g01110.1				GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast		
21618	LAC17	OsLAC17	LACCASE 17	laccase 17	LACCASE 17		10	Q339K6. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0346300      	LOC_Os10g20610.1				GO:0046685 - response to arsenic, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0048046 - apoplast, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0046274 - lignin catabolic process	TO:0000034 - chromium sensitivity	
21619	LAC22	OsLAC22	LACCASE 22	laccase 22	LACCASE 22		11	Q53LU4. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os11g0264000      	LOC_Os11g16260.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0005507 - copper ion binding		
21620	LAC23	OsLAC23, OsLAC19, LAC19	LACCASE 23	laccase 23	LACCASE 23		11	Q2R0L2. GO:0052716: hydroquinone:oxygen oxidoreductase activity. OsLAC19 in Sanchez-Sanuy et al. 2019.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0641500      	LOC_Os11g42200.1				GO:0046685 - response to arsenic, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0046274 - lignin catabolic process, GO:0048046 - apoplast, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0046688 - response to copper ion, GO:0005507 - copper ion binding	TO:0000034 - chromium sensitivity, TO:0000021 - copper sensitivity	
21621	LAC24	OsLAC24	LACCASE 24	laccase 24	LACCASE 24		11	Q2R0L0. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0641800      	LOC_Os11g42220.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0010038 - response to metal ion, GO:0005507 - copper ion binding, GO:0010288 - response to lead ion, GO:0048046 - apoplast, GO:0046686 - response to cadmium ion, GO:0046274 - lignin catabolic process	TO:0000034 - chromium sensitivity	
21622	LAC28	OsLAC28	LACCASE 28	laccase 28	LACCASE 28		12	GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0257600      	LOC_Os12g15530.1				GO:0046274 - lignin catabolic process, GO:0046688 - response to copper ion, GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0016722 - oxidoreductase activity, oxidizing metal ions	TO:0000021 - copper sensitivity	PO:0009089 - endosperm 
21623	LAC29	OsLAC29	LACCASE 29	laccase 29	LACCASE 29		12	Q2QUN2. GO:0052716: hydroquinone:oxygen oxidoreductase activity. OsmiR397b target laccase (LAC) gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0258700      	LOC_Os12g15680.1				GO:0009651 - response to salt stress, GO:0048046 - apoplast, GO:0005507 - copper ion binding, GO:0046688 - response to copper ion, GO:0046685 - response to arsenic, GO:0046274 - lignin catabolic process, GO:0046686 - response to cadmium ion, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0010038 - response to metal ion	TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity, TO:0000034 - chromium sensitivity	PO:0009089 - endosperm 
21624	LAC30	OsLAC30	LACCASE 30	laccase 30	LACCASE 30		12	Q0IP28. GO:0052716: hydroquinone:oxygen oxidoreductase activity.	 Biochemical character	Os12g0259800      	LOC_Os12g15920.1				GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding, GO:0048046 - apoplast, GO:0046274 - lignin catabolic process		
21625	LAC20	OsLAC20	LACCASE 20	laccase 20	LACCASE 20		11	LOC_Os11g01730.	 Biochemical character	Os11g0108650 	LOC_Os11g01730.1				GO:0005507 - copper ion binding		
21626	_	APIP12	_	AvrPiz-t Interacting Protein 12			1	nucleoporin protein Nup98 Homolog. LOC_Os01g28690. GO:0044614: nuclear pore cytoplasmic filaments.	 Tolerance and resistance - Disease resistance	Os01g0383900	LOC_Os01g28690.1, LOC_Os01g28690.2				GO:0017056 - structural constituent of nuclear pore, GO:0050832 - defense response to fungus, GO:0008139 - nuclear localization sequence binding, GO:0006606 - protein import into nucleus, GO:0006405 - RNA export from nucleus, GO:0005487 - nucleocytoplasmic transporter activity, GO:0003723 - RNA binding, GO:0034398 - telomere tethering at nuclear periphery, GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	TO:0000074 - blast disease	
21627	IDD4	OsIDD4, SID1	INDETERMINATE DOMAIN 4	indeterminate domain 4, Suppressor of rid1	_	sid1-D	2		 Reproductive organ - Heading date	Os02g0672100	LOC_Os02g45054.4, LOC_Os02g45054.3, LOC_Os02g45054.1, LOC_Os02g45054.2				GO:0003676 - nucleic acid binding, GO:0046872 - metal ion binding, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
21628	AAO3	OsAAO3	ASCORBATE OXIDASE 3	ascorbate oxidase 3	ASCORBATE OXIDASE 3		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0119400	LOC_Os07g02810.1				GO:0009505 - plant-type cell wall, GO:0009506 - plasmodesma, GO:0009651 - response to salt stress, GO:0016722 - oxidoreductase activity, oxidizing metal ions, GO:0005507 - copper ion binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009005 - root 
21629	RHA6	AtpB, OsRHA6	_	beta subunit of ATP synthase			1		 Tolerance and resistance - Stress tolerance	Os01g0685800	LOC_Os01g49190.1				GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0015986 - ATP synthesis coupled proton transport	TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility	
21630	_	OsAKR, AKR, OsAKR3, AKR3	_	aldo-keto reductase, Group 3 Aldo-Keto Reductase	_		4	Q7XQ45. one of eight members of Group 3 Aldo-Keto Reductase.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0339400	LOC_Os04g27060.1				GO:0016491 - oxidoreductase activity, GO:0051775 - response to redox state		
21631	_	STS22	_	Imidazoleglycerol-phosphate dehydratase			4		 Biochemical character	Os04g0617800	LOC_Os04g52710.1, LOC_Os04g52710.2, LOC_Os04g52710.3				GO:0004424 - imidazoleglycerol-phosphate dehydratase activity, GO:0000105 - histidine biosynthetic process		
21632	_	STS90	_	Phytoene dehydrogenase			12		 Biochemical character	Os12g0631800	LOC_Os12g43590.1				GO:0016491 - oxidoreductase activity, GO:0005507 - copper ion binding, GO:0005739 - mitochondrion		
21634	SCS1	OsSCS1	SNRK2-CALCIUM SENSOR 1	SnRK2-calcium sensor 1	SNRK2-CALCIUM SENSOR 1		3	LOC_Os03g14590. calcium-binding elongation factor (EF) hand family protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0250000	LOC_Os03g14590.1, LOC_Os03g14590.2, LOC_Os03g14590.3				GO:0005509 - calcium ion binding, GO:0051607 - defense response to virus, GO:0009738 - abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	
21635	DG1		DEFECTIVE GLUME 1 	defective glume 1		dg1	8	The DG1 gene was mapped to chromosome 8 between InDel markers In13 and In14, an approximately 31-kb physical distance in Nipponbare. In the 31-kb target region, there were eight predicted opening reading frames. TO:0006064: rolled leaf.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn						GO:0009741 - response to brassinosteroid stimulus, GO:0008283 - cell proliferation, GO:0048437 - floral organ development, GO:0001558 - regulation of cell growth, GO:0009742 - brassinosteroid mediated signaling, GO:0009908 - flower development	TO:0002601 - stamen size, TO:0006012 - carpel anatomy and morphology trait, TO:0000215 - stamen anatomy and morphology trait, TO:0006022 - floral organ development trait, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000206 - leaf angle, TO:0000622 - flower development trait, TO:0000402 - grain width, TO:0002637 - leaf size, TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0002677 - brassinosteroid sensitivity, TO:0000079 - lemma and palea anatomy and morphology trait	PO:0007615 - flower development stage , PO:0007600 - floral organ differentiation stage 
21636	_		_				4	LOC_Os04g52290.	 Tolerance and resistance - Stress tolerance	Os04g0612800	LOC_Os04g52290.1				GO:0003723 - RNA binding, GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0009451 - RNA modification, GO:0004519 - endonuclease activity	TO:0000276 - drought tolerance	
21637	_		_				7	LOC_Os07g02710.	 Tolerance and resistance - Stress tolerance	Os07g0118300	LOC_Os07g02710.1				GO:0005774 - vacuolar membrane, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	
21638	_		_				2	LOC_Os02g04650.	 Tolerance and resistance - Stress tolerance	Os02g0139100	LOC_Os02g04650.1				GO:0001671 - ATPase activator activity, GO:0051087 - chaperone binding		
21639	YSS1		YOUNG SEEDLING STRIPE1	Young Seedling Stripe1, Young Seedling Stripe 1		yss1	4	a chloroplast nucleoid-associated protein. LOC_Os04g59570. TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os04g0692200	LOC_Os04g59570.1, LOC_Os04g59570.2				GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0009266 - response to temperature stimulus	TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000069 - variegated leaf, TO:0000293 - chlorophyll-a content, TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0000075 - light sensitivity	
21641	DHHC1	OsDHHC1, OsPAT15, PAT15, OsDHHC06, DHHC06, OsDHHC6, DHHC6	DHHC-TYPE ZINC FINGER PROTEIN 1	DHHC-type zinc finger protein 1, Protein S-acyltransferase 15, DHHC domain protein 29	DHHC-TYPE ZINC FINGER PROTEIN 1		2	KX783131. OsDHHC1 was a spliced variant of Os02g0819100, whose CDS contained 672 bp with a 147 bp sequence (position 113-289) remove from Os02g0819100. OsDHHC06 in Tian et al. 2022,	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0819100 	LOC_Os02g57370.1				GO:0006612 - protein targeting to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0009416 - response to light stimulus, GO:0016021 - integral to membrane, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine	TO:0000346 - tiller number, TO:0000265 - light quality sensitivity, TO:0000396 - grain yield	PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0007073 - 2 formation of axillary shoot stage 
21642	AK1	OsAK1, OsAk2, Ak2	ADENYLATE KINASE 1	adenylate kinase 1	ADENYLATE KINASE 1		8	Q6ZC69.  the closest homolog of Arabidopsis ADENOSINE MONO- PHOSPHATE KINASE 2 (AMK2). OsAk2 in Xu et al. 2023. GO:2000505: regulation of energy homeostasis. TO:0006060: leaf chlorosis.	 Biochemical character,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance	Os08g0109300	LOC_Os08g01770.1, LOC_Os08g01770.2				GO:0004017 - adenylate kinase activity, GO:0009570 - chloroplast stroma, GO:0009658 - chloroplast organization, GO:0005524 - ATP binding, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0050832 - defense response to fungus, GO:0010109 - regulation of photosynthesis	TO:0000201 - panicle color, TO:0002724 - leaf sheath color, TO:0000316 - photosynthetic ability, TO:0000074 - blast disease, TO:0000371 - yield trait, TO:0000447 - filled grain number, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000069 - variegated leaf	
21643	PDHE1A	OsPDHE1-A	PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-1 	pyruvate dehydrogenase E1 component subunit alpha-1	PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-1 		2	LOC_Os02g50620. Q6Z5N4.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0739600	LOC_Os02g50620.1				GO:0005759 - mitochondrial matrix, GO:0009409 - response to cold, GO:0006086 - acetyl-CoA biosynthetic process from pyruvate, GO:0006096 - glycolysis, GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity	TO:0000303 - cold tolerance	
21644	_	LRR-RLK	_	leucine-rich repeat receptor-like kinase			1	LOC_Os01g49920.	 Tolerance and resistance - Stress tolerance	Os01g0694100	LOC_Os01g49920.1				GO:0006950 - response to stress	TO:0000168 - abiotic stress trait	
21645	BETACA2	OsbetaCA2, betaCA2	BETA-CARBONIC ANHYDRASE 2 	beta-carbonic anhydrase 2	BETA-CARBONIC ANHYDRASE 2 		9	LOC_Os09g28910.	 Biochemical character	Os09g0464000	LOC_Os09g28910.1, LOC_Os09g28910.2, LOC_Os09g28910.3, LOC_Os09g28910.4, LOC_Os09g28910.5				GO:0015976 - carbon utilization, GO:0004089 - carbonate dehydratase activity, GO:0008270 - zinc ion binding		
21646	ALPHACA1	OsalphaCA1, alphaCA1	ALPHA-CARBONIC ANHYDRASE 1 	alpha-carbonic anhydrase 1, alpha-type carbonic anhydrase 1	ALPHA-CARBONIC ANHYDRASE 1 	alphaca1, alphaca1-1, alphaca1-2	2	PO:0030123: panicle inflorescence.	 Biochemical character,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os02g0533300	LOC_Os02g33030.1				GO:0004089 - carbonate dehydratase activity, GO:0008270 - zinc ion binding, GO:0019685 - photosynthesis, dark reaction, GO:0015977 - carbon utilization by fixation of carbon dioxide, GO:0006730 - one-carbon metabolic process, GO:0009507 - chloroplast	TO:0001017 - water use efficiency, TO:0000396 - grain yield, TO:0000457 - total biomass yield, TO:0000696 - starch content, TO:0001015 - photosynthetic rate, TO:0000547 - primary branch number, TO:0000040 - panicle length, TO:0000552 - shoot dry weight, TO:0000571 - shoot fresh weight, TO:0000078 - root dry weight, TO:0000227 - root length, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000447 - filled grain number, TO:0000316 - photosynthetic ability	PO:0009049 - inflorescence , PO:0020103 - flag leaf , PO:0025034 - leaf 
21647	ALPHACA2	OsalphaCA2, alphaCA2	ALPHA-CARBONIC ANHYDRASE 2	alpha-carbonic anhydrase 2	ALPHA-CARBONIC ANHYDRASE 2		4		 Biochemical character	Os04g0412500	LOC_Os04g33660.1, LOC_Os04g33660.2				GO:0004089 - carbonate dehydratase activity, GO:0008270 - zinc ion binding, GO:0006730 - one-carbon metabolic process, GO:0005886 - plasma membrane		PO:0020103 - flag leaf 
21648	ALPHACA4	OsalphaCA4, alphaCA4	ALPHA-CARBONIC ANHYDRASE 4	alpha-carbonic anhydrase 4	ALPHA-CARBONIC ANHYDRASE 4		8	LOC_Os08g32780.	 Biochemical character	Os08g0423600	LOC_Os08g32780.1				GO:0006730 - one-carbon metabolic process, GO:0008270 - zinc ion binding, GO:0004089 - carbonate dehydratase activity		
21649	ALPHACA5	OsalphaCA5, alphaCA5	ALPHA-CARBONIC ANHYDRASE 5	alpha-carbonic anhydrase 5	ALPHA-CARBONIC ANHYDRASE 5		8	LOC_Os08g32840.	 Biochemical character	Os08g0424100	LOC_Os08g32840.1				GO:0006730 - one-carbon metabolic process, GO:0008270 - zinc ion binding, GO:0004089 - carbonate dehydratase activity		
21650	ALPHACA6	OsalphaCA6, alphaCA6	ALPHA-CARBONIC ANHYDRASE 6	alpha-carbonic anhydrase 6	ALPHA-CARBONIC ANHYDRASE 6		8	LOC_Os08g36630.	 Biochemical character	Os08g0470200	LOC_Os08g36630.1						
21651	ALPHACA7	OsalphaCA7, alphaCA7	ALPHA-CARBONIC ANHYDRASE 7	alpha-carbonic anhydrase 7	ALPHA-CARBONIC ANHYDRASE 7		8	LOC_Os08g36680.	 Biochemical character	Os08g0470700	LOC_Os08g36680.1, LOC_Os08g36680.2				GO:0008270 - zinc ion binding, GO:0006730 - one-carbon metabolic process, GO:0004089 - carbonate dehydratase activity		
21652	ALPHACA8	OsalphaCA8, alphaCA8	ALPHA-CARBONIC ANHYDRASE 8	alpha-carbonic anhydrase 8	ALPHA-CARBONIC ANHYDRASE 8		9	LOC_Os09g28130.	 Biochemical character	Os09g0454400	LOC_Os09g28130.1						
21653	ALPHACA9	OsalphaCA9, alphaCA9	ALPHA-CARBONIC ANHYDRASE 9	alpha-carbonic anhydrase 9	ALPHA-CARBONIC ANHYDRASE 9		9	LOC_Os09g28150.	 Biochemical character	Os09g0454500	LOC_Os09g28150.1				GO:0004089 - carbonate dehydratase activity, GO:0008270 - zinc ion binding, GO:0006730 - one-carbon metabolic process		
21654	ALPHACA11	OsalphaCA11, alphaCA11	ALPHA-CARBONIC ANHYDRASE 11	alpha-carbonic anhydrase 11	ALPHA-CARBONIC ANHYDRASE 11		12	LOC_Os12g05730.	 Biochemical character	Os12g0153500	LOC_Os12g05730.1				GO:0004089 - carbonate dehydratase activity, GO:0006730 - one-carbon metabolic process, GO:0008270 - zinc ion binding		
21655	PLC2	OsPLC2, OsC2DP30, C2DP30	PHOSPHOLIPASE C2 	phospholipase C2, C2 Domain-Containing Protein 30	PHOSPHOLIPASE C2 		3	GO:0035556: intracellular signal transduction. PO:0030123: panicle inflorescence. GO:0160020: positive regulation of ferroptosis. 	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0289300	LOC_Os03g18000.1, LOC_Os03g18010.1				GO:0010229 - inflorescence development, GO:0009737 - response to abscisic acid stimulus, GO:0009626 - plant-type hypersensitive response, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0005622 - intracellular, GO:0009409 - response to cold, GO:0004435 - phosphoinositide phospholipase C activity, GO:0004871 - signal transducer activity, GO:0016042 - lipid catabolic process	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
21656	PLC3	OsPLC3, OsC2DP82, C2DP82	PHOSPHOLIPASE C3	phospholipase C3, C2 Domain-Containing Protein 82	PHOSPHOLIPASE C3		12	CT835563. GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0562400	LOC_Os12g37560.1, LOC_Os12g37560.2				GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0048316 - seed development, GO:0009414 - response to water deprivation, GO:0016042 - lipid catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0004435 - phosphoinositide phospholipase C activity, GO:0010229 - inflorescence development	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
21657	PLC4	OsPLC4, OsC2DP41, C2DP41	PHOSPHOLIPASE C4	phospholipase C4, Phosphatidylinositol-hydrolyzing phospholipase C4, C2 Domain-Containing Protein 41	PHOSPHOLIPASE C4	plc4-1, plc4-2	5	GO:0035556: intracellular signal transduction.  GO:0160020: positive regulation of ferroptosis. 	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0127200	LOC_Os05g03610.1				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0010446 - response to alkalinity, GO:0050832 - defense response to fungus, GO:0009626 - plant-type hypersensitive response, GO:0048016 - inositol phosphate-mediated signaling, GO:0016042 - lipid catabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0050848 - regulation of calcium-mediated signaling, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0004435 - phosphoinositide phospholipase C activity, GO:0004871 - signal transducer activity, GO:0005622 - intracellular, GO:0006970 - response to osmotic stress	TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000481 - alkali sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
21659	ADC3	OsADC3, OsADC1, ADC1	ARGININE DECARBOXYLASE 3	Arginine decarboxylase 3	ARGININE DECARBOXYLASE 3		8	OsADC1 in Zhu et al. 2020.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0433000 	LOC_Os08g33620.1				GO:0008295 - spermidine biosynthetic process, GO:0006596 - polyamine biosynthetic process, GO:0006527 - arginine catabolic process, GO:0008792 - arginine decarboxylase activity		
21660	ODC2	OsODC2	ORNITHINE DECARBOXYLASE 2	ornithine decarboxylase 2	ORNITHINE DECARBOXYLASE 2		4	LOC_Os04g04980.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0136500	LOC_Os04g04980.1				GO:0005737 - cytoplasm, GO:0006596 - polyamine biosynthetic process, GO:0033387 - putrescine biosynthetic process from ornithine, GO:0009651 - response to salt stress, GO:0003824 - catalytic activity, GO:0004586 - ornithine decarboxylase activity	TO:0006001 - salt tolerance	
21661	ODC4	OsODC4	ORNITHINE DECARBOXYLASE 4	ornithine decarboxylase 4	ORNITHINE DECARBOXYLASE 4		3	LOC_Os03g45230.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0654900	LOC_Os03g45230.1				GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21662	AIH	OsAIH	AGMATINE IMINOHYDROLASE	Agmatine iminohydrolase	AGMATINE IMINOHYDROLASE		4	GO:0097501: stress response to metal ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0466600	LOC_Os04g39210.1				GO:0009446 - putrescine biosynthetic process, GO:0005737 - cytoplasm, GO:0010038 - response to metal ion, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0004668 - protein-arginine deiminase activity, GO:0047632 - agmatine deiminase activity, GO:0006596 - polyamine biosynthetic process	TO:0000034 - chromium sensitivity, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
21663	CPA2	OsCPA2	CARBAMOYLPUTRESCINE AMIDASE 2	N-carbamoyl-Put amidohydrolase 2	CARBAMOYLPUTRESCINE AMIDASE 2		3	LOC_Os03g07910.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0175600	LOC_Os03g07910.1				GO:0006807 - nitrogen compound metabolic process, GO:0008270 - zinc ion binding, GO:0009570 - chloroplast stroma, GO:0050152 - omega-amidase activity, GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0006108 - malate metabolic process, GO:0006107 - oxaloacetate metabolic process, GO:0005829 - cytosol	TO:0006001 - salt tolerance	
21664	CPA3	OsCPA3	CARBAMOYLPUTRESCINE AMIDASE 3	N-carbamoyl-Put amidohydrolase 3	CARBAMOYLPUTRESCINE AMIDASE 3		6	LOC_Os06g10420.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0206000	LOC_Os06g10420.1				GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0006807 - nitrogen compound metabolic process, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	TO:0006001 - salt tolerance	
21665	CPA4	OsCPA4	CARBAMOYLPUTRESCINE AMIDASE 4	N-carbamoyl-Put amidohydrolase 4	CARBAMOYLPUTRESCINE AMIDASE 4		12	GO:0097501: stress response to metal ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0502500	LOC_Os12g31830.1				GO:0009651 - response to salt stress, GO:0006807 - nitrogen compound metabolic process, GO:0046686 - response to cadmium ion, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, GO:0009536 - plastid, GO:0006596 - polyamine biosynthetic process, GO:0006979 - response to oxidative stress, GO:0010038 - response to metal ion, GO:0009507 - chloroplast	TO:0000034 - chromium sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
21666	SAMDC3	OsSAMDC3	S-ADENOSYLMETHIONINE DECARBOXYLASE 3 	S-adenosylmethionine decarboxylase 3	S-ADENOSYLMETHIONINE DECARBOXYLASE 3 		5	LOC_Os05g04990. GO:0099402: plant organ development.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0141800	LOC_Os05g04990.1				GO:0008295 - spermidine biosynthetic process, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0005829 - cytosol, GO:0006557 - S-adenosylmethioninamine biosynthetic process, GO:0006596 - polyamine biosynthetic process, GO:0006597 - spermine biosynthetic process, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21667	SAMDC5	OsSAMDC5	S-ADENOSYLMETHIONINE DECARBOXYLASE 5	S-adenosylmethionine decarboxylase 5	S-ADENOSYLMETHIONINE DECARBOXYLASE 5		9	LOC_Os09g24600.	 Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Os09g24600				GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress, GO:0008295 - spermidine biosynthetic process, GO:0006597 - spermine biosynthetic process, GO:0004014 - adenosylmethionine decarboxylase activity, GO:0005829 - cytosol	TO:0006001 - salt tolerance	
21668	SAMDC6	OsSAMDC6	S-ADENOSYLMETHIONINE DECARBOXYLASE 6	S-adenosylmethionine decarboxylase 6	S-ADENOSYLMETHIONINE DECARBOXYLASE 6		5	LOC_Os05g13480.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0221800	LOC_Os05g13480.1				GO:0004014 - adenosylmethionine decarboxylase activity, GO:0009651 - response to salt stress, GO:0006596 - polyamine biosynthetic process, GO:0008295 - spermidine biosynthetic process, GO:0006597 - spermine biosynthetic process	TO:0006001 - salt tolerance	
21669	SPMS2	OsSPMS2, OsSPDS3, SPDS3	SPERMINE SYNTHASE 2	spermine synthase 2, spermidine/spermine synthase 2, Spermidine synthase 3	SPERMINE SYNTHASE 2		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0254700	LOC_Os02g15550.3, LOC_Os02g15550.2, LOC_Os02g15550.1				GO:0004766 - spermidine synthase activity, GO:0006596 - polyamine biosynthetic process, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0016740 - transferase activity	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
21670	ACL5	OsACL5	ACAULIS5	Acaulis5, Acaulis 5		acl5, osacl5, osacl5-1, osacl5-2	2	GO:1903603: thermospermine biosynthetic process. GO:1904583: response to polyamine macromolecule. GO:2000024: regulation of leaf development. GO:1901342: regulation of vasculature development. GO:0090547: response to low humidity. TO:0020083: stem diameter. TO:0000975: grain width. GO:0035618: root hair.	 Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Vegetative organ - Culm	Os02g0237100	LOC_Os02g14190.1				GO:0006596 - polyamine biosynthetic process, GO:0009408 - response to heat, GO:0009926 - auxin polar transport, GO:0048759 - vessel member cell differentiation, GO:0009651 - response to salt stress, GO:0009644 - response to high light intensity, GO:0009873 - ethylene mediated signaling pathway, GO:0030104 - water homeostasis, GO:0048366 - leaf development, GO:0010364 - regulation of ethylene biosynthetic process, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0030308 - negative regulation of cell growth, GO:0009270 - response to humidity, GO:0004766 - spermidine synthase activity, GO:0010487 - thermospermine synthase activity	TO:0000040 - panicle length, TO:0000391 - seed size, TO:0000145 - internode length, TO:0000339 - stem thickness, TO:0006001 - salt tolerance, TO:0000460 - light intensity sensitivity, TO:0000449 - grain yield per plant, TO:0000396 - grain yield, TO:0000259 - heat tolerance, TO:0000470 - vascular tissue related trait, TO:0000136 - relative water content, TO:0000397 - grain size, TO:0000441 - humidity related trait, TO:0000734 - grain length, TO:0000207 - plant height, TO:0000566 - stomatal frequency, TO:0000382 - 1000-seed weight, TO:0000655 - leaf development trait, TO:0002662 - leaf rolling tolerance	PO:0020104 - leaf sheath , PO:0020033 - coleoptile , PO:0020031 - radicle , PO:0009010 - seed , PO:0005020 - vascular bundle , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0009009 - plant embryo , PO:0000039 - shoot axis vascular system , PO:0000229 - flower meristem , PO:0025477 - floral organ primordium , PO:0020124 - root stele , PO:0005017 - flower vascular system 
21671	DAO1 	OsDAO1, OsCuDAO1, CuDAO1	DIAMINE OXIDASE 1 	diamine oxidase 1, Copper-containing diamine oxidase 1	DIAMINE OXIDASE 1 		6	LOC_Os06g23114.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0338200	LOC_Os06g23114.1				GO:0006598 - polyamine catabolic process, GO:0009651 - response to salt stress, GO:0008131 - amine oxidase activity, GO:0009308 - amine metabolic process, GO:0005507 - copper ion binding, GO:0048038 - quinone binding	TO:0006001 - salt tolerance	
21672	DAO2	OsDAO2, OsCuDAO2, CuDAO2	DIAMINE OXIDASE 2	diamine oxidase 2, Copper-containing diamine oxidase 2	DIAMINE OXIDASE 2		4	LOC_Os04g20164.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0269600	LOC_Os04g20164.1, LOC_Os04g20164.2				GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0006598 - polyamine catabolic process, GO:0008131 - amine oxidase activity, GO:0009308 - amine metabolic process, GO:0048038 - quinone binding	TO:0006001 - salt tolerance	
21673	DAO3	OsDAO3, OsCuDAO3, CuDAO3	DIAMINE OXIDASE 3	diamine oxidase 3, Copper-containing diamine oxidase 3	DIAMINE OXIDASE 3		4	LOC_Os04g04950.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0136200	LOC_Os04g04950.1				GO:0009651 - response to salt stress, GO:0005507 - copper ion binding, GO:0006598 - polyamine catabolic process, GO:0008131 - amine oxidase activity, GO:0009308 - amine metabolic process, GO:0048038 - quinone binding	TO:0006001 - salt tolerance	
21674	DAO4	OsDAO4, OsCuDAO4, CuDAO4	DIAMINE OXIDASE 4	diamine oxidase 4, Copper-containing diamine oxidase 4	DIAMINE OXIDASE 4		4	LOC_Os04g40040.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0476100	LOC_Os04g40040.1				GO:0048038 - quinone binding, GO:0005507 - copper ion binding, GO:0006598 - polyamine catabolic process, GO:0008131 - amine oxidase activity, GO:0009651 - response to salt stress, GO:0009308 - amine metabolic process	TO:0006001 - salt tolerance	
21675	DAO5	OsDAO5, OsCuDAO5, CuDAO5	DIAMINE OXIDASE 5	diamine oxidase 5, Copper-containing diamine oxidase 5	DIAMINE OXIDASE 5		2	LOC_Os02g38010.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0593100	LOC_Os02g37990.1, LOC_Os02g38010.1				GO:0006598 - polyamine catabolic process, GO:0048038 - quinone binding, GO:0009651 - response to salt stress, GO:0009308 - amine metabolic process, GO:0008131 - amine oxidase activity, GO:0005507 - copper ion binding	TO:0006001 - salt tolerance	
21676	_	OsBIANK1, BIANK1, XB25	_	XA21 binding protein 25			9	LOC_Os09g33810.	 Tolerance and resistance - Disease resistance	Os09g0513000	LOC_Os09g33810.1, LOC_Os09g33810.2, LOC_Os09g33810.3, LOC_Os09g33810.4, LOC_Os09g33810.5				GO:0031359 - integral to chloroplast outer membrane, GO:0006952 - defense response, GO:0030941 - chloroplast targeting sequence binding, GO:0045036 - protein targeting to chloroplast	TO:0000112 - disease resistance	
21677	_	Xbos251, XBOS251	_				3	LOC_Os03g63480. Xb25 paralog.		Os03g0851700	LOC_Os03g63480.1				GO:0045036 - protein targeting to chloroplast, GO:0031359 - integral to chloroplast outer membrane, GO:0030941 - chloroplast targeting sequence binding		
21678	_	Xbos252, XBOS252	_				8	LOC_Os08g42690. Xb25 paralog.		Os08g0539600	LOC_Os08g42690.1				GO:0031359 - integral to chloroplast outer membrane, GO:0030941 - chloroplast targeting sequence binding, GO:0045036 - protein targeting to chloroplast		
21679	_	OsBRI1	_				10	Q7G768.		Os10g0114400	LOC_Os10g02500.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0009734 - auxin mediated signaling pathway, GO:0009742 - brassinosteroid mediated signaling, GO:0010305 - leaf vascular tissue pattern formation, GO:0010233 - phloem transport		
21680	_	OsCLVATA, CLVATA	_				2			Os02g0111800	LOC_Os02g02140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
21681	SPL33	LMM5.1, SPL33/LMM5.1, OsSPL33, OsLMM5.1	SPOTTED LEAF 33	spotted leaf 33, Lesion mimic mutant 5.1		spl33, lmm5.1	1	a eukaryotic translation elongation factor 1 alpha (eEF1A)-like protein.	 Tolerance and resistance - Lesion mimic,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os01g0116600	LOC_Os01g02720.1, LOC_Os01g02720.2				GO:0010150 - leaf senescence, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0003746 - translation elongation factor activity, GO:0050832 - defense response to fungus, GO:0009658 - chloroplast organization, GO:0043069 - negative regulation of programmed cell death, GO:0042742 - defense response to bacterium, GO:0031348 - negative regulation of defense response, GO:0005525 - GTP binding, GO:0005783 - endoplasmic reticulum, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0003924 - GTPase activity, GO:0012501 - programmed cell death	TO:0000496 - carotenoid content, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000063 - mimic response, TO:0006007 - polysaccharide content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	PO:0009049 - inflorescence , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
21682	IVD	OsIVD, IVDH, OsIVDH	ISOVALERYL-COA-DEHYDROGENASE	"\"Acyl-coenzyme A dehydrogenase, mitochondrial precursor\", isovalyl coenzyme A dehydrogenase"	ISOVALERYL-COA-DEHYDROGENASE		5	Q75IM9.	 Biochemical character	Os05g0125500	LOC_Os05g03480.2, LOC_Os05g03480.4, LOC_Os05g03480.5				GO:0006552 - leucine catabolic process, GO:0005524 - ATP binding, GO:0050660 - FAD binding, GO:0008470 - isovaleryl-CoA dehydrogenase activity, GO:0005759 - mitochondrial matrix		
21683	_		_	Phosphoenolpyruvate carboxykinase			3	LOC_Os03g15050.1 	 Biochemical character	Os03g0255500	LOC_Os03g15050.1, LOC_Os03g15050.2, LOC_Os03g15050.4				GO:0005829 - cytosol, GO:0006094 - gluconeogenesis, GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity, GO:0016301 - kinase activity, GO:0005524 - ATP binding		
21684	CK1A.3	OsCK1a.3, UCIP10, OsUCIP10, OsCKq1, CKq1	CASEIN KINASE_1A.3	CK1_CaseinKinase_1a.3, Casein Kinase_1a.3, OsUBC26 Interact Protein 10	CASEIN KINASE_1A.3	OsCKq1-GE, OsCKq1-GE0 6-4, OsCKq1-GE0 7-2, OsCKq1-GE0 14-2, OsCKq1-GE0 6-13	1	OsCKq1 in Kim et al. 2024. TO:0000934: photoperiod-sensitive flowering time trait. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Biochemical character	Os01g0772600	LOC_Os01g56580.1, LOC_Os01g56580.2				GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0008360 - regulation of cell shape, GO:0004674 - protein serine/threonine kinase activity, GO:0048573 - photoperiodism, flowering, GO:0018105 - peptidyl-serine phosphorylation	TO:0000576 - stem length, TO:0000137 - days to heading, TO:0000396 - grain yield, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000346 - tiller number, TO:0000391 - seed size, TO:0000229 - photoperiod sensitivity, TO:0000590 - grain weight, TO:0000040 - panicle length	
21685	_		_	Tetratricopeptide-like helical			1	LOC_Os01g29430.2. GO:0080156: mitochondrial mRNA modification.		Os01g0390600	LOC_Os01g29430.1, LOC_Os01g29430.2				GO:0005739 - mitochondrion, GO:0004519 - endonuclease activity, GO:0003723 - RNA binding		
21686	_	OsZFP, ZFP	_	zinc finger protein			1	a C2HC-type zinc finger protein. GO:2000023: regulation of lateral root development.	 Vegetative organ - Root	Os01g0252900	LOC_Os01g14920.1				GO:0009734 - auxin mediated signaling pathway, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0048527 - lateral root development	TO:0000163 - auxin sensitivity, TO:0000656 - root development trait	PO:0007520 - root development stage 
21687	_	OsDW1-01g	_				1	LOC_Os01g01390. one of the two sorghum Dw1 orthologs in rice.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits	Os01g0103800	LOC_Os01g01390.1, LOC_Os01g01390.2, LOC_Os01g01390.3, LOC_Os01g01390.4, LOC_Os01g01390.5					TO:0000207 - plant height, TO:0000484 - seed shape, TO:0000146 - seed length, TO:0000206 - leaf angle	
21688	_	OsDW1-03g	_				3	LOC_Os03g16400. one of the two sorghum Dw1 orthologs in rice.	 Vegetative organ - Leaf,  Seed - Morphological traits,  Vegetative organ - Culm	Os03g0270700	LOC_Os03g16400.1					TO:0000484 - seed shape, TO:0000206 - leaf angle, TO:0000146 - seed length, TO:0000207 - plant height	
21689	_	OsTRM13, OsTrm13, TRM13, Trm13	_	Trm13p homolog			3	LOC_Os03g61750. GO:1901002: positive regulation of response to salt stress. a rice homolog of Saccharomyces cerevisiea Trm13p. methyltransferase-Trm13-domain-containing protein.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0833200	LOC_Os03g61750.1				GO:0030488 - tRNA methylation, GO:0008175 - tRNA methyltransferase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0006002 - proline content, TO:0000495 - chlorophyll content, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
21690	RAM1	OsRAM1, OsGRAS43, GRAS43	_	GRAS protein 43			11	a homologous gene of RAM1 in rice. GO:0036377: arbuscular mycorrhizal association.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0507300	LOC_Os11g31100.1				GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus, GO:0009610 - response to symbiotic fungus, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
21691	_	FCO2	_	Functioning in Cesium Over-transport 2			8		 Biochemical character	Os08g0517200	LOC_Os08g40530.1, LOC_Os08g40530.2				GO:0005516 - calmodulin binding, GO:0046872 - metal ion binding, GO:0030001 - metal ion transport, GO:0000166 - nucleotide binding, GO:0016021 - integral to membrane		
21692	_	FCO6	_	Functioning in Cesium Over-transport 6			1		 Biochemical character	Os01g0546400	LOC_Os01g36580.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0030001 - metal ion transport, GO:0022857 - transmembrane transporter activity, GO:0006810 - transport		
21693	FCO9	OsFCO9, OsDUF6, DUF6	FUNCTIONING IN CESIUM OVER-TRANSPORT 9	Functioning in Cesium Over-transport 9, Domain of Unknown Function protein 9, DUF protein 6, DUF family gene 9	DOMAIN OF UNKNOWN FUNCTION PROTEIN 9		12	GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0518200	LOC_Os12g33300.1				GO:0006810 - transport, GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0030001 - metal ion transport, GO:0005886 - plasma membrane, GO:0055078 - sodium ion homeostasis	TO:0002664 - leaf yellowing tolerance, TO:0000526 - sodium concentration, TO:0000516 - relative root length, TO:0006001 - salt tolerance	
21694	FCO10	OsFCO10, OsSTP13, STP13	FUNCTIONING IN CESIUM OVER-TRANSPORT 10	Functioning in Cesium Over-transport 10, Sugar Transport Protein 13, STP protein 13, monosaccharide transporter STP13	SUGAR TRANSPORTER PROTEIN 13		3	GO:0035428: hexose transmembrane transport.	 Biochemical character	Os03g0101300	LOC_Os03g01170.1				GO:0046323 - glucose import, GO:0005351 - sugar:hydrogen symporter activity, GO:0016021 - integral to membrane, GO:0005355 - glucose transmembrane transporter activity, GO:0030001 - metal ion transport, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016020 - membrane		PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0020104 - leaf sheath 
21695	FCO11	OsFCO11, OsVPE1, VPE1	FUNCTIONING IN CESIUM OVER-TRANSPORT 11	Functioning in Cesium Over-transport 11, vacuolar Pi efflux transporter 1, vacuolar phosphate efflux transporter 1	VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 1	Osvpe1, Osvpe1-1	4	TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0555300	LOC_Os04g46880.2, LOC_Os04g46880.1				GO:0022857 - transmembrane transporter activity, GO:0055062 - phosphate ion homeostasis, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0006817 - phosphate transport, GO:0042594 - response to starvation, GO:0030001 - metal ion transport, GO:0005215 - transporter activity		
21696	TCD11	RPS6, OsRPS6, OsTCD11	THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 11	thermo-sensitive chlorophyll-deficient mutant 11, plastid ribosomal protein S6	PLASTID RIBOSOMAL PROTEIN S6	tcd11	12	LOC_Os12g37610.	 Vegetative organ - Leaf,  Coloration - Others,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os12g0563200	LOC_Os12g37610.1				GO:0009266 - response to temperature stimulus, GO:0042255 - ribosome assembly, GO:0005840 - ribosome, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0070181 - SSU rRNA binding	TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0000432 - temperature response trait, TO:0000326 - leaf color	PO:0025034 - leaf 
21697	_	OsCUL1, CUL1	_	Cullin-1, Cullin 1			1		 Tolerance and resistance - Disease resistance	Os01g0369000	LOC_Os01g27150.2, LOC_Os01g27150.1				GO:0009615 - response to virus, GO:0031625 - ubiquitin protein ligase binding, GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process	TO:0000148 - viral disease resistance	
21698	MAPKKK11	OsMAPKKK11	MAPK KINASE KINASE 11	MAPK kinase kinase 11	MAPK KINASE KINASE 11	Osmapkkk11	7	a rice ortholog of AtMAPKKK5.	 Tolerance and resistance - Disease resistance	Os07g0119000 	LOC_Os07g02780.1				GO:0005737 - cytoplasm, GO:0010200 - response to chitin, GO:0002238 - response to molecule of fungal origin, GO:0043410 - positive regulation of MAPKKK cascade, GO:0005524 - ATP binding, GO:0004702 - receptor signaling protein serine/threonine kinase activity		
21699	MAPKKK18	OsMAPKKK18	MAPK KINASE KINASE 18	MAPK kinase kinase 18	MAPK KINASE KINASE 18		3	a rice ortholog of AtMAPKKK5.	 Tolerance and resistance - Disease resistance	Os03g0764300  	LOC_Os03g55560.1, LOC_Os03g55560.2				GO:0043410 - positive regulation of MAPKKK cascade, GO:0010200 - response to chitin, GO:0002238 - response to molecule of fungal origin, GO:0004702 - receptor signaling protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005524 - ATP binding		
21700	_	BPM	_	2, 3-bisphosphoglycerate-independent phosphoglycerate mutase			1	LOC_Os01g60190.	 Seed,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0817700	LOC_Os01g60190.1, LOC_Os01g60190.2				GO:0005737 - cytoplasm, GO:0030145 - manganese ion binding, GO:0009651 - response to salt stress, GO:0009415 - response to water, GO:0006007 - glucose catabolic process, GO:0004619 - phosphoglycerate mutase activity	TO:0006001 - salt tolerance, TO:0000237 - water stress trait	PO:0007022 - seed imbibition stage 
21701	ARS		ARGININOSUCCINATE SYNTHASE	Argininosuccinate synthase	ARGININOSUCCINATE SYNTHASE		12	LOC_Os12g13320.	 Tolerance and resistance - Stress tolerance,  Seed,  Biochemical character	Os12g0235800	LOC_Os12g13320.1				GO:0005524 - ATP binding, GO:0000053 - argininosuccinate metabolic process, GO:0004055 - argininosuccinate synthase activity, GO:0005737 - cytoplasm, GO:0006526 - arginine biosynthetic process, GO:0000050 - urea cycle, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage 
21702	P0B	ARP, OsP0B	RIBOSOMAL PROTEIN P0B	60S acidic ribosomal protein, ribosomal protein P0B	RIBOSOMAL PROTEIN P0B	osp0b	11		 Tolerance and resistance - Stress tolerance,  Seed	Os11g0135400	LOC_Os11g04070.1				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0042254 - ribosome biogenesis, GO:0005840 - ribosome, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance	PO:0007022 - seed imbibition stage 
21703	CDP3.2	OsCDP3.2, FLOC3, OsFLOC3, OsCDP3.3, CDP3.3	CUPIN DOMAIN CONTAINING PROTEIN 3.2	cupin domain containing protein 3.2, FLO2-interacting cupin domain protein 3, cupin domain protein 3.3	CUPIN DOMAIN CONTAINING PROTEIN 3.2		3	OsCDP3.3 in Peng et al. 2021.	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances	Os03g0336100	LOC_Os03g21790.1				GO:0045735 - nutrient reservoir activity, GO:0009651 - response to salt stress, GO:0048316 - seed development	TO:0006001 - salt tolerance, TO:0000653 - seed development trait	PO:0009010 - seed , PO:0001170 - seed development stage , PO:0007022 - seed imbibition stage 
21704	BMY6		BETA-AMYLASE 6	beta-amylase 6	BETA-AMYLASE 6		10		 Biochemical character	Os10g0565150							
21705	BAMY2	OsBamy2, Bamy2, OsBmy3, Bmy3, OsBMY4, BMY4	BETA-AMYLASE 2	beta-amylase 2	BETA-AMYLASE 2		3	Q10RZ1. OsBmy3 in Liu et al. 2021. OsBMY4 in Guo et al. 2023. GO:0102229: amylopectin maltohydrolase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0141200	LOC_Os03g04770.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process, GO:0051707 - response to other organism		
21706	BAMY4	OsBamy4, Bamy4	BETA-AMYLASE 4	beta-amylase 4	BETA-AMYLASE 4		1	GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os01g0236800	LOC_Os01g13550.1				GO:0000272 - polysaccharide catabolic process, GO:0016161 - beta-amylase activity		
21707	_		_	beta-amylase			9	GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os09g0569200	LOC_Os09g39570.1				GO:0000272 - polysaccharide catabolic process, GO:0016161 - beta-amylase activity		
21708	BMY6	OsBMY6, BAM3, OsBAM3	BETA-AMYLASE 6	beta-amylase, beta-amylase 6, chloroplastic beta-amylase 3	BETA-AMYLASE 6		10	BGIOSGA031385. MH10t0431700. GO:0102229: amylopectin maltohydrolase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0565200	LOC_Os10g41550.1				GO:0010378 - temperature compensation of the circadian clock, GO:0007623 - circadian rhythm, GO:0009409 - response to cold, GO:0009266 - response to temperature stimulus, GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process	TO:0000432 - temperature response trait, TO:0000303 - cold tolerance, TO:0000333 - sugar content	
21709	BMY4	OsBmy4, Bmy4	BETA-AMYLASE 4	beta-amylase 4	BETA-AMYLASE 4		3	GO:0102229: amylopectin maltohydrolase activity.	 Biochemical character	Os03g0351300	LOC_Os03g22790.1				GO:0016161 - beta-amylase activity, GO:0000272 - polysaccharide catabolic process		
21710	CUL3B	OsCUL3b, CUL3b	CULLIN 3B	Cullin3b, Cullin 3b	CULLIN 3B		4			Os04g0643000	LOC_Os04g55030.1				GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0031625 - ubiquitin protein ligase binding, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process		
21711	CUL3BC	OsCUL3c, CUL3c	CULLIN 3C	Cullin3c, Cullin 3c	CULLIN 3C		8		 Tolerance and resistance - Stress tolerance	Os08g0170900	LOC_Os08g07400.1				GO:0009651 - response to salt stress, GO:0042787 - protein ubiquitination during ubiquitin-dependent protein catabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0031625 - ubiquitin protein ligase binding	TO:0006001 - salt tolerance	
21712	_	CYP72A1, OsCYP72A1	_	cytochrome P450 72A1			1		 Tolerance and resistance - Stress tolerance	Os01g0628000	LOC_Os01g43774.1				GO:0009414 - response to water deprivation, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0010332 - response to gamma radiation, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0010212 - response to ionizing radiation	TO:0000161 - radiation response trait, TO:0000276 - drought tolerance	
21713	_	LEA D-34	_	late embryogenesis abundant protein D-34			12	LOC_Os12g43140.	 Tolerance and resistance - Stress tolerance	Os12g0626500	LOC_Os12g43140.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21714	_	MYB	_	MYB transcription factor			6	LOC_Os06g45840.	 Tolerance and resistance - Stress tolerance	Os06g0669700	LOC_Os06g45840.1, LOC_Os06g45840.2				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	
21715	DIR11	OsDIR11, OsjDIR11	DIRIGENT 11	dirigent, Dirigent 11, DIR domain protein 11	DIRIGENT 11		3	GO:0072732: cellular response to calcium ion starvation. GO:0120126: response to copper ion starvation. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os03g0809000	LOC_Os03g59440.1				GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0016036 - cellular response to phosphate starvation, GO:0048046 - apoplast	TO:0000011 - nitrogen sensitivity, TO:0000276 - drought tolerance, TO:0000006 - calcium sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000021 - copper sensitivity	
21716	_	OsPR5, PR5	_	pathogenesis-related gene 5			1	GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Biochemical character	Os01g0122000	LOC_Os01g03180.1				GO:0007275 - multicellular organismal development, GO:0016021 - integral to membrane, GO:0002213 - defense response to insect, GO:0005634 - nucleus, GO:0006952 - defense response, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000179 - biotic stress trait, TO:0000424 - brown planthopper resistance	
21717	EXPA32	OsEXPA32	ALPHA-EXPANSIN 32	expansin A32	ALPHA-EXPANSIN 32		8	Q6YYW5.		Os08g0561900	LOC_Os08g44790.1				GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0016020 - membrane		
21718	EXPA31	OsEXPA31	ALPHA-EXPANSIN 31	expansin A31	ALPHA-EXPANSIN 31		8	Q75I75.	 Vegetative organ - Root	Os03g0428700	LOC_Os03g31480.1				GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall, GO:0009664 - plant-type cell wall organization	TO:0000306 - root thickness	
21719	_	LMM5.4	_	Lesion mimic mutant 5.4		lmm5.4	4	eukaryotic translation elongation factor 1A-like gene family member.	 Tolerance and resistance - Lesion mimic	Os04g0595300					GO:0050832 - defense response to fungus, GO:0003746 - translation elongation factor activity, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005622 - intracellular, GO:0008270 - zinc ion binding, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium, GO:0043069 - negative regulation of programmed cell death	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance	
21720	_	OsAP10, AP10	_	Aspartic proteinase oryzasin-1			1		 Biochemical character	Os01g0663400	LOC_Os01g47410.1, LOC_Os01g47410.2				GO:0004190 - aspartic-type endopeptidase activity, GO:0030163 - protein catabolic process, GO:0006629 - lipid metabolic process, GO:0006508 - proteolysis		
21721	_	OsAAO3, AAO3	_	aldehyde oxidase 3			7	LOC_Os07g18154.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0282300	LOC_Os07g18154.1, LOC_Os07g18154.2				GO:0046872 - metal ion binding, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0004031 - aldehyde oxidase activity, GO:0009055 - electron carrier activity, GO:0050660 - FAD binding, GO:0009651 - response to salt stress, GO:0005829 - cytosol, GO:0009851 - auxin biosynthetic process, GO:0009688 - abscisic acid biosynthetic process, GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors	TO:0006001 - salt tolerance	
21722	DPW2	OsDPW2	DEFECTIVE POLLEN WALL 2	defective pollen wall 2		dpw2, dpw2-1, dpw2-2	1	LOC_Os01g70025 in Xu et al. 2016 and Pu et al. 2017. (The locus name was not found in MSU Rice Genome Annotation Project Release 7 data)  The RapID: Os01g0924933 was derived from the amino acid sequence in Fig.4D of Xu et al. 2016. TO:0020076: phenolic compound content. BAHD acyltransferase.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0924933					GO:0010208 - pollen wall assembly, GO:0005737 - cytoplasm, GO:0007067 - mitosis, GO:0010152 - pollen maturation, GO:0048653 - anther development, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009555 - pollen development	TO:0000281 - metabolite content related trait, TO:0000437 - male sterility, TO:0000215 - stamen anatomy and morphology trait, TO:0000187 - anther color	PO:0020048 - microspore , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009071 - anther wall tapetum 
21723	FTIP1	OsFTIP1, OsC2DP55, C2DP55	FT-INTERACTING PROTEIN 1	FT-INTERACTING PROTEIN1, C2 Domain-Containing Protein 55	FT-INTERACTING PROTEIN 1	Osftip1-1, Osftip1-2	6	a rice ortholog of Arabidopsis FTIP1. a member of the family of multiple C2 domain and transmembrane region proteins (MCTPs).	 Biochemical character,  Reproductive organ - Heading date	Os06g0614000 	LOC_Os06g41090.1				GO:0051223 - regulation of protein transport, GO:0005783 - endoplasmic reticulum, GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0005417 - phloem , PO:0000071 - companion cell 
21724	_	OsUbDKgamma4, UbDKgamma4	_	Ubiquitin-Like Domain Kinase gamma 4		OsUbDKg4, Osubdkg4-1, Osubdkg4-2	2		 Reproductive organ - Heading date	Os02g0290500 	LOC_Os02g18840.1				GO:0045732 - positive regulation of protein catabolic process, GO:0016301 - kinase activity, GO:0048586 - regulation of long-day photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
21725	_	Xa10-Ni	_	Xa10-like gene			11	LOC_Os11g37570. TO:0006047: calcium concentration.	 Tolerance and resistance - Disease resistance	Os11g0586400	LOC_Os11g37570.1				GO:0051924 - regulation of calcium ion transport, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0005783 - endoplasmic reticulum, GO:0010942 - positive regulation of cell death	TO:0000175 - bacterial blight disease resistance	
21726	_	OsEno1, Eno1	_	enolase 1			9	plastidic enolase.	 Biochemical character	Os09g0375000	LOC_Os09g20820.1				GO:0006096 - glycolysis, GO:0010090 - trichome morphogenesis, GO:0009735 - response to cytokinin stimulus, GO:0009570 - chloroplast stroma, GO:0004634 - phosphopyruvate hydratase activity, GO:0000287 - magnesium ion binding, GO:0000015 - phosphopyruvate hydratase complex		PO:0009010 - seed , PO:0020104 - leaf sheath 
21727	_	OsEno3, Eno3	_	enolase 3			3	plastidic enolase. AB917428.	 Vegetative organ - Leaf,  Biochemical character	Os03g0266200	LOC_Os03g15950.1				GO:0006096 - glycolysis, GO:0000015 - phosphopyruvate hydratase complex, GO:0000287 - magnesium ion binding, GO:0048366 - leaf development, GO:0004634 - phosphopyruvate hydratase activity	TO:0000655 - leaf development trait	PO:0005020 - vascular bundle , PO:0009010 - seed , PO:0001050 - leaf development stage 
21728	_	OsEno6, Eno6	_	enolase 6				AK107411.	 Biochemical character								
21729	_	OsAGSW1, AGSW1	_	ABC1-like kinase related to Grain size and Weight 1			5	LOC_Os05g25840. TO:0020109: vascular bundle development trait.	 Seed - Morphological traits	Os05g0323800	LOC_Os05g25840.1, LOC_Os05g25840.3				GO:0010618 - aerenchyma formation, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009507 - chloroplast, GO:0010051 - xylem and phloem pattern formation, GO:0051302 - regulation of cell division	TO:0002762 - width of grain with hull, TO:0002661 - seed maturation, TO:0002761 - length of grain with hull, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000382 - 1000-seed weight, TO:0000484 - seed shape, TO:0000391 - seed size	PO:0005020 - vascular bundle 
21730	_	PigmR	_	Magnaporthe grisea resistance-gmR, Blast resistance gmR			6	KU904633 (indica): Pigm_GM4.7, NBS-LRR type R protein Pigm-R6. APF29096.2. (between Os06g0286500 and Os06g0287500). PigmR confers broad-spectrum resistance. (Dang et al. 2017)	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000396 - grain yield, TO:0000180 - spikelet fertility, TO:0000590 - grain weight, TO:0000382 - 1000-seed weight	
21731	_	PigmS	_	Magnaporthe grisea resistance-gmS, Blast resistance gmS			6	KU904633 (indica): Pigm_GM4.10, NBS-LRR type R protein Pigm-R8. APF29097.1. (between Os06g0286500 and Os06g0287500). PigmS competitively attenuates PigmR homodimerization to suppress resistance. (Dang et al. 2017) GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity						GO:0050832 - defense response to fungus, GO:0031348 - negative regulation of defense response	TO:0000180 - spikelet fertility, TO:0000590 - grain weight, TO:0000074 - blast disease, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield	
21732	LBD37	OsLBD37, OsLBD3-8, LBD3-8	LATERAL ORGAN BOUNDARIES DOMAIN 37	lateral organ boundaries domain protein 37, LBD-CONTAINING PROTEIN 37	LATERAL ORGAN BOUNDARIES DOMAIN PROTEIN 37		3	similar to AtLBD37. OsLBD3-8 in Kawai et al. 2022. GO:1901698: response to nitrogen compound. 	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os03g0445700	LOC_Os03g33090.1				GO:0005634 - nucleus, GO:2000028 - regulation of photoperiodism, flowering, GO:0048573 - photoperiodism, flowering, GO:0048511 - rhythmic process, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048437 - floral organ development	TO:0000011 - nitrogen sensitivity, TO:0000137 - days to heading, TO:0000371 - yield trait, TO:0002616 - flowering time, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000447 - filled grain number	PO:0000016 - lateral root primordium 
21733	LBD38	OsLBD38, HINGE2, OsHINGE2, LOB39, OsLOB39	LATERAL ORGAN BOUNDARIES DOMAIN 38	lateral organ boundaries domain protein 38, Highly Induced by Nitrate Gene 2	LATERAL ORGAN BOUNDARIES DOMAIN 38		3	similar to AtLBD37. TO:0020098: nitrate sensitivity. GO:1901698: response to nitrogen compound.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0609500	LOC_Os03g41330.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010167 - response to nitrate, GO:0003700 - transcription factor activity, GO:0009414 - response to water deprivation, GO:0048511 - rhythmic process, GO:0005634 - nucleus, GO:0048573 - photoperiodism, flowering, GO:2000028 - regulation of photoperiodism, flowering, GO:0019740 - nitrogen utilization	TO:0000371 - yield trait, TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000011 - nitrogen sensitivity, TO:0000137 - days to heading, TO:0000040 - panicle length, TO:0000153 - relative yield, TO:0000276 - drought tolerance, TO:0000447 - filled grain number	
21734	MAPKKKEPSILON	OsMAPKKKepsilon, MAPKKKepsilon, OsMAPKKK24, MAPKKK24	MAPK KINASE KINASE EPSILON	MAPK kinase kinase epsilon, MAPK kinase kinase 24	MAPK KINASE KINASE EPSILON		4	GO:0023014:  signal transduction by protein phosphorylation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0660500	LOC_Os04g56530.1				GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0032147 - activation of protein kinase activity, GO:0031098 - stress-activated protein kinase signaling pathway, GO:0050832 - defense response to fungus, GO:0000165 - MAPKKK cascade, GO:0007346 - regulation of mitotic cell cycle	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
21735	_	OsMAPKKKalpha, MAPKKKalpha	_	MAPK kinase kinase alpha			11	LOC_Os11g10100. GO:0023014:  signal transduction by protein phosphorylation.		Os11g0207200	LOC_Os11g10100.1, LOC_Os11g10100.2, LOC_Os11g10100.3				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0007346 - regulation of mitotic cell cycle, GO:0032147 - activation of protein kinase activity, GO:0031098 - stress-activated protein kinase signaling pathway		
21736	WSP1	OsWSP1, OsMORF2b, MORF2b, OsMORF2, OsMORF2/WSP1	WHITE-STRIPE LEAVES AND PANICLES 1	white-stripe leaves and panicles 1, multiple organellar RNA editing factor 2b	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2B	wsp1	4	RNA editing factor. MORF Family Protein. a MORF2-like protein. the homolog of MORF2 in A. thaliana.OsMORF2 in Wang et al. 2020. GO:1900865: chloroplast RNA modification. PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os04g0601800	LOC_Os04g51280.1				GO:0009651 - response to salt stress, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0008380 - RNA splicing, GO:0048366 - leaf development, GO:0009451 - RNA modification, GO:0009409 - response to cold, GO:0042254 - ribosome biogenesis	TO:0000303 - cold tolerance, TO:0000495 - chlorophyll content, TO:0000201 - panicle color, TO:0000655 - leaf development trait, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0001050 - leaf development stage , PO:0009049 - inflorescence 
21737	_	Pi-jnw1	_	PYRICULARIA ORYZAE RESISTANCE JNW1			11	a Blast Resistant Gene Pi-jnw1 from the japonica Rice Landrace Jiangnanwian. Pi-jnw1 was finally mapped to the 282 kb region between markers W28 and BS39.	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	
21738	P5CR	OsP5CR	PYRROLINE-5-CARBOXYLATE REDUCTASE	delta-pyrroline-5-carboxylate reductase, pyrroline-5-carboxylate reductase	PYRROLINE-5-CARBOXYLATE REDUCTASE		1	GO:0055129: L-proline biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0948400	LOC_Os01g71990.1				GO:0006970 - response to osmotic stress, GO:0005618 - cell wall, GO:0006561 - proline biosynthetic process, GO:0010033 - response to organic substance, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0004735 - pyrroline-5-carboxylate reductase activity	TO:0000095 - osmotic response sensitivity, TO:0006002 - proline content, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
21739	ECK1	OsECK1	EXTRACELLULAR KINASE 1	receptor protein kinase, Extracellular kinase-1	EXTRACELLULAR KINASE 1		2		 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0710500	LOC_Os02g48080.1				GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0002237 - response to molecule of bacterial origin, GO:0005886 - plasma membrane, GO:0051607 - defense response to virus, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000255 - sheath blight disease resistance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance	PO:0009005 - root 
21740	BKL		BLANKET LEAF				6	a hairy-leaf gene from Oryza nivara. BKL tightly linked to SSR marker RM30 and located between SSR markers RM3567 and RM7243 at map distances of 5.8 and 1.1 cM, respectively.	 Vegetative organ - Leaf							TO:0001018 - transpiration rate, TO:0000504 - leaf temperature, TO:0002722 - leaf pubescence, TO:0001017 - water use efficiency	
21741	PDX1.3C	OsPDX1.3c, OsPDX1.3, PDX1.3	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3C	PYRIDOXINE BIOSYNTHESIS PROTEIN1.3c, Pyridoxal phosphate synthase protein 1.3	PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3C		11	OsPDX1.3 in Nan et al. 2019, Liu et al. 2022. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0708500	LOC_Os11g48080.1				GO:0042819 - vitamin B6 biosynthetic process, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0042742 - defense response to bacterium, GO:0003824 - catalytic activity, GO:0042823 - pyridoxal phosphate biosynthetic process	TO:0000203 - bacterial leaf streak disease resistance	
21742	_		_				1	a putative heat and acid stable phosphoprotein.		Os01g0752800 	LOC_Os01g54920.1, LOC_Os01g54920.2						
21743	MSH6	OsMsh6, Msh6, OsMSH6	MUTS MISMATCH REPAIR HOMOLOG PROTEIN 6	AtMsh6 homolog, MutS mismatch repair homolog protein 6, Mutated S homologue 6	MUTS MISMATCH REPAIR HOMOLOG PROTEIN 6	msh6, Osmsh6	9	a homologue to AtMsh6 (At4g02070) in the MMR system of A. thaliana. OsMsh6 deficiency resulted in spontaneous generation of a wide variety of single-nucleotide mutations. Therefore the mutated OsMsh6 can be regarded as a mutator. GO:0035825: homologous recombination. GO:0097752: regulation of DNA stability.	 Tolerance and resistance - Stress tolerance	Os09g0407600	LOC_Os09g24220.1				GO:0005524 - ATP binding, GO:0046686 - response to cadmium ion, GO:0008094 - DNA-dependent ATPase activity, GO:0000404 - loop DNA binding, GO:0005634 - nucleus, GO:0051726 - regulation of cell cycle, GO:0003684 - damaged DNA binding, GO:0043570 - maintenance of DNA repeat elements, GO:0032300 - mismatch repair complex, GO:0030983 - mismatched DNA binding, GO:0006298 - mismatch repair		
21744	DGS2	RPC4a, RPC4b, RPC4c, RPC4d, RPC4e	DUPLICATED GAMETOPHYTIC STERILITY 2	RNA polymerase III subunit C4a, RNA polymerase III subunit C4b, RNA polymerase III subunit C4c, RNA polymerase III subunit C4d, RNA polymerase III subunit C4e			7	Oryza nivara allele DGS2-nivara+ region has five tandem copies of RPC4 (RPC4a-e) and there are absence of the duplicated gene at Oryza sativa allele DGS2-T65s region. RPC4a (AB758281), RPC4b (AB758282), RPC4c (AB758283), RPC4d (AB758284), and RPC4e (AB758285).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility							TO:0000053 - pollen sterility	
21745	RDN	OsRDN, OsRDN1, RDN1	ROOT DETERMINED NODULATION	ROOT DETERMINED NODULATION 1			1	LOC_Os01g16600. TO:0000900: root nodule number. an enzyme of hydroxyproline O-arabinosyltransferase (HPAT/RDN) family.	 Biochemical character,  Vegetative organ - Root	Os01g0272600	LOC_Os01g16600.1				GO:0009877 - nodulation		PO:0009005 - root 
21746	WFSL1		WHITE FINE STRIPE LEAF 1	white fine stripe leaf 1	WHITE FINE STRIPE LEAF 1	wfsl1	1	LOC_Os01g01920.	 Biochemical character,  Coloration - Chlorophyll	Os01g0109300	LOC_Os01g01920.1, LOC_Os01g01920.2				GO:0010109 - regulation of photosynthesis, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0008832 - dGTPase activity, GO:0006203 - dGTP catabolic process, GO:0042254 - ribosome biogenesis	TO:0000396 - grain yield, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0002715 - chloroplast development trait	PO:0025034 - leaf , PO:0020104 - leaf sheath 
21748	PRXIIC	OsPrxII C, PrxII C, OsPrxIIC, PrxIIC	TYPE-II PEROXIREDOXIN C	Type-II Prx C, Type-II peroxiredoxin C	TYPE-II PEROXIREDOXIN C		1	Q9FR35.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0675100	LOC_Os01g48420.1				GO:0045454 - cell redox homeostasis, GO:0051920 - peroxiredoxin activity, GO:0010269 - response to selenium ion, GO:0004601 - peroxidase activity, GO:0046686 - response to cadmium ion	TO:0000032 - selenium sensitivity	
21749	PRXIIE3	OsPrxII E3, PrxII E3, OsPrxIIE3, PrxIIE3	TYPE-II PEROXIREDOXIN E3	Type-II Prx E3, Type-II peroxiredoxin E3	TYPE-II PEROXIREDOXIN E3		1	LOC_Os01g24740.			LOC_Os01g24740						
21750	PRXIIE1	OsPrxII E1, PrxII E1, OsPrxIIE1, PrxIIE1	TYPE-II PEROXIREDOXIN E1	Type-II Prx E1, Type-II peroxiredoxin E1	TYPE-II PEROXIREDOXIN E1		6	LOC_Os06g42000. Q69TY4.	 Biochemical character	Os06g0625500	LOC_Os06g42000.1				GO:0045454 - cell redox homeostasis, GO:0004601 - peroxidase activity, GO:0051920 - peroxiredoxin activity		
21751	PRXIIF	OsPrxII F, PrxII F, OsPrxIIF, PrxIIF	TYPE-II PEROXIREDOXIN F	Type-II Prx F, Type-II peroxiredoxin F	TYPE-II PEROXIREDOXIN F		1	LOC_Os01g16152. Q9SDD6.	 Biochemical character	Os01g0266600	LOC_Os01g16152.1				GO:0045454 - cell redox homeostasis, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress, GO:0046686 - response to cadmium ion, GO:0051920 - peroxiredoxin activity		
21752	PRXQ	OsPrx Q, Prx Q, OsPrxQ, PrxQ	PEROXIREDOXIN Q	peroxiredoxin Q	PEROXIREDOXIN Q		6	LOC_Os06g09610. P0C5D5. P0C5D4.	 Biochemical character	Os06g0196300	LOC_Os06g09610.1, LOC_Os06g09610.2				GO:0004601 - peroxidase activity, GO:0051920 - peroxiredoxin activity, GO:0045454 - cell redox homeostasis		PO:0009006 - shoot system , PO:0025034 - leaf 
21753	1CYSPRXA	Os1-CysPrxA, 1-CysPrxA, OsPER1, PER1	1-CYS PEROXIREDOXIN A	1 Cys-peroxiredoxin	1-CYS PEROXIREDOXIN A		7	P0C5C9.	 Biochemical character,  Seed	Os07g0638300	LOC_Os07g44430.1				GO:0045454 - cell redox homeostasis, GO:0004601 - peroxidase activity, GO:0048316 - seed development, GO:0051920 - peroxiredoxin activity	TO:0000430 - germination rate	PO:0007633 - endosperm development stage , PO:0009010 - seed , PO:0009089 - endosperm 
21754	_	OsAM1, AM1	_				4	K+ efflux antiporter.	 Biochemical character	Os04g0682800	LOC_Os04g58620.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0015386 - potassium:hydrogen antiporter activity, GO:0006813 - potassium ion transport		
21755	SLAC7	OsSLAC7	SLOW ANION CHANNEL 7	SLOW ANION CHANNEL-ASSOCIATED 7	SLOW ANION CHANNEL 7	slac7-1	1	GO:1904821: chloroplast disassembly. GO:0090333: regulation of stomatal closure.	 Vegetative organ - Culm,  Vegetative organ - Root,  Vegetative organ - Leaf,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Coloration - Chlorophyll	Os01g0385400	LOC_Os01g28840.1				GO:0009651 - response to salt stress, GO:0010119 - regulation of stomatal movement, GO:0030104 - water homeostasis, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0006873 - cellular ion homeostasis, GO:0008308 - voltage-gated anion channel activity, GO:0009416 - response to light stimulus, GO:0010117 - photoprotection, GO:0048573 - photoperiodism, flowering	TO:0000492 - leaf shape, TO:0000075 - light sensitivity, TO:0002667 - abscisic acid content, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000089 - panicle type, TO:0000316 - photosynthetic ability, TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0000227 - root length, TO:0000207 - plant height, TO:0002655 - starch grain size, TO:0000522 - stomatal conductance, TO:0000495 - chlorophyll content	PO:0020104 - leaf sheath 
21756	_	SLAC, OsSLAC	_	SLOW ANION CHANNEL, C4-dicarboxylate malic acid transporter			1	One of nine SLAC genes in rice. miR5493-target.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Biochemical character	Os01g0226600	LOC_Os01g12680.4, LOC_Os01g12680.1, LOC_Os01g12680.2, LOC_Os01g12680.3				GO:0055085 - transmembrane transport	TO:0006032 - panicle size, TO:0000396 - grain yield	
21757	_	SLAC	_	SLOW ANION CHANNEL			1	One of nine SLAC genes in rice.	 Biochemical character	Os01g0247700	LOC_Os01g14520.1				GO:0055085 - transmembrane transport		
21758	_	SLAC	_	SLOW ANION CHANNEL			1	One of nine SLAC genes in rice.	 Biochemical character	Os01g0623200	LOC_Os01g43460.1, LOC_Os01g43460.2				GO:0055085 - transmembrane transport		
21759	_	SLAC	_	SLOW ANION CHANNEL			5	One of nine SLAC genes in rice.	 Biochemical character	Os05g0219900	LOC_Os05g13320.1				GO:0006873 - cellular ion homeostasis, GO:0008308 - voltage-gated anion channel activity		
21760	_	SLAC	_	SLOW ANION CHANNEL			5	One of nine SLAC genes in rice.	 Biochemical character	Os05g0269200	LOC_Os05g18670.1				GO:0055085 - transmembrane transport		
21761	_	SLAC	_	SLOW ANION CHANNEL			5	One of nine SLAC genes in rice.	 Biochemical character	Os05g0584900	LOC_Os05g50770.2				GO:0055085 - transmembrane transport		
21762	_	SLAC	_	SLOW ANION CHANNEL			7	One of nine SLAC genes in rice.	 Biochemical character	Os07g0181100	LOC_Os07g08350.1				GO:0006873 - cellular ion homeostasis, GO:0008308 - voltage-gated anion channel activity		
21763	_	Os-MYB2, OsMYB2, MYB2	_				3			Os03g0371800	LOC_Os03g25550.1				GO:0003677 - DNA binding		
21764	MYB39	Os-MYB39, OsMYB39, Os2R_MYB43, 2R_MYB43	MYB TRANSCRIPTION FACTOR 39	R2R3-MYB Transcription Factor 43	MYB TRANSCRIPTION FACTOR 39		4	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding. GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting. GO:0044212: transcription regulatory region DNA binding.	 Other	Os04g0461000	LOC_Os04g38740.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0030154 - cell differentiation, GO:0006357 - regulation of transcription from RNA polymerase II promoter		
21765	SQD2.1	OsSQD2.1	SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.1	sulfoquinovosyl transferase-like protein 2.1, Sulfoquinovosyldiacylglycerol synthase 2.1	SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.1	sqd2.1, sqd2.1-1, sqd2.1-2	7	GO:0072593: reactive oxygen species metabolic process. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0100300	LOC_Os07g01030.1				GO:0009414 - response to water deprivation, GO:0009941 - chloroplast envelope, GO:0006979 - response to oxidative stress, GO:0042594 - response to starvation, GO:0009651 - response to salt stress, GO:0009812 - flavonoid metabolic process, GO:0005737 - cytoplasm, GO:0046506 - sulfolipid biosynthetic process, GO:0009247 - glycolipid biosynthetic process, GO:0006970 - response to osmotic stress, GO:0046510 - UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0002657 - oxidative stress	PO:0025034 - leaf 
21766	PLS2	SQD2.3, OsSQD2.3	PREMATURE LEAF SENESCENT 2	sulfoquinovosyl transferase-like protein 2.3, Sulfoquinovosyldiacylglycerol synthase 2.3, Premature Leaf Senescent 2, premature leaf senescence 2	SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.3	pls2	3		 Vegetative organ - Leaf,  Biochemical character	Os03g0265100	LOC_Os03g15840.1				GO:0009941 - chloroplast envelope, GO:0046506 - sulfolipid biosynthetic process, GO:0005737 - cytoplasm, GO:0010150 - leaf senescence, GO:0046510 - UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0009247 - glycolipid biosynthetic process	TO:0000249 - leaf senescence, TO:0000522 - stomatal conductance, TO:0001027 - net photosynthetic rate, TO:0000605 - hydrogen peroxide content, TO:0001018 - transpiration rate, TO:0000328 - sucrose content, TO:0000326 - leaf color	PO:0001054 - 4 leaf senescence stage , PO:0005645 - leaf mesophyll 
21767	MEICA1		MEIOTIC CHROMOSOME ASSOCIATION 1	Meiotic Chromosome Association 1		meica1	3	LOC_Os03g05040. GO:1990918: double-strand break repair involved in meiotic recombination.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os03g0144000	LOC_Os03g05040.1				GO:0010520 - regulation of reciprocal meiotic recombination, GO:0000710 - meiotic mismatch repair, GO:0045132 - meiotic chromosome segregation	TO:0000180 - spikelet fertility, TO:0000421 - pollen fertility, TO:0000485 - sterility related trait	
21768	_		_	cytochrome c			1		 Biochemical character,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os01g0885000 	LOC_Os01g66180.1, LOC_Os01g66180.2				GO:0020037 - heme binding, GO:0009055 - electron carrier activity, GO:0005758 - mitochondrial intermembrane space, GO:0046872 - metal ion binding, GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen, GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c	TO:0000346 - tiller number, TO:0000207 - plant height	
21769	MYB45	OsMPH1, MPH1, OsMYB45, DLN171, OsDLN171, OsMYB-R1, MYB-R1, CRPG17, OsCRPG17	MYB TRANSCRIPTION FACTOR 45	MYB-like gene of Plant Height 1, transcription factor OsMYB45, MYB protein 45, DLN repressor 171, DLN motif protein 171, collar region-preferential gene 17	MYB TRANSCRIPTION FACTOR 45	osmyb45	6	one of five transcription factors downstream of LG1 (Jiang et al. 2023). GO:0099402: plant organ development.	 Reproductive organ - Panicle, Mode of branching,  Tolerance and resistance - Stress tolerance,  Character as QTL - Germination,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os06g0670300	LOC_Os06g45890.1				GO:0009826 - unidimensional cell growth, GO:0009845 - seed germination, GO:0009413 - response to flooding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0046686 - response to cadmium ion	TO:0000396 - grain yield, TO:0006032 - panicle size, TO:0002616 - flowering time, TO:0000547 - primary branch number, TO:0000145 - internode length, TO:0000557 - secondary branch number, TO:0000524 - submergence tolerance, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height	PO:0025034 - leaf , PO:0009029 - stamen , PO:0020121 - lateral root , PO:0009000 - pulvinus , PO:0020141 - stem node , PO:0007045 - coleoptile emergence stage , PO:0006012 - leaf collar , PO:0007057 - 0 seed germination stage 
21770	UEV1A	OsUEV1A	UBC-E2 VARIANT 1A	Ubc-E2 variant 1A, ubiquitin-conjugating enzyme variant protein 1A, Ubc enzyme variant protein 1A	UBC-E2 VARIANT 1A		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0712300	LOC_Os03g50440.1				GO:0070534 - protein K63-linked ubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006301 - postreplication repair, GO:0016020 - membrane, GO:0031625 - ubiquitin protein ligase binding, GO:0006974 - response to DNA damage stimulus		
21771	UEV1D	OsUEV1D	UBC-E2 VARIANT 1D	Ubc-E2 variant 1D, ubiquitin-conjugating enzyme variant protein 1D, Ubc enzyme variant protein 1D	UBC-E2 VARIANT 1D		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0684800	LOC_Os04g58800.1, LOC_Os04g58800.2				GO:0004842 - ubiquitin-protein ligase activity, GO:0031625 - ubiquitin protein ligase binding, GO:0009414 - response to water deprivation, GO:0006301 - postreplication repair, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0006974 - response to DNA damage stimulus, GO:0070534 - protein K63-linked ubiquitination, GO:0032502 - developmental process	TO:0000276 - drought tolerance	PO:0025034 - leaf 
21772	GWD1	OsGWD1	ALPHA-GLUCAN, WATER DIKINASE 1	"\"alpha-glucan, water dikinase 1\", \"Glucan, Water-Dikinase 1\""	ALPHA-GLUCAN, WATER DIKINASE 1	gwd1	6	GO:2000883: positive regulation of starch catabolic process. TO:0001109: grain color trait. TO:0000975: grain width. TO:0001069: cooking quality trait.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Physiological traits,  Vegetative organ - Culm,  Character as QTL - Germination,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Taste	Os06g0498400 	LOC_Os06g30310.1				GO:0005983 - starch catabolic process, GO:0009414 - response to water deprivation, GO:0016301 - kinase activity, GO:0005524 - ATP binding, GO:0010030 - positive regulation of seed germination, GO:0009651 - response to salt stress	TO:0000734 - grain length, TO:0000462 - gelatinization temperature, TO:0000449 - grain yield per plant, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000412 - setback viscosity, TO:0000374 - breakdown viscosity, TO:0000379 - cool paste viscosity, TO:0000408 - hot paste viscosity, TO:0000409 - peak viscosity, TO:0000696 - starch content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000266 - chalky endosperm, TO:0002730 - grain shape, TO:0000162 - seed quality, TO:0000371 - yield trait, TO:0002661 - seed maturation	PO:0025034 - leaf , PO:0007057 - 0 seed germination stage 
21773	PRF1	OsPRF1	PROFILIN 1	Profilin-1, Profilin 1	PROFILIN 1		10	LOC_Os10g17660. Q9FUD1.		Os10g0323600	LOC_Os10g17660.1				GO:0005938 - cell cortex, GO:0015629 - actin cytoskeleton, GO:0042989 - sequestering of actin monomers, GO:0003785 - actin monomer binding		
21774	_	OsFH15, FH15	_	formin homology 15, forming family protein 15, FH2 protein 15, FH2 domain protein 15		Osfh15	9	LOC_ Os09g34180. Q69MT2. class I forming.	 Seed - Morphological traits - Grain shape	Os09g0517600	LOC_Os09g34180.1				GO:0008017 - microtubule binding, GO:0016020 - membrane, GO:0051016 - barbed-end actin filament capping, GO:0001558 - regulation of cell growth, GO:0051015 - actin filament binding, GO:0032233 - positive regulation of actin filament bundle formation, GO:0030041 - actin filament polymerization, GO:0016021 - integral to membrane	TO:0000397 - grain size	PO:0009010 - seed , PO:0009051 - spikelet , PO:0020148 - shoot apical meristem 
21775	FH3	OsFH3	FORMIN HOMOLOGY 3	formin homology 3, forming family protein 3, FH2 protein 3, FH2 domain protein 3	FORMIN HOMOLOGY 3	osfh3	10	Q7G6K7.	 Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Culm,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os10g0119300	LOC_Os10g02980.1				GO:0008017 - microtubule binding, GO:0004721 - phosphoprotein phosphatase activity, GO:0009653 - anatomical structure morphogenesis, GO:0007015 - actin filament organization, GO:0045010 - actin nucleation, GO:0051016 - barbed-end actin filament capping, GO:0009590 - detection of gravity, GO:0005737 - cytoplasm	TO:0000547 - primary branch number, TO:0000146 - seed length, TO:0000207 - plant height, TO:0000043 - root anatomy and morphology trait, TO:0000391 - seed size	
21776	_	OsFH4, FH4	_	formin homology 4, forming family protein 4, FH2 protein 4, FH2 domain protein 4			10	Q8H8K7.		Os10g0347800	LOC_Os10g20710.1				GO:0016021 - integral to membrane, GO:0016020 - membrane		
21777	FH6	OsFH6	FORMIN HOMOLOGY 6	formin homology 6, forming family protein 6, FH2 protein 6, FH2 domain protein 6			8	Q6ZCX3. Extensin family protein.		Os08g0280200	LOC_Os08g17820.1, LOC_Os08g17820.2				GO:0004721 - phosphoprotein phosphatase activity		
21778	_	OsFH7, FH7	_	formin homology 7, forming family protein 7, FH2 protein 7, FH2 domain protein 7Os02g0794700, Os02g0794900			2	Q6K8Z4.		Os02g0794900	LOC_Os02g55150.1, LOC_Os02g55150.2, LOC_Os02g55170.1				GO:0004721 - phosphoprotein phosphatase activity		
21779	_	OsFH8, FH8	_	formin homology 8, forming family protein 8, FH2 protein 8, FH2 domain protein 8			3	Q10Q99.		Os03g0204100	LOC_Os03g10680.1				GO:0016021 - integral to membrane, GO:0016020 - membrane		
21780	_	OsFH9, FH9	_	formin homology 9, forming family protein 9, FH2 protein 9, FH2 domain protein 9			8	Q6ZKB2.		Os08g0431200	LOC_Os08g33430.1				GO:0016020 - membrane, GO:0016021 - integral to membrane		
21781	_	OsFH10, FH10	_	formin homology 10, forming family protein 10, FH2 protein 10, FH2 domain protein 10			2	Q6H7U3.		Os02g0161100	LOC_Os02g06580.1				GO:0016021 - integral to membrane, GO:0016020 - membrane		
21782	_	OsFH12, FH12, OsPP62, OsSTA117, PP62, STA117	_	formin homology 12, forming family protein 12, FH2 protein 12, FH2 domain protein 12, Protein phosphatase 62			4	Q7XWS7. a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0245000	LOC_Os04g17130.1				GO:0004721 - phosphoprotein phosphatase activity, GO:0045010 - actin nucleation, GO:0005884 - actin filament		PO:0009066 - anther 
21783	_	OsFH13, FH13	_	formin homology 13, forming family protein 13, FH2 protein 13, FH2 domain protein 13			7	LOC_Os07g39920.1 Q0D519. Extensin family protein.		Os07g0588200	LOC_Os07g39920.1				GO:0016020 - membrane, GO:0016021 - integral to membrane		
21784	_	OsFH14, FH14	_	formin homology 14, forming family protein 14, FH2 protein 14, FH2 domain protein 14			5	Q0DLG0.		Os05g0104000/Os05g0104100	LOC_Os05g01350.1, LOC_Os05g01360.1				GO:0016021 - integral to membrane, GO:0005829 - cytosol, GO:0016020 - membrane		
21785	_	OsFH16, FH16	_	formin homology 16, forming family protein 16, FH2 protein 16, FH2 domain protein 16			2	A3AB67.		Os02g0739100	LOC_Os02g50570.1				GO:0016021 - integral to membrane, GO:0016020 - membrane		
21786	SPS3	OsSPS3	SOLANESYL-PP SYNTHASE 3	solanesyl diphosphate synthase 3, solanesyl-PP synthase 3, SPP synthase 3	SOLANESYL-PP SYNTHASE 3		12	Q0INZ4. GO:0052923: all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity.	 Biochemical character	Os12g0271700	LOC_Os12g17320.1				GO:0009507 - chloroplast, GO:0009570 - chloroplast stroma, GO:0009739 - response to gibberellin stimulus, GO:0015979 - photosynthesis, GO:0050347 - trans-octaprenyltranstransferase activity, GO:0046872 - metal ion binding, GO:0008299 - isoprenoid biosynthetic process	TO:0000166 - gibberellic acid sensitivity	
21787	FBN5	OsFBN5	FIBRILLIN 5	fibrillin5, fibrillin 5	FIBRILLIN 5	Osfbn5, Osfbn5-1, Osfbn5-2	4	rice ortholog of Arabidopsis FBN5 (AtFBN5).	 Biochemical character	Os04g0422000	LOC_Os04g34460.1				GO:0009570 - chloroplast stroma, GO:0008289 - lipid binding, GO:0010236 - plastoquinone biosynthetic process		
21788	_	OsSTRL1, STRL1	_	STR-like 1			1	LOC_Os01g50330.	 Biochemical character	Os01g0698200	LOC_Os01g50330.1				GO:0016020 - membrane, GO:0016844 - strictosidine synthase activity, GO:0009058 - biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0016788 - hydrolase activity, acting on ester bonds		
21789	STRL2	OsSTRL2, OsSSL1, SSL1	STRICTOSIDINE SYNTHASE-LIKE 2	STR-like 2, strictosidine synthase-like 2, Strictosidine Synthase-like 1	STRICTOSIDINE SYNTHASE-LIKE 2		3	wheat orthologues of OsSTRL2 (encoded by TraesCS4B02G215300, TraesCS4D02G215800 and TraesCS4A02G089000).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os03g0263600	LOC_Os03g15710.1				GO:0010584 - pollen exine formation, GO:0048653 - anther development, GO:0016844 - strictosidine synthase activity, GO:0009408 - response to heat, GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0010208 - pollen wall assembly, GO:0009058 - biosynthetic process	TO:0000259 - heat tolerance, TO:0000437 - male sterility	PO:0001004 - anther development stage 
21790	STRL3	OsSTRL3, OsSSL2, SSL2	STRICTOSIDINE SYNTHASE-LIKE 3	STR-like 3, Strictosidine Synthase-like 2	STRICTOSIDINE SYNTHASE-LIKE 3		3		 Biochemical character	Os03g0750700	LOC_Os03g53950.1				GO:0005783 - endoplasmic reticulum, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016844 - strictosidine synthase activity, GO:0016020 - membrane, GO:0009058 - biosynthetic process		
21791	_	OsSTRL4, STRL4	_	STR-like 4			6	LOC_Os06g35950.	 Biochemical character		LOC_Os06g35950						
21792	STRL5	OsSTRL5, OsSSL3, SSL3	STRICTOSIDINE SYNTHASE-LIKE 5	STR-like 5, Strictosidine Synthase-like 3	STRICTOSIDINE SYNTHASE-LIKE 5		6		 Biochemical character		LOC_Os06g41820.1				GO:0009058 - biosynthetic process, GO:0005773 - vacuole, GO:0016844 - strictosidine synthase activity		
21793	_	OsSTRL6, STRL6	_	STR-like 6			6	LOC_Os06g41830.	 Biochemical character		LOC_Os06g41830						
21794	STRL8	OsSTRL8, OsSSL5, SSL5	STRICTOSIDINE SYNTHASE-LIKE 8	STR-like 8, Strictosidine Synthase-like 5	STRICTOSIDINE SYNTHASE-LIKE 8		7		 Biochemical character	Os07g0543600	LOC_Os07g35970.1				GO:0016020 - membrane, GO:0009058 - biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0016844 - strictosidine synthase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
21795	STRL12	OsSTRL12, OsSSL8, SSL8	STRICTOSIDINE SYNTHASE-LIKE 12	STR-like 12, Strictosidine Synthase-like 8	STRICTOSIDINE SYNTHASE-LIKE 12		7		 Biochemical character	Os07g0614000	LOC_Os07g42250.1				GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0016844 - strictosidine synthase activity, GO:0009058 - biosynthetic process, GO:0016788 - hydrolase activity, acting on ester bonds		
21796	STRL13	OsSTRL13, OsSSL9, SSL9	STRICTOSIDINE SYNTHASE-LIKE 13	STR-like 13, Strictosidine Synthase-like 9	STRICTOSIDINE SYNTHASE-LIKE 13		8		 Biochemical character	Os08g0175000	LOC_Os08g07810.1				GO:0009058 - biosynthetic process, GO:0016844 - strictosidine synthase activity, GO:0005783 - endoplasmic reticulum, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016020 - membrane		
21797	STRL14	OsSTRL14, OsSSL10, SSL10	STRICTOSIDINE SYNTHASE-LIKE 14	STR-like 14, Strictosidine Synthase-like 10	STRICTOSIDINE SYNTHASE-LIKE 14		8		 Biochemical character	Os08g0442200	LOC_Os08g34330.1				GO:0016020 - membrane, GO:0009058 - biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0016844 - strictosidine synthase activity, GO:0016788 - hydrolase activity, acting on ester bonds		
21798	STRL18	OsSTRL18, OsSSL13, SSL13	STRICTOSIDINE SYNTHASE-LIKE 18	STR-like 18, Strictosidine Synthase-like 13	STRICTOSIDINE SYNTHASE-LIKE 18		9		 Biochemical character	Os09g0374900	LOC_Os09g20810.1				GO:0009058 - biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016020 - membrane, GO:0016844 - strictosidine synthase activity		
21799	STRL19	OsSTRL19, OsSSL14, SSL14	STRICTOSIDINE SYNTHASE-LIKE 19	STR-like 19, Strictosidine Synthase-like 14	STRICTOSIDINE SYNTHASE-LIKE 19		10		 Biochemical character	Os10g0543500	LOC_Os10g39710.1, LOC_Os10g39710.2				GO:0009058 - biosynthetic process, GO:0016788 - hydrolase activity, acting on ester bonds, GO:0016844 - strictosidine synthase activity, GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane		
21800	STRL20	OsSTRL20, OsSSL15, SSL15	STRICTOSIDINE SYNTHASE-LIKE 20	STR-like 20, Strictosidine Synthase-like 15	STRICTOSIDINE SYNTHASE-LIKE 20		11		 Biochemical character	Os11g0142400	LOC_Os11g04660.1				GO:0016844 - strictosidine synthase activity, GO:0005783 - endoplasmic reticulum, GO:0009058 - biosynthetic process, GO:0016020 - membrane, GO:0016788 - hydrolase activity, acting on ester bonds		
21801	STRL21	OsSTRL21, OsSSL16, SSL16	STRICTOSIDINE SYNTHASE-LIKE 21	STR-like 21, Strictosidine Synthase-like 16	STRICTOSIDINE SYNTHASE-LIKE 21		12	targeted by OS_AGO1_sRNA304 (Qin et al. 2017).	 Biochemical character	Os12g0138800	LOC_Os12g04424.1, LOC_Os12g04424.2				GO:0009058 - biosynthetic process, GO:0016844 - strictosidine synthase activity, GO:0016021 - integral to membrane		
21802	_	OsSTRL9, STRL9	_	STR-like 9			7	LOC_Os07g35990.	 Biochemical character		LOC_Os07g35990						
21803	STRL10	OsSTRL10, OsSSL6, SSL6	STRICTOSIDINE SYNTHASE-LIKE 10	STR-like 10, Strictosidine Synthase-like 6	STRICTOSIDINE SYNTHASE-LIKE 10		7		 Biochemical character		LOC_Os07g36040.1				GO:0016844 - strictosidine synthase activity, GO:0005773 - vacuole, GO:0009058 - biosynthetic process		
21804	_	OsSTRL11, STRL11	_	STR-like 11			7	LOC_Os07g36060.	 Biochemical character		LOC_Os07g36060						
21805	STRL15	OsSTRL15, OsSSL11, SSL11	STRICTOSIDINE SYNTHASE-LIKE 15	STR-like 15, Strictosidine Synthase-like 11	STRICTOSIDINE SYNTHASE-LIKE 15		9		 Biochemical character		LOC_Os09g20684.1				GO:0009058 - biosynthetic process, GO:0005773 - vacuole, GO:0016844 - strictosidine synthase activity		
21806	_	OsSTRL16, STRL16	_	STR-like 16			9	LOC_Os09g20700.	 Biochemical character		LOC_Os09g20700						
21807	_	OsSTRL17, STRL17	_	STR-like 17			9	LOC_Os09g20720.	 Biochemical character		LOC_Os09g20720						
21808	NFYC13	OsNF-YC13, NF-YC13	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-13	Nuclear transcription factor Y subunit C-13, NUCLEAR FACTOR-Y subunit C13, NUCLEAR FACTOR-Y subunit NF-YC13, NF-Y subfamily C member 13	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-13		1	LOC_Os01g08790.	 Other,  Tolerance and resistance - Stress tolerance	Os01g0183400	LOC_Os01g08790.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0046982 - protein heterodimerization activity	TO:0006001 - salt tolerance	
21809	GLYR2	OsGLYR2, OsGR2, GR2	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 2	glyoxylate/succinic semialdehyde reductase 2, glyoxylate reductase 2	GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 2		1		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os01g0574600	LOC_Os01g39270.1				GO:0030267 - glyoxylate reductase (NADP) activity, GO:0009570 - chloroplast stroma, GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity, GO:0010037 - response to carbon dioxide, GO:0009648 - photoperiodism, GO:0046487 - glyoxylate metabolic process, GO:0070402 - NADPH binding, GO:0009536 - plastid, GO:0005739 - mitochondrion, GO:0051287 - NAD or NADH binding	TO:0000229 - photoperiod sensitivity, TO:0000207 - plant height	
21810	NOPE1 		NO PERCEPTION 1 	no perception 1		Osnope1	4	LOC_Os04g01520.	 Biochemical character	Os04g0105400	LOC_Os04g01520.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0055085 - transmembrane transport, GO:0015764 - N-acetylglucosamine transport, GO:0005886 - plasma membrane		
21811	_	OsEXTL, EXTL	_	OsExtensin-like gene, Extensin-like gene			10	LOC_Os10g22590. TO:0000993: cellulose content.	 Vegetative organ - Culm	Os10g0371000	LOC_Os10g22590.1				GO:0045488 - pectin metabolic process, GO:0030243 - cellulose metabolic process, GO:0009664 - plant-type cell wall organization, GO:0051510 - regulation of unidimensional cell growth, GO:0052386 - cell wall thickening	TO:0000068 - lodging incidence, TO:0000207 - plant height, TO:0000051 - stem strength	
21812	CCR18	OsCCR, CCR, OsCCR18	CINNAMOYL-COA REDUCTASE 18	Cinnamoyl-CoA reductase, Cinnamoyl-CoA reductase 18	CINNAMOYL-COA REDUCTASE 18		8		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0277200 	LOC_Os08g17500.1				GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity, GO:0050832 - defense response to fungus, GO:0050662 - coenzyme binding	TO:0000460 - light intensity sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
21813	UGT98B1	OsUGT98B1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B1	UDP-glucose-dependent glycosyltransferase 98B1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B1		1	LOC_Os01g08090.	 Biochemical character	Os01g0176000	LOC_Os01g08090.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
21814	UGT99B3	OsUGT98B3	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B3	UDP-glucose-dependent glycosyltransferase 98B3	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B3		10	LOC_Os10g09990.	 Biochemical character	Os10g0178500	LOC_Os10g09990.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity	TO:0002649 - pesticide sensitivity	
21815	UGT701A1	OsUGT701A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 701A1	UDP-glucose-dependent glycosyltransferase 701A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 701A1		4	LOC_Os04g44250.	 Biochemical character		LOC_Os04g44250				GO:0019748 - secondary metabolic process, GO:0016740 - transferase activity		
21816	UGT703A1	OsUGT703A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A1	UDP-glucose-dependent glycosyltransferase 703A1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A1		1	LOC_Os01g45140.	 Biochemical character	Os01g0638600	LOC_Os01g45140.1				GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
21817	UGT72J2	OsUGT72J2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72J2	UDP-glucose-dependent glycosyltransferase 72J2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72J2		1	LOC_Os01g43270.	 Biochemical character		LOC_Os01g43270						
21818	UGT710C2	OsUGT710C2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 710C2	UDP-glucose-dependent glycosyltransferase 710C2	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 710C2		7	LOC_Os07g13770.	 Biochemical character	Os07g0241500	LOC_Os07g13770.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
21819	UGT87C1	OsUGT87C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 87C1	UDP-glucose-dependent glycosyltransferase 87C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 87C1		1	LOC_Os01g59110.	 Biochemical character	Os01g0805500	LOC_Os01g59110.1				GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
21820	UGT74H4	OsUGT74H4, SGT1, OsSGT1, UGT74H12, OsUGT74H12	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 74H4	UDP-glucose-dependent glycosyltransferase 74H4, SA glucosyltransferase1, SA glucosyltransferase 1, salicylic acid glucosyltransferase 1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 74H4		9	UGT74H12 in Tezuka et al. 2021.	 Biochemical character	Os09g0518000	LOC_Os09g34230.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		PO:0009072 - plant ovary , PO:0009038 - palea , PO:0009082 - spikelet floret , PO:0009037 - lemma , PO:0009005 - root 
21821	UGT75E1	OsUGT75E1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75E1	UDP-glucose-dependent glycosyltransferase 75E1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75E1		11	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os11g0145200	LOC_Os11g04860.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0044272 - sulfur compound biosynthetic process		
21822	UGT75K1	OsUGT75K1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75K1	UDP-glucose-dependent glycosyltransferase 75K1, chloroplastic  crocetin glucosyltransferase	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75K1		1		 Coloration - Anthocyanin,  Biochemical character	Os01g0179600	LOC_Os01g08440.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0009813 - flavonoid biosynthetic process, GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
21823	UGT84C1	OsUGT84C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84C1	UDP-glucose-dependent glycosyltransferase 84C1, cinnamate beta-D-glucosyltransferase	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84C1		2		 Coloration - Anthocyanin,  Biochemical character	Os02g0188000	LOC_Os02g09510.1				GO:0008152 - metabolic process, GO:0009813 - flavonoid biosynthetic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
21824	EDR1	OsUGT84D1, UGT84D1, OsEDR1	ENDOSPERM DEVELOPMENT IN RICE 1	UDP-glucose-dependent glycosyltransferase 84D1, Endosperm Development in Rice 1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84D1	EDR1 -YZN, EDR1-YD1	5	the most likely candidate gene for the qEDR5.1 locus. TO:0000975: grain width. 	 Biochemical character,  Character as QTL - Germination,  Seed - Morphological traits - Grain shape,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances	Os05g0552700	LOC_Os05g47950.1				GO:0048316 - seed development, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0030259 - lipid glycosylation, GO:0006486 - protein amino acid glycosylation, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009845 - seed germination, GO:0010431 - seed maturation, GO:0009960 - endosperm development	TO:0000397 - grain size, TO:0000266 - chalky endosperm, TO:0000162 - seed quality, TO:0000382 - 1000-seed weight, TO:0000399 - grain thickness, TO:0000734 - grain length, TO:0002661 - seed maturation, TO:0000653 - seed development trait, TO:0000598 - protein content	PO:0020033 - coleoptile , PO:0007057 - 0 seed germination stage , PO:0020031 - radicle , PO:0007633 - endosperm development stage , PO:0009010 - seed , PO:0001170 - seed development stage , PO:0007632 - seed maturation stage 
21825	CYP71AA2	OsCYP71AA2	CYTOCHROME P450 71AA2	Cytochrome P450 71AA2	CYTOCHROME P450 71AA2		1	BGIOSGA005210.	 Biochemical character	Os01g0957800	LOC_Os01g72760.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
21826	CYP71AA3	OsCYP71AA3, OsCYP71AA1, CYP71AA1	CYTOCHROME P450 71AA3	Cytochrome P450 71AA3	CYTOCHROME P450 71AA3		1	BGIOSGA005209. OsCYP71AA1 in Sahoo et al. 2023. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os01g0957600	LOC_Os01g72740.1				GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
21827	CYP71AK1	OsCYP71AK1, OsCYP71T11, CYP71T11	CYTOCHROME P450 71AK1	Cytochrome P450 71AK1	CYTOCHROME P450 71AK1		9	BGIOSGA031134. OsCYP71T11 in Sahoo et al. 2023.	 Biochemical character	Os09g0530275	LOC_Os09g36070.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
21828	CYP71E5	OsCYP71E5, OsCYP71E1, CYP71E1	CYTOCHROME P450 71E5	Cytochrome P450 71E5	CYTOCHROME P450 71E5		12	BGIOSGA036106. OsCYP71E1 in Sahoo et al. 2023.	 Biochemical character	Os12g0512800	LOC_Os12g32850.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
21829	CYP71K7	OsCYP71K7	CYTOCHROME P450 71K7	Cytochrome P450 71K7	CYTOCHROME P450 71K7		6	LOC_Os06g43480.	 Biochemical character	Os06g0642200	LOC_Os06g43480.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
21830	CYP71K9	OsCYP71K9, T5H	CYTOCHROME P450 71K9	Cytochrome P450 71K9, tryptamine 5-hydroxylase	CYTOCHROME P450 71K9		6	GO:0044550: secondary metabolite biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0641800	LOC_Os06g43430.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane, GO:0009409 - response to cold, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0030186 - melatonin metabolic process, GO:0007623 - circadian rhythm	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
21831	CYP71X14	OsCYP71X14	CYTOCHROME P450 71X14	Cytochrome P450 71X14	CYTOCHROME P450 71X14		2	LOC_Os02g38940.	 Biochemical character	Os02g0601500	LOC_Os02g38940.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane, GO:0020037 - heme binding		
21832	CYP71Y5	OsCYP71Y5, OsCYP71K5, CYP71K5	CYTOCHROME P450 71Y5	Cytochrome P450 71Y5	CYTOCHROME P450 71Y5		6	BGIOSGA023340. OsCYP71K5 in Sahoo et al. 2023.	 Biochemical character		LOC_Os06g43350.1						
21833	CYP71Y7	OsCYP71Y7	CYTOCHROME P450 71Y7	Cytochrome P450 71Y7	CYTOCHROME P450 71Y7		6	GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os06g0639800	LOC_Os06g43304.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0020037 - heme binding		PO:0020104 - leaf sheath 
21834	CYP76M7	OsCYP76M7	CYTOCHROME P450 76M7	Cytochrome P450 76M7	CYTOCHROME P450 76M7		9	GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os09g0528700	LOC_Os09g35940.1				GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
21835	CYP78C6	OsCYP78C6	CYTOCHROME P450 78C6	Cytochrome P450 78C6	CYTOCHROME P450 78C6		9	LOC_Os09g35940. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os09g0528700	LOC_Os09g35940.1				GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0016020 - membrane		
21836	CYP81A5	OsCYP81A5, OsCYP71U7, CYP71U7	CYTOCHROME P450 81A5	Cytochrome P450 81A5	CYTOCHROME P450 81A5		3	BGIOSGA013602. OsCYP71U7 in Sahoo et al. 2023.	 Biochemical character	Os03g0760000	LOC_Os03g55230.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane		
21838	CYP89B4	OsCYP89B4	CYTOCHROME P450 89B4	Cytochrome P450 89B4	CYTOCHROME P450 89B4		10	LOC_Os10g37100. GO:0044550: secondary metabolite biosynthetic process.	 Biochemical character	Os10g0514901	LOC_Os10g37100.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0042343 - indole glucosinolate metabolic process, GO:0005506 - iron ion binding, GO:0016020 - membrane		
21839	CYP72A17	OsCYP72A17	CYTOCHROME P450 72A17	Cytochrome P450 72A17	CYTOCHROME P450 72A17		1	LOC_Os01g43700.	 Biochemical character	Os01g0627400	LOC_Os01g43700.1, LOC_Os01g43700.2				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
21840	CYP72A18	OsCYP72A18	CYTOCHROME P450 72A18	Cytochrome P450 72A18	CYTOCHROME P450 72A18		1		 Vegetative organ - Leaf,  Coloration - Others,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0627500	LOC_Os01g43710.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0016117 - carotenoid biosynthetic process, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding	TO:0000326 - leaf color	
21841	CYP72A19	OsCYP72A19	CYTOCHROME P450 72A19	Cytochrome P450 72A19	CYTOCHROME P450 72A19		1	LOC_Os01g43720.	 Biochemical character	Os01g0627600	LOC_Os01g43720.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
21842	CYP709C5	OsCYP709C5	CYTOCHROME P450 709C5	Cytochrome P450 709C5	CYTOCHROME P450 709C5		7	a gene in rice zygotes with paternal allele-dependent expression.	 Biochemical character	Os07g0635500	LOC_Os07g44140.1				GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
21843	CYP709C11	OsCYP709C11	CYTOCHROME P450 709C11	Cytochrome P450 709C11	CYTOCHROME P450 709C11		6	LOC_Os06g09220.	 Biochemical character	Os06g0191800	LOC_Os06g09220.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
21844	CYP87C2	OsCYP87C2	CYTOCHROME P450 87C2	Cytochrome P450 87C2	CYTOCHROME P450 87C2		3	LOC_Os03g45619.	 Biochemical character	Os03g0658800	LOC_Os03g45619.1, LOC_Os03g45619.2				GO:0016125 - sterol metabolic process, GO:0010268 - brassinosteroid homeostasis, GO:0016132 - brassinosteroid biosynthetic process, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0007275 - multicellular organismal development		
21845	CYP94C2	OsCYP94C2, CYP94C2a, OsCYP94C2a	CYTOCHROME P450 94C2	Cytochrome P450 94C2	CYTOCHROME P450 94C2		11	CYP94C2a in Hazman et al. 2019.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0151400	LOC_Os11g05380.1				GO:0009611 - response to wounding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0009694 - jasmonic acid metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21846	CYP704A5	OsCYP704A5	CYTOCHROME P450 704A5	Cytochrome P450 704A5	CYTOCHROME P450 704A5		10	LOC_Os10g38110.	 Biochemical character,  Reproductive organ - panicle	Os10g0525000	LOC_Os10g38110.1, LOC_Os10g38110.2				GO:0005506 - iron ion binding, GO:0010229 - inflorescence development, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane, GO:0020037 - heme binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21847	_	OsGSTU3	_	glutathione transferase U3			10	LOC_Os10g38501. (Obsolete locus in MSU Rice Genome Annotation Project Release 7 data)									
21848	_	OsGSTU4	_	glutathione transferase U4			10	LOC_Os10g38495. (Obsolete locus in MSU Rice Genome Annotation Project Release 7 data)									
21849	_	HAL1	_	half-pipe-like leaf1, half-pipe-like leaf 1		hal1, hal1-d		TO:1000024: palea morphology trait.	 Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape							TO:0002681 - leaf curling, TO:0000575 - endosperm related trait, TO:0000149 - seed width, TO:0000614 - lemma shape, TO:0000564 - spikelet width, TO:0002637 - leaf size	PO:0004001 - bulliform cell 
21850	WTG1	OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1	WIDE AND THICK GRAIN 1	new plant type 1, OTU domain-containing ubiquitin aldehyde-binding protein 1, wide and thick grain 1, otubain 1		npt1, wtg1-1	8	a human OTUB1-like deubiquitinase. an otubain-like protease with deubiquitination activity. PO:0030123: panicle inflorescence. TO:0000975: grain width. 	 Biochemical character,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os08g0537800	LOC_Os08g42540.1, LOC_Os08g42540.2				GO:0071108 - protein K48-linked deubiquitination, GO:0019784 - NEDD8-specific protease activity, GO:0005634 - nucleus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0070536 - protein K63-linked deubiquitination, GO:0050832 - defense response to fungus, GO:0004843 - ubiquitin-specific protease activity, GO:0042127 - regulation of cell proliferation, GO:0043130 - ubiquitin binding	TO:0000382 - 1000-seed weight, TO:0000590 - grain weight, TO:0000074 - blast disease, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000051 - stem strength, TO:0006032 - panicle size, TO:0002759 - grain number, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0002730 - grain shape, TO:0000397 - grain size, TO:0000447 - filled grain number	PO:0009015 - portion of vascular tissue , PO:0009010 - seed , PO:0020123 - root cap , PO:0020149 - quiescent center , PO:0006079 - shoot meristem , PO:0009066 - anther , PO:0009049 - inflorescence 
21851	BPH31	Bph31	BROWN PLANTHOPPER RESISTANCE 31	BPH resistance 31			3	The BPH31 gene was located on the long arm of chromosome 3 between the markers PA26 and RM2334. The BPH31 locus (475 kb region) contained minimum of 42 candidate genes. Among these, three genes (LOC_Os03g46440, LOC_Os03g46454, and LOC_Os03g46550) might be associated with biotic stress stimulus (Prahalada et al. 2017).	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect, GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
21852	EXPL1	OsEXPLA1, EXPLA1, OsRIP3, RIP3, Os-EXPL1, OsEXPL1	EXPANSIN-LIKE 1	expansion-like A1, REL1-interacting protein 3, expansin-like 1	EXPANSIN-LIKE 1	rip3	3	Q10S70. AY100693, AY039022. TO:0006064: rolled leaf.	 Vegetative organ - Culm,  Vegetative organ - Leaf	Os03g0132200	LOC_Os03g04020.1, LOC_Os03g04020.2				GO:0005576 - extracellular region, GO:0050793 - regulation of developmental process	TO:0000207 - plant height, TO:0000206 - leaf angle	
21853	_	OsJIP-1, JIP-1, OsJIP1, JIP1	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21854	_	OsJIP-2, JIP-2, OsJIP2, JIP2	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21855	_	OsJIP-3, JIP-3, OsJIP3, JIP3	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21856	_	OsJIP-4, JIP-4, OsJIP4, JIP4	_												GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity	
21857	_	OsJMT, JMT	_												GO:0009695 - jasmonic acid biosynthetic process		
21858	_	EXPA23, OsEXPA23	_	ALPHA-EXPANSIN 23, Expansin-A23, Alpha-expansin-23			2	LOC_Os02g16809. Q4PR43.		Os02g0268400	LOC_Os02g16809.1				GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane		
21859	PSE1	OsPSE1, OsPLL1, PLL1	PREMATURE SENESCENCE 1	premature senescence 1, premature senescence1, Pectate lyase-like 1		Ospse1	1	LOC_Os01g36620. PO:0030123: panicle inflorescence.	 Biochemical character,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os01g0546800	LOC_Os01g36620.1				GO:0030570 - pectate lyase activity, GO:0009845 - seed germination, GO:0045490 - pectin catabolic process, GO:0046872 - metal ion binding	TO:0000592 - 1000-dehulled grain weight, TO:0001018 - transpiration rate, TO:0000207 - plant height, TO:0000180 - spikelet fertility, TO:0000495 - chlorophyll content, TO:0000397 - grain size, TO:0000326 - leaf color, TO:0001027 - net photosynthetic rate	PO:0007057 - 0 seed germination stage , PO:0009073 - stigma 
21860	_		_	NAD dependent epimerase/dehydratase family protein			3	LOC_Os03g23980. XB21 interacting protein (XB21IP).		Os03g0355900	LOC_Os03g23980.1						
21861	_		_	Glutaminyl-tRNA synthetase			1	LOC_Os01g09000. XB21 interacting protein (XB21IP).		Os01g0185200	LOC_Os01g09000.1				GO:0005737 - cytoplasm, GO:0006425 - glutaminyl-tRNA aminoacylation, GO:0004819 - glutamine-tRNA ligase activity, GO:0016874 - ligase activity, GO:0005524 - ATP binding		
21862	_		_	Beta-D-glucan exohydrolase-like protein			5	LOC_Os05g37700. XB21 interacting protein (XB21IP).		Os05g0449600	LOC_Os05g37700.1, LOC_Os05g37700.2				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0008422 - beta-glucosidase activity, GO:0009251 - glucan catabolic process		
21863	_		_	FHA domain containing protein			11	LOC_Os11g03390. XB21 interacting protein (XB21IP).		Os11g0127800	LOC_Os11g03390.1, LOC_Os11g03390.2				GO:0003729 - mRNA binding, GO:0005634 - nucleus		
21864	_		_	peptidyl-tRNA hydrolase			1	LOC_Os01g49900. Q5N9Q7. XB21 interacting protein (XB21IP).	 Biochemical character	Os01g0693900	LOC_Os01g49900.1				GO:0004045 - aminoacyl-tRNA hydrolase activity, GO:0005739 - mitochondrion		
21865	USP30	OsUSP, USP, OsUSP30, OsUSP4, USP4	UNIVERSAL STRESS PROTEIN 30	universal stress protein domain containing protein	UNIVERSAL STRESS PROTEIN 30		7	Q5N9Q7. XB21 interacting protein (XB21IP). OsUSP4 in Liang et al. 2022.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0551400	LOC_Os07g36600.3, LOC_Os07g36600.2, LOC_Os07g36600.1				GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0000074 - blast disease	PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009005 - root 
21866	_		_	transmembrane protein 56			3	LOC_Os03g46410. Q5N9Q7. XB21 interacting protein (XB21IP).		Os03g0666700	LOC_Os03g46410.1				GO:0016021 - integral to membrane		
21867	_		_	ABC1 family domain containing protein			7	LOC_Os07g12530. Q5N9Q7. XB21 interacting protein (XB21IP).		Os07g0227800	LOC_Os07g12530.1, LOC_Os07g12530.2				GO:0010287 - plastoglobule		
21868	_	AtpB	_	ATP synthase subunit beta			10	LOC_Os10g21266.	 Biochemical character	Os10g0355800	LOC_Os10g21264.1, LOC_Os10g21266.1				GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0015986 - ATP synthesis coupled proton transport, GO:0005524 - ATP binding		
21869	_	RPL5	_	ribosomal protein L5, 50 S ribosomal gene RPL5			1	LOC_Os01g17150. GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis.	 Other	Os01g0278900	LOC_Os01g17150.1				GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0032544 - plastid translation, GO:0005840 - ribosome		
21870	_		_	ATPase			3	LOC_Os03g58800.		Os03g0802600	LOC_Os03g58800.1				GO:0005524 - ATP binding		
21871	_	MSH7	_	MutS homolog 7				an MSH6-like protein unique to plants. a plant-specific MutS protein.									
21872	_	OsAMI2, AMI2, OsAMI1, AMI1	_	amidase 2			4	LOC_Os04g02754. OsAMI1 in Wang et al. 2017. 	 Biochemical character	Os04g0117900	LOC_Os04g02754.1				GO:0009737 - response to abscisic acid stimulus, GO:0004040 - amidase activity	TO:0000615 - abscisic acid sensitivity	
21873	_	OsAMI1, AMI1	_	AMI1-like protein, Amidase 1			4	LOC_Os04g02780. Q7XTK3.	 Biochemical character	Os04g0118100	LOC_Os04g02780.1				GO:0004040 - amidase activity		
21874	SEU2	OsSEU2	SEUSS 2	OsSEUSS 2			11	a rice homolog of Arabidopsis thaliana SEU (SEUSS).	 Reproductive organ - Spikelet, flower, glume, awn	Os11g0207100	LOC_Os11g10070.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
21875	SEU3	OsSEU3, OsSLK, SLK	SEUSS 3	OsSEUSS 3, SEUSS-LIKE		osslk#1, osslk#2, osslk#3, osslk#4	11	a rice homolog of Arabidopsis thaliana SEU (SEUSS).	 Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0126000	LOC_Os06g03600.3, LOC_Os06g03600.2, LOC_Os06g03600.1				GO:0080022 - primary root development, GO:0005634 - nucleus, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000227 - root length, TO:0000656 - root development trait	PO:0001083 - inflorescence development stage , PO:0007520 - root development stage 
21876	GCD1	OsGCD1	GAMETE CELLS DEFECTIVE 1	GAMETE CELLS DEFECTIVE1		Osgcd1, osgcd1	1	homolog of Arabidopsis GCD1.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0801700 	LOC_Os01g58750.1				GO:0010152 - pollen maturation, GO:0007097 - nuclear migration, GO:0009960 - endosperm development, GO:0009953 - dorsal/ventral pattern formation, GO:0009846 - pollen germination, GO:0009555 - pollen development	TO:0000437 - male sterility, TO:0000420 - fertility related trait, TO:0000696 - starch content	PO:0001007 - pollen development stage , PO:0007633 - endosperm development stage 
21877	_	OsLIL3, LIL3	_	light-harvesting-like protein 3			2	rice ortholog of Arabidopsis LIL3.	 Tolerance and resistance - Stress tolerance,  Coloration - Others,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os02g0125700	LOC_Os02g03330.1				GO:0009642 - response to light intensity, GO:0009535 - chloroplast thylakoid membrane, GO:0015995 - chlorophyll biosynthetic process, GO:0009658 - chloroplast organization, GO:0055085 - transmembrane transport, GO:0009507 - chloroplast, GO:0022891 - substrate-specific transmembrane transporter activity	TO:0000456 - spikelet number, TO:0000460 - light intensity sensitivity, TO:0000152 - panicle number, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000326 - leaf color	
21878	SKOR 	OsSKOR, OsK5.1, K5.1	STELAR K+ OUTWARD RECTIFIER	stelar K+ outward rectifier, Stelar K(+) outward facing channel	STELAR K+ OUTWARD RECTIFIER		4	outward Shaker K+ channel. Q7XUW4.	 Biochemical character	Os04g0445000	LOC_Os04g36740.1, LOC_Os04g36740.2				GO:0005249 - voltage-gated potassium channel activity, GO:0005887 - integral to plasma membrane, GO:0042391 - regulation of membrane potential		PO:0020110 - scutellum , PO:0009046 - flower , PO:0003011 - root vascular system 
21879	GORK 	OsGORK, OsK5.2, K5.2, KOR1, OsKOR1, OsSKOR, SKOR	GUARD CELL OUTWARD RECTIFYING K+ CHANNEL	guard cell outward rectifying K+ channel, shaker potassium channel SKOR	GUARD CELL OUTWARD RECTIFYING K+ CHANNEL	osk5.2	6	outward Shaker K+ channel. Q653P0. GO:0090333: regulation of stomatal closure.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0250600 	LOC_Os06g14030.1				GO:0005887 - integral to plasma membrane, GO:0009651 - response to salt stress, GO:0005249 - voltage-gated potassium channel activity, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0010232 - vascular transport, GO:0010118 - stomatal movement, GO:0042391 - regulation of membrane potential	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0001017 - water use efficiency	PO:0009005 - root , PO:0002000 - stomatal complex , PO:0009046 - flower , PO:0000258 - root cortex , PO:0003011 - root vascular system , PO:0000284 - subsidiary cell , PO:0025181 - root elongation zone , PO:0000293 - guard cell 
21880	HAD1	OsHAD1	HALOACID DEHALOGENASE 1	haloacid dehalogenase 1	HALOACID DEHALOGENASE 1		3	LOC_Os03g61829.  a Haloacid Dehalogenase-Like APase. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0834050	LOC_Os03g61829.1				GO:0003993 - acid phosphatase activity, GO:0005829 - cytosol, GO:0042594 - response to starvation, GO:0016787 - hydrolase activity, GO:0008152 - metabolic process, GO:0016020 - membrane		
21881	GNK2RLK8	Gnk2RLK-8, OsGnk2RLK-8	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 8	receptor-like kinase, GnK2 domain containing receptor-like kinase-8	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 8		10	an interactive partner of OsHAD.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0136500	LOC_Os10g04730.1				GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009010 - seed , PO:0009006 - shoot system , PO:0025034 - leaf 
21882	S40		HYBRID STERILITY 40	Hybrid sterility40, Hybrid sterility 40, Hybrid sterility-40		S40i, S40l	1	The S40 locus was delimited to an 80-kb region on the short arm of chromosome 1. ORF5 (LOC_Os01g16730, a ulp1 protein) and ORF8 (LOC_Os01g16810, a R2R3 MYB family transcription factor) were identified as candidate genes for the S40 locus.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0007275 - multicellular organismal development	TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000358 - female sterility	
21883	_		_	ulp1 protein			1	LOC_Os01g16730. Ulp1 protease family. One of the candidate genes for the hybrid sterility gene S40 locus (Chen et al. 2017).	 Biochemical character	Os01g0273900	LOC_Os01g16730.1				GO:0008234 - cysteine-type peptidase activity		
21884	NTP1	OsNTP1	NUCLEOTIDYL TRANSFERASE PROTEIN 1	nucleotidyl transferase protein 1	NUCLEOTIDYL TRANSFERASE PROTEIN 1		1	LOC_Os01g44350.1 	 Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Os01g44350				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21885	NTP2	OsNTP2	NUCLEOTIDYL TRANSFERASE PROTEIN 2	nucleotidyl transferase protein 2	NUCLEOTIDYL TRANSFERASE PROTEIN 2		1	LOC_Os01g48210.1 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0672700	LOC_Os01g48210.1, LOC_Os01g48210.2				GO:0070566 - adenylyltransferase activity, GO:0006364 - rRNA processing, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21886	NTP3	OsNTP3	NUCLEOTIDYL TRANSFERASE PROTEIN 3	nucleotidyl transferase protein 3	NUCLEOTIDYL TRANSFERASE PROTEIN 3		1	LOC_Os01g62790.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0846500	LOC_Os01g62790.1, LOC_Os01g62790.2				GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
21887	NTP4	OsNTP4	NUCLEOTIDYL TRANSFERASE PROTEIN 4	nucleotidyl transferase protein 4	NUCLEOTIDYL TRANSFERASE PROTEIN 4		2	LOC_Os02g02970.1	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0122100	LOC_Os02g02970.1				GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity	
21888	NTP5	OsNTP5	NUCLEOTIDYL TRANSFERASE PROTEIN 5	nucleotidyl transferase protein 5	NUCLEOTIDYL TRANSFERASE PROTEIN 5		3	LOC_Os03g11240.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0210800	LOC_Os03g11240.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0016779 - nucleotidyltransferase activity	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	
21889	NTP6	OsNTP6	NUCLEOTIDYL TRANSFERASE PROTEIN 6	nucleotidyl transferase protein 6	NUCLEOTIDYL TRANSFERASE PROTEIN 6		3	LOC_Os03g21850.1	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0336700	LOC_Os03g21850.1, LOC_Os03g21850.2				GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
21890	NTP7	OsNTP7	NUCLEOTIDYL TRANSFERASE PROTEIN 7	nucleotidyl transferase protein 7	NUCLEOTIDYL TRANSFERASE PROTEIN 7		6	LOC_Os06g45800.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0669275	LOC_Os06g45800.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21891	NTP8	OsNTP8	NUCLEOTIDYL TRANSFERASE PROTEIN 8	nucleotidyl transferase protein 8	NUCLEOTIDYL TRANSFERASE PROTEIN 8		7	LOC_Os07g48170.1	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0679400	LOC_Os07g48170.1				GO:0009408 - response to heat, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
21892	NTP9	OsNTP9	NUCLEOTIDYL TRANSFERASE PROTEIN 9	nucleotidyl transferase protein 9	NUCLEOTIDYL TRANSFERASE PROTEIN 9		8	LOC_Os08g44560.1	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0559900	LOC_Os08g44560.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
21893	NTP11	OsNTP11	NUCLEOTIDYL TRANSFERASE PROTEIN 11	nucleotidyl transferase protein 11	NUCLEOTIDYL TRANSFERASE PROTEIN 11		11	LOC_Os11g02320.2	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0114700	LOC_Os11g02320.1, LOC_Os11g02320.2, LOC_Os11g02320.3				GO:0009408 - response to heat, GO:0016740 - transferase activity	TO:0000259 - heat tolerance	
21894	NTP12	OsNTP12	NUCLEOTIDYL TRANSFERASE PROTEIN 12	nucleotidyl transferase protein 12	NUCLEOTIDYL TRANSFERASE PROTEIN 12		12	LOC_Os12g02260.1	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0114200	LOC_Os12g02260.1, LOC_Os12g02260.2				GO:0016740 - transferase activity, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
21895	NTP13	OsNTP13	NUCLEOTIDYL TRANSFERASE PROTEIN 13	nucleotidyl transferase protein 13	NUCLEOTIDYL TRANSFERASE PROTEIN 13		12	LOC_Os12g18530.1 PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0283100	LOC_Os12g18530.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016740 - transferase activity	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009049 - inflorescence 
21896	SRF3	OsSRF3	STRUBBELIG RECEPTOR KINASE 3		STRUBBELIG RECEPTOR KINASE 3	Ossrf3, srf3-1	2	targeted by OS_AGO1_sRNA843 (Qin et al. 2017). GO:1900150: regulation of defense response to fungus. GO:1900426: positive regulation of defense response to bacterium. GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0176100	LOC_Os02g07960.2, LOC_Os02g07960.3, LOC_Os02g07960.4				GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0007166 - cell surface receptor linked signal transduction, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0000165 - MAPKKK cascade, GO:0002679 - respiratory burst during defense response, GO:0052544 - callose deposition in cell wall during defense response, GO:0010200 - response to chitin, GO:0002238 - response to molecule of fungal origin	TO:0000605 - hydrogen peroxide content, TO:0000129 - false smut disease resistance, TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
21897	_	OsWee1, Wee1	_	wall-associated receptor-like protein kinase, cell cycle-associated protein kinase OsWee1			2	KX758541. targeted by OS_AGO1_sRNA288 (Qin et al. 2017). rice ortholog of fission yeast (S. pombe) Wee1.	 Biochemical character	Os02g0632100	LOC_Os02g42110.1				GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0005524 - ATP binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0000320 - re-entry into mitotic cell cycle, GO:0005886 - plasma membrane, GO:0051782 - negative regulation of cell division, GO:0016021 - integral to membrane		
21898	GINT2	OsGINT2	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 2	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE2	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 2		3	LOC_Os03g48010. targeted by osa-miR818 (Qin et al. 2017).	 Biochemical character	Os03g0684500	LOC_Os03g48010.1				GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0006486 - protein amino acid glycosylation, GO:0009737 - response to abscisic acid stimulus, GO:0030259 - lipid glycosylation, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009845 - seed germination		
21899	_		_				4	LOC_Os04g02620. targeted by OS_AGO1_sRNA296 (Qin et al. 2017).		Os04g0116600	LOC_Os04g02620.1				GO:0016021 - integral to membrane		
21900	MAK5	OsMAK5	MEMBRANE-ASSOCIATED KINASE-5	protein kinase, Membrane-associated kinase-5	MEMBRANE-ASSOCIATED KINASE-5		6	targeted by OS_AGO1_sRNA304 and OS_AGO1_sRNA495 (Qin et al. 2017).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0241100	LOC_Os06g13320.1				GO:0005524 - ATP binding, GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation	TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009046 - flower , PO:0009010 - seed 
21901	DRD1	OsDRD1, CHR736, OsCHR736	DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1	DRD1 protein, chromatin remodeling factor 736	CHROMATIN REMODELING FACTOR 736		7	targeted by OS_AGO1_sRNA672 (Qin et al. 2017). GO:0140658: ATP-dependent chromatin remodeler activity. GO:0080188: gene silencing by RNA-directed DNA methylation.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0434500	LOC_Os07g25390.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
21902	_		_				11	LOC_Os11g36160. targeted by osa-miR159 (Qin et al. 2017).	 Biochemical character	Os11g0569600	LOC_Os11g36160.1, LOC_Os11g36160.2				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
21903	_	SPL26, OsSPL26, OsSpl26	_	Spotted-leaf 26, SPOTTED LEAF 26		Osspl26	7	targeted by OS_AGO1_sRNA302, OS_AGO1_sRNA304 and OS_AGO1_sRNA495 (Qin et al. 2017). PO:0030123: panicle inflorescence. TO:0020106: Indole-3-acetic acid content.	 Tolerance and resistance - Lesion mimic,  Character as QTL - Plant growth activity,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0141200	LOC_Os07g04820				GO:0006952 - defense response, GO:0010939 - regulation of necrotic cell death, GO:0005886 - plasma membrane, GO:0009416 - response to light stimulus, GO:0010941 - regulation of cell death, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0031347 - regulation of defense response	TO:0002668 - jasmonic acid content, TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000075 - light sensitivity, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000316 - photosynthetic ability, TO:0001015 - photosynthetic rate, TO:0000522 - stomatal conductance, TO:0001018 - transpiration rate, TO:0002672 - auxin content, TO:0002667 - abscisic acid content, TO:0000357 - growth and development trait	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0009049 - inflorescence 
21904	_		_	Retinol dehydrogenase 14			6	targeted by osa-miR167 and OS_AGO1_sRNA193 (Qin et al. 2017).	 Tolerance and resistance - Disease resistance	Os06g0129100	LOC_Os06g03830.2, LOC_Os06g03830.1				GO:0050832 - defense response to fungus, GO:0016491 - oxidoreductase activity	TO:0000074 - blast disease	
21905	AKR4C15	OsAKR4C15, OsALR1, ALR1	ALDO-KETO REDUCTASE 4C15  	Aldo-Keto Reductase 4 subfamily C member 15, Aldo-Keto Reductase 4C15, aldose reductase 1	ALDO-KETO REDUCTASE 4C15  		5	KT004547. OsALR1 in Chen et al. 2023. one of six members of Group 4 Aldo-Keto Reductase.	 Biochemical character	Os05g0456300	LOC_Os05g38230.1, LOC_Os05g38230.2, LOC_Os05g38230.3				GO:0005829 - cytosol, GO:0004032 - aldehyde reductase activity, GO:0008106 - alcohol dehydrogenase (NADP+) activity, GO:0016491 - oxidoreductase activity		
21906	ARK4	OsARK4	ALDO/KETO REDUCTASE 4	Aldo-Keto Reductase, aldo/keto reductase 4	ALDO/KETO REDUCTASE 4		4	A2XRZ0 (indica). Q7XT99 (japonica).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0338000	LOC_Os04g26910.1				GO:0016491 - oxidoreductase activity, GO:0009408 - response to heat, GO:0005634 - nucleus	TO:0000259 - heat tolerance	
21907	CWZF3	OsCW-ZF3, CW-ZF3	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 3 	cysteine-tryptophan-domain containing zinc finger protein on chromosome 3, CW-domain containing zinc finger protein 3, CW-domain containing protein 3	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 3		3	LOC_Os03g22580. PO:0030123: panicle inflorescence.		Os03g0347300	LOC_Os03g22580.1, LOC_Os03g22580.2				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0035064 - methylated histone residue binding		
21908	CWZF5	OsCW-ZF5, CW-ZF5	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 5	cysteine-tryptophan-domain containing zinc finger protein on chromosome 5, CW-domain containing zinc finger protein 5, CW-domain containing protein 5	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 5		5	LOC_Os05g30790. PO:0030123: panicle inflorescence.		Os05g0371100	LOC_Os05g30790.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0035064 - methylated histone residue binding		
21909	WG7	OsCW-ZF7, CW-ZF7, CWZF7, OsWG7, AKIP695, OsAKIP695	WIDE GRAIN 7	cysteine-tryptophan-domain containing zinc finger protein on chromosome 7, CW-domain containing zinc finger protein 7, CW-domain containing protein 7, AvrPik-D interacting protein 695	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 7	Oscw-zf7, Oscw-zf7-2, wg7, wg7-4#, wg7-10#	7	PO:0030123: panicle inflorescence. TO:0000975: grain width. GO:1900150: regulation of defense response to fungus.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0669800	LOC_Os07g47360.3, LOC_Os07g47360.2, LOC_Os07g47360.1				GO:0009737 - response to abscisic acid stimulus, GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0031062 - positive regulation of histone methylation, GO:0035064 - methylated histone residue binding, GO:0008270 - zinc ion binding, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0002679 - respiratory burst during defense response, GO:0010200 - response to chitin, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0002667 - abscisic acid content, TO:0002672 - auxin content, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000072 - awn length, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content	
21910	CWZF6	OsCW-ZF6, CW-ZF6	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 6	cysteine-tryptophan-domain containing zinc finger protein on chromosome 6, CW-domain containing zinc finger protein 6, CW-domain containing protein 6	CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 6		6	LOC_Os06g41710. OsCW-ZF6 had a premature stop codon (Zhang et al. 2017). 		Os06g0622000	LOC_Os06g41710.1				GO:0008270 - zinc ion binding		
21911	PPR6	OsPPR6	PENTATRICOPEPTIDE REPEAT PROTEIN 6	pentatricopeptide repeat protein 6	PENTATRICOPEPTIDE REPEAT PROTEIN 6	osppr6	5	LOC_Os05g49920.1	 Biochemical character	Os05g0574800 	LOC_Os05g49920.1				GO:0010027 - thylakoid membrane organization, GO:0008380 - RNA splicing, GO:0009507 - chloroplast, GO:0043231 - intracellular membrane-bounded organelle, GO:0009416 - response to light stimulus, GO:0004519 - endonuclease activity, GO:0040007 - growth, GO:0009658 - chloroplast organization, GO:0009451 - RNA modification, GO:0008270 - zinc ion binding, GO:0003723 - RNA binding		
21913	_		_	UDP-glucose 6-dehydrogenase			12	LOC_Os12g25700. Q2QS13.	 Biochemical character	Os12g0443600	LOC_Os12g25700.1, LOC_Os12g25700.2, LOC_Os12g25700.3				GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0051287 - NAD or NADH binding, GO:0003979 - UDP-glucose 6-dehydrogenase activity, GO:0006024 - glycosaminoglycan biosynthetic process, GO:0006065 - UDP-glucuronate biosynthetic process		
21914	_		_	beta-hexosaminidase			5	LOC_Os05g02510. GO:0102148: N-acetyl-beta-D-galactosaminidase activity. GO:0005975: carbohydrate metabolic process.	 Biochemical character	Os05g0115900	LOC_Os05g02510.1				GO:0009505 - plant-type cell wall, GO:0005773 - vacuole, GO:0005829 - cytosol, GO:0004563 - beta-N-acetylhexosaminidase activity		
21915	PTR9	OsPTR9, OsNPF8.20, NPF8.20	PROTEIN TRANSPORTER 9	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.20	PROTEIN TRANSPORTER 9	osptr9, OsPTR9-1, OsPTR9-2, OsPTR9-3, OsPTR9-4	6	peptide transporter (PTR) gene family. GO:0071705: nitrogen compound transport. GO:1990573: potassium ion import across plasma membrane.	 Biochemical character,  Vegetative organ - Root,  Character as QTL - Yield and productivity	Os06g0706400	LOC_Os06g49250.5, LOC_Os06g49250.4, LOC_Os06g49250.3, LOC_Os06g49250.2, LOC_Os06g49250.1				GO:0005215 - transporter activity, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0009620 - response to fungus, GO:0009416 - response to light stimulus, GO:0060359 - response to ammonium ion, GO:0048527 - lateral root development	TO:0000075 - light sensitivity, TO:0000227 - root length, TO:0000656 - root development trait, TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000278 - root to shoot ratio, TO:0001027 - net photosynthetic rate, TO:0000440 - grain number per plant, TO:0000447 - filled grain number, TO:0000152 - panicle number, TO:0000457 - total biomass yield, TO:0000325 - soluble protein content, TO:0002673 - amino acid content, TO:0000279 - root weight	PO:0007520 - root development stage 
21916	_	GL4, GL4/ObSH4, SH4	_	grain length on chromosome 4, GRAIN LENGTH 4		Oggl4	4	African rice (Oryza glaberrima, Oryza barthii) gene. ORGLA04G0254300. KY427262 (GL4 in Oryza barthii cultivar W1411), KY427263 (truncated GL4 in Oryza glaberrima cultivar irgc102305). TO:0000930: seed shattering.	 Character as QTL - Yield and productivity,  Seed - Morphological traits							TO:0000391 - seed size	
21917	GPAT3	OsGPAT3	GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3 	Glycerol-3-Phosphate Acyltransferase 3	GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3 	osgpat3, gpat3-2, gpat3-3, gpat3-4	11	LOC_Os11g45400. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity. TO:1000022: anther morphology trait. TO:0000602: total fat content.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os11g0679700 	LOC_Os11g45400.1				GO:0043067 - regulation of programmed cell death, GO:0010152 - pollen maturation, GO:0048653 - anther development, GO:0005783 - endoplasmic reticulum, GO:0009555 - pollen development, GO:0010584 - pollen exine formation, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0010143 - cutin biosynthetic process, GO:0008152 - metabolic process, GO:0016746 - transferase activity, transferring acyl groups, GO:0016311 - dephosphorylation, GO:0016791 - phosphatase activity, GO:0046890 - regulation of lipid biosynthetic process	TO:0000392 - sterility or fertility trait, TO:0000187 - anther color, TO:0000602 - total fat content, TO:0000245 - pollen free, TO:0000437 - male sterility	PO:0020048 - microspore , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009071 - anther wall tapetum 
21918	ERANT1	ER-ANT1	ENDOPLASMIC RETICULUM-LOCALIZED ADENINE NUCLEOTIDE TRANSPORTER 1	endoplasmic reticulum-localized adenine nucleotide transporter1, endoplasmic reticulum-localized adenine nucleotide transporter 1	ENDOPLASMIC RETICULUM-LOCALIZED ADENINE NUCLEOTIDE TRANSPORTER 1	er-ant1	11	LOC_Os11g43960.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0661300	LOC_Os11g43960.1				GO:0005986 - sucrose biosynthetic process, GO:0009853 - photorespiration, GO:0034976 - response to endoplasmic reticulum stress, GO:0045333 - cellular respiration, GO:0046902 - regulation of mitochondrial membrane permeability, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0048364 - root development, GO:0048367 - shoot development, GO:0009745 - sucrose mediated signaling, GO:0007623 - circadian rhythm, GO:0005789 - endoplasmic reticulum membrane, GO:0005743 - mitochondrial inner membrane, GO:0005471 - ATP:ADP antiporter activity		
21919	_	PM-ANT	_	plasma membrane-localized adenine nucleotide transporter			5	LOC_Os05g46220.	 Biochemical character	Os05g0539600	LOC_Os05g46220.1				GO:0005743 - mitochondrial inner membrane, GO:0046902 - regulation of mitochondrial membrane permeability, GO:0005471 - ATP:ADP antiporter activity, GO:0016021 - integral to membrane		
21920	PIHK1	Pi-hk1	PYRICULARIA ORYZAE RESISTANCE HK1	Pyricularia oryzae resistance-hk1, Magnaporthe grisea resistance-hk1, Blast resistance hk1			11	Pi-hk1 was finally mapped to a 107-kb region between molecular markers P3586 and ILP3, and co-segregated with the markers P4098, RM7654, and P4099. five genes (Os11g0682600, Os11g0683600, Os11g0684000, Os11g0684100 and Os11g0684200), including three encoded NBS-LRR dis- ease resistance proteins, might be considered to be the candidates of the Pi-hk1 gene. 	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
21921	PIHK2	Pi-hk2	PYRICULARIA ORYZAE RESISTANCE HK2	Pyricularia oryzae resistance-hk2, Magnaporthe grisea resistance-hk2, Blast resistance hk2			9	Pi-hk2 was finally mapped to a 143-kb region between ILP-19 and RM24048. Two genes: LOC_Os09g16510 (WRKY74) and LOC_Os09g16560 (hypothetical protein) might be the candidates of gene Pi-hk2 (He et all 2017).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
21922	_		_	OsMPH1 homologue			2	LOC_Os02g07170.		Os02g0168200	LOC_Os02g07170.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
21923	_		_	OsMPH1 homologue			3	LOC_Os03g03760.		Os03g0129800	LOC_Os03g03730.1, LOC_Os03g03750.1, LOC_Os03g03760.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
21924	MFS2	OsMFS2, MOF1, OsMOF1	MULTI-FLORET SPIKELET 2	OsMPH1 homologue, MORE FLORET 1, more floret1		mfs2, mof1	4	TO:1000024: palea morphology trait. GO:0001217: DNA-binding transcription repressor activity. TO:1000023: lemma morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0566600	LOC_Os04g47890.1				GO:0010093 - specification of floral organ identity, GO:0010076 - maintenance of floral meristem identity, GO:0010582 - floral meristem determinacy, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009909 - regulation of flower development	TO:0006038 - floral organ number, TO:0000622 - flower development trait, TO:0000657 - spikelet anatomy and morphology trait	
21925	_		_	OsMPH1 homologue			10	LOC_Os10g39550.		Os10g0541500	LOC_Os10g39550.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
21926	_		_	OsMPH1 homologue			11	LOC_Os11g01480.		Os11g0106100	LOC_Os11g01480.1				GO:0003677 - DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
21927	_		_	wall-associated receptor-like protein kinase, wall-associated RLK, WAK RLK			2	LOC_Os02g42150.		Os02g0632800	LOC_Os02g42150.1, LOC_Os02g42150.2				GO:0005524 - ATP binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0005886 - plasma membrane, GO:0005509 - calcium ion binding, GO:0030247 - polysaccharide binding, GO:0004674 - protein serine/threonine kinase activity		
21928	_		_	wall-associated receptor-like protein kinase, wall-associated RLK, WAK RLK			4	LOC_Os04g51030.		Os04g0598800	LOC_Os04g51030.1				GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane, GO:0030247 - polysaccharide binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
21929	DTC1	OsDTC1, OsNRP10, NRP10	DEFECTIVE TAPETUM CELL DEATH 1	Defective Tapetum Cell Death 1, N-rich protein 10	N-RICH PROTEIN 10	dtc1, dtc1-1, dtc1-2	7	GO:2000377: regulation of reactive oxygen species metabolic process. GO:0097468: programmed cell death in response to reactive oxygen species.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0540366	LOC_Os07g35610.1				GO:0009556 - microsporogenesis, GO:0010152 - pollen maturation, GO:0048653 - anther development, GO:0005829 - cytosol	TO:0000437 - male sterility	PO:0001004 - anther development stage 
21930	TDF1	OsTDF1, MYB35, OsMYB35	DEFECTIVE IN TAPETAL DEVELOPMENT AND FUNCTION 1	DEFECTIVE in TAPETAL DEVELOPMENT and FUNCTION1		ostdf1	3	an ortholog of Arabidopsis TDF1. GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding. GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting. GO:0044212: transcription regulatory region DNA binding.		Os03g0296000	LOC_Os03g18480.1				GO:0005634 - nucleus, GO:0048653 - anther development, GO:0048658 - tapetal layer development, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0030154 - cell differentiation, GO:0043565 - sequence-specific DNA binding		PO:0001004 - anther development stage 
21931	_		_	Extensin family protein			6	LOC_Os06g08190.1		Os06g0180100	LOC_Os06g08190.1						
21932	_		_	Extensin family protein			1	LOC_Os01g07060.1		Os01g0164300	LOC_Os01g07060.1						
21933	_	OsHyPRP6, HyPRP6	_	Extensin family protein, Hybrid Proline-Rich Protein 6			3			Os03g0250301	LOC_Os03g14615.1						
21934	_		_	Extensin family protein			1	LOC_Os01g53640.1		Os01g0738300	LOC_Os01g53640.1				GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity		
21935	_		_	Extensin family protein			1	LOC_Os01g02040.1		Os01g0110500	LOC_Os01g02040.1, LOC_Os01g02040.2				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation		
21936	_		_	Extensin family protein			6	LOC_Os06g29340.1		Os06g0488050	LOC_Os06g29340.1				GO:0003774 - motor activity, GO:0003779 - actin binding, GO:0016459 - myosin complex, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity		
21937	_		_	Extensin family protein			1	LOC_Os01g20780.1		Os01g0309100	LOC_Os01g20780.1						
21938	_		_	Extensin family protein			1	LOC_Os01g54700.1		Os01g0750600	LOC_Os01g54700.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0007166 - cell surface receptor linked signal transduction, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity		
21939	_		_	Extensin family protein			5	LOC_Os05g47940.1		Os05g0552600	LOC_Os05g47940.1						
21940	_		_	Extensin family protein			11	LOC_Os11g05935.1		Os11g0157701	LOC_Os11g05935.1				GO:0016021 - integral to membrane		
21941	_		_	Extensin family protein			3	LOC_Os03g07640.1			LOC_Os03g07640				GO:0004869 - cysteine-type endopeptidase inhibitor activity		
21942	_	OsHyPRP17, HyPRP17	_	Extensin family protein, Hybrid Proline-Rich Protein 17			6			Os06g0168700	LOC_Os06g07220.1						
21943	_		_	Extensin family protein			1	LOC_Os01g45700.1		Os01g0644600	LOC_Os01g45700.1						
21944	AP1	LECRK-S.7, OsLecRK-S.7, OsDAF1, DAF1, OsLecRK5, LecRK5, OsAP1	ABNORMAL POLLEN 1	Extensin family protein, lectin receptor kinase-S.7, abnormal pollen 1	LECTIN RECEPTOR KINASE-S.7	ap1, oslecrk-s.7, osdaf1-1, osdaf1-2, osdaf1-3, oslecrk5	2	an L-type lectin receptor-like kinase. TO:1000022: anther morphology trait. GO:0062075: pollen aperture formation. OsLecRK5 in Wang et al. 2020.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0459600	LOC_Os02g26160.1, LOC_Os02g26160.2				GO:0005524 - ATP binding, GO:0010962 - regulation of glucan biosynthetic process, GO:0005985 - sucrose metabolic process, GO:0051321 - meiotic cell cycle, GO:0016021 - integral to membrane, GO:0048653 - anther development, GO:0010584 - pollen exine formation, GO:0010208 - pollen wall assembly, GO:0005886 - plasma membrane, GO:0030246 - carbohydrate binding, GO:0002229 - defense response to oomycetes, GO:0009556 - microsporogenesis, GO:0009555 - pollen development, GO:0042742 - defense response to bacterium, GO:0019252 - starch biosynthetic process, GO:0004672 - protein kinase activity, GO:0052543 - callose deposition in cell wall	TO:0000392 - sterility or fertility trait, TO:0000346 - tiller number, TO:0000421 - pollen fertility, TO:0000531 - anther length, TO:0000187 - anther color, TO:0000455 - seed set percent, TO:0000437 - male sterility, TO:0000218 - pollen abortion type, TO:0000696 - starch content	PO:0025281 - pollen , PO:0009051 - spikelet , PO:0009038 - palea , PO:0020048 - microspore , PO:0009037 - lemma , PO:0009066 - anther , PO:0001004 - anther development stage , PO:0025034 - leaf , PO:0020047 - microsporocyte , PO:0009005 - root , PO:0001007 - pollen development stage , PO:0009047 - stem 
21945	_		_	Extensin family protein			1	LOC_Os01g25460.1		Os01g0356900	LOC_Os01g25460.1						
21946	_		_	Extensin family protein			6	LOC_Os06g49100.1		Os06g0704500	LOC_Os06g49100.1						
21947	_		_	Extensin family protein			1	LOC_Os01g41120.1		Os01g0594300	LOC_Os01g41120.1						
21948	PEX1	OsPEX1	POLLEN EXTENSIN 1	Extensin family protein, pollen extensin 1	POLLEN EXTENSIN 1	pex1	11		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os11g0657400	LOC_Os11g43640.1				GO:0009809 - lignin biosynthetic process	TO:0000731 - lignin content, TO:0000207 - plant height, TO:0000068 - lodging incidence, TO:0000051 - stem strength	
21949	COG2	OsCOG2	COLD-TOLERANCE IN GENG RICE 2	Extensin family protein	COLD-TOLERANCE IN GENG RICE 2		1	TO:0000993: cellulose content.	 Tolerance and resistance - Stress tolerance	Os01g0899700	LOC_Os01g67390.1				GO:0009505 - plant-type cell wall, GO:0009409 - response to cold, GO:0009664 - plant-type cell wall organization	TO:0000303 - cold tolerance	
21950	_		_	Extensin family protein			1	LOC_Os01g08470.1		Os01g0180000	LOC_Os01g08470.1						
21951	_		_	O-glucosyltransferase 2			8	LOC_Os08g07180. 	 Biochemical character		LOC_Os08g07180						
21952	_		_				6	LOC_Os06g44930. 		Os06g0659800	LOC_Os06g44930.1						
21953	FSD1.1 	OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1, OsFSD2, FSD2	FE-DEPENDENT SUPEROXIDE DISMUTASE 1.1	Fe-dependent SOD 1.1, Fe-dependent superoxide dismutase 1.1	FE-DEPENDENT SUPEROXIDE DISMUTASE 1.1		6	Q5VRL3. OsFSD2 in Navarro et al. 2021. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0115400	LOC_Os06g02500.1				GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0046688 - response to copper ion, GO:0004784 - superoxide dismutase activity, GO:0046872 - metal ion binding	TO:0000021 - copper sensitivity, TO:0006001 - salt tolerance	
21954	_	OsCDGSH, CDGSH	_				7	Fe-sulfur domain-contain protein. GO:0072593: reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0467200	LOC_Os07g28400.1				GO:0055072 - iron ion homeostasis, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0010150 - leaf senescence, GO:0009570 - chloroplast stroma, GO:0005739 - mitochondrion, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
21955	_		_	M50 family peptidase			3	LOC_Os03g51920. Q851F9.	 Biochemical character	Os03g0729000	LOC_Os03g51920.1				GO:0008237 - metallopeptidase activity, GO:0009408 - response to heat, GO:0009644 - response to high light intensity, GO:0042542 - response to hydrogen peroxide, GO:0031969 - chloroplast membrane, GO:0016021 - integral to membrane		
21956	CHX15	OsCHX15	CATION/H+ EXCHANGER  15	Cation proton exchanger, cation/H+ exchanger  15	CATION/H+ EXCHANGER  15		12		 Biochemical character	Os12g0616500	LOC_Os12g42200.1				GO:0012505 - endomembrane system, GO:0016021 - integral to membrane, GO:0015672 - monovalent inorganic cation transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0006885 - regulation of pH		
21957	_		_	Aspartate-semialdehyde dehydrogenase			3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0760700	LOC_Os03g55280.1				GO:0009651 - response to salt stress, GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity, GO:0004073 - aspartate-semialdehyde dehydrogenase activity, GO:0009086 - methionine biosynthetic process, GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0009097 - isoleucine biosynthetic process, GO:0046983 - protein dimerization activity, GO:0050661 - NADP or NADPH binding, GO:0005739 - mitochondrion, GO:0051287 - NAD or NADH binding, GO:0009570 - chloroplast stroma, GO:0009088 - threonine biosynthetic process	TO:0006001 - salt tolerance	
21958	_		_	1-Aminocyclopropane-1-carboxylic acid oxidase			6		 Biochemical character	Os06g0573900	LOC_Os06g37590.1				GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding		
21959	_		_	Autophagy-related; C-terminal domain-containing protein			6	GO:0044804: autophagy of nucleus.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0267600	LOC_Os06g15700.1				GO:0000407 - pre-autophagosomal structure, GO:0000045 - autophagic vacuole formation, GO:0030242 - peroxisome degradation, GO:0019898 - extrinsic to membrane, GO:0000422 - mitochondrion degradation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21960	FYVE16	OsFYVE16	FYVE DOMAIN-CONTAINING PROTEIN 16	FYVE finger-containing phosphoinositide kinase	FYVE DOMAIN-CONTAINING PROTEIN 16		7		 Tolerance and resistance - Stress tolerance	Os07g0573300	LOC_Os07g38580.1				GO:0046872 - metal ion binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
21961	_		_	thiol-disulphide oxidoreductase DCC family protein			4		 Biochemical character	Os04g0668800	LOC_Os04g57310.1, LOC_Os04g57310.2				GO:0042246 - tissue regeneration, GO:0005739 - mitochondrion, GO:0015035 - protein disulfide oxidoreductase activity		
21962	_		_	CDK5RAP1-like protein			11	Q2R1U4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0592800	LOC_Os11g38030.1				GO:0009651 - response to salt stress, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0006400 - tRNA modification, GO:0046872 - metal ion binding, GO:0016740 - transferase activity, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance	
21963	_	OsBTBP2, BTBP2	_	Potassium channel tetramerisation domain-containing protein 9, BTB-type E3 ubiquitin ligase P2			10			Os10g0438000	LOC_Os10g30190.1				GO:0051260 - protein homooligomerization		
21964	_	EP	_	Expressed protein			5	LOC_Os05g08980. EP can be used reliably for quantitating the expression of genes involved in abiotic stress responses (Maksup et al. 2013).		Os05g0182700	LOC_Os05g08980.1, LOC_Os05g08980.2, LOC_Os05g08980.3, LOC_Os05g08980.4						
21965	_	HNR27C, HNR	_	Heterogeneous nuclear ribonucleoprotein 27C			1	LOC_Os01g71770. HNR can be used reliably for quantitating the expression of genes involved in abiotic stress responses (Maksup et al. 2013).		Os01g0945800	LOC_Os01g71770.1				GO:0003723 - RNA binding		
21966	_	TBC22A, TBC	_	TBC1 domain family member 22A			9	LOC_Os09g34040. TBC can be used reliably for quantitating the expression of genes involved in abiotic stress responses (Maksup et al. 2013). GO:0090630: activation of GTPase activity.		Os09g0515800	LOC_Os09g34040.1				GO:0031338 - regulation of vesicle fusion, GO:0012505 - endomembrane system, GO:0006886 - intracellular protein transport, GO:0005622 - intracellular, GO:0005096 - GTPase activator activity, GO:0017137 - Rab GTPase binding		
21967	_	GL6	_	glabrous 6			6	The GL6 gene was fine mapped in the interval between InDel-106 and InDel-115 at genetic distances of 0.3 and 0.1 cM, respectively. Seven annotated genes (japonica) including an AP2 domain-contain- ing protein (LOC_Os06g44750) and a PPR domain-containing protein (LOC_Os06g44820) were present. (Zeng et al. 2013)	 Vegetative organ - Leaf							TO:0002722 - leaf pubescence	
21968	_		_	Putative cysteine synthase			6		 Tolerance and resistance - Stress tolerance	Os06g0564400	LOC_Os06g36830.1				GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
21969	SAT2;1	OsSAT2;1	SERINE ACETYLTRANSFERASE 2;1	Probable serine acetyltransferase 3, serine acetyltransferase 2;1	SERINE ACETYLTRANSFERASE 2;1		3	Q0DUI1.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0185000	LOC_Os03g08660.1				GO:0009970 - cellular response to sulfate starvation, GO:0042594 - response to starvation, GO:0046688 - response to copper ion, GO:0009001 - serine O-acetyltransferase activity, GO:0019344 - cysteine biosynthetic process, GO:0006535 - cysteine biosynthetic process from serine, GO:0005829 - cytosol, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000007 - sulfur sensitivity, TO:0000021 - copper sensitivity	PO:0025034 - leaf 
21970	_		_	Thioredoxin-like 3-3			4	Q7XSQ7.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0560200	LOC_Os04g47260.1				GO:0006662 - glycerol ether metabolic process, GO:0015035 - protein disulfide oxidoreductase activity, GO:0047134 - protein-disulfide reductase activity, GO:0005737 - cytoplasm, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0045454 - cell redox homeostasis, GO:0034599 - cellular response to oxidative stress, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity	
21971	_		_	Mannan endo-1, 4-beta-mannosidase 7			11	Q2RBB1.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0118200	LOC_Os11g02600.1				GO:0046688 - response to copper ion, GO:0046355 - mannan catabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0016985 - mannan endo-1,4-beta-mannosidase activity	TO:0000021 - copper sensitivity	
21972	GSK9	OsSK31/OsGSK9, OsSK31, OsGSK9, SK31	GSK3-LIKE KINASE 9	GSK3/SHAGGY-Like Kinase 31, GSK3-like Kinase 9	GSK3-LIKE KINASE 9		10	a GSK3/SHAGGY-like kinase clade III member. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0521700	LOC_Os10g37740.1				GO:0005524 - ATP binding, GO:0046688 - response to copper ion, GO:0004674 - protein serine/threonine kinase activity, GO:0007165 - signal transduction, GO:0006468 - protein amino acid phosphorylation	TO:0000021 - copper sensitivity	
21973	_		_	Putative 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase			12	Q2QLY4. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0624000	LOC_Os12g42884.1, LOC_Os12g42884.2, LOC_Os12g42884.3				GO:0005829 - cytosol, GO:0005576 - extracellular region, GO:0046688 - response to copper ion, GO:0008705 - methionine synthase activity, GO:0008270 - zinc ion binding, GO:0050667 - homocysteine metabolic process, GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	TO:0000021 - copper sensitivity	
21974	_		_	putative glutathione S-transferase			3	AAN05496. 	 Biochemical character,  Tolerance and resistance - Stress tolerance						GO:0046688 - response to copper ion, GO:0004364 - glutathione transferase activity, GO:0006749 - glutathione metabolic process, GO:0005737 - cytoplasm	TO:0000021 - copper sensitivity	
21975	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g19390. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0299300	LOC_Os01g19390.1				GO:0010143 - cutin biosynthetic process, GO:0016791 - phosphatase activity, GO:0016311 - dephosphorylation, GO:0016021 - integral to membrane, GO:0016020 - membrane		
21976	_	GPAT	_	glycerol-3-phosphate acyltransferase			10	LOC_Os10g41070. 	 Biochemical character	Os10g0560100	LOC_Os10g41070.1				GO:0008152 - metabolic process, GO:0016021 - integral to membrane, GO:0016746 - transferase activity, transferring acyl groups		
21977	_	GPAT	_	glycerol-3-phosphate acyltransferase			5	LOC_Os05g20100. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os05g0280500	LOC_Os05g20100.1				GO:0016791 - phosphatase activity, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane		
21978	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g22560. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0329000	LOC_Os01g22560.1, LOC_Os01g22570.1				GO:0010143 - cutin biosynthetic process, GO:0016791 - phosphatase activity, GO:0016311 - dephosphorylation, GO:0016021 - integral to membrane, GO:0016020 - membrane		
21979	_	GPAT	_	glycerol-3-phosphate acyltransferase			12	LOC_Os12g37600. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os12g0563000	LOC_Os12g37600.1				GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016311 - dephosphorylation, GO:0016791 - phosphatase activity		
21980	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g44069. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0631400	LOC_Os01g44069.1				GO:0016791 - phosphatase activity, GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation		
21981	_	GPAT	_	glycerol-3-phosphate acyltransferase			8	LOC_Os08g03700. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os08g0131300	LOC_Os08g03700.1				GO:0016791 - phosphatase activity, GO:0016020 - membrane, GO:0010143 - cutin biosynthetic process, GO:0016021 - integral to membrane, GO:0008152 - metabolic process, GO:0016746 - transferase activity, transferring acyl groups, GO:0016311 - dephosphorylation		
21982	_	GPAT, OsGPAT	_	glycerol-3-phosphate acyltransferase			5	LOC_Os05g38350. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os05g0457800	LOC_Os05g38350.1				GO:0016311 - dephosphorylation, GO:0010143 - cutin biosynthetic process, GO:0016791 - phosphatase activity, GO:0016021 - integral to membrane, GO:0016020 - membrane		
21983	RAM2L	GPAT, OsRAM2L	REQUIRED FOR ARBUSCULAR MYCORRHIZATION 2-LIKE	glycerol-3-phosphate acyltransferase, Required for Arbuscular Mycorrhization2-like			10	orthologous to MtRAM2. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os10g0413400	LOC_Os10g27330.1				GO:0008152 - metabolic process, GO:0016746 - transferase activity, transferring acyl groups, GO:0016791 - phosphatase activity, GO:0016311 - dephosphorylation, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0010143 - cutin biosynthetic process		PO:0009005 - root 
21984	RAM2	GPAT, OsRAM2	REQUIRED FOR ARBUSCULAR MYCORRHIZATION 2	glycerol-3-phosphate acyltransferase, Required for Arbuscular Mycorrhization2		Osram2, Osram2-1, Osram2-2, Osram2-3	3	orthologous to MtRAM2. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character	Os03g0735900	LOC_Os03g52570.1				GO:0016311 - dephosphorylation, GO:0016791 - phosphatase activity, GO:0008152 - metabolic process, GO:0016746 - transferase activity, transferring acyl groups, GO:0009610 - response to symbiotic fungus, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0006869 - lipid transport, GO:0010143 - cutin biosynthetic process, GO:0008610 - lipid biosynthetic process		PO:0009005 - root , PO:0000258 - root cortex 
21985	_	GPAT	_	glycerol-3-phosphate acyltransferase			2	one of the three close paralogs of MtRAM2 in rice. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os02g0114400	LOC_Os02g02340.1				GO:0010143 - cutin biosynthetic process, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation, GO:0016020 - membrane, GO:0016791 - phosphatase activity		PO:0009005 - root 
21986	_	GPAT	_	glycerol-3-phosphate acyltransferase			5	one of the three close paralogs of MtRAM2 in rice.	 Biochemical character	Os05g0448300	LOC_Os05g37600.1				GO:0008152 - metabolic process, GO:0016746 - transferase activity, transferring acyl groups		
21987	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	one of the three close paralogs of MtRAM2 in rice. GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity.	 Biochemical character	Os01g0855000	LOC_Os01g63580.1				GO:0010143 - cutin biosynthetic process, GO:0016020 - membrane, GO:0016791 - phosphatase activity, GO:0016021 - integral to membrane, GO:0016311 - dephosphorylation		PO:0009005 - root 
21988	_	GPAT	_	glycerol-3-phosphate acyltransferase			1	LOC_Os01g14900. 	 Biochemical character		LOC_Os01g14900						
21989	_	PR5	_				12										
21990	_	EIP2	_	EBR1-interacting protein 2			9	LOC_Os09g39260.	 Biochemical character	Os09g0566000	LOC_Os09g39260.1				GO:0009094 - L-phenylalanine biosynthetic process, GO:0047769 - arogenate dehydratase activity, GO:0009570 - chloroplast stroma, GO:0009507 - chloroplast		
21991	_	EIP3	_	EBR1-interacting protein 3			9	LOC_Os09g39230.	 Biochemical character	Os09g0565700 	LOC_Os09g39230.1				GO:0009094 - L-phenylalanine biosynthetic process, GO:0009507 - chloroplast, GO:0009570 - chloroplast stroma, GO:0047769 - arogenate dehydratase activity		
21992	_	EIP4	_	EBR1-interacting protein 4			2	LOC_Os02g25840.		Os02g0456000 	LOC_Os02g25840.1				GO:0007030 - Golgi organization, GO:0017119 - Golgi transport complex, GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER, GO:0000301 - retrograde transport, vesicle recycling within Golgi, GO:0048213 - Golgi vesicle prefusion complex stabilization		
21993	_	EIP6	_	EBR1-interacting protein 6			9	LOC_Os09g39560.	 Biochemical character	Os09g0569100 	LOC_Os09g39560.1				GO:0005737 - cytoplasm, GO:0009231 - riboflavin biosynthetic process, GO:0006468 - protein amino acid phosphorylation, GO:0043621 - protein self-association, GO:0016791 - phosphatase activity		
21994	_	EIP7	_	EBR1-interacting protein 7			2	LOC_Os02g09180.		Os02g0184500 	LOC_Os02g09180.1						
21995	EIP8	OsEIP8, OsVOZ1, VOZ1	EBR1-INTERACTING PROTEIN 8	EBR1-interacting protein 8, vascular one zinc-finger 1, VASCULAR PLANT ONE-ZINC FINGER 1	EBR1-INTERACTING PROTEIN 8	osvoz1, osvoz1-1, osvoz1cas9-1, osvoz1cas9-2	1	GO:1900425: negative regulation of defense response to bacterium. GO:0140426: PAMP-triggered immunity signalling pathway. GO:0140590: effector-mediated suppression of host defenses. GO:1900150: regulation of defense response to fungus. TO:0006054: arsenic content trait. GO:0110126: phloem loading.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os01g0753000 	LOC_Os01g54930.1				GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium, GO:0046685 - response to arsenic	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000207 - plant height, TO:0000482 - chemical stress sensitivity	PO:0005417 - phloem , PO:0005421 - parenchyma , PO:0005352 - xylem 
21996	_	EIP10	_	EBR1-interacting protein 10			1	LOC_Os01g60440.		Os01g0819900 	LOC_Os01g60440.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
21997	_	EIP11	_	EBR1-interacting protein 11			8	LOC_Os08g37130.		Os08g0476300 	LOC_Os08g37130.1						
21998	_		_	Acyl desaturase			1	Q8LJJ9. B8A7A3. rice ortholog of stearoyl-acyl carrier protein 9-desaturase 6 gene. GO:0102786: stearoyl-[acp] desaturate activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0880800 	LOC_Os01g65830.1				GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity, GO:0001666 - response to hypoxia, GO:0006633 - fatty acid biosynthetic process, GO:0009507 - chloroplast, GO:0046872 - metal ion binding		
21999	CFBP2	OscFBP2, cFBP2	CYTOSOLIC FRUCTOSE-1,6-BIPHOSPHATE 2	"FBPase, \" fructose-1, 6-bisphosphatase\", \"cytosolic fructose-1, 6-biphosphate 2\", \"cytosolic fructose 1, 6-bisphosphatase2\""	CYTOSOLIC FRUCTOSE-1,6-BIPHOSPHATE 2	oscfbp2-m1, oscfbp2-m2	5		 Biochemical character	Os05g0438600	LOC_Os05g36270.3, LOC_Os05g36270.2, LOC_Os05g36270.1				GO:0006000 - fructose metabolic process, GO:0015979 - photosynthesis, GO:0009737 - response to abscisic acid stimulus, GO:0060359 - response to ammonium ion, GO:0006094 - gluconeogenesis, GO:0005986 - sucrose biosynthetic process, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009750 - response to fructose stimulus, GO:0005983 - starch catabolic process, GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0030388 - fructose 1,6-bisphosphate metabolic process, GO:0006002 - fructose 6-phosphate metabolic process	TO:0000328 - sucrose content, TO:0000346 - tiller number	PO:0000071 - companion cell 
22000	_	SnRK1, OsSnRK1, OsSnRK3.9, SnRK3.9	_	SnRK1 subfamily protein, SNF1-related protein kinase 1 subfamily protein, Sucrose nonfermenting-1-related protein kinase 3.9			2	GO:0035556: intracellular signal transduction. regulated by osa-miR528-3p. OsSnRK3.9 in Chen et al. 2021.	 Biochemical character	Os02g0178000	LOC_Os02g08140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding		
22001	CHR715	SnRK2, OsCHR715, OsRING432, RING432	CHROMATIN REMODELING FACTOR 715	SnRK2 subfamily protein, SNF1-related protein kinase 2 subfamily protein, chromatin remodeling factor 715, RING-type E3 ubiquitin ligase 432	CHROMATIN REMODELING FACTOR 715		4	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0629300	LOC_Os04g53720.1				GO:0009414 - response to water deprivation, GO:0006281 - DNA repair, GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0044260 - cellular macromolecule metabolic process, GO:0044238 - primary metabolic process, GO:0009651 - response to salt stress, GO:0008094 - DNA-dependent ATPase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
22002	_	BiP3	_	IgG binding protein 3, ER stress-related gene BiP3			6			Os06g0212900	LOC_Os06g10990.1				GO:0005524 - ATP binding		
22003	_	SEC61	_				9			Os09g0347700	LOC_Os09g17840.1				GO:0015031 - protein transport, GO:0016021 - integral to membrane		
22004	_		_	PGR5-like protein 1a, proton gradient regulation-5 like protein 1a			3			Os03g0857400	LOC_Os03g64020.1, LOC_Os03g64020.2				GO:0016021 - integral to membrane		
22005	LH1		LATE HEADING 1	late heading 1			7	LH1 was confined to the 63.7-kb region flanked by the SSR markers RM5436 and RM8034. candidate genes: LOC_Os7g15570, LOC_Os07g15600 and LOC_Os7g15640.	 Reproductive organ - Heading date						GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time	
22006	LH2		LATE HEADING 2	late heading 2			8	LH2 was mapped between Indel22468-3 and RM25 with a physical distance of 177 kb. candidate genes: LOC_Os08g07660, LOC_Os08g07730 and LOC_Os08g07810.	 Reproductive organ - Heading date						GO:0048573 - photoperiodism, flowering	TO:0002616 - flowering time	
22007	PME11	PME11, OsPME11	PECTIN METHYLESTERASE 11	pectin methylesterase 11	PECTIN METHYLESTERASE 11		2	LOC_Os02g46310.	 Biochemical character	Os02g0688400	LOC_Os02g46310.1				GO:0045330 - aspartyl esterase activity, GO:0005618 - cell wall, GO:0030599 - pectinesterase activity, GO:0042545 - cell wall modification, GO:0045490 - pectin catabolic process		
22008	PMEI1	PMEI-1, OsPMEI1	PECTIN METHYLESTERASE INHIBITOR 1	PME inhibitor 1, pectin methylesterase inhibitor 1	PECTIN METHYLESTERASE INHIBITOR 1		1		 Biochemical character	Os01g0111000	LOC_Os01g02070.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
22009	JMT2	JMT-2, OsJMT-2, OsJMT2	JASMONIC ACID CARBOXY METHYL TRANSFERASE 2	JA carboxy methyl transferase 2, jasmonic acid carboxy methyl transferase 2	JASMONIC ACID CARBOXY METHYL TRANSFERASE 2		2	SABATH methyltransferase Group A2.	 Biochemical character	Os02g0719600	LOC_Os02g48770.1				GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008168 - methyltransferase activity		
22010	JMT1	JMT-1, OsJMT-1, OsJMT1	JASMONIC ACID CARBOXY METHYL TRANSFERASE 1	JA carboxy methyl transferase 1, jasmonic acid carboxy methyl transferase 1	JASMONIC ACID CARBOXY METHYL TRANSFERASE 1		6	SABATH methyltransferase Group A1.	 Biochemical character	Os06g0314600	LOC_Os06g20920.2, LOC_Os06g20920.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation, GO:0008168 - methyltransferase activity		
22013	ACX4	OsACX4, OsACOX1, ACOX1	ACYL-COA OXIDASE 4	acyl-CoA oxidase 4	ACYL-COA OXIDASE 4		5		 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0163700	LOC_Os05g07090.3, LOC_Os05g07090.1				GO:0002213 - defense response to insect, GO:0050660 - FAD binding, GO:0003995 - acyl-CoA dehydrogenase activity, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000424 - brown planthopper resistance, TO:0000615 - abscisic acid sensitivity	
22014	GEX3	OsGEX3	GAMETE-EXPRESSED 3	Quinonprotein alcohol dehydrogenase-like domain-containing protein, gamete-expressed 3	GAMETE-EXPRESSED PROTEIN 3		1		 Tolerance and resistance - Stress tolerance,  Reproductive organ	Os01g0605400 	LOC_Os01g42060.1				GO:0005886 - plasma membrane, GO:0010183 - pollen tube guidance, GO:0006970 - response to osmotic stress, GO:0009793 - embryonic development ending in seed dormancy, GO:0016021 - integral to membrane	TO:0000095 - osmotic response sensitivity	PO:0000084 - plant sperm cell 
22015	_		_	Hypothetical conserved gene			2		 Reproductive organ	Os02g0664400  	LOC_Os02g44530.1						PO:0000084 - plant sperm cell 
22016	_	PEG1, OsPEG1	_	paternally expressed gene1		peg1-1, peg1-2	1	Similar to Oxidoreductase. a 2-oxoglutarate and iron-dependent oxygenase. TO:1000022: anther morphology trait. ROS1a Target gene.	 Reproductive organ,  Biochemical character,  Seed - Morphological traits,  Seed - Physiological traits - Storage substances,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0180900 	LOC_Os01g08570.1				GO:0031418 - L-ascorbic acid binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000304 - seed thickness, TO:0000391 - seed size, TO:0000696 - starch content	PO:0000084 - plant sperm cell , PO:0009089 - endosperm 
22017	_		_	Hypothetical conserved gene			7		 Reproductive organ	Os07g0634100  	LOC_Os07g44030.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding		PO:0000084 - plant sperm cell 
22018	_		_	Hypothetical conserved gene			10		 Reproductive organ	Os10g0550400   	LOC_Os10g40280.1						PO:0000084 - plant sperm cell 
22019	_		_	Hypothetical conserved gene			1		 Reproductive organ	Os01g0853600    	LOC_Os01g63444.1, LOC_Os01g63444.2						PO:0000084 - plant sperm cell 
22020	_		_	Peptidase, trypsin-like serine and cysteine domain-containing protein			3		 Reproductive organ	Os03g0661900     	LOC_Os03g45980.1						PO:0000084 - plant sperm cell 
22021	_		_	Protein of unknown function DUF248, methyltransferase putative family protein			11		 Reproductive organ,  Biochemical character	Os11g0601600      	LOC_Os11g38860.1				GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0016021 - integral to membrane, GO:0005737 - cytoplasm		PO:0000084 - plant sperm cell 
22022	_		_	Conserved hypothetical protein			2		 Reproductive organ	Os02g0177400      	LOC_Os02g08080.1						PO:0000084 - plant sperm cell 
22023	_		_	ubiquitin fusion protein			9	Similar to UBQ13 (ubiquitin 13).	 Reproductive organ	Os09g0483200       	LOC_Os09g31019.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome		PO:0000084 - plant sperm cell 
22024	_		_	Conserved hypothetical protein			9		 Reproductive organ	Os09g0244200        							PO:0000084 - plant sperm cell 
22025	_		_	Hypothetical conserved gene			11		 Reproductive organ	Os11g0620800         	LOC_Os11g40560.1						PO:0000084 - plant sperm cell 
22026	_		_	Hypothetical gene			2		 Reproductive organ	Os02g0628100          							PO:0000084 - plant sperm cell 
22027	FEB1	OsFEB1	FERTILIZATION BARRIER 1	Fertilization barrier 1			3	Similar to ECA1 protein. GO:0080155: regulation of double fertilization forming a zygote and endosperm. GO:2000008: regulation of protein localization to cell surface. GO:0080173: male-female gamete recognition during double fertilization forming a zygote and endosperm.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ	Os03g0296600           	LOC_Os03g18530.1				GO:0048240 - sperm capacitation, GO:0005622 - intracellular, GO:0005576 - extracellular region, GO:0009566 - fertilization, GO:0009567 - double fertilization forming a zygote and endosperm, GO:0031982 - vesicle	TO:0000455 - seed set percent	PO:0020094 - plant egg cell 
22028	_		_				5	Similar to LRR protein.	 Reproductive organ	Os05g0491400            	LOC_Os05g41230.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane		PO:0020094 - plant egg cell 
22029	SUMO3	OsSUMO3	SMALL UBIQUITIN LIKE MODIFIER 3	Ubiquitin domain-containing protein, small ubiquitin like modifier 3, small ubiquitin like modifier protein 3, SUMO protein 3	SMALL UBIQUITIN LIKE MODIFIER 3		7		 Reproductive organ	Os07g0574500             	LOC_Os07g38690.1				GO:0016925 - protein sumoylation, GO:0031386 - protein tag, GO:0005634 - nucleus		PO:0009051 - spikelet , PO:0009010 - seed , PO:0025034 - leaf , PO:0009005 - root , PO:0020103 - flag leaf , PO:0020094 - plant egg cell 
22030	_		_	Allergen V5/Tpx-1 related family protein			4		 Reproductive organ	Os04g0289600              	LOC_Os04g22220.1						PO:0020094 - plant egg cell 
22031	_		_	3'-5' exonuclease domain-containing protein			1		 Reproductive organ	Os01g0299700               	LOC_Os01g19420.1				GO:0008408 - 3'-5' exonuclease activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		PO:0020094 - plant egg cell 
22032	_		_	Conserved hypothetical protein			7		 Reproductive organ	Os07g0136300                	LOC_Os07g04330.1				GO:0016021 - integral to membrane		PO:0020094 - plant egg cell 
22033	_		_				3	Similar to TPR Domain-containing protein	 Reproductive organ	Os03g0679800                 	LOC_Os03g47614.1, LOC_Os03g47620.1						PO:0020094 - plant egg cell 
22034	_		_	Protein of unknown function Cys-rich family protein			10		 Reproductive organ	Os10g0560200                  	LOC_Os10g41083.1				GO:0016021 - integral to membrane		PO:0020094 - plant egg cell 
22035	_		_	Conserved hypothetical protein			1		 Reproductive organ	Os01g0350500                   	LOC_Os01g24840.1						PO:0020094 - plant egg cell 
22036	_		_	Armadillo-like helical domain-containing protein			11		 Reproductive organ	Os11g0579900                    	LOC_Os11g37090.1				GO:0003723 - RNA binding		PO:0020094 - plant egg cell 
22037	_	OsFDML4, FDML4	_	Region of unknown function XH domain-containing protein, FACTOR OF DNA METHYLATION LIKE 4			5	LOC_Os05g06130.	 Reproductive organ	Os05g0153200                     	LOC_Os05g06130.1				GO:0005655 - nucleolar ribonuclease P complex, GO:0031047 - gene silencing by RNA		PO:0020094 - plant egg cell 
22038	_		_	Lipase class 3 family protein			1	down-regulated after fertilization (Abiko et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character	Os01g0936200                      	LOC_Os01g71010.1, LOC_Os01g71010.2				GO:0016787 - hydrolase activity, GO:0006629 - lipid metabolic process, GO:0009566 - fertilization		
22039	_		_	Aromatic-ring hydroxylase family protein			3	GO:0071949: FAD binding. GO:0044550: secondary metabolite biosynthetic process. down-regulated after fertilization (Abiko et al. 2013).	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os03g0154000                       	LOC_Os03g05910.1, LOC_Os03g05910.2, LOC_Os03g05910.3				GO:0004497 - monooxygenase activity, GO:0009566 - fertilization		
22040	_		_	Dormancyauxin associated family protein			8	down-regulated after fertilization (Abiko et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility	Os08g0453200                      	LOC_Os08g35190.1, LOC_Os08g35190.2, LOC_Os08g35190.3				GO:0009566 - fertilization		
22041	_		_	"\"Leucine-rich repeat, cysteine-containing subtype-containing protein\""			4	down-regulated after fertilization (Abiko et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility	Os04g0503500                       	LOC_Os04g42470.1, LOC_Os04g42470.2, LOC_Os04g42470.3, LOC_Os04g42470.4, LOC_Os04g42470.5, LOC_Os04g42470.6, LOC_Os04g42470.7, LOC_Os04g42470.8				GO:0009566 - fertilization		
22042	MGD3	OsMGD3	MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 3	"\"Leucine-rich repeat, cysteine-containing subtype-containing protein\", MGDG synthase 3"	MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 3		8	Q6UTZ2. Similar to MGDG synthase type A. down-regulated after fertilization (Abiko et al. 2013).	 Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0299400                        	LOC_Os08g20420.2, LOC_Os08g20420.1				GO:0009247 - glycolipid biosynthetic process, GO:0031969 - chloroplast membrane, GO:0046509 - 1,2-diacylglycerol 3-beta-galactosyltransferase activity, GO:0009566 - fertilization, GO:0006794 - phosphorus utilization, GO:0042594 - response to starvation	TO:0000604 - fat and essential oil content, TO:0000627 - relative phosphorus utilization efficiency, TO:0000102 - phosphorus sensitivity	PO:0025034 - leaf 
22043	_		_	High mobility group, HMG1/HMG2 domain-containing protein			2	up-regulated after fertilization (Abiko et al. 2013).		Os02g0258200                         	LOC_Os02g15810.1				GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0003677 - DNA binding		
22044	CRT3	CRT2, OsCRT2, OsCRT3	CALRETICULIN 3	calreticulin	CALRETICULIN 3	oscrt3-1	1	Similar to Calreticulin 3. up-regulated after fertilization (Abiko et al. 2013). CRT2 in Meng et al. 2022. GO:1903514: release of sequestered calcium ion into cytosol by endoplasmic reticulum. GO:0035584: calcium-mediated signaling using intracellular calcium source.	 Tolerance and resistance - Stress tolerance	Os01g0895600                          	LOC_Os01g67054.3, LOC_Os01g67054.2, LOC_Os01g67054.1				GO:0009409 - response to cold, GO:0019722 - calcium-mediated signaling, GO:0051279 - regulation of release of sequestered calcium ion into cytosol, GO:0005509 - calcium ion binding, GO:0051082 - unfolded protein binding, GO:0009790 - embryonic development, GO:0006457 - protein folding, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0006986 - response to unfolded protein, GO:0016048 - detection of temperature stimulus	TO:0000303 - cold tolerance	
22045	_		_	Conserved hypothetical protein			10	up-regulated after fertilization (Abiko et al. 2013).		Os10g0580900                           	LOC_Os10g43060.1				GO:0009790 - embryonic development		
22046	MATE34	OsMATE34	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 34	multidrug and toxic compound extrusion 34	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 34		8	Similar to Transparent testa 12 protein. up-regulated after fertilization (Abiko et al. 2013). TO:0001109: grain color trait.	 Coloration - Anthocyanin,  Seed - Morphological traits,  Biochemical character	Os08g0562800	LOC_Os08g44870.1, LOC_Os08g44870.2, LOC_Os08g44870.3				GO:0009790 - embryonic development, GO:0016021 - integral to membrane, GO:0015238 - drug transporter activity, GO:0015297 - antiporter activity, GO:0006855 - multidrug transport, GO:0005773 - vacuole, GO:0005886 - plasma membrane	TO:0000071 - anthocyanin content	
22047	_		_	Conserved hypothetical protein			1	up-regulated after fertilization (Abiko et al. 2013).		Os01g0551000 	LOC_Os01g37040.1				GO:0009790 - embryonic development		
22048	_		_	Protein kinase PKN/PRK1 effector domain-containing protein			2	up-regulated after fertilization (Abiko et al. 2013).		Os02g0572600  	LOC_Os02g36350.1, LOC_Os02g36350.2				GO:0009790 - embryonic development		
22049	CHR735	OsCHR735, OsRING284, RING284	CHROMATIN REMODELING FACTOR 735	DEAD-like helicase N-terminal domain-containing protein, chromatin remodeling factor 735, RING-type E3 ubiquitin ligase 284	CHROMATIN REMODELING FACTOR 735		4	up-regulated after fertilization (Abiko et al. 2013). GO:0140658: ATP-dependent chromatin remodeler activity.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0177300   	LOC_Os04g09800.1				GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0044260 - cellular macromolecule metabolic process, GO:0044238 - primary metabolic process, GO:0009651 - response to salt stress, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing, GO:0009294 - DNA mediated transformation, GO:0005634 - nucleus, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0009790 - embryonic development, GO:0003676 - nucleic acid binding	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
22050	_	OsPR5, PR5	_	pathogenesis-related gene 5			4	LOC_Os04g59370.	 Tolerance and resistance - Stress tolerance	Os04g0689900 	LOC_Os04g59370.1				GO:0009414 - response to water deprivation, GO:0009845 - seed germination	TO:0000276 - drought tolerance	PO:0007057 - 0 seed germination stage 
22051	WIN1	BTBN6, OsBTBN6, BTBN6	WINDING 1	BTBN protein 6, BTB-type E3 ubiquitin ligase N6			3	LOC_Os03g22600. GO:0060918: auxin transport.		Os03g0347700	LOC_Os03g22600.1				GO:0016049 - cell growth, GO:0045177 - apical part of cell, GO:0045178 - basal part of cell, GO:0005886 - plasma membrane, GO:0009506 - plasmodesma	TO:0002672 - auxin content	PO:0009005 - root 
22052	KOD1	OsKOD1	KISS OF DEATH 1	kiss of death 1			4	a cell death-related gene.	 Tolerance and resistance - Stress tolerance	Os04g0507950 					GO:0010446 - response to alkalinity	TO:0000481 - alkali sensitivity	
22053	CSIL1	OsCSIL1, OsC2DP48, C2DP48	CELLULOSE SYNTHASE INTERACTING1-LIKE 1	CSI-like 1, CELLULOSE SYNTHASE INTERACTING1-like 1, C2 Domain-Containing Protein 48	CELLULOSE SYNTHASE INTERACTING1-LIKE 1		6	CSIL1 was closely related to the Arabidopsis CSI1/POM2. rice CSI1/POM2 homolog. GO:2001006: regulation of cellulose biosynthetic process.		Os06g0223800	LOC_Os06g11990.1				GO:0010330 - cellulose synthase complex, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0052324 - cell wall cellulose biosynthetic process, GO:0010089 - xylem development, GO:0051211 - anisotropic cell growth, GO:0008017 - microtubule binding	TO:0000470 - vascular tissue related trait	
22054	_		_				7	OsMIR528 target gene.	 Tolerance and resistance - Stress tolerance	Os07g0570550	LOC_Os07g38290.1				GO:0009055 - electron carrier activity, GO:0009651 - response to salt stress, GO:0046658 - anchored to plasma membrane	TO:0006001 - salt tolerance	
22055	_		_				7	LOC_Os07g37820. a candidate gene for GWi7.1. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0565500	LOC_Os07g37820.1						
22056	_		_				7	LOC_Os07g38980. a candidate gene for GWi7.2. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0577750	LOC_Os07g38980.1					TO:0002730 - grain shape	
22057	_		_				7	LOC_Os07g41000. a candidate gene for GWi7.2. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape		LOC_Os07g41000					TO:0002730 - grain shape	
22058	_		_				7	LOC_Os07g41080. a candidate gene for GWi7.2. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0602100	LOC_Os07g41080.1					TO:0002730 - grain shape	
22059	_		_				7	LOC_Os07g37150. a candidate gene for GWi7.1. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0557601	LOC_Os07g37150.1						
22060	SPARK8	OsSPARK8	SIMILAR PROTEIN TO ARK 8		SIMILAR PROTEIN TO ARK 8		7	a candidate gene for GWi7.1. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os07g0557700	LOC_Os07g37156.1				GO:0046658 - anchored to plasma membrane		
22061	_		_				3	LOC_Os03g29710.	 Seed - Morphological traits - Grain shape	Os03g0410500	LOC_Os03g29710.1					TO:0000734 - grain length	
22062	_		_				3	LOC_Os03g29730.	 Seed - Morphological traits - Grain shape	Os03g0410700	LOC_Os03g29730.1				GO:0009535 - chloroplast thylakoid membrane	TO:0000734 - grain length	
22063	HYL1	OsDRB1a, DRB1a, OsHYL1, OsDRB1-2, DRB1-2	HYPONASTIC LEAVES 1	dsRNA-binding protein 1a, Hyponastic Leaves 1, double-stranded RNA binding protein 1-2	DOUBLE-STRANDED RNA BINDING PROTEIN 1-2		11	Q0IV63. JQ675678 (indica). AtHYL1 homolog. GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0109900	LOC_Os11g01869.1, LOC_Os11g01869.2				GO:0042742 - defense response to bacterium, GO:0003725 - double-stranded RNA binding, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0031053 - primary microRNA processing, GO:0004525 - ribonuclease III activity, GO:0009611 - response to wounding, GO:0031054 - pre-microRNA processing, GO:0030422 - production of siRNA involved in RNA interference, GO:0010224 - response to UV-B, GO:0051607 - defense response to virus, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000148 - viral disease resistance, TO:0000601 - UV-B light sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009013 - portion of meristem tissue 
22064	DRB1-1	OsDRB1c, DRB1c, DRB1C, OsDRB1-1	DOUBLE-STRANDED RNA BINDING PROTEIN 1-1	dsRNA-binding protein 1c, double-stranded RNA binding protein 1-1	DOUBLE-STRANDED RNA BINDING PROTEIN 1-1		5	JQ675675 (indica). Q0DJA3. AtHYL1 homolog. GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0307400	LOC_Os05g24160.1, LOC_Os05g24160.2				GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0003725 - double-stranded RNA binding, GO:0009414 - response to water deprivation, GO:0031054 - pre-microRNA processing, GO:0031053 - primary microRNA processing, GO:0030422 - production of siRNA involved in RNA interference, GO:0004525 - ribonuclease III activity	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009013 - portion of meristem tissue 
22065	RL89	OsDRB2, DRB2, OsRL89, SRL10, OsSRL10	ROLLING LEAF 89	dsRNA-binding protein 2, DOUBLE-STRANDED RNA-BINDING2, double-stranded RNA binding protein 2, Rolling-leaf 89, SEMI-ROLLED LEAF 10	DSRNA-BINDING PROTEIN 2	rl89, srl10	10	Q9AV50. AtHYL1 homolog. TO:0006064: rolled leaf. TO:0000975: grain width. TO:0000748: leaf morphology trait. PO:0030123: panicle inflorescence. TO:0000993: cellulose content. GO:1903798: regulation of production of miRNAs involved in gene silencing by miRNA.	 Reproductive organ - panicle,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Coloration - Chlorophyll,  Vegetative organ - Culm	Os10g0480500	LOC_Os10g33970.1, LOC_Os10g33970.2				GO:0009737 - response to abscisic acid stimulus, GO:0042127 - regulation of cell proliferation, GO:0001558 - regulation of cell growth, GO:0005634 - nucleus, GO:0048366 - leaf development, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0010224 - response to UV-B, GO:0003725 - double-stranded RNA binding, GO:0070919 - production of siRNA involved in chromatin silencing by small RNA, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0009408 - response to heat, GO:0042744 - hydrogen peroxide catabolic process	TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000259 - heat tolerance, TO:0000357 - growth and development trait, TO:0000605 - hydrogen peroxide content, TO:0001015 - photosynthetic rate, TO:0000557 - secondary branch number, TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000615 - abscisic acid sensitivity, TO:0000040 - panicle length, TO:0000136 - relative water content, TO:0000449 - grain yield per plant, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000601 - UV-B light sensitivity, TO:0000734 - grain length, TO:0001018 - transpiration rate, TO:0000522 - stomatal conductance, TO:0001027 - net photosynthetic rate, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000152 - panicle number, TO:0000655 - leaf development trait, TO:0000207 - plant height	PO:0001050 - leaf development stage , PO:0009010 - seed , PO:0009073 - stigma , PO:0025034 - leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009013 - portion of meristem tissue 
22066	DRB5	OsDRB3, DRB3, OsDRB5	DOUBLE-STRANDED RNA BINDING PROTEIN 5	dsRNA-binding protein 3, double-stranded RNA binding protein 5	DOUBLE-STRANDED RNA BINDING PROTEIN 5		9	B7E321. AtHYL1 homolog.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0508500	LOC_Os09g33460.1, LOC_Os09g33460.2				GO:0042742 - defense response to bacterium, GO:0003723 - RNA binding, GO:0010224 - response to UV-B, GO:0009414 - response to water deprivation	TO:0000601 - UV-B light sensitivity, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009073 - stigma 
22067	DRB6	OsDRB4, DRB4, OsDRB6	DOUBLE-STRANDED RNA BINDING PROTEIN 6	dsRNA-binding protein 4, double-stranded RNA binding protein 6	DOUBLE-STRANDED RNA BINDING PROTEIN 6		1	Q5N8Z0. AtHYL1 homolog.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0772000	LOC_Os01g56520.1, LOC_Os01g56520.2				GO:0009611 - response to wounding, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0025281 - pollen 
22068	EMSA1	OsEMSA1	EMBRYO SAC 1				10	KX503265. PO:0030123: panicle inflorescence.	 Reproductive organ	Os10g0524300	LOC_Os10g38040.1				GO:0009553 - embryo sac development, GO:0009725 - response to hormone stimulus	TO:0000401 - plant growth hormone sensitivity, TO:0000476 - growth hormone content, TO:0000180 - spikelet fertility	PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0009072 - plant ovary 
22069	_		_				3	Os.43929 in Zhu et al. 2017. TO:0020106: Indole-3-acetic acid content.		Os03g0115800	LOC_Os03g02470.1, LOC_Os03g02470.2, LOC_Os03g02470.3					TO:0002675 - gibberellic acid content	
22070	PI57	Pi57, Pi57(t)	PYRICULARIA ORYZAE RESISTANCE 57				12	Pi57(t) was finally mapped to a 51.7-kb region flanked by two molecular markers (STS57-320 and STS57-372) on the short arm and close to the centromere of chromosome 12. Six candidate resistance genes (LOC_os12g18690, LOC_os12g18700, LOC_os12g18710, LOC_os12g18729, LOC_os12g18750, and LOC_os12g18760) were predicted in the target region according to the reference sequence of Nipponbare (Dong et al. 2017).	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000074 - blast disease	
22071	FIGNL1	OsFIGNL1	FIDGETIN-LIKE 1	OsFidgetin-like 1, Fidgetin-like 1	FIDGETIN-LIKE 1	Osfignl1	12		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0443800 	LOC_Os12g25720.1				GO:0007140 - male meiosis, GO:0048653 - anther development, GO:0005634 - nucleus, GO:0010569 - regulation of double-strand break repair via homologous recombination, GO:0051321 - meiotic cell cycle, GO:0005524 - ATP binding	TO:0000437 - male sterility	PO:0001004 - anther development stage 
22072	S40-2	OsS40-2	S40 PROTEIN 2	S40 protein 2	S40 PROTEIN 2	oss40-2, Oss40-2.1, Oss40-2.2	5	GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os05g0518800	LOC_Os05g44260.1				GO:0010150 - leaf senescence, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009646 - response to absence of light, GO:0050832 - defense response to fungus, GO:0005634 - nucleus	TO:0000249 - leaf senescence, TO:0000011 - nitrogen sensitivity, TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000074 - blast disease	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0009010 - seed 
22073	S40-3	OsS40-3	S40 PROTEIN 3	S40 protein 3	S40 PROTEIN 3		10			Os10g0413600	LOC_Os10g27350.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0009010 - seed 
22074	S40-4	OsS40-4	S40 PROTEIN 4	S40 protein 4	S40 PROTEIN 4	oss40-4, Oss40-4.1	3	GO:1901698: response to nitrogen compound.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0113900	LOC_Os03g02280.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0010150 - leaf senescence, GO:0009751 - response to salicylic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000074 - blast disease, TO:0000249 - leaf senescence, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0009010 - seed , PO:0025034 - leaf , PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0001054 - 4 leaf senescence stage 
22075	S40-5	OsS40-5	S40 PROTEIN 5	S40 protein 5	S40 PROTEIN 5	oss40-5, Oss40-5.1, Oss40-5.2	4		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os04g0542000 	LOC_Os04g45834.3, LOC_Os04g45834.2, LOC_Os04g45834.1				GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
22076	S40-6	OsS40-6	S40 PROTEIN 6	S40 protein 6	S40 PROTEIN 6	oss40-6, oss40-6.1	4	GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0413900 	LOC_Os04g33760.1				GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm	TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000011 - nitrogen sensitivity	PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009005 - root , PO:0020148 - shoot apical meristem , PO:0025034 - leaf 
22077	S40-7	OsS40-7	S40 PROTEIN 7	S40 protein 7	S40 PROTEIN 7	oss40-7, Oss40-7.1	1	GO:1900057: positive regulation of leaf senescence. TO:0000975: grain width.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape	Os01g0727500 	LOC_Os01g52730.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0010233 - phloem transport, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010150 - leaf senescence, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000466 - carbon content, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000590 - grain weight, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0009005 - root , PO:0025034 - leaf , PO:0009010 - seed , PO:0001054 - 4 leaf senescence stage , PO:0009049 - inflorescence 
22078	S40-8	OsS40-8	S40 PROTEIN 8	S40 protein 8	S40 PROTEIN 8	oss40-8, Oss40-8.1, Oss40-8.2	10		 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os10g0481000 	LOC_Os10g33990.1				GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
22079	S40-9	OsS40-9	S40 PROTEIN 9	S40 protein 9	S40 PROTEIN 9	oss40-9, Oss40-9.1	1		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0862600 	LOC_Os01g64300.1				GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0010150 - leaf senescence	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000249 - leaf senescence	PO:0009005 - root , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0020148 - shoot apical meristem , PO:0009049 - inflorescence , PO:0009010 - seed 
22080	S40-10	OsS40-10	S40 PROTEIN 10	S40 protein 10	S40 PROTEIN 10	oss40-10	1	GO:1901698: response to nitrogen compound.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0727600/Os01g0727700  	LOC_Os01g52740.1				GO:0010150 - leaf senescence	TO:0000249 - leaf senescence, TO:0000011 - nitrogen sensitivity	PO:0001054 - 4 leaf senescence stage 
22081	S40-11	OsS40-11	S40 PROTEIN 11	S40 protein 11	S40 PROTEIN 11	oss40-11, Oss40-11.1, Oss40-11.2	12		 Tolerance and resistance - Disease resistance	Os12g0156000	LOC_Os12g05980.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	PO:0025034 - leaf 
22082	S40-12	OsS40-12	S40 PROTEIN 12	S40 protein 12	S40 PROTEIN 12	oss40-12, Oss40-12.1, Oss40-12.2	11	GO:1901698: response to nitrogen compound. GO:1900057: positive regulation of leaf senescence. TO:0012012: leaf senescence duration.	 Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os11g0154300	LOC_Os11g05600.1				GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009646 - response to absence of light, GO:0010150 - leaf senescence, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0009507 - chloroplast, GO:0009753 - response to jasmonic acid stimulus	TO:0000397 - grain size, TO:0000011 - nitrogen sensitivity, TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000590 - grain weight, TO:0000249 - leaf senescence, TO:0000466 - carbon content	PO:0009010 - seed , PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf 
22083	S40-13	OsS40-13	S40 PROTEIN 13	S40 protein 13	S40 PROTEIN 13	oss40-13, Oss40-13.1, Oss40-13.2	4	GO:1900057: positive regulation of leaf senescence. TO:0012012: leaf senescence duration. TO:0000975: grain width.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os04g0520700	LOC_Os04g43990.1				GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0010150 - leaf senescence, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000466 - carbon content, TO:0000590 - grain weight, TO:0000346 - tiller number	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0009010 - seed , PO:0020148 - shoot apical meristem , PO:0009005 - root , PO:0009049 - inflorescence 
22084	S40-14	OsS40-14	S40 PROTEIN 14	S40 protein 14	S40 PROTEIN 14	oss40-14	5	GO:1900057: positive regulation of leaf senescence. TO:0012012: leaf senescence duration.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os05g0531000	LOC_Os05g45440.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010150 - leaf senescence, GO:0009414 - response to water deprivation, GO:0009646 - response to absence of light, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0010233 - phloem transport, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000466 - carbon content, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0000249 - leaf senescence, TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0001054 - 4 leaf senescence stage , PO:0009010 - seed 
22085	S40-15	OsS40-15	S40 PROTEIN 15	S40 protein 15	S40 PROTEIN 15	oss40-15	7		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Leaf	Os07g0516300	LOC_Os07g33270.1				GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress	TO:0000249 - leaf senescence, TO:0000074 - blast disease, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009010 - seed 
22086	S40-16	OsS40-16	S40 PROTEIN 16	S40 protein 16	S40 PROTEIN 16		7		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os07g0512250	LOC_Os07g32810.1				GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000249 - leaf senescence	PO:0009010 - seed , PO:0001054 - 4 leaf senescence stage 
22087	_	MT1Ld, OsMT1Ld	_	Metallothionein type 1-like protein d			12	LOC_Os12g38051.	 Tolerance and resistance - Stress tolerance	Os12g0568500 	LOC_Os12g38051.1				GO:0046872 - metal ion binding, GO:0030912 - response to deep water, GO:0010618 - aerenchyma formation	TO:0000103 - deepwater stress	PO:0009005 - root 
22088	SPL-HM143	OsHCAR, HCAR	SPOTTED LEAF-HM143	7-hydroxymethyl Chl a reductase, 7-hydroxymethyl chlorophyll a reductase	7-HYDROXYMETHYL CHL A REDUCTASE	oshcar, spl-HM143	4	Q7XTG7. GO:0090415: 7-hydroxymethyl chlorophyll a reductase activity. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os04g0320100	LOC_Os04g25400.2				GO:0009635 - response to herbicide, GO:0000302 - response to reactive oxygen species, GO:0010150 - leaf senescence, GO:0033354 - chlorophyll cycle, GO:0046872 - metal ion binding, GO:0051536 - iron-sulfur cluster binding, GO:0043067 - regulation of programmed cell death, GO:0042742 - defense response to bacterium, GO:0015996 - chlorophyll catabolic process, GO:0070265 - necrotic cell death, GO:0009507 - chloroplast, GO:0009642 - response to light intensity	TO:0002657 - oxidative stress, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000058 - herbicide sensitivity, TO:0000063 - mimic response, TO:0000496 - carotenoid content, TO:0000460 - light intensity sensitivity, TO:0000652 - leaf necrosis, TO:0000175 - bacterial blight disease resistance, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content	PO:0009047 - stem , PO:0020142 - stem internode , PO:0009005 - root , PO:0000003 - whole plant , PO:0001054 - 4 leaf senescence stage , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0020141 - stem node 
22089	_	RBP-159	_	RNA-binding RBP-159			10	LOC_Os10g17454. RNA recognition motif-containing, Gly-richprotein (mitochondria).		Os10g0321700	LOC_Os10g17454.1, LOC_Os10g17454.2, LOC_Os10g17454.3				GO:0003723 - RNA binding		
22090	_	RBP-157	_	RNA-binding RBP-157			6	LOC_Os06g11730. RNA recognition motif (RRM)-containing protein.		Os06g0220600	LOC_Os06g11730.1				GO:0003723 - RNA binding		
22091	RBP61	RBP-61, OsRBP61, OsPTB2, PTB2	RNA-BINDING PROTEIN 61 	RNA-binding RBP-61, polypyrimidine tract-binding protein 2	RNA-BINDING PROTEIN 61 	osptb2	5	RNA recognition motif (RRM), polypyrimidine tract-binding protein. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Character as QTL - Yield and productivity	Os05g0437300	LOC_Os05g36120.1, LOC_Os05g36120.2, LOC_Os05g36120.3				GO:0006397 - mRNA processing, GO:0003723 - RNA binding, GO:0017148 - negative regulation of translation, GO:0005634 - nucleus, GO:0010229 - inflorescence development	TO:0000557 - secondary branch number, TO:0000396 - grain yield, TO:0000621 - inflorescence development trait, TO:0000447 - filled grain number	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
22092	PLS2	RBP-59, OsRBP-59, OsPLS2, HeFP, OsHeFP, OsDNA2_7, DNA2_7	PREMATURE LEAF SENESCENCE 2	RNA-binding RBP-59, premature leaf senescence 2, helicase family protein, DNA Replication Helicase/Nuclease2_7, DNA replication helicase 2_7	RNA-BINDING PROTEIN 59	ospls2, ospls2a, ospls2b	3	Putative DNA helicase family protein, DNA-binding protein. Upf1-like helicase. GO:GO:1904821: chloroplast disassembly. GO:0090559: regulation of membrane permeability. GO:2000014: regulation of endosperm development. GO:1902850: microtubule cytoskeleton organization involved in mitosis.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Seed - Morphological traits - Endosperm	Os03g0586900	LOC_Os03g38990.1				GO:0051783 - regulation of nuclear division, GO:0009737 - response to abscisic acid stimulus, GO:0004386 - helicase activity, GO:0003677 - DNA binding, GO:0003779 - actin binding, GO:0010342 - cellularization of endosperm, GO:0007010 - cytoskeleton organization, GO:0031116 - positive regulation of microtubule polymerization, GO:0010150 - leaf senescence, GO:0010218 - response to far red light, GO:0005524 - ATP binding, GO:0043014 - alpha-tubulin binding, GO:0048487 - beta-tubulin binding, GO:0042542 - response to hydrogen peroxide, GO:0030276 - clathrin binding, GO:0009414 - response to water deprivation, GO:0046466 - membrane lipid catabolic process, GO:0009416 - response to light stimulus, GO:0009960 - endosperm development	TO:0000326 - leaf color, TO:0000276 - drought tolerance, TO:0000063 - mimic response, TO:0000397 - grain size, TO:0000249 - leaf senescence, TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0002667 - abscisic acid content, TO:0000455 - seed set percent, TO:0000592 - 1000-dehulled grain weight, TO:0000615 - abscisic acid sensitivity, TO:0000130 - far red light sensitivity	PO:0001054 - 4 leaf senescence stage , PO:0007633 - endosperm development stage 
22093	_	RBP-23	_	RNA-binding RBP-23			5	LOC_Os05g05320. Pentatricopeptide (PPR) repeat-containing protein (mitochondria).		Os05g0145600	LOC_Os05g05320.1, LOC_Os05g05320.2				GO:0004519 - endonuclease activity, GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0005739 - mitochondrion, GO:0043231 - intracellular membrane-bounded organelle		
22094	_	LTPL163	_	protease inhibitor/seed storage/LTP family protein 163			7	LOC_Os07g11630. Q7X7E6.		Os07g0216600	LOC_Os07g11630.1				GO:0019863 - IgE binding, GO:0005576 - extracellular region, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0045735 - nutrient reservoir activity		
22095	_		_	HR-like lesion-inducer family protein			10	LOC_Os10g30860.		Os10g0445500	LOC_Os10g30860.1				GO:0016021 - integral to membrane		
22096	BG2	OsaBG2, OsBG2	BIG GRAIN2	big grain2, big grain 2			10	LOC_Os10g25810. A3C4H3. GO:0060918: auxin transport.			LOC_Os10g25810				GO:0005886 - plasma membrane, GO:0010929 - positive regulation of auxin mediated signaling pathway, GO:0009734 - auxin mediated signaling pathway		
22097	BG3	OsaBG3, OsBG3	BIG GRAIN3	big grain3, big grain 3			2	LOC_Os02g53660.		Os02g0776600	LOC_Os02g53660.1						
22098	BG4	OsaBG4, OsBG4	BIG GRAIN4	big grain4, big grain 4			9			Os09g0443700/Os09g0443800	LOC_Os09g27160.1				GO:0009734 - auxin mediated signaling pathway		
22099	BGL1	OsaBGL1, OsBGL1	BIG GRAIN LIKE 1				3	BGIOSGA012867 (indica). a beta-glucosidase 1.	 Tolerance and resistance - Stress tolerance	Os03g0414900	LOC_Os03g30120.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
22100	PC	OsPC, PetE, OsPETE, OsCPL1, CPL1	PLASTOCYANIN	plastocyanin, Chloroplastic-Like Protein 1	PLASTOCYANIN		6	Q0DFC9. rice ortholog of AtPETE1 and AtPETE2.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0101600	LOC_Os06g01210.1				GO:0009055 - electron carrier activity, GO:0050832 - defense response to fungus, GO:0009535 - chloroplast thylakoid membrane, GO:0005507 - copper ion binding	TO:0000129 - false smut disease resistance	
22101	EIN5	OsXrn4, Xrn4, OsEIN5	ETHYLENE-INSENSITIVE PROTEIN 5	5'-3' exoribonuclease 4	5'-3' EXORIBONUCLEASE 4		3		 Tolerance and resistance - Disease resistance	Os03g0794800	LOC_Os03g58060.1, LOC_Os03g58060.2, LOC_Os03g58060.3				GO:0070370 - cellular heat acclimation, GO:0000291 - nuclear-transcribed mRNA catabolic process, exonucleolytic, GO:0051301 - cell division, GO:0008270 - zinc ion binding, GO:0003729 - mRNA binding, GO:0004534 - 5'-3' exoribonuclease activity, GO:0010087 - phloem or xylem histogenesis, GO:0005844 - polysome, GO:0040029 - regulation of gene expression, epigenetic, GO:0009826 - unidimensional cell growth, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0010494 - stress granule, GO:0000932 - cytoplasmic mRNA processing body, GO:0005737 - cytoplasm, GO:0051607 - defense response to virus, GO:0010587 - miRNA catabolic process, GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA, GO:0006397 - mRNA processing	TO:0000148 - viral disease resistance	
22102	XRN3	OsXrn3, Xrn3	5'-3' EXORIBONUCLEASE 3	5'-3' exoribonuclease 3	5'-3' EXORIBONUCLEASE 3		1	LOC_Os01g65220.		Os01g0872700	LOC_Os01g65220.1				GO:0004534 - 5'-3' exoribonuclease activity, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0006397 - mRNA processing, GO:0008270 - zinc ion binding		
22103	_	OsXrn4-L, Xrn4-L	_	OsXrn4-like, Xrn4-like, 5'-3' exoribonuclease 4-like			2	LOC_Os02g28074.		Os02g0481900	LOC_Os02g28074.1, LOC_Os02g28074.2, LOC_Os02g28074.3				GO:0004534 - 5'-3' exoribonuclease activity, GO:0006397 - mRNA processing, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding		
22104	INO80	OsINO80, CHR732, OsCHR732	CHROMATIN-REMODELING FACTOR OSINO80	Chromatin-remodeling factor OsINO80, chromatin remodeling factor 732	CHROMATIN-REMODELING FACTOR OSINO80	osino80	3	ATP-dependent chromatin-remodeling factor.	 Reproductive organ - Heading date,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0352500	LOC_Os03g22900.1				GO:0009860 - pollen tube growth, GO:0005524 - ATP binding, GO:0006281 - DNA repair, GO:0009651 - response to salt stress, GO:0051510 - regulation of unidimensional cell growth, GO:0031011 - Ino80 complex, GO:0042393 - histone binding, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0006351 - transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0006338 - chromatin remodeling, GO:0048608 - reproductive structure development, GO:0009845 - seed germination, GO:2000028 - regulation of photoperiodism, flowering, GO:0003677 - DNA binding, GO:0009846 - pollen germination, GO:0016887 - ATPase activity	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0002616 - flowering time, TO:0006001 - salt tolerance, TO:0002675 - gibberellic acid content, TO:0000207 - plant height	PO:0007057 - 0 seed germination stage 
22105	_	OsH2A.Z, H2A.Z	_	histone 2A.Z													
22106	_	HTA705	_					histone H2A.Z gene.							GO:0007623 - circadian rhythm, GO:0032922 - circadian regulation of gene expression		
22107	_	HTA713	_					histone H2A.Z gene. 									
22109	ALDH2B1  	OsALDH2B1, OsALDH2b, ALDH2b	ALDEHYDE DEHYDROGENASE 2B1	Aldehyde dehydrogenase 2B1	ALDEHYDE DEHYDROGENASE 2B1	osaldh2b, osaldh2b1	6	TO:1000022: anther morphology trait. GO:0110095: cellular detoxification of aldehyde. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:0080151: positive regulation of salicylic acid mediated signaling pathway. GO:2000022: regulation of jasmonic acid mediated signaling pathway. PO:0030123: panicle inflorescence. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Vegetative organ - Culm,  Biochemical character,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Seed - Morphological traits - Grain shape	Os06g0270900	LOC_Os06g15990.1				GO:0009556 - microsporogenesis, GO:0051321 - meiotic cell cycle, GO:0005739 - mitochondrion, GO:0048608 - reproductive structure development, GO:0009555 - pollen development, GO:0043069 - negative regulation of programmed cell death, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010229 - inflorescence development, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009742 - brassinosteroid mediated signaling, GO:0048653 - anther development, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0004029 - aldehyde dehydrogenase (NAD) activity, GO:0016491 - oxidoreductase activity	TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000180 - spikelet fertility, TO:0002688 - leaf lamina joint bending, TO:0000391 - seed size, TO:0002668 - jasmonic acid content, TO:0000476 - growth hormone content, TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000207 - plant height, TO:0002759 - grain number, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000621 - inflorescence development trait, TO:0000397 - grain size, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000437 - male sterility	PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0009049 - inflorescence , PO:0001004 - anther development stage , PO:0001083 - inflorescence development stage 
22110	ALDH2C1   	OsALDH2C1	ALDEHYDE DEHYDROGENASE 2C1	Aldehyde dehydrogenase 2C1	ALDEHYDE DEHYDROGENASE 2C1		1	LOC_Os01g40870.	 Biochemical character	Os01g0591300	LOC_Os01g40870.1				GO:0016491 - oxidoreductase activity, GO:0005829 - cytosol, GO:0004029 - aldehyde dehydrogenase (NAD) activity		
22111	ALDH3B1    	OsALDH3B1	ALDEHYDE DEHYDROGENASE 3B1	Aldehyde dehydrogenase 3B1	ALDEHYDE DEHYDROGENASE 3B1		4	LOC_Os04g45720. Variable substrate ALDH.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0540600	LOC_Os04g45720.1				GO:0006081 - cellular aldehyde metabolic process, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity, GO:0009629 - response to gravity	TO:0002693 - gravity response trait	
22112	ALDH3E2     	OsALDH3E2	ALDEHYDE DEHYDROGENASE 3E2	Aldehyde dehydrogenase 3E2	ALDEHYDE DEHYDROGENASE 3E2		2	LOC_Os02g43280. Variable substrate ALDH.	 Biochemical character	Os02g0647900	LOC_Os02g43280.1, LOC_Os02g43280.2				GO:0006081 - cellular aldehyde metabolic process, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity, GO:0016491 - oxidoreductase activity, GO:0009507 - chloroplast		
22113	ALDH3H1      	OsALDH3H1	ALDEHYDE DEHYDROGENASE 3H1	Aldehyde dehydrogenase 3H1	ALDEHYDE DEHYDROGENASE 3H1		12	LOC_Os12g07810.	 Biochemical character	Os12g0177900	LOC_Os12g07810.1				GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity, GO:0016491 - oxidoreductase activity, GO:0006081 - cellular aldehyde metabolic process, GO:0005783 - endoplasmic reticulum, GO:0016020 - membrane, GO:0005773 - vacuole		
22114	ALDH3H2    	OsALDH3H2	ALDEHYDE DEHYDROGENASE 3H2	Aldehyde dehydrogenase 3H2	ALDEHYDE DEHYDROGENASE 3H2		11	LOC_Os11g08300. Variable substrate ALDH.	 Biochemical character	Os11g0186200	LOC_Os11g08300.1, LOC_Os11g08300.2, LOC_Os11g08300.3				GO:0016491 - oxidoreductase activity, GO:0006081 - cellular aldehyde metabolic process, GO:0016021 - integral to membrane, GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity		
22115	ALDH6B2     	OsALDH6B2	ALDEHYDE DEHYDROGENASE 6B2	Aldehyde dehydrogenase 6B2, Methylmalonate-semialdehyde dehydrogenase	ALDEHYDE DEHYDROGENASE 6B2		7	LOC_Os07g09060. MM-ALDH.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0188800	LOC_Os07g09060.1, LOC_Os07g09060.2, LOC_Os07g09060.3				GO:0004491 - methylmalonate-semialdehyde dehydrogenase (acylating) activity, GO:0005739 - mitochondrion, GO:0005507 - copper ion binding, GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0006979 - response to oxidative stress	TO:0000259 - heat tolerance, TO:0000074 - blast disease	
22116	ALDH12B1      	OsALDH12B1	ALDEHYDE DEHYDROGENASE 12B1	Aldehyde dehydrogenase 12B1	ALDEHYDE DEHYDROGENASE 12B1		12	LOC_Os12g40440. P5CDH.	 Biochemical character	Os12g0596000	LOC_Os12g40440.1, LOC_Os12g40450.1				GO:0005739 - mitochondrion, GO:0033819 - lipoyl(octanoyl) transferase activity, GO:0009249 - protein lipoylation, GO:0016874 - ligase activity		
22117	_     	OsALDH12A1, ALDH12A1	_	Aldehyde dehydrogenase 12A1	ALDEHYDE DEHYDROGENASE 12B1		5	LOC_Os05g45960 (Obsolete Locus, not found in MSU Rice Genome Annotation Project Release 7 data ). P5CDH.	 Biochemical character						GO:0005739 - mitochondrion		
22118	_	IGPS	_	indole-3-glycerol phosphate synthase family protein			8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0320400	LOC_Os08g23150.1				GO:0004425 - indole-3-glycerol-phosphate synthase activity, GO:0009635 - response to herbicide, GO:0006568 - tryptophan metabolic process	TO:0000058 - herbicide sensitivity	
22119	NTMC2T1.1	OsNTMC2T1.1, OsC2DP17, C2DP17	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.1	N-terminal-TM-C2 domain protein 1.1, N-terminal trans- membrane and C2 domain protein 1.1, NTMC2 type 1.1 protein, NTMC2 family gene 1.1, C2 Domain-Containing Protein 17	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.1		2		 Tolerance and resistance - Stress tolerance	Os02g0448400	LOC_Os02g25060.1, LOC_Os02g25060.2				GO:0043231 - intracellular membrane-bounded organelle, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0046872 - metal ion binding, GO:0009409 - response to cold, GO:0008289 - lipid binding, GO:0006869 - lipid transport, GO:0012505 - endomembrane system	TO:0000303 - cold tolerance	
22120	NTMC2T1.2	OsNTMC2T1.2, OsC2DP76, C2DP76	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.2	N-terminal-TM-C2 domain protein 1.2, N-terminal trans- membrane and C2 domain protein 1.2, NTMC2 type 1.2 protein, NTMC2 family gene 1.2, C2 Domain-Containing Protein 76	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.2		9			Os09g0538800	LOC_Os09g36770.1, LOC_Os09g36770.2, LOC_Os09g36770.3				GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0006869 - lipid transport, GO:0012505 - endomembrane system, GO:0043231 - intracellular membrane-bounded organelle, GO:0005783 - endoplasmic reticulum, GO:0008289 - lipid binding		
22121	NTMC2T1.3	OsNTMC2T1.3, OsC2DP7, C2DP7	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.3	N-terminal-TM-C2 domain protein 1.3, N-terminal trans- membrane and C2 domain protein 1.3, NTMC2 type 1.3 protein, NTMC2 family gene 1.3, C2 Domain-Containing Protein 7	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.3		1			Os01g0819300	LOC_Os01g60350.1				GO:0005783 - endoplasmic reticulum, GO:0008289 - lipid binding		
22122	NTMC2T1.4	OsNTMC2T1.4, OsC2DP6, C2DP6	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.4	N-terminal-TM-C2 domain protein 1.4, N-terminal trans- membrane and C2 domain protein 1.4, NTMC2 type 1.4 protein, NTMC2 family gene 1.4, C2 Domain-Containing Protein 6	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.4		1			Os01g0819150	LOC_Os01g60340.1				GO:0008289 - lipid binding, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005783 - endoplasmic reticulum	TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity	
22123	NTMC2T1.5	OsNTMC2T1.5, OsC2DP57, C2DP57	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.5	N-terminal-TM-C2 domain protein 1.5, N-terminal trans- membrane and C2 domain protein 1.5, NTMC2 type 1.5 protein, NTMC2 family gene 1.5, C2 Domain-Containing Protein 57	N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.5		6			Os06g0685300	LOC_Os06g47130.3, LOC_Os06g47130.2, LOC_Os06g47130.1				GO:0006869 - lipid transport, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0008289 - lipid binding		
22124	NTMC2T2.1	OsNTMC2T2.1, OsC2DP37, C2DP37	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.1	N-terminal-TM-C2 domain protein 2.1, N-terminal trans- membrane and C2 domain protein 2.1, NTMC2 type 2.1 protein, NTMC2 family gene 2.1, C2 Domain-Containing Protein 37	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.1		4	PO:0030123: panicle inflorescence.		Os04g0644900	LOC_Os04g55220.1				GO:0008289 - lipid binding, GO:0005783 - endoplasmic reticulum		PO:0009049 - inflorescence 
22125	NTMC2T2.2	OsNTMC2T2.2, OsC2DP70, C2DP70	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.2	N-terminal-TM-C2 domain protein 2.2, N-terminal trans- membrane and C2 domain protein 2.2, NTMC2 type 2.2 protein, NTMC2 family gene 2.2, C2 Domain-Containing Protein 70	N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.2		8			Os08g0300200	LOC_Os08g20544.1				GO:0008289 - lipid binding, GO:0006869 - lipid transport, GO:0012505 - endomembrane system, GO:0046872 - metal ion binding, GO:0043231 - intracellular membrane-bounded organelle		
22126	NTMC2T3	OsNTMC2T3, OsC2DP1, C2DP1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 3	N-terminal-TM-C2 domain protein 3, N-terminal trans- membrane and C2 domain protein 3, NTMC2 type 3 protein, NTMC2 family gene 3, C2 Domain-Containing Protein 1	N-TERMINAL-TM-C2 DOMAIN PROTEIN 3		1			Os01g0128800	LOC_Os01g03820.1				GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0006869 - lipid transport, GO:0008289 - lipid binding		
22127	NTMC2T4.1	OsNTMC2T4.1, OsSYT-5, SYT-5, SYT5, OsSYT5, OsC2DP62, C2DP62	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.1	N-terminal-TM-C2 domain protein 4.1, N-terminal trans- membrane and C2 domain protein 4.1, NTMC2 type 4.1 protein, NTMC2 family gene 4.1, synaptotagmin-5, C2 Domain-Containing Protein 62	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.1		7		 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Vegetative organ - Root,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os07g0409100	LOC_Os07g22640.4, LOC_Os07g22640.1, LOC_Os07g22640.2, LOC_Os07g22640.3				GO:0009414 - response to water deprivation, GO:0005513 - detection of calcium ion, GO:0005783 - endoplasmic reticulum, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0016021 - integral to membrane, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006950 - response to stress, GO:0008289 - lipid binding	TO:0000181 - seed weight, TO:0000043 - root anatomy and morphology trait, TO:0001017 - water use efficiency, TO:0002667 - abscisic acid content, TO:0000421 - pollen fertility, TO:0000566 - stomatal frequency, TO:0002759 - grain number, TO:0000316 - photosynthetic ability, TO:0000227 - root length, TO:0000084 - root number, TO:0000136 - relative water content, TO:0000276 - drought tolerance, TO:0001018 - transpiration rate, TO:0002637 - leaf size, TO:0000396 - grain yield, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000540 - leaf area, TO:0000455 - seed set percent, TO:0000522 - stomatal conductance, TO:0001015 - photosynthetic rate, TO:0000346 - tiller number, TO:0006032 - panicle size	
22128	NTMC2T4.2	OsNTMC2T4.2, OsC2DP29, C2DP29	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.2	N-terminal-TM-C2 domain protein 4.2, N-terminal trans- membrane and C2 domain protein 4.2, NTMC2 type 4.2 protein, NTMC2 family gene 4.2, C2 Domain-Containing Protein 29	N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.2		3	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os03g0251600	LOC_Os03g14700.1				GO:0005783 - endoplasmic reticulum, GO:0008289 - lipid binding, GO:0006950 - response to stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009646 - response to absence of light, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0010446 - response to alkalinity, GO:0046872 - metal ion binding, GO:0006869 - lipid transport	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000460 - light intensity sensitivity, TO:0000481 - alkali sensitivity	PO:0009049 - inflorescence 
22129	NTMC2T5	OsNTMC2T5, OsC2DP26, C2DP26	N-TERMINAL-TM-C2 DOMAIN PROTEIN 5	N-terminal-TM-C2 domain protein 5, N-terminal trans-membrane and C2 domain protein 5, NTMC2 type 5 protein, NTMC2 family gene 5, C2 Domain-Containing Protein 26	N-TERMINAL-TM-C2 DOMAIN PROTEIN 5		2			Os02g0829200	LOC_Os02g58230.1, LOC_Os02g58230.2				GO:0008289 - lipid binding, GO:0006869 - lipid transport, GO:0005783 - endoplasmic reticulum		
22130	NTMC2T6.1	OsNTMC2T6.1, OsC2DP3, C2DP3	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.1	N-terminal-TM-C2 domain protein 6.1, N-terminal trans- membrane and C2 domain protein 6.1, NTMC2 type 6.1 protein, NTMC2 family gene 6.1, C2 Domain-Containing Protein 3	N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.1		1		 Tolerance and resistance - Stress tolerance	Os01g0242600	LOC_Os01g14050.1, LOC_Os01g14050.2				GO:0007623 - circadian rhythm, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0005783 - endoplasmic reticulum, GO:0009416 - response to light stimulus	TO:0000276 - drought tolerance, TO:0000075 - light sensitivity	
22131	CSIL2	OsCSIL2, OsC2DP80, C2DP80	CELLULOSE SYNTHASE INTERACTING1-LIKE 2	CSI-like 2, CELLULOSE SYNTHASE INTERACTING1-like 2, C2 Domain-Containing Protein 80	CELLULOSE SYNTHASE INTERACTING1-LIKE 2		11	PO:0030123: panicle inflorescence. GO:2001006: regulation of cellulose biosynthetic process.		Os11g0183800	LOC_Os11g08090.1				GO:0051211 - anisotropic cell growth, GO:0008017 - microtubule binding, GO:0010330 - cellulose synthase complex		PO:0009049 - inflorescence 
22132	_	CSIL3, OsCSIL3	_	CSI-like 3, CELLULOSE SYNTHASE INTERACTING1-like 3			3	LOC_Os03g19462.			LOC_Os03g19462						
22133	_		_	expressed protein gene			6	LOC_Os06g38660.		Os06g0586000	LOC_Os06g38660.1				GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity	
22134	FLZ18	OsFLZ18	FCS-LIKE ZINC FINGER PROTEIN 18	DUF581 domain- containing protein gene	FCS-LIKE ZINC FINGER PROTEIN 18		6		 Tolerance and resistance - Stress tolerance	Os06g0125200	LOC_Os06g03520.1				GO:0009413 - response to flooding, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0034059 - response to anoxia	TO:0000173 - ethylene sensitivity, TO:0000015 - oxygen sensitivity, TO:0000524 - submergence tolerance	
22135	_		_	DUF26 kinase gene			7	LOC_Os07g35810.		Os07g0542600	LOC_Os07g35810.1				GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009723 - response to ethylene stimulus	TO:0000173 - ethylene sensitivity	
22136	PI66	Pi66, Pi66(t)	PYRICULARIA ORYZAE RESISTANCE 66				3	novel Pi gene in AS20-1. Localized mapping using chromosome 3-based SSRs and Indels defined a genetic window for pi66(t), flanked by the markers F04-j2 and M19-i12. 	 Tolerance and resistance - Disease resistance						GO:0009620 - response to fungus	TO:0000074 - blast disease	
22137	YGL8		YELLOW-GREEN LEAF 8	yellow green leaf 8		ygl8	1	LOC_Os01g73450.	 Vegetative organ - Leaf,  Biochemical character	Os01g0965400	LOC_Os01g73450.1				GO:0009658 - chloroplast organization, GO:0005737 - cytoplasm, GO:0033862 - UMP kinase activity, GO:0006221 - pyrimidine nucleotide biosynthetic process	TO:0000522 - stomatal conductance, TO:0000495 - chlorophyll content, TO:0001015 - photosynthetic rate, TO:0001018 - transpiration rate, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content	PO:0025034 - leaf 
22138	HEME	OsHEME, hemE, OshemE	UROPORPHYRINOGEN DECARBOXYLASE	uroporphyrinogen decarboxylase	UROPORPHYRINOGEN DECARBOXYLASE		1	Q9AXB0. a predicted target of a predicted target of osa-miR1846a/b-5p.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0622300	LOC_Os01g43390.1, LOC_Os01g43390.2				GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0006783 - heme biosynthetic process, GO:0009409 - response to cold, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0015995 - chlorophyll biosynthetic process, GO:0004853 - uroporphyrinogen decarboxylase activity	TO:0000303 - cold tolerance	
22139	YGL138	YGL138(t), SRP54, OsSRP54, OscpSRP54a, cpSRP54a, PGL14, OsPGL1, PGL1	YELLOW-GREEN LEAF 138	yellow green leaf 138, signal recognition particle 54 kDa, chloroplast signal recognition particle 54a, pale green leaf 14, pale-green leaf 1	SIGNAL RECOGNITION PARTICLE 54 KDA 	pgl14, pgl1	11	KP119616. TO:0012004: quantum yield.	 Coloration - Chlorophyll,  Character as QTL - Plant growth activity,  Biochemical character,  Vegetative organ - Leaf	Os11g0153600	LOC_Os11g05552.1				GO:0016037 - absorption of light, GO:0003924 - GTPase activity, GO:0008312 - 7S RNA binding, GO:0015979 - photosynthesis, GO:0009507 - chloroplast, GO:0005525 - GTP binding, GO:0006614 - SRP-dependent cotranslational protein targeting to membrane, GO:0048500 - signal recognition particle, GO:0009658 - chloroplast organization	TO:0000293 - chlorophyll-a content, TO:0000456 - spikelet number, TO:0000346 - tiller number, TO:0000298 - chlorophyll ratio, TO:0000495 - chlorophyll content, TO:0000295 - chlorophyll-b content, TO:0002715 - chloroplast development trait, TO:0000207 - plant height, TO:0000496 - carotenoid content, TO:0000326 - leaf color, TO:0000180 - spikelet fertility, TO:0000316 - photosynthetic ability	PO:0009006 - shoot system , PO:0020104 - leaf sheath , PO:0025034 - leaf 
22140	PI63	Pi63, Pikahei-1(t), RGA3, RGA1-NB	PYRICULARIA ORYZAE RESISTANCE 63	Magnaporthe grisea resistance-63, Blast resistance 63, resistance gene analog 3			4	AB872116, AB872124 (japonica cultivar: Kahei). a blast resistance gene from upland rice cv. Kahei. a nucleotide-binding site and leucine-rich repeat (NBS-LRR) protein. The whole amino acid sequence of Pi63 showed 81 % identity to the counterpart in Nipponbare, RGA1-NB (Os04t0620950), which also encodes an NBS-LRR protein of 1,434 amino acids with 11 imperfect LRRs.	 Tolerance and resistance - Disease resistance	Os04g0620950	LOC_Os04g52970.1				GO:0043531 - ADP binding, GO:0050832 - defense response to fungus, GO:0009620 - response to fungus	TO:0000074 - blast disease	
22141	PI58	Pi58(t)	PYRICULARIA ORYZAE RESISTANCE 58	Magnaporthe grisea resistance-58, Blast resistance 58			12	a blast resistance gene from Myanmar rice landrace, Haoru (International Rice Research Institute genebank acc. no. IRGC33090). Pi58(t) was located between RM3103 and RM27954. Pi58(t) is primarily responsible for Haoru's broad-spectrum resistance. (Koide et al. 2013)	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22142	PI59	Pi59(t)	PYRICULARIA ORYZAE RESISTANCE 59	Magnaporthe grisea resistance-59, Blast resistance 59			6	a blast resistance gene from Myanmar rice landrace, Haoru (International Rice Research Institute genebank acc. no. IRGC33090). Pi59(t) was located between RM3370 and RM7311 (Koide et al. 2013).	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22143	PI60	Pi60(t)	PYRICULARIA ORYZAE RESISTANCE 60	Magnaporthe grisea resistance-60, Blast resistance 60			11	Pi60(t) was delimited to a 274 kb region on the short arm of chromosome 11, flanked by InDel markers K1-4 and E12 and cosegregated with InDel markers B1 and Y10. In the 274 kb region of Pi60(t), 93-11 contains six NBS-LRR genes including the two Pia/ PiCO39 alleles. Comparison of the response spectra and physical positions between the target genes and other R genes in the same chromosome regions indicated that Pi60(t) could be Pia/PiCO39 or its allele.	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22144	PI61	Pi61(t)	PYRICULARIA ORYZAE RESISTANCE 61	Magnaporthe grisea resistance-61, Blast resistance 61			11	Pi61(t) was mapped to a 200 kb region on the short arm (near the centromere) of chromosome 12, flanked by InDel markers M2 and S29 and cosegregating with InDel marker M9. Pi61(t) appears to be different from Pita, Pita-2, Pi19(t), Pi39(t) and Pi42(t) in the same R gene cluster. 	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22145	_		_	OsWRKY55-like					 Tolerance and resistance - Stress tolerance						GO:0010039 - response to iron ion	TO:0000224 - iron sensitivity	
22146	CV	OsCV	CHLOROPLAST VESICULATION				5	GO:1904821: chloroplast disassembly. GO:0080148: negative regulation of response to water deprivation. GO:0090352: regulation of nitrate assimilation.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os05g0575000	LOC_Os05g49940.1				GO:0010150 - leaf senescence, GO:0080093 - regulation of photorespiration, GO:0009414 - response to water deprivation		
22147	WLP2	OsWLP2, OsFLN1, FLN1, HSA2	WHITE LEAF AND PANICLE 2	White Leaf and Panicle 2, fructokinase-like 1		wlp2, wlp2s, wlp2w	1	a putative pfkB-type carbohydrate kinase family protein homologous to fructokinase-like 1 (AtFLN1) in Arabidopsis. a polymerase-associated protein (PAP). HSA2 in Zhang et al. 2019.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os01g0851000	LOC_Os01g63220.3, LOC_Os01g63220.2, LOC_Os01g63220.1				GO:0005634 - nucleus, GO:0045454 - cell redox homeostasis, GO:0016301 - kinase activity, GO:0043621 - protein self-association, GO:0009658 - chloroplast organization, GO:0042793 - transcription from plastid promoter, GO:0042644 - chloroplast nucleoid, GO:0009408 - response to heat, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000259 - heat tolerance, TO:0000326 - leaf color, TO:0000201 - panicle color, TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability	
22148	HSA1	OsHSA1, OsFLN2, FLN2, HSA1/OsFLN2	HEAT-STRESS SENSITIVE ALBINO 1	fructokinase-like 2, heat-stress sensitive albino 1	FRUCTOKINASE-LIKE 2	hsa1	3	WLP2 paralog. a putative pfkB-type carbohydrate kinase family protein. a polymerase-associated protein (PAP). GO:1900055: regulation of leaf senescence.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0602600	LOC_Os03g40550.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0042793 - transcription from plastid promoter, GO:0009414 - response to water deprivation, GO:0009915 - phloem loading, GO:0045454 - cell redox homeostasis, GO:0005985 - sucrose metabolic process, GO:0042644 - chloroplast nucleoid, GO:0009658 - chloroplast organization, GO:0009408 - response to heat, GO:0010150 - leaf senescence, GO:0009662 - etioplast organization, GO:0000427 - plastid-encoded plastid RNA polymerase complex, GO:0005986 - sucrose biosynthetic process, GO:0015770 - sucrose transport, GO:0030104 - water homeostasis	TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content, TO:0001027 - net photosynthetic rate, TO:0000516 - relative root length, TO:0000326 - leaf color, TO:0000249 - leaf senescence, TO:0006002 - proline content, TO:0000136 - relative water content, TO:0000259 - heat tolerance	
22149	_		_	callose synthase			1	LOC_Os01g67364.1 a protein with a glucan synthase component that is predicted to be similar to CALLOSE SYNTHASE5 isoform X1.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os01g0899387	LOC_Os01g67364.1				GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance	
22150	ALMT1 	OsALMT1	ALUMINUM-ACTIVATED MALATE TRANSPORTER 1	Aluminum-activated malate transporter 1	ALUMINUM-ACTIVATED MALATE TRANSPORTER 1		4	CAE01530.	 Biochemical character	Os04g0417000	LOC_Os04g34010.1				GO:0016021 - integral to membrane, GO:0015140 - malate transmembrane transporter activity, GO:0009617 - response to bacterium, GO:0009705 - plant-type vacuole membrane		PO:0009005 - root , PO:0025034 - leaf 
22151	ALMT2	OsALMT2	ALUMINUM-ACTIVATED MALATE TRANSPORTER 2	Aluminum-activated malate transporter 2	ALUMINUM-ACTIVATED MALATE TRANSPORTER 2		10	AAL86482.	 Biochemical character	Os10g0572100 	LOC_Os10g42180.1				GO:0016021 - integral to membrane, GO:0015140 - malate transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane		PO:0025034 - leaf 
22152	ALMT3	OsALMT3	ALUMINUM-ACTIVATED MALATE TRANSPORTER 3	Aluminum-activated malate transporter 3	ALUMINUM-ACTIVATED MALATE TRANSPORTER 3		2	BAD16367.	 Biochemical character	Os02g0730600 	LOC_Os02g49790.1				GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane, GO:0015140 - malate transmembrane transporter activity		PO:0025034 - leaf , PO:0009005 - root 
22153	ALMT4	OsALMT4	ALUMINUM-ACTIVATED MALATE TRANSPORTER 4	Aluminum-activated malate transporter 4	ALUMINUM-ACTIVATED MALATE TRANSPORTER 4		1	XP_015618041. TO:0020096: mineral and ion transport trait. TO:0020091: manganese content. TO:0006043: boron content.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0221600  	LOC_Os01g12210.1				GO:0015140 - malate transmembrane transporter activity, GO:0009733 - response to auxin stimulus, GO:0006970 - response to osmotic stress, GO:0009416 - response to light stimulus, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009642 - response to light intensity, GO:0009705 - plant-type vacuole membrane	TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0000652 - leaf necrosis, TO:0000073 - manganese sensitivity, TO:0000075 - light sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000163 - auxin sensitivity	PO:0009046 - flower , PO:0025034 - leaf , PO:0009001 - fruit , PO:0009005 - root , PO:0009006 - shoot system 
22154	ALMT5	OsALMT5	ALUMINUM-ACTIVATED MALATE TRANSPORTER 5	Aluminum-activated malate transporter 5	ALUMINUM-ACTIVATED MALATE TRANSPORTER 5		1	BAD87020.	 Biochemical character	Os01g0737500   	LOC_Os01g53570.1				GO:0015140 - malate transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009705 - plant-type vacuole membrane		
22155	ALMT6	OsALMT6	ALUMINUM-ACTIVATED MALATE TRANSPORTER 6	Aluminum-activated malate transporter 6	ALUMINUM-ACTIVATED MALATE TRANSPORTER 6		6	BAD54395.	 Biochemical character	Os06g0268800   	LOC_Os06g15779.1				GO:0016021 - integral to membrane, GO:0015140 - malate transmembrane transporter activity, GO:0009705 - plant-type vacuole membrane		
22156	PAAB1-1	OsALMT7, ALMT7	PANICLE APICAL ABORTION 1-1	Aluminum-activated malate transporter 7, panicle apical abortion1-1	ALUMINUM-ACTIVATED MALATE TRANSPORTER 7	paab1-1, paab1, paab1-t1, paab1-t2	2	BAD29455. TO:0000854: spikelet floret size. TO:0000847: panicle inflorescence morphology trait.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Biochemical character	Os02g0673100   	LOC_Os02g45160.1				GO:0015743 - malate transport, GO:0015140 - malate transmembrane transporter activity, GO:0010229 - inflorescence development, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0016021 - integral to membrane, GO:0012501 - programmed cell death, GO:0005886 - plasma membrane, GO:0009705 - plant-type vacuole membrane	TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000040 - panicle length, TO:0000396 - grain yield, TO:0000657 - spikelet anatomy and morphology trait, TO:0000605 - hydrogen peroxide content, TO:0000621 - inflorescence development trait, TO:0000590 - grain weight, TO:0000397 - grain size	PO:0009015 - portion of vascular tissue , PO:0005028 - inflorescence vascular system , PO:0009005 - root , PO:0001083 - inflorescence development stage 
22157	ALMT8	OsALMT8	ALUMINUM-ACTIVATED MALATE TRANSPORTER 8	Aluminum-activated malate transporter 8	ALUMINUM-ACTIVATED MALATE TRANSPORTER 8		4	CAE02072.	 Biochemical character	Os04g0567200   	LOC_Os04g47930.1				GO:0009705 - plant-type vacuole membrane, GO:0016021 - integral to membrane, GO:0015140 - malate transmembrane transporter activity		
22158	ALMT9	OsALMT9, OsALMT2	ALUMINUM-ACTIVATED MALATE TRANSPORTER 9	Aluminum-activated malate transporter 9	ALUMINUM-ACTIVATED MALATE TRANSPORTER 9		6	BAD32958. OsALMT2 in Ren et al. 2020.	 Biochemical character	Os06g0331900   	LOC_Os06g22600.1				GO:0009705 - plant-type vacuole membrane, GO:0015140 - malate transmembrane transporter activity, GO:0016021 - integral to membrane		PO:0009005 - root 
22159	GLIP1	OsGLIP1	GDSL LIPASE 1	GDSL lipase 1	GDSL LIPASE 1		6	GO:1900425: negative regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0129600 	LOC_Os06g03890.1, LOC_Os06g03900.1				GO:0005811 - lipid particle, GO:0005789 - endoplasmic reticulum membrane, GO:0031348 - negative regulation of defense response, GO:0050832 - defense response to fungus, GO:0055088 - lipid homeostasis, GO:0019216 - regulation of lipid metabolic process, GO:0042742 - defense response to bacterium, GO:0016298 - lipase activity, GO:0009751 - response to salicylic acid stimulus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0009037 - lemma , PO:0020104 - leaf sheath 
22160	NOG1	OsNOG1	NUMBER OF GRAINS 1			nog1	1	GO:0080167: response to larrikin. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os01g0752200	LOC_Os01g54860.1				GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity, GO:0080140 - regulation of jasmonic acid metabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0004300 - enoyl-CoA hydratase activity, GO:0031998 - regulation of fatty acid beta-oxidation	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000396 - grain yield, TO:0000449 - grain yield per plant, TO:0000447 - filled grain number, TO:0002759 - grain number	PO:0025034 - leaf 
22161	TSV3	OsObgC2, ObgC2, TSV3/OsObgC2	THERMO-SENSITIVE VIRESCENT 3	thermo-sensitive virescent 3, Spo0B-associated GTP-binding protein C2, Obg protein C2	OBG PROTEIN C2	tsv3	3	Q851Q6.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0799700	LOC_Os03g58540.3, LOC_Os03g58540.1, LOC_Os03g58540.2				GO:0009658 - chloroplast organization, GO:0005525 - GTP binding, GO:0009409 - response to cold, GO:0009507 - chloroplast	TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009006 - shoot system 
22162	OBGC1	OsObgC1, ObgC1	OBG PROTEIN C1	Spo0B-associated GTP-binding protein C1, Obg protein C1	OBG PROTEIN C1	obgc1-d1, obgc1-d2, obgc1-t	7	LOC_Os07g47300. Q0D3S3. TO:0006060: leaf chlorosis. GO:1901259: chloroplast rRNA processing.	 Coloration - Chlorophyll,  Vegetative organ - Leaf	Os07g0669200	LOC_Os07g47300.1				GO:0009507 - chloroplast, GO:0042254 - ribosome biogenesis, GO:0000287 - magnesium ion binding, GO:0005525 - GTP binding, GO:0009658 - chloroplast organization, GO:0003924 - GTPase activity	TO:0000326 - leaf color	
22163	OBGM	OsObgM, ObgM	OBG PROTEIN M	Spo0B-associated GTP-binding protein M, Obg protein M	OBG PROTEIN M		11	LOC_Os11g47800. Q2QZ37.		Os11g0704300	LOC_Os11g47800.1				GO:0005739 - mitochondrion, GO:0005525 - GTP binding		
22164	MIR396D	miR396d, osa-miR396d, osa-MIR396d, OsmiR396d	MICRORNA396D	MICRORNA396d, osa-miRNA396d	_			OsmiR396d target genes: OsGRF6 and OsGRF10. OsMIR396d Is a Direct Target of OsBZR1. (Tang et al. 2018) GO:1900459: positive regulation of brassinosteroid mediated signaling pathway.	 Vegetative organ - Leaf,  Other,  Vegetative organ - Culm						GO:0009741 - response to brassinosteroid stimulus, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0051511 - negative regulation of unidimensional cell growth, GO:0051782 - negative regulation of cell division, GO:0009733 - response to auxin stimulus	TO:0000145 - internode length, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000207 - plant height, TO:0000206 - leaf angle	PO:0025034 - leaf 
22165	_	OsGATA3, GATA3	_	GATA transcription factor 3, GATA factor 3	_		2	LOC_Os02g56250.1	 Other	Os02g0806300	LOC_Os02g56250.1				GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
22166	_	OsGATA21, GATA21, OsGATA21a, OsGATA21b, DLN117, OSDLN117	_	GATA transcription factor 21, GATA factor 21, DLN repressor 117, DLN motif protein 117	_		4	LOC_Os04g46020.1(OsGATA21a), LOC_Os04g46020.2 (OsGATA21b). GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085: RNA polymerase II transcription factor binding. GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0544500	LOC_Os04g46020.2, LOC_Os04g46020.1				GO:0008270 - zinc ion binding, GO:0003682 - chromatin binding, GO:0030154 - cell differentiation, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
22167	RPL23A	OsRPL23A	RIBOSOMAL PROTEIN L23A	ribosomal protein L23A, ribosomal protein large subunit 23A	RIBOSOMAL PROTEIN L23A		1	LOC_Os01g24690.1	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0348700	LOC_Os01g24690.1, LOC_Os01g24690.2, LOC_Os01g24690.3				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0003723 - RNA binding, GO:0000027 - ribosomal large subunit assembly, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium	TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity	PO:0009089 - endosperm , PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009005 - root , PO:0020031 - radicle , PO:0020032 - plumule , PO:0009046 - flower 
22168	_	RPS4	_	ribosomal protein S4, ribosomal protein small subunit 4	_		1	LOC_Os01g25610.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os01g0358400	LOC_Os01g25610.1				GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0019843 - rRNA binding, GO:0022627 - cytosolic small ribosomal subunit, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
22169	_	RPS5	_	ribosomal protein S5, ribosomal protein small subunit 5	_		1	LOC_Os01g01060.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os01g0100700	LOC_Os01g01060.1				GO:0003729 - mRNA binding, GO:0000028 - ribosomal small subunit assembly, GO:0042542 - response to hydrogen peroxide, GO:0006412 - translation, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0022627 - cytosolic small ribosomal subunit, GO:0050832 - defense response to fungus, GO:0019843 - rRNA binding	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
22170	_	RPS6, OsRPS6	_	ribosomal protein S6, ribosomal protein small subunit 6	_		1	LOC_Os01g12090.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0220300	LOC_Os01g12090.1				GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0070181 - SSU rRNA binding, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance	
22171	_	RPS7, OsRPS7	_	ribosomal protein S7, ribosomal protein small subunit 7	_		2	LOC_Os02g21900.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os02g0324500	LOC_Os02g21900.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006412 - translation, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0003735 - structural constituent of ribosome, GO:0005840 - ribosome	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
22172	RPS7A	RPS7a, OsRPS7a	RIBOSOMAL PROTEIN S7A	ribosomal protein S7a, ribosomal protein small subunit 7a	RIBOSOMAL PROTEIN S7A		3	LOC_Os03g18570. GO:0002181: cytoplasmic translation.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os03g0297100	LOC_Os03g18570.1				GO:0042274 - ribosomal small subunit biogenesis, GO:0022627 - cytosolic small ribosomal subunit, GO:0030686 - 90S preribosome, GO:0032040 - small-subunit processome, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006364 - rRNA processing, GO:0003735 - structural constituent of ribosome	TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
22173	_	RPS9, OsRPS9	_	ribosomal protein S9, ribosomal protein small subunit 9	_		7	LOC_Os07g43510.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Other	Os07g0628400	LOC_Os07g43510.1				GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0003723 - RNA binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
22174	RPS9-2	OsRPS9-2	RIBOSOMAL PROTEIN S9-2	ribosomal protein S9-2, ribosomal protein small subunit 9-2	RIBOSOMAL PROTEIN S9-2		3	LOC_Os03g05980.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0154700	LOC_Os03g05980.1, LOC_Os03g05980.2				GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0006412 - translation, GO:0019843 - rRNA binding, GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0045903 - positive regulation of translational fidelity	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
22175	_	RPS10, OsRPS10	_	ribosomal protein S10, ribosomal protein small subunit 10	_		1	LOC_Os01g73160.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os01g0962600	LOC_Os01g73160.1				GO:0003723 - RNA binding, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0022627 - cytosolic small ribosomal subunit, GO:0000028 - ribosomal small subunit assembly, GO:0003735 - structural constituent of ribosome	TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance	
22176	RPS10A	RPS10a, OsRPS10a	RIBOSOMAL PROTEIN S10A	ribosomal protein S10a, ribosomal protein small subunit 10a	RIBOSOMAL PROTEIN S10A		2	LOC_Os02g34460. P0DKK8.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0549600	LOC_Os02g34460.2				GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005840 - ribosome, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance	
22177	_	RPS13, OsRPS13	_	ribosomal protein S13, ribosomal protein small subunit 13	_		7	LOC_Os07g38540.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0572900	LOC_Os07g38540.1				GO:0003735 - structural constituent of ribosome, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005730 - nucleolus, GO:0009737 - response to abscisic acid stimulus, GO:0070181 - SSU rRNA binding	TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
22178	RPS15A	RPS15a, OsRPS15a	RIBOSOMAL PROTEIN S15A	ribosomal protein S15a, ribosomal protein small subunit 15a	RIBOSOMAL PROTEIN S15A		2	LOC_Os02g27760.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os02g0478600	LOC_Os02g27760.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0022627 - cytosolic small ribosomal subunit, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	
22179	RPS17	OsRPS17	RIBOSOMAL PROTEIN S17	ribosomal protein S17, ribosomal protein small subunit 17	RIBOSOMAL PROTEIN S17		3	LOC_Os03g01900.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os03g0109500	LOC_Os03g01900.1				GO:0009737 - response to abscisic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0000028 - ribosomal small subunit assembly, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity	
22180	_	RPS18, OsRPS18	_	ribosomal protein S18, ribosomal protein small subunit 18	_		3	LOC_Os03g58050.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os03g0794700	LOC_Os03g58050.1				GO:0015935 - small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0009651 - response to salt stress, GO:0042254 - ribosome biogenesis, GO:0042542 - response to hydrogen peroxide, GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance	
22181	RPS18A	RPS18a, OsRPS18a	RIBOSOMAL PROTEIN S18A	ribosomal protein S18a, ribosomal protein small subunit 18a	RIBOSOMAL PROTEIN S18A		7	LOC_Os07g07719.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os07g0173700	LOC_Os07g07719.1				GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0015935 - small ribosomal subunit, GO:0006412 - translation, GO:0005829 - cytosol, GO:0042542 - response to hydrogen peroxide, GO:0042254 - ribosome biogenesis	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance	
22182	RPS18B	RPS18b	RIBOSOMAL PROTEIN S18B	ribosomal protein S18b	RIBOSOMAL PROTEIN S18B		7	LOC_Os07g07770.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0174200	LOC_Os07g07770.1				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005840 - ribosome	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance	
22183	_	RPS21, OsRPS21	_	ribosomal protein S21, ribosomal protein small subunit 21	_		3	LOC_Os03g46490.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os03g0667800	LOC_Os03g46490.1				GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0009737 - response to abscisic acid stimulus, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
22184	RPS23A	RPS23a, OsRPS23a	RIBOSOMAL PROTEIN S23A	ribosomal protein S23a, ribosomal protein small subunit 23a	RIBOSOMAL PROTEIN S23A		10	LOC_Os10g20910.	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os10g0350001	LOC_Os10g20910.1				GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0050832 - defense response to fungus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	
22185	_	RPS25, OsRPS25	_	ribosomal protein S25, ribosomal protein small subunit 25	_		8	LOC_Os08g44480.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0559200	LOC_Os08g44480.1, LOC_Os08g44480.3				GO:0050832 - defense response to fungus, GO:0005840 - ribosome, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
22186	RPS26	OsRPS26	RIBOSOMAL PROTEIN S26	ribosomal protein S26, ribosomal protein small subunit 26	RIBOSOMAL PROTEIN S26		1	LOC_Os01g60790. P49216.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os01g0823300	LOC_Os01g60790.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0042542 - response to hydrogen peroxide, GO:0003729 - mRNA binding, GO:0022627 - cytosolic small ribosomal subunit, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0006412 - translation	TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
22187	RPS27	OsRPS27	RIBOSOMAL PROTEIN S27	ribosomal protein S27, ribosomal protein small subunit 27	RIBOSOMAL PROTEIN S27		4		 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0346100	LOC_Os04g27860.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0000028 - ribosomal small subunit assembly, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0042742 - defense response to bacterium	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance	
22188	RPS29	OsRPS29	RIBOSOMAL PROTEIN S29	ribosomal protein S29, ribosomal protein small subunit 29	RIBOSOMAL PROTEIN S29		3	LOC_Os03g56241.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os03g0773150	LOC_Os03g56241.1				GO:0006412 - translation, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0003735 - structural constituent of ribosome, GO:0022627 - cytosolic small ribosomal subunit	TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
22189	RPS30	OsRPS30	RIBOSOMAL PROTEIN S30	ribosomal protein S30, ribosomal protein small subunit 30	RIBOSOMAL PROTEIN S30		2		 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0804100	LOC_Os02g56014.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0050832 - defense response to fungus, GO:0003735 - structural constituent of ribosome, GO:0009737 - response to abscisic acid stimulus, GO:0005840 - ribosome, GO:0006412 - translation	TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
22190	RPL4	OsRPL4	RIBOSOMAL PROTEIN L4	ribosomal protein L4, ribosomal protein large subunit 4	RIBOSOMAL PROTEIN L4		3	GO:0002181: cytoplasmic translation.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0796501	LOC_Os03g58204.1, LOC_Os03g58204.2				GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009046 - flower , PO:0020103 - flag leaf , PO:0020031 - radicle , PO:0009005 - root , PO:0020032 - plumule , PO:0009006 - shoot system 
22191	_	OsRPL5, RPL5	_	ribosomal protein L5, ribosomal protein large subunit 5	_		5	LOC_Os05g11710.1 Q0DK10. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os05g0207300	LOC_Os05g11710.1				GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0006412 - translation, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0003723 - RNA binding, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0019843 - rRNA binding, GO:0005634 - nucleus, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0000027 - ribosomal large subunit assembly	TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance	PO:0020103 - flag leaf , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0020032 - plumule , PO:0020031 - radicle , PO:0009006 - shoot system , PO:0009005 - root , PO:0000003 - whole plant 
22192	RPL6	OsRPL6	RIBOSOMAL PROTEIN L6	ribosomal protein L6, ribosomal protein large subunit 6	RIBOSOMAL PROTEIN L6		4	GO:0002181: cytoplasmic translation.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os04g0473400	LOC_Os04g39700.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0009751 - response to salicylic acid stimulus, GO:0000027 - ribosomal large subunit assembly, GO:0042742 - defense response to bacterium, GO:0003723 - RNA binding, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0003735 - structural constituent of ribosome, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity	PO:0020103 - flag leaf , PO:0020031 - radicle , PO:0009006 - shoot system , PO:0009005 - root , PO:0020032 - plumule 
22193	_	OsRPL7/L12, RPL7/L12, RPL7, RPL12, OsRPL7, OsRPL12	_	ribosomal protein L7/L12, ribosomal protein large subunit 7/12	_		2	LOC_Os02g10540.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os02g0198900	LOC_Os02g10540.1				GO:0009751 - response to salicylic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0005762 - mitochondrial large ribosomal subunit, GO:0006839 - mitochondrial transport, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0032543 - mitochondrial translation, GO:0016021 - integral to membrane, GO:0009753 - response to jasmonic acid stimulus	TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0009089 - endosperm , PO:0009005 - root , PO:0009006 - shoot system , PO:0020032 - plumule , PO:0009009 - plant embryo 
22194	RPL13A	OsRPL13a, RPL13a	RIBOSOMAL PROTEIN L13A	ribosomal protein L13a, ribosomal protein large subunit 13a	RIBOSOMAL PROTEIN L13A		7	LOC_Os07g01870.1 PO:0030117: spike inflorescence.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0109500	LOC_Os07g01870.1, LOC_Os07g01870.2				GO:0042542 - response to hydrogen peroxide, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0003729 - mRNA binding, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit	TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	PO:0009046 - flower , PO:0020032 - plumule , PO:0020031 - radicle , PO:0009005 - root , PO:0009006 - shoot system , PO:0020103 - flag leaf 
22195	_	OsRPL14, RPL14	_	ribosomal protein L14, ribosomal protein large subunit 14			2	PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Other	Os02g0622300	LOC_Os02g40880.1, LOC_Os02g40880.2				GO:0042742 - defense response to bacterium, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042273 - ribosomal large subunit biogenesis, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0020032 - plumule , PO:0009089 - endosperm , PO:0009006 - shoot system , PO:0009046 - flower , PO:0020103 - flag leaf , PO:0009005 - root 
22196	RPL15	OsRPL15	RIBOSOMAL PROTEIN L15	ribosomal protein L15, ribosomal protein large subunit 15	RIBOSOMAL PROTEIN L15		3	LOC_Os03g40180.1 GO:0002181: cytoplasmic translation.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0598800	LOC_Os03g40180.1, LOC_Os03g40180.2				GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0006412 - translation, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0022625 - cytosolic large ribosomal subunit	TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root 
22197	RPL21.2	OsRPL21.2	RIBOSOMAL PROTEIN L21.2	ribosomal protein L21.2, ribosomal protein large subunit 21.2	RIBOSOMAL PROTEIN L21.2		10	LOC_Os10g32820.1 PO:0030117: spike inflorescence.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os10g0465800	LOC_Os10g32820.1				GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	PO:0020103 - flag leaf , PO:0009006 - shoot system , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009005 - root 
22198	RPL26.1	OsRPL26.1	RIBOSOMAL PROTEIN L26.1	ribosomal protein L26.1, ribosomal protein large subunit 26.1	RIBOSOMAL PROTEIN L26.1		11	LOC_Os11g05370.1 GO:0002181: cytoplasmic translation. PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Insect resistance	Os11g0151300	LOC_Os11g05370.1				GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0003723 - RNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0042273 - ribosomal large subunit biogenesis	TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	PO:0009046 - flower , PO:0025034 - leaf , PO:0009006 - shoot system 
22199	_	OsRPL27.3, RPL27.3	_	ribosomal protein L27.3, ribosomal protein large subunit 27.3			2	LOC_Os02g18380.1	 Tolerance and resistance - Disease resistance,  Other,  Tolerance and resistance - Stress tolerance	Os02g0284600	LOC_Os02g18380.1				GO:0042742 - defense response to bacterium, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0009414 - response to water deprivation	TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009006 - shoot system , PO:0009046 - flower , PO:0009089 - endosperm 
22200	RPL28	OsRPL28	RIBOSOMAL PROTEIN L28	ribosomal protein L28, ribosomal protein large subunit 28	RIBOSOMAL PROTEIN L28		7	LOC_Os07g36090.3	 Other,  Tolerance and resistance - Stress tolerance	Os07g0544900	LOC_Os07g36090.1, LOC_Os07g36090.2, LOC_Os07g36090.3				GO:0042542 - response to hydrogen peroxide, GO:0005762 - mitochondrial large ribosomal subunit, GO:0009751 - response to salicylic acid stimulus, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0006412 - translation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	
22201	RPL29	OsRPL29	RIBOSOMAL PROTEIN L29	ribosomal protein L29, ribosomal protein large subunit 29	RIBOSOMAL PROTEIN L29		6	LOC_Os06g51530.1	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0732000	LOC_Os06g51530.1				GO:0009409 - response to cold, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0003729 - mRNA binding, GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA), GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus, GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome	TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0009046 - flower 
22202	RPL30E	OsRPL30e, RPL30e	RIBOSOMAL PROTEIN L30E	ribosomal protein L30e, ribosomal protein large subunit 30e	RIBOSOMAL PROTEIN L30E		7		 Tolerance and resistance - Stress tolerance,  Other	Os07g0636400	LOC_Os07g44230.1, LOC_Os07g44230.2				GO:0009408 - response to heat, GO:0005655 - nucleolar ribonuclease P complex, GO:0042542 - response to hydrogen peroxide, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance	PO:0009006 - shoot system , PO:0009005 - root 
22203	RPL34	OsRPL34	RIBOSOMAL PROTEIN L34	ribosomal protein L34, ribosomal protein large subunit 34	RIBOSOMAL PROTEIN L34		9	LOC_Os09g24690.1 PO:0030117: spike inflorescence.	 Other,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0413500	LOC_Os09g24690.1				GO:0005840 - ribosome, GO:0009753 - response to jasmonic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0006412 - translation	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	PO:0009089 - endosperm , PO:0009046 - flower , PO:0020103 - flag leaf , PO:0009005 - root , PO:0009006 - shoot system , PO:0020031 - radicle , PO:0009009 - plant embryo 
22204	RPL35A.3	OsRPL35a.3, RPL35a.3	RIBOSOMAL PROTEIN L35A.3	ribosomal protein L35a.3, ribosomal protein large subunit 35a.3	RIBOSOMAL PROTEIN L35A.3		5	LOC_Os05g48310.1 GO:0002181: cytoplasmic translation. PO:0030117: spike inflorescence.	 Other,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0556900	LOC_Os05g48310.1, LOC_Os05g48310.2				GO:0009751 - response to salicylic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0042273 - ribosomal large subunit biogenesis, GO:0009409 - response to cold, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0003735 - structural constituent of ribosome	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009009 - plant embryo , PO:0020103 - flag leaf , PO:0009005 - root , PO:0009006 - shoot system , PO:0020031 - radicle 
22205	RPL36.2	OsRPL36.2	RIBOSOMAL PROTEIN L36.2	ribosomal protein  L36.2, ribosomal protein large subunit 36.2	RIBOSOMAL PROTEIN L36.2		1	GO:0002181: cytoplasmic translation. PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os01g0840700	LOC_Os01g62350.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009753 - response to jasmonic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat	TO:0002657 - oxidative stress, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0009006 - shoot system , PO:0025034 - leaf 
22206	RPL37	OsRPL37	RIBOSOMAL PROTEIN L37	ribosomal protein  L37, ribosomal protein large subunit 37	RIBOSOMAL PROTEIN L37		2	LOC_Os02g56990.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other,  Tolerance and resistance - Disease resistance	Os02g0815000	LOC_Os02g56990.1				GO:0006412 - translation, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0042742 - defense response to bacterium, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0005840 - ribosome	TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0009006 - shoot system , PO:0009005 - root 
22207	RPL38	OsRPL38, RPL38A, OsRPL38A	RIBOSOMAL PROTEIN L38	ribosomal protein  L38, ribosomal protein large subunit 38	RIBOSOMAL PROTEIN L38		11	PO:0030117: spike inflorescence. RPL38A in Bakshi et al. 2023.	 Other,  Tolerance and resistance - Stress tolerance	Os11g0433900	LOC_Os11g24610.1				GO:0022618 - ribonucleoprotein complex assembly, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0003735 - structural constituent of ribosome, GO:0003723 - RNA binding, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0006412 - translation	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0009005 - root , PO:0009009 - plant embryo , PO:0020031 - radicle 
22208	RPL44	OsRPL44	RIBOSOMAL PROTEIN L44	ribosomal protein  L44, ribosomal protein large subunit 44	RIBOSOMAL PROTEIN L44		7	LOC_Os07g33898.1 PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance,  Other	Os07g0523300	LOC_Os07g33898.1				GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0006412 - translation, GO:0009751 - response to salicylic acid stimulus, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0022625 - cytosolic large ribosomal subunit, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress	PO:0020103 - flag leaf , PO:0009089 - endosperm , PO:0020031 - radicle , PO:0009005 - root , PO:0009006 - shoot system 
22209	RPL51	OsRPL51	RIBOSOMAL PROTEIN L51	ribosomal protein  L51, ribosomal protein large subunit 51	RIBOSOMAL PROTEIN L51		3	PO:0030117: spike inflorescence.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0207250	LOC_Os03g10930.1, LOC_Os03g10930.2				GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0003735 - structural constituent of ribosome, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005762 - mitochondrial large ribosomal subunit	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	PO:0009006 - shoot system , PO:0020031 - radicle , PO:0009005 - root 
22210	SPLHM47	splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1	SPOTTED-LEAF HM47	spotted-leaf HM47, OsPELOTA, PELOTA, lesion mimic leaf 1		pelota, lml1, lml1-1, lml1-2, lml1-3	4	a spotted-leaf mutant pelota. a paralogue to eukaryotic release factor 1 (eRF1). GO:0070966: nuclear-transcribed mRNA catabolic process, no-go decay. GO:1900425: negative regulation of defense response to bacterium. GO:2000031: regulation of salicylic acid mediated signaling pathway. PO:0030123: panicle inflorescence. GO:2000280: regulation of root development. TO:0020103: adventitious root length. TO:0000975: grain width. TO:1000022: anther morphology trait. PO:0030123: panicle inflorescence. GO:1904821: chloroplast disassembly.	 Tolerance and resistance - Lesion mimic,  Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Root,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os04g0659900	LOC_Os04g56480.1, LOC_Os04g56480.2, LOC_Os04g56480.3				GO:0070651 - nonfunctional rRNA decay, GO:0043022 - ribosome binding, GO:0005737 - cytoplasm, GO:0009648 - photoperiodism, GO:0042742 - defense response to bacterium, GO:0006412 - translation, GO:0009266 - response to temperature stimulus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009416 - response to light stimulus, GO:0010150 - leaf senescence, GO:0060548 - negative regulation of cell death, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0071025 - RNA surveillance, GO:0010337 - regulation of salicylic acid metabolic process, GO:0048364 - root development, GO:0005739 - mitochondrion, GO:0032790 - ribosome disassembly, GO:0009555 - pollen development, GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay, GO:0048366 - leaf development	TO:0000447 - filled grain number, TO:0000421 - pollen fertility, TO:0000040 - panicle length, TO:0002668 - jasmonic acid content, TO:0001012 - lateral root length, TO:0000227 - root length, TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content, TO:0000734 - grain length, TO:0000339 - stem thickness, TO:0000592 - 1000-dehulled grain weight, TO:0000249 - leaf senescence, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000075 - light sensitivity, TO:0000432 - temperature response trait, TO:0000180 - spikelet fertility, TO:0000175 - bacterial blight disease resistance, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000187 - anther color, TO:0000326 - leaf color, TO:0000074 - blast disease, TO:0000145 - internode length	PO:0025281 - pollen , PO:0009066 - anther , PO:0009005 - root , PO:0009053 - peduncle , PO:0001007 - pollen development stage , PO:0007520 - root development stage , PO:0020138 - leaf lamina vein , PO:0001050 - leaf development stage , PO:0009039 - glume , PO:0009073 - stigma , PO:0000026 - primary root tip , PO:0000025 - root tip , PO:0025034 - leaf , PO:0000293 - guard cell , PO:0020106 - leaf sheath auricle , PO:0020105 - ligule , PO:0009047 - stem , PO:0009037 - lemma , PO:0020104 - leaf sheath 
22211	UGT707A5	OsUGT707A5	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A5	UDP-dependent glycosyltransferase 707A5, anthocyanidin 3-O-glucosyltransferase 2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A5		7		 Coloration - Anthocyanin,  Biochemical character	Os07g0503300 	LOC_Os07g32010.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0009813 - flavonoid biosynthetic process, GO:0043231 - intracellular membrane-bounded organelle		
22212	UGT707A4	OsUGT707A4	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A4	UDP-dependent glycosyltransferase 707A4	UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A4		7	LOC_Os07g31960.	 Biochemical character	Os07g0502900 	LOC_Os07g31960.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process		
22213	UGT706E1	OsUGT706E1, OsUGT1, UGT1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E1	UDP-dependent glycosyltransferase 706E1, URIDINE DIPHOSPHATE GLYCOSYLTRANSFERASE 1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E1		1		 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0734600 	LOC_Os01g53330.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0009651 - response to salt stress, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity	TO:0006001 - salt tolerance, TO:0000397 - grain size	
22214	UGT706F1	OsUGT706F1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706F1	UDP-dependent glycosyltransferase 706F1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706F1		1	LOC_Os01g53350.	 Biochemical character	Os01g0734800 	LOC_Os01g53350.1, LOC_Os01g53350.2				GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22215	UGT88C3	OsUGT88C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C3	UDP-dependent glycosyltransferase 88C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C3		1		 Vegetative organ - Leaf,  Biochemical character,  Coloration - Anthocyanin	Os01g0735300 	LOC_Os01g53370.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0009718 - anthocyanin biosynthetic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0005634 - nucleus, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0005783 - endoplasmic reticulum	TO:0000326 - leaf color, TO:0000071 - anthocyanin content	PO:0009009 - plant embryo , PO:0009030 - carpel , PO:0025034 - leaf 
22216	UGT88C2	OsUGT88C2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C2	UDP-dependent glycosyltransferase 88C2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C2		1	LOC_Os01g53390.	 Biochemical character	Os01g0735500 	LOC_Os01g53390.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0016021 - integral to membrane, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22217	UGT706B1	OsUGT706B1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706B1	UDP-dependent glycosyltransferase 706B1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706B1		1	LOC_Os01g53420.	 Biochemical character	Os01g0735900 	LOC_Os01g53420.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process		
22218	UGT705A1	OsUGT705A1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A1	UDP-dependent glycosyltransferase 705A1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A1		5	LOC_Os05g42020.	 Biochemical character	Os05g0499600 	LOC_Os05g42020.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0043231 - intracellular membrane-bounded organelle, GO:0080043 - quercetin 3-O-glucosyltransferase activity		
22219	UGT705A2	OsUGT705A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A2	UDP-dependent glycosyltransferase 705A2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A2		5	LOC_Os05g42060.	 Biochemical character	Os05g0500000 	LOC_Os05g42060.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008152 - metabolic process		
22220	UGT706D3	OsUGT706D3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D3	UDP-dependent glycosyltransferase 706D3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D3		5	LOC_Os05g45080.	 Biochemical character	Os05g0526800 	LOC_Os05g45080.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22221	UGT706D2	OsUGT706D2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D2	UDP-dependent glycosyltransferase 706D2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D2		5	LOC_Os05g45090.	 Biochemical character	Os05g0526900 	LOC_Os05g45090.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity		
22222	UGT706C3	OsUGT706C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C3	UDP-dependent glycosyltransferase 706C3	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C3		5	LOC_Os05g45100.	 Biochemical character	Os05g0527000 	LOC_Os05g45100.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
22223	LTG5	OsUGT706C4, UGT706C4, OsLTG5	LOW TEMPERATURE GROWTH 5	UDP-dependent glycosyltransferase 706C4, Low Temperature Growth 5	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C4		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0527100 	LOC_Os05g45110.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0009409 - response to cold, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity	TO:0000303 - cold tolerance	
22224	UGT706J1	OsUGT706J1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706J1	UDP-dependent glycosyltransferase 706J1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706J1		5	LOC_Os05g45150.	 Biochemical character	Os05g0527600 	LOC_Os05g45150.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008152 - metabolic process		
22225	UGT706G6	OsUGT706G6	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706G6	UDP-dependent glycosyltransferase 706G6	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706G6		5	LOC_Os05g45180.	 Biochemical character	Os05g0527800 	LOC_Os05g45180.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008152 - metabolic process		
22226	UGT706E2	OsUGT706E2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E2	UDP-dependent glycosyltransferase 706E2	UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E2		5	LOC_Os05g45200.	 Biochemical character	Os05g0527900 	LOC_Os05g45200.1				GO:0008152 - metabolic process, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle		
22227	GH10-3	OsGH10-3	GLYCOSIDE HYDROLASE 10-3	glycoside hydrolase 10-3	GLYCOSIDE HYDROLASE 10-3				 Biochemical character								
22228	GH10-4	OsGH10-4	GLYCOSIDE HYDROLASE 10-4	glycoside hydrolase 10-4	GLYCOSIDE HYDROLASE 10-4				 Biochemical character								
22229	GH10-5	OsGH10-5	GLYCOSIDE HYDROLASE 10-5	glycoside hydrolase 10-5	GLYCOSIDE HYDROLASE 10-5				 Biochemical character								
22230	GH10-6	OsGH10-6	GLYCOSIDE HYDROLASE 10-6	glycoside hydrolase 10-6	GLYCOSIDE HYDROLASE 10-6				 Biochemical character								
22231	GH10-7	OsGH10-7	GLYCOSIDE HYDROLASE 10-7	glycoside hydrolase 10-7	GLYCOSIDE HYDROLASE 10-7				 Biochemical character								
22232	GA2OX11	OsGA2ox11, 2-ODD31, Os2-ODD31, 2ODD31, Os2ODD31	GIBBERELLIN 2-OXIDASE 11	2-oxoglutarate-dependent dioxygenase 31	GIBBERELLIN 2-OXIDASE 11		4	LOC_Os04g33360.	 Biochemical character	Os04g0407800	LOC_Os04g33360.1				GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding		
22233	D-LDH 	OsD-LDH, OsD-LDH1, D-LDH1	D-LACTATE DEHYDROGENASE 	D-lactate dehydrogenase, D-lactate dehydrogenase 1	D-LACTATE DEHYDROGENASE 		7	OsD-LDH1 in Jain et al. 2020.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0163000	LOC_Os07g06890.1				GO:0050660 - FAD binding, GO:0009438 - methylglyoxal metabolic process, GO:0009651 - response to salt stress, GO:0005739 - mitochondrion, GO:0051595 - response to methylglyoxal, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors	TO:0006001 - salt tolerance	PO:0020103 - flag leaf 
22234	LESR		LOW EXPOSURE STIGMA RATE	low exposure stigma rate		lesr	10	The mapping data indicated that the LESR locus was located within an interval of 0.25 Mb on chromosome 10 flanked by InDel-2 (13.69 Mb) and InDel-4 (13.94 Mb). Within this region, 7 genes exhibited base differences between the two parents, of which two genes (Os10g0404566, Os10g0407000) differed between the mutant and the wild type plants (Ma et al. 2018).	 Reproductive organ - Spikelet, flower, glume, awn							TO:0000044 - stigma exsertion	
22235	SEC3A	OsSEC3A	EXOCYST SUBUNIT SEC3A	exocyst subunit SEC3A	EXOCYST SUBUNIT SEC3A	Ossec3a	3	GO:1900150: regulation of defense response to fungus.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os03g0625700	LOC_Os03g42750.1, LOC_Os03g42750.2				GO:0005886 - plasma membrane, GO:0006893 - Golgi to plasma membrane transport, GO:0017049 - GTP-Rho binding, GO:0000145 - exocyst, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0050832 - defense response to fungus, GO:0051601 - exocyst localization, GO:0010730 - negative regulation of hydrogen peroxide biosynthetic process, GO:0060548 - negative regulation of cell death, GO:0006887 - exocytosis	TO:0000063 - mimic response, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content, TO:0000180 - spikelet fertility, TO:0000592 - 1000-dehulled grain weight, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000040 - panicle length	
22236	_		_	Putative glucose-6-phosphate isomerase			9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0465600	LOC_Os09g29070.1				GO:0004347 - glucose-6-phosphate isomerase activity, GO:0006094 - gluconeogenesis, GO:0006096 - glycolysis	TO:0000031 - silicon sensitivity	
22238	CCR3	OsCCR3	CINNAMOYL-COA REDUCTASE 3	Cinnamoyl-CoA reductase 3	CINNAMOYL-COA REDUCTASE 3		10		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0576900 	LOC_Os10g42620.1				GO:0050832 - defense response to fungus, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000160 - UV light sensitivity	
22239	CCR4	OsCCR4, OsCCR1, CCR1	CINNAMOYL-COA REDUCTASE 4	Cinnamoyl-CoA reductase 4	CINNAMOYL-COA REDUCTASE 4		1	OsCCR1 in Borah & Khurana 2018, Wang et al. 2020. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0283600 	LOC_Os01g18110.1				GO:0009414 - response to water deprivation, GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity	TO:0000276 - drought tolerance	
22240	CCR5	OsCCR5, OsCCR2, CCR2	CINNAMOYL-COA REDUCTASE 5	Cinnamoyl-CoA reductase 5	CINNAMOYL-COA REDUCTASE 5		1	OsCCR2 in Borah & Khurana 2018.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0283700 	LOC_Os01g18120.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
22241	CCR6	OsCCR6	CINNAMOYL-COA REDUCTASE 6	Cinnamoyl-CoA reductase 6	CINNAMOYL-COA REDUCTASE 6		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0828100 	LOC_Os01g61230.1				GO:0009414 - response to water deprivation, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
22242	CCR7	OsCCR7	CINNAMOYL-COA REDUCTASE 7	Cinnamoyl-CoA reductase 7	CINNAMOYL-COA REDUCTASE 7		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0623600 	LOC_Os06g41840.4, LOC_Os06g41840.3, LOC_Os06g41840.1, LOC_Os06g41840.2				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
22243	CCR8	OsCCR8	CINNAMOYL-COA REDUCTASE 8	Cinnamoyl-CoA reductase 8	CINNAMOYL-COA REDUCTASE 8		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0623300 	LOC_Os06g41810.1				GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation, GO:0050662 - coenzyme binding	TO:0000276 - drought tolerance	
22244	CCR11	OsCCR11	CINNAMOYL-COA REDUCTASE 11	Cinnamoyl-CoA reductase 11	CINNAMOYL-COA REDUCTASE 11		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0812000 	LOC_Os02g56720.2				GO:0009414 - response to water deprivation, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding	TO:0000276 - drought tolerance	
22245	CCR13	OsCCR13	CINNAMOYL-COA REDUCTASE 13	Cinnamoyl-CoA reductase 13	CINNAMOYL-COA REDUCTASE 13		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0811600 	LOC_Os02g56690.1				GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation, GO:0050662 - coenzyme binding	TO:0000276 - drought tolerance	
22246	CCR16	OsCCR16	CINNAMOYL-COA REDUCTASE 16	Cinnamoyl-CoA reductase 16	CINNAMOYL-COA REDUCTASE 16		9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0491820  	LOC_Os09g31502.1, LOC_Os09g31502.2, LOC_Os09g31502.4				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
22247	CCR17	OsCCR17	CINNAMOYL-COA REDUCTASE 17	Cinnamoyl-CoA reductase 17	CINNAMOYL-COA REDUCTASE 17		9		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os09g0127300  	LOC_Os09g04050.1				GO:0050662 - coenzyme binding, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009411 - response to UV, GO:0009414 - response to water deprivation, GO:0003824 - catalytic activity	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity	
22248	CCR22	OsCCR22	CINNAMOYL-COA REDUCTASE 22	Cinnamoyl-CoA reductase 22	CINNAMOYL-COA REDUCTASE 22		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0818200  	LOC_Os03g60380.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
22249	CCR23	OsCCR23	CINNAMOYL-COA REDUCTASE 23	Cinnamoyl-CoA reductase 23	CINNAMOYL-COA REDUCTASE 23		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0578500  	LOC_Os05g50250.1				GO:0009411 - response to UV, GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity, GO:0006694 - steroid biosynthetic process, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000160 - UV light sensitivity	
22250	CCR24	OsCCR24	CINNAMOYL-COA REDUCTASE 24	Cinnamoyl-CoA reductase 24	CINNAMOYL-COA REDUCTASE 24		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0262000  	LOC_Os09g08720.1				GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding, GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity, GO:0009414 - response to water deprivation, GO:0006694 - steroid biosynthetic process	TO:0000276 - drought tolerance	
22251	CCR26	OsCCR26	CINNAMOYL-COA REDUCTASE 26	Cinnamoyl-CoA reductase 26	CINNAMOYL-COA REDUCTASE 26		1	OsDFR (dihydroflavanol reductase) in Qiao et al. 2021.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0978400  	LOC_Os01g74660.1				GO:0050662 - coenzyme binding, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0003824 - catalytic activity	TO:0000276 - drought tolerance	
22252	CCR27	OsCCR27	CINNAMOYL-COA REDUCTASE 27	Cinnamoyl-CoA reductase 27	CINNAMOYL-COA REDUCTASE 27		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0817400  	LOC_Os03g60279.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
22253	CCR28	OsCCR28	CINNAMOYL-COA REDUCTASE 28	Cinnamoyl-CoA reductase 28	CINNAMOYL-COA REDUCTASE 28		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0623200  	LOC_Os06g41800.1				GO:0003824 - catalytic activity, GO:0009414 - response to water deprivation, GO:0050662 - coenzyme binding	TO:0000276 - drought tolerance	
22254	CCR29	OsCCR29, OsDFR6, DFR6	CINNAMOYL-COA REDUCTASE 29	Cinnamoyl-CoA reductase 29, dihydroflavonol 4-reductase 6	CINNAMOYL-COA REDUCTASE 29		8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0183900  	LOC_Os08g08500.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0003824 - catalytic activity, GO:0050662 - coenzyme binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
22255	CCR30	OsCCR30	CINNAMOYL-COA REDUCTASE 30	Cinnamoyl-CoA reductase 30	CINNAMOYL-COA REDUCTASE 30		9	LOC_Os09g09230.	 Biochemical character		LOC_Os09g09230						
22256	CCR31	OsCCR31	CINNAMOYL-COA REDUCTASE 31	Cinnamoyl-CoA reductase 31	CINNAMOYL-COA REDUCTASE 31		9	LOC_Os09g09270.	 Biochemical character		LOC_Os09g09270						
22257	CCR32	OsCCR32	CINNAMOYL-COA REDUCTASE 32	Cinnamoyl-CoA reductase 32	CINNAMOYL-COA REDUCTASE 32		9	LOC_Os09g31498.	 Biochemical character	Os09g0491822	LOC_Os09g31498.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22258	CCR33	OsCCR33	CINNAMOYL-COA REDUCTASE 33	Cinnamoyl-CoA reductase 33	CINNAMOYL-COA REDUCTASE 33		9	LOC_Os09g31506.	 Biochemical character		LOC_Os09g31506						
22260	CCR34	OsCCR34	CINNAMOYL-COA REDUCTASE 34	Cinnamoyl-CoA reductase 34	CINNAMOYL-COA REDUCTASE 34		9	LOC_Os09g31518.	 Biochemical character	Os09g0491868	LOC_Os09g31518.1				GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity		
22261	CCR35	OsCCR35	CINNAMOYL-COA REDUCTASE 35	Cinnamoyl-CoA reductase 35	CINNAMOYL-COA REDUCTASE 35		9	LOC_Os09g31522.	 Tolerance and resistance - Stress tolerance,  Biochemical character		LOC_Os09g31522				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22262	LIL1		LIGHT-INDUCED LESION MIMIC MUTANT 1	light-induced lesion mimic mutant 1			7	LOC_Os07g30510. a putative cysteine-rich receptor-like kinase (CRK).	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os07g0488400	LOC_Os07g30510.1				GO:0050832 - defense response to fungus, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009416 - response to light stimulus, GO:0043067 - regulation of programmed cell death	TO:0000605 - hydrogen peroxide content, TO:0000075 - light sensitivity, TO:0000207 - plant height, TO:0000063 - mimic response, TO:0000074 - blast disease	
22263	BON1 	OsBON1, OsC2DP18, C2DP18, OsvWA5, vWA5	BONZAI 1	C2 Domain-Containing Protein 18, von Willebrand factor A5	C2 DOMAIN-CONTAINING PROTEIN 18		2	closely related to Arabidopsis BON1. copine.	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os02g0521300 	LOC_Os02g32160.1				GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005544 - calcium-dependent phospholipid binding, GO:0031348 - negative regulation of defense response, GO:0009408 - response to heat, GO:0060548 - negative regulation of cell death, GO:0050832 - defense response to fungus	TO:0000259 - heat tolerance, TO:0000255 - sheath blight disease resistance, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000346 - tiller number, TO:0000203 - bacterial leaf streak disease resistance, TO:0000074 - blast disease	PO:0009009 - plant embryo , PO:0020104 - leaf sheath , PO:0007632 - seed maturation stage , PO:0025034 - leaf 
22264	BON3	OsBON3, OsC2DP45, C2DP45, OsvWA16, vWA16	BONZAI 3	C2 Domain-Containing Protein 45, von Willebrand factor A16			5	closely related to Arabidopsis BON3. copine. GO:0090332: stomatal closure.	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os05g0373300  	LOC_Os05g30970.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0060548 - negative regulation of cell death, GO:0071277 - cellular response to calcium ion, GO:0005544 - calcium-dependent phospholipid binding, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0031348 - negative regulation of defense response	TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	PO:0020104 - leaf sheath , PO:0020033 - coleoptile , PO:0025034 - leaf , PO:0009009 - plant embryo 
22265	TDC3	OsTDC3, OsTDC5	TRYPTOPHAN DECARBOXYLASE 3	Trp decarboxylase 3	TRYPTOPHAN DECARBOXYLASE 3		8	OsTDC5 in Bhowal et al. 2021.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Morphological traits - Endosperm	Os08g0140500	LOC_Os08g04560.1				GO:0042427 - serotonin biosynthetic process, GO:0009723 - response to ethylene stimulus, GO:0007623 - circadian rhythm, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0030187 - melatonin biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009607 - response to biotic stimulus, GO:0016831 - carboxy-lyase activity, GO:0009646 - response to absence of light, GO:0010224 - response to UV-B, GO:0006520 - cellular amino acid metabolic process, GO:0009733 - response to auxin stimulus, GO:0009416 - response to light stimulus, GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009414 - response to water deprivation	TO:0000487 - endosperm color, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0002673 - amino acid content, TO:0000167 - cytokinin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000075 - light sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000179 - biotic stress trait, TO:0000601 - UV-B light sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000173 - ethylene sensitivity	PO:0009049 - inflorescence , PO:0009006 - shoot system , PO:0009005 - root 
22266	_	OsOSC12/OsPTS1, OsOSC12, OsPTS1, OSC12, PTS1	_	Oxidosqualene cyclase 12, poaceatapetol synthase 1			8	GO:0090547: response to low humidity. humidity-sensitive genic male sterility (HGMS).	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os08g0223900 					GO:0009408 - response to heat, GO:0009270 - response to humidity, GO:0010208 - pollen wall assembly, GO:0016866 - intramolecular transferase activity	TO:0000441 - humidity related trait, TO:0000437 - male sterility, TO:0000259 - heat tolerance	PO:0009066 - anther 
22267	MMP1 	OsMMP1	MATRIX METALLOPROTEINASE 1	Matrix metalloproteinase 1	MATRIX METALLOPROTEINASE 1		2	KY575874 (indica). TO:0000993: cellulose content. GO:0099402: plant organ development.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0740700	LOC_Os02g50730.1				GO:0005886 - plasma membrane, GO:0006979 - response to oxidative stress, GO:0042545 - cell wall modification, GO:0031012 - extracellular matrix, GO:0008270 - zinc ion binding, GO:0004222 - metalloendopeptidase activity	TO:0002657 - oxidative stress, TO:0000357 - growth and development trait	
22268	BSR-K1 	OsBSR-K1, BSRK1	BROAD-SPECTRUM RESISTANCE KITAAKE-1 	broad-spectrum resistance Kitaake-1, broad-spectrum resistance Kitaake 1			10	a tetratricopeptide repeats (TPRs)-containing protein.	 Tolerance and resistance - Disease resistance	Os10g0548200 					GO:0050832 - defense response to fungus, GO:0055087 - Ski complex, GO:0016441 - posttranscriptional gene silencing, GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
22269	MHZ3	OsMHZ3	MAOHUZI 3	maohuzi3		mhz3, mhz3-1, mhz3-2, mhz3-3, mhz3-4, mhz3-5	6			Os06g0115200	LOC_Os06g02480.1				GO:0009723 - response to ethylene stimulus, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0031397 - negative regulation of protein ubiquitination, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum	TO:0000173 - ethylene sensitivity	
22270	DLK	OsDLK	DUAL LOCALISATION KINESIN 	Dual Localisation Kinesin, Dual Localization Kinesin	DUAL LOCALISATION KINESIN 	dlk	7	A3BFT0. class-XIV kinesis. GO:1901990: regulation of mitotic cell cycle phase transition.	 Tolerance and resistance - Stress tolerance	Os07g0105700	LOC_Os07g01490.1, LOC_Os07g01490.2				GO:0007018 - microtubule-based movement, GO:0009524 - phragmoplast, GO:0005872 - minus-end kinesin complex, GO:0009826 - unidimensional cell growth, GO:0009409 - response to cold, GO:0008017 - microtubule binding, GO:0005874 - microtubule, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005819 - spindle	TO:0000303 - cold tolerance, TO:0001007 - coleoptile length	PO:0020104 - leaf sheath 
22271	GGC2	OsGGC2	_	G gamma subunit GGC2, Heterotrimeric G Protein gamma subunit		ggc2, ggc2-1, ggc2-2, osggc2	8		 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os08g0456600					GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000567 - tiller angle, TO:0006001 - salt tolerance, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000303 - cold tolerance	
22272	_	OsRuvBL1a, RuvBL1a, RUVBL1A	_	RuvB-like protein 1a, RuvB-like 1a			1	LOC_Os01g62040. rice homologue of RuvB gene. similar to RuvB1 from Chaetomium thermophilum. GO:0097255: R2TP complex.	 Tolerance and resistance - Stress tolerance	Os01g0837500	LOC_Os01g62040.1, LOC_Os01g62040.2, LOC_Os01g62040.3				GO:0006351 - transcription, DNA-dependent, GO:0006338 - chromatin remodeling, GO:0005524 - ATP binding, GO:0043141 - ATP-dependent 5'-3' DNA helicase activity, GO:0004003 - ATP-dependent DNA helicase activity, GO:0031011 - Ino80 complex, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0000812 - Swr1 complex, GO:0000492 - box C/D snoRNP assembly, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0016573 - histone acetylation, GO:0035267 - NuA4 histone acetyltransferase complex	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
22273	_	OsRuvBL1b, RuvBL1b, RUVBL1B	_	RuvB-like protein 1b, RuvB-like 1b			7	LOC_Os07g08170. rice homologue of RuvB gene. GO:0097255: R2TP complex.	 Other	Os07g0178900	LOC_Os07g08170.1				GO:0005524 - ATP binding, GO:0043141 - ATP-dependent 5'-3' DNA helicase activity, GO:0035267 - NuA4 histone acetyltransferase complex, GO:0031011 - Ino80 complex, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent		
22274	_	OsRuvBL2a, RuvBL2a, RUVBL2A	_	RuvB-like protein 2a, RuvB-like 2a				rice homologue of RuvB gene.									
22275	DHS	OsRING46, RING46	DROUGHT HYPERSENSITIVE	RING-type E3 ubiquitin ligase 46		dhs	2	LOC_Os02g45780. a RING (Really Interesting New Gene)-type protein. GO:0061630: ubiquitin protein ligase activity. GO:1904277: negative regulation of wax biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os02g0682300	LOC_Os02g45780.1				GO:0010025 - wax biosynthetic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
22277	BDG	Os-BDG, OsBDG	BODYGUARD				6	LOC_Os06g04169. a homolog of Arabidopsis BDG.		Os06g0132500	LOC_Os06g04169.1, LOC_Os06g04169.2						
22278	_	OsPGL1, PGL1	_	Polygalacturonases-Like 1, PG-like 1			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0545400	LOC_Os06g35320.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22279	_	OsPGL2, PGL2	_	Polygalacturonases-Like 2, PG-like 2			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0611500	LOC_Os06g40890.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22280	PGL3	OsPGL3, OsPG2, PG2	POLYGALACTURONASES-LIKE 3	Polygalacturonases-Like 3, PG-like 3, polygalacturonase 2	POLYGALACTURONASES-LIKE 3		1	GO:0071555: cell wall organization.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0517500	LOC_Os01g33300.1				GO:0005975 - carbohydrate metabolic process, GO:0045490 - pectin catabolic process, GO:0022408 - negative regulation of cell-cell adhesion, GO:0050832 - defense response to fungus, GO:0009642 - response to light intensity, GO:0010044 - response to aluminum ion, GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region	TO:0000354 - aluminum sensitivity, TO:0006007 - polysaccharide content, TO:0000460 - light intensity sensitivity, TO:0000074 - blast disease	
22281	_	OsPGL4, PGL4	_	Polygalacturonases-Like 4, PG-like 4			8	GO:0071555: cell wall organization.	 Biochemical character	Os08g0327200	LOC_Os08g23790.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22282	_	OsPGL5, PGL5	_	Polygalacturonases-Like 5, PG-like 5			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0611400	LOC_Os06g40880.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22283	_	OsPGL6, PGL6	_	Polygalacturonases-Like 6, PG-like 6			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0196700	LOC_Os02g10300.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22284	_	OsPGL7, PGL7	_	Polygalacturonases-Like 7, PG-like 7			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0891100	LOC_Os01g66710.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region		
22285	_	OsPGL8, PGL8	_	Polygalacturonases-Like 8, PG-like 8			6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0545800	LOC_Os06g35370.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22286	PGL9	OsPGL9	POLYGALACTURONASES-LIKE 9	Polygalacturonases-Like 9, PG-like 9	POLYGALACTURONASES-LIKE 9		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0542800	LOC_Os05g46510.1				GO:0042545 - cell wall modification, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity, GO:0010238 - response to proline	TO:0000034 - chromium sensitivity	
22287	_	OsPGL10, PGL10	_	Polygalacturonases-Like 10, PG-like 10			6		 Biochemical character	Os06g0545200	LOC_Os06g35300.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22288	_	OsPGL11, PGL11	_	Polygalacturonases-Like 11, PG-like 11			3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0808000	LOC_Os03g59330.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22289	_	OsPGL12, PGL12	_	Polygalacturonases-Like 12, PG-like 12			11	GO:0071555: cell wall organization.	 Biochemical character	Os11g0249400	LOC_Os11g14400.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22290	PSL1	OsPGL13, PGL13, OsPSL1, OsPG1, PG1, LTN-212	PHOTO-SENSITIVE LEAF ROLLING 1	Polygalacturonases-Like 13, PG-like 13, leaf tip necrosis 212, Polygalacturonase 1		psl1, ospg1, ltn-212	1	GO:0071555: cell wall organization. GO:0090547: response to low humidity. GO:1903409: reactive oxygen species biosynthetic process. TO:0000993: cellulose content.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0296200	LOC_Os01g19170.1				GO:0004650 - polygalacturonase activity, GO:0042742 - defense response to bacterium, GO:0006970 - response to osmotic stress, GO:0009642 - response to light intensity, GO:0052386 - cell wall thickening, GO:0005576 - extracellular region, GO:0070265 - necrotic cell death, GO:0009414 - response to water deprivation, GO:0045490 - pectin catabolic process, GO:0005975 - carbohydrate metabolic process	TO:0000095 - osmotic response sensitivity, TO:0000441 - humidity related trait, TO:0000605 - hydrogen peroxide content, TO:0000085 - leaf rolling, TO:0000316 - photosynthetic ability, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000075 - light sensitivity, TO:0000734 - grain length, TO:0000592 - 1000-dehulled grain weight, TO:0000276 - drought tolerance, TO:0000040 - panicle length	
22291	_	OsPGL14, PGL14	_	Polygalacturonases-Like 14, PG-like 14			5		 Biochemical character	Os05g0542900	LOC_Os05g46520.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22292	_	OsPGL15, PGL15	_	Polygalacturonases-Like 15, PG-like 15			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0130200	LOC_Os02g03750.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22293	_	OsPGL16, PGL16	_	Polygalacturonases-Like 16, PG-like 16			7	GO:0071555: cell wall organization.	 Biochemical character	Os07g0208100	LOC_Os07g10730.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22294	_	OsPGL17, PGL17	_	Polygalacturonases-Like 17, PG-like 17			5	GO:0071555: cell wall organization.	 Biochemical character	Os05g0279900	LOC_Os05g20020.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22295	_	OsPGL18, PGL18	_	Polygalacturonases-Like 18, PG-like 18			3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0216800	LOC_Os03g11760.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22296	_	OsPGL19, PGL19	_	Polygalacturonases-Like 19, PG-like 19			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0636500	LOC_Os01g44970.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22297	_	OsPGL20, PGL20	_	Polygalacturonases-Like 20, PG-like 20			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0329300	LOC_Os01g22590.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22298	_	OsPGL21, PGL21	_	Polygalacturonases-Like 21, PG-like 21			5	GO:0071555: cell wall organization.	 Biochemical character	Os05g0578600	LOC_Os05g50260.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22299	_	OsPGL22, PGL22	_	Polygalacturonases-Like 22, PG-like 22			11		 Biochemical character	Os11g0249600	LOC_Os11g14410.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22300	_	OsPGL23, PGL23	_	Polygalacturonases-Like 23, PG-like 23			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0256100	LOC_Os02g15690.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process		
22301	_	OsPGL24, PGL24	_	Polygalacturonases-Like 24, PG-like 24			2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0781000	LOC_Os02g54030.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22302	_	OsPGL25, PGL25	_	Polygalacturonases-Like 25, PG-like 25			9	GO:0071555: cell wall organization.	 Biochemical character	Os09g0439400	LOC_Os09g26800.1				GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region		
22303	_	OsPGL26, PGL26	_	Polygalacturonases-Like 26, PG-like 26			5	GO:0071555: cell wall organization.	 Biochemical character	Os05g0587000	LOC_Os05g50960.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22304	PGL27	OsPGL27	POLYGALACTURONASES-LIKE 27	Polygalacturonases-Like 27, PG-like 27	POLYGALACTURONASES-LIKE 27		7	GO:0071555: cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0245200	LOC_Os07g14160.1, LOC_Os07g14160.2, LOC_Os07g14160.3, LOC_Os07g14160.4				GO:0005576 - extracellular region, GO:0042545 - cell wall modification, GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0010238 - response to proline	TO:0000034 - chromium sensitivity	
22305	_	OsPGL28, PGL28	_	Polygalacturonases-Like 28, PG-like 28			3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0833800	LOC_Os03g61800.1, LOC_Os03g61800.2, LOC_Os03g61800.3				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region		
22306	PGL29	OsPGL29, OsPG1, PG1	POLYGALACTURONASES-LIKE 29	Polygalacturonases-Like 29, PG-like 29, polygalacturonase 1	POLYGALACTURONASES-LIKE 29		3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0124900	LOC_Os03g03350.1				GO:0004650 - polygalacturonase activity, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process		
22307	_	OsPGL30, PGL30	_	Polygalacturonases-Like 30, PG-like 30			8	GO:0071555: cell wall organization.	 Biochemical character	Os08g0107300	LOC_Os08g01600.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22308	_	OsPGL31, PGL31	_	Polygalacturonases-Like 31, PG-like 31			1	GO:0071555: cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0618900	LOC_Os01g43160.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0009409 - response to cold, GO:0004650 - polygalacturonase activity	TO:0000303 - cold tolerance	
22309	_	OsPGL32, PGL32	_	Polygalacturonases-Like 32, PG-like 32			1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0623600	LOC_Os01g43490.1				GO:0005975 - carbohydrate metabolic process, GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity		
22310	_	OsPGL33, PGL33	_	Polygalacturonases-Like 33, PG-like 33			12	GO:0071555: cell wall organization.	 Biochemical character	Os12g0554800	LOC_Os12g36810.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22311	_	OsPGL34, PGL34	_	Polygalacturonases-Like 34, PG-like 34			11	GO:0071555: cell wall organization.	 Biochemical character	Os11g0658800	LOC_Os11g43750.1				GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0004650 - polygalacturonase activity		
22312	_	OsPGL35, PGL35	_	Polygalacturonases-Like 35, PG-like 35			9	GO:0071555: cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0487600	LOC_Os09g31270.1				GO:0005576 - extracellular region, GO:0004650 - polygalacturonase activity, GO:0009651 - response to salt stress, GO:0005774 - vacuolar membrane, GO:0005975 - carbohydrate metabolic process	TO:0006001 - salt tolerance	
22313	OCPI2	OsSRO1a, SRO1a, CPI2, OsCPI2, OCPI1	O. SATIVA CHYMOTRYPSIN PROTEASE INHIBITOR 2	O. sativa chymotrypsin protease inhibitor 2, chymotrypsin protease inhibitor 2, subtilisin-chymotrypsin protease inhibitor 2, similar to RCD one 1a	O. SATIVA CHYMOTRYPSIN PROTEASE INHIBITOR 2		1	a rice homologue of SRO (similar to RCD one). inhibitor I family protein. OCPI1 in Luo et al. 2022.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0615100 	LOC_Os01g42860.1				GO:0008233 - peptidase activity, GO:0009611 - response to wounding, GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0005829 - cytosol	TO:0000095 - osmotic response sensitivity, TO:0000477 - panicle blast disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
22314	DIR48	OsDIR48, OsjDIR48	DIRIGENT 48	dirigent, Dirigent 48, DIR domain protein 48	DIRIGENT 48		11	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os11g0644700	LOC_Os11g42500.1				GO:0048046 - apoplast, GO:0046686 - response to cadmium ion		
22315	ACTPK1	OsACTPK1, ACTPK1-1, ACTPK1-2	ACT DOMAIN CONTAINING PROTEIN KINASE 1	ACT domain containing protein kinase 1	ACT DOMAIN CONTAINING PROTEIN KINASE 1	actpk1-1, actpk1-2	2	GO:0035556: intracellular signal transduction. the NCBI GEO database (accession number GSE66807). TO:0020096: mineral and ion transport trait. GO:1901698: response to nitrogen compound.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0120100 	LOC_Os02g02780.1				GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042594 - response to starvation, GO:0005886 - plasma membrane, GO:0005829 - cytosol	TO:0000011 - nitrogen sensitivity	PO:0009005 - root 
22316	ACTPK2	OsACTPK2	ACT DOMAIN CONTAINING PROTEIN KINASE 2	ACT domain containing protein kinase 2	ACT DOMAIN CONTAINING PROTEIN KINASE 2		7	GO:0035556: intracellular signal transduction.		Os07g0475900  	LOC_Os07g29330.1, LOC_Os07g29330.2, LOC_Os07g29330.3, LOC_Os07g29330.4, LOC_Os07g29330.5				GO:0005829 - cytosol, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
22317	ACTPK3	OsACTPK3	ACT DOMAIN CONTAINING PROTEIN KINASE 3	ACT domain containing protein kinase 3	ACT DOMAIN CONTAINING PROTEIN KINASE 3		9	GO:0035556: intracellular signal transduction.		Os09g0544300   	LOC_Os09g37230.1, LOC_Os09g37230.2				GO:0005829 - cytosol, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
22318	ACTPK5	OsACTPK5	ACT DOMAIN CONTAINING PROTEIN KINASE 5	ACT domain containing protein kinase 5	ACT DOMAIN CONTAINING PROTEIN KINASE 5		8	GO:0035556: intracellular signal transduction.		Os08g0103000   	LOC_Os08g01270.1, LOC_Os08g01270.2, LOC_Os08g01270.3				GO:0004674 - protein serine/threonine kinase activity, GO:0005829 - cytosol, GO:0005524 - ATP binding		
22319	ACTPK6	OsACTPK6	ACT DOMAIN CONTAINING PROTEIN KINASE 6	ACT domain containing protein kinase 6	ACT DOMAIN CONTAINING PROTEIN KINASE 6		12			Os12g0163800    	LOC_Os12g06670.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
22322	ASD1	IWS1, OsIWS1	ALTERNATE SEMI-DWARF 1 	alternate semi-dwarf 1, Interact-With-Spt6 1			1	LOC_Os01g05420. C-terminus family protein. GO:2001253: regulation of histone H3-K36 trimethylation.	 Vegetative organ - Culm	Os01g0147200 	LOC_Os01g05420.1				GO:0032784 - regulation of RNA elongation, GO:0005634 - nucleus, GO:0050684 - regulation of mRNA processing, GO:0010793 - regulation of mRNA export from nucleus	TO:0000207 - plant height, TO:0000145 - internode length, TO:0000051 - stem strength	PO:0009047 - stem 
22323	TL		TWISTED LEAF				12	TL is an antisense long noncoding RNA (lncRNA) transcribed from the opposite strand of the R2R3 MYB transcription factor gene locus, OsMYB60. TO:0000748: leaf morphology trait.	 Other,  Vegetative organ - Leaf	Os12g0124900					GO:0009965 - leaf morphogenesis, GO:0006355 - regulation of transcription, DNA-dependent, GO:0048366 - leaf development		PO:0001050 - leaf development stage 
22324	ZFP7 	OsZFP7	ZINC FINGER PROTEIN 7	zinc finger protein 7	ZINC FINGER PROTEIN 7		7	a C2H2 transcription factor. Os07g0593000 is the closest homolog to GmZFP7 in soybean (Glycine max) and AtZFP7 (At1g24625) in A. thaliana. TO:0000748: leaf morphology trait.	 Other,  Vegetative organ - Leaf	Os07g0593000	LOC_Os07g40300.1				GO:0048366 - leaf development, GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0009965 - leaf morphogenesis		PO:0001050 - leaf development stage 
22325	_	SSP	_	S1 locus-specific peptidase domain-containing protein		SSP-gla	6	"We found that the causal mutation of the S1mut allele was a deletion in the peptidase-coding gene (denoted \"SSP\") in the S1 locus of O. glaberrima. No orthologous genes of SSP were found in the O. sativa genome (Koide et al. 2018)."	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000042 - f1-hybrid incompatibility	
22326	TP1	OsTP1, S1TP, OgTPR1, S1TPR	TRYPSIN-LIKE PEPTIDASE 1	trypsin-like peptidase 1, trypsin-like peptidase/ribosome biogenesis regulatory domain protein 1	TRYPSIN-LIKE PEPTIDASE 1	ogtpr1-1, ogtpr1-2, ogtpr1-3, ogtpr1-4	6	OsTP1 is the allelic counterpart of OgTPR1 (Oryza glaberrima trypsin-like peptidase/ribosome biogenesis regulatory domain protein 1, S1TPR). KY462781 (OsTP1), KY457222 (OgTPR1). OgTPR1 (trypsin-like peptidase and RRS domains)  has a positive role in the S1-mediated interspecific hybrid sterility; loss of mutation of this gene can rescue male and female fertility in hybrids (Xie et al. 2017). Three closely linked genes (S1A4, S1TPR, and S1A6) in the African S1 allele (S1-g) constitute a killer- protector system that eliminates gametes carrying the Asian allele (S1-s). The S1-s allele in O. sativa harbors only the defective S1TP gene (an S1TPR allele which is a truncated form of S1TPR) and lacks the functional gamete killer and protector (S1A4 or S1A6 alleles). (Xie et al., 2019)	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os06g0142000 	LOC_Os06g04970.1				GO:0008233 - peptidase activity	TO:0000053 - pollen sterility, TO:0000358 - female sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000421 - pollen fertility, TO:0000436 - spikelet sterility, TO:0000437 - male sterility	
22327	BPH34	Bph34	BROWN PLANTHOPPER RESISTANCE 34	BPH resistance 34			4	Bph34 was identified in Oryza nivara acc. IRGC104646 on long arm of chromosome 4. The Bph34 locus is 91 Kb in size on Nipponbare reference genome-IRGSP-1.0 and contains 11 candidate genes. Two SSR markers, RM16994 and RM17007, co-segregated with the Bph34. Bph34 is non-allelic to Bph6 and Bph27(t) which are found in this QTL region. (Kumar et al. 2018)	 Tolerance and resistance - Insect resistance						GO:0009625 - response to insect	TO:0000424 - brown planthopper resistance	
22328	SPL	OsSPL	SPOROCYTELESS			Osspl, Osspl-1, Osspl-2, Osspl-3, Osspl-4	5	GO:0110044: regulation of cell cycle switching, mitotic to meiotic cell cycle.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0501800 	LOC_Os05g42240.1				GO:0052545 - callose localization, GO:0009554 - megasporogenesis, GO:0051728 - cell cycle switching, mitotic to meiotic cell cycle, GO:0006325 - chromatin organization	TO:0000485 - sterility related trait	
22329	_	OsSPEAR1, SPEAR1	_	"\"SPL-like, EAR-containing protein 1\""			1			Os01g0231100	LOC_Os01g13040.1						
22330	SPEAR2	OsSPEAR2, SPEAR2, OsTIE1, TIE1	SPL-LIKE, EAR-CONTAINING PROTEIN 2, TCP INTERACTOR CONTAINING EAR MOTIF PROTEIN1 	"\"SPL-like, EAR-containing protein 2\""	SPL-LIKE, EAR-CONTAINING PROTEIN 2		1			Os01g0212500	LOC_Os01g11430.1						
22331	_	OsSPEAR3, SPEAR3	_	"\"SPL-like, EAR-containing protein 3\""			1			Os01g0676900	LOC_Os01g48530.1						
22332	_	OsSPEAR4, SPEAR4	_	"\"SPL-like, EAR-containing protein 4\""			3	LOC_Os03g26070.		Os03g0377900	LOC_Os03g26070.1						
22333	_	OsSPEAR6, SPEAR6	_	"\"SPL-like, EAR-containing protein 6\""			5			Os05g0559316	LOC_Os05g48570.1						
22335	_	OsBetvI, BetvI	_	pathogenesis-related BetvI family protein			8	LOC_Os08g28670.1 	 Tolerance and resistance	Os08g0374000	LOC_Os08g28670.1				GO:0006952 - defense response, GO:0009607 - response to biotic stimulus		
22336	PHS1	OsPHS1	POOR HOMOLOGOUS SYNAPSIS 1	Poor homologous synapsis 1			6			Os06g0473000 	LOC_Os06g27860.1						
22337	PSL15	OsPSL15	PREMATURE SENESCENCE LEAF 15	premature senescence leaf 15		psl15		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl15 is non-allelic to psl50, psl117 and psl270. The allelism between psl15 and psl89 could not be determined because their F1 plants were not viable.	 Coloration - Chlorophyll,  Vegetative organ - Leaf						GO:0009658 - chloroplast organization, GO:0008219 - cell death, GO:0010150 - leaf senescence	TO:0000605 - hydrogen peroxide content, TO:0000316 - photosynthetic ability, TO:0000496 - carotenoid content, TO:0000249 - leaf senescence, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000295 - chlorophyll-b content	PO:0001054 - 4 leaf senescence stage 
22338	PSL50	OsPSL50	PREMATURE SENESCENCE LEAF 50	premature senescence leaf 50		psl50		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl50 is non-allelic to psl15, psl89 and psl270. The allelism between psl50 and psl117 could not be determined because their F1 plants were not viable.	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0008219 - cell death, GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization	TO:0000316 - photosynthetic ability, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000605 - hydrogen peroxide content	PO:0001054 - 4 leaf senescence stage 
22339	PSL89	OsPSL89	PREMATURE SENESCENCE LEAF 89	premature senescence leaf 89		psl89		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl89 is non-allelic to psl50, psl117 and psl270. The allelism between psl15 and psl89 could not be determined because their F1 plants were not viable.	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0009658 - chloroplast organization, GO:0008219 - cell death, GO:0010150 - leaf senescence	TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000326 - leaf color	PO:0001054 - 4 leaf senescence stage 
22340	PSL117	OsPSL117	PREMATURE SENESCENCE LEAF 117	premature senescence leaf 117		psl117		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl117 is non-allelic to psl15, psl89 and psl270. The allelism between psl50 and psl117 could not be determined because their F1 plants were not viable.	 Vegetative organ - Leaf,  Coloration - Chlorophyll						GO:0008219 - cell death, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence	TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content	PO:0001054 - 4 leaf senescence stage 
22341	PSL270	OsPSL270	PREMATURE SENESCENCE LEAF 270	premature senescence leaf 270		psl270		Five premature senescence leaf (psl15, psl50, psl89, psl117 and psl270) mutants were identified from a mutant bank generated by ethyl methane sulfonate (EMS) mutagenesis of elite indica rice ZhongJian100. psl270 is non-allelic to the other four mutants. 	 Coloration - Chlorophyll,  Vegetative organ - Leaf						GO:0008219 - cell death, GO:0009658 - chloroplast organization, GO:0009737 - response to abscisic acid stimulus, GO:0010150 - leaf senescence, GO:0009646 - response to absence of light	TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000295 - chlorophyll-b content, TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0000496 - carotenoid content, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000326 - leaf color	PO:0001054 - 4 leaf senescence stage 
22342	GS7		GRAIN SHAPE 7	grain shape 7, GRAIN SHAPE ON CHROMOSOME 7		GS7-A, GS7-B	7		 Seed - Morphological traits,  Character as QTL - Yield and productivity							TO:0000734 - grain length, TO:0002730 - grain shape, TO:0000382 - 1000-seed weight	
22343	_	GDCi, OsGDCi, OsGAD, GAD, OsGAD4, GAD4	_	GLU DECARBOXYLASE ISOZYME1, GLU DECARBOXYLASE ISOZYME 1, glutamate decarboxylase 1			3	OsCaM1 target gene. OsGAD4 in Prodhan et al. 2022, Li et al. 2023.	 Seed - Physiological traits - Taste,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0720300	LOC_Os03g51080.1				GO:0001666 - response to hypoxia, GO:0004351 - glutamate decarboxylase activity, GO:0006536 - glutamate metabolic process, GO:0009651 - response to salt stress, GO:0030170 - pyridoxal phosphate binding	TO:0000015 - oxygen sensitivity, TO:0000326 - leaf color, TO:0006001 - salt tolerance, TO:0000087 - aroma	
22344	CRO	OsCRO	CROTONASE	crotonase	CROTONASE		6	LOC_Os06g39344.	 Biochemical character	Os06g0594100	LOC_Os06g39344.1, LOC_Os06g39344.2, LOC_Os06g39344.3				GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity		
22345	_		_	gamma-thionin family domain-containing protein			2	LOC_Os02g07628.	 Biochemical character		LOC_Os02g07628						
22346	_	OsACK1, ACK1	_				1	Q9AWM8. Kinesin-7 family.		Os01g0513900	LOC_Os01g33040.1				GO:0009524 - phragmoplast, GO:0005524 - ATP binding, GO:0003777 - microtubule motor activity, GO:0000911 - cytokinesis by cell plate formation, GO:0009558 - cellularization of the embryo sac, GO:0005874 - microtubule, GO:0007018 - microtubule-based movement, GO:0008017 - microtubule binding, GO:0005871 - kinesin complex, GO:0016887 - ATPase activity, GO:0009555 - pollen development		
22347	_	OsKCBP, KCBP	_	kinesin-like calmodulin-binding protein			4	Q7XPJ0. Kinesin-14 family. OsCaM1 target gene.		Os04g0666900	LOC_Os04g57140.2, LOC_Os04g57140.1				GO:0005737 - cytoplasm, GO:0003777 - microtubule motor activity, GO:0005516 - calmodulin binding, GO:0016887 - ATPase activity, GO:0008017 - microtubule binding, GO:0007018 - microtubule-based movement, GO:0005874 - microtubule, GO:0016491 - oxidoreductase activity, GO:0005871 - kinesin complex, GO:0005524 - ATP binding		
22348	PAY1		PLANT ARCHITECTURE AND YIELD 1				8	LOC_Os08g31470. TO:0020106: Indole-3-acetic acid content.	 Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os08g0407200	LOC_Os08g31470.1, LOC_Os08g31470.2, LOC_Os08g31470.3, LOC_Os08g31470.4				GO:0009926 - auxin polar transport, GO:0010229 - inflorescence development	TO:0000346 - tiller number, TO:0000447 - filled grain number, TO:0000207 - plant height, TO:0002672 - auxin content, TO:0000339 - stem thickness, TO:0000145 - internode length, TO:0000472 - vascular bundle number, TO:0000576 - stem length, TO:0000567 - tiller angle, TO:0006032 - panicle size, TO:0000152 - panicle number, TO:0000621 - inflorescence development trait, TO:0000449 - grain yield per plant, TO:0000396 - grain yield	PO:0020148 - shoot apical meristem , PO:0000017 - vascular leaf primordium , PO:0009051 - spikelet , PO:0001083 - inflorescence development stage 
22349	MRG701	OsMRG701	MORF-RELATED GENE 701	MORF-RELATED GENE701	MORF-RELATED PROTEIN 701		4		 Other	Os04g0101300	LOC_Os04g01130.1				GO:0006325 - chromatin organization, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0016021 - integral to membrane		
22350	MRG702	OsMRG702	MORF-RELATED GENE 702	MORF-RELATED GENE702	MORF-RELATED PROTEIN 702	Osmrg702	11		 Reproductive organ - Panicle, Mode of branching,  Other,  Seed - Morphological traits,  Reproductive organ - Heading date,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os11g0545600	LOC_Os11g34300.1, LOC_Os11g34300.2, LOC_Os11g34300.3, LOC_Os11g34305.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0016021 - integral to membrane, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0016573 - histone acetylation, GO:2000028 - regulation of photoperiodism, flowering, GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0006325 - chromatin organization, GO:0005634 - nucleus, GO:0043981 - histone H4-K5 acetylation, GO:0006351 - transcription, DNA-dependent	TO:0000145 - internode length, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending, TO:0002616 - flowering time, TO:0000456 - spikelet number, TO:0002757 - flag leaf length, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000269 - 100-seed weight, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0000137 - days to heading	PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf 
22351	RAV6	OsRAV6, OsNGA2, NGA2	RAV FAMILY GENE 6	RELATED TO ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1 (VP1) 6, RAV family gene 6, NGATHA 2, NGATHA Transcription Factor 2	RAV FAMILY PROTEIN 6	Epi-rav6	2	Q6EU30. GO:1900457: regulation of brassinosteroid mediated signaling pathway.	 Other,  Vegetative organ - Leaf,  Seed - Morphological traits	Os02g0683500	LOC_Os02g45850.1				GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009507 - chloroplast, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009742 - brassinosteroid mediated signaling, GO:0010268 - brassinosteroid homeostasis, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent	TO:0000146 - seed length, TO:0000391 - seed size, TO:0000592 - 1000-dehulled grain weight, TO:0000206 - leaf angle, TO:0000149 - seed width, TO:0000304 - seed thickness	
22352	NGA1	OsNGA1	NGATHA 1	NGATHA Transcription Factor 1	NGATHA 1		3	Q8LMR9. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os03g0120900	LOC_Os03g02900.1				GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent		
22353	NGA5	OsNGA5	NGATHA 5	NGATHA Transcription Factor 5	NGATHA 5		10	Q8LNN8. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os10g0537100	LOC_Os10g39190.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent		
22355	NGA4	OsNGA4	NGATHA 4	NGATHA Transcription Factor 4	NGATHA 4		8	Q7EZD5. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os08g0157700	LOC_Os08g06120.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0005737 - cytoplasm, GO:0003677 - DNA binding		
22356	RAP2.8	OsRAP2.8, NGAL1-1, OsNGAL1-1	_	RELATED-TO-AP28, NGATHA-LIKE 1-1, OsNGA-LIKE1-1, NGA-LIKE1-1			11	Q53QI0. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os11g0156000	LOC_Os11g05740.1				GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009723 - response to ethylene stimulus, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000173 - ethylene sensitivity	PO:0009005 - root 
22357	_		_				2	LOC_Os02g25830. Q6K3B1. RAV subfamily of B3 DNA-binding domain-containing protein in Zhang et al. 2015.	 Other	Os02g0455900	LOC_Os02g25830.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006351 - transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus		
22358	DCA1	OsDCA1, DST1, OsDST1, OsRING161, RING161	DST CO-ACTIVATOR 1	DST Co-activator 1, RING-type E3 ubiquitin ligase 161		dca1	10	a CHY zinc finger protein. GO:1901001: negative regulation of response to salt stress. GO:0080148: negative regulation of response to water deprivation. GO:0090333: regulation of stomatal closure. GO:0099402: plant organ development.	 Character as QTL - Germination,  Other,  Tolerance and resistance - Stress tolerance	Os10g0456800	LOC_Os10g31850.5, LOC_Os10g31850.1, LOC_Os10g31850.2				GO:0009845 - seed germination, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0003713 - transcription coactivator activity, GO:0008270 - zinc ion binding, GO:0009413 - response to flooding	TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance	PO:0007057 - 0 seed germination stage , PO:0007045 - coleoptile emergence stage 
22360	REL1	OsREL1	ROLLED AND ERECT LEAF 1	rolled and erect leaf 1, rolled and erect 1		rel1, rel1-D	1	TO:0006064: rolled leaf. TO:0000748: leaf morphology trait. GO:1900457: regulation of brassinosteroid mediated signaling pathway. GO:1902584: positive regulation of response to water deprivation. GO:2000377: regulation of reactive oxygen species metabolic process.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0863500					GO:0009414 - response to water deprivation, GO:0009741 - response to brassinosteroid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0009507 - chloroplast, GO:0009742 - brassinosteroid mediated signaling	TO:0000276 - drought tolerance, TO:0000085 - leaf rolling, TO:0000207 - plant height, TO:0002677 - brassinosteroid sensitivity, TO:0000590 - grain weight, TO:0000615 - abscisic acid sensitivity, TO:0000396 - grain yield, TO:0000206 - leaf angle, TO:0002730 - grain shape	PO:0009013 - portion of meristem tissue 
22361	REL2	OsREL2, OsDLT10, DLT10, RSD1, OsRSD1, RSD1/REL2	ROLLED AND ERECT LEAF 2	rolled and erect leaf 2, dwarf and low tillering 10, rice stomata developmental defect 1		rel2, Osdlt10, rsd1, rsd1-1, rsd1-2	10	TO:0006064: rolled leaf. TO:0000975: grain width. GO:0090506: axillary shoot meristem initiation. GO:0050891: multicellular organismal water homeostasis.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os10g0562700	LOC_Os10g41310.1				GO:0010374 - stomatal complex development, GO:0009414 - response to water deprivation, GO:0009965 - leaf morphogenesis, GO:0009734 - auxin mediated signaling pathway, GO:0005886 - plasma membrane, GO:0010252 - auxin homeostasis, GO:0009733 - response to auxin stimulus	TO:0000276 - drought tolerance, TO:0002672 - auxin content, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000329 - tillering ability, TO:0000163 - auxin sensitivity, TO:0000566 - stomatal frequency, TO:0000326 - leaf color, TO:0000206 - leaf angle, TO:0002688 - leaf lamina joint bending, TO:0000346 - tiller number, TO:0002730 - grain shape, TO:0000447 - filled grain number, TO:0002681 - leaf curling, TO:0000661 - tiller bud dormancy, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0001027 - net photosynthetic rate, TO:0001018 - transpiration rate	PO:0004709 - axillary bud , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009000 - pulvinus , PO:0020141 - stem node 
22362	ACL1	OsACL1, ACL2, OsACL2	ABAXIALLY CURLED LEAF 1	abaxially curled leaf 1			4	ACL1 and ACL2 in Yang et al. 2016. GO:2000011: regulation of adaxial/abaxial pattern formation. TO:0006064: rolled leaf.	 Vegetative organ - Leaf	Os04g0415000	LOC_Os04g33860.1				GO:0048366 - leaf development	TO:0000207 - plant height	PO:0020104 - leaf sheath , PO:0001050 - leaf development stage , PO:0025034 - leaf 
22363	DOF12OS	OsDof12os, Dof12os	DOF12 OPPOSITE STRAND	antisense OsDof12 transcripts, opposite strand of OsDof12, OsDof12 opposite strand			3		 Tolerance and resistance - Stress tolerance	Os03g0169700					GO:0009646 - response to absence of light, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000460 - light intensity sensitivity	
22364	CHX2	OsCHX02, CHX02, OsCHX2	CATION/H+ EXCHANGER  2	cation/H+ exchanger  2	CATION/H+ EXCHANGER  2		8		 Biochemical character	Os08g0550600	LOC_Os08g43690.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0016021 - integral to membrane		
22365	CHX5	OsCHX05, CHX05, OsCHX5	CATION/H+ EXCHANGER  5	cation/H+ exchanger  5	CATION/H+ EXCHANGER  5		5		 Biochemical character	Os05g0473401	LOC_Os05g39600.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0016021 - integral to membrane, GO:0015672 - monovalent inorganic cation transport, GO:0012505 - endomembrane system, GO:0006885 - regulation of pH		PO:0009046 - flower 
22366	CHX6	OsCHX06, CHX06, OsCHX6	CATION/H+ EXCHANGER  6	cation/H+ exchanger  6	CATION/H+ EXCHANGER  6		12	BX000492: complement 54,565-56,984.	 Biochemical character	Os12g0109150/Os12g0109150	LOC_Os12g01820.1						PO:0009046 - flower 
22367	CHX7	OsCHX07, CHX07, OsCHX7	CATION/H+ EXCHANGER  7	cation/H+ exchanger  7	CATION/H+ EXCHANGER  7		11		 Biochemical character	Os11g0109400	LOC_Os11g01820.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0015672 - monovalent inorganic cation transport, GO:0012505 - endomembrane system, GO:0016021 - integral to membrane		
22368	CHX8	OsCHX08, CHX08, OsCHX8	CATION/H+ EXCHANGER  8	cation/H+ exchanger  8	CATION/H+ EXCHANGER  8		8		 Biochemical character	Os08g0117800	LOC_Os08g02450.1				GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system, GO:0015299 - solute:hydrogen antiporter activity, GO:0006885 - regulation of pH		PO:0009046 - flower 
22369	CHX9	OsCHX09, CHX09, OsCHX9	CATION/H+ EXCHANGER  9	cation/H+ exchanger  9	CATION/H+ EXCHANGER  9		12		 Biochemical character	Os12g0121600	LOC_Os12g02840.1				GO:0006885 - regulation of pH, GO:0015672 - monovalent inorganic cation transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system, GO:0016021 - integral to membrane		PO:0009046 - flower 
22370	CHX10	OsCHX10	CATION/H+ EXCHANGER  10	cation/H+ exchanger  10	CATION/H+ EXCHANGER  10		11		 Biochemical character	Os11g0123600	LOC_Os11g03070.1				GO:0006885 - regulation of pH, GO:0012505 - endomembrane system, GO:0015299 - solute:hydrogen antiporter activity, GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane		
22371	CHX12	OsCHX12	CATION/H+ EXCHANGER  12	cation/H+ exchanger  12	CATION/H+ EXCHANGER  12		5		 Biochemical character	Os05g0113300	LOC_Os05g02240.1				GO:0030104 - water homeostasis, GO:0030007 - cellular potassium ion homeostasis, GO:0016021 - integral to membrane, GO:0015672 - monovalent inorganic cation transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system, GO:0006885 - regulation of pH, GO:0006623 - protein targeting to vacuole, GO:0005783 - endoplasmic reticulum		PO:0005052 - plant callus 
22372	CHX13	OsCHX13	CATION/H+ EXCHANGER  13	cation/H+ exchanger  13	CATION/H+ EXCHANGER  13		3		 Biochemical character	Os03g0828600	LOC_Os03g61290.1				GO:0016021 - integral to membrane, GO:0006885 - regulation of pH, GO:0012505 - endomembrane system, GO:0015299 - solute:hydrogen antiporter activity, GO:0015672 - monovalent inorganic cation transport		
22373	CHX14	OsCHX14	CATION/H+ EXCHANGER  14	cation/H+ exchanger  14	CATION/H+ EXCHANGER  14		5	LOC_Os05g19500.	 Biochemical character	Os05g0276100	LOC_Os05g19500.1, LOC_Os05g19500.2				GO:0005783 - endoplasmic reticulum, GO:0006813 - potassium ion transport, GO:0015299 - solute:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0012505 - endomembrane system, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0055075 - potassium ion homeostasis, GO:0016021 - integral to membrane, GO:0015672 - monovalent inorganic cation transport		PO:0009046 - flower , PO:0009073 - stigma , PO:0000034 - vascular system , PO:0009072 - plant ovary , PO:0009036 - lodicule , PO:0025281 - pollen , PO:0009066 - anther 
22374	CHX16	OsCHX16	CATION/H+ EXCHANGER  16	cation/H+ exchanger  16	CATION/H+ EXCHANGER  16		5		 Biochemical character	Os05g0485000	LOC_Os05g40650.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0012505 - endomembrane system, GO:0006885 - regulation of pH, GO:0016021 - integral to membrane, GO:0015672 - monovalent inorganic cation transport		PO:0005052 - plant callus 
22375	CHX17	OsCHX17	CATION/H+ EXCHANGER  17	cation/H+ exchanger  17	CATION/H+ EXCHANGER  17		1		 Biochemical character	Os01g0817400	LOC_Os01g60140.1				GO:0015299 - solute:hydrogen antiporter activity, GO:0006885 - regulation of pH, GO:0015672 - monovalent inorganic cation transport, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system		
22376	THIS1	OsTHIS1, CHA-1, OsCHA-1	HIGH TILLERING, REDUCED HEIGHT, AND INFERTILE SPIKELETS 1	"\"high-tillering, reduced height with infertile spikelet 1\", \"high tillering, reduced height, and infertile spikelets 1\""		this1, cha-1	1	a putative member of Class III lipase. TO:0020106: Indole-3-acetic acid content. GO:2000032: regulation of secondary shoot formation. GO:0061458: reproductive system development. GO:1901601: strigolactone biosynthetic process.	 Biochemical character,  Reproductive organ - panicle,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility	Os01g0751600	LOC_Os01g54810.1				GO:0016787 - hydrolase activity, GO:0009733 - response to auxin stimulus, GO:0001558 - regulation of cell growth, GO:0016298 - lipase activity, GO:0042127 - regulation of cell proliferation, GO:0010223 - secondary shoot formation, GO:0009734 - auxin mediated signaling pathway, GO:0006629 - lipid metabolic process, GO:0051302 - regulation of cell division, GO:0005737 - cytoplasm, GO:0010152 - pollen maturation, GO:0009901 - anther dehiscence	TO:0000476 - growth hormone content, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000455 - seed set percent, TO:0000180 - spikelet fertility, TO:0000014 - panicle weight, TO:0000474 - glume opening, TO:0000421 - pollen fertility, TO:0000214 - anther shape, TO:0000163 - auxin sensitivity, TO:0000135 - leaf length, TO:0000531 - anther length, TO:0000145 - internode length, TO:0000370 - leaf width, TO:0006032 - panicle size	PO:0025034 - leaf , PO:0009046 - flower , PO:0009010 - seed , PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath 
22377	RPL1		RICE PLASTICITY 1	rice plasticity 1		rpl1	6	LOC_Os06g13640. GO:1905642: negative regulation of DNA methylation.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0245600	LOC_Os06g13640.1, LOC_Os06g13640.2				GO:0005634 - nucleus, GO:0035066 - positive regulation of histone acetylation, GO:0009736 - cytokinin mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009740 - gibberellic acid mediated signaling, GO:0006306 - DNA methylation	TO:0000346 - tiller number, TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000456 - spikelet number, TO:0020020 - primary shoot branch number, TO:0020019 - secondary shoot branch number, TO:0000145 - internode length	PO:0006016 - leaf epidermis , PO:0006036 - root epidermis , PO:0025178 - stem epidermis , PO:0005020 - vascular bundle 
22378	LCD	OsLCD	LOW CADMIUM	Low cadmium, low Cd		lcd, LCD-1, LCD-2, LCD-3	1	TO:1000056: shoot system cadmium content. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os01g0956700	LOC_Os01g72670.4, LOC_Os01g72670.3, LOC_Os01g72670.2, LOC_Os01g72670.1				GO:0010233 - phloem transport, GO:0015691 - cadmium ion transport, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0046686 - response to cadmium ion		PO:0025034 - leaf , PO:0005020 - vascular bundle , PO:0000071 - companion cell , PO:0005417 - phloem , PO:0009015 - portion of vascular tissue , PO:0009006 - shoot system , PO:0009005 - root 
22379	DEL1	OsPLL12, PLL12	DWARF AND EARLY-SENESCENCE LEAF 1	dwarf and early-senescence leaf1, Pectate lyase-like 12	PECTATE LYASE-LIKE 12	del1	10	a PECTATE LYASE-LIKE gene. strong similarity with plant PelC. GO:1902808: positive regulation of cell cycle G1/S phase transition. GO:1900057: positive regulation of leaf senescence. GO:0090391: geranium assembly. TO:0000993: cellulose content. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Coloration - Chlorophyll,  Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Seed - Morphological traits	Os10g0457200	LOC_Os10g31910.1				GO:0043069 - negative regulation of programmed cell death, GO:0046872 - metal ion binding, GO:0030570 - pectate lyase activity, GO:0045490 - pectin catabolic process, GO:0042545 - cell wall modification, GO:0010238 - response to proline, GO:0009658 - chloroplast organization, GO:0048573 - photoperiodism, flowering, GO:0048316 - seed development, GO:0010150 - leaf senescence, GO:0022402 - cell cycle process, GO:0010394 - homogalacturonan metabolic process	TO:0000207 - plant height, TO:0001015 - photosynthetic rate, TO:0000495 - chlorophyll content, TO:0000695 - leaf margin color, TO:0000132 - basal internode diameter, TO:0000145 - internode length, TO:0000653 - seed development trait, TO:0000605 - hydrogen peroxide content, TO:0000397 - grain size, TO:0001013 - lateral root number, TO:0000227 - root length, TO:0000249 - leaf senescence, TO:0000590 - grain weight, TO:0000137 - days to heading, TO:0000326 - leaf color, TO:0000346 - tiller number, TO:0006006 - monosaccharide content, TO:0000040 - panicle length, TO:0000034 - chromium sensitivity	PO:0000003 - whole plant , PO:0001170 - seed development stage , PO:0009047 - stem , PO:0001054 - 4 leaf senescence stage , PO:0009005 - root 
22380	SLG	OsSLG	SLENDER GRAIN	slender grain		slg-D	8	PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Biochemical character,  Reproductive organ - panicle	Os08g0562500	LOC_Os08g44840.1				GO:0005634 - nucleus, GO:0010090 - trichome morphogenesis, GO:0010229 - inflorescence development, GO:0001558 - regulation of cell growth, GO:0010268 - brassinosteroid homeostasis, GO:0051179 - localization, GO:0010143 - cutin biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0005737 - cytoplasm, GO:0005829 - cytosol	TO:0000621 - inflorescence development trait, TO:0000590 - grain weight, TO:0000206 - leaf angle, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0002676 - brassinosteroid content	PO:0025127 - primordium , PO:0000034 - vascular system , PO:0009037 - lemma , PO:0020141 - stem node , PO:0006327 - spikelet meristem , PO:0000229 - flower meristem , PO:0025477 - floral organ primordium , PO:0009038 - palea , PO:0001083 - inflorescence development stage 
22381	LPL2		LESS PRONOUNCED LOBE EPIDERMAL CELL 2	less pronounced lobe epidermal cell2, PIROGI/Specifically Rac1-associated protein 1 (PIR/SRA1)-like protein		lpl2-1, lpl2-2, lpl2-3	3	LOC_Os03g05020. a homolog of the SCAR/WAVE complex components. GO:0090558: plant epidermis development. GO:0090626: plant epidermis morphogenesis.	 Vegetative organ - Root,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle	Os03g0143800	LOC_Os03g05020.1				GO:0045604 - regulation of epidermal cell differentiation, GO:0045010 - actin nucleation, GO:0007015 - actin filament organization	TO:0000207 - plant height, TO:0000227 - root length, TO:0000040 - panicle length, TO:0000566 - stomatal frequency	
22382	LPL3	OsLPL3, DS8, OsDS8	LESS PRONOUNCED LOBE EPIDERMAL CELL 3	less pronounced lobe epidermal cell3, NCK-associated protein 1 (NAP1)-like protein, drought sensitive 8		lpl3-1, ds8	8	Q6ZBH9. a homolog of the SCAR/WAVE complex components. GO:0090558: plant epidermis development. GO:0090626: plant epidermis morphogenesis. GO:0090332: stomatal closure.	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os08g0544500	LOC_Os08g43130.1				GO:0007015 - actin filament organization, GO:0009738 - abscisic acid mediated signaling, GO:0042335 - cuticle development, GO:0045010 - actin nucleation, GO:0009414 - response to water deprivation, GO:0045604 - regulation of epidermal cell differentiation	TO:0000566 - stomatal frequency, TO:0000420 - fertility related trait, TO:0000276 - drought tolerance, TO:0000207 - plant height, TO:0002667 - abscisic acid content, TO:0000520 - stomatal closure rate	
22383	LC3	OsLC3	LEAF INCLINATION 3	LEAF INCLINATION3		lc3	6	LOC_Os06g39480. a SPOC domain-containing protein. TO: 0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf	Os06g0595900	LOC_Os06g39480.1				GO:0010252 - auxin homeostasis, GO:0051510 - regulation of unidimensional cell growth, GO:0006351 - transcription, DNA-dependent, GO:0010930 - negative regulation of auxin mediated signaling pathway	TO:0002688 - leaf lamina joint bending, TO:0000163 - auxin sensitivity, TO:0000206 - leaf angle	PO:0009039 - glume , PO:0009051 - spikelet , PO:0009010 - seed , PO:0025281 - pollen 
22384	HTH1	OsHTH1	HOTHEAD 1	HOTHEAD1			4	a homolog of Arabidopsis ACE/HTH. PO:0030123: panicle inflorescence. TO:1000022: anther morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os04g0573100	LOC_Os04g48400.1				GO:0048653 - anther development, GO:0050660 - FAD binding, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0010143 - cutin biosynthetic process, GO:0009555 - pollen development	TO:0000604 - fat and essential oil content, TO:0000421 - pollen fertility, TO:0000180 - spikelet fertility, TO:0000214 - anther shape, TO:0000053 - pollen sterility	PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0025545 - anther wall tapetum cell , PO:0004013 - epidermal cell , PO:0009066 - anther 
22385	_		_	HTH1-related protein			3		 Biochemical character	Os03g0118700	LOC_Os03g02700.1				GO:0050660 - FAD binding, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0016829 - lyase activity		
22386	_		_	HTH1-related protein			2		 Biochemical character	Os02g0678300	LOC_Os02g45530.1				GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0050660 - FAD binding		
22387	_		_	HTH1-related protein			6		 Biochemical character	Os06g0656000	LOC_Os06g44540.1				GO:0016829 - lyase activity, GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors, GO:0050660 - FAD binding		
22388	AN3-1	An3-1	AWN3-1	Awn3-1, Awn 3-1			3	Awn3-1 high expression prevent or inhibit awn development (Li et al. 2016).	 Reproductive organ - Spikelet, flower, glume, awn	Os03g0418600	LOC_Os03g30519.1, LOC_Os03g30519.2					TO:0002734 - awn presence, TO:0000072 - awn length	
22389	TRX8	OsTRXM1, TRXM1, OsTrx08, Trx08, OsTrx8, Trx8	THIOREDOXIN 8	thioredoxin M1, THIOREDOXIN M-TYPE 1	THIOREDOXIN 8		2	Q6H7E4. a chloroplast m type thioredoxin.	 Biochemical character	Os02g0639900	LOC_Os02g42700.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0034599 - cellular response to oxidative stress, GO:0045454 - cell redox homeostasis, GO:0007584 - response to nutrient, GO:0004791 - thioredoxin-disulfide reductase activity, GO:0005737 - cytoplasm, GO:0006662 - glycerol ether metabolic process, GO:0047134 - protein-disulfide reductase activity, GO:0009507 - chloroplast	TO:0000480 - nutrient sensitivity	
22390	_	OsTDL1B, TDL1B	_	TPD1-like 1B			10	Q8S6P9. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os10g0207500	LOC_Os10g14020.1, LOC_Os10g14020.2						PO:0009051 - spikelet , PO:0009066 - anther , PO:0009005 - root 
22391	RPL21	OsRPL21, Rpl21, OsRpl21	RIBOSOMAL PROTEIN L21	ribosomal protein L21, ribosomal protein large subunit 21	RIBOSOMAL PROTEIN L21		2		 Other	Os02g0259600	LOC_Os02g15900.1				GO:0009941 - chloroplast envelope, GO:0009793 - embryonic development ending in seed dormancy, GO:0009658 - chloroplast organization, GO:0003723 - RNA binding, GO:0009409 - response to cold, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0009570 - chloroplast stroma, GO:0005634 - nucleus, GO:0005840 - ribosome, GO:0010027 - thylakoid membrane organization		
22393	PGL1	OsPGL1	PALE GREEN LEAVES 1	Pale Green Leaves 1		Ospgl1, Ospgl1-1, Ospgl1-2	12	LOC_Os12g06650. dual-localized PPR (pentatricopeptide repeat) protein. DYW motif-containing protein. GO:1900865: chloroplast RNA modification. GO:1900864: mitochondrial RNA modification.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os12g0163600	LOC_Os12g06650.1				GO:0008270 - zinc ion binding, GO:0009658 - chloroplast organization, GO:0009451 - RNA modification	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000495 - chlorophyll content	
22394	MORF1	OsMORF1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 1	multiple organellar RNA editing factor 1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 1		11	GO:0080156: mitochondrial mRNA modification.	 Tolerance and resistance - Stress tolerance	Os11g0216400	LOC_Os11g11020.1				GO:0009409 - response to cold, GO:0016554 - cytidine to uridine editing, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
22395	MORF2	OsMORF2, OsMORF2a, MORF2a	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2	multiple organellar RNA editing factor 2	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2		6	GO:0080156: mitochondrial mRNA modification.	 Tolerance and resistance - Stress tolerance	Os06g0116600	LOC_Os06g02600.1				GO:0005739 - mitochondrion, GO:0016554 - cytidine to uridine editing, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0020103 - flag leaf 
22396	MORF8	OsMORF8, OsMORF8b, MORF8b, OsMORF8-2, MORF8-2	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8	multiple organellar RNA editing factor 8	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8		9	GO:0080156: mitochondrial mRNA modification.	 Tolerance and resistance - Stress tolerance	Os09g0509000	LOC_Os09g33480.1				GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0016554 - cytidine to uridine editing, GO:0009409 - response to cold, GO:0009507 - chloroplast	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf 
22397	MORF9	OsMORF9	MULTIPLE ORGANELLAR RNA EDITING FACTOR 9	multiple organellar RNA editing factor 9	MULTIPLE ORGANELLAR RNA EDITING FACTOR 9		8	GO:1900865: chloroplast mRNA modification.	 Tolerance and resistance - Stress tolerance	Os08g0139100	LOC_Os08g04450.3, LOC_Os08g04450.2, LOC_Os08g04450.1				GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0016554 - cytidine to uridine editing, GO:0042803 - protein homodimerization activity, GO:0009941 - chloroplast envelope, GO:0009409 - response to cold, GO:0009570 - chloroplast stroma	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0020103 - flag leaf 
22398	MORF3	OsMORF3	MULTIPLE ORGANELLAR RNA EDITING FACTOR 3	multiple organellar RNA editing factor 3	MULTIPLE ORGANELLAR RNA EDITING FACTOR 3		3	GO:0080156: mitochondrial mRNA modification.	 Tolerance and resistance - Stress tolerance	Os03g0581600	LOC_Os03g38490.1				GO:0009651 - response to salt stress, GO:0005739 - mitochondrion, GO:0050897 - cobalt ion binding, GO:0046983 - protein dimerization activity, GO:0009409 - response to cold, GO:0016554 - cytidine to uridine editing	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf 
22399	MORF8A	MORF8-like, OsMORF8a, MORF8a, OsMORF8-1, MORF8-1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8A	multiple organellar RNA editing factor 8-like, multiple organellar RNA editing factor 8a	MULTIPLE ORGANELLAR RNA EDITING FACTOR 8A		9	GO:0080156: mitochondrial mRNA modification.	 Tolerance and resistance - Stress tolerance	Os09g0132600	LOC_Os09g04670.1				GO:0016554 - cytidine to uridine editing, GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf 
22400	_	OsPTR10, PTR10, OsNPF7.7, NPF7.7, OsNPF7.7-1, OsNPF7.7-2	_	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.7, PROTEIN TRANSPORTER 10		osnpf7.7	10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity. GO:0071705: nitrogen compound transport. TO:0020100: nitrate uptake. TO:0020094: nitrate content.	 Biochemical character	Os10g0579600	LOC_Os10g42870.1, LOC_Os10g42870.2				GO:0019740 - nitrogen utilization, GO:0015333 - peptide:hydrogen symporter activity, GO:0016021 - integral to membrane	TO:0000357 - growth and development trait, TO:0000440 - grain number per plant, TO:0000346 - tiller number, TO:0002673 - amino acid content, TO:0002639 - shoot branching, TO:0000396 - grain yield, TO:0000447 - filled grain number	
22401	GS9		GRAIN SHAPE GENE ON CHROMOSOME 9	Grain Shape Gene on Chromosome 9, Grain Shape 9		gs9	9	LOC_Os09g27590. MF621928. TO:0000975: grain width. TO:0000931: seed quality trait.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape	Os09g0448500	LOC_Os09g27590.1				GO:0007140 - male meiosis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0007143 - female meiosis, GO:0005634 - nucleus, GO:0051302 - regulation of cell division	TO:0002730 - grain shape, TO:0000266 - chalky endosperm	
22402	ALBA2	OsAlba2, Alba2	ACETYLATION LOWERS BINDING AFFINITY 2	acetylation lowers binding affinity protein 2, acetylation lowers binding affinity 2, Alba family protein 2			2		 Tolerance and resistance - Stress tolerance	Os02g0202500 	LOC_Os02g10810.1				GO:0009753 - response to jasmonic acid stimulus, GO:0003676 - nucleic acid binding, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
22403	ALBA3	OsAlba3, Alba3, NABP, OsNABP	ACETYLATION LOWERS BINDING AFFINITY 3	acetylation lowers binding affinity protein 3, acetylation lowers binding affinity 3, Alba family protein 3, nucleic acid binding protein			3		 Tolerance and resistance - Stress tolerance	Os03g0735300 	LOC_Os03g52490.1				GO:0009409 - response to cold, GO:0003676 - nucleic acid binding, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
22404	ALBA4	OsAlba4, Alba4	ACETYLATION LOWERS BINDING AFFINITY 4	acetylation lowers binding affinity protein 4, acetylation lowers binding affinity 4, Alba family protein 4			3	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os03g0166000 	LOC_Os03g06980.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0003676 - nucleic acid binding, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000259 - heat tolerance	PO:0020103 - flag leaf , PO:0009005 - root 
22405	ALBA5	OsAlba5, Alba5	ACETYLATION LOWERS BINDING AFFINITY 5	acetylation lowers binding affinity protein 5, acetylation lowers binding affinity 5, Alba family protein 5			4		 Tolerance and resistance - Stress tolerance	Os04g0428950 	LOC_Os04g34940.1				GO:0009751 - response to salicylic acid stimulus, GO:0003676 - nucleic acid binding, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation	TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
22406	ALBA6	OsAlba6, Alba6	ACETYLATION LOWERS BINDING AFFINITY 6	acetylation lowers binding affinity protein 6, acetylation lowers binding affinity 6, Alba family protein 6			6	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os06g0602600 	LOC_Os06g40040.1, LOC_Os06g40040.2				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0003676 - nucleic acid binding, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity	PO:0020103 - flag leaf 
22407	ALBA7	OsAlba7, Alba7	ACETYLATION LOWERS BINDING AFFINITY 7	acetylation lowers binding affinity protein 7, acetylation lowers binding affinity 7, Alba family protein 7			9		 Tolerance and resistance - Stress tolerance	Os09g0542000 	LOC_Os09g37006.1, LOC_Os09g37006.2				GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0003676 - nucleic acid binding, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	
22408	ALBA8	OsAlba8, Alba8	ACETYLATION LOWERS BINDING AFFINITY 8	acetylation lowers binding affinity protein 8, acetylation lowers binding affinity 8, Alba family protein 8			11	LOC_Os11g06760. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os11g0168300 	LOC_Os11g06760.1, LOC_Os11g06760.2				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0003676 - nucleic acid binding, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	PO:0009047 - stem , PO:0020103 - flag leaf 
22409	ALBA9	OsAlba9, Alba9	ACETYLATION LOWERS BINDING AFFINITY 9	acetylation lowers binding affinity protein 9, acetylation lowers binding affinity 9, Alba family protein 9			12		 Tolerance and resistance - Stress tolerance	Os12g0489300 	LOC_Os12g30550.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009409 - response to cold, GO:0003676 - nucleic acid binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	PO:0020103 - flag leaf , PO:0009047 - stem 
22410	RLI1	OsRLI1, RLI1/HINGE1, HINGE1, OsHINGE1	REGULATOR OF LEAF INCLINATION1 	REGULATOR OF LEAF INCLINATION 1, Highly Induced by Nitrate Gene 1	REGULATOR OF LEAF INCLINATION1 	rli1, rli1-1, rli1-2, rli1-T, rli1-C, osrli1	4	SPX1-interacting protein. TO:0020102: phosphate content. TO:0020098: nitrate sensitivity. GO:0035618: root hair. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0665600	LOC_Os04g56990.3, LOC_Os04g56990.2, LOC_Os04g56990.1				GO:0019740 - nitrogen utilization, GO:0006796 - phosphate metabolic process, GO:0006794 - phosphorus utilization, GO:0042126 - nitrate metabolic process, GO:0051510 - regulation of unidimensional cell growth, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0010167 - response to nitrate, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000206 - leaf angle, TO:0000102 - phosphorus sensitivity, TO:0002688 - leaf lamina joint bending	PO:0006036 - root epidermis , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0003011 - root vascular system , PO:0009049 - inflorescence 
22411	ZOS9-19	OsSIP1, OsSUF4, SUF4, OsZOS9-19, SIP1	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-19	SDG723/OsTrx1/OsSET33 Interaction Protein 1, SDG723/OsTrx1 Interaction Protein 1, SUPPRESSOR OF FRI 4, zinc-finger protein TFIIIA class of Oryza sativa 9-19, ZPT of Oryza sativa 9-19	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-19	sip1, sip1-1, sip1-2, sip1-3	9	C2H2-type zinc finger tran- scription factor.	 Other,  Reproductive organ - Heading date	Os09g0560900	LOC_Os09g38790.3, LOC_Os09g38790.2, LOC_Os09g38790.1				GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding	TO:0000137 - days to heading, TO:0002616 - flowering time	
22412	ML1	OsML1	MESOCOTYL LENGTH 1	mesocotyl length 1			3	LOC_Os03g53320. deep-sowing tolerance. tolerance to dry direct-seeding.	 Vegetative organ - Culm	Os03g0744900	LOC_Os03g53320.1					TO:0000544 - mesocotyl length	
22413	ML2	OsML2	MESOCOTYL LENGTH 2	mesocotyl length 2			7	LOC_Os07g24010. deep-sowing tolerance. tolerance to dry direct-seeding.	 Vegetative organ - Culm	Os07g0422280	LOC_Os07g24010					TO:0000544 - mesocotyl length	
22414	_	OsFDML2, FDML2	_	FACTOR OF DNA METHYLATION LIKE 2			1	LOC_Os01g03570.		Os01g0126600                     	LOC_Os01g03570.1				GO:0005634 - nucleus		PO:0009073 - stigma , PO:0009072 - plant ovary , PO:0009051 - spikelet 
22415	_	OsFDML1, FDML1	_	FACTOR OF DNA METHYLATION LIKE 1		osfdml1, osfdml1-1, osfdml1-2	2	LOC_Os02g19130. a rice homolog of the SUPPRESSOR OF GENE SILENCING3-like gene FACTOR OF DNA METHYLATION 1 (FDM1) from Arabidopsis. TO:1000024: palea morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0293300                     	LOC_Os02g19130.1				GO:0009909 - regulation of flower development, GO:0005634 - nucleus, GO:0031047 - gene silencing by RNA	TO:0006022 - floral organ development trait, TO:0006012 - carpel anatomy and morphology trait	PO:0020003 - plant ovule , PO:0007615 - flower development stage , PO:0025477 - floral organ primordium , PO:0009072 - plant ovary , PO:0009073 - stigma , PO:0009051 - spikelet 
22416	ERS1 	OsERS1	GLUTAMYL-TRNA SYNTHETASE 1	glutamyl-tRNA synthetase 1	GLUTAMYL-TRNA SYNTHETASE 1	osers1	10	LOC_Os10g22380. GO:2000254: regulation of male germ cell proliferation. TO:1000022: anther morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn	Os10g0369000	LOC_Os10g22380.1, LOC_Os10g22380.2				GO:0006425 - glutaminyl-tRNA aminoacylation, GO:0004819 - glutamine-tRNA ligase activity, GO:0004818 - glutamate-tRNA ligase activity, GO:0005829 - cytosol, GO:0005739 - mitochondrion, GO:0048654 - anther morphogenesis, GO:0017102 - methionyl glutamyl tRNA synthetase complex, GO:0048653 - anther development, GO:0005524 - ATP binding, GO:0006424 - glutamyl-tRNA aminoacylation	TO:0000214 - anther shape	PO:0001004 - anther development stage 
22417	ERS2	OsERS2	GLUTAMYL-TRNA SYNTHETASE 2	glutamyl-tRNA synthetase 2	GLUTAMYL-TRNA SYNTHETASE 2		1	LOC_Os01g16520.		Os01g0271200	LOC_Os01g16520.1				GO:0004819 - glutamine-tRNA ligase activity, GO:0005524 - ATP binding, GO:0017102 - methionyl glutamyl tRNA synthetase complex, GO:0005739 - mitochondrion, GO:0005829 - cytosol, GO:0006424 - glutamyl-tRNA aminoacylation, GO:0006425 - glutaminyl-tRNA aminoacylation, GO:0004818 - glutamate-tRNA ligase activity		
22418	ERS3	OsERS3	GLUTAMYL-TRNA SYNTHETASE 3	glutamyl-tRNA synthetase 3	GLUTAMYL-TRNA SYNTHETASE 3		2	LOC_Os02g02860.		Os02g0121000	LOC_Os02g02860.1				GO:0048481 - ovule development, GO:0005524 - ATP binding, GO:0000049 - tRNA binding, GO:0009570 - chloroplast stroma, GO:0005739 - mitochondrion, GO:0006424 - glutamyl-tRNA aminoacylation, GO:0004818 - glutamate-tRNA ligase activity, GO:0008270 - zinc ion binding		
22419	ARC	OsARC	_				1	LOC_Os01g60660. rice homolog of yeast Arc1p. 		Os01g0821800	LOC_Os01g60660.1, LOC_Os01g60660.2				GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex, GO:0006418 - tRNA aminoacylation for protein translation, GO:0000049 - tRNA binding, GO:0004812 - aminoacyl-tRNA ligase activity, GO:0017102 - methionyl glutamyl tRNA synthetase complex		
22420	_	H4	_	HISTONE4, Histone H4			9	LOC_Os09g38020.	 Other	Os09g0553100	LOC_Os09g38020.1				GO:0006334 - nucleosome assembly, GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0046982 - protein heterodimerization activity, GO:0003677 - DNA binding		
22421	UPS1	OsUPS1	UREIDE PERMEASE 1	ureide permease1	UREIDE PERMEASE 1		4	GO:1901698: response to nitrogen compound. GO:0071705: nitrogen compound transport.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0503000	LOC_Os12g31860.6, LOC_Os12g31860.1, LOC_Os12g31860.2, LOC_Os12g31860.3, LOC_Os12g31860.4, LOC_Os12g31860.5				GO:0005274 - allantoin uptake transmembrane transporter activity, GO:0015505 - uracil:cation symporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0042451 - purine nucleoside biosynthetic process, GO:0019428 - allantoin biosynthetic process, GO:0016020 - membrane, GO:0022857 - transmembrane transporter activity, GO:0060359 - response to ammonium ion	TO:0000011 - nitrogen sensitivity	PO:0009015 - portion of vascular tissue 
22422	FSE6	OsGINT1, GINT1, OsFSE6	FLOURY AND SHRUNKEN ENDOSPERM 6	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1, floury and shrunken endosperm 6	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 1	fse6	5	Q53WK1. a rice AtGINT1 homolog. Loss of OsGINT1 results in seedling lethality (Ishikawa et al. 2018).	 Character as QTL - Grain quality,  Biochemical character,  Seed - Morphological traits - Grain shape,  Seed - Morphological traits - Endosperm,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Longevity	Os05g0540000 	LOC_Os05g46260.1				GO:0006486 - protein amino acid glycosylation, GO:0009270 - response to humidity, GO:0016021 - integral to membrane, GO:0030259 - lipid glycosylation, GO:0009960 - endosperm development, GO:0040007 - growth, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0009660 - amyloplast organization, GO:0009408 - response to heat	TO:0000696 - starch content, TO:0000435 - seed longevity, TO:0000598 - protein content, TO:0000487 - endosperm color, TO:0000345 - seed viability, TO:0000104 - floury endosperm, TO:0000259 - heat tolerance, TO:0002730 - grain shape, TO:0010001 - percent germination, TO:0000250 - vigor related trait, TO:0000604 - fat and essential oil content, TO:0000441 - humidity related trait, TO:0000196 - amylose content	PO:0007633 - endosperm development stage 
22423	GMT1	OsGMT1	GIPC MANNOSYL-TRANSFERASE 1	GIPC MANNOSYL-TRANSFERASE1	GIPC MANNOSYL-TRANSFERASE 1		6		 Biochemical character	Os06g0705000 	LOC_Os06g49150.1				GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0006486 - protein amino acid glycosylation		
22424	_	OsMYB86L, MYB86L	_	MYB transcription factor 86L			8	LOC_Os08g36460.	 Other		LOC_Os08g36460						
22425	_	Get3	_	Get3 orthologue, Guided Entry of Tail-anchored protein 3 ortholog			9	GO:0071816: tail-anchored membrane protein insertion into ER membrane.		Os09g0521500	LOC_Os09g34970.1				GO:0048767 - root hair elongation, GO:0005737 - cytoplasm, GO:0005783 - endoplasmic reticulum, GO:0005524 - ATP binding, GO:0043621 - protein self-association, GO:0006620 - posttranslational protein targeting to membrane, GO:0005829 - cytosol, GO:0043529 - GET complex, GO:0016887 - ATPase activity		
22426	_	Get3	_	Get3 orthologue, Guided Entry of Tail-anchored protein 3 ortholog			2			Os02g0711200	LOC_Os02g48130.1				GO:0010287 - plastoglobule, GO:0009507 - chloroplast		
22427	_	Get3	_	Get3 orthologue, Guided Entry of Tail-anchored protein 3 ortholog			2			Os02g0745000	LOC_Os02g51100.1				GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
22428	_	Get1	_	Guided Entry of Tail-anchored protein 1, Get1 orthologue, Guided Entry of Tail-anchored protein 1 ortholog			6	GO:0071816: tail-anchored membrane protein insertion into ER membrane.		Os06g0198700	LOC_Os06g09840.1				GO:0043621 - protein self-association, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0022627 - cytosolic small ribosomal subunit, GO:0003735 - structural constituent of ribosome, GO:0048767 - root hair elongation		
22429	_	Get4	_	Guided Entry of Tail-anchored protein 4, Get4 orthologue, Guided Entry of Tail-anchored protein 4 ortholog			1	GO:0071818: BAT3 complex.		Os01g0164700	LOC_Os01g07100.1				GO:0045048 - protein insertion into ER membrane		
22430	WP3		WHITE PANICLE 3	WHITE PANICLE3		wp3	1	JN794567. PO:0030123: panicle inflorescence. GO:0090391: geranium assembly. TO:0020118: neoxanthin content. TO:0020119: violaxanthin content. 	 Coloration - Chlorophyll,  Reproductive organ - panicle,  Coloration - Others,  Vegetative organ - Leaf	Os01g0306650	LOC_Os01g20100.1				GO:0010027 - thylakoid membrane organization, GO:0005739 - mitochondrion, GO:0007005 - mitochondrion organization, GO:0009658 - chloroplast organization	TO:0000293 - chlorophyll-a content, TO:0002715 - chloroplast development trait, TO:0000201 - panicle color, TO:0000069 - variegated leaf, TO:0000289 - carotene content, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0002701 - lutein content	PO:0009046 - flower , PO:0000025 - root tip 
22431	CYTC1-1	CytC1-1	CYTOCHROME C1-1	cytochrome c1-1	CYTOCHROME C1-1		5		 Biochemical character	Os05g0301700	LOC_Os05g23620.1, LOC_Os05g23620.2, LOC_Os05g23620.3, LOC_Os05g23620.4				GO:0005750 - mitochondrial respiratory chain complex III, GO:0045153 - electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0042776 - mitochondrial ATP synthesis coupled proton transport, GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c		
22432	ZL16 	OsHAD1, HAD1	ZEBRA LEAF 16	zebra leaf 16, Beta-hydroxyacyl-ACP dehydrate 1	BETA-HYDROXYACYL-ACP DEHYDRATE 1	zl16, zl16-1, zl16-2	8	LOC_Os08g12840. TO:0006060: leaf chlorosis.	 Biochemical character,  Coloration - Others,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os08g0225000	LOC_Os08g12840.1				GO:0006633 - fatty acid biosynthetic process, GO:0005737 - cytoplasm, GO:0016836 - hydro-lyase activity, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf	PO:0025034 - leaf 
22433	HAD2 	OsHAD2	BETA-HYDROXYACYL-ACP DEHYDRATE 2	Beta-hydroxyacyl-ACP dehydrate 2	BETA-HYDROXYACYL-ACP DEHYDRATE 2		5		 Biochemical character	Os05g0435700	LOC_Os05g36000.1				GO:0005737 - cytoplasm, GO:0006633 - fatty acid biosynthetic process, GO:0016836 - hydro-lyase activity		PO:0025034 - leaf 
22434	CTZFP8	OsCTZFP8	COLD TOLERANCE ZINC FINGER PROTEIN IN CHROMOSOME 8	cold tolerance zinc finger protein in chromosome 8	COLD TOLERANCE ZINC FINGER PROTEIN IN CHROMOSOME 8		8	LOC_Os08g20580.	 Tolerance and resistance - Stress tolerance	Os08g0300366	LOC_Os08g20580.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0003676 - nucleic acid binding	TO:0000303 - cold tolerance	
22435	BZR2	OsBZR2, OsBES1-2, BES1-2	BRASSINAZOLE RESISTANT 2	BRASSINAZOLE-RESISTANT2, BRI1-EMSSUPPRESSOR1-2, BRI1-EMSSUPPRESSOR 1-2			1	Q0JPT4.	 Tolerance and resistance - Stress tolerance	Os01g0203000	LOC_Os01g10610.1				GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0040008 - regulation of growth, GO:0006970 - response to osmotic stress, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0006351 - transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009742 - brassinosteroid mediated signaling	TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0007010 - whole plant fruit ripening stage , PO:0007041 - inflorescence emergence stage , PO:0007014 - booting stage , PO:0007112 - 1 main shoot growth stage , PO:0007057 - 0 seed germination stage , PO:0007073 - 2 formation of axillary shoot stage , PO:0007089 - stem elongation stage , PO:0007042 - whole plant fruit formation stage , PO:0007616 - flowering stage 
22436	BZR3	OsBZR3, OsBES1-5, BES1-5	BRASSINAZOLE RESISTANT 3	BRASSINAZOLE-RESISTANT3, BRI1-EMSSUPPRESSOR1-5, BRI1-EMSSUPPRESSOR 1-5		bzr3	6	Q5Z9E5. BES1/BZR1 homolog. GO:2000280: regulation of root development.	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Culm,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Root	Os06g0552300	LOC_Os06g35900.1				GO:0003677 - DNA binding, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0048364 - root development, GO:0006351 - transcription, DNA-dependent, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0009742 - brassinosteroid mediated signaling, GO:0040008 - regulation of growth	TO:0000455 - seed set percent, TO:0000152 - panicle number, TO:0000371 - yield trait, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000207 - plant height, TO:0000592 - 1000-dehulled grain weight, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000227 - root length, TO:0000421 - pollen fertility	PO:0007057 - 0 seed germination stage , PO:0007042 - whole plant fruit formation stage , PO:0007616 - flowering stage , PO:0007041 - inflorescence emergence stage , PO:0007089 - stem elongation stage , PO:0007073 - 2 formation of axillary shoot stage 
22437	BZR4	OsBZR4, OsBES1-4, BES1-4	BRASSINAZOLE RESISTANT 4	BRASSINAZOLE-RESISTANT4, BRI1-EMSSUPPRESSOR1-4, BRI1-EMSSUPPRESSOR 1-4			2	Q6EUF1.	 Tolerance and resistance - Stress tolerance	Os02g0233200	LOC_Os02g13900.1				GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009742 - brassinosteroid mediated signaling, GO:0040008 - regulation of growth, GO:0003700 - transcription factor activity, GO:0006351 - transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009408 - response to heat	TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0007010 - whole plant fruit ripening stage , PO:0007042 - whole plant fruit formation stage , PO:0007616 - flowering stage , PO:0007041 - inflorescence emergence stage , PO:0007014 - booting stage , PO:0007089 - stem elongation stage , PO:0007073 - 2 formation of axillary shoot stage , PO:0007112 - 1 main shoot growth stage , PO:0007057 - 0 seed germination stage 
22438	_		_				1		 Tolerance and resistance - Stress tolerance	Os01g0617900	LOC_Os01g43070.1, LOC_Os01g43070.2				GO:0005509 - calcium ion binding, GO:0019898 - extrinsic to membrane, GO:0015979 - photosynthesis, GO:0009409 - response to cold, GO:0009654 - oxygen evolving complex	TO:0000303 - cold tolerance	
22439	SAP18	OsSAP18	_	co-repressor OsSAP18			2	LOC_Os02g02960. a rice homolog of Arabidopsis SAP.	 Other	Os02g0122000	LOC_Os02g02960.1, LOC_Os02g02960.2, LOC_Os02g02960.3, LOC_Os02g02960.4				GO:0006351 - transcription, DNA-dependent		
22440	SDS2	OsSDS2, SDRLK-SDS2, OsSDRLK-SDS2	SPL11 CELL-DEATH SUPPRESSOR 2	SPL11 cell-death suppressor 2, S-Domain receptor like kinase-SDS2	SPL11 CELL-DEATH SUPPRESSOR 2	sds2, sds2III	1	S-domain family (SD-1a type) RLK.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Lesion mimic	Os01g0783800	LOC_Os01g57480.1				GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0031349 - positive regulation of defense response, GO:0043068 - positive regulation of programmed cell death, GO:0005886 - plasma membrane	TO:0000439 - fungal disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000203 - bacterial leaf streak disease resistance, TO:0000074 - blast disease, TO:0000063 - mimic response	
22441	SDS1	OsSDS1	SPL11 CELL-DEATH SUPPRESSOR 1	SPL11 cell-death suppressor 1	SPL11 CELL-DEATH SUPPRESSOR 1	sds1			 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000605 - hydrogen peroxide content, TO:0000063 - mimic response, TO:0000203 - bacterial leaf streak disease resistance, TO:0000074 - blast disease	
22442	SDS3	OsSDS3	SPL11 CELL-DEATH SUPPRESSOR 3	SPL11 cell-death suppressor 3	SPL11 CELL-DEATH SUPPRESSOR 3	sds3			 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000203 - bacterial leaf streak disease resistance, TO:0000063 - mimic response, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content	
22443	OXS3	OsOXS3	OXIDATIVE STRESS 3				2	rice homolog of Arabidopsis AtOXS3.	 Tolerance and resistance - Stress tolerance	Os02g0684400	LOC_Os02g45930.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22444	O3L1	OsO3L1	OXS3-LIKE 1	OXIDATIVE STRESS 3-like 1, OXS3-like 1			4	rice OXS3 homolog.		Os04g0583200	LOC_Os04g49370.1						
22445	O3L2	OsO3L2	OXS3-LIKE 2	OXIDATIVE STRESS 3-like 2, OXS3-like 2			6	rice OXS3 homolog. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os06g0559400	LOC_Os06g36390.1, LOC_Os06g36390.2				GO:0042393 - histone binding, GO:0046686 - response to cadmium ion, GO:0005634 - nucleus		PO:0025034 - leaf , PO:0000025 - root tip , PO:0020104 - leaf sheath , PO:0009005 - root 
22446	O3L3	OsO3L3	OXS3-LIKE 3	OXIDATIVE STRESS 3-like 3, OXS3-like 3			2	rice OXS3 homolog. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os02g0227100 	LOC_Os02g13370.1				GO:0005634 - nucleus, GO:0042393 - histone binding, GO:0046686 - response to cadmium ion		PO:0020104 - leaf sheath , PO:0009005 - root , PO:0025034 - leaf , PO:0000025 - root tip 
22447	O3L4	OsO3L4	OXS3-LIKE 4	OXIDATIVE STRESS 3-like 4, OXS3-like 4			5	rice OXS3 homolog.		Os05g0524100 	LOC_Os05g44900.1						
22448	O3L5	OsO3L5	OXS3-LIKE 5	OXIDATIVE STRESS 3-like 5, OXS3-like 5			1	rice OXS3 homolog.		Os01g0739500 	LOC_Os01g53730.1						
22449	O3L6	OsO3L6	OXS3-LIKE 6	OXIDATIVE STRESS 3-like 6, OXS3-like 6			8	rice OXS3 homolog.		Os08g0458200 	LOC_Os08g35630.1						
22450	O3L7	OsO3L7	OXS3-LIKE 7	OXIDATIVE STRESS 3-like 7, OXS3-like 7			6	rice OXS3 homolog.		Os06g0698748 	LOC_Os06g48500.1, LOC_Os06g48500.2						
22451	TF1L	OsTF1L, OsHDZ24, OsHDZIP24, HDZ24, HDZIP24	TRANSCRIPTION FACTOR 1-LIKE	homeodomain-leucine zipper transcription factor 24, OsHDZIP transcription factor 24	TRANSCRIPTION FACTOR 1-LIKE		8	START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:1901141: regulation of lignin biosynthetic process. GO:0090333: regulation of stomatal closure. TO:0020095:  stomatal process related trait.	 Tolerance and resistance - Stress tolerance	Os08g0292000	LOC_Os08g19590.1, LOC_Os08g19590.2, LOC_Os08g19590.3				GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0008289 - lipid binding, GO:0003677 - DNA binding, GO:0009809 - lignin biosynthetic process, GO:0010118 - stomatal movement, GO:0009414 - response to water deprivation	TO:0000172 - jasmonic acid sensitivity, TO:0000136 - relative water content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
22452	DHHC4	OsDHHC4, OsDHHC04, DHHC04	DHHC DOMAIN PROTEIN 4	DHHC domain protein 4	DHHC DOMAIN PROTEIN 4		1		 Biochemical character	Os01g0925300	LOC_Os01g70100.1				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0006612 - protein targeting to membrane		
22453	CASPL5B1	OsCASPL5B1	CASP-LIKE PROTEIN 5B1	CASP-like protein 5B1, CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN-like protein 5B1	CASP-LIKE PROTEIN 5B1		1	Q5N794.		Os01g0847300	LOC_Os01g62850.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
22454	_		_				12	Nodulin protein		Os12g0637800	LOC_Os12g44070.1				GO:0016021 - integral to membrane		
22455	ACP	OsACP	ADENYLYL CYCLASE-ASSOCIATED PROTEIN	adenylyl cyclase-associated protein	ADENYLYL CYCLASE-ASSOCIATED PROTEIN		3	LOC_Os03g51250.1		Os03g0722600	LOC_Os03g51250.1				GO:0005634 - nucleus, GO:0003779 - actin binding, GO:0008179 - adenylate cyclase binding, GO:0008154 - actin polymerization or depolymerization, GO:0000902 - cell morphogenesis, GO:0007163 - establishment or maintenance of cell polarity, GO:0045761 - regulation of adenylate cyclase activity, GO:0030864 - cortical actin cytoskeleton		
22456	IPMS1	OsIPMS1	ISOPROPYLMALATE SYNTHASE 1	isopropylmalate synthase 1	ISOPROPYLMALATE SYNTHASE 1	osipms1, osipms1a, osipms1b, osipms1c	11	SCC (sulfur-containing compound) biosynthetic gene. GO:2000881: regulation of starch catabolic process.	 Biochemical character,  Seed - Physiological traits - Dormancy	Os11g0142500	LOC_Os11g04670.1, LOC_Os11g04670.2				GO:0044272 - sulfur compound biosynthetic process, GO:0010029 - regulation of seed germination, GO:0043467 - regulation of generation of precursor metabolites and energy, GO:0003852 - 2-isopropylmalate synthase activity, GO:0043201 - response to leucine, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0006099 - tricarboxylic acid cycle, GO:0005983 - starch catabolic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0009507 - chloroplast, GO:0009098 - leucine biosynthetic process, GO:0006110 - regulation of glycolysis	TO:0006002 - proline content, TO:0000340 - total soluble sugar content, TO:0002673 - amino acid content, TO:0000345 - seed viability	PO:0007057 - 0 seed germination stage 
22457	IPMS2	OsIPMS2	ISOPROPYLMALATE SYNTHASE 2	isopropylmalate synthase 2	ISOPROPYLMALATE SYNTHASE 2		12	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os12g0138900	LOC_Os12g04440.1, LOC_Os12g04440.2				GO:0003852 - 2-isopropylmalate synthase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0009098 - leucine biosynthetic process, GO:0009507 - chloroplast, GO:0043201 - response to leucine		
22458	SMT1-2	OsSMT1-2	STEROL METHYLTRANSFERASE 1-2	sterol methyltransferase 1-2, sterol-C24-methyltransferase 1-2	STEROL METHYLTRANSFERASE 1-2		3		 Biochemical character	Os03g0807600 	LOC_Os03g59290.1				GO:0008168 - methyltransferase activity, GO:0016126 - sterol biosynthetic process		
22459	SMT1-3	OsSMT1-3	STEROL METHYLTRANSFERASE 1-3	sterol methyltransferase 1-3, sterol-C24-methyltransferase 1-3	STEROL METHYLTRANSFERASE 1-3		11	LOC_Os11g19140.	 Biochemical character	Os11g0296900 	LOC_Os11g19140.1				GO:0008168 - methyltransferase activity		
22460	LRK7	OsLRk7, LRk7	LECTIN-LIKE RECEPTOR KINASE 7	lectin-like receptor kinase 7	LECTIN-LIKE RECEPTOR KINASE 7		3			Os03g0772600	LOC_Os03g56160.1				GO:0042742 - defense response to bacterium, GO:0002229 - defense response to oomycetes, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004713 - protein tyrosine kinase activity, GO:0030246 - carbohydrate binding, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity		
22461	TCF	OsTCF	TERNARY COMPLEX FACTOR	ternary complex factor	TERNARY COMPLEX FACTOR		8			Os08g0515700	LOC_Os08g40420.1, LOC_Os08g40420.2						
22462	ADSS	OsAdSS, AdSS, ASS2, OsASS2	ADENYLOSUCCINATE SYNTHETASE	adenylosuccinate synthetase, SAMP synthetase 2	ADENYLOSUCCINATE SYNTHETASE		3	Q10R17. GO:0044208: 'de novo' AMP biosynthetic process.	 Biochemical character	Os03g0174500	LOC_Os03g07840.1				GO:0005525 - GTP binding, GO:0009507 - chloroplast, GO:0046040 - IMP metabolic process, GO:0000287 - magnesium ion binding, GO:0005737 - cytoplasm, GO:0004019 - adenylosuccinate synthase activity		
22463	TCM1	OsTCM1	THERMOSENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 1	thermosensitive chlorophyll-deficient mutant 1		tcm1	1	LOC_Os01g56350. Q0JIZ1. a chloroplast-targeted TAC protein. GO:0090228: positive regulation of red or far-red light signaling pathway.	 Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0769900	LOC_Os01g56350.1, LOC_Os01g56350.2, LOC_Os01g56350.3				GO:0005634 - nucleus, GO:0009508 - plastid chromosome, GO:0009507 - chloroplast, GO:0009416 - response to light stimulus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0042793 - transcription from plastid promoter, GO:0009409 - response to cold, GO:0009658 - chloroplast organization	TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000303 - cold tolerance, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	
22464	PEPR2	OsPEPR2	PEP RECEPTOR 2	Pep receptor 2	PEP RECEPTOR 2		8	a rice homolog of Arabidopsis PEPRs.		Os08g0446400	LOC_Os08g34650.1, LOC_Os08g34650.2				GO:0004672 - protein kinase activity, GO:0046777 - protein amino acid autophosphorylation, GO:0009506 - plasmodesma, GO:0016021 - integral to membrane		
22465	PEP1	OsPep1, Pep1, OsPROPEP1, PROPEP1	PLANT ELICITOR PEPTIDE 1	plant elicitor peptide 1	PLANT ELICITOR PEPTIDE 1		4			Os04g0638700	LOC_Os04g54590.1, LOC_Os04g54590.2						
22466	PEP2	OsPep2, Pep2, OsPROPEP2, PROPEP2	PLANT ELICITOR PEPTIDE 2	plant elicitor peptide 2	PLANT ELICITOR PEPTIDE 2		8			Os08g0172800	LOC_Os08g07600.1						
22467	PEP3	OsPep3, Pep3, OsPROPEP3, PROPEP3	PLANT ELICITOR PEPTIDE 3	plant elicitor peptide 3	PLANT ELICITOR PEPTIDE 3		8	CI443705.	 Tolerance and resistance,  Tolerance and resistance - Insect resistance	Os08g0173300	LOC_Os08g07660.1				GO:0051501 - diterpene phytoalexin metabolic process, GO:0009625 - response to insect, GO:0009611 - response to wounding, GO:0080027 - response to herbivore	TO:0002671 - momilactone B content, TO:0000261 - insect damage resistance	
22468	PEP4	OsPep4, Pep4, OsPROPEP4, PROPEP4	PLANT ELICITOR PEPTIDE 4	plant elicitor peptide 4	PLANT ELICITOR PEPTIDE 4		8		 Tolerance and resistance - Insect resistance,  Tolerance and resistance	Os08g0173600	LOC_Os08g07690.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009625 - response to insect, GO:0080027 - response to herbivore	TO:0000172 - jasmonic acid sensitivity, TO:0000261 - insect damage resistance	
22469	PEP5	OsPep5, Pep5, OsPROPEP5, PROPEP5	PLANT ELICITOR PEPTIDE 5	plant elicitor peptide 5	PLANT ELICITOR PEPTIDE 5		8	LOC_Os08g07640.1		Os08g0173200	LOC_Os08g07640.1						
22470	PEP6	OsPep6, Pep6, OsPROPEP6, PROPEP6	PLANT ELICITOR PEPTIDE 6	plant elicitor peptide 6	PLANT ELICITOR PEPTIDE 6		8			Os08g0173000	LOC_Os08g07630.1						
22471	CDS5	OsCDS5, OsVTE5, VTE5	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 5	Cytidinediphosphate-diacylglycerol synthase 5, phytol kinase, VITAMIN E 5	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 5	cds5	1	Q5N9J9. GO:0090332: stomatal closure. TO:0020095: stomatal process related trait.	 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0832000	LOC_Os01g61560.1, LOC_Os01g61560.2, LOC_Os01g61560.3				GO:0006970 - response to osmotic stress, GO:0055091 - phospholipid homeostasis, GO:0016301 - kinase activity, GO:0010189 - vitamin E biosynthetic process, GO:0010027 - thylakoid membrane organization, GO:0009416 - response to light stimulus, GO:0009414 - response to water deprivation, GO:0010148 - transpiration, GO:0009658 - chloroplast organization	TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000095 - osmotic response sensitivity, TO:0000326 - leaf color, TO:0000075 - light sensitivity, TO:0000276 - drought tolerance, TO:0002715 - chloroplast development trait	
22472	CDS1	OsCDS1	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 1	Cytidinediphosphate-diacylglycerol synthase 1	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 1												
22473	CDS2	OsCDS2	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 2	Cytidinediphosphate-diacylglycerol synthase 2	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 2												
22474	CDS3	OsCDS3	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 3	Cytidinediphosphate-diacylglycerol synthase 3	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 3												
22475	CDS4	OsCDS4	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 4	Cytidinediphosphate-diacylglycerol synthase 4	CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 4												
22476	FSE1		FLOURY SHRUNKEN ENDOSPERM 1	floury shrunken endosperm1		fse1	8	LOC_Os08g01920. Phospholipase-Like Protein Homologous to PA-PLA1.	 Seed - Physiological traits - Storage substances	Os08g0110700	LOC_Os08g01920.1				GO:0009705 - plant-type vacuole membrane, GO:0009590 - detection of gravity, GO:0009660 - amyloplast organization, GO:0004620 - phospholipase activity, GO:0046872 - metal ion binding, GO:0006644 - phospholipid metabolic process, GO:0019252 - starch biosynthetic process, GO:0009960 - endosperm development, GO:0009506 - plasmodesma, GO:0009959 - negative gravitropism	TO:0000104 - floury endosperm, TO:0000602 - total fat content	PO:0007633 - endosperm development stage 
22477	_	XRCC2, OsXRCC2	_			xrcc2	1	GO:1904975: response to bleomycin.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0870201 	LOC_Os01g64990.1, LOC_Os01g64990.2				GO:0045002 - double-strand break repair via single-strand annealing, GO:0016255 - attachment of GPI anchor to protein, GO:0042765 - GPI-anchor transamidase complex, GO:0006302 - double-strand break repair, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
22478	_	qPSR10	_	candidate gene for qPSR10			10	LOC_Os10g34840. Q9FWT5.	 Tolerance and resistance - Stress tolerance	Os10g0490100	LOC_Os10g34840.1				GO:0005576 - extracellular region, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22479	CRR1		CENTROMERIC RETROTRANSPOSONS OF RICE 1	Centromeric Retrotransposons of Rice1				a family of Ty3/gypsy-like retrotransposons.	 Other						GO:0032196 - transposition		
22480	ORF182	orf182, OsFA182, FA182	_	chimeric open reading frame FA182			Mt	chimeric mitochondrial gene. MH027393.1-MH027410.1 (O. rufigopon), MH027411.1 (O. sativa). ORF182 differs from other cloned CMS-related genes, including WA352, ORF79, ORFH79 and WA314 (Xie et al. 2018). CMS is caused by the chimeric open reading frame FA182 that specifically occurs in the mitochondrial genome of CMS-FA (Fujian Abortive cytoplasmic male sterility) rice (Jiang et al. 2022).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0005739 - mitochondrion	TO:0000232 - cytoplasmic male sterility (sensu Oryza), TO:0000245 - pollen free	
22481	LRR-RLK1	OsLRR-RLK1, OsPSKR12, PSKR12	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 1	leucine-rich repeat receptor-like kinase 1, Phytosulfokine Receptor 12	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 1		6		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os06g0691800	LOC_Os06g47650.1				GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0002213 - defense response to insect, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009601 - detection of insect, GO:0010364 - regulation of ethylene biosynthetic process, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0080027 - response to herbivore, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009408 - response to heat, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0000454 - stem borer resistance, TO:0002668 - jasmonic acid content, TO:0000273 - armyworm resistance, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0009005 - root 
22482	_	qHMS7 ORF2	_	QTL for hybrid male sterility on chromosome 7 ORF2			7	MG865761.1, MH377731.1, MH377733.1 (Oryza sativa), MH377730.1, MH377732.1, MH377734.1-MH377756.1 (Oryza rufipogon), MH377729.1 (Oryza officinalis), MH377728.1 (Oryza punctata), MG865762.1 (Oryza meridionalis). ORF2 encodes a toxic genetic element that aborts pollen in a sporophytic manner.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness	Os07g0646400	LOC_Os07g45210.1, LOC_Os07g45210.2					TO:0000218 - pollen abortion type	
22483	_	qHMS7 ORF3, S23-ORF3	_	QTL for hybrid male sterility on chromosome 7 ORF3		ORF3HJX74	7	MG865763.1 (Oryza sativa), MH377757.1, MH377758.1 (Oryza rufipogon). ORF3 encodes an antidote that protects pollen in a gametophytic manner (Yu et al. 2018). one of three putative genes in S23 locus. Sequence analysis revealed that S23 was allelic with qHMS7, and S23-ORF3 was identical to qHMS7-ORF3. O. glumaepatula lacks S23-ORF3. (Fang et al. 2019). PO:0025607: vegetative shoot system.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness	Os07g0646600	LOC_Os07g45194.1				GO:0048653 - anther development	TO:0000218 - pollen abortion type	PO:0001004 - anther development stage 
22484	_	qHMS7 ORF1	_	QTL for hybrid male sterility on chromosome 7 ORF1			7	MG865759.1 (Oryza sativa), MG865760.1 (Oryza meridionalis).		Os07g0646300	LOC_Os07g45195.1						
22485	ART2	OsART2	ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 2	Al resistance transcription factor 2	ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 2	art2	4		 Other,  Tolerance and resistance - Stress tolerance	Os04g0165200	LOC_Os04g08290.1				GO:0010044 - response to aluminum ion, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003676 - nucleic acid binding	TO:0000354 - aluminum sensitivity	PO:0009005 - root 
22486	FTIP7	OsFTIP7, OsC2DP44, C2DP44	FT-INTERACTING PROTEIN 7	C2 Domain-Containing Protein 44	FT-INTERACTING PROTEIN 7	Osftip7-1, Osftip7-2	5	Q60EW9. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Spikelet, flower, glume, awn	Os05g0370600	LOC_Os05g30750.1, LOC_Os05g30750.2, LOC_Os05g30750.3, LOC_Os05g30750.4, LOC_Os05g30750.5, LOC_Os05g30750.6, LOC_Os05g30750.7				GO:0016021 - integral to membrane, GO:0009555 - pollen development, GO:0009901 - anther dehiscence, GO:0009734 - auxin mediated signaling pathway, GO:0010930 - negative regulation of auxin mediated signaling pathway, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane	TO:0000180 - spikelet fertility, TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0001035 - G anther dehiscence stage 
22487	_	OsPLL2, PLL2	_	Pectate lyase-like 2			1	LOC_Os01g62000.	 Biochemical character	Os01g0837100	LOC_Os01g62000.1				GO:0046872 - metal ion binding, GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity		
22488	_	OsPLL3, PLL3	_	Pectate lyase-like 3			2	LOC_Os02g12300. PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0214400	LOC_Os02g12300.1				GO:0010152 - pollen maturation, GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding, GO:0009555 - pollen development, GO:0009845 - seed germination	TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0007057 - 0 seed germination stage 
22489	_	OsPLL4, PLL4, OsPLL4.1, OsPLL4.2	_	Pectate lyase-like 4			4	LOC_Os04g05050. PO:0030123: panicle inflorescence.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os04g0137201	LOC_Os04g05050.1, LOC_Os04g05050.2				GO:0009555 - pollen development, GO:0010152 - pollen maturation	TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0009073 - stigma 
22490	_	OsPLL5, PLL5	_	Pectate lyase-like 5			5	LOC_Os05g22800.	 Biochemical character	Os05g0293500	LOC_Os05g22800.1				GO:0046872 - metal ion binding, GO:0030570 - pectate lyase activity, GO:0045490 - pectin catabolic process		
22491	_	OsPLL6, PLL6	_	Pectate lyase-like 6			6	LOC_Os06g05209.	 Biochemical character	Os06g0144200	LOC_Os06g05209.1				GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding		
22492	_	OsPLL7, PLL7	_	Pectate lyase-like 7			6	LOC_Os06g05260.	 Biochemical character	Os06g0144900	LOC_Os06g05260.1				GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding		
22493	PLL8	OsPLL8	PECTATE LYASE-LIKE 8	Pectate lyase-like 8	PECTATE LYASE-LIKE 8		6		 Biochemical character	Os06g0145000	LOC_Os06g05272						
22494	_	OsPLL9, PLL9	_	Pectate lyase-like 9			6	LOC_Os06g38510. PO:0030123: panicle inflorescence.	 Biochemical character	Os06g0583900	LOC_Os06g38510.1, LOC_Os06g38510.2				GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity, GO:0046872 - metal ion binding		
22495	_	OsPLL10, PLL10	_	Pectate lyase-like 10			6	LOC_Os06g38520.	 Biochemical character	Os06g0584000	LOC_Os06g38520.1						
22496	_	OsPLL11, PLL11	_	Pectate lyase-like 11			8	LOC_Os08g18970.	 Biochemical character	Os08g0286100	LOC_Os08g18970.1				GO:0046872 - metal ion binding, GO:0045490 - pectin catabolic process, GO:0030570 - pectate lyase activity		
22497	CYP94D7	OsCYP94D7	CYTOCHROME P450 94D7	Cytochrome P450 94D7	CYTOCHROME P450 94D7		1		 Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0804400 	LOC_Os01g59020.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009694 - jasmonic acid metabolic process, GO:0010229 - inflorescence development, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding	TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22498	CYP71AC1	OsCYP71AC1	CYTOCHROME P450 71AC1	Cytochrome P450 71AC1	CYTOCHROME P450 71AC1		2	cytochrome P450. BGIOSGA007695. 	 Reproductive organ - panicle,  Biochemical character	Os02g0186900  	LOC_Os02g09400.1				GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22499	CYP92A9	OsCYP92A9, OsCYP71W6, CYP71W6	CYTOCHROME P450 92A9	cytochrome P450 71A1, Cytochrome P450 92A9	CYTOCHROME P450 92A9		9	BGIOSGA030841. cytochrome P450. cytochrome P450 71A1 in Chen et al. 2019. OsCYP71W6 in Sahoo et al. 2023.	 Reproductive organ - panicle,  Coloration - Anthocyanin,  Biochemical character	Os09g0441400   	LOC_Os09g26960.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane, GO:0010229 - inflorescence development, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0046677 - response to antibiotic, GO:0002238 - response to molecule of fungal origin, GO:0009813 - flavonoid biosynthetic process	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22500	_		_				4	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os04g0407900    	LOC_Os04g33370.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0010229 - inflorescence development, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22501	_		_				7	cytochrome P450	 Reproductive organ - panicle,  Biochemical character	Os07g0635300     	LOC_Os07g44130.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22502	CYP71T3	OsCYP71T3	CYTOCHROME P450 71T3	Cytochrome P450 71T3	CYTOCHROME P450 71T3		1	cytochrome P450. BGIOSGA003054.	 Reproductive organ - panicle,  Biochemical character	Os01g0227800      	LOC_Os01g12770.1				GO:0010229 - inflorescence development, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22503	_		_				11	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os11g0289700       	LOC_Os11g18570.1				GO:0055114 - oxidation reduction, GO:0007275 - multicellular organismal development, GO:0010268 - brassinosteroid homeostasis, GO:0016132 - brassinosteroid biosynthetic process, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0010229 - inflorescence development, GO:0016125 - sterol metabolic process	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22504	_		_				10	cytochrome P450	 Biochemical character,  Reproductive organ - panicle	Os10g0486100        	LOC_Os10g34480.1				GO:0020037 - heme binding, GO:0010229 - inflorescence development, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22505	_	PPR	_	Pentatricopeptide repeat (PPR) protein			1		 Reproductive organ - panicle	Os01g0589900	LOC_Os01g40720.1				GO:0008270 - zinc ion binding, GO:0009451 - RNA modification, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22506	_	PPR	_	Pentatricopeptide repeat (PPR) protein			8		 Reproductive organ - panicle	Os08g0402600	LOC_Os08g31110.1				GO:0008270 - zinc ion binding, GO:0010229 - inflorescence development, GO:0005739 - mitochondrion	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22507	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0244400 	LOC_Os07g14100.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22508	_	PPR	_	Pentatricopeptide repeat (PPR) protein			3		 Reproductive organ - panicle	Os03g0363700 	LOC_Os03g24880.1				GO:0005739 - mitochondrion, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22509	_	PPR	_	Pentatricopeptide repeat (PPR) protein			12		 Reproductive organ - panicle	Os12g0552300  	LOC_Os12g36620.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification, GO:0008270 - zinc ion binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22510	_	PPR	_	Pentatricopeptide repeat (PPR) protein			2	A3ABE1.	 Reproductive organ - panicle	Os02g0750400   	LOC_Os02g51480.1				GO:0010229 - inflorescence development, GO:0008380 - RNA splicing, GO:0006417 - regulation of translation, GO:0006397 - mRNA processing, GO:0009507 - chloroplast	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22511	PLS34	PPR, OsPLS34	PLS-TYPE PPR PROTEIN 34	Pentatricopeptide repeat (PPR) protein, PLS-class Pentatricopeptide Repeat Protein 34	PLS-TYPE PPR PROTEIN 34		8		 Reproductive organ - panicle	Os08g0340900    	LOC_Os08g25280.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22512	_	PPR	_	Pentatricopeptide repeat (PPR) protein			10		 Reproductive organ - panicle	Os10g0116000     	LOC_Os10g02650.1				GO:0005739 - mitochondrion, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22513	_	PPR	_	Pentatricopeptide repeat (PPR) protein			11		 Reproductive organ - panicle	Os11g0433101      	LOC_Os11g24530.1				GO:0009451 - RNA modification, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22514	_	PPR	_	Pentatricopeptide repeat (PPR) protein			1		 Reproductive organ - panicle	Os01g0815900       	LOC_Os01g60000.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22515	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0635800        	LOC_Os07g44170.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22516	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0621100         	LOC_Os07g42880.1				GO:0010229 - inflorescence development, GO:0005739 - mitochondrion	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22517	_	PPR	_	Pentatricopeptide repeat (PPR) protein			2		 Reproductive organ - panicle	Os02g0127600          	LOC_Os02g03530.1				GO:0010229 - inflorescence development, GO:0005739 - mitochondrion	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22518	_	PPR	_	Pentatricopeptide repeat (PPR) protein			3		 Reproductive organ - panicle	Os03g0283500           	LOC_Os03g17510.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22519	_	PPR	_	Pentatricopeptide repeat (PPR) protein			2	a salt responsive SOAR1-like PPR gene.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os02g0170000            	LOC_Os02g07360.1				GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010229 - inflorescence development	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000621 - inflorescence development trait	PO:0009006 - shoot system , PO:0001083 - inflorescence development stage , PO:0020104 - leaf sheath , PO:0025034 - leaf 
22520	_	PPR	_	Pentatricopeptide repeat (PPR) protein			7		 Reproductive organ - panicle	Os07g0260000            	LOC_Os07g15640.1				GO:0010229 - inflorescence development, GO:0009451 - RNA modification	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22521	UBP1-5	OsUBP1-5, OsUBP31, UBP31	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-5	ubiquitin-specific processing protease 1-5, Ubiquitin-specific protease 31	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-5		8	OsUBP31 in Ma et al. 2019.	 Biochemical character,  Reproductive organ - panicle	Os08g0527600	LOC_Os08g41580.1				GO:0004843 - ubiquitin-specific protease activity, GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004197 - cysteine-type endopeptidase activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22522	_		_				12		 Reproductive organ - panicle	Os12g0210601					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22523	UBP1-8	OsUBP1-8, OsUBP33, UBP33	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-8	Ubiquitin carboxyl-terminal hydrolase, ubiquitin-specific processing protease 1-8, Ubiquitin-specific protease 33	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-8		8	OsUBP33 in Ma et al. 2019.	 Biochemical character,  Reproductive organ - panicle	Os08g0528100	LOC_Os08g41630.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0009029 - stamen , PO:0001083 - inflorescence development stage 
22524	_		_	Formin-like protein			3		 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os03g0725200	LOC_Os03g51530.1				GO:0010114 - response to red light, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000158 - red light sensitivity	PO:0001083 - inflorescence development stage 
22525	_		_				10		 Reproductive organ - panicle	Os10g0366400	LOC_Os10g22170.1, LOC_Os10g22170.2				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22526	_		_	"\"Protein CHUP1, chloroplastic\""			3		 Reproductive organ - panicle	Os03g0172100	LOC_Os03g07590.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22527	_		_	Pyruvate decarboxylase			5		 Reproductive organ - panicle	Os05g0469701					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22528	_		_	4-Coumarate-CoA ligase			4		 Reproductive organ - panicle	Os04g0310900					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22529	_		_				5	Transcription factor	 Reproductive organ - panicle	Os05g0162800	LOC_Os05g07010.1, LOC_Os05g07010.2				GO:0010229 - inflorescence development, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22530	_		_				6		 Reproductive organ - panicle	Os06g0100550					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22531	_		_				7		 Reproductive organ - panicle	Os07g0646200	LOC_Os07g45180.1				GO:0010229 - inflorescence development, GO:0008270 - zinc ion binding	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22532	_		_				9		 Reproductive organ - panicle	Os09g0513900	LOC_Os09g33882.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22533	_		_				12		 Reproductive organ - panicle	Os12g0234000	LOC_Os12g13174.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22534	_		_	ABC transporter B family member			1		 Reproductive organ - panicle	Os01g0290800					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22535	_		_				6		 Reproductive organ - panicle	Os06g0361500					GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22536	_		_	Metallopeptidase family M24 containing protein			12		 Reproductive organ - panicle	Os12g0446500	LOC_Os12g26030.1				GO:0031491 - nucleosome binding, GO:0042393 - histone binding, GO:0006368 - RNA elongation from RNA polymerase II promoter, GO:0032968 - positive regulation of RNA elongation from RNA polymerase II promoter, GO:0010229 - inflorescence development, GO:0035101 - FACT complex, GO:0034724 - DNA replication-independent nucleosome organization	TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
22537	GFD1	OsGFD1	GRAIN FILLING DURATION 1	MATE efflux family protein, grain filling duration mutant 1		gfd1	3	GO:1905428: regulation of plant organ formation. GO:0052575: carbohydrate localization. PO:0030123: panicle inflorescence. PO:0030104: caryopsis fruit.	 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Endosperm	Os03g0229500	LOC_Os03g12790.1				GO:0005886 - plasma membrane, GO:0009960 - endosperm development, GO:0010581 - regulation of starch biosynthetic process, GO:0008643 - carbohydrate transport, GO:0005794 - Golgi apparatus, GO:0005381 - iron ion transmembrane transporter activity, GO:0010431 - seed maturation, GO:0016021 - integral to membrane, GO:0017119 - Golgi transport complex, GO:0005770 - late endosome, GO:0010015 - root morphogenesis, GO:0006970 - response to osmotic stress, GO:0009624 - response to nematode, GO:0009408 - response to heat, GO:0009646 - response to absence of light, GO:0010229 - inflorescence development, GO:0009737 - response to abscisic acid stimulus, GO:0055072 - iron ion homeostasis, GO:0006855 - multidrug transport, GO:0015297 - antiporter activity, GO:0015238 - drug transporter activity	TO:0000396 - grain yield, TO:0000291 - carbohydrate content, TO:0002759 - grain number, TO:0000397 - grain size, TO:0000300 - glucose content, TO:0000447 - filled grain number, TO:0000653 - seed development trait, TO:0000137 - days to heading, TO:0000575 - endosperm related trait, TO:0002655 - starch grain size, TO:0002656 - starch grain shape, TO:0000487 - endosperm color, TO:0000328 - sucrose content, TO:0000696 - starch content, TO:0000621 - inflorescence development trait, TO:0006005 - fructose content	PO:0020104 - leaf sheath , PO:0001083 - inflorescence development stage , PO:0007632 - seed maturation stage , PO:0000034 - vascular system , PO:0000039 - shoot axis vascular system , PO:0006000 - caryopsis hull , PO:0009080 - spikelet rachilla , PO:0005028 - inflorescence vascular system , PO:0005017 - flower vascular system , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0007633 - endosperm development stage 
22538	_	RLK	_	membrane-anchored receptor-like kinases			7	LOC_Os07g03810.	 Tolerance and resistance - Stress tolerance	Os07g0130100	LOC_Os07g03810.1				GO:0016021 - integral to membrane, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0002229 - defense response to oomycetes, GO:0042742 - defense response to bacterium, GO:0030246 - carbohydrate binding, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance	
22539	_	RLK	_	membrane-anchored receptor-like kinase			8	LOC_Os08g03020.	 Tolerance and resistance - Stress tolerance	Os08g0124500	LOC_Os08g03020.1				GO:0005886 - plasma membrane, GO:0006952 - defense response, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0002229 - defense response to oomycetes, GO:0016021 - integral to membrane, GO:0030246 - carbohydrate binding, GO:0042742 - defense response to bacterium, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity	TO:0006001 - salt tolerance	
22540	EBL1	qSSR8, OsEBL1, ES43, OsPHD37, PHD37	EBS-LIKE 1	candidate gene for qSSR8, EARLY BOLTING IN SHORT DAYS-like 1, EBS-like 1, Plant homeo-domain finger protein 37, PHD finger protein 37	EBS-LIKE 1		8	BGIOSGA028692. B8BAV1 (indica). an Arabidopsis EBS homolog.	 Tolerance and resistance - Stress tolerance	Os08g0421900	LOC_Os08g32620.4, LOC_Os08g32620.3, LOC_Os08g32620.2, LOC_Os08g32620.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0009409 - response to cold, GO:0003682 - chromatin binding	TO:0000303 - cold tolerance	
22541	_	qSSR9-1, OsRING215, RING215	_	candidate gene for qSSR9-1, RING-type E3 ubiquitin ligase 215			9	LOC_Os09g25190. GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os09g0419500	LOC_Os09g25190.1				GO:0000151 - ubiquitin ligase complex, GO:0031624 - ubiquitin conjugating enzyme binding, GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process, GO:0000209 - protein polyubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22542	2ODD11	OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11, M3H, OsM3H	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 11	2-oxoglutarate-dependent dioxygenase 11	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 11		10	melatonin 2-hydroxylase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0558700	LOC_Os10g40934.9, LOC_Os10g40934.3, LOC_Os10g40934.2, LOC_Os10g40934.12, LOC_Os10g40934.11, LOC_Os10g40934.10, LOC_Os10g40934.1				GO:0009741 - response to brassinosteroid stimulus, GO:0042442 - melatonin catabolic process, GO:0009646 - response to absence of light, GO:0007623 - circadian rhythm, GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity	TO:0000075 - light sensitivity, TO:0002677 - brassinosteroid sensitivity	
22543	2ODD19	OsODD19, ODD19, 2-ODD19, Os2-ODD19, Os2ODD19, OsF3H7, F3H7	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 19	2-oxoglutarate-dependent dioxygenase 19, flavanone 3-hydroxylase 7	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 19		8	melatonin 2-hydroxylase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0480200	LOC_Os08g37456.1, LOC_Os08g37456.2				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0009005 - root 
22544	_	OsNABP, NABP	_	Nucleic Acid Binding Protein			6			Os06g0215200 	LOC_Os06g11170.1, LOC_Os06g11170.2				GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0000398 - nuclear mRNA splicing, via spliceosome		
22545	_		_				9	P8 		Os09g0560400 	LOC_Os09g38750.1				GO:0016021 - integral to membrane		
22546	_	OsEIN2.2, EIN2.2	_	Ethylene-insensitive protein 2.2			3	LOC_Os03g49400.		Os03g0700800	LOC_Os03g49400.1				GO:0005384 - manganese ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009873 - ethylene mediated signaling pathway, GO:0015086 - cadmium ion transmembrane transporter activity		
22547	_	OsEIN2.3, EIN2.3	_	Ethylene-insensitive protein 2.3			7			Os07g0157401	LOC_Os07g06300.1				GO:0016020 - membrane, GO:0046873 - metal ion transmembrane transporter activity		
22548	_	OsEIN2.4, EIN2.4	_	Ethylene-insensitive protein 2.4			7			Os07g0156732	LOC_Os07g06190.1				GO:0046873 - metal ion transmembrane transporter activity, GO:0016020 - membrane		
22550	_		_	RPP13-like protein 3			11	NBS-LRR type gene.		Os11g0590700	LOC_Os11g37860.1				GO:0043531 - ADP binding		
22551	ILL8	OsILL8, OsAH4, AH4	ILR1-LIKE 8	amidohydrolase 4, ILR1-like 8	ILR1-LIKE 8		7	Q8H3C8.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0249800	LOC_Os07g14600.1				GO:0016787 - hydrolase activity, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
22552	_		_				3			Os03g0629800 	LOC_Os03g43100.1, LOC_Os03g43100.2						
22553	_		_				1			Os01g0965300  							
22554	_		_				3			Os03g0105500   	LOC_Os03g01520.1						
22555	_		_				2			Os02g0269650    							
22556	_		_				10			Os10g0340100     	LOC_Os10g19910.1						
22557	_		_	Putative disease resistance protein RGA4			4			Os04g0112100      	LOC_Os04g02120.1				GO:0043531 - ADP binding		
22558	MRLK61	OsMRLK61	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 61	LRR receptor-like serine/threonine-protein kinase	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 61		9			Os09g0356800       	LOC_Os09g19229.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity		
22559	_		_				4			Os04g0397800        							
22560	_		_				12			Os12g0543800         	LOC_Os12g35910.1						
22561	_		_				7			Os07g0511400          	LOC_Os07g32710.1						
22562	_		_				10			Os10g0142700           							
22563	_		_				1			Os01g0204900            	LOC_Os01g10770.1						
22564	_	KIF19, OsKIF19	_	Kinesin-like protein KIF19			1	Q0JLE4. GO:0061673: mitotic spindle astral microtubule. GO:1990023: mitotic spindle midzone.		Os01g0605500 	LOC_Os01g42070.1				GO:0005524 - ATP binding, GO:0007019 - microtubule depolymerization, GO:0008574 - plus-end-directed microtubule motor activity, GO:0000070 - mitotic sister chromatid segregation, GO:0005871 - kinesin complex, GO:0005874 - microtubule, GO:0005634 - nucleus, GO:0007018 - microtubule-based movement, GO:0003777 - microtubule motor activity, GO:0008017 - microtubule binding, GO:0016887 - ATPase activity		
22565	KCS12	OsKCS12	3-KETOACYL-COA SYNTHASE 12	3-Ketoacyl-CoA synthase 12	3-KETOACYL-COA SYNTHASE 12		4	GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0116800             	LOC_Os04g02640.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016021 - integral to membrane, GO:0006633 - fatty acid biosynthetic process, GO:0046686 - response to cadmium ion		PO:0009010 - seed 
22566	_		_				7			Os07g0162450 	LOC_Os07g06834.1						
22567	_		_	Disheveled-associated activator of morphogenesis 1, glutathione S-transferase T3			12			Os12g0169300  	LOC_Os12g07180.1						
22568	_		_				12			Os12g0228500   	LOC_Os12g12690.1						
22569	_		_	Glutathione S-transferase T3			1		 Biochemical character	Os01g0872900    	LOC_Os01g65240.1				GO:0016788 - hydrolase activity, acting on ester bonds		
22570	_		_				1			Os01g0698800     	LOC_Os01g50350.1, LOC_Os01g50350.2						
22571	_		_				11			Os11g0477400       	LOC_Os11g28910.1						
22572	_		_				2			Os02g0441000        							
22573	_		_	Transcription initiation factor IIE subunit alpha isoform X1			12	GO:0000993: RNA polymerase II complex binding. GO:0001097: TFIIH-class transcription factor complex binding. GO:0001113: transcriptional open complex formation at RNA polymerase II promoter.	 Other	Os12g0140266         	LOC_Os12g04595.1				GO:0043565 - sequence-specific DNA binding, GO:0005673 - transcription factor TFIIE complex		
22574	_		_				1			Os01g0137150         							
22575	_	PRX2, OsPRX2	_	Peroxidase 2			3		 Biochemical character	Os03g0434800	LOC_Os03g32050.1				GO:0005576 - extracellular region, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0042744 - hydrogen peroxide catabolic process		
22576	_	CYP450	_	cytochrome P450			10		 Biochemical character	Os10g0513900	LOC_Os10g36980.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen		
22577	PMEI46	PMEI, OsPMEI46	PECTIN METHYLESTERASE INHIBITOR 46	PECTIN METHYLESTERASE INHIBITOR PROTEIN, PME inhibitor 46, pectin methylesterase inhibitor 46	PECTIN METHYLESTERASE INHIBITOR 46		12	INVINH-related sequence.	 Biochemical character	Os12g0283400	LOC_Os12g18560.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
22578	DTM1	OsDTM1	DEFECTIVE TAPETUM AND MEIOCYTES 1			dtm1, dtm1-1, dtm1-2	7	LOC_Os07g43010. Q7XI45. GO:0140013: meiotic nuclear division.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance	Os07g0622900	LOC_Os07g43010.1				GO:0005789 - endoplasmic reticulum membrane, GO:0008233 - peptidase activity, GO:0006996 - organelle organization, GO:0005787 - signal peptidase complex, GO:0016021 - integral to membrane, GO:0048653 - anther development, GO:0007029 - endoplasmic reticulum organization, GO:0009408 - response to heat, GO:0048658 - tapetal layer development, GO:0009751 - response to salicylic acid stimulus, GO:0009555 - pollen development, GO:0006465 - signal peptide processing	TO:0000259 - heat tolerance, TO:0006007 - polysaccharide content, TO:0000437 - male sterility	PO:0025545 - anther wall tapetum cell , PO:0001004 - anther development stage , PO:0000002 - anther wall 
22579	GAS2	OsGAS2	_	glucosidase II beta subunit, glucosidase II b subunit			1	Q5NBP9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0276800	LOC_Os01g16970.1, LOC_Os01g16970.2, LOC_Os01g16970.3				GO:0006970 - response to osmotic stress, GO:0005783 - endoplasmic reticulum, GO:0006491 - N-glycan processing, GO:0042742 - defense response to bacterium, GO:0034976 - response to endoplasmic reticulum stress, GO:0010506 - regulation of autophagy, GO:0043067 - regulation of programmed cell death, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
22580	_	HSP40	_	heat shock protein 40, TPR-containing HSP40			2		 Tolerance and resistance - Stress tolerance	Os02g0100300	LOC_Os02g01030.1, LOC_Os02g01030.2, LOC_Os02g01030.3, LOC_Os02g01030.4				GO:0046686 - response to cadmium ion, GO:0009408 - response to heat, GO:0051085 - chaperone mediated protein folding requiring cofactor, GO:0046983 - protein dimerization activity, GO:0005737 - cytoplasm, GO:0005829 - cytosol	TO:0000259 - heat tolerance	
22581	ARE1	OsARE1	ABNORMAL CYTOKININ RESPONSE 1-1 REPRESSOR 1	abnormal cytokinin response 1-1 repressor1, abnormal cytokinin response 1-1 repressor 1, abc1-1 repressor 1		are1, are1-1, are1-2, ARE1-9311, ARE1-MH63, ARE1-NPB	8	LOC_Os08g12780. a genetic suppressor of a rice fd-gogat mutant defective.	 Character as QTL - Yield and productivity	Os08g0224300	LOC_Os08g12780.1, LOC_Os08g12780.2, LOC_Os08g12780.3, LOC_Os08g12780.4, LOC_Os08g12780.5				GO:0016021 - integral to membrane, GO:0048573 - photoperiodism, flowering, GO:0009507 - chloroplast, GO:0010150 - leaf senescence, GO:0006808 - regulation of nitrogen utilization	TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0000396 - grain yield, TO:0000326 - leaf color, TO:0000137 - days to heading	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
22582	SNI1	OsSNI1	_	"\"Suppressor of NPR1-1, Inducible 1\""			2	LOC_Os02g20870. GO:0044212: transcription regulatory region DNA binding.		Os02g0312800	LOC_Os02g20870.1, LOC_Os02g20870.2				GO:0005634 - nucleus, GO:0010113 - negative regulation of systemic acquired resistance, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0030915 - Smc5-Smc6 complex, GO:0016570 - histone modification, GO:0006974 - response to DNA damage stimulus		
22583	WSL5	OsWSL5	WHITE STRIPE LEAF 5	white stripe leaf 5		wsl5	4	TO:0006060: leaf chlorosis. a chloroplast-targeted pentatricopeptide repeat protein.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Coloration - Others,  Tolerance and resistance - Stress tolerance	Os04g0684500	LOC_Os04g58780.1, LOC_Os04g58780.2				GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0042254 - ribosome biogenesis, GO:0003723 - RNA binding, GO:0009880 - embryonic pattern specification, GO:0048366 - leaf development, GO:0008380 - RNA splicing	TO:0000293 - chlorophyll-a content, TO:0000496 - carotenoid content, TO:0000069 - variegated leaf, TO:0000303 - cold tolerance, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content	
22584	ATX1	OsATX1, OsaATX1, OsHMP37, HMP37	ANTIOXIDANT PROTEIN 1	Antioxidant Protein1, Heavy metal-associated protein 37	ANTIOXIDANT PROTEIN 1	osatx1	8	TO:0006052: copper concentration. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os08g0205400	LOC_Os08g10480.1				GO:0012505 - endomembrane system, GO:0030001 - metal ion transport, GO:0006825 - copper ion transport, GO:0005737 - cytoplasm, GO:0046686 - response to cadmium ion, GO:0046872 - metal ion binding, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0046688 - response to copper ion, GO:0010288 - response to lead ion	TO:0000080 - micronutrient sensitivity, TO:0000021 - copper sensitivity	PO:0000036 - leaf vascular system , PO:0005020 - vascular bundle , PO:0020124 - root stele , PO:0005772 - exodermis , PO:0020121 - lateral root 
22585	PHL3	OsPHL3	PHR1 LIKE 3	PHR1 like3, PHOSPHATE STARVATION RESPONSE 1-like 3	PHR1 LIKE 3	osphl3	9	LOC_Os09g12750. a G2-like family transcription factor.	 Reproductive organ - Heading date,  Other	Os09g0299000	LOC_Os09g12750.1, LOC_Os09g12750.2				GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0003677 - DNA binding, GO:0007623 - circadian rhythm, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0025034 - leaf 
22586	VAL1	OsVAL1, PurD, OsPurD	VIRESCENT-ALBINO LEAF 1			val1	8	LOC_Os08g09210. a phosphoribosylamine-glycine ligase.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Biochemical character,  Coloration - Others	Os08g0191200	LOC_Os08g09210.1, LOC_Os08g09210.2				GO:0006164 - purine nucleotide biosynthetic process, GO:0048366 - leaf development, GO:0090056 - regulation of chlorophyll metabolic process, GO:0009113 - purine base biosynthetic process, GO:0004637 - phosphoribosylamine-glycine ligase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0043476 - pigment accumulation, GO:0051302 - regulation of cell division, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0002715 - chloroplast development trait, TO:0000370 - leaf width, TO:0000293 - chlorophyll-a content, TO:0000495 - chlorophyll content, TO:0000295 - chlorophyll-b content, TO:0000326 - leaf color, TO:0000496 - carotenoid content	PO:0001050 - leaf development stage 
22587	LAIR		LRK ANTISENSE INTERGENIC RNA	LRK Antisense Intergenic RNA, Long noncoding RNA LAIR			2	JX512719-JX512728. GO:0080182: histone H3-K4 trimethylation.	 Other,  Character as QTL - Yield and productivity	Os02g0154100					GO:0016570 - histone modification, GO:0016571 - histone methylation, GO:0043984 - histone H4-K16 acetylation, GO:0016569 - covalent chromatin modification, GO:0010468 - regulation of gene expression	TO:0000396 - grain yield, TO:0000152 - panicle number, TO:0006032 - panicle size	
22588	NRTP1	OsNRTP1	NECROTIC ROOT TIP 1	Necrotic root tip 1		nrtp1-D	12	LOC_Os12g17410. a CC-NB-LRR-type protein. GO:0035732: nitric oxide storage.	 Tolerance and resistance,  Vegetative organ - Root	Os12g0272800	LOC_Os12g17410.1				GO:0048364 - root development, GO:0043531 - ADP binding, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0008219 - cell death	TO:0000652 - leaf necrosis, TO:0000172 - jasmonic acid sensitivity, TO:0000656 - root development trait, TO:0000207 - plant height, TO:0000227 - root length	PO:0007520 - root development stage , PO:0009005 - root 
22589	KCH2	OsKCH2	_	Kinesins with a calponin homology domain 2, Kinesins with CH domain 2		kch2	4	a plant-specific kinesin-14. a preprophase band-associated kinesin-14.		Os04g0467901	LOC_Os04g39280.1, LOC_Os04g39280.2				GO:0060001 - minus-end directed microfilament motor activity, GO:0003777 - microtubule motor activity, GO:0005524 - ATP binding, GO:0005874 - microtubule, GO:0007018 - microtubule-based movement, GO:0016887 - ATPase activity, GO:0008017 - microtubule binding, GO:0005871 - kinesin complex		
22590	MS188	OsMYB80, MYB80, OsMS188, Os2R_MYB44, 2R_MYB44, OsMYB103/OsMYB80/OsMS188/BM1, OsMYB103, MYB103	MALE STERILE 188	MYB80 transcription factor, male-sterile 188, R2R3-MYB Transcription Factor 44	MYB80 TRANSCRIPTION FACTOR	osmyb80, osms188, osms188-1, osms188-2, osmyb103	4	Q7XQN1. NCBI Sequence Read Archive under accession numbers SRP058039 and SRP196452. OsMYB103 in Zhang et al. 2023.GO:0044212: transcription regulatory region DNA binding. an AtMYB80 homolog. TO:1000022:  anther morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Coloration - Anthocyanin	Os04g0470600	LOC_Os04g39470.1				GO:0010208 - pollen wall assembly, GO:0080110 - sporopollenin biosynthetic process, GO:0005634 - nucleus, GO:0051321 - meiotic cell cycle, GO:0048653 - anther development, GO:0048658 - tapetal layer development, GO:0009555 - pollen development, GO:0030154 - cell differentiation, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000421 - pollen fertility, TO:0000437 - male sterility, TO:0000214 - anther shape, TO:0000531 - anther length	PO:0001004 - anther development stage , PO:0006204 - sporocyte , PO:0009066 - anther , PO:0025543 - tapetum cell , PO:0001007 - pollen development stage 
22591	PMR	OsPMR, OsRING154, RING154	POLLEN MITOSIS RELATIVE	Pollen Mitosis Relative, RING-type E3 ubiquitin ligase 154		pmr-1, pmr-2	5	GO:0140014: mitotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility	Os05g0420800	LOC_Os05g34780.1				GO:0051052 - regulation of DNA metabolic process, GO:0009555 - pollen development, GO:0005634 - nucleus	TO:0000180 - spikelet fertility, TO:0000421 - pollen fertility	PO:0009066 - anther , PO:0001007 - pollen development stage 
22592	GAUT4	OsGAUT4, OsGAUT6, GAUT6	GALACTURONOSYLTRANSFERASE 4	Galacturonosyltransferase 4, galacturonosyltransferase 6	GALACTURONOSYLTRANSFERASE 4		8	GO:0071555: cell wall organization. OsGAUT6 in Kong et al. 2019.	 Biochemical character	Os08g0327100	LOC_Os08g23780.1				GO:0000139 - Golgi membrane, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0045489 - pectin biosynthetic process		
22593	DSSR1	OsDSSR1	DROUGHT AND SALT STRESS RESPONSE 1	drought and salt stress response-1			9	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os09g0109600	LOC_Os09g02180.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0006002 - proline content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000340 - total soluble sugar content	PO:0009005 - root , PO:0009047 - stem , PO:0020141 - stem node , PO:0025034 - leaf 
22594	CUL1-2	OsCUL1-2	CULLIN 1-2	Cullin 1-2	CULLIN 1-2		5		 Tolerance and resistance - Stress tolerance	Os05g0149600	LOC_Os05g05700.1, LOC_Os05g05700.2				GO:0016567 - protein ubiquitination, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0019005 - SCF ubiquitin ligase complex, GO:0031625 - ubiquitin protein ligase binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009010 - seed 
22595	CUL1-3	OsCUL1-3	CULLIN 1-3	Cullin 1-3	CULLIN 1-3		1		 Tolerance and resistance - Stress tolerance	Os01g0369200	LOC_Os01g27160.1				GO:0019005 - SCF ubiquitin ligase complex, GO:0016567 - protein ubiquitination, GO:0031625 - ubiquitin protein ligase binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009010 - seed 
22596	PKPA1	OsPKpa1, OsPK2, PK2	PYRUVATE KINASE P ALPHA 1	Pyruvate kinase palpha1, plastidic PK alpha 1, Pyruvate kinase 2	PYRUVATE KINASE P ALPHA 1		7	OsPK2 in Yang et al. 2022, Dong  et al. 2022.	 Seed - Physiological traits - Storage substances,  Biochemical character	Os07g0181000	LOC_Os07g08340.1, LOC_Os07g08340.2				GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0019252 - starch biosynthetic process, GO:0008610 - lipid biosynthetic process, GO:0009501 - amyloplast, GO:0030955 - potassium ion binding, GO:0004743 - pyruvate kinase activity, GO:0009570 - chloroplast stroma, GO:0016301 - kinase activity, GO:0000287 - magnesium ion binding	TO:0000696 - starch content, TO:0000587 - endosperm quality, TO:0000104 - floury endosperm	PO:0009089 - endosperm 
22597	PPS1	OsPPS1	_				12	a DYW motif-containing PPR protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os12g0552300  	LOC_Os12g36620.1				GO:0009451 - RNA modification, GO:0008270 - zinc ion binding	TO:0000053 - pollen sterility	
22598	DRZ1	OsDRZ1, DLN90, OsDLN90	DROUGHT RESPONSIVE ZINC FINGER PROTEIN 1	drought responsive zinc finger protein 1, DLN repressor 90, DLN motif protein 90	DROUGHT RESPONSIVE ZINC FINGER PROTEIN 1		3		 Tolerance and resistance - Stress tolerance	Os03g0437100	LOC_Os03g32220.1				GO:0009414 - response to water deprivation, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus, GO:0045892 - negative regulation of transcription, DNA-dependent	TO:0006002 - proline content, TO:0000276 - drought tolerance	
22599	STD1	OsSTD1	STEMLESS DWARF 1	Stemless Dwarf 1		std1	2	Q6K990. a phragmoplast-associated kinesin-related protein. a homolog of AtPAKRP2. GO:0099402: plant organ development.	 Vegetative organ - Culm	Os02g0810200	LOC_Os02g56540.1				GO:0003777 - microtubule motor activity, GO:0051301 - cell division, GO:0008017 - microtubule binding, GO:0009524 - phragmoplast, GO:0000910 - cytokinesis, GO:0051326 - telophase, GO:0000919 - cell plate formation, GO:0016887 - ATPase activity, GO:0008574 - plus-end-directed microtubule motor activity, GO:0005524 - ATP binding, GO:0007018 - microtubule-based movement, GO:0005871 - kinesin complex, GO:0005874 - microtubule	TO:0000207 - plant height	
22600	PLS3	OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1	PRECOCIOUS LEAF SENESCENCE 3	precocious leaf senescence3, beta-1, 6-N-acetylglucosaminyl transferase, spotted-leaf 21, premature senescence leaf, core 2/I branching beta-1, 6-N- acetylglucosaminyl transferase-1		ospls3, spl21, psl	12	DUF266-containing protein. GT14-like family. GO:1900055: regulation of leaf senescence. PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0618800	LOC_Os12g42420.1				GO:0031348 - negative regulation of defense response, GO:0005794 - Golgi apparatus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042542 - response to hydrogen peroxide, GO:0012501 - programmed cell death, GO:0009694 - jasmonic acid metabolic process, GO:0042742 - defense response to bacterium, GO:0008375 - acetylglucosaminyltransferase activity, GO:0009736 - cytokinin mediated signaling, GO:0009873 - ethylene mediated signaling pathway, GO:0009735 - response to cytokinin stimulus, GO:0006486 - protein amino acid glycosylation, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane	TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000249 - leaf senescence, TO:0002668 - jasmonic acid content, TO:0000167 - cytokinin sensitivity, TO:0000496 - carotenoid content, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath 
22601	FLO13	OsNDUFA9, NDUFA9	FLOURY ENDOSPERM 3	Mitochondrial complex I accessory subunit OsNDUFA9, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, floury endosperm 3			2	GO:1901006: ubiquinone-6 biosynthetic process.	 Biochemical character,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Embryo	Os02g0816800	LOC_Os02g57180.2, LOC_Os02g57180.1				GO:0003954 - NADH dehydrogenase activity, GO:0005747 - mitochondrial respiratory chain complex I, GO:0009790 - embryonic development, GO:0009651 - response to salt stress, GO:0050662 - coenzyme binding, GO:0005739 - mitochondrion, GO:0019252 - starch biosynthetic process	TO:0002658 - starch grain synthesis, TO:0000592 - 1000-dehulled grain weight, TO:0000104 - floury endosperm	
22602	DUA1	OsDUA1	_				9	RNA editing factor. GO:1900865: chloroplast RNA modification.	 Tolerance and resistance - Stress tolerance	Os09g0474051	LOC_Os09g29825.1				GO:0008270 - zinc ion binding, GO:0009451 - RNA modification, GO:0009409 - response to cold, GO:0009658 - chloroplast organization	TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait	
22603	TGW3	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, OsTGW3, OsGSK5/OsSK41, OsSK41/OsGSK5, GL3.3/TGW3	THOUSAND GRAIN WEIGHT 3	GSK3/SHAGGY-Like Kinase 41, QTL FOR THOUSAND GRAIN WEIGHT ON CHROMOSOME 3, GSK3-like Kinase 5, Glycogen Synthase Kinase-like 5, thousand grain weight 3	SHAGGY-LIKE KINASE 41	gl3.3Aus, gl3.3Jap, tgw3-70, sk41, sk41.1, sk41.2	3	a GSK3/SHAGGY-like kinase clade IV member. GEO DataSets: GSE98924. an orthologue of a Medicago GSK3. TO:0000919: grain weight. PO:0030123: panicle inflorescence.	 Seed - Morphological traits,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Seed - Physiological traits - Storage substances,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0841800	LOC_Os03g62500.1				GO:0005975 - carbohydrate metabolic process, GO:0009741 - response to brassinosteroid stimulus, GO:0009651 - response to salt stress, GO:0032885 - regulation of polysaccharide biosynthetic process, GO:0005634 - nucleus, GO:0010233 - phloem transport, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0042742 - defense response to bacterium, GO:0005982 - starch metabolic process, GO:0005524 - ATP binding, GO:0009742 - brassinosteroid mediated signaling, GO:0004674 - protein serine/threonine kinase activity, GO:0048316 - seed development	TO:0000734 - grain length, TO:0000653 - seed development trait, TO:0000196 - amylose content, TO:0000411 - seed length to width ratio, TO:0000382 - 1000-seed weight, TO:0006001 - salt tolerance, TO:0000696 - starch content, TO:0000175 - bacterial blight disease resistance, TO:0000397 - grain size, TO:0002677 - brassinosteroid sensitivity, TO:0000391 - seed size, TO:0000163 - auxin sensitivity, TO:0000590 - grain weight	PO:0001170 - seed development stage , PO:0009005 - root 
22604	HSP40	OsHSP40	HEAT SHOCK PROTEIN 40	heat shock protein 40	HEAT SHOCK PROTEIN 40	oshsp40	2		 Tolerance and resistance - Stress tolerance	Os02g0100300	LOC_Os02g01030.1, LOC_Os02g01030.2, LOC_Os02g01030.3, LOC_Os02g01030.4				GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0051085 - chaperone mediated protein folding requiring cofactor, GO:0005829 - cytosol, GO:0046983 - protein dimerization activity	TO:0006001 - salt tolerance	
22605	pTAC2	OspTAC2	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME PROTEIN 2	plastid transcriptionally active chromosome protein 2	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME PROTEIN 2	osptac2	3	a pentatricopeptide repeat protein. an ortholog of Arabidopsis  pTAC2.	 Coloration - Chlorophyll	Os03g0824100	LOC_Os03g60910.1				GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	
22606	TLP27	OsTLP27	THYLAKOID LUMENAL PROTEIN 27	Thylakoid lumenal protein 27	THYLAKOID LUMENAL PROTEIN 27		1	AtTLP homolog. TO:0020116: photochemical quenching.	 Coloration - Chlorophyll	Os01g0102300	LOC_Os01g01280.1				GO:0007623 - circadian rhythm, GO:0015979 - photosynthesis, GO:0009658 - chloroplast organization, GO:0009543 - chloroplast thylakoid lumen, GO:0043476 - pigment accumulation	TO:0002715 - chloroplast development trait, TO:0000494 - pigment content	PO:0025034 - leaf , PO:0020104 - leaf sheath 
22607	MEG2	OsMEG2	MATERNALLY EXPRESSED GENE 2	Maternally Expressed Gene2	MATERNALLY EXPRESSED PROTEIN 2		7			Os07g0296900	LOC_Os07g20110.1						
22608	LAS	OsLAS	LETHAL ALBINIC SEEDLING	Lethal albinic seedling		las	2		 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os02g0538000	LOC_Os02g33500.1				GO:0005739 - mitochondrion, GO:0006435 - threonyl-tRNA aminoacylation, GO:0005524 - ATP binding, GO:0004829 - threonine-tRNA ligase activity, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization, GO:0005737 - cytoplasm, GO:0009570 - chloroplast stroma	TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait	PO:0025034 - leaf 
22609	RAD52-2A	OsRad52-2a	RADIATION SENSITIVE 52-2A	Radiation sensitive 52-2a			3		 Tolerance and resistance - Stress tolerance	Os03g0851500	LOC_Os03g63450.1, LOC_Os03g63450.2				GO:0000724 - double-strand break repair via homologous recombination, GO:0003697 - single-stranded DNA binding, GO:0003690 - double-stranded DNA binding, GO:0000733 - DNA strand renaturation, GO:0009507 - chloroplast, GO:0003677 - DNA binding		
22610	_	OsRING331, RING331	_	rice homolog of AtRING1A/1B., RING-type E3 ubiquitin ligase 331			4			Os04g0450400	LOC_Os04g37740.1				GO:0016567 - protein ubiquitination, GO:0016021 - integral to membrane		
22611	_	MEG2, OsMEG2	_	Maternally Expressed Gene2		meg2-1, meg2-2	7	ROS1a Target gene.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits,  Character as QTL - Yield and productivity	Os07g0296900	LOC_Os07g20110.1				GO:0048316 - seed development	TO:0000382 - 1000-seed weight, TO:0000064 - embryo related trait, TO:0000149 - seed width, TO:0000146 - seed length, TO:0000696 - starch content, TO:0000304 - seed thickness	PO:0001170 - seed development stage 
22612	2ODD3	2-ODD3, Os2-ODD3, Os2ODD3, OsF3H04g, F3H04g, OsSAH2, SAH2, OsF3H2, F3H2, OsF3H04g/OsSAH2, OsS5H3, S5H3	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 3	2-oxoglutarate-dependent dioxygenase 3, SA hydroxylase 2, salicylic acid hydroxylase 2	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 3	sah2, osf3h04g	4	OsF3H2 in Wang et al. 2022. OsF3H04g acts as susceptible targets of transcription activator-like effectors (TALEs) from Xanthomonas oryzae pv. oryzicola. a Downy Mildew Resistance 6-like (DMR6-like) gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0581000	LOC_Os04g49194.1				GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0046244 - salicylic acid catabolic process, GO:0009751 - response to salicylic acid stimulus, GO:0042742 - defense response to bacterium	TO:0000476 - growth hormone content, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000303 - cold tolerance, TO:0000356 - brown spot disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000203 - bacterial leaf streak disease resistance	PO:0009006 - shoot system 
22613	2ODD5	2-ODD5, Os2-ODD5, Os2ODD5, OsLDOX1, LDOX1	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 5	2-oxoglutarate-dependent dioxygenase 5, leucoanthocyanidin dioxygenase 1	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 5		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0832600	LOC_Os01g61610.1, LOC_Os01g61610.2, LOC_Os01g61610.3, LOC_Os01g61610.4				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009030 - carpel 
22614	2ODD6	2-ODD6, Os2-ODD6, Os2ODD6, OsLDOX3, LDOX3	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 6	2-oxoglutarate-dependent dioxygenase 6, leucoanthocyanidin dioxygenase 3	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 6		5	GO:0120091: jasmonic acid hydrolase	 Biochemical character	Os05g0127500	LOC_Os05g03640.1				GO:0009753 - response to jasmonic acid stimulus, GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity	TO:0000172 - jasmonic acid sensitivity	
22615	2ODD7	2-ODD7, Os2-ODD7, Os2ODD7	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 7	2-oxoglutarate-dependent dioxygenase 7	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 7		7		 Biochemical character	Os07g0169600	LOC_Os07g07410.1, LOC_Os07g07410.2				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22616	2ODD9	2-ODD9, Os2-ODD9, Os2ODD9	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 9	2-oxoglutarate-dependent dioxygenase 9	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 9		10		 Biochemical character	Os10g0523100	LOC_Os10g37899.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22617	2ODD10	2-ODD10, Os2-ODD10, Os2ODD10, OsF3H6, F3H6	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 10	2-oxoglutarate-dependent dioxygenase 10, flavanone 3-hydroxylase 6	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 10		6	ANS (ANTHOCYANIN SYNTHASE) in Chen et al. 2019. TO:0001109: grain color trait.	 Seed - Morphological traits,  Coloration,  Biochemical character	Os06g0162500	LOC_Os06g06720.1				GO:0009962 - regulation of flavonoid biosynthetic process, GO:0005777 - peroxisome, GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding	TO:0000290 - flavonoid content	
22618	HIS1	2-ODD12, Os2-ODD12, Os2ODD12, 2ODD12, OsHIS1	HPPD INHIBITOR SENSITIVE 1	2-oxoglutarate-dependent dioxygenase 12	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 12	his1	2	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0280700	LOC_Os02g17940.6, LOC_Os02g17940.5, LOC_Os02g17940.4, LOC_Os02g17940.3, LOC_Os02g17940.2, LOC_Os02g17940.1				GO:0044272 - sulfur compound biosynthetic process, GO:0046872 - metal ion binding, GO:0009635 - response to herbicide, GO:0051213 - dioxygenase activity	TO:0000058 - herbicide sensitivity	PO:0025034 - leaf 
22619	2ODD13	2-ODD13, Os2-ODD13, Os2ODD13, OsHSL1, HSL1	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 13	2-oxoglutarate-dependent dioxygenase 13, HIS1-like gene 1	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 13		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0176700|Os06g0178500	LOC_Os06g07932.2, LOC_Os06g07932.1, LOC_Os06g08032.1				GO:0051213 - dioxygenase activity, GO:0009635 - response to herbicide, GO:0046872 - metal ion binding	TO:0000058 - herbicide sensitivity	PO:0025034 - leaf 
22620	2ODD16	2-ODD16, Os2-ODD16, Os2ODD16	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 16	2-oxoglutarate-dependent dioxygenase 16	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 16		1	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os01g0351800	LOC_Os01g24980.1, LOC_Os01g24980.2				GO:0051213 - dioxygenase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0046872 - metal ion binding		
22622	2ODD18	2-ODD18, Os2-ODD18, Os2ODD18	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 18	2-oxoglutarate-dependent dioxygenase 18	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 18		1		 Biochemical character	Os01g0352100	LOC_Os01g25010.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22623	2ODD20	2-ODD20, Os2-ODD20, Os2ODD20	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 20	2-oxoglutarate-dependent dioxygenase 20	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 20		3		 Biochemical character	Os03g0860600	LOC_Os03g64280.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22624	2ODD22	2-ODD22, Os2-ODD22, Os2ODD22	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 22	2-oxoglutarate-dependent dioxygenase 22	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 22		3		 Biochemical character	Os03g0618300	LOC_Os03g42130.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22625	2ODD23	2-ODD23, Os2-ODD23, Os2ODD23	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 23	2-oxoglutarate-dependent dioxygenase 23	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 23		4	2, 4-dihydroxy-1, 4-benzoxazin-3-one-glucoside deoxygenase. a benzoxazinoid biosynthetic gene.	 Biochemical character	Os04g0182200	LOC_Os04g10350.1				GO:0046872 - metal ion binding, GO:0002238 - response to molecule of fungal origin, GO:0051213 - dioxygenase activity, GO:0052315 - phytoalexin biosynthetic process		
22626	2ODD25	2-ODD25, Os2-ODD25, Os2ODD25	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25	2-oxoglutarate-dependent dioxygenase 25	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25		3	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os03g0439500	LOC_Os03g32470.1, LOC_Os03g32470.2, LOC_Os03g32480.1				GO:0051213 - dioxygenase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0046872 - metal ion binding		
22627	2ODD26	2-ODD26, Os2-ODD26, Os2ODD26	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 26	2-oxoglutarate-dependent dioxygenase 26	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 26		3	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os03g0856000	LOC_Os03g63900.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding, GO:0044272 - sulfur compound biosynthetic process		
22628	2ODD27	2-ODD27, Os2-ODD27, Os2ODD27, OsHSL2, HSL2	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 27	2-oxoglutarate-dependent dioxygenase 27, HIS1-like gene 2	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 27		6		 Biochemical character	Os06g0178700	LOC_Os06g08060.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22629	2ODD28	2-ODD28, Os2-ODD28, Os2ODD28	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 28	2-oxoglutarate-dependent dioxygenase 28	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 28		8		 Biochemical character	Os08g0390200	LOC_Os08g30080.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity		
22630	2ODD29	2-ODD29, Os2-ODD29, Os2ODD29	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 29	2-oxoglutarate-dependent dioxygenase 29	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 29		6		 Biochemical character	Os06g0255100	LOC_Os06g14400.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22631	2ODD30	2-ODD30, Os2-ODD30, Os2ODD30	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 30	2-oxoglutarate-dependent dioxygenase 30	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 30		1		 Biochemical character	Os01g0536400	LOC_Os01g35230.1				GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity		
22632	2ODD33	2-ODD33, Os2-ODD33, Os2ODD33	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 33	2-oxoglutarate-dependent dioxygenase 33	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 33		9	melatonin 2- hydroxylase.	 Biochemical character	Os09g0245500	LOC_Os09g07020.1, LOC_Os09g07020.2				GO:0016491 - oxidoreductase activity, GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22633	2ODD34	2-ODD34, Os2-ODD34, Os2ODD34	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 34	2-oxoglutarate-dependent dioxygenase 34	2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 34		8		 Biochemical character	Os08g0417100	LOC_Os08g32170.1				GO:0016491 - oxidoreductase activity, GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
22634	GSK3	OsSK12/OsGSK3, OsSK12, OsGSK3, SK12	GSK3-LIKE KINASE 3	GSK3/SHAGGY-Like Kinase 12, GSK3-like Kinase 3	GSK3-LIKE KINASE 3		1	a GSK3/SHAGGY-like kinase clade I member.	 Biochemical character	Os01g0296100	LOC_Os01g19150.1, LOC_Os01g19150.2, LOC_Os01g19150.3, LOC_Os01g19150.4, LOC_Os01g19150.5				GO:0007165 - signal transduction, GO:0005737 - cytoplasm, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		
22635	GSK4	OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, OsGSK3, GSK3	GSK3-LIKE KINASE 4	GSK3/SHAGGY-Like Kinase 23, GSK3-like Kinase 4	GSK3-LIKE KINASE 4	cr-osgsk3	2	a GSK3/SHAGGY-like kinase clade II member. an ortholog of Arabidopsis BR INSENSITIVE2 (BIN2). OsGSK3 in Gao et al. 2019, Tian et al. 2022, Kim et al. 2022, Wang et al. 2024. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway.	 Biochemical character,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os02g0236200	LOC_Os02g14130.1				GO:0005524 - ATP binding, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0004674 - protein serine/threonine kinase activity	TO:0002677 - brassinosteroid sensitivity, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000346 - tiller number, TO:0002688 - leaf lamina joint bending	
22636	_	OsSTA147, STA147	_				5	LOC_Os05g28710 (not found in MSU Rice Genome Annotation Project Release 7 data). a mature anther-preferentially expressed gene.	 Reproductive organ - Spikelet, flower, glume, awn								PO:0009066 - anther 
22637	ARP6	OsARP6	ACTIN RELATED PROTEIN 6			osarp6, osarp6-1, osarp6-2	1	Q5NBI2. a key component of the H2A.Z exchange complex. a key component of SWR1c. PO:0030123: panicle inflorescence. TO:1000024: palea morphology trait.	 Seed,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn	Os01g0269900	LOC_Os01g16414.1, LOC_Os01g16414.4, LOC_Os01g16414.3, LOC_Os01g16414.2				GO:0006950 - response to stress, GO:0008283 - cell proliferation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0080006 - internode patterning, GO:0051726 - regulation of cell cycle, GO:0048316 - seed development, GO:0009266 - response to temperature stimulus, GO:0010431 - seed maturation, GO:0006952 - defense response, GO:0009910 - negative regulation of flower development, GO:0006338 - chromatin remodeling	TO:0000485 - sterility related trait, TO:0000639 - seed fertility, TO:0000495 - chlorophyll content, TO:0000657 - spikelet anatomy and morphology trait, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000135 - leaf length, TO:0000653 - seed development trait, TO:0002661 - seed maturation, TO:0002768 - spikelet length	PO:0009010 - seed , PO:0020148 - shoot apical meristem , PO:0001170 - seed development stage , PO:0009005 - root , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009047 - stem 
22638	MORC1	OsMORC1	MICRORCHIDIA PROTEIN 1	Microrchidia protein 1	MICRORCHIDIA PROTEIN 1		10	LOC_Os10g10190.1		Os10g0181700	LOC_Os10g10190.1				GO:0005737 - cytoplasm, GO:0016301 - kinase activity		
22639	MORC4	OsMORC4	MICRORCHIDIA PROTEIN 4	Microrchidia protein 4	MICRORCHIDIA PROTEIN 4		2	LOC_Os02g27000.1		Os02g0469300	LOC_Os02g27000.1				GO:0005524 - ATP binding, GO:0005634 - nucleus		PO:0005052 - plant callus 
22640	MORC6A	OsMORC6a	MICRORCHIDIA PROTEIN 6A	Microrchidia protein 6a	MICRORCHIDIA PROTEIN 6A		6	LOC_Os06g28060.1		Os06g0474900	LOC_Os06g28060.1, LOC_Os06g28060.2, LOC_Os06g28060.3				GO:0005634 - nucleus		PO:0000003 - whole plant 
22641	MORC6B	OsMORC6b	MICRORCHIDIA PROTEIN 6B	Microrchidia protein 6b	MICRORCHIDIA PROTEIN 6B		11	LOC_Os11g26830.1		Os11g0454800	LOC_Os11g26830.1				GO:0005634 - nucleus		PO:0009010 - seed 
22642	MORC6C	OsMORC6c, MORC6, OsMORC6	MICRORCHIDIA PROTEIN 6C	Microrchidia protein 6c, ATP-binding protein MORC6	MICRORCHIDIA PROTEIN 6C		1			Os01g0549200	LOC_Os01g36840.3, LOC_Os01g36840.2, LOC_Os01g36840.1				GO:0005739 - mitochondrion		
22643	MORC7	OsMORC7	MICRORCHIDIA PROTEIN 7	Microrchidia protein 7	MICRORCHIDIA PROTEIN 7		4	LOC_Os04g24550.1		Os04g0311100	LOC_Os04g24550.1				GO:0005634 - nucleus		PO:0009010 - seed 
22644	_	OrGSE	_	Oryza rufipogon GREEN SPECIAL EXPRESS				OrGSE corresponds to LOC_Os08g02210 (Os08g0114100) of Oryza sativa. OrGSE shares homology with D27 (Os11g0587000) protein in rice. PO:0030117: spike inflorescence.							GO:0009507 - chloroplast		PO:0025034 - leaf , PO:0009047 - stem 
22645	CD		CLUSTER AND DWARF 	cluster and dwarf		cd	8	Th T-DNA insertion of cluster and dwarf (cd) mutant  was in close proximity to the miR156f gene and was associated with its up-regulation (Dai et al. 2018). 	 Vegetative organ - Culm,  Character as QTL - Yield and productivity							TO:0000346 - tiller number, TO:0000207 - plant height	
22646	RAB5-GEF2	Rab5-GEF2, OsRab5-GEF2, Rab5GEF2, OsRab5GEF2, OsVPS9B, VPS9B, OsGEF31, GEF31	RAB5-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 2	Guanine nucleotide exchange factor 2 for Rab5 proteins, Guanine nucleotide exchange factor 31, VPS9 RabGEF protein B, VPS9 RAB GUANINE NUCLEOTIDE EXCHANGE FACTOR B	RAB5-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 2		3	RanGEF family. VPS9 domain containing protein.		Os03g0842700	LOC_Os03g62580.1, LOC_Os03g62580.2, LOC_Os03g62580.3, LOC_Os03g62580.4, LOC_Os03g62580.5, LOC_Os03g62580.6, LOC_Os03g62580.7				GO:0015031 - protein transport, GO:0016021 - integral to membrane, GO:0016482 - cytoplasmic transport	TO:0000490 - protein composition related trait	
22647	_		_	TraB family protein			8	LOC_Os08g43230. Os08g43230 might play vital roles in salt stress tolerance (Nounjan et al. 2018).	 Tolerance and resistance - Stress tolerance	Os08g0545700	LOC_Os08g43230.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
22648	F3'H4	OsF3'H4, OsCYP71U11, CYP71U11	FLAVONOID 3'-HYDROXYLASE 4	cytochrome P450 76M5-like, flavonoid 3'-hydroxylase 4, Cytochrome P450 71U11	FLAVONOID 3'-HYDROXYLASE 4		8	BGIOSGA026530. LOC_Os08g43440 might play vital roles in salt stress tolerance (Nounjan et al. 2018). cytochrome P450 76M5-like in Chen et al. 2019.	 Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0547900	LOC_Os08g43440.1				GO:0009813 - flavonoid biosynthetic process, GO:0009735 - response to cytokinin stimulus, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009651 - response to salt stress	TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance	PO:0009066 - anther , PO:0025034 - leaf 
22649	RBP-L	OsRBP-L	RNA-BINDING PROTEIN L	RNA-Binding Protein L	RNA-BINDING PROTEIN L		4	 an interacting partner of RBP-P.		Os04g0625800	LOC_Os04g53440.1, LOC_Os04g53440.2				GO:0003729 - mRNA binding, GO:0016197 - endosome transport, GO:0051028 - mRNA transport, GO:0005829 - cytosol, GO:0005768 - endosome		
22650	RBP-208	OsRBP-208	RNA-BINDING PROTEIN 208	RNA-Binding Protein 208	RNA-BINDING PROTEIN 208		8	LOC_Os08g40880. an interacting partner of RBP-P.		Os08g0520300	LOC_Os08g40880.1				GO:0003729 - mRNA binding		
22651	RAD17	OsRAD17	RADIATION SENSITIVE 17	Radiation sensitive 17		Osrad17, Osrad17-1, Osrad17-2, and Osrad17-3	3	GO:1990918: double-strand break repair involved in meiotic recombination.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0242100	LOC_Os03g13850.1				GO:0006302 - double-strand break repair, GO:0000790 - nuclear chromatin, GO:0033314 - mitotic cell cycle DNA replication checkpoint, GO:0003682 - chromatin binding, GO:0000077 - DNA damage checkpoint		
22652	XA44	xa44, xa44(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 44				11	a recessive resistance gene conferring Xoo resistance. two candidate genes: Os11g0690066 and Os11g0690466. 	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
22653	XA43	Xa43(t), Xa43	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 43				11	a single dominant resistance gene conferring Xoo resistance. two candidate genes: Os11g0687700 and Os11g0688000.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
22654	AGG1	OsHEIP1, HEIP1, OsAGG1, OsAGG1.1, OsAGG1.2	ABERRANT GAMETOGENESIS 1	HEI10 Interaction Protein 1	HEI10 INTERACTION PROTEIN 1	heip1, heip1-1, heip1-2, heip1-3, heip1-4, osagg1	1		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Female sterility	Os01g0167700	LOC_Os01g07330.1, LOC_Os01g07330.2, LOC_Os01g07330.3, LOC_Os01g07330.4				GO:0009554 - megasporogenesis, GO:0009556 - microsporogenesis, GO:0009555 - pollen development, GO:0005634 - nucleus, GO:0009553 - embryo sac development, GO:0051321 - meiotic cell cycle, GO:0007292 - female gamete generation, GO:0051026 - chiasma formation, GO:0048232 - male gamete generation, GO:0010520 - regulation of reciprocal meiotic recombination	TO:0000421 - pollen fertility, TO:0000358 - female sterility, TO:0000437 - male sterility, TO:0000455 - seed set percent	PO:0001007 - pollen development stage , PO:0009030 - carpel , PO:0009066 - anther , PO:0001004 - anther development stage 
22655	BPH30	Bph33, Bph30	BROWN PLANTHOPPER RESISTANCE 30	BROWN PLANTHOPPER RESISTANCE 33			4	Bph33 was present in BPH-resistant Sri Lankan rice cultivars KOLAYAL and POLIYAL. MW176108, MW176109 (indica BPH30 genomic & cDNA sequences). NCBI accession number PRJNA735790. GO:2001008: positive regulation of cellulose biosynthetic process.	 Tolerance and resistance - Insect resistance	Os04g0115650	LOC_Os04g02520.1				GO:0010410 - hemicellulose metabolic process, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009664 - plant-type cell wall organization, GO:0043068 - positive regulation of programmed cell death, GO:0002213 - defense response to insect, GO:0030244 - cellulose biosynthetic process	TO:0000424 - brown planthopper resistance, TO:0000205 - white-backed planthopper resistance	PO:0020104 - leaf sheath , PO:0005427 - sclerenchyma , PO:0000077 - sclerenchyma cell 
22656	_	ZnF5, OrZnF5	_	zinc-finger protein 5			7	ZnF5 in RPAD (RICE PLANT ARCHITECTURE DOMESTICATION) locus of O. rufipogon (deleted in O. sativa). MF503970, MF503971, MF503972 (O. rufipogon). ASR75319 (O. rufipogon).	 Character as QTL - Yield and productivity							TO:0000449 - grain yield per plant, TO:0000447 - filled grain number, TO:0000346 - tiller number, TO:0000567 - tiller angle	
22657	_	ZnF7, OrZnF7	_	zinc-finger protein 7			7	ZnF7 in RPAD (RICE PLANT ARCHITECTURE DOMESTICATION) locus of O. rufipogon (deleted in O. sativa). MF503970, MF503971, MF503972 (O. rufipogon). ASR75325 (O. rufipogon).	 Character as QTL - Yield and productivity							TO:0000449 - grain yield per plant, TO:0000346 - tiller number, TO:0000567 - tiller angle, TO:0000447 - filled grain number	
22658	_	ZnF8, OrZnF8	_	zinc-finger protein 8			7	ZnF8 in RPAD (RICE PLANT ARCHITECTURE DOMESTICATION) locus of O. rufipogon (deleted in O. sativa). MF503970, MF503971, MF503972 (O. rufipogon). ASR75331 (O. rufipogon).	 Character as QTL - Yield and productivity							TO:0000567 - tiller angle, TO:0000346 - tiller number, TO:0000447 - filled grain number, TO:0000449 - grain yield per plant	
22659	ARD4	OsARD4	ACIREDUCTONE DIOXYGENASE 4	acireductone dioxygenase 4	ACIREDUCTONE DIOXYGENASE 4		10	LOC_Os10g28360.1 Q7XEJ5. TO:0001041: root yield.	 Vegetative organ - Root,  Biochemical character	Os10g0419500	LOC_Os10g28360.1				GO:0048364 - root development, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0080022 - primary root development, GO:0010311 - lateral root formation, GO:0006555 - methionine metabolic process, GO:0019509 - methionine salvage, GO:0005506 - iron ion binding, GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity	TO:0000043 - root anatomy and morphology trait	PO:0009005 - root 
22660	ACL2	OsACL2	ABAXIALLY CURLED LEAF 2	abaxially curled leaf 2			2	LOC_Os02g33330.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0536500	LOC_Os02g33330.1				GO:0048366 - leaf development, GO:0009414 - response to water deprivation	TO:0000085 - leaf rolling, TO:0000276 - drought tolerance	PO:0001050 - leaf development stage , PO:0025034 - leaf , PO:0020104 - leaf sheath 
22661	NLS1	OsNLS1	NECROTIC LEAF SHEATH 1	necrotic leaf sheath 1		nls1-1D, nls1-2D	11	a CC-NB-LRR-type R gene.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic	Os11g0249000 	LOC_Os11g14380.1				GO:0031348 - negative regulation of defense response, GO:0009863 - salicylic acid mediated signaling pathway, GO:0043531 - ADP binding, GO:0042742 - defense response to bacterium	TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22662	RPM1 	OsRPM1	_	disease resistance protein RPM1 homolog			9	LOC_Os09g09490.	 Tolerance and resistance	Os09g0267800	LOC_Os09g09490.1				GO:0009626 - plant-type hypersensitive response		
22663	STI1A	OsHop/Sti1a, Hop/Sti1a, Sti1a	STRESS-INDUCED PROTEIN 1A	stress-induced protein 1a, Hop/Sti1 homolog a, STI1 homolog a, Hsp90 co-chaperone Hop/Sti1a, Hsp70-Hsp90 Organizing Protein/stress-induced protein 1a	STRESS-INDUCED PROTEIN 1A		2		 Tolerance and resistance - Disease resistance	Os02g0644100	LOC_Os02g43020.1				GO:0051879 - Hsp90 protein binding, GO:0050832 - defense response to fungus, GO:0010200 - response to chitin, GO:0005783 - endoplasmic reticulum	TO:0000439 - fungal disease resistance, TO:0000074 - blast disease	
22664	STI1B	OsHop/Sti1b, Hop/Sti1b, Sti1b	STRESS-INDUCED PROTEIN 1B	stress-induced protein 1b, Hop/Sti1 homolog b, STI1 homolog b, Hsp90 co-chaperone Hop/Sti1b, Hsp70-Hsp90 Organizing Protein/stress-induced protein 1b	STRESS-INDUCED PROTEIN 1B		4		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0538000	LOC_Os04g45480.1				GO:0051879 - Hsp90 protein binding, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0005783 - endoplasmic reticulum, GO:0010200 - response to chitin	TO:0000074 - blast disease, TO:0000259 - heat tolerance	
22665	SLL2	OsSLL2	SHALLOT-LIKE 2 	shallot-like 2		sll2	7	LOC_Os07g38664.	 Vegetative organ - Leaf	Os07g0574400	LOC_Os07g38664.1					TO:0000085 - leaf rolling, TO:0000316 - photosynthetic ability, TO:0000207 - plant height, TO:0000346 - tiller number	
22667	EPF1	OsEPF1, OsEPF2, EPF2	EPIDERMAL PATTERNING FACTOR 1	epidermal patterning factor 1	EPIDERMAL PATTERNING FACTOR 1		4	OsEPF2 in Guo et al. 2023. GO:2000122: negative regulation of stomatal complex development . 	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0637300	LOC_Os04g54490.1				GO:0010015 - root morphogenesis, GO:0010052 - guard cell differentiation, GO:0009408 - response to heat, GO:0005576 - extracellular region, GO:0009414 - response to water deprivation, GO:0010618 - aerenchyma formation, GO:0010374 - stomatal complex development	TO:0000529 - abaxial stomatal frequency, TO:0001017 - water use efficiency, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance, TO:0000566 - stomatal frequency, TO:0000530 - adaxial stomatal frequency, TO:0000316 - photosynthetic ability, TO:0001015 - photosynthetic rate	
22668	ALKBH1	OsALKBH1	ALKB HOMOLOG 1	AlkB homolog 1	ALKB HOMOLOG 1	Osalkbh1, Osalkbh1_1, Osalkbh1_2, alkbh1	3	PDB ID: 5XOI. a rice homolog of Escherichia coli AlkB. GO:0061086: negative regulation of histone H3-K27 methylation.	 Biochemical character	Os03g0816500	LOC_Os03g60190.1, LOC_Os03g60190.2				GO:0005634 - nucleus, GO:0051569 - regulation of histone H3-K4 methylation, GO:0008198 - ferrous iron binding, GO:0016491 - oxidoreductase activity, GO:0051213 - dioxygenase activity, GO:0080111 - DNA demethylation		
22669	SHL1	OsSHL1, OsPHD34, PHD34	SHORT LIFE 1	SHL homolog 1, Plant homeo-domain finger protein 34, PHD finger protein 34			7	BGIOSGA025290. B8B7X1 (indica). an Arabidopsis SHL (SHORT LIFE) homolog. 		Os07g0186400	LOC_Os07g08880.1, LOC_Os07g08880.2, LOC_Os07g08880.3, LOC_Os07g08880.4				GO:0046872 - metal ion binding, GO:0003682 - chromatin binding		
22670	EBL2	OsEBL2, OsPHD38, PHD38	EBS-LIKE 2	EARLY BOLTING IN SHORT DAYS-like 2, EBS-like 2, Plant homeo-domain finger protein 38, PHD finger protein 38	EBS-LIKE 2		9	BGIOSGA030686. B8BF25 (indica). an Arabidopsis EBS homolog.		Os09g0386500	LOC_Os09g21770.1				GO:0046872 - metal ion binding, GO:0003682 - chromatin binding		
22671	SHL2	OsSHL2, OsPHD17, PHD17	SHORT LIFE 2	SHL homolog 2, Plant homeo-domain finger protein 17, PHD finger protein 17			7	BGIOSGA013740. B8ALC1 (indica). an Arabidopsis SHL (SHORT LIFE) homolog. 		Os03g0799600	LOC_Os03g58530.1, LOC_Os03g58530.2				GO:0046872 - metal ion binding, GO:0003677 - DNA binding, GO:0003682 - chromatin binding		
22672	DUF810.2	OsDUF810.2	DUF810 FAMILY MEMBER 2	domains of unknown function 810.2, DUF810 family member 2	DUF810 FAMILY MEMBER 2		3	LOC_Os03g47930.		Os03g0683700	LOC_Os03g47930.1				GO:0005737 - cytoplasm		
22673	DUF810.3	OsDUF810.3	DUF810 FAMILY MEMBER 3	domains of unknown function 810.3, DUF810 family member 3	DUF810 FAMILY MEMBER 3		4	LOC_Os04g48040.		Os04g0568800	LOC_Os04g48040.1				GO:0005737 - cytoplasm		
22674	DUF810.4	OsDUF810.4	DUF810 FAMILY MEMBER 4	domains of unknown function 810.4, DUF810 family member 4	DUF810 FAMILY MEMBER 4		8	LOC_Os08g30070.		Os08g0390100	LOC_Os08g30070.1				GO:0005759 - mitochondrial matrix		
22675	DUF810.5	OsDUF810.5	DUF810 FAMILY MEMBER 5	domains of unknown function 810.5, DUF810 family member 5	DUF810 FAMILY MEMBER 5		9	LOC_Os09g17760.		Os09g0346700	LOC_Os09g17760.1				GO:0005759 - mitochondrial matrix		
22676	DUF810.6	OsDUF810.6	DUF810 FAMILY MEMBER 6	domains of unknown function 810.6, DUF810 family member 6	DUF810 FAMILY MEMBER 6		10	LOC_Os10g16430.		Os10g0264950	LOC_Os10g16430.1				GO:0042579 - microbody		
22677	DUF810.7	OsDUF810.7	DUF810 FAMILY MEMBER 7	domains of unknown function 810.7, DUF810 family member 7	DUF810 FAMILY MEMBER 7		10	LOC_Os10g33240.	 Tolerance and resistance - Stress tolerance	Os10g0471000	LOC_Os10g33240.1				GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009408 - response to heat	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	
22678	G	OsG	_				3	LOC_Os03g01014. rice ortholog of soybean stay-green gene G (GmG).	 Seed - Physiological traits - Dormancy	Os03g0100030	LOC_Os03g01014.1				GO:0010162 - seed dormancy, GO:0016021 - integral to membrane	TO:0000253 - seed dormancy	
22679	GDPD2	OsGDPD2	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 2	Glycerophosphodiester phosphodiesterase 2	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 2		2	LOC_Os02g31030. Arabidopsis GDPD2 homolog. TO:0020102: phosphate content.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0514500	LOC_Os02g31030.1, LOC_Os02g31030.2				GO:0006629 - lipid metabolic process, GO:0046475 - glycerophospholipid catabolic process, GO:0042594 - response to starvation, GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0045017 - glycerolipid biosynthetic process, GO:0008081 - phosphoric diester hydrolase activity	TO:0000602 - total fat content, TO:0000227 - root length, TO:0000143 - relative biomass, TO:0000627 - relative phosphorus utilization efficiency	PO:0009037 - lemma , PO:0009066 - anther , PO:0009038 - palea , PO:0009010 - seed , PO:0009047 - stem , PO:0009005 - root , PO:0025034 - leaf , PO:0000003 - whole plant 
22680	SUN1	OsSUN1, OsSUN2, SUN2	SUN DOMAIN-CONTAINING PROTEIN 1	SUN (Sad1/UNC-84) domain-containing protein 1, SUN domain-containing protein 1, SUN protein 1, SUN Domain Protein 2	SUN DOMAIN-CONTAINING PROTEIN 1	Ossun2, Ossun2-1	1	OsSUN2 in Zhang et al. 2020.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Tolerance and resistance - Stress tolerance	Os01g0267600	LOC_Os01g16220.1				GO:0009737 - response to abscisic acid stimulus, GO:0007129 - synapsis, GO:0045141 - meiotic telomere clustering, GO:0051321 - meiotic cell cycle, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0005635 - nuclear envelope, GO:0006998 - nuclear envelope organization, GO:0043495 - protein anchor	TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
22681	SUN3	OsSUN3, OsSUN3.1, OsSUN3.2, OsSUN3.3, OsSUN3.4	SUN DOMAIN-CONTAINING PROTEIN 3	SUN (Sad1/UNC-84) domain-containing protein 3, SUN domain-containing protein 3, SUN protein 3	SUN DOMAIN-CONTAINING PROTEIN 3		1	LOC_Os01g65520.	 Tolerance and resistance - Stress tolerance	Os01g0876400	LOC_Os01g65520.1				GO:0009651 - response to salt stress, GO:0034975 - protein folding in endoplasmic reticulum, GO:0005737 - cytoplasm, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
22682	SUN5	OsSUN5	SUN DOMAIN-CONTAINING PROTEIN 5	SUN (Sad1/UNC-84) domain-containing protein 5, SUN domain-containing protein 5, SUN protein 5	SUN DOMAIN-CONTAINING PROTEIN 5		1	LOC_Os01g41600.	 Tolerance and resistance - Stress tolerance	Os01g0599900	LOC_Os01g41600.1				GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0034975 - protein folding in endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance	PO:0025281 - pollen , PO:0007616 - flowering stage 
22683	_		_	Harpin-induced 1 domain containing protein			4		 Tolerance and resistance - Disease resistance	Os04g0685300	LOC_Os04g58850.1				GO:0046658 - anchored to plasma membrane, GO:0050832 - defense response to fungus, GO:0009506 - plasmodesma, GO:0016021 - integral to membrane	TO:0000074 - blast disease	
22684	_		_				1		 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0542000	LOC_Os01g36090.1				GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process, GO:0009409 - response to cold, GO:0005829 - cytosol, GO:0016853 - isomerase activity	TO:0000074 - blast disease	
22685	_		_				1		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0926300 	LOC_Os01g70170.1				GO:0006098 - pentose-phosphate shunt, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0033587 - shikimate biosynthetic process, GO:0046686 - response to cadmium ion, GO:0009809 - lignin biosynthetic process, GO:0004801 - transaldolase activity, GO:0005975 - carbohydrate metabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
22686	_		_				2		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0198600  	LOC_Os02g10510.1				GO:0050832 - defense response to fungus, GO:0046686 - response to cadmium ion, GO:0031593 - polyubiquitin binding, GO:0005634 - nucleus, GO:0004190 - aspartic-type endopeptidase activity, GO:0005829 - cytosol	TO:0000074 - blast disease	
22687	SCSB	OsSCSb	SUCCINYL-COA SYNTHETASE PROTEIN B-CHAIN	succinyl-CoA synthetase protein b-chain	SUCCINYL-COA SYNTHETASE PROTEIN B-CHAIN		2	Q6K9N6.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0621700 	LOC_Os02g40830.3, LOC_Os02g40830.2, LOC_Os02g40830.1				GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0006099 - tricarboxylic acid cycle, GO:0005739 - mitochondrion, GO:0000287 - magnesium ion binding, GO:0004775 - succinate-CoA ligase (ADP-forming) activity	TO:0000074 - blast disease	
22688	PSB27	Psb27, OsPSB27, Psb27-H1	_	photosystem II subunit Psb27, Photosystem II repair protein PSB27-H1			3	GO:0071484: cellular response to light intensity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0333400 	LOC_Os03g21560.1				GO:0009535 - chloroplast thylakoid membrane, GO:0010206 - photosystem II repair, GO:0050832 - defense response to fungus, GO:0010207 - photosystem II assembly, GO:0009523 - photosystem II, GO:0009543 - chloroplast thylakoid lumen	TO:0000074 - blast disease	
22689	UVR8B	OsUVR8b, UVR8b, OsRCC1-2, RCC1-2, OsGEF9, GEF9	UV RESISTANCE LOCUS 8B	UV resistance locus 8b, Guanine nucleotide exchange factor 9, RCC repeat protein 1-2, regulators of chromosomal condensation repeat protein 1-2	RCC REPEAT PROTEIN 1-2	Osuvr8b	4	RanGEF family. RCC1 domain containing protein. UV-B receptor.  GO:0090351: seedling development.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0435700  	LOC_Os04g35570.1, LOC_Os04g35570.2, LOC_Os04g35570.3				GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0009640 - photomorphogenesis, GO:0009881 - photoreceptor activity, GO:0042803 - protein homodimerization activity, GO:0010224 - response to UV-B, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0009643 - photosynthetic acclimation	TO:0000357 - growth and development trait, TO:0000074 - blast disease, TO:0000601 - UV-B light sensitivity, TO:0000290 - flavonoid content	
22690	MSH2	OsMSH2	MUTATOR LOCUS HOMOLOG 2	DNA mismatch repair protein, mutator locus homolog 2, Mutated S homologue 2	MUTATOR LOCUS HOMOLOG 2	msh2, Osmsh2	5	GO:0140013: meiotic nuclear division.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0274200	LOC_Os05g19270.1				GO:0008094 - DNA-dependent ATPase activity, GO:0032300 - mismatch repair complex, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0051726 - regulation of cell cycle, GO:0046686 - response to cadmium ion, GO:0006301 - postreplication repair, GO:0032302 - MutSbeta complex, GO:0032301 - MutSalpha complex, GO:0006290 - pyrimidine dimer repair, GO:0051321 - meiotic cell cycle, GO:0005524 - ATP binding, GO:0003684 - damaged DNA binding, GO:0030983 - mismatched DNA binding, GO:0043570 - maintenance of DNA repeat elements, GO:0006298 - mismatch repair, GO:0045910 - negative regulation of DNA recombination, GO:0045128 - negative regulation of reciprocal meiotic recombination		
22691	CDKF2	OsCDKF2	CYCLIN-DEPENDENT KINASE F2	cyclin-dependent kinase F-2	CYCLIN-DEPENDENT KINASE F2		5	GO:0140013: meiotic nuclear division. GO:0035556: intracellular signal transduction.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os10g0157200	LOC_Os10g06930.1				GO:0004674 - protein serine/threonine kinase activity, GO:0051321 - meiotic cell cycle, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0010468 - regulation of gene expression		
22692	CDKG1	OsCDKG1	CYCLIN-DEPENDENT KINASG1	cyclin-dependent kinase G-1	CYCLIN-DEPENDENT KINASE G1		5	GO:0140013: meiotic nuclear division. GO:0035556: intracellular signal transduction.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os12g0432000	LOC_Os12g24420.1				GO:0004693 - cyclin-dependent protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus, GO:0051321 - meiotic cell cycle, GO:0005524 - ATP binding		
22693	_	RPS10, OsRPS10, rps10	_	ribosomal protein S10, ribosomal protein small subunit 10	_		3		 Other	Os03g0196800	LOC_Os03g10060.1				GO:0006412 - translation, GO:0005840 - ribosome, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome		
22694	_	RPS16, OsRPS16, rps16	_	ribosomal protein S16, ribosomal protein small subunit 16	_		8		 Other	Os08g0517900	LOC_Os08g40610.1				GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation		
22695	_	RPS20, OsRPS20, rps20	_	ribosomal protein S20, ribosomal protein small subunit 20	_		1		 Other	Os01g0678600	LOC_Os01g48690.1, LOC_Os01g48690.2				GO:0006412 - translation, GO:0005840 - ribosome, GO:0003723 - RNA binding, GO:0003735 - structural constituent of ribosome, GO:0070181 - SSU rRNA binding		
22696	GSE	OsGSE	GREEN SPECIAL EXPRESS				8	LOC_Os08g02210.		Os08g0114100	LOC_Os08g02210.1, LOC_Os08g02210.2				GO:0009941 - chloroplast envelope, GO:0009507 - chloroplast, GO:0009534 - chloroplast thylakoid		PO:0025034 - leaf , PO:0009006 - shoot system 
22697	_		_				1		 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0884200 						TO:0000485 - sterility related trait, TO:0000207 - plant height	
22698	_		_				1		 Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os01g0886000  	LOC_Os01g66280.1				GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0000485 - sterility related trait, TO:0000346 - tiller number	
22699	_		_				10		 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Vegetative organ - Culm	Os10g0555200  	LOC_Os10g40650.1				GO:0000967 - rRNA 5'-end processing	TO:0000207 - plant height, TO:0000485 - sterility related trait	
22700	DLN239	OsDLN239	DLN REPRESSOR 239	DLN repressor 239, DLN motif protein 239	DLN REPRESSOR 239		10		 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Vegetative organ - Culm	Os10g0555300   	LOC_Os10g40660.1				GO:0003676 - nucleic acid binding	TO:0000207 - plant height, TO:0000485 - sterility related trait	
22701	_		_				10	TO:0006064: rolled leaf.	 Vegetative organ - Culm,  Vegetative organ - Leaf	Os10g0558850    					GO:0003676 - nucleic acid binding	TO:0000207 - plant height, TO:0000085 - leaf rolling	
22702	_		_				1		 Biochemical character,  Vegetative organ - Leaf	Os01g0883900    	LOC_Os01g66110.1, LOC_Os01g66110.2				GO:0005802 - trans-Golgi network, GO:0016021 - integral to membrane, GO:0005768 - endosome, GO:0008168 - methyltransferase activity	TO:0002681 - leaf curling	
22703	_		_				1		 Character as QTL - Yield and productivity	Os01g0931600     	LOC_Os01g70590.1					TO:0000346 - tiller number	
22704	_		_				2		 Biochemical character,  Vegetative organ - Leaf	Os02g0258900     	LOC_Os02g15870.1, LOC_Os02g15870.2, LOC_Os02g15870.3, LOC_Os02g15870.4, LOC_Os02g15870.5				GO:0003824 - catalytic activity, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0019008 - molybdopterin synthase complex	TO:0002681 - leaf curling, TO:0000326 - leaf color	
22705	USP22	OsUSP22	UNIVERSAL STRESS PROTEIN 22		UNIVERSAL STRESS PROTEIN 22		5		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os05g0170200      	LOC_Os05g07810.1				GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009413 - response to flooding	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002681 - leaf curling, TO:0000507 - osmotic adjustment capacity	PO:0009005 - root , PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009009 - plant embryo , PO:0025034 - leaf 
22706	_		_				10		 Vegetative organ - Leaf	Os10g0556500       						TO:0002681 - leaf curling, TO:0000326 - leaf color	
22707	_		_				12		 Biochemical character,  Vegetative organ - Leaf	Os12g0103000        	LOC_Os12g01240.1				GO:0009941 - chloroplast envelope, GO:0016021 - integral to membrane, GO:0005509 - calcium ion binding, GO:0000095 - S-adenosylmethionine transmembrane transporter activity, GO:0005743 - mitochondrial inner membrane	TO:0000326 - leaf color	
22708	_		_				12		 Biochemical character,  Vegetative organ - Leaf	Os12g0104400         	LOC_Os12g01370.1				GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, GO:0016021 - integral to membrane, GO:0006629 - lipid metabolic process	TO:0000326 - leaf color	
22709	_		_				12		 Vegetative organ - Leaf	Os12g0104733         					GO:0048366 - leaf development	TO:0000655 - leaf development trait	
22710	DSM1	OsDSM1, OsMAPKKK6, MAPKKK6	DROUGHT-HYPERSENSITIVE MUTANT 1	drought-hypersensitive mutant1, MAPK kinase kinase 6	MAPK KINASE KINASE 6	dsm1, dsm1-1, dsm1-2	2	A Raf-Like MAPKKK Gene. GO:0072593: reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os02g0743500	LOC_Os02g50970.1				GO:0005634 - nucleus, GO:0004672 - protein kinase activity, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
22711	_		_	Brittle-1			9	LOC_Os09g32200.	 Biochemical character	Os09g0497000	LOC_Os09g32200.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity		
22712	DRP5A	OsDRP5A	DYNAMIN-RELATED PROTEIN 5A	ATP- binding protein	DYNAMIN-RELATED PROTEIN 5A		1		 Biochemical character	Os01g0748000	LOC_Os01g54420.1				GO:0008017 - microtubule binding, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0016020 - membrane, GO:0005737 - cytoplasm		
22713	CDP3.2	FLOC2, OsFLOC2, OsCDP3.2	CUPIN DOMAIN PROTEIN 3.2	cupin domain containing protein, cupin, FLO2-interacting cupin domain protein 2, cupin domain protein 3.2	CUPIN DOMAIN PROTEIN 3.2		3		 Seed - Physiological traits - Storage substances	Os03g0197300	LOC_Os03g10110.1				GO:0016021 - integral to membrane, GO:0045735 - nutrient reservoir activity		PO:0009010 - seed 
22714	_		_	18S rRNA			9	LOC_Os09g00999. Although these RNAs were annotated as expressed proteins in the MSU v.7.0 database, both contained abundant repetitive sequences with significant alignment with 18S and 26S rRNA sequences (Yang et al. 2018).									
22715	_		_	26S rRNA			9	LOC_ Os09g01000. Although these RNAs were annotated as expressed proteins in the MSU v.7.0 database, both contained abundant repetitive sequences with significant alignment with 18S and 26S rRNA sequences (Yang et al. 2018).									
22716	RBPD	OsRBP-D, RBP-D	_	RNA-binding protein RBP-D, RNA-binding protein D			6	LOC_ Os06g37000. GO:1990904: ribonucleoprotein complex.		Os06g0566100	LOC_Os06g37000.1, LOC_Os06g37000.2				GO:0005737 - cytoplasm, GO:0003723 - RNA binding, GO:0003730 - mRNA 3'-UTR binding, GO:0003727 - single-stranded RNA binding		
22717	_		_	RNA-recognition motif (RRM)-containing RNA-binding protein			3	LOC_ Os03g04780. GO:1990904: ribonucleoprotein complex.		Os03g0141300	LOC_Os03g04780.1				GO:0003723 - RNA binding		
22718	LHCA1	OsLhca1, Lhca1	LIGHT-HARVESTING COMPLEX SUBUNIT A1	light-harvesting complex subunit a1	LIGHT-HARVESTING COMPLEX SUBUNIT A1		6			Os06g0320500	LOC_Os06g21590.2, LOC_Os06g21590.1				GO:0009522 - photosystem I, GO:0016168 - chlorophyll binding, GO:0018298 - protein-chromophore linkage, GO:0009416 - response to light stimulus, GO:0009941 - chloroplast envelope, GO:0009535 - chloroplast thylakoid membrane, GO:0010287 - plastoglobule, GO:0016021 - integral to membrane, GO:0009523 - photosystem II, GO:0009768 - photosynthesis, light harvesting in photosystem I		
22719	RBP10	OsRBP10, RBP-10, OsRBP-10, OsDWD42, DWD42	RNA-BINDING PROTEIN 10	RNA-Binding Protein 10, DWD motif- containing protein 42	RNA-BINDING PROTEIN 10		11	LOC_Os11g43890. a WD domain, a G-beta repeat domain-containing protein.		Os11g0660300	LOC_Os11g43890.1						
22720	RBP213	OsRBP213, RBP-213, OsRBP-213	RNA-BINDING PROTEIN 213	RNA-Binding Protein 213	RNA-BINDING PROTEIN 213		1	LOC_Os01g12840.		Os01g0228800	LOC_Os01g12840.1						
22721	_		_	PPR repeat domain-containing protein			1	LOC_Os01g05860.		Os01g0151900	LOC_Os01g05860.1				GO:0022626 - cytosolic ribosome		
22722	_		_	ATPase			8	LOC_Os08g40555.									
22723	_		_	ribosomal protein			1	LOC_Os01g70010.		Os01g0924800	LOC_Os01g70010.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0042254 - ribosome biogenesis, GO:0003723 - RNA binding, GO:0005840 - ribosome, GO:0000470 - maturation of LSU-rRNA		
22724	_	qTGW1.2a	_	glycine-rich cell wall protein			1	LOC_Os01g57250 is a negative regulator of TGW (thousand grain weight ) and is likely the causal gene underlying the QTL qTGW1.2a (Shang et al. 2022).	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os01g0780900	LOC_Os01g57250.1					TO:0000382 - 1000-seed weight	
22725	_	GLU4, OsGLU4	_	glutelin, Glutelin 4			2		 Seed - Physiological traits - Storage substances	Os02g0456100	LOC_Os02g25860.1				GO:0045735 - nutrient reservoir activity		
22726	NHL25	OsNHL25	_	NDR1/HIN1-1ike gene 25			1	LOC_Os01g59680.		Os01g0812100	LOC_Os01g59680.1				GO:0016021 - integral to membrane		
22727	DEFL15	OsDEFL15	DEFENSIN-LIKE 15	defensin family protein, defensin-like 15	DEFENSIN-LIKE 15		11				LOC_Os11g45360.1						
22728	DEFL43	OsDEFL43	DEFENSIN-LIKE 43	defensin family protein, defensin-like 43	DEFENSIN-LIKE 43		12			Os12g0223700	LOC_Os12g12230.1						
22729	SPP1	OsSPP1	SIGNAL PEPTIDE PEPTIDASE 1	signal peptide peptidase 1	SIGNAL PEPTIDE PEPTIDASE 1		2	LOC_Os02g02530. Q6ZGL9. GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane. GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane.	 Biochemical character	Os02g0117400	LOC_Os02g02530.1, LOC_Os02g02530.2, LOC_Os02g02530.3				GO:0005783 - endoplasmic reticulum, GO:0042500 - aspartic endopeptidase activity, intramembrane cleaving, GO:0033619 - membrane protein proteolysis, GO:0006465 - signal peptide processing		
22730	SPP2	OsSPP2	SIGNAL PEPTIDE PEPTIDASE 2	signal peptide peptidase 2	SIGNAL PEPTIDE PEPTIDASE 2		5	LOC_Os05g36070. B9FJ61. GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane. GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane.	 Biochemical character	Os05g0436400	LOC_Os05g36070.1, LOC_Os05g36070.2, LOC_Os05g36070.3				GO:0033619 - membrane protein proteolysis, GO:0005783 - endoplasmic reticulum, GO:0042500 - aspartic endopeptidase activity, intramembrane cleaving, GO:0006465 - signal peptide processing		
22731	SRP32	Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32	SERINE/ARGININE-RICH PROTEIN 32	Serine/Arginine-Rich Protein Splicing Factor 32, Serine/Arginine-Rich Protein 32, SR Protein 32, SR subfamily protein 32	SERINE/ARGININE-RICH PROTEIN 32		3	LOC_Os03g22380.	 Tolerance and resistance - Stress tolerance	Os03g0344100	LOC_Os03g22380.1, LOC_Os03g22380.2, LOC_Os03g22380.3				GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0016607 - nuclear speck, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0003723 - RNA binding		
22732	SRP33A	Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a, OsSR34, SR34	SERINE/ARGININE-RICH PROTEIN 33A	Serine/Arginine-Rich Protein Splicing Factor 33a, Serine/Arginine-Rich Protein 33a, SR Protein 33a, SR subfamily protein 33a	SERINE/ARGININE-RICH PROTEIN 33A		5	OsSR34 in Jung et al. 2023.	 Tolerance and resistance - Stress tolerance	Os05g0364600	LOC_Os05g30140.1, LOC_Os05g30140.2				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0009737 - response to abscisic acid stimulus, GO:0000380 - alternative nuclear mRNA splicing, via spliceosome, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0045292 - nuclear mRNA cis splicing, via spliceosome	TO:0000615 - abscisic acid sensitivity	
22733	SRP33B	Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b	SERINE/ARGININE-RICH PROTEIN 33B	Serine/Arginine-Rich Protein Splicing Factor 33b, Serine/Arginine-Rich Protein 33b, SR Protein 33b, SR subfamily protein 33b	SERINE/ARGININE-RICH PROTEIN 33B	sr33	7	LOC_Os07g47630. Os-SR33 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0673500	LOC_Os07g47630.1, LOC_Os07g47630.2, LOC_Os07g47630.3, LOC_Os07g47630.4, LOC_Os07g47630.6, LOC_Os07g47630.7, LOC_Os07g47630.8				GO:0055062 - phosphate ion homeostasis, GO:0042594 - response to starvation, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus		
22734	SRP20	Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20, SF2, OsSF2	SERINE/ARGININE-RICH PROTEIN 20	Serine/Arginine-Rich Protein Splicing Factor 20, Serine/Arginine-Rich Protein 20, SR Protein 20, SR subfamily protein 20, pre-mRNA splicing factor SF2	SERINE/ARGININE-RICH PROTEIN 20	sr40	1	Os-SR40 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content.  	 Tolerance and resistance - Stress tolerance	Os01g0316550	LOC_Os01g21420.1				GO:0042594 - response to starvation, GO:0055062 - phosphate ion homeostasis, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
22735	RSZP21A	Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a, RSZp21a	_	RS domain with zinc knuckle protein 21A, RSZ subfamily protein 21A	_	rsz21a	6	Q69KL9. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os06g0187900	LOC_Os06g08840.8, LOC_Os06g08840.7, LOC_Os06g08840.6, LOC_Os06g08840.5, LOC_Os06g08840.4, LOC_Os06g08840.3, LOC_Os06g08840.2, LOC_Os06g08840.1				GO:0005634 - nucleus, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0042594 - response to starvation, GO:0016607 - nuclear speck		
22736	RSZP21B	Os-RSZ21, OsRSZ21, RSZ21, Os-RSZp21b, OsRSZp21b, RSZp21b	_	RS domain with zinc knuckle protein 21B, RSZ subfamily protein 21B	_		2	Q6K4N0. Os-RSZ21 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os02g0789400	LOC_Os02g54770.2, LOC_Os02g54770.1				GO:0003723 - RNA binding, GO:0042594 - response to starvation, GO:0016607 - nuclear speck, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		
22737	RSZP23	Os-RSZ23, OsRSZ23, Os-RSZp23, OsRSZp23, RSZp23	_	RS domain with zinc knuckle protein 23, RSZ subfamily protein 23	_		2	Q6K9C3.		Os02g0610600	LOC_Os02g39720.2, LOC_Os02g39720.3, LOC_Os02g39720.4, LOC_Os02g39720.6				GO:0003723 - RNA binding, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0016607 - nuclear speck, GO:0008270 - zinc ion binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome		
22738	SC35A	Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a	_	SC subfamily protein 35a	_		6	LOC_Os08g37960. Os-SC34 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os08g0486200	LOC_Os08g37960.1, LOC_Os08g37960.2, LOC_Os08g37960.3				GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0005737 - cytoplasm, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22739	SC35B	OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b	_	SC subfamily protein 35b	_		7	LOC_Os07g43050. Os-SC32 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os07g0623300	LOC_Os07g43050.1, LOC_Os07g43050.2, LOC_Os07g43050.3				GO:0005737 - cytoplasm, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0042594 - response to starvation, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus		
22740	SC35C	Os-SC25, OsSC25, Os-SC35c, OsSC35c	_	SC subfamily protein 35c	_		3	LOC_Os03g27030. Os-SC25 in Barta et al. 2010.		Os03g0388000	LOC_Os03g27030.1, LOC_Os03g27030.2, LOC_Os03g27030.3				GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0005737 - cytoplasm, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0016607 - nuclear speck		
22741	SCL25	Os-SCL25, OsSCL25	SC35-LIKE PROTEIN 25	SC35-like protein 25, SCL subfamily protein 25	SC35-LIKE PROTEIN 25	scl25, scl25-1	7	TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os07g0633200	LOC_Os07g43950.1				GO:0042594 - response to starvation, GO:0000395 - nuclear mRNA 5'-splice site recognition, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0016607 - nuclear speck		
22742	SCL26	Os-SCL26, OsSCL26	SC35-LIKE PROTEIN 26	SC35-like protein 26, SCL subfamily protein 26	SC35-LIKE PROTEIN 26	scl26, osscl26	3	TO:0020102: phosphate content. GO:2000185: regulation of phosphate transmembrane transport. TO:0020114: shoot system phosphorus content.	 Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0374575	LOC_Os03g25770.1, LOC_Os03g25770.2				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0042594 - response to starvation, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0010966 - regulation of phosphate transport, GO:0055062 - phosphate ion homeostasis, GO:0005634 - nucleus, GO:0000395 - nuclear mRNA 5'-splice site recognition	TO:0001024 - phosphorus content, TO:0000636 - relative shoot dry weight, TO:0000644 - relative root dry weight, TO:0000516 - relative root length, TO:0001034 - relative plant height, TO:0000078 - root dry weight, TO:0000227 - root length, TO:0000552 - shoot dry weight, TO:0000207 - plant height, TO:0000511 - phosphorus uptake	PO:0020141 - stem node , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0005020 - vascular bundle , PO:0009005 - root 
22743	SCL30A	Os-SCL30a, OsSCL30a, SCL30a	SC35-LIKE PROTEIN 30A	SC35-like protein 30a, SCL subfamily protein 30a	SC35-LIKE PROTEIN 30A		2		 Tolerance and resistance - Stress tolerance	Os02g0252100	LOC_Os02g15310.1, LOC_Os02g15310.2, LOC_Os02g15310.3, LOC_Os02g15310.4				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0042594 - response to starvation, GO:0005634 - nucleus, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome		
22744	SCL28	Os-SCL28, OsSCL28	SC35-LIKE PROTEIN 28	SC35-like protein 28, SCL subfamily protein 28	SC35-LIKE PROTEIN 28		3			Os03g0363800	LOC_Os03g24890.1, LOC_Os03g24890.2				GO:0016607 - nuclear speck, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0045292 - nuclear mRNA cis splicing, via spliceosome		
22745	SCL57	Os-SCL57, OsSCL57	SC35-LIKE PROTEIN 57	SC35-like protein 57, SCL subfamily protein 57	SC35-LIKE PROTEIN 57	scl57	11	TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os11g0704700	LOC_Os11g47830.1, LOC_Os11g47830.2				GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0055062 - phosphate ion homeostasis, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22746	RSZP36	Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36	_	RS domain with zinc knuckle protein 36, RSZ subfamily protein 36, RS2Z subfamily protein 36	_	rs2z36	5	LOC_Os05g02880. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os05g0120100	LOC_Os05g02880.1				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0016607 - nuclear speck, GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0055062 - phosphate ion homeostasis, GO:0003729 - mRNA binding, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding		
22747	RSZP37A	Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a	_	RS domain with zinc knuckle protein 37a, RSZ subfamily protein 37a, RS2Z subfamily protein 37	_		1	LOC_Os01g06290. Os-RS2Z37 in Barta et al. 2010, Dong et al. 2018.	 Tolerance and resistance - Stress tolerance	Os01g0155600	LOC_Os01g06290.1, LOC_Os01g06290.2, LOC_Os01g06290.3, LOC_Os01g06290.4				GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0042594 - response to starvation, GO:0003729 - mRNA binding, GO:0008270 - zinc ion binding, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus		
22748	RSZP37B	Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b	_	RS domain with zinc knuckle protein 37b, RSZ subfamily protein 37b, RS2Z subfamily protein 38	_	rs2z38	3	LOC_Os03g17710. Os-RS2Z38 in Barta et al. 2010, Dong et al. 2018. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance	Os03g0285900	LOC_Os03g17710.1, LOC_Os03g17710.2				GO:0005634 - nucleus, GO:0042594 - response to starvation, GO:0003729 - mRNA binding, GO:0008270 - zinc ion binding, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0055062 - phosphate ion homeostasis, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22749	RSZP39	Os-RS2Z39, OsRS2Z39, Os-RSZ39, OsRSZ39	_	RS domain with zinc knuckle protein 39, RSZ subfamily protein 39, RS2Z subfamily protein 39	_		5	LOC_Os05g07000. 		Os05g0162600	LOC_Os05g07000.1				GO:0016607 - nuclear speck, GO:0008270 - zinc ion binding, GO:0003729 - mRNA binding, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding		
22750	RSP29	OsRS29, Os-RS29, OsRSp29, Os-RSp29, RSp29	RS domain protein 29	RS domain protein 29, RS subfamily protein 29, SR-rich splicing factor 29, Serine/arginine-rich splicing factor 29	RS domain protein 29	rs29	4	TO:0020091: manganese content.		Os04g0118900	LOC_Os04g02870.1, LOC_Os04g02870.2, LOC_Os04g02870.3, LOC_Os04g02870.4				GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0005634 - nucleus, GO:0005681 - spliceosomal complex, GO:0016607 - nuclear speck, GO:0003723 - RNA binding, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome		
22751	RSP33	OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2	RS domain protein 33	RS domain protein 33, RS subfamily protein 33, Serine/arginine-rich splicing factor 33, SR-rich splicing factor 33	RS domain protein 33	rs33, rs33-1	2	TO:0006053: zinc concentration.GO:0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance	Os02g0122800	LOC_Os02g03040.1, LOC_Os02g03040.2, LOC_Os02g03040.3, LOC_Os02g03040.4				GO:0009651 - response to salt stress, GO:0006829 - zinc ion transport, GO:0005634 - nucleus, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0003723 - RNA binding, GO:0016607 - nuclear speck, GO:0005681 - spliceosomal complex, GO:0042594 - response to starvation, GO:0009409 - response to cold, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
22752	_		_	leucine-rich repeat (LRR)-containing protein			1		 Tolerance and resistance - Stress tolerance	Os01g0162300	LOC_Os01g06876.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22753	_		_	leucine-rich repeat (LRR)-containing protein			1	CT837766.	 Tolerance and resistance - Stress tolerance	Os02g0138000	LOC_Os02g04540.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22754	_		_	leucine-rich repeat (LRR)-containing protein			1		 Tolerance and resistance - Stress tolerance	Os05g0406800	LOC_Os05g33690.1, LOC_Os05g33690.3				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22755	_		_	leucine-rich repeat (LRR)-containing protein			1		 Tolerance and resistance - Stress tolerance	Os03g0637600	LOC_Os03g43650.1				GO:0009409 - response to cold, GO:0016301 - kinase activity	TO:0000303 - cold tolerance	
22756	_		_				10		 Tolerance and resistance - Stress tolerance	Os10g0343100	LOC_Os10g20240.1				GO:0048193 - Golgi vesicle transport, GO:0009409 - response to cold, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance	
22757	GATL6	OsGATL6, OsGT8, GT8	GALACTURONOSYLTRANSFERASE-LIKE 6	galacturonosyltransferase-like 6	GALACTURONOSYLTRANSFERASE-LIKE 6		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0739400	LOC_Os02g50600.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0005794 - Golgi apparatus, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22758	TRZ2	OsaTRZ2, OsTRZ2	TRNASE Z2 	tRNase Z2	TRNASE Z2 	osatrz2	9		 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os09g0482680	LOC_Os09g30466.1				GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0042781 - 3'-tRNA processing endoribonuclease activity, GO:0006351 - transcription, DNA-dependent, GO:0009507 - chloroplast, GO:0042793 - transcription from plastid promoter	TO:0002714 - plastid development trait, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000326 - leaf color	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0005052 - plant callus , PO:0000003 - whole plant 
22759	_		_				8		 Tolerance and resistance - Stress tolerance	Os08g0191900	LOC_Os08g09270.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22760	_		_				3		 Tolerance and resistance - Stress tolerance	Os03g0411300	LOC_Os03g29770.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
22761	_		_	MYB transcription factor			7	GO:0044212: transcription regulatory region DNA binding. GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os07g0484700	LOC_Os07g30130.1, LOC_Os07g30130.2, LOC_Os07g30130.3, LOC_Os07g30130.4				GO:0010039 - response to iron ion, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0030154 - cell differentiation	TO:0000224 - iron sensitivity	
22762	_		_				8	LOC_Os08g41460 is highly homologous to Ob08g19210 (O. brachyantha) and the pseudogene sequence in Cen8 region. In the cases within the rice Cen8 region, two genes (homologs of O. brachyantha Ob08g19210 and Ob08g19230) were lost, while remnants of homolog of Ob08g19210 were observed in the corresponding syntenic region of O. sativa Cen8. Its orthologous gene is syntenically conserved at the Cen8 region in O. brachyantha (Ob08g19210), O. punctata (Opunc08g09410), and L. perrieri. Os08g41460 may be the derived copy (acceptor) which  appears to have originated from an insertion event by the double-strand break repair through nonhomologous ending joining (Liao et al. 2018).		Os08g0526300	LOC_Os08g41460.1, LOC_Os08g41460.2, LOC_Os08g41460.3, LOC_Os08g41460.4, LOC_Os08g41460.5, LOC_Os08g41460.6, LOC_Os08g41460.8, LOC_Os08g41460.9				GO:0009773 - photosynthetic electron transport in photosystem I, GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0016730 - oxidoreductase activity, acting on iron-sulfur proteins as donors		
22764	BTBN19	OsBTBN19	BTB-TYPE E3 UBIQUITIN LIGASE N19	BTB domain containing protein, BTB-type E3 ubiquitin ligase N19	BTB-TYPE E3 UBIQUITIN LIGASE N19		9	GO:0060918: auxin transport. GO:0099402: plant organ development. a gene in rice zygotes with paternal allele-dependent expression.		Os09g0420900	LOC_Os09g25330.1				GO:0016567 - protein ubiquitination		
22765	PMEI14	INVINH/PMEI, OsPMEI14	PECTIN METHYLESTERASE INHIBITOR 14	Invertase inhibitor/pectin methylesterase inhibitor (INVINH/PMEI) homolog, PME inhibitor 14, pectin methylesterase inhibitor 14	PECTIN METHYLESTERASE INHIBITOR 14		3		 Biochemical character	Os03g0639400	LOC_Os03g43820.1				GO:0048316 - seed development, GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		PO:0009089 - endosperm , PO:0009010 - seed , PO:0001170 - seed development stage 
22766	_		_				7		 Biochemical character	Os07g0240200	LOC_Os07g13580.1, LOC_Os07g13580.2				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0046658 - anchored to plasma membrane, GO:0005975 - carbohydrate metabolic process		
22767	MATE16	OsMATE16	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 16	multidrug and toxic compound extrusion 16	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 16		3	TO:0001109: grain color trait.	 Coloration - Anthocyanin,  Biochemical character,  Seed - Morphological traits	Os03g0626700	LOC_Os03g42830.1				GO:0005773 - vacuole, GO:0015297 - antiporter activity, GO:0042910 - xenobiotic transporter activity, GO:0006855 - multidrug transport, GO:0016021 - integral to membrane	TO:0000071 - anthocyanin content	
22768	_		_				4			Os04g0685400	LOC_Os04g58860.1				GO:0046658 - anchored to plasma membrane, GO:0016021 - integral to membrane		
22769	_		_				12			Os12g0630500	LOC_Os12g43490.1						
22770	ACOT 	OsACOT	ACYL-COA THIOESTERASE	Acyl-CoA thioesterase	ACYL-COA THIOESTERASE		4	miR1432 target gene. TO:0020106: Indole-3-acetic acid content.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character	Os04g0436100	LOC_Os04g35590.1				GO:0009269 - response to desiccation, GO:0047617 - acyl-CoA hydrolase activity, GO:0019217 - regulation of fatty acid metabolic process, GO:0005777 - peroxisome	TO:0000397 - grain size, TO:0000590 - grain weight, TO:0002759 - grain number, TO:0000394 - drought related trait, TO:0000396 - grain yield, TO:0000592 - 1000-dehulled grain weight, TO:0000734 - grain length, TO:0000149 - seed width, TO:0000304 - seed thickness, TO:0002667 - abscisic acid content, TO:0002672 - auxin content	PO:0009005 - root , PO:0009010 - seed 
22771	TARL1	OsTAA1, TAA1, OsTAA1;4, TAA1;4, OsTARL1, OsTAA1;3, TAA1;3	TRYPTOPHAN AMINOTRANSFERASE RELATED-LIKE 1		TRYPTOPHAN AMINOTRANSFERASE RELATED-LIKE 1		1	TSG1 homolog. OsTAA1;3 in Li et al. 2022.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0717700	LOC_Os01g52010.1				GO:0016846 - carbon-sulfur lyase activity, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0009408 - response to heat	TO:0000259 - heat tolerance	
22773	_	OsADT, ADT	_	arogenate dehydratase			4		 Biochemical character	Os04g0406600	LOC_Os04g33390.1				GO:0009570 - chloroplast stroma, GO:0009094 - L-phenylalanine biosynthetic process, GO:0004664 - prephenate dehydratase activity, GO:0009507 - chloroplast, GO:0047769 - arogenate dehydratase activity		
22774	PPAAT	OsPPA-AT, PPA-AT	PREPHENATE AMINOTRANSFERASE	prephenate aminotransferase	PREPHENATE AMINOTRANSFERASE		1		 Biochemical character	Os01g0871300 	LOC_Os01g65090.1, LOC_Os01g65090.2				GO:0009570 - chloroplast stroma, GO:0033854 - glutamate-prephenate aminotransferase activity, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0030170 - pyridoxal phosphate binding, GO:0009095 - aromatic amino acid family biosynthetic process, prephenate pathway, GO:0009793 - embryonic development ending in seed dormancy, GO:0033853 - aspartate-prephenate aminotransferase activity		
22775	_	5C700	_				5	a homolog of OsLEA5. 5C subgroup of LEAs.		Os05g0526700	LOC_Os05g45070.1				GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane	TO:0000615 - abscisic acid sensitivity	
22776	_	5C300	_				5	a homolog of OsLEA5. 5C subgroup of LEAs.		Os05g0584300 	LOC_Os05g50720.1				GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity	
22777	PRN	OsPRN	PIRIN	OsPIRIN, pirin-like protein	PIRIN		3	LOC_Os03g62790.		Os03g0845000	LOC_Os03g62790.1, LOC_Os03g62790.2				GO:0009507 - chloroplast		
22778	GRAS46	OsGRAS44, OsGRAS-44, GRAS-44, GRAS44, OsGRAS-46, OsGRAS46, GRAS-46	GRAS PROTEIN 46	GRAS family transcription factor domain-containing protein 44, GRAS protein 46	GRAS PROTEIN 46		11	OsGRAS44 in Park et al. 2018, Dutta et al. 2021.	 Tolerance and resistance - Disease resistance	Os11g0705200	LOC_Os11g47870.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance	
22779	GRAS2	OsGRAS-2, OsGRAS2, GRAS-2	GRAS PROTEIN 2	GRAS protein 2	GRAS PROTEIN 2		1		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0842200	LOC_Os01g62460.1, LOC_Os01g62460.2, LOC_Os01g62460.3				GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance	PO:0025034 - leaf 
22780	GRAS4	OsGRAS-4, OsGRAS4, GRAS-4	GRAS PROTEIN 4	GRAS protein 4	GRAS PROTEIN 4		1	LOC_Os01g67650.									
22781	GRAS5	OsGRAS-5, OsGRAS5, GRAS-5	GRAS PROTEIN 5	GRAS protein 5	GRAS PROTEIN 5		1	LOC_Os01g67670.									
22782	GRAS6	OsGRAS-6, OsGRAS6, GRAS-6, OsGRAS5, GRAS5	GRAS PROTEIN 6	GRAS protein 6	GRAS PROTEIN 6		1	OsGRAS5 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0948200	LOC_Os01g71970.1				GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0003712 - transcription cofactor activity, GO:0050832 - defense response to fungus	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance	
22783	GRAS7	OsGRAS-7, OsGRAS7, GRAS-7	GRAS PROTEIN 7	GRAS protein 7	GRAS PROTEIN 7		2		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0197300	LOC_Os02g10360.1				GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0010014 - meristem initiation, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
22784	GRAS10	OsGRAS-10, OsGRAS10, GRAS-10	GRAS PROTEIN 10	GRAS protein 10	GRAS PROTEIN 10		2	BI799129.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0681900	LOC_Os02g45760.1				GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity	
22785	GRAS11	OsGRAS-11, OsGRAS11, GRAS-11	GRAS PROTEIN 11	GRAS protein 11	GRAS PROTEIN 11		3	OsGRAS-11 appears to encode a functional copy in indica, but a putative pseudo-gene in japonica.									
22786	GRAS12	OsGRAS-12, OsGRAS12, GRAS-12, OsGRAS11, GRAS11	GRAS PROTEIN 12	GRAS protein 12	GRAS PROTEIN 12		3	OsGRAS11 Dutta et al. 2021.	 Tolerance and resistance - Disease resistance	Os03g0193000	LOC_Os03g09280.3, LOC_Os03g09280.2, LOC_Os03g09280.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
22788	GRAS20	OsGRAS-20, OsGRAS20, GRAS-20, OsGRAS19, GRAS19	GRAS PROTEIN 20	GRAS protein 20	GRAS PROTEIN 20		4	OsGRAS19 in Dutta et al. 2021.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0432100	LOC_Os04g35250.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0003700 - transcription factor activity	TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000175 - bacterial blight disease resistance	
22789	GRAS22	OsGRAS-22, OsGRAS22, GRAS-22	GRAS PROTEIN 22	GRAS protein 22	GRAS PROTEIN 22		4			Os04g0580300	LOC_Os04g49110.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
22790	GRAS24	OsGRAS-24, OsGRAS24, GRAS-24	GRAS PROTEIN 24	GRAS protein 24	GRAS PROTEIN 24		5										
22791	GRAS25	OsGRAS-25, OsGRAS25, GRAS-25	GRAS PROTEIN 25	GRAS protein 25	GRAS PROTEIN 25		5										
22792	GRAS26	OsGRAS-26, OsGRAS26, GRAS-26, DLN137, OsDLN137, OsGRAS23, GRAS23	GRAS PROTEIN 26	GRAS protein 26, DLN repressor 137, DLN motif protein 137	GRAS PROTEIN 26		5	OsGRAS23 in Dutta et al. 2021.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0378200	LOC_Os05g31380.1				GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance	
22793	GRAS27	OsGRAS-27, OsGRAS27, GRAS-27, OsGRAS24, GRAS24	GRAS PROTEIN 27	GRAS protein 27	GRAS PROTEIN 27		5	OsGRAS24 in Dutta et al. 2021.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0378500	LOC_Os05g31420.1				GO:0003712 - transcription cofactor activity, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity	
22794	GRAS28	OsGRAS-28, OsGRAS28, GRAS-28, OsGRAS25, GRAS25	GRAS PROTEIN 28	GRAS protein 28	GRAS PROTEIN 28		5	OsGRAS25 in Dutta et al. 2021.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0485400	LOC_Os05g40710.1				GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
22795	GRAS29	OsGRAS-29, OsGRAS29, GRAS-29, OsGRAS26, GRAS26	GRAS PROTEIN 29	GRAS protein 29	GRAS PROTEIN 29		5	OsGRAS26 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0500600	LOC_Os05g42130.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance	
22796	GRAS35	OsGRAS-35, OsGRAS35, GRAS-35, OsGRAS32, GRAS32	GRAS PROTEIN 35	GRAS protein 35	GRAS PROTEIN 35		7	GO:0090610: bundle sheath cell fate specification. OsGRAS32 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance	Os07g0567700	LOC_Os07g38030.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0048366 - leaf development, GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance	
22797	GRAS37	OsGRAS-37, OsGRAS37, GRAS-37, OsGRAS35, GRAS35	GRAS PROTEIN 37	GRAS protein 37	GRAS PROTEIN 37		7	OsGRAS35 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0589200	LOC_Os07g40020.1				GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
22798	GRAS42	OsGRAS-42, OsGRAS42, GRAS-42, PsiOsGRAS8, PsiGRAS8	GRAS PROTEIN 42	GRAS protein 42	GRAS PROTEIN 42		11	D23637. PsiOsGRAS8  in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0139600	LOC_Os11g04400.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance	
22799	GRAS43	OsGRAS-43, OsGRAS43, GRAS-43, OsGRAS39, GRAS39	GRAS PROTEIN 43	GRAS protein 43	GRAS PROTEIN 43		11	OsGRAS39 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0141550	LOC_Os11g04570.1				GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding	TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root 
22800	GRAS44	OsGRAS-44, OsGRAS44, GRAS-44	GRAS PROTEIN 44	GRAS protein 44	GRAS PROTEIN 44		11			Os11g0141700	LOC_Os11g04590.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22801	GRAS48	OsGRAS-48, OsGRAS48, GRAS-48	GRAS PROTEIN 48	GRAS protein 48	GRAS PROTEIN 48		11			Os11g0705900	LOC_Os11g47900.1				GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		
22802	GRAS49	OsGRAS-49, OsGRAS49, GRAS-49, OsGRAS47, GRAS47	GRAS PROTEIN 49	GRAS protein 49	GRAS PROTEIN 49		11	OsGRAS47 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance						GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	PO:0009005 - root , PO:0009046 - flower 
22803	GRAS50	OsGRAS-50, OsGRAS50, GRAS-50	GRAS PROTEIN 50	GRAS protein 50	GRAS PROTEIN 50		11			Os11g0706200	LOC_Os11g47920.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22804	GRAS53	OsGRAS-53, OsGRAS53, GRAS-53	GRAS PROTEIN 53	GRAS protein 53	GRAS PROTEIN 53		12			Os12g0138100/Os12g0138166	LOC_Os12g04370.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
22805	GRAS54	OsGRAS-54, OsGRAS54, GRAS-54	GRAS PROTEIN 54	GRAS protein 54	GRAS PROTEIN 54		12			Os12g0138200	LOC_Os12g04380.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22806	GRAS55	OsGRAS-55, OsGRAS55, GRAS-55, PsiOsGRAS10, PsiGRAS10	GRAS PROTEIN 55	GRAS protein 55	GRAS PROTEIN 55		12	PsiOsGRAS10 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance	Os12g0162700	LOC_Os12g06540.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
22807	GRAS56	OsGRAS-56, OsGRAS56, GRAS-56, DLN259, OsDLN259, OsGRAS53, GRAS53	GRAS PROTEIN 56	GRAS protein 56, DLN repressor 259, DLN motif protein 259	GRAS PROTEIN 56		12	CA999102. OsGRAS53 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance	Os12g0573200	LOC_Os12g38490.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
22809	GRAS31	OsGRAS-31, OsGRAS31, GRAS-31, OsGRAS28, GRAS28, SCL6-I, OsSCL6-I	GRAS PROTEIN 31	GRAS protein 31, SCARECROW-LIKE6-I	GRAS PROTEIN 31		5	OsGRAS28 in Dutta et al. 2021. PO:0030117: spike inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0105350	LOC_Os06g01620.1				GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0043565 - sequence-specific DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity	TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009046 - flower , PO:0009049 - inflorescence 
22810	GRAS39	OsGRAS-39, OsGRAS39, GRAS-39	GRAS PROTEIN 39	GRAS protein 39	GRAS PROTEIN 39		10	CB211621 (Oryza minuta cDNA).		Os10g0369600	LOC_Os10g22430.1, LOC_Os10g22430.2				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22811	GRAS40	OsGRAS-40, OsGRAS40, GRAS-40	GRAS PROTEIN 40	GRAS protein 40	GRAS PROTEIN 40		10	AU183195.		Os10g0551200	LOC_Os10g40390.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		
22812	GRAS45	OsGRAS-45, OsGRAS45, GRAS-45, DLN246, OsDLN246, OsGRAS41, GRAS41	GRAS PROTEIN 45	GRAS protein 45, DLN repressor 246, DLN motif protein 246	GRAS PROTEIN 45		11	CA762305. OsGRAS41 in Dutta et al. 2021.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0160550/Os11g0160600	LOC_Os11g06180.1				GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus	TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance	
22813	GRAS47	OsGRAS-47, OsGRAS47, GRAS-47, HINGE4, OsHINGE4	GRAS PROTEIN 47	GRAS protein 47, Highly Induced by Nitrate Gene 4	GRAS PROTEIN 47		11	CA756197. TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance		LOC_Os11g47890.1				GO:0010167 - response to nitrate		
22814	GRAS52	OsGRAS-52, OsGRAS52, GRAS-52	GRAS PROTEIN 52	GRAS protein 52	GRAS PROTEIN 52		12	LOC_Os12g04200. D23637.									
22815	GRAS57	OsGRAS-57, OsGRAS57, GRAS-57	GRAS PROTEIN 57	GRAS protein 57	GRAS PROTEIN 57			One putative gene (OsGRAS-57) was not detected in japonica (Tian et al. 2004).									
22816	SAC1	OsSAC1	SUGAR ACCUMULATION 1	sugar accumulation 1		ossac1	7	GO:0061458: reproductive system development. GO:0080186: developmental vegetative growth.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os07g0116300	LOC_Os07g02520.1				GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum	TO:0000592 - 1000-dehulled grain weight, TO:0000328 - sucrose content, TO:0000696 - starch content, TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0000180 - spikelet fertility, TO:0000040 - panicle length, TO:0000339 - stem thickness, TO:0000576 - stem length, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000300 - glucose content, TO:0000495 - chlorophyll content, TO:0001015 - photosynthetic rate, TO:0000382 - 1000-seed weight, TO:0000333 - sugar content	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22817	_	Cyt b6, OsCytb6, Cytb6	_	Cytochrome b6			1	homologous to ATCG00720 (PETB).			LOC_Os01g57942.1						
22818	_		_	photosynthetic reaction center protein			8	homologous to ATCG00020 (PSBA).			LOC_Os08g35420.1						
22820	_	OsSTA171	_				6	a mature anther-preferentially expressed gene. LOC_Os06g08680.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0186000	LOC_Os06g08680.1						PO:0009066 - anther 
22821	UGT93B	OsUGT93B	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 93B	UDP-glucose-dependent glycosyltransferase 93B	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 93B		4		 Biochemical character	Os04g0556400	LOC_Os04g46970.1				GO:0016758 - transferase activity, transferring hexosyl groups, GO:0043231 - intracellular membrane-bounded organelle, GO:0008194 - UDP-glycosyltransferase activity		
22822	PRO13B.10	pro13b.10, OsPRO13B.10	13 KDA PROLAMIN B.10	13 kDa prolamin B.10	13 KDA PROLAMIN B.10		5		 Seed - Physiological traits - Storage substances	Os05g0329001 					GO:0005783 - endoplasmic reticulum, GO:0042735 - protein body		PO:0009089 - endosperm 
22823	ESP	OsESP	EPIGENETIC SHORT PANICLE	Epigenetic Short Panicle		Epi-sp	1	Epi-sp is a gain-of-function epiallele of the rice ESP (long noncoding RNA). TO:0000847: panicle inflorescence morphology trait.	 Reproductive organ - panicle	Os01g0356951						TO:0000040 - panicle length, TO:0006032 - panicle size, TO:0000207 - plant height	
22824	LG1	OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1	LARGE GRAIN 1	large grain1, large grain 1, ubiquitin-specific protease15, ubiquitin-specific processing protease 7-1	UBIQUITIN-SPECIFIC PROTEASE 15	Osubp15, lg1-D, lg1-1, lg1-2		TO:0000975: grain width. OsUBP7-1 in Wnag et al. 2018. OsUBP15 in Shi et al. 2019, Ma et al. 2019.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os02g0244300	LOC_Os02g14730.1				GO:0008285 - negative regulation of cell proliferation	TO:0000397 - grain size, TO:0000592 - 1000-dehulled grain weight, TO:0000396 - grain yield, TO:0000149 - seed width	PO:0009029 - stamen 
22825	DA1	OsDA1, HDR6, OsHDR6	_	homolog of DA1 on rice chromosome 6			6	"a homolog of Arabidopsis DA1 (ubiquitin receptor, DA means \"large\" in Chinese)."		Os06g0182500	LOC_Os06g08400.1, LOC_Os06g08400.2				GO:0043130 - ubiquitin binding, GO:0046872 - metal ion binding		
22826	NCA1B	OsNCA1b, NCA1b, OsRING2, RING2	NO CATALASE ACTIVITY 1B	RING-type E3 ubiquitin ligase 2		nca1b	2	nca1a/nca1b double mutant displayed obvious lesion and even albino symptoms on leaves throughout the growth stages (Liu et al. 2019).	 Vegetative organ - Leaf	Os02g0795300	LOC_Os02g55200.1, LOC_Os02g55200.2					TO:0000326 - leaf color	PO:0025034 - leaf 
22827	WLS5	OsWLS5	WEAKNESS AND LEAF SENESCENCE 5	weakness and leaf senescence5		wls5	5	TO:0000892: stem size. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os05g0141050	LOC_Os05g04900.1				GO:0010150 - leaf senescence, GO:0015996 - chlorophyll catabolic process, GO:0008283 - cell proliferation, GO:0009826 - unidimensional cell growth, GO:0009658 - chloroplast organization, GO:0009738 - abscisic acid mediated signaling	TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000249 - leaf senescence, TO:0002675 - gibberellic acid content, TO:0002668 - jasmonic acid content, TO:0002667 - abscisic acid content, TO:0000566 - stomatal frequency, TO:0000371 - yield trait	PO:0001054 - 4 leaf senescence stage 
22828	PIDB	OsPIDb, PIDb	PINOID B	PINOID b			3	the closest homolog of OsPID.		Os03g0642300	LOC_Os03g44020.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0004674 - protein serine/threonine kinase activity		
22829	AGC21	OsPIDL1, PIDL1, OsAGC21	AGC PROTEIN KINASE 21	PINOID-like 1, AGC protein kinase 21	AGC PROTEIN KINASE 21		11	OsPID homolog.	 Biochemical character	Os11g0150700	LOC_Os11g05320.1				GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus, GO:0005524 - ATP binding		
22830	WAG 	OsWAG	WAVY ROOT GROWTH 1	WAVY ROOT GROWTH1			3	OsPID homolog.		Os03g0253200	LOC_Os03g14840.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0004672 - protein kinase activity		
22831	NPY2 	OsNPY2, OsBTBN14, BTBN14	NAKED PINS IN YUC MUTANT 2	BTB-type E3 ubiquitin ligase N14		osnpy2, osnpy2-c1, osnpy2-c2	3		 Reproductive organ - Spikelet, flower, glume, awn	Os06g0184500	LOC_Os06g08550.1				GO:0010229 - inflorescence development, GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009908 - flower development, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000346 - tiller number	
22832	LR10	OsLR10	_	resistance protein LR10			4		 Tolerance and resistance - Insect resistance	Os04g0193950	LOC_Os04g11780.1				GO:0002213 - defense response to insect, GO:0043531 - ADP binding	TO:0000424 - brown planthopper resistance	
22833	VWR	OsVWR	VERTICILLIUM WILT RESISTANCE	Verticillium wilt resistance, Verticillium wilt resistance protein			4		 Tolerance and resistance - Insect resistance	Os04g0349700	LOC_Os04g28210.1				GO:0002213 - defense response to insect, GO:0016021 - integral to membrane	TO:0000424 - brown planthopper resistance	
22834	TRFL1	OsTRFL1	TELOMERE REPEAT-BINDING FACTOR LIKE 1	telomere repeat-binding factor like 1	TELOMERE REPEAT-BINDING FACTOR LIKE 1	ostrfl1	2	GO:0090567: reproductive shoot system development. GO:0080186: developmental vegetative growth. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Sterility	Os02g0776700	LOC_Os02g53670.1, LOC_Os02g53670.2, LOC_Os02g53670.3, LOC_Os02g53670.4				GO:0003677 - DNA binding, GO:0032502 - developmental process, GO:0000723 - telomere maintenance	TO:0000485 - sterility related trait	PO:0009010 - seed , PO:0005052 - plant callus , PO:0025034 - leaf , PO:0009006 - shoot system 
22835	GDCP	OsGDCP	GLYCINE DECARBOXYLASE P	Glycine decarboxylase P subunit, glycine decarboxylase P	GLYCINE DECARBOXYLASE P		6		 Biochemical character	Os06g0611900	LOC_Os06g40940.3, LOC_Os06g40940.2, LOC_Os06g40940.1				GO:0006546 - glycine catabolic process, GO:0005739 - mitochondrion, GO:0004375 - glycine dehydrogenase (decarboxylating) activity		
22836	DCM1	OsDCM1, SAW1, OsSAW1	DEFECTIVE CALLOSE IN MEIOSIS 1	defective callose in meiosis 1, swollen anther wall 1		dcm1	6		 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0638000	LOC_Os06g43120.1, LOC_Os06g43120.2				GO:0007112 - male meiosis cytokinesis, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0010584 - pollen exine formation, GO:0051294 - establishment of spindle orientation, GO:0009555 - pollen development, GO:0048658 - tapetal layer development, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0048653 - anther development, GO:0052545 - callose localization, GO:0010476 - gibberellin-mediated signaling	TO:0000053 - pollen sterility, TO:0000180 - spikelet fertility, TO:0000218 - pollen abortion type, TO:0002675 - gibberellic acid content, TO:0000437 - male sterility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
22837	PABN1	OsPABN1	POLY (A) BINDING PROTEIN 1	poly (A) binding protein 1	POLY (A) BINDING PROTEIN 1		2			Os02g0757900	LOC_Os02g52140.2, LOC_Os02g52140.1				GO:0003723 - RNA binding, GO:0016607 - nuclear speck		
22838	PABN2	OsPABN2	POLY (A) BINDING PROTEIN 2	poly (A) binding protein 2	POLY (A) BINDING PROTEIN 2		6			Os06g0219600	LOC_Os06g11620.1				GO:0003723 - RNA binding, GO:0016607 - nuclear speck		
22839	_	OsA6	_	O-Glycosyl hydrolases family 17 protein			9		 Biochemical character	Os09g0502200	LOC_Os09g32550.1, LOC_Os09g32550.2				GO:0046658 - anchored to plasma membrane, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
22840	SPK1	OsSPK1, OsGEF5, GEF5	SPIKE 1	Guanine nucleotide exchange factor 5	GUANINE NUCLEOTIDE EXCHANGE FACTOR 5		3	a DOCK family guanine nucleotide exchange factor. RhoGEF family. DOCK1 domain containing protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os03g0328000	LOC_Os03g21080.1				GO:0005085 - guanyl-nucleotide exchange factor activity, GO:0050832 - defense response to fungus, GO:0007264 - small GTPase mediated signal transduction	TO:0000074 - blast disease, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000399 - grain thickness	PO:0009049 - inflorescence 
22841	PKIWI	OsPKIWI, PKIWI502	_				2	a homolog of the Arabidopsis FNRL protein (AT1G15140). A fruit protein.	 Biochemical character	Os02g0328300 	LOC_Os02g22260.1, LOC_Os02g22260.2				GO:0016491 - oxidoreductase activity		
22842	_	SPL24	_	spotted leaf 24, spotted-leaf 24		spl24	11	OsSPL24 was in a 110 kb region flanked by markers Indel-33 and Indel-12 in chromosome 11. 9 candidate genes: LOC_Os11g34460, LOC_Os11g34470, LOC_Os11g34570, LOC_Os11g34580, LOC_Os11g34610, LOC_Os11g34624, LOC_Os11g34640, LOC_Os11g34650, LOC_Os11g34660. (Chen et al. 2018).	 Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Lesion mimic,  Coloration - Chlorophyll						GO:0012501 - programmed cell death, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0006952 - defense response, GO:0042742 - defense response to bacterium, GO:0010150 - leaf senescence	TO:0000175 - bacterial blight disease resistance, TO:0000496 - carotenoid content, TO:0000040 - panicle length, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000605 - hydrogen peroxide content, TO:0000152 - panicle number, TO:0000592 - 1000-dehulled grain weight, TO:0000249 - leaf senescence, TO:0000325 - soluble protein content, TO:0000063 - mimic response, TO:0000316 - photosynthetic ability, TO:0002667 - abscisic acid content, TO:0002668 - jasmonic acid content, TO:0000180 - spikelet fertility, TO:0000207 - plant height, TO:0000346 - tiller number	PO:0001054 - 4 leaf senescence stage 
22843	LIP1	OsLIP1	LC3-INTERACTING PROTEIN 1	LC3-interacting protein 1	LC3-INTERACTING PROTEIN 1		10	a HIT zinc finger domain-containing protein. TO: 0000829: leaf lamina morphology trait.	 Vegetative organ - Leaf	Os10g0520700	LOC_Os10g37640.2, LOC_Os10g37640.1				GO:0046872 - metal ion binding, GO:0010252 - auxin homeostasis, GO:0010930 - negative regulation of auxin mediated signaling pathway	TO:0000206 - leaf angle, TO:0000163 - auxin sensitivity, TO:0002688 - leaf lamina joint bending	
22844	BHLH168	OsbHLH168, bHLH168	BASIC HELIX-LOOP-HELIX PROTEIN 168	basic helix-loop-helix protein 168	BASIC HELIX-LOOP-HELIX PROTEIN 168		2		 Tolerance and resistance - Stress tolerance	Os02g0791300	LOC_Os02g54870.1				GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0009066 - anther 
22845	_	OsbHLH169, bHLH169	_	basic helix-loop-helix protein 169			1			Os01g0630300	LOC_Os01g43950.1						
22846	_	OsbHLH171, bHLH171	_	basic helix-loop-helix protein 171			8			Os08g0260400	LOC_Os08g16030.1						
22847	_	OsbHLH176, bHLH176	_	basic helix-loop-helix protein 176			3			Os03g0311600	LOC_Os03g19780.1						
22848	_	OsbHLH177, bHLH177	_	basic helix-loop-helix protein 177			3	CT835941.		Os08g0414500	LOC_Os08g31950.1				GO:0046983 - protein dimerization activity		PO:0009010 - seed 
22849	_	OsbHLH178, bHLH178	_	basic helix-loop-helix protein 178			7				LOC_Os07g48900.1						
22850	_	OsbHLH179, bHLH179	_	basic helix-loop-helix protein 179			12	GO:0001228: DNA-binding transcription activator activity, RNA polymerase II-specific.		Os12g0180800	LOC_Os12g08025.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity		
22851	_	OsbHLH180, bHLH180, OsSACL3C, SACL3C	_	basic helix-loop-helix protein 180			1	a member of the SAC51 family. GO:0001228: DNA-binding transcription activator activity, RNA polymerase II-specific. GO:1904583: response to polyamine macromolecule.		Os01g0626900	LOC_Os01g43680.3, LOC_Os01g43680.2, LOC_Os01g43680.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0046983 - protein dimerization activity		
22852	_	OsbHLH181, bHLH181	_	basic helix-loop-helix protein 181			12				LOC_Os12g31430.1				GO:0003677 - DNA binding, GO:0046983 - protein dimerization activity		
22853	BHLH182	OsbHLH182, bHLH182, OsFIF3, FIF3	BASIC HELIX-LOOP-HELIX PROTEIN 182	basic helix-loop-helix protein 182, FLO2 interaction factor 3	BASIC HELIX-LOOP-HELIX PROTEIN 182		1	EAY73253 (Indica). GO:0000976: transcription cis-regulatory region binding. GO:2000904: regulation of starch metabolic process.	 Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape	Os01g0243400	LOC_Os01g14110.1				GO:0005982 - starch metabolic process, GO:0046983 - protein dimerization activity, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0002658 - starch grain synthesis, TO:0000590 - grain weight, TO:0002656 - starch grain shape, TO:0000266 - chalky endosperm, TO:0000696 - starch content	PO:0009030 - carpel , PO:0009089 - endosperm , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009006 - shoot system 
22854	_	OsbHLH183, bHLH183	_	basic helix-loop-helix protein 183			1			Os01g0518300	LOC_Os01g33400.1						
22855	_	OsbHLH184, bHLH184	_	basic helix-loop-helix protein 184			12			Os12g0536300	LOC_Os12g35070.1						
22856	BHLH185	OsbHLH185, bHLH185	BASIC HELIX-LOOP-HELIX PROTEIN 185	basic helix-loop-helix protein 185	BASIC HELIX-LOOP-HELIX PROTEIN 185		1		 Tolerance and resistance - Stress tolerance	Os01g0773800	LOC_Os01g56690.1				GO:0009414 - response to water deprivation, GO:0046983 - protein dimerization activity, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance	
22857	_	OsbHLH187, bHLH187	_	basic helix-loop-helix protein 187			1	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding. GO:0090575: RNA polymerase II transcription factor complex. AK353822.		Os01g0108400	LOC_Os01g01840.1				GO:0046983 - protein dimerization activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0008134 - transcription factor binding		
22858	_	OsbHLH188, bHLH188	_	basic helix-loop-helix protein 188			7			Os07g0101200/Os07g0101300	LOC_Os07g01130.1				GO:0046983 - protein dimerization activity		
22859	UCH1	OsUCH1	UBIQUITIN C-TERMINAL HYDROLASE 1	ubiquitin C-terminal hydrolase 1	UBIQUITIN C-TERMINAL HYDROLASE 1		2		 Biochemical character	Os02g0180100	LOC_Os02g08370.1				GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm		
22860	UCH2	OsUCH2	UBIQUITIN C-TERMINAL HYDROLASE 2	ubiquitin C-terminal hydrolase 2	UBIQUITIN C-TERMINAL HYDROLASE 2		2		 Biochemical character	Os02g0180100	LOC_Os02g57630.1, LOC_Os02g57630.2, LOC_Os02g57630.3, LOC_Os02g57630.4, LOC_Os02g57630.5				GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process		
22861	UCH3	OsUCH3	UBIQUITIN C-TERMINAL HYDROLASE 3	ubiquitin C-terminal hydrolase 3	UBIQUITIN C-TERMINAL HYDROLASE 3	osuch3	2		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os02g0654500	LOC_Os02g43760.1				GO:0048443 - stamen development, GO:0009555 - pollen development, GO:0005829 - cytosol, GO:0048657 - tapetal cell differentiation, GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000218 - pollen abortion type, TO:0000437 - male sterility, TO:0000455 - seed set percent	PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0009029 - stamen , PO:0025545 - anther wall tapetum cell , PO:0006089 - anther primordium 
22862	UCH4	OsUCH4	UBIQUITIN C-TERMINAL HYDROLASE 4	ubiquitin C-terminal hydrolase 4	UBIQUITIN C-TERMINAL HYDROLASE 4		4		 Biochemical character	Os04g0546400	LOC_Os04g46190.1, LOC_Os04g46190.2				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity		PO:0009029 - stamen 
22863	UCH5	OsUCH5	UBIQUITIN C-TERMINAL HYDROLASE 5	ubiquitin C-terminal hydrolase 5	UBIQUITIN C-TERMINAL HYDROLASE 5		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0667500	LOC_Os04g57190.1, LOC_Os04g57190.2, LOC_Os04g57190.3, LOC_Os04g57190.4				GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0006001 - salt tolerance	PO:0009029 - stamen 
22864	UBP1-1	OsUBP1-1, OsUBP29, UBP29	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-1	ubiquitin-specific processing protease 1-1, Ubiquitin-specific protease 29	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-1		8	OsUBP29 in Ma et al. 2019.	 Biochemical character	Os08g0527100	LOC_Os08g41530.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity		
22865	UBP1-2	OsUBP1-2, OsUBP30, UBP30	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-2	ubiquitin-specific processing protease 1-2, Ubiquitin-specific protease 30	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-2		8	OsUBP30 in Ma et al. 2019.	 Biochemical character	Os08g0527200	LOC_Os08g41540.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity, GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22866	UBP1-3	OsUBP1-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-3	ubiquitin-specific processing protease 1-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-3		8	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os08g0527300	LOC_Os08g41550.1				GO:0016579 - protein deubiquitination, GO:0008270 - zinc ion binding		
22867	UBP1-4	OsUBP1-4, OsUBP2, UBP2	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-4	ubiquitin-specific processing protease 1-4, Ubiquitin-specific protease 2	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-4		8	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP2 in Ma et al. 2019.	 Biochemical character	Os08g0527400	LOC_Os08g41560.1				GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22868	UBP1-6	OsUBP1-6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-6	ubiquitin-specific processing protease 1-6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-6		8	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os08g0527800	LOC_Os08g41610.1				GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		
22869	UBP1-7	OsUBP1-7, OsUBP32, UBP32	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-7	ubiquitin-specific processing protease 1-7, Ubiquitin-specific protease 32	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-7		8	OsUBP32 in Ma et al. 2019.	 Biochemical character	Os08g0527900	LOC_Os08g41620.1				GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity		
22870	LMP1	UBP1-9, OsUBP1-9, OsUBP1, UBP1, OsLMP1, RSR1, OsRSR1, OsUBP2, UBP2	LESION MIMIC PHENOTYPE 1	ubiquitin-specific processing protease 1-9, Ubiquitin-specific protease 1, lesion mimic phenotype 1, rust spots rice 1, Ubiquitin-Specific Protease 2	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-9	lmp1-1, rsr1, Osubp2	9	OsUBP1 in Ma et al. 2019. OsUBP2 in Jiang et al. 2022. closely related to AtUBP2 in Arabidopsis. PRJNA694229. GO:0101005: deubiquitinase activity. GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium. GO:1903427: negative regulation of reactive oxygen species biosynthetic process. PO:0030123: panicle inflorescence. GO:0072593: reactive oxygen species metabolic process.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0505100	LOC_Os09g32740.1				GO:0040029 - regulation of gene expression, epigenetic, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0045454 - cell redox homeostasis, GO:0005737 - cytoplasm, GO:0050777 - negative regulation of immune response, GO:0019430 - removal of superoxide radicals, GO:0042744 - hydrogen peroxide catabolic process, GO:0009658 - chloroplast organization, GO:0016578 - histone deubiquitination, GO:0060548 - negative regulation of cell death, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0031347 - regulation of defense response, GO:0005634 - nucleus, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008270 - zinc ion binding, GO:0016579 - protein deubiquitination	TO:0000293 - chlorophyll-a content, TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content, TO:0000074 - blast disease, TO:0002715 - chloroplast development trait, TO:0000063 - mimic response, TO:0000295 - chlorophyll-b content	PO:0009029 - stamen , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0020105 - ligule , PO:0025034 - leaf 
22871	UBP1-10	OsUBP1-10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-10	ubiquitin-specific processing protease 1-10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-10		9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os11g0619500/Os11g0619601/Os11g0619701	LOC_Os11g40450.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016021 - integral to membrane, GO:0016579 - protein deubiquitination		
22872	UBP2-1	OsUBP2-1, OsUBP18, UBP18	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-1	ubiquitin-specific processing protease 2-1, Ubiquitin-specific protease 18	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-1		2	OsUBP18 in Ma et al. 2019.	 Biochemical character	Os02g0573400	LOC_Os02g36400.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0016021 - integral to membrane, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		PO:0009029 - stamen 
22873	UBP2-2	OsUBP2-2, OsUBP4, UBP4	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-2	ubiquitin-specific processing protease 2-2, Ubiquitin-specific protease 4	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-2		3	OsUBP4 in Ma et al. 2019.	 Biochemical character	Os03g0190800	LOC_Os03g09080.1				GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22874	UBP2-3	OsUBP2-3, OsUBP3, UBP3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-3	ubiquitin-specific processing protease 2-3, Ubiquitin-specific protease 3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-3		4	OsUBP3 in Ma et al. 2019.	 Biochemical character	Os04g0452400	LOC_Os04g37950.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		
22875	UBP3	OsUBP3, OsUBP6, UBP6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 3	ubiquitin-specific processing protease 3, Ubiquitin-specific protease 6	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 3		1	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP6 in Ma et al. 2019.	 Biochemical character	Os01g0550100	LOC_Os01g36930.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		PO:0009029 - stamen 
22876	UBP4-1	OsUBP4-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-1	ubiquitin-specific processing protease 4-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-1		1		 Biochemical character		LOC_Os01g48600.1						PO:0009029 - stamen 
22877	UBP4-2	OsUBP4-2, OsUBP10, UBP10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-2	ubiquitin-specific processing protease 4-2, Ubiquitin-specific protease 10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-2		7	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP10 in Ma et al. 2019.	 Biochemical character	Os07g0160000	LOC_Os07g06610.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination		PO:0009029 - stamen 
22878	UBP4-3	OsUBP4-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-3	ubiquitin-specific processing protease 4-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-3		9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os09g0343900	LOC_Os09g17480.1				GO:0016579 - protein deubiquitination		
22879	UBP4-4	OsUBP4-4, OsUBP9, UBP9	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-4	ubiquitin-specific processing protease 4-4, Ubiquitin-specific protease 9	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-4		10	OsUBP9 in Ma et al. 2019.	 Biochemical character	Os10g0160000	LOC_Os10g07270.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity, GO:0016579 - protein deubiquitination		PO:0009029 - stamen 
22880	FLA	UBP4-5, OsUBP4-5, OsUBP5, UBP5, OsFLA	FLOWER AND LEAF COLOR ABERRANT	ubiquitin-specific processing protease 4-5, flower and leaf color aberrant, Ubiquitin-specific protease 5	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-5	fla	11	OsUBP5 in Ma et al. 2019. TO:0006064: rolled leaf. TO:1000024: palea morphology trait. TO:1000023: lemma morphology trait.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Character as QTL - Yield and productivity	Os11g0473200	LOC_Os11g28360.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016020 - membrane, GO:0009555 - pollen development, GO:0016579 - protein deubiquitination, GO:0048437 - floral organ development, GO:0048439 - flower morphogenesis, GO:0009658 - chloroplast organization, GO:0009908 - flower development, GO:0004843 - ubiquitin-specific protease activity	TO:0002715 - chloroplast development trait, TO:0000734 - grain length, TO:0000622 - flower development trait, TO:0000614 - lemma shape, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000069 - variegated leaf, TO:0000455 - seed set percent, TO:0000072 - awn length, TO:0000209 - palea number	PO:0025034 - leaf , PO:0009038 - palea , PO:0007615 - flower development stage , PO:0025395 - floral organ , PO:0009049 - inflorescence , PO:0025060 - lamina , PO:0001007 - pollen development stage , PO:0009066 - anther 
22881	UBP4-6	OsUBP4-6, OsUBP11, UBP11	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-6	ubiquitin-specific processing protease 4-6, Ubiquitin-specific protease 11	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-6		11	CT835620. GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP11 in Ma et al. 2019.	 Biochemical character	Os11g0473350	LOC_Os11g28365.1				GO:0016579 - protein deubiquitination		
22882	UBP4-7	OsUBP4-7	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-7	ubiquitin-specific processing protease 4-7	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-7		11	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity.	 Biochemical character	Os11g0667400	LOC_Os11g44540.1				GO:0016579 - protein deubiquitination		
22883	UBP4-8	OsUBP4-8, OsUBP8, UBP8	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-8	ubiquitin-specific processing protease 4-8, Ubiquitin-specific protease 8	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-8		12	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP8 in Ma et al. 2019.	 Biochemical character	Os12g0621000	LOC_Os12g42600.1				GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22884	UBP5-3	OsUBP5-3, OsUBP21, UBP21	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 5-3	ubiquitin-specific processing protease 5-3, Ubiquitin-specific protease 21	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 5-3		11	OsUBP21 in Ma et al. 2019.	 Biochemical character	Os11g0573000	LOC_Os11g36470.1				GO:0031647 - regulation of protein stability, GO:0005829 - cytosol, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22885	UBP6	OsUBP6, OsUBP14, UBP14, OsUCH14, UCH14	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 6	ubiquitin-specific processing protease 6, Ubiquitin-specific protease 14	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 6		1	OsUBP14 in Ma et al. 2019. OsUCH14 in Lu et al. 2022.	 Biochemical character	Os01g0177200	LOC_Os01g08200.1				GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0048767 - root hair elongation, GO:0009793 - embryonic development ending in seed dormancy, GO:0008270 - zinc ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016579 - protein deubiquitination, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity		PO:0009029 - stamen 
22886	UBP7-2	OsUBP7-2, OsUBP23, UBP23	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-2	ubiquitin-specific processing protease 7-2, Ubiquitin-specific protease 23	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-2		2	OsUBP23 in Ma et al. 2019.	 Biochemical character	Os02g0795000	LOC_Os02g55180.2, LOC_Os02g55180.1				GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004843 - ubiquitin-specific protease activity		
22887	UBP7-3	OsUBP7-3, OsUBP25, UBP25	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-3	ubiquitin-specific processing protease 7-3, Ubiquitin-specific protease 25	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-3		5	OsUBP25 in Ma et al. 2019.	 Biochemical character	Os05g0510300	LOC_Os05g43480.1				GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004197 - cysteine-type endopeptidase activity		
22888	UBP7-5	OsUBP7-5, OsUBP19, UBP19	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-5	ubiquitin-specific processing protease 7-5, Ubiquitin-specific protease 19	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-5		6	OsUBP19 in Ma et al. 2019.	 Biochemical character	Os06g0654000	LOC_Os06g44380.1				GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0006511 - ubiquitin-dependent protein catabolic process		PO:0009029 - stamen 
22889	UBP7-6	OsUBP7-6, OsUBP17, UBP17	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-6	ubiquitin-specific processing protease 7-6, Ubiquitin-specific protease 17	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-6		8	OsUBP17 in Ma et al. 2019.	 Biochemical character	Os08g0478500	LOC_Os08g37350.1				GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0004197 - cysteine-type endopeptidase activity, GO:0004843 - ubiquitin-specific protease activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		PO:0009029 - stamen 
22890	UBP7-7	OsUBP7-7, OsUBP16, UBP16	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-7	ubiquitin-specific processing protease 7-7, Ubiquitin-specific protease 16	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-7		9	OsUBP16 in Ma et al. 2019.	 Biochemical character	Os09g0464400	LOC_Os09g28940.1				GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0046872 - metal ion binding		
22891	UBP8	OsUBP8, OsUBP20, UBP20	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 8	ubiquitin-specific processing protease 8, Ubiquitin-specific protease 20	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 8		2	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP20 in Ma et al. 2019.	 Biochemical character	Os02g0693400	LOC_Os02g46650.1				GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22892	UBP9-1	OsUBP9-1, OsUBP22, UBP22	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-1	ubiquitin-specific processing protease 9-1, Ubiquitin-specific protease 22	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-1		4	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP22 in Ma et al. 2019.	 Biochemical character	Os04g0647300	LOC_Os04g55360.1				GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22893	UBP9-2	OsUBP9-2, OsUBP34, UBP34	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-2	ubiquitin-specific processing protease 9-2, Ubiquitin-specific protease 34	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-2		9	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP34 in Ma et al. 2019.	 Biochemical character	Os09g0407900	LOC_Os09g24250.1				GO:0008270 - zinc ion binding, GO:0000245 - spliceosome assembly, GO:0016579 - protein deubiquitination		
22894	UBP10	OsUBP10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 10	ubiquitin-specific processing protease 10	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 10		7		 Biochemical character	Os07g0661300	LOC_Os07g46660.1, LOC_Os07g46660.2				GO:0004843 - ubiquitin-specific protease activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0004197 - cysteine-type endopeptidase activity, GO:0016579 - protein deubiquitination		
22895	UBP11	OsUBP11, OsUBP26, UBP26	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 11	ubiquitin-specific processing protease 11, Ubiquitin-specific protease 26	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 11		3	A3AF13. OsUBP26 in Ma et al. 2019.	 Biochemical character	Os03g0192800	LOC_Os03g09260.1				GO:0016579 - protein deubiquitination, GO:0004843 - ubiquitin-specific protease activity, GO:0004197 - cysteine-type endopeptidase activity, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process		
22896	UBP12	OsUBP12, OsUBP27, UBP27	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 12	ubiquitin-specific processing protease 12, Ubiquitin-specific protease 27	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 12		4	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP27 in Ma et al. 2019.	 Biochemical character	Os04g0429200	LOC_Os04g34984.3, LOC_Os04g34984.2, LOC_Os04g34984.1				GO:0016579 - protein deubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
22897	UBP14-1	OsUBP14-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-1	ubiquitin-specific processing protease 14-1	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-1		9		 Biochemical character	Os09g0547900	LOC_Os09g37580.1						
22898	UBP14-2	OsUBP14-2, OsUBP24, UBP24	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-2	ubiquitin-specific processing protease 14-2, Ubiquitin-specific protease 24	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-2		3	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity. OsUBP24 in Ma et al. 2019.	 Biochemical character	Os03g0165600	LOC_Os03g06950.1				GO:0016579 - protein deubiquitination		
22899	UBP14-3	OsUBP14-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-3	ubiquitin-specific processing protease 14-3	UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-3		11		 Biochemical character	Os11g0549605	LOC_Os11g34690.1						
22900	UCH	OsUCH	UBIQUITIN C-TERMINAL HYDROLASE	ubiquitin C-terminal hydrolase	UBIQUITIN C-TERMINAL HYDROLASE		11		 Biochemical character	Os11g0598800	LOC_Os11g38610.2						PO:0009029 - stamen 
22901	_		_	lipin N-terminal conserved region family protein			5	OsCaM1 target gene.		Os05g0462400	LOC_Os05g38710.3, LOC_Os05g38710.2, LOC_Os05g38710.1				GO:0008195 - phosphatidate phosphatase activity		
22902	_		_	DUF1336 domain containing protein			8	OsCaM1 target gene. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). 		Os08g0439100	LOC_Os08g34060.1, LOC_Os08g34060.2, LOC_Os08g34060.3, LOC_Os08g34060.4				GO:0008289 - lipid binding, GO:0005886 - plasma membrane		
22903	_		_				2	OsCaM1 target gene.		Os02g0223700	LOC_Os02g13060.1				GO:0005886 - plasma membrane, GO:0008289 - lipid binding		
22904	CGS1	OsaCGS1, OsCGS1	CYSTATHIONINE GAMMA-SYNTHASE 1	cystathionine gamma-synthase 1	CYSTATHIONINE GAMMA-SYNTHASE 1		10		 Biochemical character	Os10g0399200	LOC_Os10g25950.1				GO:0019346 - transsulfuration, GO:0009086 - methionine biosynthetic process, GO:0003962 - cystathionine gamma-synthase activity, GO:0030170 - pyridoxal phosphate binding, GO:0016829 - lyase activity		
22905	CGS2	OsaCGS2, OsCGS2	CYSTATHIONINE GAMMA-SYNTHASE 2	cystathionine gamma-synthase 2	CYSTATHIONINE GAMMA-SYNTHASE 2		10	one of the candidate genes for qGL10.	 Biochemical character	Os10g0399700	LOC_Os10g26010.1				GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding		
22906	CGS3	OsaCGS3, OsCGS3	CYSTATHIONINE GAMMA-SYNTHASE 3	cystathionine gamma-synthase 3	CYSTATHIONINE GAMMA-SYNTHASE 3		6		 Biochemical character	Os06g0242600	LOC_Os06g13450.1				GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding		PO:0009005 - root , PO:0025034 - leaf 
22907	CGS4	OsaCGS4, OsCGS4	CYSTATHIONINE GAMMA-SYNTHASE 4	cystathionine gamma-synthase 4	CYSTATHIONINE GAMMA-SYNTHASE 4		10		 Biochemical character	Os10g0399100	LOC_Os10g25930.1				GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding		
22908	MMT	OsaMMT, OsMMT	METHIONINE METHYLTRANSFERASE	methionine methyltransferase	METHIONINE METHYLTRANSFERASE		5		 Biochemical character	Os05g0105000	LOC_Os05g01470.1, LOC_Os05g01470.2, LOC_Os05g01470.3				GO:0005829 - cytosol, GO:0001887 - selenium metabolic process, GO:0046500 - S-adenosylmethionine metabolic process, GO:0009058 - biosynthetic process, GO:0030732 - methionine S-methyltransferase activity, GO:0030170 - pyridoxal phosphate binding		
22909	CGS5	OsaCGS5, OsCGS5	CYSTATHIONINE GAMMA-SYNTHASE 5	cystathionine gamma-synthase 5	CYSTATHIONINE GAMMA-SYNTHASE 5		3		 Biochemical character	Os03g0376100	LOC_Os03g25940.4, LOC_Os03g25940.1				GO:0003824 - catalytic activity, GO:0030170 - pyridoxal phosphate binding		PO:0009089 - endosperm 
22910	HMT1	OsaHMT1, OsHMT1	HOMOCYSTEINE METHYLTRANSFERASE 1	homocysteine methyltransferase 1	HOMOCYSTEINE METHYLTRANSFERASE 1		10		 Biochemical character	Os10g0422200	LOC_Os10g28630.2, LOC_Os10g28630.1				GO:0009086 - methionine biosynthetic process, GO:0008270 - zinc ion binding, GO:0008898 - homocysteine S-methyltransferase activity, GO:0047150 - betaine-homocysteine S-methyltransferase activity, GO:0033528 - S-methylmethionine cycle		PO:0009005 - root , PO:0025034 - leaf 
22911	HMT2	OsaHMT2, OsHMT2	HOMOCYSTEINE METHYLTRANSFERASE 2	homocysteine methyltransferase 2	HOMOCYSTEINE METHYLTRANSFERASE 2		1		 Biochemical character	Os01g0772900	LOC_Os01g56610.1				GO:0008270 - zinc ion binding, GO:0008898 - homocysteine S-methyltransferase activity, GO:0047150 - betaine-homocysteine S-methyltransferase activity, GO:0009086 - methionine biosynthetic process, GO:0033528 - S-methylmethionine cycle		PO:0025082 - reproductive shoot system 
22912	HMT3	OsaHMT3, OsHMT3	HOMOCYSTEINE METHYLTRANSFERASE 3	homocysteine methyltransferase 3	HOMOCYSTEINE METHYLTRANSFERASE 3		3		 Biochemical character	Os03g0221200	LOC_Os03g12110.1, LOC_Os03g12110.2				GO:0008898 - homocysteine S-methyltransferase activity, GO:0009086 - methionine biosynthetic process, GO:0033528 - S-methylmethionine cycle		
22913	HMT4	OsaHMT4, OsHMT4	HOMOCYSTEINE METHYLTRANSFERASE 4	homocysteine methyltransferase 4	HOMOCYSTEINE METHYLTRANSFERASE 4		12		 Biochemical character	Os12g0607000	LOC_Os12g41390.3, LOC_Os12g41390.2, LOC_Os12g41390.1				GO:0047150 - betaine-homocysteine S-methyltransferase activity, GO:0033528 - S-methylmethionine cycle, GO:0009086 - methionine biosynthetic process, GO:0008898 - homocysteine S-methyltransferase activity, GO:0008270 - zinc ion binding		PO:0025082 - reproductive shoot system 
22914	SAE1	OsSAE1, OsSAE1.1, OsSAE1.2, OsSAE1.3	SUMO-ACTIVATING ENZYME 1	SUMO-activating enzyme 1, E1 SUMO-activating enzyme 1	SUMO-ACTIVATING ENZYME 1		11		 Biochemical character	Os11g0497000	LOC_Os11g30410.3, LOC_Os11g30410.2, LOC_Os11g30410.1				GO:0031510 - SUMO activating enzyme complex, GO:0009737 - response to abscisic acid stimulus, GO:0019948 - SUMO activating enzyme activity, GO:0009739 - response to gibberellin stimulus, GO:0032446 - protein modification by small protein conjugation, GO:0016925 - protein sumoylation, GO:0005737 - cytoplasm	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
22915	SAE2	OsSAE2, OsSAE2.1, OsSAE2.2, OsSAE2.3	SUMO-ACTIVATING ENZYME 2	SUMO-activating enzyme 2, E1 SUMO-activating enzyme 2, E1 enzyme SAE2	SUMO-ACTIVATING ENZYME 2		11		 Biochemical character	Os07g0586500	LOC_Os07g39780.3, LOC_Os07g39780.2, LOC_Os07g39780.1				GO:0032446 - protein modification by small protein conjugation, GO:0019948 - SUMO activating enzyme activity, GO:0009737 - response to abscisic acid stimulus, GO:0031510 - SUMO activating enzyme complex, GO:0005737 - cytoplasm, GO:0016925 - protein sumoylation	TO:0000615 - abscisic acid sensitivity	
22916	SUMO2	OsSUMO2	SMALL UBIQUITIN LIKE MODIFIER 2	small ubiquitin like modifier 2, small ubiquitin like modifier protein 2, SUMO protein 2	SMALL UBIQUITIN LIKE MODIFIER 2		1	GO:0044389: ubiquitin-like protein ligase binding. OsSUMO1 in Park et al. 2021.	 Tolerance and resistance - Stress tolerance	Os01g0918200             	LOC_Os01g68940.1				GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0016925 - protein sumoylation, GO:0005634 - nucleus, GO:0031386 - protein tag, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009051 - spikelet , PO:0009005 - root , PO:0020103 - flag leaf , PO:0009010 - seed , PO:0025034 - leaf 
22917	HPY2	OsHPY2, OsHPY2.1, OsHPY2.2	HIGH PLOIDY 2	HIGH PLOIDY2	HIGH PLOIDY 2		5	E3 SUMO ligase.	 Biochemical character	Os05g0563500	LOC_Os05g48880.2, LOC_Os05g48880.1				GO:0019789 - SUMO ligase activity, GO:0030915 - Smc5-Smc6 complex, GO:0016021 - integral to membrane, GO:0000724 - double-strand break repair via homologous recombination		PO:0009005 - root 
22918	UO	OsUO	_	uricase, urate oxidase			1		 Biochemical character	Os01g0865100	LOC_Os01g64520.1, LOC_Os01g64520.2				GO:0005777 - peroxisome, GO:0004846 - urate oxidase activity, GO:0006144 - purine base metabolic process, GO:0019628 - urate catabolic process, GO:0007031 - peroxisome organization		
22919	_		_	DUF26 domain protein			1			Os08g0136300	LOC_Os08g04210.1						
22920	MPK9	OsMPK9	MITOGEN-ACTIVATED PROTEIN KINASE 9	mitogen-activated protein kinase 9	MITOGEN-ACTIVATED PROTEIN KINASE 9		5	Q6L5D4. GO:0035556: intracellular signal transduction.	 Tolerance and resistance - Insect resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0582400	LOC_Os05g50560.1				GO:0010468 - regulation of gene expression, GO:0004707 - MAP kinase activity, GO:0009814 - defense response, incompatible interaction, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0002213 - defense response to insect, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000424 - brown planthopper resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000173 - ethylene sensitivity	
22921	_	OsMPK16, MPK16	_	mitogen-activated protein kinase 16			5	Q5VP69. GO:0035556: intracellular signal transduction.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os01g0643800	LOC_Os01g45620.1				GO:0009751 - response to salicylic acid stimulus, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0010468 - regulation of gene expression, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004707 - MAP kinase activity, GO:0002213 - defense response to insect, GO:0009814 - defense response, incompatible interaction, GO:0009723 - response to ethylene stimulus	TO:0000303 - cold tolerance, TO:0000173 - ethylene sensitivity, TO:0000424 - brown planthopper resistance	
22922	ATASE2	Atase2, OsATASE2	AMIDO PHOSPHORIBOSYLTRANSFERASE 2	amido phosphoribosyltransferase 2	AMIDO PHOSPHORIBOSYLTRANSFERASE 2		1		 Biochemical character	Os01g0873200							
22923	GARS	OsGARS	GAR SYNTHETASE	GAR synthetase	GAR SYNTHETASE		5		 Biochemical character	Os05g0270800 	LOC_Os05g18790.1				GO:0004644 - phosphoribosylglycinamide formyltransferase activity, GO:0009507 - chloroplast, GO:0006189 - 'de novo' IMP biosynthetic process		
22924	GART	OsGART	GAR FORMYL TRANSFERASE	GAR formyl transferase	GAR FORMYL TRANSFERASE		8		 Biochemical character	Os08g0500900  	LOC_Os08g39160.1				GO:0009507 - chloroplast, GO:0004644 - phosphoribosylglycinamide formyltransferase activity, GO:0006189 - 'de novo' IMP biosynthetic process		
22925	FGAMS	OsFGAMS	FGAM SYNTHETASE	FGAM synthetase	FGAM SYNTHETASE		1		 Biochemical character	Os01g0888500  	LOC_Os01g66500.1				GO:0006189 - 'de novo' IMP biosynthetic process, GO:0004642 - phosphoribosylformylglycinamidine synthase activity, GO:0005737 - cytoplasm		
22926	AIRS	OsAIRS	AIR SYNTHETASE	AIR synthetase	AIR SYNTHETASE		3		 Biochemical character	Os03g0831500  	LOC_Os03g61600.1				GO:0006164 - purine nucleotide biosynthetic process, GO:0006189 - 'de novo' IMP biosynthetic process, GO:0005829 - cytosol, GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity, GO:0004637 - phosphoribosylamine-glycine ligase activity, GO:0046084 - adenine biosynthetic process		
22927	AIRC	OsAIRC	AIR CARBOXYLASE	AIR carboxylase	AIR CARBOXYLASE		1		 Biochemical character	Os01g0199900  	LOC_Os01g10280.1, LOC_Os01g10280.2, LOC_Os01g10280.3, LOC_Os01g10280.4				GO:0005524 - ATP binding, GO:0009507 - chloroplast, GO:0004638 - phosphoribosylaminoimidazole carboxylase activity, GO:0046872 - metal ion binding, GO:0006189 - 'de novo' IMP biosynthetic process		
22928	ASL	OsASL	ADENYLOSUCCINATE LYASE	adenylosuccinate lyase	ADENYLOSUCCINATE LYASE		3	GO:0044208: 'de novo' AMP biosynthetic process.	 Biochemical character	Os03g0313600  	LOC_Os03g19930.1, LOC_Os03g19930.2, LOC_Os03g19930.3, LOC_Os03g19930.4				GO:0070626 - (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity, GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, GO:0006189 - 'de novo' IMP biosynthetic process		
22929	ATIC	OsATIC	AICAR FORMYL TRANSFERASE	AICAR formyl transferase	AICAR FORMYL TRANSFERASE		8		 Biochemical character	Os08g0206600  	LOC_Os08g10570.2, LOC_Os08g10570.1				GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity, GO:0010319 - stromule, GO:0005829 - cytosol, GO:0006189 - 'de novo' IMP biosynthetic process, GO:0003937 - IMP cyclohydrolase activity, GO:0009570 - chloroplast stroma, GO:0006164 - purine nucleotide biosynthetic process		
22930	ASS1	OsASS1	SAMP SYNTHETASE 1	SAMP synthetase 1	SAMP SYNTHETASE 1		3	Q851S8. GO:0044208: 'de novo' AMP biosynthetic process.	 Biochemical character	Os03g0699300	LOC_Os03g49220.1, LOC_Os03g49220.2				GO:0005737 - cytoplasm, GO:0004019 - adenylosuccinate synthase activity, GO:0005525 - GTP binding, GO:0009507 - chloroplast, GO:0000287 - magnesium ion binding, GO:0046040 - IMP metabolic process		
22931	DIRP1	OsDIRP1	DROUGHT-INDUCED RING PROTEIN 1	Drought-Induced RING Protein 1	DROUGHT-INDUCED RING PROTEIN 1		6		 Tolerance and resistance - Stress tolerance	Os06g0687300	LOC_Os06g47280.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	
22932	ACLA2	SPL30, OsSPL30, OsACL-A2, ACL-A2	ATP-CITRATE LYASE A2	spotted leaf 30, ATP-citrate lyase A2	ATP-CITRATE LYASE A2	spl30-1, spl30-2	12	Q2QNG7.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic	Os12g0566300	LOC_Os12g37870.1				GO:0006952 - defense response, GO:0005829 - cytosol, GO:0031348 - negative regulation of defense response, GO:0009346 - citrate lyase complex, GO:0006633 - fatty acid biosynthetic process, GO:0003878 - ATP citrate synthase activity, GO:0005524 - ATP binding, GO:0006085 - acetyl-CoA biosynthetic process, GO:0060548 - negative regulation of cell death	TO:0000112 - disease resistance, TO:0000063 - mimic response	
22933	EDT1	OsACL-A1, ACL-A1, ACLA1, OsEDT1, ACLA-2, OsACLA-2	EARLIER DEGRADED TAPETUM 1	ATP-citrate lyase A1, Earlier Degraded Tapetum1	ATP-CITRATE LYASE A1	edt1	11	Q2QZ86. ACLA-2 in Bai et al. 2019.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os11g0696200	LOC_Os11g47330.1				GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003878 - ATP citrate synthase activity, GO:0005524 - ATP binding, GO:0006085 - acetyl-CoA biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0009346 - citrate lyase complex, GO:0012501 - programmed cell death	TO:0000218 - pollen abortion type, TO:0000421 - pollen fertility	PO:0009071 - anther wall tapetum , PO:0001032 - E anther wall tapetum degeneration initiated stage 
22934	ACLA3	OsACL-A3, ACL-A3	ATP-CITRATE LYASE A3	ATP-citrate lyase A3	ATP-CITRATE LYASE A3		11	Q53JY8.	 Biochemical character	Os11g0693800	LOC_Os11g47120.1				GO:0006085 - acetyl-CoA biosynthetic process, GO:0005524 - ATP binding, GO:0003878 - ATP citrate synthase activity, GO:0006633 - fatty acid biosynthetic process, GO:0005829 - cytosol, GO:0009346 - citrate lyase complex		
22935	MSL01	OsMSL01, MSL1	MYB/SANT-LIKE 1	Myb/SANT-LIKE 1	MYB/SANT-LIKE 1		1		 Tolerance and resistance - Stress tolerance	Os01g0210200	LOC_Os01g11200.1				GO:0009651 - response to salt stress, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf , PO:0020104 - leaf sheath 
22936	MSL16	OsMSL16	MYB/SANT-LIKE 16	Myb/SANT-LIKE 16	MYB/SANT-LIKE 16		3		 Tolerance and resistance - Stress tolerance	Os03g0643100	LOC_Os03g44130.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009642 - response to light intensity, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009507 - chloroplast	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000460 - light intensity sensitivity, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath 
22937	MSL25	OsMSL25, OsMSL25a, OsMSL25b	MYB/SANT-LIKE 25	Myb/SANT-LIKE 25	MYB/SANT-LIKE 25		5	GO:0044212: transcription regulatory region DNA binding.	 Tolerance and resistance - Stress tolerance	Os05g0560600	LOC_Os05g48690.1, LOC_Os05g48690.2				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22938	MSL27	OsMSL27	MYB/SANT-LIKE 27	Myb/SANT-LIKE 27	MYB/SANT-LIKE 27		7		 Tolerance and resistance - Stress tolerance	Os07g0115800	LOC_Os07g02500.1				GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000460 - light intensity sensitivity, TO:0000276 - drought tolerance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22939	MSL28	OsMSL28	MYB/SANT-LIKE 28	Myb/SANT-LIKE 28	MYB/SANT-LIKE 28		7		 Tolerance and resistance - Stress tolerance	Os07g0210800	LOC_Os07g10950.1				GO:0009737 - response to abscisic acid stimulus, GO:0009642 - response to light intensity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009507 - chloroplast	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000460 - light intensity sensitivity, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath 
22940	MSL33	OsMSL33	MYB/SANT-LIKE 33	Myb/SANT-LIKE 33	MYB/SANT-LIKE 33		9		 Tolerance and resistance - Stress tolerance	Os09g0122200	LOC_Os09g03570.1				GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009642 - response to light intensity	TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22941	MSL34	OsMSL34, OsMSL34a, OsMSL34b	MYB/SANT-LIKE 34	Myb/SANT-LIKE 34	MYB/SANT-LIKE 34		9	GO:0044212: transcription regulatory region DNA binding.	 Tolerance and resistance - Stress tolerance	Os09g0558200	LOC_Os09g38570.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009642 - response to light intensity, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0043565 - sequence-specific DNA binding	TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009047 - stem , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf 
22942	MSL35	OsMSL35	MYB/SANT-LIKE 35	Myb/SANT-LIKE 35	MYB/SANT-LIKE 35		10		 Tolerance and resistance - Stress tolerance	Os10g0468301	LOC_Os10g33030.1				GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009642 - response to light intensity	TO:0000460 - light intensity sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22943	MSL39	OsMSL39	MYB/SANT-LIKE 39	Myb/SANT-LIKE 39	MYB/SANT-LIKE 39		11		 Tolerance and resistance - Stress tolerance	Os11g0599400	LOC_Os11g38660.1				GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0042542 - response to hydrogen peroxide, GO:0009642 - response to light intensity, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
22944	MSL41	OsMSL41	MYB/SANT-LIKE 41	Myb/SANT-LIKE 41	MYB/SANT-LIKE 41		12		 Tolerance and resistance - Stress tolerance	Os12g0207200	LOC_Os12g10550.1				GO:0005634 - nucleus, GO:0009642 - response to light intensity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath 
22945	MSL02	OsMSL02, MSL2	MYB/SANT-LIKE 2	Myb/SANT-LIKE 2	MYB/SANT-LIKE 2		1			Os01g0373400	LOC_Os01g27590.1				GO:0003677 - DNA binding, GO:0005840 - ribosome, GO:0005634 - nucleus		
22946	MSL03	OsMSL03, MSL3	MYB/SANT-LIKE 3	Myb/SANT-LIKE 3	MYB/SANT-LIKE 3		1			Os01g0527900	LOC_Os01g34400.1				GO:0005840 - ribosome, GO:0009507 - chloroplast		PO:0025034 - leaf , PO:0009047 - stem 
22947	MSL04	OsMSL04, MSL4	MYB/SANT-LIKE 4	Myb/SANT-LIKE 4	MYB/SANT-LIKE 4		1			Os01g0549300	LOC_Os01g36850.1				GO:0005840 - ribosome, GO:0005777 - peroxisome, GO:0003677 - DNA binding		PO:0020104 - leaf sheath , PO:0025034 - leaf 
22948	MSL05	OsMSL05, MSL5, DLN18, OsDLN18	MYB/SANT-LIKE 5	Myb/SANT-LIKE 5, DLN repressor 18, DLN motif protein 18	MYB/SANT-LIKE 5		1	GO:0044212: transcription regulatory region DNA binding.		Os01g0674000	LOC_Os01g48320.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		PO:0009047 - stem , PO:0025034 - leaf 
22949	MSL06	OsMSL06, MSL6	MYB/SANT-LIKE 6	Myb/SANT-LIKE 6	MYB/SANT-LIKE 6		1	GO:0044212: transcription regulatory region DNA binding.		Os01g0718900	LOC_Os01g52090.1, LOC_Os01g52090.2				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		PO:0025034 - leaf , PO:0020104 - leaf sheath 
22950	MSL08	OsMSL08, MSL8	MYB/SANT-LIKE 8	Myb/SANT-LIKE 8	MYB/SANT-LIKE 8		2			Os02g0104500	LOC_Os02g01380.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
22951	MSL09	OsMSL09, MSL9	MYB/SANT-LIKE 9	Myb/SANT-LIKE 9	MYB/SANT-LIKE 9		2			Os02g0174300	LOC_Os02g07800.1				GO:0009507 - chloroplast		PO:0020104 - leaf sheath , PO:0025034 - leaf 
22952	MSL10	OsMSL10, MSL10	MYB/SANT-LIKE 10	Myb/SANT-LIKE 10	MYB/SANT-LIKE 10		2			Os02g0181400	LOC_Os02g08450.1				GO:0009507 - chloroplast		PO:0020104 - leaf sheath , PO:0025034 - leaf 
22953	MSL11	OsMSL11	MYB/SANT-LIKE 11	Myb/SANT-LIKE 11	MYB/SANT-LIKE 11		2			Os02g0516800	LOC_Os02g31160.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22954	MSL13	OsMSL13, DLN59, OsDLN59, OsGTgamma-1, GTgamma-1	MYB/SANT-LIKE 13	Myb/SANT-LIKE 13, DLN repressor 59, DLN motif protein 59, GT factor gamma-1	MYB/SANT-LIKE 13		2			Os02g0542400	LOC_Os02g33770.1				GO:0005634 - nucleus		PO:0009047 - stem , PO:0025034 - leaf 
22955	MSL14	OsMSL14	MYB/SANT-LIKE 14	Myb/SANT-LIKE 14	MYB/SANT-LIKE 14		2			Os02g0565000	LOC_Os02g35690.1, LOC_Os02g35690.2				GO:0005634 - nucleus		
22956	MSL15	OsMSL15	MYB/SANT-LIKE 15	Myb/SANT-LIKE 15	MYB/SANT-LIKE 15		2			Os02g0648300	LOC_Os02g43300.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		PO:0009047 - stem , PO:0025034 - leaf 
22957	MSL17	OsMSL17	MYB/SANT-LIKE 17	Myb/SANT-LIKE 17	MYB/SANT-LIKE 17		3			Os03g0666300	LOC_Os03g46350.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		PO:0025034 - leaf , PO:0009047 - stem 
22958	MSL18	OsMSL18	MYB/SANT-LIKE 18	Myb/SANT-LIKE 18	MYB/SANT-LIKE 18		4			Os04g0286500	LOC_Os04g21860.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22959	MSL19	OsMSL19	MYB/SANT-LIKE 19	Myb/SANT-LIKE 19	MYB/SANT-LIKE 19		4			Os04g0377932	LOC_Os04g30890.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		PO:0009005 - root 
22960	MSL20	OsMSL20	MYB/SANT-LIKE 20	Myb/SANT-LIKE 20	MYB/SANT-LIKE 20		4	GO:0044212: transcription regulatory region DNA binding.		Os04g0445600	LOC_Os04g36790.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		PO:0009005 - root 
22961	MSL24	OsMSL24	MYB/SANT-LIKE 24	Myb/SANT-LIKE 24	MYB/SANT-LIKE 24		5			Os05g0128000	LOC_Os05g03740.1				GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
22962	MSL26	OsMSL26	MYB/SANT-LIKE 26	Myb/SANT-LIKE 26	MYB/SANT-LIKE 26		6			Os06g0521000	LOC_Os06g32944.1				GO:0005634 - nucleus, GO:0005840 - ribosome		PO:0009047 - stem , PO:0025034 - leaf 
22963	MSL29	OsMSL29	MYB/SANT-LIKE 29	Myb/SANT-LIKE 29	MYB/SANT-LIKE 29		8			Os08g0178900	LOC_Os08g08130.1				GO:0003677 - DNA binding, GO:0005777 - peroxisome		PO:0009047 - stem , PO:0025034 - leaf 
22964	MSL30	OsMSL30	MYB/SANT-LIKE 30	Myb/SANT-LIKE 30	MYB/SANT-LIKE 30		8			Os08g0225900	LOC_Os08g12950.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0020104 - leaf sheath 
22965	MSL31	OsMSL31	MYB/SANT-LIKE 31	Myb/SANT-LIKE 31	MYB/SANT-LIKE 31		8	GO:0044212: transcription regulatory region DNA binding.		Os08g0484700	LOC_Os08g37810.1				GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding		PO:0009005 - root 
22966	MSL32	OsMSL32	MYB/SANT-LIKE 32	Myb/SANT-LIKE 32	MYB/SANT-LIKE 32		8			Os08g0561000	LOC_Os08g44690.1				GO:0005634 - nucleus, GO:0005840 - ribosome		PO:0009047 - stem , PO:0025034 - leaf 
22967	MSL36	OsMSL36	MYB/SANT-LIKE 36	Myb/SANT-LIKE 36	MYB/SANT-LIKE 36		10	GO:0044212: transcription regulatory region DNA binding.		Os10g0564200	LOC_Os10g41460.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus		PO:0009005 - root 
22968	MSL37	OsMSL37, DLN247, OsDLN247, OsGTgamma-2, GTgamma-2	MYB/SANT-LIKE 37	Myb/SANT-LIKE 37, DLN repressor 247, DLN motif protein 247, GT factor gamma-2	MYB/SANT-LIKE 37		11			Os11g0163500	LOC_Os11g06410.3, LOC_Os11g06410.2, LOC_Os11g06410.1				GO:0005634 - nucleus		PO:0009047 - stem , PO:0025034 - leaf 
22969	MSL38	OsMSL38	MYB/SANT-LIKE 38	Myb/SANT-LIKE 38	MYB/SANT-LIKE 38		11			Os11g0282700	LOC_Os11g17954.1				GO:0005634 - nucleus		PO:0025034 - leaf , PO:0009047 - stem 
22971	MSL40	OsMSL40, DLN253, OsDLN253, OsGTgamma-3, GTgamma-3	MYB/SANT-LIKE 40	Myb/SANT-LIKE 40, DLN repressor 253, DLN motif protein 253, GT factor gamma-3	MYB/SANT-LIKE 40		12			Os12g0163500	LOC_Os12g06640.2, LOC_Os12g06640.1				GO:0005634 - nucleus		PO:0009047 - stem , PO:0025034 - leaf 
22972	SEC1	OsSEC1	SECRET AGENT 1				1	O-linked N-acetylglucosamine (O-GlcNAc) transferase (OGT).		Os01g0915400	LOC_Os01g68680.1						
22973	SEC2	OsSEC2	SECRET AGENT 2				1	O-linked N-acetylglucosamine (O-GlcNAc) transferase (OGT).	 Biochemical character	Os02g0489550	LOC_Os02g28830.1				GO:0006493 - protein amino acid O-linked glycosylation, GO:0016757 - transferase activity, transferring glycosyl groups		
22974	SG1	OsSG1, OsSG1-1, OsSG1-2, OsSG1-3, GSH1, OsGSH1	STAY-GREEN 1	stay-green 1			7	Q6Z3A3.	 Vegetative organ - Leaf,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll	Os07g0462000	LOC_Os07g27790.1				GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0006750 - glutathione biosynthetic process, GO:0004357 - glutamate-cysteine ligase activity	TO:0000495 - chlorophyll content, TO:0000303 - cold tolerance, TO:0000326 - leaf color	
22975	_	PR1	_	Pathogen response gene 1			7			Os07g0125201	LOC_Os07g03319.1				GO:0005615 - extracellular space		
22976	_	OsMYB6, MYB6	_	MYB transcription factor 6			4	MK061534. GO:1902584: positive regulation of response to water deprivation. GO:1901002: positive regulation of response to salt stress.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0676700	LOC_Os04g58020.1				GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0009751 - response to salicylic acid stimulus, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
22977	LPA1-P	OsLpa1-P, Lpa1-P	LOW PHYTIC ACID 1-PARALOG	low phytic acid 1-paralog, OsLpa1 paralog			9	Q651A1.		Os09g0572200	LOC_Os09g39870.1, LOC_Os09g39870.2						
22978	G1L10	OsG1L10	G1 LIKE PROTEIN 10		G1 LIKE PROTEIN 10		1	OsG1L10 gene is expressed at extremely low levels in almost all studied tissues. OsG1L10 might have lost its function (lLi et al. 2019). PO:0030123: panicle inflorescence.		Os01g0745200	LOC_Os01g54180.1						PO:0009049 - inflorescence 
22979	G1L11	OsG1L11	G1 LIKE PROTEIN 11		G1 LIKE PROTEIN 11		5	OsG1L11 gene is expressed at extremely low levels in almost all studied tissues. OsG1L11 might have lost its function (lLi et al. 2019).	 Tolerance and resistance - Stress tolerance	Os05g0337600	LOC_Os05g27120.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
22980	G1L12	OsG1L12	G1 LIKE PROTEIN 12		G1 LIKE PROTEIN 12		8	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0196000	LOC_Os08g09660.1				GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
22981	G1L13	OsG1L13	G1 LIKE PROTEIN 13		G1 LIKE PROTEIN 13		8	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0248000	LOC_Os08g14970.1				GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009299 - mRNA transcription, GO:0005634 - nucleus, GO:0009416 - response to light stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0001083 - inflorescence development stage 
22982	BC1L8	OsBC1L8, PCS12, OsPCS12	BRITTLE CULM-LIKE 8	BRITTLE CULM1-like 8, Phytochelatin synthase 12	PHYTOCHELATIN SYNTHASE 12		7	PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os07g0690900	LOC_Os07g49080.1				GO:0031225 - anchored to membrane, GO:0010215 - cellulose microfibril organization, GO:0016021 - integral to membrane		PO:0025034 - leaf 
22983	BC1L2	OsBC1L2, OsPCS4, PCS4	BRITTLE CULM-LIKE 2	BRITTLE CULM1-like 2, Phytochelatin synthase 4	PHYTOCHELATIN SYNTHASE 4		3	Q75IW1. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os03g0416300	LOC_Os03g30260.1				GO:0031225 - anchored to membrane, GO:0010215 - cellulose microfibril organization, GO:0009832 - plant-type cell wall biogenesis, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009664 - plant-type cell wall organization, GO:0016021 - integral to membrane		PO:0025034 - leaf 
22984	BC1L3	OsBC1L3, OsPCS14, PCS14	BRITTLE CULM-LIKE 3	BRITTLE CULM1-like 3, Phytochelatin synthase 14	PHYTOCHELATIN SYNTHASE 14		3	PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os03g0754500	LOC_Os03g54750.1				GO:0046658 - anchored to plasma membrane, GO:0010215 - cellulose microfibril organization, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009664 - plant-type cell wall organization, GO:0009832 - plant-type cell wall biogenesis		PO:0025034 - leaf 
22985	BC1L4	OsBC1L4, OsPCS7, PCS7	BRITTLE CULM-LIKE 4	BRITTLE CULM1-like 4, Phytochelatin synthase 7	PHYTOCHELATIN SYNTHASE 7		5	Q60E70. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os05g0386800	LOC_Os05g32110.4, LOC_Os05g32110.3, LOC_Os05g32110.2, LOC_Os05g32110.1				GO:0009664 - plant-type cell wall organization, GO:0009832 - plant-type cell wall biogenesis, GO:0046689 - response to mercury ion, GO:0046658 - anchored to plasma membrane, GO:0010215 - cellulose microfibril organization, GO:0010288 - response to lead ion, GO:0052324 - cell wall cellulose biosynthetic process, GO:0016021 - integral to membrane		PO:0025034 - leaf 
22986	BC1L5	OsBC1L5, OsPCS11, PCS11	BRITTLE CULM-LIKE 5	BRITTLE CULM1-like 5, Phytochelatin synthase 11	PHYTOCHELATIN SYNTHASE 11		6		 Vegetative organ - Culm	Os06g0685100	LOC_Os06g47110.1				GO:0031225 - anchored to membrane, GO:0010215 - cellulose microfibril organization, GO:0016021 - integral to membrane		
22987	BC1L6	OsBC1L6, OsPCS8, PCS8	BRITTLE CULM-LIKE 6	BRITTLE CULM1-like 6, Brittle Culm 1-like 6, Phytochelatin synthase 8	PHYTOCHELATIN SYNTHASE 8	Osbc1l6	7	Q6Z4G8. TO:0020068: beta-glucan content.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Seed	Os07g0604300	LOC_Os07g41310.1				GO:0009960 - endosperm development, GO:0046658 - anchored to plasma membrane, GO:0005886 - plasma membrane, GO:0032951 - regulation of beta-glucan biosynthetic process, GO:0009664 - plant-type cell wall organization, GO:0052324 - cell wall cellulose biosynthetic process, GO:0070492 - oligosaccharide binding, GO:0009832 - plant-type cell wall biogenesis, GO:0046686 - response to cadmium ion, GO:0010215 - cellulose microfibril organization, GO:0010043 - response to zinc ion	TO:0000351 - zinc sensitivity	PO:0007633 - endosperm development stage , PO:0009010 - seed 
22988	BC1L7	OsBC1L7, OsPCS6, PCS6	BRITTLE CULM-LIKE 7	BRITTLE CULM1-like 7, Phytochelatin synthase 6	PHYTOCHELATIN SYNTHASE 6		7	Q6Z4G7. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os07g0604400	LOC_Os07g41320.1				GO:0046658 - anchored to plasma membrane, GO:0009832 - plant-type cell wall biogenesis, GO:0009664 - plant-type cell wall organization, GO:0010215 - cellulose microfibril organization, GO:0052324 - cell wall cellulose biosynthetic process		PO:0025034 - leaf 
22989	BC1L9	OsBC1L9, OsPCS2, PCS2	BRITTLE CULM-LIKE 9	BRITTLE CULM1-like 9, Phytochelatin synthase 2	PHYTOCHELATIN SYNTHASE 2		10	Q8W3E8. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os10g0497700	LOC_Os10g35460.1				GO:0009664 - plant-type cell wall organization, GO:0046658 - anchored to plasma membrane, GO:0010215 - cellulose microfibril organization, GO:0009832 - plant-type cell wall biogenesis, GO:0052324 - cell wall cellulose biosynthetic process		PO:0025034 - leaf 
22990	_	OsBC1L2, BC1L2	_	BRITTLE CULM1-like 2			3		 Vegetative organ - Culm	Os03g0416250 	LOC_Os03g30260.1						
22991	PPA6	OsPPa6, PPa6	INORGANIC PYROPHOSPHATASE 6	soluble inorganic pyrophosphatase 6, inorganic pyrophosphatase 6, PPase 6, sPPase 6, pyrophosphorylase 6	INORGANIC PYROPHOSPHATASE 6		2	AtPPa6 homolog. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm	Os02g0768600	LOC_Os02g52940.3, LOC_Os02g52940.2, LOC_Os02g52940.1				GO:0004427 - inorganic diphosphatase activity, GO:0006796 - phosphate metabolic process, GO:0005737 - cytoplasm, GO:0010446 - response to alkalinity, GO:0006970 - response to osmotic stress, GO:0000287 - magnesium ion binding	TO:0000696 - starch content, TO:0002627 - fruit width, TO:0000396 - grain yield, TO:0000180 - spikelet fertility, TO:0000442 - plant fresh weight, TO:0000143 - relative biomass, TO:0000207 - plant height, TO:0002673 - amino acid content, TO:0000095 - osmotic response sensitivity, TO:0000525 - sodium to potassium content ratio, TO:0000333 - sugar content, TO:0006002 - proline content, TO:0000328 - sucrose content, TO:0000495 - chlorophyll content, TO:0001027 - net photosynthetic rate, TO:0000481 - alkali sensitivity	
22992	_		_	sPPase, Soluble Inorganic Pyrophosphatase			1		 Biochemical character	Os01g0974800	LOC_Os01g74350.1				GO:0004427 - inorganic diphosphatase activity, GO:0005829 - cytosol, GO:0006796 - phosphate metabolic process, GO:0000287 - magnesium ion binding		
22993	_		_	sPPase, Soluble Inorganic Pyrophosphatase			1		 Biochemical character	Os01g0866500	LOC_Os01g64670.1, LOC_Os01g64670.2, LOC_Os01g64670.3				GO:0006796 - phosphate metabolic process, GO:0005829 - cytosol, GO:0004427 - inorganic diphosphatase activity, GO:0000287 - magnesium ion binding		
22994	_		_	sPPase, Soluble Inorganic Pyrophosphatase			2	Q0DYB1.	 Biochemical character	Os02g0704900	LOC_Os02g47600.1, LOC_Os02g47600.2				GO:0000287 - magnesium ion binding, GO:0006796 - phosphate metabolic process, GO:0004427 - inorganic diphosphatase activity, GO:0005829 - cytosol		
22995	_		_	sPPase, Soluble Inorganic Pyrophosphatase			5		 Biochemical character	Os05g0114000	LOC_Os05g02310.1				GO:0005829 - cytosol, GO:0004427 - inorganic diphosphatase activity, GO:0000287 - magnesium ion binding, GO:0006796 - phosphate metabolic process		
22996	_		_	sPPase, Soluble Inorganic Pyrophosphatase			5		 Biochemical character	Os05g0438500	LOC_Os05g36260.1				GO:0006796 - phosphate metabolic process, GO:0000287 - magnesium ion binding, GO:0004427 - inorganic diphosphatase activity, GO:0005829 - cytosol		
22997	GS1 	OsGS1, OsGS2, OsGSH2	GLUTATHIONE SYNTHETASE 1	glutathione synthetase 1	GLUTATHIONE SYNTHETASE 1		11	OsGS2 in Fang et al. 2021. OsGSH2 in Mostofa et al. 2021.	 Tolerance and resistance - Stress tolerance	Os11g0642800	LOC_Os11g42350.1, LOC_Os11g42350.2, LOC_Os11g42350.3				GO:0005829 - cytosol, GO:0004363 - glutathione synthase activity, GO:0000287 - magnesium ion binding, GO:0042803 - protein homodimerization activity, GO:0046685 - response to arsenic, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0043295 - glutathione binding	TO:0000303 - cold tolerance	PO:0009006 - shoot system 
22998	GS3	OsGS3	GLUTATHIONE SYNTHETASE 3	glutathione synthetase 3	GLUTATHIONE SYNTHETASE 3		12			Os12g0528400	LOC_Os12g34380.1				GO:0043295 - glutathione binding, GO:0004363 - glutathione synthase activity, GO:0005829 - cytosol, GO:0005524 - ATP binding		PO:0009006 - shoot system 
22999	GS2	OsGS2, OsGS	GLUTATHIONE SYNTHETASE 2	glutathione synthetase 2, hydroxymethyl-glutathione synthetase	GLUTATHIONE SYNTHETASE 2		12	EU267952. AY453405. OsGS in Park et al. 2021.	 Biochemical character,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os12g0263000	LOC_Os12g16200.1				GO:0048527 - lateral root development, GO:0005524 - ATP binding, GO:0043295 - glutathione binding, GO:0004363 - glutathione synthase activity, GO:0000287 - magnesium ion binding, GO:0042803 - protein homodimerization activity, GO:0045454 - cell redox homeostasis, GO:0009409 - response to cold	TO:0000396 - grain yield, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0000656 - root development trait, TO:0000605 - hydrogen peroxide content, TO:0000303 - cold tolerance, TO:0000279 - root weight	PO:0009006 - shoot system , PO:0007520 - root development stage 
23000	LC5	OsLC5, OsTTA, TTA	LOW CADMIUM 5	OsTITANIA, TITANIA			3	Q10PC5. an ortholog of the transcriptional regulator Arabidopsis thaliana TITANIA (TTA). a putative Arabidopsis thaliana TITANIA1 (TTA1) and TTA2 ortholog. TO:0020092: copper content trait. TO:0020090: zinc content trait. TO:0020091: manganese content.	 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Vegetative organ - Culm	Os03g0239200	LOC_Os03g13590.1				GO:0010468 - regulation of gene expression, GO:0040008 - regulation of growth, GO:0046872 - metal ion binding, GO:0001708 - cell fate specification, GO:0009880 - embryonic pattern specification, GO:0010071 - root meristem specification, GO:0010078 - maintenance of root meristem identity, GO:0005634 - nucleus, GO:0010492 - maintenance of shoot apical meristem identity, GO:0055065 - metal ion homeostasis	TO:0000207 - plant height, TO:0000346 - tiller number	PO:0000003 - whole plant 
23001	CNX6	OsCNX6	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 6	cofactor for nitrate reductase and xanthine dehydrogenase 6	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 6	cnx6, cnx6-06, cnx6-11	2	Q6Z2X3. TO:0020084: spiral leaf.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Biochemical character,  Seed - Physiological traits - Dormancy	Os02g0140300	LOC_Os02g04740.1				GO:0009845 - seed germination, GO:0019008 - molybdopterin synthase complex, GO:0005829 - cytosol, GO:0032324 - molybdopterin cofactor biosynthetic process, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0030366 - Mo-molybdopterin synthase activity, GO:0009688 - abscisic acid biosynthetic process, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0048623 - seed germination on parent plant	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0002661 - seed maturation, TO:0000492 - leaf shape, TO:0000370 - leaf width, TO:0000253 - seed dormancy	PO:0009010 - seed , PO:0007057 - 0 seed germination stage , PO:0007632 - seed maturation stage 
23002	CNX1	OsCNX1	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1	cofactor for nitrate reductase and xanthine dehydrogenase 1	CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1		4	TO:0020084: spiral leaf. GO:0061598: molybdopterin adenylyltransferase activity. GO:0061599: molybdopterin molybdotransferase activity.	 Seed - Physiological traits - Dormancy,  Biochemical character,  Vegetative organ - Leaf	Os04g0661600	LOC_Os04g56620.2, LOC_Os04g56620.1				GO:0005829 - cytosol, GO:0009688 - abscisic acid biosynthetic process, GO:0009845 - seed germination, GO:0048623 - seed germination on parent plant, GO:0032324 - molybdopterin cofactor biosynthetic process, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0030366 - Mo-molybdopterin synthase activity, GO:0005524 - ATP binding, GO:0030151 - molybdenum ion binding, GO:0008940 - nitrate reductase activity, GO:0009734 - auxin mediated signaling pathway, GO:0010038 - response to metal ion	TO:0000370 - leaf width, TO:0000253 - seed dormancy, TO:0000492 - leaf shape, TO:0002661 - seed maturation	
23003	BIG	OsBIG	_			Osbig	9	MH464384. B9G2A8. A putative homolog of AtBIG.		Os09g0247700	LOC_Os09g07294.1				GO:0008219 - cell death, GO:0008270 - zinc ion binding, GO:0009926 - auxin polar transport, GO:0009506 - plasmodesma, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0009734 - auxin mediated signaling pathway, GO:0010109 - regulation of photosynthesis, GO:0005829 - cytosol, GO:0009826 - unidimensional cell growth, GO:0007275 - multicellular organismal development, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0046466 - membrane lipid catabolic process	TO:0000298 - chlorophyll ratio, TO:0000084 - root number, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000357 - growth and development trait	
23004	HOP2	OsHOP2	HOMOLOGOUS PAIRING PROTEIN2		HOMOLOGOUS PAIRING PROTEIN2	Oshop2, Oshop2-1, Oshop2-2, Oshop2-3, Oshop2-4	3	GO:0140013: meiotic nuclear division. GO:0035825: homologous recombination.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os03g0710100	LOC_Os03g50220.1				GO:0006302 - double-strand break repair, GO:0004672 - protein kinase activity, GO:0051321 - meiotic cell cycle, GO:0070193 - synaptonemal complex organization, GO:0000785 - chromatin, GO:0007129 - synapsis, GO:0007131 - reciprocal meiotic recombination, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006468 - protein amino acid phosphorylation		
23005	SHOC1	OsSHOC1	SHORTAGE IN CHIASMATA 1	Shortage in chiasmata 1		Osshoc1, osshoc1-2	2	yeast ZIP2 ortholog. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os02g0642600	LOC_Os02g42910.1				GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0007131 - reciprocal meiotic recombination	TO:0000485 - sterility related trait	
23006	PTD1	OsPTD1	PARTING DANCER 1	Parting Dancer 1		Osptd1, osptd-1	5	yeast SPO16 ortholog. GO:0140013: meiotic nuclear division.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os05g0588200	LOC_Os05g51060.1				GO:0009555 - pollen development, GO:0048236 - plant-type spore development, GO:0000712 - resolution of meiotic joint molecules as recombinants, GO:0010845 - positive regulation of reciprocal meiotic recombination, GO:0007140 - male meiosis	TO:0000485 - sterility related trait	
23007	TPR1	OsTPR1	TETRATRICOPEPTIDE REPEAT PROTEIN 1	tetratricopeptide repeat protein 1	TETRATRICOPEPTIDE REPEAT PROTEIN 1		10	AK063937.	 Tolerance and resistance - Disease resistance	Os10g0486900	LOC_Os10g34540.1				GO:0050832 - defense response to fungus, GO:0051879 - Hsp90 protein binding, GO:0010200 - response to chitin	TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content	
23008	VAMP724	OsVAMP724	VESICLE-ASSOCIATED MEMBRANE PROTEIN 724	vesicle-associated membrane protein 724	VESICLE-ASSOCIATED MEMBRANE PROTEIN 724		7			Os07g0249200 	LOC_Os07g14540.1				GO:0005484 - SNAP receptor activity, GO:0031201 - SNARE complex, GO:0016021 - integral to membrane, GO:0006906 - vesicle fusion, GO:0006887 - exocytosis, GO:0000149 - SNARE binding		
23009	SYP132	OsSYP132, OsSYP131a, SYP131a	SYNTAXIN OF PLANTS 132	Syntaxin of Plants132	SYNTAXIN OF PLANTS 132	Ossyp131a, Ossyp131a-1, Ossyp131a-2	7	OsSYP131a in Liu et al. 2022.	 Vegetative organ - Culm,  Reproductive organ - Pollination, fertilization, fertility	Os07g0164300	LOC_Os07g07000.1				GO:0006886 - intracellular protein transport, GO:0012505 - endomembrane system, GO:0006906 - vesicle fusion, GO:0048278 - vesicle docking, GO:0006887 - exocytosis, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0031201 - SNARE complex	TO:0000484 - seed shape, TO:0000207 - plant height, TO:0000639 - seed fertility	PO:0009046 - flower , PO:0020104 - leaf sheath , PO:0025034 - leaf 
23010	SYP124	OsSYP124	SYNTAXIN OF PLANTS 124	Syntaxin of Plants124	SYNTAXIN OF PLANTS 124		6		 Biochemical character	Os06g0590500	LOC_Os06g39050.1				GO:0005484 - SNAP receptor activity, GO:0031201 - SNARE complex, GO:0012505 - endomembrane system, GO:0006906 - vesicle fusion, GO:0016021 - integral to membrane, GO:0006887 - exocytosis, GO:0000149 - SNARE binding, GO:0048278 - vesicle docking, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane		
23011	SYP125	OsSYP125	SYNTAXIN OF PLANTS 125	Syntaxin of Plants125	SYNTAXIN OF PLANTS 125		2		 Biochemical character	Os02g0209900	LOC_Os02g11890.1				GO:0005886 - plasma membrane, GO:0012505 - endomembrane system, GO:0006886 - intracellular protein transport, GO:0031201 - SNARE complex, GO:0006906 - vesicle fusion, GO:0048278 - vesicle docking, GO:0016021 - integral to membrane, GO:0006887 - exocytosis, GO:0000149 - SNARE binding, GO:0005484 - SNAP receptor activity		
23012	SYP131	OsSYP131, OsSYP131b, SYP131b	SYNTAXIN OF PLANTS 131	Syntaxin of Plants131	SYNTAXIN OF PLANTS 131	Ossyp131b, Ossyp131b-1, Ossyp131b-2	6	OsSYP131b  in Liu et al. 2022. In the Ossyp131b Ossyp132 double mutants, the colonization rate and arbuscule abundance level decreased markedly. AM symbiosis is in fact controlled by the combined action of both SYP13I and SYP13II clades ( Liu et al. 2022). GO:0036377: arbuscular mycorrhizal association.	 Biochemical character	Os06g0168500	LOC_Os06g07200.1				GO:0012505 - endomembrane system, GO:0016021 - integral to membrane, GO:0006886 - intracellular protein transport, GO:0005886 - plasma membrane, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0006887 - exocytosis, GO:0048278 - vesicle docking, GO:0006906 - vesicle fusion, GO:0031201 - SNARE complex		PO:0009005 - root , PO:0025034 - leaf 
23013	VPE2	OsVPE2	VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 2	vacuolar Pi efflux transporter 2, vacuolar phosphate efflux transporter 2	VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 2	Osvpe2, Osvpe2-1, Osvpe2-2	8	TO:0020102: phosphate content. a vacuolar GlpT protein.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0156600	LOC_Os08g06010.1				GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane, GO:0042594 - response to starvation, GO:0006817 - phosphate transport, GO:0016020 - membrane, GO:0055062 - phosphate ion homeostasis		
23014	GLPT1	OsGlpT1, GlpT1	GLYCEROL-3-PHOSPHATE TRANSPORTER 1	GlpT protein 1, Glycerol-3-phosphate transporter 1, G3P transporter 1	GLYCEROL-3-PHOSPHATE TRANSPORTER 1		2		 Biochemical character	Os02g0652800	LOC_Os02g43620.1				GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane, GO:0055062 - phosphate ion homeostasis, GO:0022857 - transmembrane transporter activity		
23015	GLPT2	OsGlpT2, GlpT2	GLYCEROL-3-PHOSPHATE TRANSPORTER 2	GlpT protein 2, Glycerol-3-phosphate transporter 2, G3P transporter 2	GLYCEROL-3-PHOSPHATE TRANSPORTER 2		6		 Biochemical character	Os06g0179900	LOC_Os06g08170.1				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0055062 - phosphate ion homeostasis		
23016	_	AGP, OsAGP	_	Arabinogalactan protein			3	PO:0030123: panicle inflorescence.		Os03g0245300	LOC_Os03g14140.1						
23017	EPAD1	AGP, OsAGP, OsEPAD1	EXINE PATTERN DESIGNER 1	Arabinogalactan protein, exine pattern designer 1		epad1	3	PO:0030123: panicle inflorescence. TO:1000022: anther morphology trait. GO:0120013: lipid transfer activity.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0663900	LOC_Os03g46110.1				GO:0048658 - tapetal layer development, GO:0005886 - plasma membrane, GO:0005543 - phospholipid binding, GO:0010584 - pollen exine formation, GO:0048653 - anther development	TO:0000531 - anther length, TO:0000053 - pollen sterility, TO:0000187 - anther color, TO:0000437 - male sterility	PO:0006204 - sporocyte , PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0020048 - microspore 
23018	_	AGP, OsAGP	_	Arabinogalactan protein			4	PO:0030123: panicle inflorescence.		Os04g0668300	LOC_Os04g57270.1						
23019	_	AGP, OsAGP	_	Arabinogalactan protein			10	PO:0030123: panicle inflorescence.		Os10g0148700	LOC_Os10g05790.1						PO:0009073 - stigma 
23020	_	AGP, OsAGP	_	Arabinogalactan protein			5	PO:0030123: panicle inflorescence.		Os05g0597700	LOC_Os05g51900.1						PO:0009066 - anther 
23021	PMEI27	AGP, OsAGP, OsPMEI27	PECTIN METHYLESTERASES INHIBITOR 24	Arabinogalactan protein, pectin methylesterases inhibitor 24	PECTIN METHYLESTERASES INHIBITOR 24		7	PO:0030123: panicle inflorescence.		Os07g0247000	LOC_Os07g14340.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
23023	_	AGP, OsAGP	_	Arabinogalactan protein			2	PO:0030123: panicle inflorescence.		Os02g0101900	LOC_Os02g01190.1, LOC_Os02g01190.2						PO:0009010 - seed 
23024	_	AGP, OsAGP	_	Arabinogalactan protein			4	PO:0030123: panicle inflorescence.		Os04g0498700	LOC_Os04g42100.1				GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0009505 - plant-type cell wall, GO:0009506 - plasmodesma, GO:0020037 - heme binding, GO:0006979 - response to oxidative stress, GO:0042744 - hydrogen peroxide catabolic process		PO:0009010 - seed 
23025	_	AGP, OsAGP	_	Arabinogalactan protein			7	CT836117. 		Os07g0537300	LOC_Os07g35290.1				GO:0016021 - integral to membrane		PO:0009047 - stem , PO:0009005 - root , PO:0009010 - seed 
23026	CBMIP-K	AGP, OsAGP, OsCBMIP-K	CBM1-INTERACTING PROTEIN-K	Arabinogalactan protein, CBM1-interacting protein-K	CBM1-INTERACTING PROTEIN-K		7			Os07g0540100	LOC_Os07g35580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0002238 - response to molecule of fungal origin, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		PO:0025034 - leaf , PO:0009010 - seed , PO:0009047 - stem 
23027	_	AGP, OsAGP	_	Arabinogalactan protein			9	AK371492.		Os09g0364400	LOC_Os09g19970.1				GO:0016021 - integral to membrane		PO:0025034 - leaf , PO:0009010 - seed , PO:0009005 - root 
23028	OSD1	OsOSD1	OMISSION OF SECOND DIVISION 1			Ososd1	2	MiMe (Mitosis instead of Meiosis) mutants was generated by editing the OsOSD1 (Os02g37850), PAIR1 (Os03g01590), and OsREC8 (Os05g50410) genes. GO:1904667: negative regulation of ubiquitin protein ligase activity.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os02g0591500	LOC_Os02g37850.2, LOC_Os02g37850.1				GO:0007135 - meiosis II, GO:0019954 - asexual reproduction, GO:0005634 - nucleus, GO:0051783 - regulation of nuclear division		
23029	_		_	galactose oxidase/HUP6-like gene			8			Os08g0128000	LOC_Os08g03420.1, LOC_Os08g03420.2, LOC_Os08g03420.3, LOC_Os08g03420.4						
23030	_		_	Dreg-2 like protein/haloacid dehalogenase-like hydrolase domain-containing protein 3			2			Os02g0173600	LOC_Os02g07730.1						
23031	HIR3	OsHIR3	HYPERSENSITIVE INDUCED REACTION 3	hypersensitive induced reaction 3			6		 Tolerance and resistance - Disease resistance	Os06g0136000	LOC_Os06g04460.1				GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009626 - plant-type hypersensitive response	TO:0000175 - bacterial blight disease resistance, TO:0000148 - viral disease resistance	
23032	_	PR5	_	pathogenesis-related gene 5			5			Os05g0538500	LOC_Os05g46110.1				GO:0006952 - defense response, GO:0005576 - extracellular region, GO:0016021 - integral to membrane		
23033	SPL35	OsSPL35	SPOTTED LEAF 35	spotted leaf 35		spl35	3	a CUE (coupling of ubiquitin conjugation to ER degradation) domain-containing protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os03g0205000	LOC_Os03g10750.1				GO:0042542 - response to hydrogen peroxide, GO:0043130 - ubiquitin binding, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0010547 - thylakoid membrane disassembly, GO:0006952 - defense response, GO:0009658 - chloroplast organization, GO:0005829 - cytosol, GO:0005783 - endoplasmic reticulum, GO:0010941 - regulation of cell death, GO:0031347 - regulation of defense response, GO:0042742 - defense response to bacterium	TO:0000095 - osmotic response sensitivity, TO:0000063 - mimic response, TO:0000495 - chlorophyll content, TO:0000496 - carotenoid content, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0002715 - chloroplast development trait, TO:0000316 - photosynthetic ability, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf , PO:0009049 - inflorescence 
23034	DELTA-COP1 	Delta-COP1	COATOMER SUBUNIT DELTA PROTEIN 1	coatomer subunit delta protein 1	COATOMER SUBUNIT DELTA PROTEIN 1		5	Q0DJA0.	 Tolerance and resistance - Lesion mimic	Os05g0310800					GO:0015031 - protein transport, GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0051645 - Golgi localization, GO:0000139 - Golgi membrane, GO:0005829 - cytosol, GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER, GO:0030137 - COPI-coated vesicle, GO:0030126 - COPI vesicle coat	TO:0000063 - mimic response	
23035	DELTA-COP2	Delta-COP2	COATOMER SUBUNIT DELTA PROTEIN 2	coatomer subunit delta protein 2	COATOMER SUBUNIT DELTA PROTEIN 2		5	Q0DJ99.	 Tolerance and resistance - Lesion mimic	Os05g0311000	LOC_Os05g24601.3, LOC_Os05g24601.2, LOC_Os05g24601.1				GO:0006888 - ER to Golgi vesicle-mediated transport, GO:0051645 - Golgi localization, GO:0000139 - Golgi membrane, GO:0015031 - protein transport, GO:0030137 - COPI-coated vesicle, GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER, GO:0030126 - COPI vesicle coat, GO:0005829 - cytosol	TO:0000063 - mimic response	
23036	HAN1	OsHAN1, OsCYP94B4, CYP94B4	CHILLING 1	Cytochrome P450 94B4, CHILLING TOLERANCE 1	CYTOCHROME P450 94B4	HAN102428, HAN1Teqing, han1deltaMYB, OsHAN1-CAS4, OsHAN1-CAS15	11	"CT835686. rice ortholog of AtCYP94B3. \"han\" termed \"chilling\" in Chinese (Mao et al. 2019). GO:2000022: regulation of jasmonic acid mediated signaling pathway. TO:0000993: cellulose content."	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0483000	LOC_Os11g29290.1				GO:0009611 - response to wounding, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005783 - endoplasmic reticulum, GO:0052541 - plant-type cell wall cellulose metabolic process, GO:0007623 - circadian rhythm, GO:0009828 - plant-type cell wall loosening, GO:0005506 - iron ion binding, GO:0009409 - response to cold	TO:0002668 - jasmonic acid content, TO:0006009 - lodicule anatomy and morphology trait, TO:0000303 - cold tolerance, TO:0000447 - filled grain number, TO:0000340 - total soluble sugar content, TO:0002616 - flowering time	PO:0009036 - lodicule , PO:0001077 - lodicule differentiation and expansion stage , PO:0000003 - whole plant , PO:0007616 - flowering stage 
23037	_		_	Subtilisin/chymotrypsin inhibitor			12		 Biochemical character	Os12g0548700	LOC_Os12g36240.1				GO:0009611 - response to wounding, GO:0004867 - serine-type endopeptidase inhibitor activity		
23038	HIPP27	OsHIPP27, OsaHIP27, HIP27	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 27	heavy-metal-associated isoprenylated plant protein 27	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 27		3	Similar to Barley stem rust resistance protein.	 Biochemical character	Os03g0126700	LOC_Os03g03500.1				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding		
23039	_		_	lipid transfer protein			10		 Biochemical character	Os10g0169200	LOC_Os10g08780.1						
23040	HYPRP33	OsHyPRP33, HyPRP33	HYBRID PROLINE-RICH PROTEIN 33	plant lipid transfer protein, Hybrid Proline-Rich Protein 33	HYBRID PROLINE-RICH PROTEIN 33		10		 Biochemical character	Os10g0551700	LOC_Os10g40420.1				GO:0008233 - peptidase activity		
23041	_		_	thaumatin-like protein			10	Similar to Thaumatin-like protein.	 Biochemical character	Os10g0146200	LOC_Os10g05600.1				GO:0006952 - defense response, GO:0005576 - extracellular region		
23042	_		_				7	Similar to PR1a protein.	 Biochemical character	Os07g0128800	LOC_Os07g03690.1				GO:0005615 - extracellular space		
23043	_		_				3		 Other	Os03g0815900	LOC_Os03g60130.1, LOC_Os03g60130.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0003746 - translation elongation factor activity, GO:0006351 - transcription, DNA-dependent, GO:0005634 - nucleus		PO:0005052 - plant callus 
23044	VAMP727	OsVAMP727	VESICLE-ASSOCIATED MEMBRANE PROTEIN 727	vesicle-associated membrane protein 727	VESICLE-ASSOCIATED MEMBRANE PROTEIN 727		8			Os08g0558600 	LOC_Os08g44430.1, LOC_Os08g44430.2				GO:0000149 - SNARE binding, GO:0006887 - exocytosis, GO:0016021 - integral to membrane, GO:0005484 - SNAP receptor activity, GO:0007033 - vacuole organization, GO:0006906 - vesicle fusion, GO:0031201 - SNARE complex, GO:0006623 - protein targeting to vacuole, GO:0033263 - CORVET complex		
23045	VAMP722	OsVAMP722	VESICLE-ASSOCIATED MEMBRANE PROTEIN 722	vesicle-associated membrane protein 722	VESICLE-ASSOCIATED MEMBRANE PROTEIN 722		7			Os07g0194000 	LOC_Os07g09600.1				GO:0006906 - vesicle fusion, GO:0031201 - SNARE complex, GO:0005484 - SNAP receptor activity, GO:0000149 - SNARE binding, GO:0006887 - exocytosis, GO:0016021 - integral to membrane		
23046	VAMP721	OsVAMP721	VESICLE-ASSOCIATED MEMBRANE PROTEIN 721	vesicle-associated membrane protein 721	VESICLE-ASSOCIATED MEMBRANE PROTEIN 721		3			Os03g0803000 	LOC_Os03g58840.1				GO:0016021 - integral to membrane, GO:0000149 - SNARE binding, GO:0006906 - vesicle fusion, GO:0006887 - exocytosis, GO:0031201 - SNARE complex, GO:0005484 - SNAP receptor activity		
23047	_		_	circumsporozoite protein precursor			1			Os01g0537250	LOC_Os01g35330.1, LOC_Os01g35330.2						
23048	FAR8	OsFAR8	FATTY ACYL-COA REDUCTASE 8	Male sterility protein, Fatty acyl-CoA reductase 8	FATTY ACYL-COA REDUCTASE 8		8	Male sterility protein in Pan et al. 2020. PO:0030123: panicle inflorescence. GO:0102965: alcohol-forming fatty acyl-CoA reductase activity. GO:0035336: long-chain fatty-acyl-CoA metabolic process. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0298700	LOC_Os08g20200.1, LOC_Os08g20200.2				GO:0006629 - lipid metabolic process, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0009737 - response to abscisic acid stimulus, GO:0010345 - suberin biosynthetic process	TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000621 - inflorescence development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
23049	_		_				4			Os04g0677600	LOC_Os04g58120.1						
23050	_		_				4			Os04g0528200	LOC_Os04g44600.1						
23051	_		_				3			Os03g0244000	LOC_Os03g14040.1, LOC_Os03g14040.2, LOC_Os03g14040.3				GO:0016021 - integral to membrane		
23052	_		_				3			Os03g0270200	LOC_Os03g16369.1, LOC_Os03g16369.2				GO:0006397 - mRNA processing		
23053	_		_				6			Os06g0103800	LOC_Os06g01440.1				GO:0010168 - ER body, GO:0016021 - integral to membrane, GO:0005381 - iron ion transmembrane transporter activity, GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0005384 - manganese ion transmembrane transporter activity, GO:0030026 - cellular manganese ion homeostasis, GO:0006880 - intracellular sequestering of iron ion		
23054	_		_				7			Os07g0406600	LOC_Os07g22390.1, LOC_Os07g22390.2				GO:0016021 - integral to membrane, GO:0004620 - phospholipase activity		
23055	_		_				5			Os05g0367200	LOC_Os05g30430.1, LOC_Os05g30430.2				GO:0016021 - integral to membrane		
23056	_		_	sterol glucosyltransferase			2		 Biochemical character	Os02g0210800	LOC_Os02g11940.1, LOC_Os02g11940.2				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0008194 - UDP-glycosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity		
23057	_		_				2	related to starch and sucrose metabolism (Wang et al. 2019).		Os02g0791450							
23058	_		_				7	related to starch and sucrose metabolism (Wang et al. 2019).		Os07g0551650							
23059	GRF7	OsGRF7	GROWTH-REGULATING FACTOR 7	growth-regulating factor7	GROWTH-REGULATING FACTOR 7		12	BK004862. Q6AWY2. GO:1900150: regulation of defense response to fungus. GO:0090511: periclinal cell division. GO:1901601: strigolactone biosynthetic process.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance,  Biochemical character,  Character as QTL - Germination,  Seed - Physiological traits - Dormancy	Os12g0484900	LOC_Os12g29980.2, LOC_Os12g29980.1				GO:0005524 - ATP binding, GO:0009739 - response to gibberellin stimulus, GO:0009845 - seed germination, GO:0051511 - negative regulation of unidimensional cell growth, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0006351 - transcription, DNA-dependent, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0009683 - indoleacetic acid metabolic process, GO:0009685 - gibberellin metabolic process, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0016563 - transcription activator activity	TO:0000163 - auxin sensitivity, TO:0000476 - growth hormone content, TO:0000207 - plant height, TO:0000206 - leaf angle, TO:0002675 - gibberellic acid content, TO:0002672 - auxin content, TO:0000074 - blast disease, TO:0000401 - plant growth hormone sensitivity, TO:0000259 - heat tolerance, TO:0000396 - grain yield, TO:0000166 - gibberellic acid sensitivity, TO:0000357 - growth and development trait, TO:0000329 - tillering ability, TO:0000346 - tiller number	PO:0009009 - plant embryo , PO:0007057 - 0 seed germination stage , PO:0020142 - stem internode , PO:0004709 - axillary bud , PO:0009049 - inflorescence , PO:0005004 - shoot node 
23060	SPL34	OsSPL34	SPOTTED LEAF 34	spotted leaf 34		spl34	4	GO:0070481: nuclear-transcribed mRNA catabolic process, non-stop decay. GO:0070966: nuclear-transcribed mRNA catabolic process, no-go decay.	 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Stress tolerance	Os04g0659900	LOC_Os04g56480.1, LOC_Os04g56480.2, LOC_Os04g56480.3				GO:0012501 - programmed cell death, GO:0004519 - endonuclease activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0009416 - response to light stimulus, GO:0043022 - ribosome binding, GO:0070651 - nonfunctional rRNA decay, GO:0071025 - RNA surveillance, GO:0032790 - ribosome disassembly, GO:0005737 - cytoplasm	TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000063 - mimic response, TO:0000075 - light sensitivity, TO:0000447 - filled grain number, TO:0000431 - ear length, TO:0000180 - spikelet fertility, TO:0000592 - 1000-dehulled grain weight, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height	
23061	_		_	indole-3-acetate O-methyl- transferase 1-like, jasmonate O-methyltransferase			6	SABATH methyltransferase Group D.	 Biochemical character	Os06g0323100 	LOC_Os06g21820.2, LOC_Os06g21820.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009751 - response to salicylic acid stimulus, GO:0008168 - methyltransferase activity, GO:0032259 - methylation		
23062	_		_	glycine-rich RNA-binding protein			4			Os04g0653700  	LOC_Os04g55980.1				GO:0009751 - response to salicylic acid stimulus, GO:0016021 - integral to membrane		
23063	_		_	conserved hypothetical protein			8			Os08g0351300  	LOC_Os08g26230.2, LOC_Os08g26230.3, LOC_Os08g26230.4, LOC_Os08g26230.5, LOC_Os08g26230.6, LOC_Os08g26230.7				GO:0009751 - response to salicylic acid stimulus		
23064	_		_	conserved hypothetical protein			8			Os08g0395700  	LOC_Os08g30510.1				GO:0009751 - response to salicylic acid stimulus		
23065	KCS4	KCS, OsKCS4	3-KETOACYL-COA SYNTHASE 4	3-ketoacyl-CoA synthase	3-KETOACYL-COA SYNTHASE 4		2	GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0813600	LOC_Os02g56860.1				GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0006633 - fatty acid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009010 - seed 
23066	_		_	class III lipase, Triacylglycerol lipase			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0253900	LOC_Os01g15000.1				GO:0009651 - response to salt stress, GO:0016787 - hydrolase activity, GO:0006629 - lipid metabolic process, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance	
23067	_		_	class III lipase			11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0658900	LOC_Os11g43760.1				GO:0009651 - response to salt stress, GO:0006629 - lipid metabolic process, GO:0016787 - hydrolase activity, GO:0016042 - lipid catabolic process	TO:0006001 - salt tolerance	
23068	_		_	class III lipase			5	Q6F357.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0574100	LOC_Os05g49840.1				GO:0005737 - cytoplasm, GO:0008970 - phospholipase A1 activity, GO:0009651 - response to salt stress, GO:0016042 - lipid catabolic process	TO:0006001 - salt tolerance	
23069	FAR1	OsFAR1	FATTY ACYL-COA REDUCTASE 1	Fatty acyl-CoA reductase 1	FATTY ACYL-COA REDUCTASE 1		9	enzyme involving beta oxidation. GO:0102965: alcohol-forming fatty acyl-CoA reductase activity. GO:0035336: long-chain fatty-acyl-CoA metabolic process. GO:1903175: fatty alcohol biosynthetic process. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0567500	LOC_Os09g39410.1				GO:0030104 - water homeostasis, GO:0034309 - monohydric alcohol biosynthetic process, GO:0010025 - wax biosynthetic process, GO:0010229 - inflorescence development, GO:0009651 - response to salt stress, GO:0042335 - cuticle development, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0016021 - integral to membrane, GO:0010345 - suberin biosynthetic process, GO:0006629 - lipid metabolic process, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009628 - response to abiotic stimulus, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000136 - relative water content, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0000022 - plant cuticle , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009005 - root , PO:0025386 - cuticular wax , PO:0020148 - shoot apical meristem 
23070	FAR4	OsFAR4	FATTY ACYL-COA REDUCTASE 4	Fatty acyl-CoA reductase 4	FATTY ACYL-COA REDUCTASE 4		8	enzyme involving beta oxidation. GO:0102965: alcohol-forming fatty acyl-CoA reductase activity. GO:0035336: long-chain fatty-acyl-CoA metabolic process. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0557800	LOC_Os08g44360.1				GO:0006970 - response to osmotic stress, GO:0010345 - suberin biosynthetic process, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0006629 - lipid metabolic process, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010229 - inflorescence development, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus	TO:0000621 - inflorescence development trait, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage , PO:0020148 - shoot apical meristem , PO:0009005 - root 
23071	_	FBP	_	fructose bisphosphate aldolase			9		 Biochemical character,  Tolerance and resistance - Stress tolerance		LOC_Os09g02540.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
23073	CEST	OsCEST, OsY3IP1, Y3IP1	CHLOROPLAST PROTEIN-ENHANCING STRESS TOLERANCE	CHLOROPLAST ENHANCING STRESS TOLERANCE, Ycf3-interacting protein 1	YCF3-INTERACTING PROTEIN 1		1	Q5VQK9. GO:0080183: response to photooxidative stress. GO:1901562: response to paraquat. TO:0012004: quantum yield.	 Tolerance and resistance - Stress tolerance	Os01g0798500	LOC_Os01g58470.1				GO:0016021 - integral to membrane, GO:0009535 - chloroplast thylakoid membrane, GO:0009414 - response to water deprivation, GO:0048564 - photosystem I assembly, GO:0042538 - hyperosmotic salinity response, GO:0010286 - heat acclimation, GO:0009651 - response to salt stress, GO:0009658 - chloroplast organization, GO:0010446 - response to alkalinity, GO:0009507 - chloroplast, GO:0009635 - response to herbicide, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000316 - photosynthetic ability, TO:0000605 - hydrogen peroxide content, TO:0001016 - relative chlorophyll content, TO:0000516 - relative root length, TO:0000481 - alkali sensitivity, TO:0000058 - herbicide sensitivity, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0025034 - leaf 
23074	PSAO	OsPSAO, PsaO	PHOTOSYSTEM I SUBUNIT PSAO	Photosystem I PsaO, Photosystem I subunit PsaO	PHOTOSYSTEM I SUBUNIT PSAO		4		 Tolerance and resistance - Stress tolerance	Os04g0414700	LOC_Os04g33830.1				GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0016020 - membrane	TO:0006001 - salt tolerance	
23075	OLP1	PR5, OsOLP1	OSMOTIN-LIKE PROTEIN 1	osmotin, Thaumatin, osmotin-like protein 1	OSMOTIN-LIKE PROTEIN 1		1	TO:0020095: stomatal process related trait. GO:0090333: regulation of stomatal closure. GO:1901141: regulation of lignin biosynthetic process. GO:1902005: regulation of proline biosynthetic process.	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance	Os01g0839900	LOC_Os01g62260.1				GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009738 - abscisic acid mediated signaling, GO:0010119 - regulation of stomatal movement, GO:0030104 - water homeostasis, GO:0009809 - lignin biosynthetic process, GO:0006561 - proline biosynthetic process, GO:0005576 - extracellular region, GO:0006952 - defense response	TO:0000136 - relative water content, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content, TO:0000523 - stomatal resistance, TO:0006002 - proline content, TO:0000731 - lignin content, TO:0000733 - lignin biosynthesis trait	PO:0009005 - root , PO:0020141 - stem node , PO:0020104 - leaf sheath , PO:0009047 - stem 
23076	MPKK5	OsMPKK5	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5		MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5		6	BGIOSGA022452 (indica). GO:0023014: signal transduction by protein phosphorylation.	 Tolerance and resistance - Insect resistance	Os06g0191500	LOC_Os06g09190.1				GO:0032147 - activation of protein kinase activity, GO:0009624 - response to nematode, GO:0000187 - activation of MAPK activity, GO:0005524 - ATP binding, GO:0031098 - stress-activated protein kinase signaling pathway, GO:0004674 - protein serine/threonine kinase activity, GO:0005737 - cytoplasm, GO:0002215 - defense response to nematode, GO:0004708 - MAP kinase kinase activity	TO:0000384 - nematode damage resistance	
23077	PM27	OsPM27	_	seed maturation protein PM27			11	osa-miR164c target gene.	 Seed - Physiological traits	Os11g0673100	LOC_Os11g44940.1, LOC_Os11g44940.2				GO:0016021 - integral to membrane	TO:0000345 - seed viability	
23078	SDRLK42	SDRLK-42, OsSDRLK-42, OsSDRLK42	S-DOMAIN RECEPTOR LIKE KINASE-42	Receptor kinase 5, S-Domain receptor like kinase-42	S-DOMAIN RECEPTOR LIKE KINASE-42		9	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os09g0551400	LOC_Os09g37880.1				GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane	TO:0000315 - bacterial disease resistance	PO:0009010 - seed 
23079	ABA4	OsMHZ4, MHZ4, MHZ4/OsABA4, OsABA4	ABA DEFICIENT 4	maohuzi 4, abscisic acid-deficient 4		mhz4	1	Q5ZEG0. homologous to Arabidopsis thaliana (Arabidopsis) ABA4.	 Tolerance and resistance - Stress tolerance	Os01g0128300	LOC_Os01g03750.1				GO:0031969 - chloroplast membrane, GO:0010366 - negative regulation of ethylene biosynthetic process, GO:0009723 - response to ethylene stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0016021 - integral to membrane, GO:0009941 - chloroplast envelope, GO:0009414 - response to water deprivation, GO:0009688 - abscisic acid biosynthetic process, GO:0016123 - xanthophyll biosynthetic process	TO:0000173 - ethylene sensitivity, TO:0000276 - drought tolerance, TO:0002667 - abscisic acid content	
23080	_	Memp	_	Membrane protein			12	the most stable reference genes under aerobic and anaerobic conditions (Phule et al. 2018).		Os12g0514100	LOC_Os12g32950.1				GO:0006486 - protein amino acid glycosylation, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum		
23081	_	Exp1	_	Expressed protein			6	the most stable reference genes under aerobic and anaerobic conditions (Phule et al. 2018).		Os06g0686700	LOC_Os06g47230.1						
23082	SHI1	OsSHI1	SHORT INTERNODES1 	SHORT INTERNODES 1		shi1	9	SHI-Related Sequence (OsSRS) Gene Family. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os09g0531600	LOC_Os09g36160.1				GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation	TO:0006032 - panicle size, TO:0000276 - drought tolerance, TO:0000346 - tiller number	PO:0004709 - axillary bud , PO:0009030 - carpel , PO:0009066 - anther , PO:0009006 - shoot system , PO:0009005 - root 
23083	LSSR1	OsLSSR1	LOW SEED SETTING RATE1	LOW SEED SETTING RATE 1		lssr1	2	a putative GH5 cellulase.	 Reproductive organ - Pollination, fertilization, fertility,  Biochemical character,  Character as QTL - Yield and productivity	Os02g0596200	LOC_Os02g38260.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0009566 - fertilization, GO:0009556 - microsporogenesis, GO:0009846 - pollen germination, GO:0009860 - pollen tube growth, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000180 - spikelet fertility, TO:0000455 - seed set percent, TO:0000371 - yield trait	PO:0009066 - anther 
23084	_		_	LSSR1 paralog			4	a putative GH5 cellulase.	 Biochemical character	Os04g0480900	LOC_Os04g40490.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		PO:0009005 - root 
23085	_		_	LSSR1 paralog			4	a putative GH5 cellulase.	 Biochemical character	Os04g0481000	LOC_Os04g40500.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		PO:0009005 - root 
23086	_		_	LSSR1 paralog			4	a putative GH5 cellulase.	 Biochemical character	Os04g0481200	LOC_Os04g40510.2, LOC_Os04g40510.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		PO:0025034 - leaf 
23087	FGR1	OsFGR1, OsNPPR1, NPPR1	FLOURY AND GROWTH RETARDATION 1	floury and growth retardation1, nuclear-localized PPR protein 1	NUCLEAR-LOCALIZED PPR PROTEIN 1	fgr1	8	TO:0000949: seedling growth and development trait.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os08g0290000	LOC_Os08g19310.1				GO:0005634 - nucleus, GO:0009960 - endosperm development, GO:0008380 - RNA splicing, GO:0048316 - seed development	TO:0000696 - starch content, TO:0000653 - seed development trait, TO:0000196 - amylose content, TO:0000104 - floury endosperm, TO:0000602 - total fat content	PO:0025034 - leaf , PO:0009089 - endosperm , PO:0001170 - seed development stage , PO:0007633 - endosperm development stage 
23088	MICU1	OsMICU1	MITOCHONDRIAL CALCIUM UPTAKE 1	calcium uptake protein MICU1, mitochondrial calcium uptake 1			4			Os04g0502900	LOC_Os04g42430.1, LOC_Os04g42430.2				GO:0005509 - calcium ion binding, GO:0006851 - mitochondrial calcium ion transport		
23089	_		_	S subunit of the transamidase complex			1			Os01g0907300	LOC_Os01g67960.1				GO:0042765 - GPI-anchor transamidase complex, GO:0005774 - vacuolar membrane, GO:0016255 - attachment of GPI anchor to protein		
23090	_		_	OTU domain-containing protein			4			Os04g0670400	LOC_Os04g57480.1, LOC_Os04g57480.2, LOC_Os04g57480.3, LOC_Os04g57480.4, LOC_Os04g57480.5				GO:0004843 - ubiquitin-specific protease activity, GO:0016579 - protein deubiquitination, GO:0016021 - integral to membrane		
23091	PDS1	OsPDS1	PANICLE EXSERTION DEFECT AND ABERRANT SPIKELET 1	panicle exsertion defect and aberrant spikelet 1		pds1	8	TO:0000978: glume shape.	 Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os08g0155800	LOC_Os08g05950.1				GO:0009826 - unidimensional cell growth, GO:0048623 - seed germination on parent plant	TO:0000396 - grain yield, TO:0000339 - stem thickness, TO:0000657 - spikelet anatomy and morphology trait, TO:0000165 - panicle exsertion, TO:0000240 - sterile lemma length, TO:0000207 - plant height, TO:0000619 - vivipary, TO:0000145 - internode length	
23092	MTA2	OsMTA2, OsIME4, IME4, OsMTB, MTB	MRNA ADENOSINE METHYLASE 2	mRNA adenosine methylase 2, inducer of meiosis 4, OsIME4 sense transcript, RNA methyltransferase B	MRNA ADENOSINE METHYLASE 2	mta2	2	Q6EU10. a rice homolog of METTL3 (methyltransferase-like 3) in mammals. N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex.  GO:0036396: RNA N6-methyladenosine methyltransferase complex. 	 Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Seed - Morphological traits - Embryo,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os02g0672600	LOC_Os02g45110.1				GO:0009507 - chloroplast, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0001100 - negative regulation of exit from mitosis, GO:0000278 - mitotic cell cycle, GO:0016607 - nuclear speck, GO:0005634 - nucleus, GO:0045995 - regulation of embryonic development, GO:0009555 - pollen development, GO:0003723 - RNA binding, GO:0008168 - methyltransferase activity, GO:0001510 - RNA methylation, GO:0009793 - embryonic development ending in seed dormancy, GO:0080009 - mRNA methylation	TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000730 - mitotic cell cycle trait, TO:0000180 - spikelet fertility, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000620 - embryo development trait, TO:0000392 - sterility or fertility trait, TO:0000040 - panicle length	PO:0020003 - plant ovule , PO:0001007 - pollen development stage , PO:0007631 - plant embryo stage , PO:0009066 - anther 
23093	MTA1	OsMTA1, OsMTA, MTA	MRNA ADENOSINE METHYLASE 1	mRNA adenosine methylase 1, RNA methyltransferase A	MRNA ADENOSINE METHYLASE 1		1	N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex. GO:0036396: RNA N6-methyladenosine methyltransferase complex.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0267100	LOC_Os01g16180.4, LOC_Os01g16180.3, LOC_Os01g16180.1, LOC_Os01g16180.2				GO:0008168 - methyltransferase activity, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009611 - response to wounding, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0003676 - nucleic acid binding	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000074 - blast disease	
23094	MTA3	OsMTA3, OsMTC, MTC	MRNA ADENOSINE METHYLASE 3	mRNA adenosine methylase 3, RNA methyltransferase C	MRNA ADENOSINE METHYLASE 3		3	N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex. GO:0036396: RNA N6-methyladenosine methyltransferase complex.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0147700	LOC_Os03g05420.2, LOC_Os03g05420.1				GO:0003676 - nucleic acid binding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0008168 - methyltransferase activity	TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
23095	MTA4	OsMTA4, OsMTD, MTD	MRNA ADENOSINE METHYLASE 4	mRNA adenosine methylase 4, RNA methyltransferase D	MRNA ADENOSINE METHYLASE 4		10	N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex. GO:0036396: RNA N6-methyladenosine methyltransferase complex.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0447600	LOC_Os10g31030.1				GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0003676 - nucleic acid binding, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0008168 - methyltransferase activity	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000439 - fungal disease resistance, TO:0006001 - salt tolerance	
23096	GL6	OsGL6	GRAIN LENGTH 6 	Grain Length 6, PLATZ Transcription Factor GL6, plant AT-rich sequence- and zinc-binding protein GL6		gl6	6	MK959365 (Oryza rufipogon).		Os06g0666100	LOC_Os06g45540.1				GO:0008270 - zinc ion binding, GO:0008284 - positive regulation of cell proliferation	TO:0002759 - grain number, TO:0000734 - grain length, TO:0000456 - spikelet number, TO:0000447 - filled grain number	
23097	TFC1	OsTFC1	TRANSCRIPTION FACTOR CLASS C1	transcription factor class C1	TRANSCRIPTION FACTOR CLASS C1		1			Os01g0528000	LOC_Os01g34420.1				GO:0000127 - transcription factor TFIIIC complex, GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly		
23098	MDH1	OsMDH1, OsLdh2, Ldh2	MALATE DEHYDROGENASE 1	Malate dehydrogenase 1, Lactate Dehydrogenase 2	MALATE DEHYDROGENASE 1	osmdh1, osmdh1-1, osmdh1-2, osmdh1-3	1	GO:1901001: negative regulation of response to salt stress. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0829800	LOC_Os01g61380.1				GO:0005737 - cytoplasm, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0006950 - response to stress, GO:0005975 - carbohydrate metabolic process, GO:0006108 - malate metabolic process, GO:0009408 - response to heat, GO:0030060 - L-malate dehydrogenase activity, GO:0009507 - chloroplast, GO:0006099 - tricarboxylic acid cycle, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance	PO:0009039 - glume , PO:0009066 - anther , PO:0009029 - stamen , PO:0009030 - carpel , PO:0009009 - plant embryo , PO:0000025 - root tip , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009047 - stem , PO:0000055 - bud 
23099	PDX2 	OsPDX2	PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 2	Pyridoxal phosphate synthase protein 2	PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 2		2	GO:1903600: glutaminase complex.	 Biochemical character	Os02g0130100	LOC_Os02g03740.1				GO:0016740 - transferase activity, GO:0004359 - glutaminase activity, GO:0005829 - cytosol, GO:0042819 - vitamin B6 biosynthetic process, GO:0008614 - pyridoxine metabolic process, GO:0042823 - pyridoxal phosphate biosynthetic process, GO:0046982 - protein heterodimerization activity		
23100	PDX3	OsPDX3	PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 3	Pyridoxal phosphate synthase protein 3, pyridoxine/pyridoxamine oxidase, PN/PM oxidase	PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 3		10	GO:0052856: NADHX epimerase activity. GO:0052857: NADPHX epimerase activity.	 Biochemical character	Os10g0377800	LOC_Os10g23120.1				GO:0005829 - cytosol, GO:0006734 - NADH metabolic process, GO:0005739 - mitochondrion, GO:0004733 - pyridoxamine-phosphate oxidase activity, GO:0006739 - NADP metabolic process, GO:0046872 - metal ion binding, GO:0010181 - FMN binding, GO:0008615 - pyridoxine biosynthetic process, GO:0009507 - chloroplast		
23101	PLR1	OsPLR1, OsAKR2, AKR2	PYRIDOXAL REDUCTASE 1	pyridoxal reductase 1, Group 2 Aldo-Keto Reductase	PYRIDOXAL REDUCTASE 1		7	one of three members of Group 2 Aldo-Keto Reductase.	 Biochemical character	Os07g0143000	LOC_Os07g05000.1				GO:0016491 - oxidoreductase activity		
23102	CD1	OsCd1	_				3	TO:0020096: mineral and ion transport trait. TO:0006059: cadmium content trait.	 Biochemical character	Os03g0114800	LOC_Os03g02380.2, LOC_Os03g02380.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0015098 - molybdate ion transmembrane transporter activity, GO:0015691 - cadmium ion transport		PO:0020124 - root stele , PO:0005059 - root endodermis , PO:0000258 - root cortex , PO:0009005 - root , PO:0005772 - exodermis , PO:0025095 - root parenchyma 
23103	CYP94B5	OsCYP94B5	CYTOCHROME P450 94B5	Cytochrome P450 94B5	CYTOCHROME P450 94B5		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0443000	LOC_Os12g25660.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0009611 - response to wounding, GO:0009694 - jasmonic acid metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009651 - response to salt stress, GO:0020037 - heme binding	TO:0006001 - salt tolerance	
23104	CYP94C3	OsCYP94C3	CYTOCHROME P450 94C3	Cytochrome P450 94C3	CYTOCHROME P450 94C3		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0858350	LOC_Os01g63930.1, LOC_Os01g63930.2				GO:0009611 - response to wounding, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
23105	CYP94D5A	OsCYP94D5a	CYTOCHROME P450 94D5A	Cytochrome P450 94D5a	CYTOCHROME P450 94D5A		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0138300	LOC_Os11g04290.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0009611 - response to wounding, GO:0005506 - iron ion binding		
23106	CYP94D5B	OsCYP94D5b	CYTOCHROME P450 94D5B	Cytochrome P450 94D5b	CYTOCHROME P450 94D5B		12		 Biochemical character	Os12g0134900	LOC_Os12g04100.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
23107	CYP94D6	OsCYP94D6	CYTOCHROME P450 94D6	Cytochrome P450 94D6	CYTOCHROME P450 94D6		1		 Biochemical character	Os01g0804900	LOC_Os01g59050.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
23108	CYP94D9	OsCYP94D9	CYTOCHROME P450 94D9	Cytochrome P450 94D9	CYTOCHROME P450 94D9		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0804200	LOC_Os01g59000.1				GO:0005506 - iron ion binding, GO:0009694 - jasmonic acid metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009651 - response to salt stress, GO:0009611 - response to wounding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane	TO:0006001 - salt tolerance	
23109	CYP94D10	OsCYP94D10	CYTOCHROME P450 94D10	Cytochrome P450 94D10	CYTOCHROME P450 94D10		1		 Biochemical character	Os01g0804100	LOC_Os01g58990.1						
23110	CYP94D11	OsCYP94D11, OsCYPq1, CYPq1	CYTOCHROME P450 94D11	Cytochrome P450 94D11	CYTOCHROME P450 94D11		1		 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character	Os01g0803900	LOC_Os01g58970.1				GO:0004497 - monooxygenase activity, GO:0009686 - gibberellin biosynthetic process, GO:0020037 - heme binding, GO:0009611 - response to wounding, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding	TO:0000145 - internode length	
23111	CYP94D15	OsCYP94D15	CYTOCHROME P450 94D15	Cytochrome P450 94D15	CYTOCHROME P450 94D15		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0223100	LOC_Os03g12260.1				GO:0004497 - monooxygenase activity, GO:0009611 - response to wounding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
23112	CYP94E1	OsCYP94E1	CYTOCHROME P450 94E1	Cytochrome P450 94E1	CYTOCHROME P450 94E1		2		 Biochemical character	Os02g0596300	LOC_Os02g38290.1, LOC_Os02g38290.2				GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
23113	CYP94E2	OsCYP94E2	CYTOCHROME P450 94E2	Cytochrome P450 94E2	CYTOCHROME P450 94E2		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0951500	LOC_Os01g72260.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009611 - response to wounding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
23114	CYP94E3	OsCYP94E3	CYTOCHROME P450 94E3	Cytochrome P450 94E3	CYTOCHROME P450 94E3		5		 Biochemical character	Os05g0382500	LOC_Os05g31740.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
23115	CYP94D12	OsCYP94D12	CYTOCHROME P450 94D12	Cytochrome P450 94D12	CYTOCHROME P450 94D12		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0803800	LOC_Os01g58960.1				GO:0009611 - response to wounding, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
23116	AH1	OsAH1	AMIDOHYDROLASE 1	amidohydrolase 1	AMIDOHYDROLASE 1		4	Q7XUA8.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0521800	LOC_Os04g44110.1				GO:0009611 - response to wounding, GO:0010179 - IAA-Ala conjugate hydrolase activity, GO:0016787 - hydrolase activity, GO:0009850 - auxin metabolic process, GO:0005783 - endoplasmic reticulum		
23117	AH2	OsAH2	AMIDOHYDROLASE 2	amidohydrolase 2	AMIDOHYDROLASE 2		7	Q8H3C9.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0249700	LOC_Os07g14590.1				GO:0009850 - auxin metabolic process, GO:0005783 - endoplasmic reticulum, GO:0009611 - response to wounding, GO:0010179 - IAA-Ala conjugate hydrolase activity, GO:0016787 - hydrolase activity		
23118	AH3	OsAH3	AMIDOHYDROLASE 3	amidohydrolase 3	AMIDOHYDROLASE 3		7	Q8H3C7.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0249900	LOC_Os07g14610.1				GO:0016787 - hydrolase activity, GO:0010179 - IAA-Ala conjugate hydrolase activity, GO:0005783 - endoplasmic reticulum, GO:0009611 - response to wounding, GO:0009850 - auxin metabolic process		
23119	AH5	OsAH5	AMIDOHYDROLASE 5	amidohydrolase 5	AMIDOHYDROLASE 5		3	Q851L6. CT833422.	 Biochemical character	Os03g0836900	LOC_Os03g62070.1				GO:0005783 - endoplasmic reticulum, GO:0009850 - auxin metabolic process, GO:0016787 - hydrolase activity, GO:0010179 - IAA-Ala conjugate hydrolase activity		
23120	AH6	OsAH6	AMIDOHYDROLASE 6	amidohydrolase 6	AMIDOHYDROLASE 6		3	Q851L5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0836800	LOC_Os03g62060.1				GO:0005783 - endoplasmic reticulum, GO:0010179 - IAA-Ala conjugate hydrolase activity, GO:0016787 - hydrolase activity, GO:0009850 - auxin metabolic process, GO:0009611 - response to wounding		
23121	AH7	OsAH7	AMIDOHYDROLASE 7	amidohydrolase 7	AMIDOHYDROLASE 7		6	Q5Z678. GO:1990206: jasmonyl-Ile conjugate hydrolase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0691400	LOC_Os06g47620.1				GO:0009694 - jasmonic acid metabolic process, GO:0010112 - regulation of systemic acquired resistance, GO:0009753 - response to jasmonic acid stimulus, GO:0016787 - hydrolase activity, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0005783 - endoplasmic reticulum, GO:0009850 - auxin metabolic process, GO:0010179 - IAA-Ala conjugate hydrolase activity	TO:0006001 - salt tolerance	
23122	AH8	OsAH8	AMIDOHYDROLASE 8	amidohydrolase 8	AMIDOHYDROLASE 8		1	Q8S9S4.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0560000	LOC_Os01g37960.1				GO:0009611 - response to wounding, GO:0010179 - IAA-Ala conjugate hydrolase activity, GO:0009694 - jasmonic acid metabolic process, GO:0005783 - endoplasmic reticulum, GO:0009850 - auxin metabolic process, GO:0016787 - hydrolase activity		
23123	AH9	OsAH9	AMIDOHYDROLASE 9	amidohydrolase 9	AMIDOHYDROLASE 9		1	Q5N8F2.	 Biochemical character	Os01g0706900	LOC_Os01g51060.1				GO:0005783 - endoplasmic reticulum, GO:0010179 - IAA-Ala conjugate hydrolase activity, GO:0016787 - hydrolase activity, GO:0009850 - auxin metabolic process		
23124	SGRL	OsSGRL	SGR-LIKE	SGR-like	SGR-LIKE	ossgrl-1, ossgrl-2	4	Q0J8Q3.		Os04g0692600	LOC_Os04g59610.1, LOC_Os04g59610.2, LOC_Os04g59610.3				GO:0032026 - response to magnesium ion, GO:0042594 - response to starvation	TO:0000010 - magnesium sensitivity	
23125	FLZ14	OsFLZ14	FCS-LIKE ZINC FINGER PROTEIN 14	DUF851 domain-containing protein	FCS-LIKE ZINC FINGER PROTEIN 14		4	OsSUF4 target gene (Liu et al. 2019).		Os04g0586000	LOC_Os04g49660.1						PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009010 - seed , PO:0009030 - carpel , PO:0009066 - anther , PO:0009006 - shoot system 
23126	_		_				12	OsSUF4 target gene (Liu et al. 2019).		Os12g0406000	LOC_Os12g21784.1						
23127	FLO10	OsFLO10, WBG1, OsWBG1	FLOURY ENDOSPERM 10	floury endosperm10, white belly grain 1		flo10, wbg1	3	P-type pentatricopeptide repeat (PPR) protein. TO:0000942: aleurone layer morphology trait. TO:0000975: grain width. GO:2001169: regulation of ATP biosynthetic process. TO:0001109: grain color trait.	 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm	Os03g0168400	LOC_Os03g07220.1				GO:0010230 - alternative respiration, GO:0004526 - ribonuclease P activity, GO:0000373 - Group II intron splicing, GO:0048316 - seed development, GO:0009960 - endosperm development, GO:0043484 - regulation of RNA splicing, GO:0005739 - mitochondrion, GO:0032981 - mitochondrial respiratory chain complex I assembly, GO:0001682 - tRNA 5'-leader removal, GO:0000366 - intergenic nuclear mRNA trans splicing, GO:0010581 - regulation of starch biosynthetic process, GO:0006754 - ATP biosynthetic process	TO:0000382 - 1000-seed weight, TO:0000357 - growth and development trait, TO:0000604 - fat and essential oil content, TO:0000598 - protein content, TO:0000397 - grain size, TO:0000653 - seed development trait, TO:0000399 - grain thickness, TO:0000590 - grain weight, TO:0000196 - amylose content, TO:0000696 - starch content, TO:0002656 - starch grain shape, TO:0000447 - filled grain number, TO:0000486 - seed color, TO:0000266 - chalky endosperm, TO:0002655 - starch grain size, TO:0000104 - floury endosperm	PO:0025034 - leaf , PO:0007633 - endosperm development stage , PO:0001170 - seed development stage , PO:0009089 - endosperm , PO:0020104 - leaf sheath 
23128	WSL6	OsWSL6	WHITE STRIPE LEAF 6	white stripe leaf6		wsl6	5	B9FI63. Era-type GTP-binding protein.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os05g0567300	LOC_Os05g49220.2, LOC_Os05g49220.1				GO:0006364 - rRNA processing, GO:0009658 - chloroplast organization, GO:0005525 - GTP binding, GO:0003723 - RNA binding, GO:0042644 - chloroplast nucleoid, GO:0042254 - ribosome biogenesis	TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf	
23129	C2DP78	OsC2DP, C2DP, OsC2DP78	C2 DOMAIN-CONTAINING PROTEIN 78	C2 domain-containing protein, C2 Domain-Containing Protein 78	C2 DOMAIN-CONTAINING PROTEIN 78		9		 Tolerance and resistance - Stress tolerance	Os09g0571200	LOC_Os09g39770.1				GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0005829 - cytosol	TO:0000526 - sodium concentration, TO:0006001 - salt tolerance	PO:0009005 - root 
23130	FLU2	OsFLU2	FLUORESCENT 2	fluorescent2			2			Os02g0586800	LOC_Os02g37470.1				GO:0016021 - integral to membrane		
23131	GASR9	OsGASR9	GIBBERELLIC ACID-STIMULATED RICE 9	gibberellic acid-stimulated rice 9		osgasr9	7	PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0592000	LOC_Os07g40240.1				GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0009739 - response to gibberellin stimulus, GO:0009939 - positive regulation of gibberellic acid mediated signaling, GO:0005634 - nucleus	TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000449 - grain yield per plant, TO:0000397 - grain size, TO:0000396 - grain yield	
23132	DSNP1	OsCLR1, CLR1, OsDSNP1, OsRING318, RING318	DESYNAPSIS 1	cytoplasmic-localized RING finger protein 1, cytosol-localized RING finger protein 1, DESYNAPSIS1, RING-type E3 ubiquitin ligase 318	CYTOPLASMIC-LOCALIZED RING FINGER PROTEIN 1	dsnp1	6	GO:0061630: ubiquitin protein ligase activity. GO:1901002: positive regulation of response to salt stress. GO:1902584: positive regulation of response to water deprivation. GO:1905088: positive regulation of synaptonemal complex assembly. GO:0035825: homologous recombination.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os06g0633500	LOC_Os06g42700.1				GO:0009737 - response to abscisic acid stimulus, GO:0007130 - synaptonemal complex assembly, GO:0005829 - cytosol, GO:0009738 - abscisic acid mediated signaling, GO:0007129 - synapsis, GO:0051321 - meiotic cell cycle, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0006001 - salt tolerance, TO:0000218 - pollen abortion type, TO:0000430 - germination rate	
23133	ESA1	OsESA1	EMBRYO SAC ABORTION 1			esa1	1	nuclear-membrane localized protein containing an armadillo repeat domain.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os01g0524100	LOC_Os01g34010.1				GO:0000278 - mitotic cell cycle, GO:0016021 - integral to membrane	TO:0000358 - female sterility, TO:0000036 - hybrid incompatibility, TO:0000180 - spikelet fertility	
23134	GRA78	OsGRA78	GREEN-REVERTIBLE ALBINO 78	green-revertible albino 78		gra78	1		 Biochemical character,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os01g0814800	LOC_Os01g59920.1				GO:0009507 - chloroplast, GO:0005737 - cytoplasm, GO:0031977 - thylakoid lumen, GO:0009658 - chloroplast organization, GO:0004124 - cysteine synthase activity, GO:0016829 - lyase activity, GO:0030170 - pyridoxal phosphate binding, GO:0006535 - cysteine biosynthetic process from serine, GO:0015979 - photosynthesis, GO:0009643 - photosynthetic acclimation, GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0090322 - regulation of superoxide metabolic process	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	PO:0000003 - whole plant 
23135	SBDCP1	OsSBDCP1	STARCH BINDING DOMAIN-CONTAINING PROTEIN 1	starch binding domain-containing protein 1	STARCH BINDING DOMAIN-CONTAINING PROTEIN 1		1	GO:2001070: starch binding.	 Tolerance and resistance - Stress tolerance	Os01g0856900	LOC_Os01g63810.2, LOC_Os01g63810.1				GO:0009269 - response to desiccation, GO:0010581 - regulation of starch biosynthetic process	TO:0000097 - amylopectin content, TO:0000394 - drought related trait, TO:0000196 - amylose content	
23136	_	OsP1, P1	_				3		 Coloration - Anthocyanin	Os03g0303500	LOC_Os03g19120.1				GO:0031540 - regulation of anthocyanin biosynthetic process	TO:0000071 - anthocyanin content	
23137	SBDCP2	OsSBDCP2	STARCH BINDING DOMAIN-CONTAINING PROTEIN 2	starch binding domain-containing protein 2	STARCH BINDING DOMAIN-CONTAINING PROTEIN 2		5	GO:2001070: starch binding.		Os05g0446900	LOC_Os05g37450.1						
23138	RA1	OsRA1	RICE ALBINO 1	rice albino 1		ra1	6	glycyl-tRNA synthetase.	 Biochemical character,  Coloration - Chlorophyll,  Coloration - Others,  Vegetative organ - Leaf	Os06g0103600	LOC_Os06g01400.1				GO:0006426 - glycyl-tRNA aminoacylation, GO:0004820 - glycine-tRNA ligase activity, GO:0005524 - ATP binding, GO:0009658 - chloroplast organization, GO:0042254 - ribosome biogenesis, GO:0009507 - chloroplast, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0042794 - rRNA transcription from plastid promoter, GO:0009570 - chloroplast stroma, GO:0005739 - mitochondrion	TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	PO:0025034 - leaf , PO:0009047 - stem 
23139	PINE1	OsPINE1, DLN266, OsDLN266, DEC1, OsDEC1	PREMATURE INTERNODE ELONGATION 1	DLN repressor 266, DLN motif protein 266, DECELERATOR OF INTERNODE ELONGATION 1			12	zinc-finger transcription factor.	 Vegetative organ - Culm,  Reproductive organ - Heading date,  Vegetative organ - Root	Os12g0617000	LOC_Os12g42250.1				GO:0030912 - response to deep water, GO:0003676 - nucleic acid binding, GO:0009739 - response to gibberellin stimulus, GO:2000028 - regulation of photoperiodism, flowering, GO:0080006 - internode patterning	TO:0000145 - internode length, TO:0000227 - root length, TO:0000043 - root anatomy and morphology trait, TO:0000207 - plant height, TO:0000068 - lodging incidence, TO:0000166 - gibberellic acid sensitivity, TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0007089 - stem elongation stage 
23140	SF3B1	OsSF3B1, SGR	_	core splicing factor SF3B1, SF3B1-GEX1A-Resistant	_	SGR1, SGR2, SGR3, SGR4, SGR5, SGR6	2		 Tolerance and resistance - Stress tolerance	Os02g0146400	LOC_Os02g05310.4, LOC_Os02g05310.3, LOC_Os02g05310.2, LOC_Os02g05310.1				GO:0009635 - response to herbicide, GO:0003729 - mRNA binding, GO:0005681 - spliceosomal complex, GO:0010188 - response to microbial phytotoxin, GO:0043484 - regulation of RNA splicing, GO:0009651 - response to salt stress, GO:0000245 - spliceosome assembly	TO:0000058 - herbicide sensitivity, TO:0006001 - salt tolerance	
23141	DES4	OsDES4	DECREASED SPIKELETS 4	Decreased Spikelets 4		des4	2	Tetratricopeptide Repeat Domain-Containing Protein. a close ortholog of Arabidopsis BRU1. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os02g0782800					GO:0009933 - meristem structural organization, GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0006974 - response to DNA damage stimulus	TO:0000371 - yield trait, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000456 - spikelet number	PO:0000232 - axillary bud meristem 
23145	_	OsTPR	_	tetratrico peptide repeat (TPR) domain containing protein			3		 Tolerance and resistance - Stress tolerance	Os03g0308800	LOC_Os03g19560.1, LOC_Os03g19560.2, LOC_Os03g19560.3				GO:0006397 - mRNA processing, GO:0006417 - regulation of translation, GO:0009507 - chloroplast, GO:0003727 - single-stranded RNA binding		
23146	_		AAA-ATPASE 1	OsAAA-ATPase1, OsAAA-ATPase 1, AAA-ATPase1	AAA-ATPASE 1		1	OsAAA-ATPase2 in Liu et al. 2020.	 Tolerance and resistance - Disease resistance	Os01g0297200	LOC_Os01g19260.1				GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0009753 - response to jasmonic acid stimulus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
23147	_		AAA-ATPASE 2	OsAAA-ATPase2, OsAAA-ATPase 2, AAA-ATPase2	AAA- ATPASE 2		7			Os07g0192800	LOC_Os07g09490.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
23148	_		AAA-ATPASE 3	OsAAA-ATPase3, OsAAA-ATPase 3, AAA-ATPase3	AAA- ATPASE 3		7			Os07g0517800	LOC_Os07g33410.1				GO:0005524 - ATP binding		
23149	_		AAA-ATPASE 4	OsAAA-ATPase4, OsAAA-ATPase 4, AAA-ATPase4	AAA- ATPASE 4		12			Os12g0431100	LOC_Os12g24320.1				GO:0005524 - ATP binding		
23150	_		AAA-ATPASE 5	OsAAA-ATPase5, OsAAA-ATPase 5, AAA-ATPase5	AAA- ATPASE 5		12			Os12g0468000	LOC_Os12g28177.1				GO:0005524 - ATP binding		
23151	_		AAA-ATPASE 6	OsAAA-ATPase6, OsAAA-ATPase 6, AAA-ATPase6	AAA- ATPASE 6		12			Os12g0639200	LOC_Os12g44190.1				GO:0005524 - ATP binding		
23152	_		AAA-ATPASE 7	OsAAA-ATPase7, OsAAA-ATPase 7, AAA-ATPase7	AAA- ATPASE 7		5			Os05g0588850					GO:0005524 - ATP binding		
23153	DLN3	OsDLN3, OsPHD4, PHD4	DLN REPRESSOR 3	DLN repressor 3, DLN motif protein 3, Plant homeo-domain finger protein 4, PHD finger protein 4	DLN REPRESSOR 3		1	BGIOSGA002243. A2WLG2 (indica).			LOC_Os01g08820.1				GO:0046872 - metal ion binding		
23154	DLN4	OsDLN4	DLN REPRESSOR 4	DLN repressor 4, DLN motif protein 4	DLN REPRESSOR 4		1	GO:0044212: transcription regulatory region DNA binding.		Os01g0187900	LOC_Os01g09280.1				GO:0009723 - response to ethylene stimulus, GO:0046686 - response to cadmium ion, GO:0009733 - response to auxin stimulus, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus		
23155	DLN9	OsDLN9	DLN REPRESSOR 9	DLN repressor 9, DLN motif protein 9	DLN REPRESSOR 9		1	AB110194.		Os01g0318400	LOC_Os01g21590.1						
23156	DLN13	OsDLN13	DLN REPRESSOR 13	DLN repressor 13, DLN motif protein 13	DLN REPRESSOR 13		1			Os01g0603300	LOC_Os01g41900.1, LOC_Os01g41900.2				GO:0003677 - DNA binding, GO:0005634 - nucleus		
23157	DLN15	OsDLN15	DLN REPRESSOR 15	DLN repressor 15, DLN motif protein 15	DLN REPRESSOR 15		1	GO:0044212: transcription regulatory region DNA binding.		Os01g0648500	LOC_Os01g46020.1, LOC_Os01g46020.2				GO:0008134 - transcription factor binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003713 - transcription coactivator activity, GO:0035035 - histone acetyltransferase binding, GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly, GO:0005669 - transcription factor TFIID complex		
23158	ALT1	OsDLN22, DLN22, CHR706, OsCHR706, OsALT1, OsRING431, RING431	ALKALINE TOLERANCE 1	DLN repressor 22, DLN motif protein 22, chromatin remodeling factor 706, alkaline tolerance 1, RING-type E3 ubiquitin ligase 431	DLN REPRESSOR 22	alt1	1	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0779400	LOC_Os01g57110.1, LOC_Os01g57110.2				GO:0009414 - response to water deprivation, GO:0006979 - response to oxidative stress, GO:0005634 - nucleus, GO:0008094 - DNA-dependent ATPase activity, GO:0046872 - metal ion binding, GO:0006281 - DNA repair, GO:0044238 - primary metabolic process, GO:0044260 - cellular macromolecule metabolic process, GO:0010446 - response to alkalinity, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus	TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000481 - alkali sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
23159	DLN26	OsDLN26	DLN REPRESSOR 26	DLN repressor 26, DLN motif protein 26	DLN REPRESSOR 26		1	CT834905.		Os01g0838600	LOC_Os01g62130.1				GO:0003676 - nucleic acid binding		
23160	DLN29	OsDLN29, Os2R_MYB17, 2R_MYB17	DLN REPRESSOR 29	DLN repressor 29, DLN motif protein 29, R2R3-MYB Transcription Factor 17	DLN REPRESSOR 29		1	FJ940215.		Os01g0855400	LOC_Os01g63680.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
23161	DLN34	OsDLN34	DLN REPRESSOR 34	DLN repressor 34, DLN motif protein 34	DLN REPRESSOR 34		1	Q5N6V0.		Os01g0905400	LOC_Os01g67830.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
23162	DLN35	OsDLN35, OsRING210, RING210	DLN REPRESSOR 35	DLN repressor 35, DLN motif protein 35, RING-type E3 ubiquitin ligase 210	DLN REPRESSOR 35		1			Os01g0919500	LOC_Os01g69040.1, LOC_Os01g69040.2						
23163	DLN38	OsDLN38, OsFYVE03, OsFYVE3, FYVE03, FYVE3	DLN REPRESSOR 38	DLN repressor 38, DLN motif protein 38, FYVE Domain-containing protein 03	DLN REPRESSOR 38		1			Os01g0964800	LOC_Os01g73410.1				GO:0046872 - metal ion binding		
23164	DLN43	OsDLN43, CHR701, OsCHR701	DLN REPRESSOR 43	DLN repressor 43, DLN motif protein 43, chromatin remodeling factor 701	DLN REPRESSOR 43		2			Os02g0161400	LOC_Os02g06592.1						
23165	DLN45	OsDLN45	DLN REPRESSOR 45	DLN repressor 45, DLN motif protein 45	DLN REPRESSOR 45		2			Os02g0182700	LOC_Os02g08540.1						
23167	MBD710	OsDLN48, DLN48, OsMBD710, OsDLN47, DLN47, OsBrdST2, BrdST2	METHYL-CPG-BINDING PROTEIN 710	DLN repressor 48, DLN motif protein 48, methyl-CpG-binding protein 710, DLN repressor 47, DLN motif protein 47, bromodomain-containing protein singleton member 2, bromodomain-containing protein ST2	METHYL-CPG-BINDING PROTEIN 710		2	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os02g0192400	LOC_Os02g09910.1, LOC_Os02g09920.1				GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0046872 - metal ion binding	TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0009005 - root , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0020122 - inflorescence axis , PO:0009010 - seed , PO:0009051 - spikelet , PO:0025034 - leaf 
23168	DLN52	OsDLN52	DLN REPRESSOR 52	DLN repressor 52, DLN motif protein 52	DLN REPRESSOR 52		2			Os02g0241200	LOC_Os02g14490.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
23169	DLN54	OsDLN54	DLN REPRESSOR 54	DLN repressor 54, DLN motif protein 54	DLN REPRESSOR 54		2			Os02g0293900	LOC_Os02g19180.1				GO:0003676 - nucleic acid binding		
23170	DLN55	OsDLN55, OsDLN55a, OsDLN55b, DLN55a, DLN55b	DLN REPRESSOR 55	DLN repressor 55, DLN motif protein 55	DLN REPRESSOR 55		2			Os02g0450800	LOC_Os02g25310.1						
23171	DLN56	OsDLN56, CHR710, OsCHR710, OsRING283, RING283	DLN REPRESSOR 56	DLN repressor 56, DLN motif protein 56, chromatin remodeling factor 710, RING-type E3 ubiquitin ligase 283	DLN REPRESSOR 56		2	GO:0036297: interstrand cross-link repair. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance	Os02g0527100	LOC_Os02g32570.1, LOC_Os02g32570.2				GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0008094 - DNA-dependent ATPase activity, GO:0046872 - metal ion binding, GO:0006281 - DNA repair, GO:0044260 - cellular macromolecule metabolic process, GO:0044238 - primary metabolic process, GO:0009294 - DNA mediated transformation, GO:0045003 - double-strand break repair via synthesis-dependent strand annealing	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
23172	DLN61	OsDLN61	DLN REPRESSOR 61	DLN repressor 61, DLN motif protein 61	DLN REPRESSOR 61		2	GO:0001002: RNA polymerase III type 1 promoter sequence-specific DNA binding. GO:0001003: RNA polymerase III type 2 promoter sequence-specific DNA binding. 		Os02g0633100	LOC_Os02g42200.1, LOC_Os02g42200.3				GO:0000127 - transcription factor TFIIIC complex, GO:0006384 - transcription initiation from RNA polymerase III promoter, GO:0042791 - 5S class rRNA transcription		
23173	DLN62	OsDLN62	DLN REPRESSOR 62	DLN repressor 62, DLN motif protein 62	DLN REPRESSOR 62		2			Os02g0659100	LOC_Os02g44120.1				GO:0003676 - nucleic acid binding		
23174	DLN63	OsDLN63	DLN REPRESSOR 63	DLN repressor 63, DLN motif protein 63	DLN REPRESSOR 63		2			Os02g0659500	LOC_Os02g44130.1				GO:0003676 - nucleic acid binding		
23175	DLN66	OsDLN66	DLN REPRESSOR 66	DLN repressor 66, DLN motif protein 66	DLN REPRESSOR 66		2			Os02g0700300	LOC_Os02g47190.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
23176	DLN67	OsDLN67	DLN REPRESSOR 67	DLN repressor 67, DLN motif protein 67	DLN REPRESSOR 67		2			Os02g0723700	LOC_Os02g49190.1				GO:0006338 - chromatin remodeling, GO:0006337 - nucleosome disassembly, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0005634 - nucleus, GO:0016514 - SWI/SNF complex		
23177	DLN70	OsDLN70	DLN REPRESSOR 70	DLN repressor 70, DLN motif protein 70	DLN REPRESSOR 70		2			Os02g0817000	LOC_Os02g57200.1				GO:0003677 - DNA binding		
23178	DLN74	OsDLN74	DLN REPRESSOR 74	DLN repressor 74, DLN motif protein 74	DLN REPRESSOR 74		3			Os03g0127600	LOC_Os03g03560.1						
23179	DLN78	OsDLN78	DLN REPRESSOR 78	DLN repressor 78, DLN motif protein 78	DLN REPRESSOR 78		3			Os03g0196900	LOC_Os03g10070.1				GO:0070897 - transcriptional preinitiation complex assembly, GO:0009527 - plastid outer membrane, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000182 - rDNA binding, GO:0017025 - TATA-binding protein binding		
23180	DLN81	OsDLN81	DLN REPRESSOR 81	DLN repressor 81, DLN motif protein 81	DLN REPRESSOR 81		3			Os03g0279700	LOC_Os03g17150.1				GO:0003677 - DNA binding		
23181	DLN83	OsDLN83, OsPHD15, PHD15	DLN REPRESSOR 83	DLN repressor 83, DLN motif protein 83, Plant homeo-domain finger protein 15, PHD finger protein 15	DLN REPRESSOR 83		3	BGIOSGA012455. A2XFS2.	 Tolerance and resistance - Stress tolerance	Os03g0304400	LOC_Os03g19190.1				GO:0009651 - response to salt stress, GO:0046872 - metal ion binding	TO:0006001 - salt tolerance	
23182	DLN85	OsDLN85, OsDLN85a, OsDLN85b, DLN85a, DLN85b	DLN REPRESSOR 85	DLN repressor 85, DLN motif protein 85	DLN REPRESSOR 85		3			Os03g0325500	LOC_Os03g20900.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
23183	DLN87	OsDLN87	DLN REPRESSOR 87	DLN repressor 87, DLN motif protein 87	DLN REPRESSOR 87		3			Os03g0367800	LOC_Os03g25260.1				GO:0009909 - regulation of flower development, GO:0042826 - histone deacetylase binding, GO:0042802 - identical protein binding, GO:0046872 - metal ion binding, GO:0031491 - nucleosome binding, GO:0042742 - defense response to bacterium, GO:0043486 - histone exchange, GO:0048638 - regulation of developmental growth, GO:0000812 - Swr1 complex, GO:0031063 - regulation of histone deacetylation		
23184	DLN89	OsDLN89	DLN REPRESSOR 89	DLN repressor 89, DLN motif protein 89	DLN REPRESSOR 89		3			Os03g0425900	LOC_Os03g31240.1				GO:0003676 - nucleic acid binding		
23185	DLN92	OsDLN92	DLN REPRESSOR 92	DLN repressor 92, DLN motif protein 92	DLN REPRESSOR 92		3			Os03g0425900	LOC_Os03g41390.1				GO:0003676 - nucleic acid binding		
23186	DLN94	OsDLN94	DLN REPRESSOR 94	DLN repressor 94, DLN motif protein 94	DLN REPRESSOR 94		3	Q851V5.		Os03g0621600	LOC_Os03g42370.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
23187	DLN97	OsDLN97, OsGeBP7, GeBP7	DLN REPRESSOR 97	DLN repressor 97, DLN motif protein 97, GLABROUS1 Enhancer-Binding Protein 7	DLN REPRESSOR 97		3	PO:0030123: panicle inflorescence.		Os03g0708800	LOC_Os03g50110.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0043565 - sequence-specific DNA binding	TO:0000167 - cytokinin sensitivity	PO:0009038 - palea , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0009037 - lemma , PO:0000003 - whole plant 
23188	DLN101	OsDLN101	DLN REPRESSOR 101	DLN repressor 101, DLN motif protein 101	DLN REPRESSOR 101		3			Os03g0764450	LOC_Os03g55570.1						
23189	DLN105	OsDLN105	DLN REPRESSOR 105	DLN repressor 105, DLN motif protein 105	DLN REPRESSOR 105		3				LOC_Os03g60540.1				GO:0003676 - nucleic acid binding		
23190	DLN107	OsDLN107, WACH1, OsWACH1	DLN REPRESSOR 107	DLN repressor 107, DLN motif protein 107, Wall Associated C2H2 protein 1	DLN REPRESSOR 107		4			Os04g0162500	LOC_Os04g08060.1				GO:0003676 - nucleic acid binding		
23191	DLN109	OsDLN109, OsRING375, RING375	DLN REPRESSOR 109	DLN repressor 109, DLN motif protein 109, RING-type E3 ubiquitin ligase 375	DLN REPRESSOR 109		4			Os04g0289800	LOC_Os04g22240.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus		
23192	DLN114	OsDLN114	DLN REPRESSOR 114	DLN repressor 114, DLN motif protein 114	DLN REPRESSOR 114		4			Os04g0471000	LOC_Os04g39520.1				GO:0003676 - nucleic acid binding		
23193	DLN118	OsDLN118	DLN REPRESSOR 118	DLN repressor 118, DLN motif protein 118	DLN REPRESSOR 118		4			Os04g0552700	LOC_Os04g46680.1				GO:0003676 - nucleic acid binding		
23194	DLN122	OsDLN122, OsRING423, RING423	DLN REPRESSOR 122	DLN repressor 122, DLN motif protein 122, RING-type E3 ubiquitin ligase 423	DLN REPRESSOR 122		4			Os04g0648500	LOC_Os04g55480.1, LOC_Os04g55480.2				GO:0046982 - protein heterodimerization activity, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0010029 - regulation of seed germination, GO:0004842 - ubiquitin-protein ligase activity		
23195	DLN127	OsDLN127	DLN REPRESSOR 127	DLN repressor 127, DLN motif protein 127	DLN REPRESSOR 127		4	Q7XKC5.		Os04g0676600	LOC_Os04g58000.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
23196	DLN129	OsDLN129	DLN REPRESSOR 129	DLN repressor 129, DLN motif protein 129	DLN REPRESSOR 129		5	C2H2 zinc finger protein.		Os05g0114400	LOC_Os05g02390.1				GO:0003676 - nucleic acid binding		
23197	DLN135	OsDLN135	DLN REPRESSOR 135	DLN repressor 135, DLN motif protein 135	DLN REPRESSOR 135		5			Os05g0292200	LOC_Os05g22670.1				GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0006366 - transcription from RNA polymerase II promoter, GO:0005672 - transcription factor TFIIA complex		
23198	DLN136	OsDLN136	DLN REPRESSOR 136	DLN repressor 136, DLN motif protein 136	DLN REPRESSOR 136		5	CT836441. GO:0044212: transcription regulatory region DNA binding.		Os05g0347000	LOC_Os05g28010.2, LOC_Os05g28010.1				GO:0005669 - transcription factor TFIID complex, GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly, GO:0003713 - transcription coactivator activity, GO:0008134 - transcription factor binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0035035 - histone acetyltransferase binding		
23199	DLN139	OsDLN139, OsRING386, RING386	DLN REPRESSOR 139	DLN repressor 139, DLN motif protein 139, RING-type E3 ubiquitin ligase 386	DLN REPRESSOR 139		5			Os05g0422300	LOC_Os05g34880.1, LOC_Os05g34880.2				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0046872 - metal ion binding		
23200	DLN142	OsDLN142	DLN REPRESSOR 142	DLN repressor 142, DLN motif protein 142	DLN REPRESSOR 142		5			Os05g0444200	LOC_Os05g37190.1				GO:0010468 - regulation of gene expression, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
23201	DLN143	OsDLN143, OsMYB3R2-L, MYB3R2-L	DLN REPRESSOR 143	DLN repressor 143, DLN motif protein 143, R1R2R3 MYB-2-like, MYB3R transcription factor 2-like, OsMYB3R2-like, MYB3R2-like	DLN REPRESSOR 143	osmyb3r2-l, osmyb3r2-l-1, osmyb3r2-l-2	5			Os05g0459000	LOC_Os05g38460.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
23202	DLN144	OsDLN144	DLN REPRESSOR 144	DLN repressor 144, DLN motif protein 144	DLN REPRESSOR 144		5	C2H2 zinc finger protein.		Os05g0460900	LOC_Os05g38600.1				GO:0003676 - nucleic acid binding, GO:0045892 - negative regulation of transcription, DNA-dependent		
23203	DLN145	OsDLN145	DLN REPRESSOR 145	DLN repressor 145, DLN motif protein 145	DLN REPRESSOR 145		5			Os05g0461200	LOC_Os05g38620.1				GO:0003676 - nucleic acid binding		
23204	DLN147	OsDLN147, OsDLN147a, OsDLN147b, DLN147a, DLN147b	DLN REPRESSOR 147	DLN repressor 147, DLN motif protein 147	DLN REPRESSOR 147		5			Os05g0488600	LOC_Os05g40960.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
23205	DLN160	OsDLN160	DLN REPRESSOR 160	DLN repressor 160, DLN motif protein 160	DLN REPRESSOR 160		6			Os06g0209300	LOC_Os06g10690.1, LOC_Os06g10690.2				GO:0046872 - metal ion binding		
23206	DLN162	OsDLN162, OsDLN162a, OsDLN162b, DLN162a, ODLN162b	DLN REPRESSOR 162	DLN repressor 162, DLN motif protein 162	DLN REPRESSOR 162		6				LOC_Os06g10800.1						
23207	DLN164	OsDLN164	DLN REPRESSOR 164	DLN repressor 164, DLN motif protein 164	DLN REPRESSOR 164		6			Os06g0304200	LOC_Os06g20020.1				GO:0003676 - nucleic acid binding		
23208	DLN166	OsDLN166	DLN REPRESSOR 166	DLN repressor 166, DLN motif protein 166	DLN REPRESSOR 166		6				LOC_Os06g28300.1						
23209	DLN168	OsDLN168	DLN REPRESSOR 168	DLN repressor 168, DLN motif protein 168	DLN REPRESSOR 168		6			Os06g0543200	LOC_Os06g35140.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
23210	DLN169	OsDLN169	DLN REPRESSOR 169	DLN repressor 169, DLN motif protein 169	DLN REPRESSOR 169		6			Os06g0646700	LOC_Os06g43870.2						
23211	DLN173	OsDLN173	DLN REPRESSOR 173	DLN repressor 173, DLN motif protein 173	DLN REPRESSOR 173		6	GO:0001042: RNA polymerase I core binding. GO:0001181: RNA polymerase I general transcription initiation factor activity.		Os06g0688100	LOC_Os06g47350.1, LOC_Os06g47350.2				GO:0006361 - transcription initiation from RNA polymerase I promoter, GO:0005634 - nucleus		
23212	DU13	OsDLN175, DLN175, OsSE, SE, OsDU13, ZOS6-09, OsZOS6-09	DULL 13	DLN repressor 175, DLN motif protein 175, SERRATE, Dull endosperm 13, zinc-finger protein TFIIIA class of Oryza sativa 6-09, ZPT of Oryza sativa 6-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-09	du13	6	PO:0030123: panicle inflorescence. TO:0001069: cooking quality trait.	 Character as QTL - Grain quality,  Vegetative organ - Culm,  Reproductive organ - panicle,  Seed - Physiological traits - Storage substances	Os06g0698859	LOC_Os06g48530.1				GO:0006397 - mRNA processing, GO:0003676 - nucleic acid binding, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0000380 - alternative nuclear mRNA splicing, via spliceosome, GO:0035196 - production of miRNAs involved in gene silencing by miRNA, GO:0005634 - nucleus	TO:0000391 - seed size, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0000602 - total fat content, TO:0000374 - breakdown viscosity, TO:0000409 - peak viscosity, TO:0000196 - amylose content, TO:0000105 - dull endosperm	PO:0009089 - endosperm , PO:0001170 - seed development stage , PO:0009005 - root , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009049 - inflorescence 
23213	DLN177	OsDLN177	DLN REPRESSOR 177	DLN repressor 177, DLN motif protein 177	DLN REPRESSOR 177		6			Os06g0727000	LOC_Os06g51140.1				GO:0003676 - nucleic acid binding, GO:0046872 - metal ion binding		
23214	DLN178	OsDLN178	DLN REPRESSOR 178	DLN repressor 178, DLN motif protein 178	DLN REPRESSOR 178		7	GO:0002151: G-quadruplex RNA binding. GO:0044545: NSL complex.		Os07g0190900	LOC_Os07g09320.1				GO:0043982 - histone H4-K8 acetylation, GO:0043981 - histone H4-K5 acetylation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0031011 - Ino80 complex, GO:0071339 - MLL1 complex, GO:0043984 - histone H4-K16 acetylation		
23215	DLN182	OsDLN182, Os2R_MYB68, 2R_MYB68	DLN REPRESSOR 182	DLN repressor 182, DLN motif protein 182, R2R3-MYB Transcription Factor 68	DLN REPRESSOR 182		7			Os07g0244500	LOC_Os07g14110.1						
23216	DLN187	OsDLN187	DLN REPRESSOR 187	DLN repressor 187, DLN motif protein 187	DLN REPRESSOR 187		7	GO:0001085: RNA polymerase II transcription factor binding.		Os07g0568200	LOC_Os07g38080.1, LOC_Os07g38080.2				GO:0003714 - transcription corepressor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		
23217	DLN191	OsDLN191	DLN REPRESSOR 191	DLN repressor 191, DLN motif protein 191	DLN REPRESSOR 191		7			Os07g0588600	LOC_Os07g39960.1				GO:0003676 - nucleic acid binding		
23218	DLN193	OsDLN193	DLN REPRESSOR 193	DLN repressor 193, DLN motif protein 193	DLN REPRESSOR 193		7			Os07g0590100	LOC_Os07g40080.1				GO:0003676 - nucleic acid binding		
23219	DLN194	OsDLN194	DLN REPRESSOR 194	DLN repressor 194, DLN motif protein 194	DLN REPRESSOR 194		7	CT836133.		Os07g0598800	LOC_Os07g40780.1				GO:0003676 - nucleic acid binding		
23220	DLN196	OsDLN196	DLN REPRESSOR 196	DLN repressor 196, DLN motif protein 196	DLN REPRESSOR 196		7			Os07g0685300	LOC_Os07g48596.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
23221	DLN197	OsDLN197	DLN REPRESSOR 197	DLN repressor 197, DLN motif protein 197	DLN REPRESSOR 197		7			Os07g0689950/Os07g0690100	LOC_Os07g49010.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
23222	DLN199	OsDLN199	DLN REPRESSOR 199	DLN repressor 199, DLN motif protein 199	DLN REPRESSOR 199		7			Os07g0694500	LOC_Os07g49380.1, LOC_Os07g49380.2				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003677 - DNA binding		
23223	DLN200	OsDLN200, OsRING15, RING15	DLN REPRESSOR 200	DLN repressor 200, DLN motif protein 200, RING-type E3 ubiquitin ligase 15	DLN REPRESSOR 200		8			Os08g0100400	LOC_Os08g01040.1				GO:0008270 - zinc ion binding, GO:0030433 - ER-associated protein catabolic process, GO:0030176 - integral to endoplasmic reticulum membrane, GO:0016021 - integral to membrane		
23224	DLN202	OsDLN202, OsRING17, RING17	DLN REPRESSOR 202	DLN repressor 202, DLN motif protein 202, RING-type E3 ubiquitin ligase 17	DLN REPRESSOR 202		8			Os08g0151700	LOC_Os08g05560.1				GO:0008233 - peptidase activity		
23225	DLN204	OsDLN204, OsRING391, RING391	DLN REPRESSOR 204	DLN repressor 204, DLN motif protein 204, RING-type E3 ubiquitin ligase 391	DLN REPRESSOR 204		8	GO:0044390: ubiquitin-like protein conjugating enzyme binding. GO:0061630: ubiquitin protein ligase activity.		Os08g0162400	LOC_Os08g06510.1				GO:0071712 - ER-associated misfolded protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process		
23226	DLN207	OsDLN207	DLN REPRESSOR 207	DLN repressor 207, DLN motif protein 207	DLN REPRESSOR 207		8				LOC_Os08g19890.1						
23227	DLN208	OsDLN208	DLN REPRESSOR 208	DLN repressor 208, DLN motif protein 208	DLN REPRESSOR 208		8	GO:0000993: RNA polymerase II complex binding. GO:0001097: TFIIH-class transcription factor complex binding. GO 0001113: transcriptional open complex formation at RNA polymerase II promoter.		Os08g0343300	LOC_Os08g25460.1				GO:0005673 - transcription factor TFIIE complex		
23228	DLN210	OsDLN210	DLN REPRESSOR 210	DLN repressor 210, DLN motif protein 210	DLN REPRESSOR 210		8			Os08g0434700	LOC_Os08g33750.1, LOC_Os08g33750.2				GO:0003677 - DNA binding, GO:0005634 - nucleus		
23229	DLN212	OsDLN212	DLN REPRESSOR 212	DLN repressor 212, DLN motif protein 212	DLN REPRESSOR 212		8			Os08g0504000	LOC_Os08g39390.1				GO:0005634 - nucleus, GO:0003676 - nucleic acid binding, GO:0010468 - regulation of gene expression		
23230	DLN226	OsDLN226, OsDLN226a, OsDLN226b, DLN226a, DLN226b	DLN REPRESSOR 226	DLN repressor 226, DLN motif protein 226	DLN REPRESSOR 226		9	CT835883. GO:0001227: DNA-binding transcription repressor activity, RNA polymerase II-specific.		Os09g0473300/Os09g0473350	LOC_Os09g29750.1				GO:0010564 - regulation of cell cycle process, GO:0017053 - transcriptional repressor complex, GO:0005634 - nucleus, GO:0000122 - negative regulation of transcription from RNA polymerase II promoter		
23231	DLN232	OsDLN232, OsDHHC24, DHHC24	DLN REPRESSOR 232	DLN repressor 232, DLN motif protein 232, DHHC domain protein 24	DLN REPRESSOR 232		10		 Biochemical character	Os10g0337500	LOC_Os10g19180.1				GO:0006612 - protein targeting to membrane, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine		
23232	DLN235	OsDLN235	DLN REPRESSOR 235	DLN repressor 235, DLN motif protein 235	DLN REPRESSOR 235		10				LOC_Os10g29260.1						
23233	DLN238	OsDLN238	DLN REPRESSOR 238	DLN repressor 238, DLN motif protein 238	DLN REPRESSOR 238		10			Os10g0490400	LOC_Os10g34884.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding		
23234	DLN242	OsDLN242, OsDLN242a, OsDLN242b, DLN242a, DLN242b	DLN REPRESSOR 242	DLN repressor 242, DLN motif protein 242	DLN REPRESSOR 242		10			Os10g0572400/Os10g0572500	LOC_Os10g42196.1						
23235	DLN244	OsDLN244	DLN REPRESSOR 244	DLN repressor 244, DLN motif protein 244	DLN REPRESSOR 244		11	GO:0000993: RNA polymerase II complex binding. GO:0001097: TFIIH-class transcription factor complex binding. GO:0001113: transcriptional open complex formation at RNA polymerase II promoter.		Os11g0137400	LOC_Os11g04230.1				GO:0005673 - transcription factor TFIIE complex		
23236	DLN248	OsDLN248	DLN REPRESSOR 248	DLN repressor 248, DLN motif protein 248	DLN REPRESSOR 248		11			Os11g0292050/Os11g0292750	LOC_Os11g18770.2, LOC_Os11g18770.1				GO:0046872 - metal ion binding		
23237	DLN249	OsDLN249, OsDHHC27, DHHC27	DLN REPRESSOR 249	DLN repressor 249, DLN motif protein 249, DHHC domain protein 27	DLN REPRESSOR 249		11		 Biochemical character	Os11g0549700	LOC_Os11g34860.1, LOC_Os11g34860.2				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0006612 - protein targeting to membrane		
23238	DLN251	OsDLN251	DLN REPRESSOR 251	DLN repressor 251, DLN motif protein 251	DLN REPRESSOR 251		12	A3CEM4.		Os12g0129550	LOC_Os12g03554.1				GO:0046872 - metal ion binding, GO:0003677 - DNA binding		
23239	DLN258	OsDLN258, OsPHD44, PHD44	DLN REPRESSOR 258	DLN repressor 258, DLN motif protein 258, Plant homeo-domain finger protein 44, PHD finger protein 44	DLN REPRESSOR 258		12	BGIOSGA036283. B8BPD7 (indica).		Os12g0433133/Os12g0433200	LOC_Os12g24540.1						
23240	DLN260	OsDLN260	DLN REPRESSOR 260	DLN repressor 260, DLN motif protein 260	DLN REPRESSOR 260		12			Os12g0578600	LOC_Os12g38940.1				GO:0003676 - nucleic acid binding		
23241	DLN261	OsDLN261, OsDLN261a, OsDLN261b, DLN261a, DLN261b	DLN REPRESSOR 261	DLN repressor 261, DLN motif protein 261	DLN REPRESSOR 261		12			Os12g0578700	LOC_Os12g38950.1						
23242	DLN262	OsDLN262	DLN REPRESSOR 262	DLN repressor 262, DLN motif protein 262	DLN REPRESSOR 262		12			Os12g0581900	LOC_Os12g39220.1				GO:0003676 - nucleic acid binding		
23243	DLN224	OsDLN224	DLN REPRESSOR 224	DLN repressor 224, DLN motif protein 224	DLN REPRESSOR 224		9			Os09g0431900	LOC_Os09g26210.1				GO:0003676 - nucleic acid binding		
23244	GATL1	OsGATL1	GALACTURONOSYLTRANSFERASE-LIKE 1	galacturonosyltransferase-like 1	GALACTURONOSYLTRANSFERASE-LIKE 1		10				LOC_Os10g31650.1						PO:0009066 - anther 
23245	GATL2	OsGATL2	GALACTURONOSYLTRANSFERASE-LIKE 2	galacturonosyltransferase-like 2	GALACTURONOSYLTRANSFERASE-LIKE 2		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0678800	LOC_Os03g47530.1				GO:0005794 - Golgi apparatus, GO:0009409 - response to cold, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0000303 - cold tolerance	
23246	GATL3	OsGATL3	GALACTURONOSYLTRANSFERASE-LIKE 3	galacturonosyltransferase-like 3	GALACTURONOSYLTRANSFERASE-LIKE 3		3		 Biochemical character	Os03g0359600	LOC_Os03g24510.1				GO:0005794 - Golgi apparatus, GO:0016757 - transferase activity, transferring glycosyl groups		PO:0009066 - anther 
23247	GATL5	OsGATL5	GALACTURONOSYLTRANSFERASE-LIKE 5	galacturonosyltransferase-like 5	GALACTURONOSYLTRANSFERASE-LIKE 5		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0530900	LOC_Os04g44850.1				GO:0009409 - response to cold, GO:0005794 - Golgi apparatus, GO:0016757 - transferase activity, transferring glycosyl groups	TO:0000303 - cold tolerance	
23248	GATL7	OsGATL7	GALACTURONOSYLTRANSFERASE-LIKE 7	galacturonosyltransferase-like 7	GALACTURONOSYLTRANSFERASE-LIKE 7		6		 Biochemical character	Os06g0247000	LOC_Os06g13760.1				GO:0016757 - transferase activity, transferring glycosyl groups		
23249	GATL8	OsGATL8	GALACTURONOSYLTRANSFERASE-LIKE 8	galacturonosyltransferase-like 8	GALACTURONOSYLTRANSFERASE-LIKE 8		3		 Biochemical character	Os03g0300900	LOC_Os03g18890.1				GO:0005794 - Golgi apparatus, GO:0016757 - transferase activity, transferring glycosyl groups		
23250	GAUT1	OsGAUT1	GALACTURONOSYLTRANSFERASE 1	galacturonosyltransferase 1	GALACTURONOSYLTRANSFERASE 1		3	GO:0071555: cell wall organization.	 Biochemical character	Os09g0531701/Os09g0531800	LOC_Os09g36180.1				GO:0000139 - Golgi membrane, GO:0045489 - pectin biosynthetic process, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity		
23251	GAUT10	OsGAUT10	GALACTURONOSYLTRANSFERASE 10	galacturonosyltransferase 10	GALACTURONOSYLTRANSFERASE 10		3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0413400	LOC_Os03g30000.1				GO:0000139 - Golgi membrane, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0045489 - pectin biosynthetic process, GO:0016021 - integral to membrane		
23252	GAUT11	OsGAUT11	GALACTURONOSYLTRANSFERASE 11	galacturonosyltransferase 11	GALACTURONOSYLTRANSFERASE 11		2	GO:0071555: cell wall organization.	 Biochemical character	Os02g0745400	LOC_Os02g51130.1				GO:0000139 - Golgi membrane, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0045489 - pectin biosynthetic process		
23253	GAUT12	OsGAUT12	GALACTURONOSYLTRANSFERASE 12	galacturonosyltransferase 12	GALACTURONOSYLTRANSFERASE 12		6	GO:0071555: cell wall organization.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0227250	LOC_Os06g12280.1				GO:0045489 - pectin biosynthetic process, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0000139 - Golgi membrane, GO:0010238 - response to proline, GO:0042545 - cell wall modification	TO:0000034 - chromium sensitivity	
23254	GAUT13	OsGAUT13	GALACTURONOSYLTRANSFERASE 13	galacturonosyltransferase 13	GALACTURONOSYLTRANSFERASE 13		2		 Biochemical character	Os02g0498700	LOC_Os02g29530.1				GO:0010289 - homogalacturonan biosynthetic process, GO:0005739 - mitochondrion, GO:0005802 - trans-Golgi network, GO:0005768 - endosome, GO:0000139 - Golgi membrane, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity		
23255	GAUT14	OsGAUT14	GALACTURONOSYLTRANSFERASE 14	galacturonosyltransferase 14	GALACTURONOSYLTRANSFERASE 14		11	GO:0071555: cell wall organization.	 Biochemical character	Os11g0592300	LOC_Os11g37980.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0000139 - Golgi membrane, GO:0045489 - pectin biosynthetic process		
23256	GAUT15	OsGAUT15	GALACTURONOSYLTRANSFERASE 15	galacturonosyltransferase 15	GALACTURONOSYLTRANSFERASE 15		3	GO:0071555: cell wall organization.	 Biochemical character	Os03g0330000	LOC_Os03g21250.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0045489 - pectin biosynthetic process, GO:0000139 - Golgi membrane		
23257	GAUT16	OsGAUT16	GALACTURONOSYLTRANSFERASE 16	galacturonosyltransferase 16	GALACTURONOSYLTRANSFERASE 16		7	GO:0071555: cell wall organization.	 Biochemical character	Os07g0681700	LOC_Os07g48370.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0000139 - Golgi membrane, GO:0045489 - pectin biosynthetic process		
23258	GAUT17	OsGAUT17	GALACTURONOSYLTRANSFERASE 17	galacturonosyltransferase 17	GALACTURONOSYLTRANSFERASE 17		5	UGT. metabolite: DIMBOA glucoside.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0485500	LOC_Os05g40720.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
23259	GAUT18	OsGAUT18	GALACTURONOSYLTRANSFERASE 18	galacturonosyltransferase 18	GALACTURONOSYLTRANSFERASE 18		11	GO:0071555: cell wall organization.	 Biochemical character	Os11g0124900	LOC_Os11g03160.1				GO:0000139 - Golgi membrane, GO:0045489 - pectin biosynthetic process, GO:0016021 - integral to membrane, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity		
23260	GAUT19	OsGAUT19	GALACTURONOSYLTRANSFERASE 19	galacturonosyltransferase 19	GALACTURONOSYLTRANSFERASE 19		12		 Tolerance and resistance - Stress tolerance	Os12g0122400	LOC_Os12g02910.1				GO:0042545 - cell wall modification, GO:0016021 - integral to membrane, GO:0010238 - response to proline, GO:0016020 - membrane	TO:0000034 - chromium sensitivity	
23261	PDT1	OsGAUT2, GAUT, OsPDT1	PECTIN-DEFECTIVE TAPETUM 1	galacturonosyltransferase 2, pectin-defective tapetum1	GALACTURONOSYLTRANSFERASE 2	ospdt1	9	homologous to AtGAUT1. GO:0071555: cell wall organization.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os09g0531900	LOC_Os09g36190.1, LOC_Os09g36190.2				GO:0000139 - Golgi membrane, GO:0016021 - integral to membrane, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0045489 - pectin biosynthetic process, GO:0048653 - anther development, GO:0009756 - carbohydrate mediated signaling, GO:0010289 - homogalacturonan biosynthetic process, GO:0005794 - Golgi apparatus, GO:0043067 - regulation of programmed cell death, GO:0010208 - pollen wall assembly, GO:0009901 - anther dehiscence	TO:0000245 - pollen free, TO:0000218 - pollen abortion type, TO:0000437 - male sterility	PO:0009047 - stem , PO:0009051 - spikelet , PO:0009005 - root , PO:0001004 - anther development stage , PO:0025545 - anther wall tapetum cell , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0020048 - microspore , PO:0000032 - tetrad of microspores , PO:0009066 - anther 
23262	IRX8L	OsGAUT20, GAUT20, OsIRX8L	IRREGULAR XYLEM 8L	galacturonosyltransferase 20	GALACTURONOSYLTRANSFERASE 20		12	GO:0071555: cell wall organization.	 Biochemical character	Os12g0578500	LOC_Os12g38930.1				GO:0016021 - integral to membrane, GO:0045489 - pectin biosynthetic process, GO:0000139 - Golgi membrane, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity		PO:0009049 - inflorescence 
23263	GAUT21	OsGAUT21	GALACTURONOSYLTRANSFERASE 21	galacturonosyltransferase 21	GALACTURONOSYLTRANSFERASE 21		3	GO:0071555: cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0211800	LOC_Os03g11330.1				GO:0009409 - response to cold, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0010238 - response to proline, GO:0016021 - integral to membrane, GO:0042545 - cell wall modification, GO:0045489 - pectin biosynthetic process, GO:0000139 - Golgi membrane	TO:0000034 - chromium sensitivity, TO:0000303 - cold tolerance	PO:0009049 - inflorescence 
23264	GAUT22	OsGAUT22	GALACTURONOSYLTRANSFERASE 22	galacturonosyltransferase 22	GALACTURONOSYLTRANSFERASE 22		1	GO:0071555: cell wall organization.	 Biochemical character	Os01g0727100	LOC_Os01g52710.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0000139 - Golgi membrane, GO:0045489 - pectin biosynthetic process		
23265	GAUT3	OsGAUT3	GALACTURONOSYLTRANSFERASE 3	galacturonosyltransferase 3	GALACTURONOSYLTRANSFERASE 3		6	GO:0071555: cell wall organization.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0712500	LOC_Os06g49810.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0045489 - pectin biosynthetic process, GO:0000139 - Golgi membrane, GO:0042545 - cell wall modification, GO:0010238 - response to proline	TO:0000034 - chromium sensitivity	
23266	_	OsGAUT4, GAUT4	_	galacturonosyltransferase 4	_		10	GO:0071555: cell wall organization.	 Biochemical character	Os10g0363100	LOC_Os10g21890.2, LOC_Os10g21890.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0000139 - Golgi membrane, GO:0045489 - pectin biosynthetic process		PO:0009049 - inflorescence 
23267	GAUT5	OsGAUT5	GALACTURONOSYLTRANSFERASE 5	galacturonosyltransferase 5	GALACTURONOSYLTRANSFERASE 5		6	GO:0071555: cell wall organization.	 Biochemical character	Os06g0727300	LOC_Os06g51160.1				GO:0045489 - pectin biosynthetic process, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity, GO:0000139 - Golgi membrane		
23268	GAUT8	OsGAUT8	GALACTURONOSYLTRANSFERASE 8	galacturonosyltransferase 8	GALACTURONOSYLTRANSFERASE 8		9		 Biochemical character	Os09g0480400	LOC_Os09g30280.1				GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity		
23269	GAUT9	OsGAUT9	GALACTURONOSYLTRANSFERASE 9	galacturonosyltransferase 9	GALACTURONOSYLTRANSFERASE 9		4	GO:0071555: cell wall organization.	 Biochemical character	Os04g0636100	LOC_Os04g54360.1				GO:0005768 - endosome, GO:0000139 - Golgi membrane, GO:0005802 - trans-Golgi network, GO:0048358 - mucilage pectin biosynthetic process, GO:0000137 - Golgi cis cisterna, GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity		PO:0009049 - inflorescence 
23270	GT8-40	OsGT8-40	GLYCOSYLTRANSFERASE FAMILY 8 MEMBER 40	glycosyltransferase family 8 member 40	GLYCOSYLTRANSFERASE FAMILY 8 MEMBER 40		3		 Biochemical character	Os03g0777600	LOC_Os03g56620.1				GO:0005794 - Golgi apparatus, GO:0016757 - transferase activity, transferring glycosyl groups		
23271	PGSIP-A1	OsPGSIP-A1, OsGUX1, GUX1, OsGUX1L	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A1	plant glycogenin-like starch initiation protein A1, xylan glucuronosyltransferase 1	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A1	OsGUX1AC, OsGUX1ZS	1	GO:1901698: response to nitrogen compound. TO:0020093: nitrogen content. TO:0000993: cellulose content.	 Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0880200	LOC_Os01g65780.4, LOC_Os01g65780.2, LOC_Os01g65780.1, LOC_Os01g65780.3				GO:0048366 - leaf development, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0052386 - cell wall thickening, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0045491 - xylan metabolic process, GO:0045492 - xylan biosynthetic process	TO:0000655 - leaf development trait, TO:0000051 - stem strength, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000696 - starch content, TO:0000300 - glucose content, TO:0006006 - monosaccharide content, TO:0000495 - chlorophyll content, TO:0000011 - nitrogen sensitivity	PO:0025034 - leaf , PO:0001050 - leaf development stage 
23272	PGSIP-A2	OsPGSIP-A2	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A2	plant glycogenin-like starch initiation protein A2	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A2		3		 Biochemical character	Os03g0184300	LOC_Os03g08600.2, LOC_Os03g08600.1				GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0009834 - secondary cell wall biogenesis, GO:0015020 - glucuronosyltransferase activity, GO:0045492 - xylan biosynthetic process		
23273	PGSIP-A3	OsPGSIP-A3	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A3	plant glycogenin-like starch initiation protein A3	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A3		2	CT835413.	 Biochemical character	Os02g0556000	LOC_Os02g35020.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0045492 - xylan biosynthetic process		
23274	PGSIP-B1	OsPGSIP-B1	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN B1	plant glycogenin-like starch initiation protein B1	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN B1		2			Os02g0624400	LOC_Os02g41520.1				GO:0016021 - integral to membrane		
23275	PGSIP-B2	OsPGSIP-B2	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN B2	plant glycogenin-like starch initiation protein B2	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN B2		4			Os04g0517400	LOC_Os04g43700.1				GO:0016021 - integral to membrane		
23276	PGSIP-C2	OsPGSIP-C2	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN C2	plant glycogenin-like starch initiation protein C2	PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN C2		4			Os04g0553800	LOC_Os04g46750.1, LOC_Os04g46750.2, LOC_Os04g46750.3				GO:0006486 - protein amino acid glycosylation, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane		
23277	_		_	UDP-glycosyltransferase 72B3			11		 Biochemical character,  Coloration - Anthocyanin	Os11g0599200	LOC_Os11g38650.1				GO:0008194 - UDP-glycosyltransferase activity, GO:0009813 - flavonoid biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0043231 - intracellular membrane-bounded organelle		
23278	UGT75H1	OsUGT75H1	UDP-GLUCOSYLTRANSFERASE 75H1	chloroplastic crocetin glucosyltransferase, UDP-glucosyltransferase 75H1	UDP-GLUCOSYLTRANSFERASE 75H1		6		 Coloration - Anthocyanin,  Biochemical character	Os06g0593800	LOC_Os06g39330.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008194 - UDP-glycosyltransferase activity, GO:0009813 - flavonoid biosynthetic process		
23279	F3'H2	OsF3'H2, OsCYP71W1, CYP71W1	FLAVONOID 3'-HYDROXYLASE 2	cytochrome P450 71A1, flavonoid 3'-hydroxylase 2	FLAVONOID 3'-HYDROXYLASE 2		2	BGIOSGA008261. OsCYP71W1 in Sahoo et al. 2023.	 Biochemical character,  Coloration - Anthocyanin	Os02g0503100	LOC_Os02g29960.1				GO:0009735 - response to cytokinin stimulus, GO:0009813 - flavonoid biosynthetic process, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding	TO:0000167 - cytokinin sensitivity	PO:0025034 - leaf 
23280	CYP71C8	OsCYP71C8	CYTOCHROME P450 71C8	premnaspirodiene oxygenase, ELL1-like, Cytochrome P450 71C8	CYTOCHROME P450 71C8		9	BGIOSGA030097.	 Biochemical character,  Coloration - Anthocyanin	Os09g0275400	LOC_Os09g10340.1				GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0009813 - flavonoid biosynthetic process, GO:0005506 - iron ion binding		
23281	_		_	UDP-glycosyltransferase 83A1			3	osa-miR1846 target gene.	 Biochemical character,  Coloration - Anthocyanin	Os03g0757000	LOC_Os03g55010.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0008194 - UDP-glycosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0009813 - flavonoid biosynthetic process, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
23282	_		_	UDP-glycosyltransferase 73C6-like			2		 Coloration - Anthocyanin,  Biochemical character	Os02g0207400	LOC_Os02g11700.1				GO:0009813 - flavonoid biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008194 - UDP-glycosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle		
23283	_		_	7-deoxyloganetin glucosyltransferase			4		 Coloration - Anthocyanin,  Biochemical character	Os04g0320700	LOC_Os04g25440.2, LOC_Os04g25440.1				GO:0009813 - flavonoid biosynthetic process, GO:0008194 - UDP-glycosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
23284	_		_	SOUL haem-binding protein domain protein			1	heme-binding-like protein At3g10130, chloroplastic. a gene in rice zygotes with paternal allele-dependent expression.	 Biochemical character,  Coloration - Anthocyanin	Os01g0850900	LOC_Os01g63210.1				GO:0009813 - flavonoid biosynthetic process		
23285	_		_				11		 Coloration - Anthocyanin	Os11g0530650					GO:0009813 - flavonoid biosynthetic process		
23286	_		_				3		 Coloration - Anthocyanin	Os03g0367150					GO:0009813 - flavonoid biosynthetic process		
23287	UGT83A1	OsUGT83A1	UDP-GLUCOSYLTRANSFERASE 83A1	UDP-glucosyltransferase family protein, UDP-glucosyltransferase 83A1	UDP-GLUCOSYLTRANSFERASE 83A1		3	osa-miR1846 target gene.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin	Os03g0757200	LOC_Os03g55030.1, LOC_Os03g55030.2				GO:0009813 - flavonoid biosynthetic process, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0009414 - response to water deprivation, GO:0043231 - intracellular membrane-bounded organelle, GO:0008194 - UDP-glycosyltransferase activity	TO:0000188 - drought sensitivity	
23288	_		_				1		 Coloration - Anthocyanin	Os01g0906450	LOC_Os01g67910.1				GO:0009813 - flavonoid biosynthetic process		
23289	_		_				10		 Coloration - Anthocyanin	Os10g0320201					GO:0009813 - flavonoid biosynthetic process		
23290	BDG	OsBDG	BODYGUARD				10		 Biochemical character	Os10g0532200	LOC_Os10g38860.1				GO:0016021 - integral to membrane, GO:0016787 - hydrolase activity		
23292	TIP3	OsTIP3, OsPHD12, PHD12	TDR INTERACTING PROTEIN 3	Plant homeo-domain finger protein 12, PHD finger protein 12	TDR INTERACTING PROTEIN 3	tip3	3	BGIOSGA009918. A2XLE3 (indica).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os03g0716200	LOC_Os03g50780.1				GO:0046872 - metal ion binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048656 - tapetal layer formation, GO:0048653 - anther development, GO:0009651 - response to salt stress, GO:0010208 - pollen wall assembly	TO:0000437 - male sterility, TO:0000187 - anther color, TO:0006001 - salt tolerance, TO:0000531 - anther length, TO:0000245 - pollen free	PO:0001004 - anther development stage , PO:0020048 - microspore , PO:0025313 - tapetum 
23293	DGD1A	OsDGD1alpha, DGD1alpha, OsDGD1A	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 ALPHA	Digalactosyldiacylglycerol synthase 1 alpha, DGDG synthase 1 alpha	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 ALPHA		2		 Biochemical character	Os02g0539100	LOC_Os02g33580.1				GO:0009707 - chloroplast outer membrane, GO:0019375 - galactolipid biosynthetic process		
23294	DGD1B	OsDGD1beta, DGD1beta, OsDGD1B, OsDGD5, DGD5	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 BETA	Digalactosyldiacylglycerol synthase 1 beta, DGDG synthase 1 beta, digalactosyldiacylglycerol synthase 5	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 BETA		4	OsDGD5 in Adem et al. 2020.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0416900	LOC_Os04g34000.1				GO:0009707 - chloroplast outer membrane, GO:0019375 - galactolipid biosynthetic process, GO:0006794 - phosphorus utilization, GO:0042594 - response to starvation	TO:0000604 - fat and essential oil content, TO:0000102 - phosphorus sensitivity, TO:0000627 - relative phosphorus utilization efficiency	PO:0025034 - leaf 
23295	DGD1D	OsDGD1delta, DGD1delta, OsDGD1D	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 DELTA	Digalactosyldiacylglycerol synthase 1 delta, DGDG synthase 1 delta	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 DELTA		11		 Biochemical character	Os11g0158400	LOC_Os11g05990.1, LOC_Os11g05990.2				GO:0019375 - galactolipid biosynthetic process, GO:0009707 - chloroplast outer membrane		
23296	DGD2A	OsDGD2alpha DGD2alpha, OsDGD2A, OsDGD1, DGD1	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2 ALPHA	Digalactosyldiacylglycerol synthase 2 alpha, DGDG synthase 2 alpha, digalactosyldiacylglycerol synthase 1	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2 ALPHA		3	OsDGD1 in Adem et al. 2020. a pivotal candidate gene for qLTG3a (QTL for Low-temperature germinability). 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0214400	LOC_Os03g11560.1				GO:0019375 - galactolipid biosynthetic process, GO:0009707 - chloroplast outer membrane, GO:0006794 - phosphorus utilization, GO:0042594 - response to starvation	TO:0000604 - fat and essential oil content, TO:0000627 - relative phosphorus utilization efficiency, TO:0000102 - phosphorus sensitivity	PO:0009010 - seed , PO:0025034 - leaf 
23297	DGD2B	OsDGD2beta DGD2beta, OsDGD2B	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2 BETA	Digalactosyldiacylglycerol synthase 2 beta, DGDG synthase 2 beta	DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2 BETA		3		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0268300	LOC_Os03g16140.4, LOC_Os03g16140.3, LOC_Os03g16140.2, LOC_Os03g16140.1				GO:0048653 - anther development, GO:0009707 - chloroplast outer membrane, GO:0019375 - galactolipid biosynthetic process, GO:0009555 - pollen development	TO:0000531 - anther length, TO:0000437 - male sterility, TO:0000214 - anther shape, TO:0000187 - anther color	PO:0001004 - anther development stage , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009066 - anther , PO:0001007 - pollen development stage 
23298	SFL1	OsSFL1	SAP30 FUNCTIONAL LIKE 1	SAP30 Functional Like 1	SAP30 FUNCTIONAL LIKE 1	ossfl1, ossfl1-T	4	homolog of Sin3-associated polypeptide 30.	 Reproductive organ - Heading date	Os04g0166600	LOC_Os04g08450.3, LOC_Os04g08450.2, LOC_Os04g08450.1				GO:0004407 - histone deacetylase activity, GO:0000118 - histone deacetylase complex, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000137 - days to heading, TO:0002616 - flowering time	
23299	GBP	OsGBP	GBSS-BINDING PROTEIN		GBSS-BINDING PROTEIN	osgbp, osgbp-1, osgbp-2	2	CBM48 domain-containing protein.	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity	Os02g0135900	LOC_Os02g04330.1, LOC_Os02g04330.2				GO:0009536 - plastid, GO:0009507 - chloroplast, GO:0019252 - starch biosynthetic process	TO:0000696 - starch content, TO:0000162 - seed quality, TO:0000097 - amylopectin content, TO:0000396 - grain yield, TO:0000196 - amylose content, TO:0000266 - chalky endosperm, TO:0000449 - grain yield per plant, TO:0000207 - plant height, TO:0000590 - grain weight	PO:0009010 - seed , PO:0025034 - leaf 
23300	EF-CD	Ef-cd, OsEf-cd	EARLY FLOWERING-COMPLETELY DOMINANT	Early flowering-completely dominant		ef-cd-1, ef-cd-2	3	long non-coding RNA (lncRNA) antisense transcript overlapping the OsSOC1 gene. GO:2000028: regulation of photoperiodism, flowering.	 Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os03g0122500					GO:0021700 - developmental maturation, GO:0045848 - positive regulation of nitrogen utilization, GO:0048573 - photoperiodism, flowering	TO:0001027 - net photosynthetic rate, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000469 - days to maturity	
23301	NAL8	OsNAL8	NARROW LEAF 8	narrow leaf 8		nal8	7	a prohibitin complex 2 alpha subunit. PO:0025570: vascular leaf development stage.	 Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn	Os07g0262200	LOC_Os07g15880.1				GO:0048366 - leaf development, GO:0033484 - nitric oxide homeostasis, GO:0009755 - hormone-mediated signaling, GO:0009658 - chloroplast organization, GO:0043457 - regulation of cellular respiration, GO:0010109 - regulation of photosynthesis, GO:0010229 - inflorescence development, GO:0007005 - mitochondrion organization, GO:0005743 - mitochondrial inner membrane, GO:0051302 - regulation of cell division	TO:0000370 - leaf width, TO:0002660 - cytokinin content, TO:0000456 - spikelet number, TO:0000621 - inflorescence development trait	PO:0001083 - inflorescence development stage 
23302	NDA	OsNDA, NDB3, OsNDB3, OsNDB2, NDB2	NAD(P) H DEHYDROGENASE A	NAD(P) H dehydrogenase A, NADH dehydrogenase B3	NAD(P) H DEHYDROGENASE A		5	an internal NADH dehydrogenase. NDB3 in Zheng et al. 2021. OsNDB2 in Wang et al. 2021, Toda et al. 2012.	 Biochemical character	Os05g0331200	LOC_Os05g26660.1				GO:0005777 - peroxisome, GO:0016491 - oxidoreductase activity, GO:0006116 - NADH oxidation, GO:0003954 - NADH dehydrogenase activity, GO:0005743 - mitochondrial inner membrane, GO:0005509 - calcium ion binding		
23303	NDB3	OsNDB3	NAD(P) H DEHYDROGENASE B3	NAD(P) H dehydrogenase B3, NADH dehydrogenase B3	NAD(P) H DEHYDROGENASE B3		8	an internal NADH dehydrogenase.	 Biochemical character	Os08g0141400	LOC_Os08g04630.1				GO:0003954 - NADH dehydrogenase activity, GO:0016491 - oxidoreductase activity, GO:0005509 - calcium ion binding, GO:0005739 - mitochondrion, GO:0006116 - NADH oxidation, GO:0005777 - peroxisome		
23304	GFR1	OsGFR1	GRAIN-FILLING RATE1	GRAIN-FILLING RATE 1		GFR1Ludao, GFR1C-bao, GFR1Nipponbare	10	GO:0080152: regulation of reductive pentose-phosphate cycle.	 Coloration - Chlorophyll,  Character as QTL - Yield and productivity	Os10g0508100	LOC_Os10g36400.1				GO:0019253 - reductive pentose-phosphate cycle, GO:0005856 - cytoskeleton, GO:0009639 - response to red or far red light, GO:0009959 - negative gravitropism, GO:0016020 - membrane, GO:0005777 - peroxisome	TO:0000328 - sucrose content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0006005 - fructose content, TO:0000396 - grain yield, TO:0000447 - filled grain number, TO:0000300 - glucose content	
23305	LBD1-8	OsLBD1-8	LBD-CONTAINING PROTEIN 1-8	lateral organ boundary domain-containing protein 1-8, LBD-containing protein 1-8	LBD-CONTAINING PROTEIN 1-8		1	a target of ARF19.	 Vegetative organ - Root	Os01g0825000	LOC_Os01g60960.1				GO:0010618 - aerenchyma formation, GO:0010311 - lateral root formation		PO:0000258 - root cortex , PO:0005029 - root primordium 
23306	LBD5-3	OsLBD5-3	LBD-CONTAINING PROTEIN 5-3	lateral organ boundary domain-containing protein 5-3, LBD-containing protein 5-3	LBD-CONTAINING PROTEIN 5-3		5	the most likely candidate gene for qRN5a (QTL for root number 5a). GO:2000280: regulation of root development. GO:0035864: response to potassium ion. GO:1901698: response to nitrogen compound.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os05g0346800	LOC_Os05g27980.1				GO:0006995 - cellular response to nitrogen starvation, GO:0048364 - root development, GO:0051365 - cellular response to potassium ion starvation, GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity, TO:0000008 - potassium sensitivity, TO:0000084 - root number, TO:0000656 - root development trait	PO:0009005 - root , PO:0007520 - root development stage 
23307	IQD14	OsIQD14	IQ67-DOMAIN14	IQ67-DOMAIN 14, IQD family protein 14	IQ67-DOMAIN14	iqd14-1, iqd14-2, iqd14-3, iqd14-4, iqd14-5, iqd14-C	8	TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os08g0115200	LOC_Os08g02250.1				GO:0010229 - inflorescence development, GO:0048316 - seed development, GO:0070507 - regulation of microtubule cytoskeleton organization, GO:0005874 - microtubule, GO:0051592 - response to calcium ion, GO:0008017 - microtubule binding, GO:0009733 - response to auxin stimulus	TO:0000149 - seed width, TO:0000146 - seed length, TO:0000734 - grain length, TO:0000397 - grain size, TO:0000592 - 1000-dehulled grain weight, TO:0002730 - grain shape, TO:0000163 - auxin sensitivity, TO:0000621 - inflorescence development trait, TO:0000396 - grain yield	PO:0009051 - spikelet , PO:0009049 - inflorescence , PO:0006000 - caryopsis hull , PO:0009066 - anther , PO:0001083 - inflorescence development stage 
23308	CYP71D8L	OsCYP71D8L	CYTOCHROME P450 71D8L	Cytochrome P450 71D8L	CYTOCHROME P450 71D8L	cyp71d8l	2	GO:1901002: positive regulation of response to salt stress. GO:1902584: positive regulation of response to water deprivation.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os02g0184900	LOC_Os02g09220.1				GO:0048364 - root development, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009690 - cytokinin metabolic process, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0010336 - gibberellic acid homeostasis	TO:0000040 - panicle length, TO:0000634 - node number, TO:0002660 - cytokinin content, TO:0002675 - gibberellic acid content, TO:0000145 - internode length, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content, TO:0000656 - root development trait, TO:0000447 - filled grain number, TO:0000207 - plant height	PO:0007520 - root development stage 
23309	SLC2	OsSLC2, OsACO, ACO	SLENDER AND CRINKLY LEAF 2			slc2, slc2-27, slc2-61, slc2-62, osaco	9	Q651B6 . PO:0025570: vascular leaf development stage. TO:0000748: leaf morphology trait. TO:0000905: seed yield trait.	 Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Physiological traits - Dormancy,  Seed,  Character as QTL - Germination,  Biochemical character	Os09g0570800 	LOC_Os09g39720.1				GO:0048364 - root development, GO:0046872 - metal ion binding, GO:0051213 - dioxygenase activity, GO:0048366 - leaf development, GO:0009697 - salicylic acid biosynthetic process, GO:0009845 - seed germination, GO:0048316 - seed development, GO:0048367 - shoot development	TO:0000227 - root length, TO:0000207 - plant height, TO:0000655 - leaf development trait, TO:0000241 - leaf number, TO:0000370 - leaf width	PO:0025527 - shoot system development stage , PO:0007045 - coleoptile emergence stage , PO:0001170 - seed development stage , PO:0001031 - 4 root elongation stage , PO:0007057 - 0 seed germination stage 
23310	TCM12	OsTCM12, iPGAM, OsiPGAM	THERMO-SENSITIVE CHLOROSIS MUTANT 12	"thermo-sensitive chlorosis mutant 12, \"2, 3-bisphosphoglycerate-independent phosphoglycerate mutase\""		tcm12	12	TO:0006060: leaf chlorosis.	 Biochemical character,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os12g0536000	LOC_Os12g35040.1				GO:0015979 - photosynthesis, GO:0005634 - nucleus, GO:0016020 - membrane, GO:0009409 - response to cold, GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, GO:0015995 - chlorophyll biosynthetic process, GO:0009658 - chloroplast organization	TO:0000496 - carotenoid content, TO:0000326 - leaf color, TO:0000303 - cold tolerance, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	
23311	SE14	JMJ701, Os JMJ701, Se14	PHOTOSENSITIVITY 14	Jumonji 701, Photoperiod-sensitivity-14		se14	3	Q10RP4. JmjC domain containing protein. JMJC protein.  PO:0030123: panicle inflorescence.	 Reproductive organ - Heading date,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os03g0151300	LOC_Os03g05690.1, LOC_Os03g05680.1				GO:0035097 - histone methyltransferase complex, GO:0009908 - flower development, GO:0045814 - negative regulation of gene expression, epigenetic, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0006338 - chromatin remodeling, GO:0003676 - nucleic acid binding, GO:0010114 - response to red light, GO:0046872 - metal ion binding, GO:0034647 - histone demethylase activity (H3-trimethyl-K4 specific), GO:0032452 - histone demethylase activity, GO:0051213 - dioxygenase activity	TO:0000397 - grain size, TO:0000137 - days to heading, TO:0000158 - red light sensitivity	PO:0009047 - stem , PO:0020103 - flag leaf 
23312	DGK2	OsDGK2	DIACYLGLYCEROL KINASE 2	Diacylglycerol kinase 2	DIACYLGLYCEROL KINASE 2		8			Os08g0178700	LOC_Os08g08110.1				GO:0003951 - NAD+ kinase activity, GO:0004143 - diacylglycerol kinase activity, GO:0006952 - defense response, GO:0005524 - ATP binding, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway		
23313	DGK4	OsDGK4	DIACYLGLYCEROL KINASE 4	Diacylglycerol kinase 4	DIACYLGLYCEROL KINASE 4		12	GO:0035556: intracellular signal transduction.		Os12g0576900	LOC_Os12g38780.1, LOC_Os12g38780.2				GO:0016021 - integral to membrane, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, GO:0003951 - NAD+ kinase activity, GO:0004143 - diacylglycerol kinase activity, GO:0005524 - ATP binding		
23314	DGK5	OsDGK5	DIACYLGLYCEROL KINASE 5	Diacylglycerol kinase 5	DIACYLGLYCEROL KINASE 5		3	GO:0035556: intracellular signal transduction.		Os03g0425300	LOC_Os03g31180.1, LOC_Os03g31180.2, LOC_Os03g31180.3				GO:0003951 - NAD+ kinase activity, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0004143 - diacylglycerol kinase activity, GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway		
23315	DGK7	OsDGK7	DIACYLGLYCEROL KINASE 7	Diacylglycerol kinase 7	DIACYLGLYCEROL KINASE 7		1			Os01g0783200	LOC_Os01g57420.2, LOC_Os01g57420.1				GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, GO:0003951 - NAD+ kinase activity, GO:0005524 - ATP binding, GO:0004143 - diacylglycerol kinase activity, GO:0006952 - defense response		PO:0009005 - root 
23316	DGK8	OsDGK8	DIACYLGLYCEROL KINASE 8	Diacylglycerol kinase 8	DIACYLGLYCEROL KINASE 8		12			Os12g0224000	LOC_Os12g12260.1, LOC_Os12g12260.2				GO:0007205 - activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, GO:0004143 - diacylglycerol kinase activity		PO:0009005 - root 
23317	GXMT1	OsGXMT1	GLUCURONOXYLAN 4-O-METHYLTRANSFERASE 1	glucuronoxylan 4-O-methyltransferase 1	GLUCURONOXYLAN 4-O-METHYLTRANSFERASE 1		12		 Biochemical character	Os12g0204500	LOC_Os12g10320.1				GO:0009834 - secondary cell wall biogenesis, GO:0045492 - xylan biosynthetic process, GO:0005794 - Golgi apparatus, GO:0045491 - xylan metabolic process		
23318	DRP-RP13 	OsDRP-RP13	DISEASE RESISTANCE PROTEIN RPP13	disease resistance protein RPP13	DISEASE RESISTANCE PROTEIN RPP13		11			Os11g0673900	LOC_Os11g44970.1				GO:0043531 - ADP binding		
23319	NBIP1	OsNBIP1, OsRING163, RING163	NRT1.1B INTERACTING PROTEIN 1	NRT1.1B interacting protein 1, RING-type E3 ubiquitin ligase 163	NRT1.1B INTERACTING PROTEIN 1		1	an E3 ubiquitin ligase.		Os01g0755700	LOC_Os01g55110.1				GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding		
23321	PCS10	OsPCS10	PHYTOCHELATIN SYNTHASE 10	Phytochelatin synthase 10	PHYTOCHELATIN SYNTHASE 10		4	Q7XR91. PO:0030123: panicle inflorescence.		Os04g0540300	LOC_Os04g45700.1				GO:0010215 - cellulose microfibril organization, GO:0009832 - plant-type cell wall biogenesis, GO:0052324 - cell wall cellulose biosynthetic process, GO:0009664 - plant-type cell wall organization, GO:0046658 - anchored to plasma membrane		PO:0025034 - leaf 
23323	PCS9	OsPCS9	PHYTOCHELATIN SYNTHASE 9	Phytochelatin synthase 9	PHYTOCHELATIN SYNTHASE 9		5	AAV32132. OsPCS1 (Os05g0415200) and OsPCS9 are located in the same chromosome and are more closely related to each other (Shen et al. 2010).							GO:0046872 - metal ion binding, GO:0010038 - response to metal ion, GO:0046938 - phytochelatin biosynthetic process, GO:0016756 - glutathione gamma-glutamylcysteinyltransferase activity		PO:0025034 - leaf 
23324	SQD1	OsSQD1	SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 1	sulfoquinovosyl transferase-like protein 1, Sulfoquinovosyldiacylglycerol synthase 1, Sulfoquinovosyl diacylglycerol synthase 1	SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 1	sqd1, ossqd1	5	TO:0006045: phosphorus concentration. TO:0020102: phosphate content. GO:0090567: reproductive shoot system development. TO:0020103: adventitious root length.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os05g0387200	LOC_Os05g32140.1				GO:0016036 - cellular response to phosphate starvation, GO:0008146 - sulfotransferase activity, GO:0010438 - cellular response to sulfur starvation, GO:0015979 - photosynthesis, GO:0042594 - response to starvation, GO:0009247 - glycolipid biosynthetic process, GO:0050662 - coenzyme binding, GO:0003824 - catalytic activity, GO:0009507 - chloroplast, GO:0008270 - zinc ion binding, GO:0055088 - lipid homeostasis, GO:0051365 - cellular response to potassium ion starvation, GO:0055062 - phosphate ion homeostasis, GO:0055091 - phospholipid homeostasis, GO:0006664 - glycolipid metabolic process, GO:0048364 - root development, GO:0010966 - regulation of phosphate transport, GO:0019220 - regulation of phosphate metabolic process, GO:0042762 - regulation of sulfur metabolic process, GO:0048527 - lateral root development, GO:0048830 - adventitious root development, GO:0080022 - primary root development	TO:0000511 - phosphorus uptake, TO:0000656 - root development trait, TO:0000227 - root length, TO:0001012 - lateral root length, TO:0001013 - lateral root number, TO:0000604 - fat and essential oil content, TO:0001016 - relative chlorophyll content, TO:0000102 - phosphorus sensitivity, TO:0000316 - photosynthetic ability, TO:0000008 - potassium sensitivity, TO:0000007 - sulfur sensitivity	PO:0005352 - xylem , PO:0005059 - root endodermis , PO:0005417 - phloem , PO:0000258 - root cortex , PO:0025181 - root elongation zone , PO:0025034 - leaf , PO:0006085 - root meristem , PO:0000016 - lateral root primordium , PO:0007520 - root development stage , PO:0020121 - lateral root , PO:0005421 - parenchyma 
23325	PIBP1	OsPIBP1	PIGMR-INTERACTING AND BLAST RESISTANCE PROTEIN 1	PigmR-INTERACTING and BLAST RESISTANCE PROTEIN 1	PIGMR-INTERACTING AND BLAST RESISTANCE PROTEIN 1		3	a RRM class of transcription factor.	 Tolerance and resistance - Disease resistance	Os03g0713600	LOC_Os03g50560.1, LOC_Os03g50560.2, LOC_Os03g50560.3				GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23326	_		_	PIBP1 Homolog			6		 Tolerance and resistance - Disease resistance	Os06g0112400	LOC_Os06g02240.1				GO:0003723 - RNA binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23327	TARL2	OsTARL2	TRYPTOPHAN AMINOTRANSFERASE RELATED-LIKE 2		TRYPTOPHAN AMINOTRANSFERASE RELATED-LIKE 2		1	TSG1 homolog.	 Biochemical character	Os01g0717400	LOC_Os01g51980.1				GO:0005783 - endoplasmic reticulum, GO:0016846 - carbon-sulfur lyase activity		
23328	ZFP350	OsZFP350	ZINC FINGER PROTEIN 350	zinc finger protein ZFP350	ZINC FINGER PROTEIN 350		5		 Other,  Tolerance and resistance - Stress tolerance	Os05g0286100	LOC_Os05g20930.1				GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0009408 - response to heat, GO:0003676 - nucleic acid binding, GO:0009651 - response to salt stress	TO:0000227 - root length, TO:0001006 - adventitious root number, TO:0000430 - germination rate, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0001013 - lateral root number	PO:0007520 - root development stage 
23329	PP2A-B'IOTA	OsPP2A-B'iota, OsB'iota, B'iota-PP2A	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' IOTA	protein phosphatase 2A B'iota subunit, PP2A regulatory subunit B'iota	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' IOTA		5	GO:0072542: protein phosphatase activator activity.		Os05g0178400	LOC_Os05g08560.1				GO:0000159 - protein phosphatase type 2A complex, GO:0005634 - nucleus, GO:0006470 - protein amino acid dephosphorylation, GO:0031952 - regulation of protein amino acid autophosphorylation, GO:0007165 - signal transduction, GO:0005829 - cytosol		
23330	PP2A-B'GAMMA	OsPP2A-B'gamma, OsB'gamma	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' GAMMA	protein phosphatase 2A B'gamma subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' GAMMA		7	GO:0072542: protein phosphatase activator activity.		Os07g0274800	LOC_Os07g17360.1, LOC_Os07g17360.2				GO:0006470 - protein amino acid dephosphorylation, GO:0031952 - regulation of protein amino acid autophosphorylation, GO:0000159 - protein phosphatase type 2A complex, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0007165 - signal transduction		
23331	PP2A-B'BETA	OsPP2A-B'beta, OsB'beta	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' BETA	protein phosphatase 2A B'beta subunit	PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' BETA		3	GO:0072542: protein phosphatase activator activity.		Os03g0681800	LOC_Os03g47790.3, LOC_Os03g47790.1				GO:0031952 - regulation of protein amino acid autophosphorylation, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0007165 - signal transduction, GO:0000159 - protein phosphatase type 2A complex, GO:0006470 - protein amino acid dephosphorylation		
23332	IPPI2	OsIPPI2	ISOPENTENYL DIPHOSPHATE ISOMERASE 2	IPP isomerase 2, isopentenyl diphosphate isomerase 2	ISOPENTENYL DIPHOSPHATE ISOMERASE 2		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0413400	LOC_Os05g34180.1				GO:0004452 - isopentenyl-diphosphate delta-isomerase activity, GO:0005783 - endoplasmic reticulum, GO:0005777 - peroxisome, GO:0005739 - mitochondrion, GO:0009416 - response to light stimulus, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0009240 - isopentenyl diphosphate biosynthetic process, GO:0009536 - plastid, GO:0016787 - hydrolase activity	TO:0000075 - light sensitivity	
23333	HDR2	OsHDR2, OsIspH2, IspH2	HMBPP REDUCTASE 2	HMBPP reductase 2, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2, isoprenoid synthesis H2	HMBPP REDUCTASE 2		3		 Biochemical character	Os03g0732000	LOC_Os03g52180.1				GO:0050992 - dimethylallyl diphosphate biosynthetic process, GO:0046872 - metal ion binding, GO:0019288 - isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity		PO:0009005 - root , PO:0009010 - seed 
23334	C2DP64	OsGAP, GAP, OsC2DP64	C2 DOMAIN-CONTAINING PROTEIN 64	GTPase activating protein, C2 Domain-Containing Protein 64	C2 DOMAIN-CONTAINING PROTEIN 64	gap-24	7		 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os07g0500300	LOC_Os07g31720.1				GO:0007623 - circadian rhythm, GO:0009416 - response to light stimulus, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009845 - seed germination, GO:0005886 - plasma membrane, GO:0005634 - nucleus	TO:0000075 - light sensitivity, TO:0000615 - abscisic acid sensitivity	
23335	CASP1	OsCASP1	CASPARIAN STRIP DOMAIN PROTEIN 1	Casparian strip domain protein 1, Casparian strip membrane domain protein 1	CASPARIAN STRIP DOMAIN PROTEIN 1	oscasp1, casp1-1, oscasp1-1, oscasp1-2, Oscasp1, Oscasp1-1, Oscasp1-3, Oscasp1-4	4	Q7XPU9. TO:0020096: mineral and ion transport trait. TO:0006047: calcium content trait. TO:0020090: zinc content trait. TO:0020089: iron content trait. TO:0006059: cadmium content trait. TO:0006054: arsenic content trait. TO:0001048: silicon content trait. TO:1000055: shoot system calcium content. TO:1000029: root system calcium content. GO:0071668: plant-type cell wall assembly. GO:0098771: inorganic ion homeostasis. TO:0006048: manganese concentration. GO:1990641: response to iron ion starvation.	 Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os04g0684300	LOC_Os04g58760.1				GO:0016021 - integral to membrane, GO:0042545 - cell wall modification, GO:0007043 - cell-cell junction assembly, GO:0009808 - lignin metabolic process, GO:0051924 - regulation of calcium ion transport, GO:0051592 - response to calcium ion, GO:0009664 - plant-type cell wall organization, GO:0009651 - response to salt stress, GO:0031667 - response to nutrient levels, GO:0070726 - cell wall assembly, GO:0010345 - suberin biosynthetic process, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0010039 - response to iron ion, GO:0010350 - cellular response to magnesium starvation, GO:0010044 - response to aluminum ion, GO:0010150 - leaf senescence, GO:0010447 - response to acidity, GO:0046686 - response to cadmium ion, GO:0045927 - positive regulation of growth, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0048226 - Casparian strip, GO:0005886 - plasma membrane	TO:0000010 - magnesium sensitivity, TO:0000006 - calcium sensitivity, TO:0000731 - lignin content, TO:0000526 - sodium concentration, TO:0000513 - potassium concentration, TO:0000224 - iron sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000008 - potassium sensitivity, TO:0000354 - aluminum sensitivity, TO:0000084 - root number, TO:0000516 - relative root length, TO:0000249 - leaf senescence, TO:0000479 - acid sensitivity, TO:0000136 - relative water content, TO:0006001 - salt tolerance, TO:0000480 - nutrient sensitivity, TO:0000085 - leaf rolling, TO:0000346 - tiller number, TO:0000145 - internode length, TO:0000485 - sterility related trait	PO:0020124 - root stele , PO:0009005 - root , PO:0025181 - root elongation zone , PO:0000252 - endodermis , PO:0000027 - lateral root tip , PO:0000077 - sclerenchyma cell 
23336	CASP2	OsCASP2	CASPARIAN STRIP DOMAIN PROTEIN 2	Casparian strip domain protein 2	CASPARIAN STRIP DOMAIN PROTEIN 2	oscasp2	8	Q6Z1Y7.		Os08g0101900	LOC_Os08g01160.1				GO:0016021 - integral to membrane, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0048226 - Casparian strip, GO:0042545 - cell wall modification, GO:0005886 - plasma membrane, GO:0007043 - cell-cell junction assembly		PO:0009005 - root 
23337	CASP3	OsCASP3	CASPARIAN STRIP DOMAIN PROTEIN 3	Casparian strip domain protein 3	CASPARIAN STRIP DOMAIN PROTEIN 3	oscasp3	6	Q67X40. CT836221.		Os06g0231050	LOC_Os06g12500.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0042545 - cell wall modification		PO:0009005 - root 
23338	CASP4	OsCASP4	CASPARIAN STRIP DOMAIN PROTEIN 4	Casparian strip domain protein 4	CASPARIAN STRIP DOMAIN PROTEIN 4	oscasp4	2	Q6Z2U5.		Os02g0743900 	LOC_Os02g51010.1				GO:0042545 - cell wall modification, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0051539 - 4 iron, 4 sulfur cluster binding		
23339	CASP5	OsCASP5	CASPARIAN STRIP DOMAIN PROTEIN 5	Casparian strip domain protein 5	CASPARIAN STRIP DOMAIN PROTEIN 5	oscasp5	4	Q7XUV7.		Os04g0460400  	LOC_Os04g38690.1				GO:0005886 - plasma membrane, GO:0042545 - cell wall modification, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0016021 - integral to membrane		PO:0009005 - root 
23340	WSL8	OsWSL8, OsdNK1, dNK1	WHITE STRIPE LEAF 8	white stripe leaf 8, deoxyribonucleoside kinase 1	DEOXYRIBONUCLEOSIDE KINASE 1	wsl8	5	TO:0006060: leaf chlorosis.	 Coloration - Chlorophyll,  Vegetative organ - Leaf	Os05g0430200	LOC_Os05g35520.3, LOC_Os05g35520.2, LOC_Os05g35520.1				GO:0019136 - deoxynucleoside kinase activity, GO:0005737 - cytoplasm, GO:0043173 - nucleotide salvage, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content	
23341	DNK2	OsdNK2, dNK2	DEOXYRIBONUCLEOSIDE KINASE 2	deoxyribonucleoside kinase 2	DEOXYRIBONUCLEOSIDE KINASE 2		1	a WSL8 homolog.		Os01g0874100	LOC_Os01g65350.1, LOC_Os01g65350.2						
23342	DPW3	OsDPW3	DEFECTIVE POLLEN WALL 3	defective pollen wall 3		dpw3	2	TO:1000022: anther morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0100700	LOC_Os02g01070.1				GO:0009555 - pollen development, GO:0048364 - root development, GO:0048653 - anther development, GO:0009826 - unidimensional cell growth, GO:0010152 - pollen maturation, GO:0005783 - endoplasmic reticulum, GO:0010208 - pollen wall assembly, GO:0052543 - callose deposition in cell wall, GO:0005794 - Golgi apparatus, GO:0005774 - vacuolar membrane, GO:0016021 - integral to membrane, GO:0010584 - pollen exine formation, GO:0005886 - plasma membrane	TO:0000218 - pollen abortion type, TO:0000437 - male sterility, TO:0000187 - anther color, TO:0000531 - anther length	PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
23343	PIP5K1	OsPIP5K1	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1	phosphatidylinositol-4-phosphate 5-kinase 1	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1	ospip5k1-1, ospip5k1-2, ospip5k1-3, ospip5k1-4	3	PO:0030123: panicle inflorescence.	 Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Culm	Os03g0705300	LOC_Os03g49800.1				GO:0016307 - phosphatidylinositol phosphate kinase activity, GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity, GO:0005524 - ATP binding, GO:0019932 - second-messenger-mediated signaling, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0010229 - inflorescence development, GO:0040008 - regulation of growth	TO:0000077 - shoot anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0000207 - plant height, TO:0006036 - stem elongation, TO:0000145 - internode length	PO:0000017 - vascular leaf primordium , PO:0001083 - inflorescence development stage , PO:0007089 - stem elongation stage , PO:0000034 - vascular system , PO:0006327 - spikelet meristem 
23344	DSL1	OsDSL1, OsHDA711, HDA711, OsHDA9, HDA9	DWARF WITH SLENDER LEAF1	dwarf with slender leaf 1, Histone Deacetylase 711	HISTONE DEACETYLASE 711	dsl1	4	GO:0080186: developmental vegetative growth. TO:0020109: vascular bundle development trait. RPD/HDA1 family. OsHDA9 in Niu et al. 2022. BGIOSGA016344 (indica).	 Vegetative organ - Leaf,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Other,  Biochemical character	Os04g0409600	LOC_Os04g33480.1				GO:0070933 - histone H4 deacetylation, GO:0004407 - histone deacetylase activity, GO:0048608 - reproductive structure development, GO:0010229 - inflorescence development, GO:0051781 - positive regulation of cell division, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009733 - response to auxin stimulus, GO:0009408 - response to heat, GO:0046872 - metal ion binding, GO:0070932 - histone H3 deacetylation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0000118 - histone deacetylase complex	TO:0000145 - internode length, TO:0000621 - inflorescence development trait, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000472 - vascular bundle number	PO:0001083 - inflorescence development stage 
23345	RIP1.1	OsRIP1, RIP1, OsjRIP1.1	RIBOSOME-INACTIVATING PROTEIN 1.1	ribosome-inactivating protein 1, Ribosome-inactivating protein 1.1, type 1 ribosome-inactivating protein	RIBOSOME-INACTIVATING PROTEIN 1.1		1	GO:0090729: toxin activity. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:1905156: negative regulation of photosynthesis. GO:1900055: regulation of leaf senescence.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Insect resistance	Os01g0160800	LOC_Os01g06740.1				GO:0002213 - defense response to insect, GO:0080036 - regulation of cytokinin mediated signaling, GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0009740 - gibberellic acid mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0051726 - regulation of cell cycle, GO:0010150 - leaf senescence, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0030598 - rRNA N-glycosylase activity, GO:0006952 - defense response, GO:0017148 - negative regulation of translation, GO:0009405 - pathogenesis, GO:0010109 - regulation of photosynthesis, GO:0000154 - rRNA modification, GO:0045007 - depurination, GO:0005829 - cytosol, GO:0005634 - nucleus	TO:0000019 - seedling height, TO:0000424 - brown planthopper resistance, TO:0000249 - leaf senescence, TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000227 - root length, TO:0000576 - stem length, TO:0000457 - total biomass yield, TO:0000207 - plant height	
23346	PSBQ	PsbQ, OsPsbQ, psbQ, PsbQ-1	PHOTOSYSTEM II SUBUNIT	PSII subunit PsbQ, photosystem II subunit PsbQ			7	Q0D5P8.		Os07g0544800	LOC_Os07g36080.1, LOC_Os07g36080.2, LOC_Os07g36080.3				GO:0009654 - oxygen evolving complex, GO:0009535 - chloroplast thylakoid membrane, GO:0009767 - photosynthetic electron transport chain, GO:0019898 - extrinsic to membrane, GO:0009507 - chloroplast, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0005509 - calcium ion binding		
23347	_	OsTHI10, THI10, OsTHION10, THION10	_	Thionin 10	_		6				LOC_Os06g32290.1						
23348	_	OsTHI11, THI11, OsTHION11, THION11	_	Thionin 11	_		6				LOC_Os06g32320.1						
23349	THI18	OsTHI18, OsTHION18, THION18	THIONIN 18	Thionin 18	THIONIN 18		1			Os01g0594500	LOC_Os01g41140.1						
23350	THI19	OsTHI19, OsTHION19, THION19	THIONIN 19	Thionin 19	THIONIN 19		1	CT834801.		Os01g0595001	LOC_Os01g41180.1						
23351	THI22	OsTHI22, OsTHION22, THION22	THIONIN 22	Thionin 22	THIONIN 22		2			Os02g0130700	LOC_Os02g03800.1				GO:0048229 - gametophyte development, GO:0009554 - megasporogenesis		PO:0028003 - gametophyte development stage , PO:0020003 - plant ovule 
23352	THI23	OsTHI23, OsTHION23, THION23	THIONIN 23	Thionin 23	THIONIN 23		2			Os02g0134700	LOC_Os02g04190.1, LOC_Os02g04190.2, LOC_Os02g04190.3				GO:0048229 - gametophyte development, GO:0009554 - megasporogenesis		PO:0028003 - gametophyte development stage , PO:0020003 - plant ovule 
23353	THI24	OsTHI24, OsTHION24, THION24	THIONIN 24	Thionin 24	THIONIN 24		2			Os02g0127100	LOC_Os02g03480.1, LOC_Os02g03480.2						
23354	THI25	OsTHI25, OsTHION25, THION25	THIONIN 25	Thionin 25	THIONIN 25		2			Os02g0127500	LOC_Os02g03520.1						
23355	THI27	OsTHI27, OsTHION27, THION27	THIONIN 27	Thionin 27	THIONIN 27		1			Os01g0594900	LOC_Os01g41170.1						
23356	THI33	OsTHI33, OsTHION33, THION33	THIONIN 33	Thionin 33	THIONIN 33		9			Os09g0283900	LOC_Os09g11200.1						
23357	THI35	OsTHI35, OsTHION35, THION35	THIONIN 35	Thionin 35	THIONIN 35		9			Os09g0284000	LOC_Os09g11210.1						
23358	THI40	OsTHI40, OsTHION40, THION40	THIONIN 40	Thionin 40	THIONIN 40		12			Os12g0455300	LOC_Os12g26980.1						
23359	THI44	OsTHI44, OsTHION44, THION44	THIONIN 44	Thionin 44	THIONIN 44		1			Os01g0709300	LOC_Os01g51270.1						
23360	THI13	OsTHI13, OsTHION13, THION13	THIONIN 13	Thionin 13	THIONIN 13			'no locus number assigned' in Boonpa et al. 2019.									
23361	THI42	OsTHI42, OsTHION42, THION42	THIONIN 42	Thionin 42	THIONIN 42			'no locus number assigned' in Boonpa et al. 2019.									
23362	THI43	OsTHI43, OsTHION43, THION43	THIONIN 43	Thionin 43	THIONIN 43			'predicted as pseudogene' in Boonpa et al. 2019.									
23363	THI17	OsTHI17, OsTHION17, THION17	THIONIN 17	Thionin 17	THIONIN 17			'predicted as pseudogene' in Boonpa et al. 2019.									
23364	ABA3	OsABA3, OsMoCo, MoCo	ABA DEFICIENT 3				6	Q655R6. GO:0102867: molybdenum cofactor sulfurtransferase activity.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0670000	LOC_Os06g45860.1				GO:0008265 - Mo-molybdopterin cofactor sulfurase activity, GO:0030151 - molybdenum ion binding, GO:0016829 - lyase activity, GO:0006777 - Mo-molybdopterin cofactor biosynthetic process, GO:0030170 - pyridoxal phosphate binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0002667 - abscisic acid content	
23365	PHB2	OsPHB2	PROHIBITIN 2	prohibitin-2	PROHIBITIN 2		3			Os03g0841700	LOC_Os03g62490.1				GO:0005743 - mitochondrial inner membrane		
23368	_		_				9	TO:0001109: grain color trait.	 Seed - Morphological traits,  Coloration,  Biochemical character	Os09g0455500	LOC_Os09g28230.1				GO:0009962 - regulation of flavonoid biosynthetic process, GO:0016787 - hydrolase activity, GO:0009056 - catabolic process	TO:0000290 - flavonoid content	
23369	_		PROTEINASE INHIBITOR I20	Proteinase inhibitor I20	PROTEINASE INHIBITOR I20		3		 Biochemical character	Os03g0734300	LOC_Os03g52390.1				GO:0004867 - serine-type endopeptidase inhibitor activity		
23370	_		_	Cytochrome P450 family protein			1	a gene in rice zygotes with paternal allele-dependent expression.	 Biochemical character	Os01g0211200	LOC_Os01g11300.1				GO:0055114 - oxidation reduction, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016125 - sterol metabolic process		
23371	_		_	Protein of unknown function DUF572 family			1	a gene in rice zygotes with paternal allele-dependent expression.		Os01g0588600	LOC_Os01g40600.1						
23372	_		_	Hypothetical protein			1	a gene in rice zygotes with paternal allele-dependent expression.		Os01g0627916							
23373	_		_	Conserved hypothetical protein			1	a gene in rice zygotes with paternal allele-dependent expression.		Os01g0843700	LOC_Os01g62584.1				GO:0045786 - negative regulation of cell cycle, GO:0032875 - regulation of DNA endoreduplication, GO:0005634 - nucleus, GO:0045839 - negative regulation of mitosis		
23374	_		_	HAD-superfamily phosphatase subfamily IIIC			3	a gene in rice zygotes with paternal allele-dependent expression.	 Biochemical character	Os03g0737300	LOC_Os03g52720.1				GO:0003993 - acid phosphatase activity		
23375	_		_	Similar to GAMYB-binding protein			6	a gene in rice zygotes with paternal allele-dependent expression.		Os06g0507300	LOC_Os06g31090.1				GO:0005634 - nucleus, GO:0010114 - response to red light		
23376	_		_	Hypothetical protein			10	a gene in rice zygotes with paternal allele-dependent expression.		Os10g0386300	LOC_Os10g24690.1						
23377	BGL2	OsBGL2	BETA-GLUCANASE 2	Similar to Beta-glucanase precursor, beta-glucanase 2	BETA-GLUCANASE 2		11	a gene in rice zygotes with paternal allele-dependent expression.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0704600	LOC_Os11g47820.2, LOC_Os11g47820.1				GO:0050832 - defense response to fungus, GO:0010497 - plasmodesmata-mediated intercellular transport, GO:0046658 - anchored to plasma membrane, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009751 - response to salicylic acid stimulus, GO:0052542 - callose deposition during defense response, GO:0009611 - response to wounding, GO:0009506 - plasmodesma	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
23378	MIR396I	miR396i, osa-miR396i, osa-MIR396i	MICRORNA396I	MICRORNA396i, osa-miRNA396i	_				 Other,  Tolerance and resistance - Stress tolerance						GO:0006379 - mRNA cleavage, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0035195 - gene silencing by miRNA, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
23379	_		_	SABATH methyltransferase Group A1			6		 Biochemical character	Os06g0313440	LOC_Os06g20790.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008168 - methyltransferase activity, GO:0032259 - methylation		
23380	_		_	SABATH methyltransferase Group A1			6		 Biochemical character	Os06g0315000	LOC_Os06g20960.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008168 - methyltransferase activity, GO:0032259 - methylation		
23381	_		_	SABATH methyltransferase Group A1			6		 Biochemical character	Os06g0315300	LOC_Os06g21020.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation		
23382	JMT2	OsJMT1, JMT1, OsJMT2	JASMONIC ACID CARBOXY METHYL TRANSFERASE 2	SABATH methyltransferase Group A1	JASMONIC ACID CARBOXY METHYL TRANSFERASE 2		6	OsJMT1 in He et al. 2016, Wu et al. 2024. GO:0090333: regulation of stomatal closure.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0329900	LOC_Os06g22440.2, LOC_Os06g22440.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0010118 - stomatal movement, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0002237 - response to molecule of bacterial origin, GO:0032259 - methylation, GO:0051607 - defense response to virus, GO:0009753 - response to jasmonic acid stimulus, GO:0009694 - jasmonic acid metabolic process	TO:0000020 - black streak dwarf virus resistance, TO:0000259 - heat tolerance, TO:0002668 - jasmonic acid content, TO:0000522 - stomatal conductance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000172 - jasmonic acid sensitivity	
23383	_		_	SABATH methyltransferase Group A2			6		 Biochemical character	Os06g0311800	LOC_Os06g20630.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation		
23384	_		_	SABATH methyltransferase Group A2			6		 Biochemical character	Os06g0313320	LOC_Os06g20770.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation		
23385	_		_	SABATH methyltransferase Group A2			11		 Biochemical character	Os11g0256600	LOC_Os11g15030.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation		
23386	_		_	SABATH methyltransferase Group A2			11		 Biochemical character	Os11g0257700	LOC_Os11g15130.1				GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity		
23387	_		_	SABATH methyltransferase Group A2			11		 Biochemical character	Os11g0259700	LOC_Os11g15300.1				GO:0032259 - methylation, GO:0008168 - methyltransferase activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity		
23388	_		_	SABATH methyltransferase Group A2			6		 Biochemical character	Os06g0241400	LOC_Os06g13350.1				GO:0008168 - methyltransferase activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation		
23389	_		_	SABATH methyltransferase Group A2			6		 Biochemical character	Os06g0242000	LOC_Os06g13390.1				GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity		
23390	_		_	SABATH methyltransferase Group A2			6		 Biochemical character	Os06g0242900	LOC_Os06g13470.1				GO:0008168 - methyltransferase activity		
23391	_		_	SABATH methyltransferase Group A2			6		 Biochemical character	Os06g0243300	LOC_Os06g13490.1				GO:0008168 - methyltransferase activity		
23392	_		_	SABATH methyltransferase Group A2			6		 Biochemical character	Os06g0244000	LOC_Os06g13560.1, LOC_Os06g13560.2, LOC_Os06g13560.3, LOC_Os06g13560.4, LOC_Os06g13560.5				GO:0008168 - methyltransferase activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0032259 - methylation		
23393	4OCLAMT1	Os4OCLAMT1	4-OXO CARLACTONOIC ACID METHYL TRANSFERASE 1	SABATH methyltransferase Group B2, CLAMT-like, CLA METHYLTRANSFERASE-like, 4-oxo carlactonoic acid methyl transferase 1	4-OXO CARLACTONOIC ACID METHYL TRANSFERASE 1		1	a CLAMT homolog. GO:1902347: response to strigolactone. GO:1901601: strigolactone biosynthetic process. 	 Biochemical character	Os01g0700300	LOC_Os01g50480.1				GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity	TO:0000401 - plant growth hormone sensitivity	
23394	SAMT	OsSAMT, OsJMT1, JMT1, Os4OCLAMT2, 4OCLAMT2	SALICYLIC ACID CARBOXYMETHYL TRANSFERASE	SABATH methyltransferase Group B2, Salicylate carboxymethyl transferase, salicylic acid carboxymethyl transferase, 4-oxo carlactonoic acid methyl transferase 2	SALICYLIC ACID CARBOXYMETHYL TRANSFERASE		1	OsJMT1 in Li et al. 2022. GO:1901601: strigolactone biosynthetic process. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0701700	LOC_Os01g50610.1, LOC_Os01g50610.2				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009408 - response to heat, GO:0032259 - methylation	TO:0000259 - heat tolerance	
23395	PRD2	OsPRD2, OsPRD2/MPS1, OsMPS1, MPS1	PUTATIVE RECOMBINATION INITIATION DEFECT 2	MULTIPOLAR SPINDLE 1		osprd2	8		 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0555800	LOC_Os08g44180.1				GO:0042138 - meiotic DNA double-strand break formation, GO:0000212 - meiotic spindle organization, GO:0051321 - meiotic cell cycle, GO:0007140 - male meiosis, GO:0007059 - chromosome segregation	TO:0000729 - meiotic cell cycle trait, TO:0000437 - male sterility, TO:0000358 - female sterility	
23396	ALEX1	OsALEX1	AN LEAF EXPRESSED AND XOO-INDUCED LNCRNA 1	An Leaf Expressed and Xoo-induced lncRNA 1			8		 Tolerance and resistance - Disease resistance	Os08g0456450					GO:0009867 - jasmonic acid mediated signaling pathway, GO:0042742 - defense response to bacterium	TO:0002668 - jasmonic acid content, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity	
23398	GRAM	OsGRAM	GRAM DOMAIN CONTAINING PROTEIN	GRAM domain containing protein	GRAM DOMAIN CONTAINING PROTEIN		3	GO:1903840: response to arsenite(3-). Functional expressions of OsNAM and OsGRAM in yeast showed enhanced tolerance to various abiotic stresses (Chauhan et al. 2019).	 Tolerance and resistance - Stress tolerance	Os03g0187600	LOC_Os03g08860.2, LOC_Os03g08860.1				GO:0009651 - response to salt stress, GO:0009609 - response to symbiotic bacterium, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
23399	SDRLK29	SRK, SDRLK-29, OsSDRLK-29, OsSDRLK29	S-DOMAIN RECEPTOR LIKE KINASE 29	S-locus receptor kinase, S-Domain receptor like kinase-29	S-DOMAIN RECEPTOR LIKE KINASE 29		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0506700	LOC_Os04g42740.1				GO:0005886 - plasma membrane, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009609 - response to symbiotic bacterium	TO:0006001 - salt tolerance	PO:0009005 - root 
23400	_		_	uncharacterized receptor protein kinase			3		 Tolerance and resistance - Stress tolerance	Os03g0564600					GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009609 - response to symbiotic bacterium, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
23401	MGD1	OsMGD1	MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1	Monogalactosyldiacylglycerol synthase 1, MGDG synthase 1	MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1		9	Q69QJ7.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0423600	LOC_Os09g25580.1				GO:0006794 - phosphorus utilization, GO:0055075 - potassium ion homeostasis, GO:0009247 - glycolipid biosynthetic process, GO:0031969 - chloroplast membrane, GO:0006643 - membrane lipid metabolic process, GO:0055078 - sodium ion homeostasis, GO:0046509 - 1,2-diacylglycerol 3-beta-galactosyltransferase activity, GO:0042594 - response to starvation, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress	TO:0000316 - photosynthetic ability, TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance, TO:0001034 - relative plant height, TO:0002664 - leaf yellowing tolerance, TO:0001016 - relative chlorophyll content, TO:0000102 - phosphorus sensitivity, TO:0000604 - fat and essential oil content, TO:0000627 - relative phosphorus utilization efficiency, TO:0000636 - relative shoot dry weight, TO:0000143 - relative biomass, TO:0000644 - relative root dry weight, TO:0000608 - sodium content, TO:0000609 - potassium content, TO:0002657 - oxidative stress	PO:0025034 - leaf , PO:0009010 - seed , PO:0009046 - flower 
23402	_	OsCOP9, COP9	_	COP9 complex subunit 3, COP9 signalosome subunit 3			8			Os08g0119000	LOC_Os08g02550.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008180 - signalosome, GO:0005634 - nucleus, GO:0005737 - cytoplasm		
23403	_	UN1	_				1			Os01g0112100	LOC_Os01g02170.1, LOC_Os01g02170.2				GO:0005829 - cytosol, GO:0005634 - nucleus		
23404	CAF1	OsCAF1	CRS2-ASSOCIATED FACTOR 1	CRS2-associated factor 1	CRS2-ASSOCIATED FACTOR 1	oscaf1	1	Q5VMQ5. the ortholog of ZmCAF1 in rice. a chloroplast RNA splicing and ribosome maturation (CRM) domain protein.	 Coloration - Others,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os01g0495900	LOC_Os01g31110.1				GO:0000373 - Group II intron splicing, GO:0009570 - chloroplast stroma, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0003723 - RNA binding, GO:0006397 - mRNA processing	TO:0000295 - chlorophyll-b content, TO:0000316 - photosynthetic ability, TO:0000326 - leaf color, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0006001 - salt tolerance, TO:0000496 - carotenoid content, TO:0000605 - hydrogen peroxide content, TO:0000293 - chlorophyll-a content	PO:0009051 - spikelet , PO:0009047 - stem , PO:0025034 - leaf 
23405	CRS2	OsCRS2	CHLOROPLAST RNA SPLICING 2	chloroplast RNA splicing 2	CHLOROPLAST RNA SPLICING 2 PROTEIN	crs2	1	Q5ZCL8. ZmCRS2 homologous gene in rice.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os01g0132800	LOC_Os01g04130.1				GO:0015979 - photosynthesis, GO:0009642 - response to light intensity, GO:0006979 - response to oxidative stress, GO:0009570 - chloroplast stroma, GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0004045 - aminoacyl-tRNA hydrolase activity	TO:0000326 - leaf color, TO:0000460 - light intensity sensitivity, TO:0002657 - oxidative stress, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000605 - hydrogen peroxide content	
23406	FAH2	OsFAH2	FATTY ACID HYDROXYLASE 2	fatty acid hydroxylase 2	FATTY ACID HYDROXYLASE 2		3		 Biochemical character,  Seed - Physiological traits,  Tolerance and resistance - Stress tolerance	Os03g0108500	LOC_Os03g01820.1				GO:0050995 - negative regulation of lipid catabolic process, GO:0016020 - membrane, GO:0016209 - antioxidant activity, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0016126 - sterol biosynthetic process, GO:0016491 - oxidoreductase activity, GO:0005506 - iron ion binding, GO:0000254 - C-4 methylsterol oxidase activity	TO:0000345 - seed viability, TO:0002657 - oxidative stress	
23407	_	OsHyPRP3, HyPRP3	_	Hybrid Proline-Rich Protein 3			2			Os02g0724700	LOC_Os02g49280.1						
23408	_	OsHyPRP7, HyPRP7	_	Hybrid Proline-Rich Protein 7			3		 Tolerance and resistance - Disease resistance	Os03g0250400	LOC_Os03g14630.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23409	_	OsHyPRP8, HyPRP8	_	Hybrid Proline-Rich Protein 8			3		 Tolerance and resistance - Disease resistance		LOC_Os03g14642.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23410	_	OsHyPRP9, HyPRP9	_	Hybrid Proline-Rich Protein 9			3		 Tolerance and resistance - Disease resistance	Os03g0251000	LOC_Os03g14654.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23411	_	OsHyPRP11, HyPRP11	_	Hybrid Proline-Rich Protein 11			3			Os03g0629100	LOC_Os03g43050.1						
23412	_	OsHyPRP16, HyPRP16	_	Hybrid Proline-Rich Protein 16			4	GO:1901149: salicylic acid binding.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0612500	LOC_Os04g52260.1				GO:0015485 - cholesterol binding, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0070539 - linoleic acid binding, GO:0032934 - sterol binding	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
23413	_	OsHyPRP18, HyPRP18, OsHyPRP19, HyPRP19	_	Hybrid Proline-Rich Protein 18, Hybrid Proline-Rich Protein 19			6	LOC_Os06g43600.1 as OsHyPRP18 and LOC_Os06g43600.2 as OsHyPRP19 in Kapoor et al. 2019.		Os06g0643500	LOC_Os06g43600.2, LOC_Os06g43600.1						
23414	HYPRP22	OsHyPRP22, HyPRP22	HYBRID PROLINE-RICH PROTEIN 22	Hybrid Proline-Rich Protein 22	HYBRID PROLINE-RICH PROTEIN 22		7			Os07g0474850	LOC_Os07g29230.1				GO:0006869 - lipid transport, GO:0008289 - lipid binding		
23415	HYPRP23	OsHyPRP23, HyPRP23	HYBRID PROLINE-RICH PROTEIN 23	Hybrid Proline-Rich Protein 23	HYBRID PROLINE-RICH PROTEIN 23		7			Os07g0561101	LOC_Os07g37385.1				GO:0005199 - structural constituent of cell wall		
23416	HYPRP24	OsHyPRP24, HyPRP24	HYBRID PROLINE-RICH PROTEIN 24	Hybrid Proline-Rich Protein 24	HYBRID PROLINE-RICH PROTEIN 24		7			Os07g0585200	LOC_Os07g39640.1						
23417	HYPRP26	OsHyPRP26, HyPRP26	HYBRID PROLINE-RICH PROTEIN 26	Hybrid Proline-Rich Protein 26	HYBRID PROLINE-RICH PROTEIN 26		10		 Biochemical character	Os10g0178000	LOC_Os10g09920.1				GO:0008233 - peptidase activity		
23418	HYPRP28	OsHyPRP28, HyPRP28	HYBRID PROLINE-RICH PROTEIN 28	Hybrid Proline-Rich Protein 28	HYBRID PROLINE-RICH PROTEIN 28		10			Os10g0193100	LOC_Os10g11730.1				GO:0016021 - integral to membrane		
23419	HYPRP43	OsHyPRP43, HyPRP43	HYBRID PROLINE-RICH PROTEIN 43	Hybrid Proline-Rich Protein 43	HYBRID PROLINE-RICH PROTEIN 43		11		 Tolerance and resistance - Disease resistance		LOC_Os11g02165.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23420	HYPRP44	OsHyPRP44, HyPRP44	HYBRID PROLINE-RICH PROTEIN 44	Hybrid Proline-Rich Protein 44	HYBRID PROLINE-RICH PROTEIN 44		12	CT835544.	 Tolerance and resistance - Disease resistance	Os12g0112401	LOC_Os12g02105.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23421	HYPRP45	OsHyPRP45, HyPRP45	HYBRID PROLINE-RICH PROTEIN 45	Hybrid Proline-Rich Protein 45	HYBRID PROLINE-RICH PROTEIN 45		12	CT835596. protease inhibitor/seed storage/lipid transfer proteins family. a candidate gene regulating amylose content (AC) in rice grain. OsHyPRP45 was located in the local LD block of qAC12-1. 	 Seed - Physiological traits - Storage substances	Os12g0473900	LOC_Os12g28880.1					TO:0000196 - amylose content	PO:0020032 - plumule 
23422	HYPRP46	OsHyPRP46, HyPRP46	HYBRID PROLINE-RICH PROTEIN 46	Hybrid Proline-Rich Protein 46	HYBRID PROLINE-RICH PROTEIN 46		12				LOC_Os12g29040.1						
23423	NPH1B	PHOT2, OsPHOT2, OsNPH1b, OsAGC9, AGC9	NONPHOTOTROPHIC HYPOCOTYL 1B	phototropin 2, nonphototrophic hypocotyl 1b, AGC protein kinase 9	PHOTOTROPIN 2		4	Q9ST27. AB018443.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0304200	LOC_Os04g23890.4, LOC_Os04g23890.3, LOC_Os04g23890.1, LOC_Os04g23890.2				GO:0018298 - protein-chromophore linkage, GO:0009416 - response to light stimulus, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0006468 - protein amino acid phosphorylation, GO:0015979 - photosynthesis, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0004674 - protein serine/threonine kinase activity, GO:0009882 - blue light photoreceptor activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000075 - light sensitivity	PO:0025034 - leaf 
23424	_		_	CYTOCHROME B-C1 COMPLEX SUBUNIT8			6		 Biochemical character	Os06g0177000	LOC_Os06g07969.1				GO:0005743 - mitochondrial inner membrane, GO:0016021 - integral to membrane, GO:0008121 - ubiquinol-cytochrome-c reductase activity, GO:0070469 - respiratory chain		
23425	_		_	C18 hydroxylase			6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0254600	LOC_Os06g14350.1, LOC_Os06g14350.2				GO:0005509 - calcium ion binding, GO:0042542 - response to hydrogen peroxide, GO:0004497 - monooxygenase activity	TO:0002657 - oxidative stress	
23426	_	MRE11, OsMRE11	_	double-strand break repair protein MRE11, OsMRE11-like protein			8	GO:0097552: mitochondrial double-strand break repair via homologous recombination. GO:0035861: site of double-strand break.	 Tolerance and resistance - Stress tolerance	Os08g0177600	LOC_Os08g08030.1				GO:0007095 - mitotic cell cycle G2/M transition DNA damage checkpoint, GO:0030870 - Mre11 complex, GO:0000723 - telomere maintenance, GO:0042138 - meiotic DNA double-strand break formation, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0000724 - double-strand break repair via homologous recombination, GO:0000014 - single-stranded DNA specific endodeoxyribonuclease activity, GO:0030145 - manganese ion binding, GO:0008296 - 3'-5'-exodeoxyribonuclease activity, GO:0010212 - response to ionizing radiation, GO:0010332 - response to gamma radiation	TO:0000161 - radiation response trait	
23427	IQM5	OsIQM5	IQ MOTIF CONTAINING PROTEIN 5	Calmodulin-binding protein, IQ motif containing protein 5	IQ MOTIF CONTAINING PROTEIN 5		7	orthologous to Zea mays Zm2g318843.	 Tolerance and resistance - Stress tolerance	Os07g0633400	LOC_Os07g43970.1				GO:0005829 - cytosol, GO:0006970 - response to osmotic stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress, GO:0010212 - response to ionizing radiation, GO:0009737 - response to abscisic acid stimulus, GO:0010332 - response to gamma radiation	TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000161 - radiation response trait	
23428	_		_	MYB family transcription factor			7	CT836143.		Os07g0443500	LOC_Os07g26150.1				GO:0003677 - DNA binding		
23429	ANR3	OsANR3	ANTHOCYANIDIN REDUCTASE 3	leucoanthocyanidin reductase, anthocyanidin reductase 3	ANTHOCYANIDIN REDUCTASE 3		4		 Biochemical character	Os04g0630400	LOC_Os04g53810.1				GO:0050662 - coenzyme binding, GO:0009753 - response to jasmonic acid stimulus, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0016491 - oxidoreductase activity	TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
23430	_	IBP	_	ice-binding protein, antifreeze protein, ice recrystallization inhibition protein			12				LOC_Os12g21950.1						
23431	_	IBP	_	ice-binding protein, antifreeze protein, ice recrystallization inhibition protein			7				LOC_Os07g42560.1						
23432	_		_	cysteine-type endopeptidase			9		 Biochemical character	Os09g0564000	LOC_Os09g39060.1				GO:0051603 - proteolysis involved in cellular protein catabolic process, GO:0005764 - lysosome, GO:0004197 - cysteine-type endopeptidase activity, GO:0005615 - extracellular space		
23433	CTF	OsCTF	CADMIUM TOLERANCE FACTOR	cadmium tolerance factor	CADMIUM TOLERANCE FACTOR	Osctf	6	TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance,  Other	Os06g0296100	LOC_Os06g19210.1				GO:0016020 - membrane, GO:0046686 - response to cadmium ion, GO:0016021 - integral to membrane		
23434	ESG1	OsESG1, SDRLK-ESG1, OsSDRLK-ESG1	S-DOMAIN RECEPTOR-LIKE KINASE-ESG1	S-domain receptor-like kinase-ESG1	S-DOMAIN RECEPTOR-LIKE KINASE-ESG1		1		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os01g0223800	LOC_Os01g12410.1				GO:0004674 - protein serine/threonine kinase activity, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen, GO:0009926 - auxin polar transport, GO:0009734 - auxin mediated signaling pathway, GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0005524 - ATP binding	TO:0002685 - crown root number, TO:0000656 - root development trait, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity, TO:0002672 - auxin content, TO:0000095 - osmotic response sensitivity, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009051 - spikelet , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0007518 - crown root emergence stage , PO:0007520 - root development stage 
23435	5NG4	Os5NG4	_				1			Os01g0546100	LOC_Os01g36560.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity		
23436	_	Hsp20	_	heat shock protein 20			2	B7EZJ7.	 Tolerance and resistance - Stress tolerance	Os02g0201000	LOC_Os02g10710.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity, GO:0009408 - response to heat, GO:0005739 - mitochondrion		
23437	REY(K2)	OsPFKB1, PFKB1	REVERTIBLE EARLY YELLOWING KITAAKE 2	revertible early yellowing Kitaake 2, Phosphofructokinase B-type 1	PHOSPHOFRUCTOKINASE B-TYPE 1	rey(k2)	10		 Vegetative organ - Culm,  Coloration - Chlorophyll,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Biochemical character,  Seed - Morphological traits,  Vegetative organ - Leaf	Os10g0573000	LOC_Os10g42240.2, LOC_Os10g42240.1				GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0015979 - photosynthesis, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0019200 - carbohydrate kinase activity, GO:0009658 - chloroplast organization, GO:0008443 - phosphofructokinase activity	TO:0000040 - panicle length, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000293 - chlorophyll-a content, TO:0000455 - seed set percent, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000152 - panicle number	
23438	PTC2	OsPTC2, OsAHL4, AHL4	PERSISTENT TAPETAL CELL 2	PERSISTENT TAPETAL CELL2, AT-hook motif DNA-binding protein 4, AT-hook motif nuclear localized protein 4	AT-HOOK MOTIF DNA-BINDING PROTEIN 4	ptc2, ptc2-1, ptc2-2	2	CT837915. an AT-hook nuclear localized protein, an AHL family protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os02g0820800	LOC_Os02g57520.1				GO:0010208 - pollen wall assembly, GO:0009555 - pollen development, GO:0048653 - anther development, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0043068 - positive regulation of programmed cell death, GO:0003680 - AT DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000437 - male sterility, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
23439	NSG1	OsNSG1	NONSTOP GLUMES1	nonstop glumes 1		nsg1-1, nsg1-2, nsg1-3	4	a C2H2 Zinc Finger Protein. TO:1000024: palea morphology trait. TO:0000856: lodicule length.	 Reproductive organ - Spikelet, flower, glume, awn	Os04g0444100	LOC_Os04g36650.1				GO:0003676 - nucleic acid binding, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0020033 - glume length, TO:0000240 - sterile lemma length, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0002727 - sterile lemma width, TO:0006009 - lodicule anatomy and morphology trait	PO:0001083 - inflorescence development stage , PO:0025127 - primordium , PO:0009051 - spikelet 
23440	DIM1	OsDim1	DEFECTIVE ENTRY INTO MITOSIS 1	Defective Entry into Mitosis 1			10	thioredoxin (TRX)-super family protein. GO:0090351: seedling development. TO:0000949: seedling growth and development trait. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Root,  Vegetative organ - Culm	Os10g0486600	LOC_Os10g34520.1				GO:0046540 - U4/U6 x U5 tri-snRNP complex, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0009860 - pollen tube growth, GO:0005682 - U5 snRNP	TO:0000447 - filled grain number, TO:0002675 - gibberellic acid content, TO:0000227 - root length, TO:0002660 - cytokinin content, TO:0002672 - auxin content, TO:0000371 - yield trait, TO:0002667 - abscisic acid content, TO:0000476 - growth hormone content, TO:0000576 - stem length, TO:0000346 - tiller number, TO:0000455 - seed set percent	PO:0025034 - leaf , PO:0025395 - floral organ , PO:0025195 - pollen tube cell , PO:0025281 - pollen , PO:0009006 - shoot system , PO:0009009 - plant embryo , PO:0009005 - root , PO:0009089 - endosperm , PO:0020110 - scutellum , PO:0005004 - shoot node , PO:0007131 - seedling development stage , PO:0020104 - leaf sheath , PO:0020142 - stem internode 
23441	NPF6.1	OsNPF6.1	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 6.1	NRT1/PTR family protein 6.1	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 6.1	OsNPF6.1HapB, OsNPF6.1HapA	1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity. GO:0090352 : regulation of nitrate assimilation. GO:1901698: response to nitrogen compound. TO:0020100: nitrate uptake.	 Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance	Os01g0103100	LOC_Os01g01360.1				GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0006857 - oligopeptide transport, GO:0042128 - nitrate assimilation, GO:0015333 - peptide:hydrogen symporter activity, GO:0016021 - integral to membrane	TO:0001032 - relative panicle number, TO:0000371 - yield trait, TO:0000011 - nitrogen sensitivity	
23442	DSK2A	OsDSK2a	DOMINANT SUPPRESSOR OF KAR2 A	DOMINANT SUPPRESSOR of KAR2 a		osdsk2a, osdsk2a-c1, osdsk2a-c2	3	a homolog of Arabidopsis DSK2. TO:0000949: seedling growth and development trait.	 Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os03g0131300	LOC_Os03g03920.5, LOC_Os03g03920.4, LOC_Os03g03920.3, LOC_Os03g03920.1				GO:0031593 - polyubiquitin binding, GO:0009685 - gibberellin metabolic process, GO:0009651 - response to salt stress, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005829 - cytosol	TO:0002675 - gibberellic acid content, TO:0006001 - salt tolerance	
23443	DSK2B	OsDSK2b	DOMINANT SUPPRESSOR OF KAR2 B	DOMINANT SUPPRESSOR of KAR2 b		osdsk2b	10	a homolog of Arabidopsis DSK2.		Os10g0542200	LOC_Os10g39620.1, LOC_Os10g39620.2, LOC_Os10g39620.3, LOC_Os10g39620.4, LOC_Os10g39620.5, LOC_Os10g39620.6, LOC_Os10g39620.7				GO:0005829 - cytosol, GO:0031593 - polyubiquitin binding, GO:0006511 - ubiquitin-dependent protein catabolic process		
23444	FLO14	OsFLO14, OsNPPR3, NPPR3	FLOURY ENDOSPERM 14	floury endosperm14, Nucleolus-Localized Pentatricopeptide Repeat Protein 3	NUCLEOLUS-LOCALIZED PENTATRICOPEPTIDE REPEAT PROTEIN 3	flo14	3	TO:0000753: coleoptile morphology trait.	 Seed - Physiological traits - Storage substances	Os03g0728200	LOC_Os03g51840.1				GO:0009960 - endosperm development, GO:0005730 - nucleolus, GO:0019252 - starch biosynthetic process	TO:0000196 - amylose content, TO:0000104 - floury endosperm, TO:0000345 - seed viability, TO:0000696 - starch content	PO:0007633 - endosperm development stage 
23445	FPFL2	OsFPFL2	FPF1-LIKE PROTEIN 2	FPF1-like protein 2, FPF1-like 2, flowering-promoting factor 1-like 2	FPF1-LIKE PROTEIN 2		1	AY304538. Q8LR63.		Os01g0933500	LOC_Os01g70730.1				GO:0009909 - regulation of flower development		
23446	FPFL3	OsFPFL3	FPF1-LIKE PROTEIN 3	FPF1-like protein 3, FPF1-like 3, flowering-promoting factor 1-like 3	FPF1-LIKE PROTEIN 3		2	Q0E1D7.		Os02g0460200	LOC_Os02g26210.1				GO:0009909 - regulation of flower development		
23447	FPFL4	OsFPFL4	FPF1-LIKE PROTEIN 4	FPF1-like protein 4, FPF1-like 4, flowering-promoting factor 1-like 4	FPF1-LIKE PROTEIN 4		4	Q0JEF5. GO:2000280: regulation of root development. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process. GO:0060918: auxin transport. GO:2000028: regulation of photoperiodism, flowering. TO:1000022: anther morphology trait.	 Reproductive organ - Heading date,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0282400	LOC_Os04g21350.2, LOC_Os04g21350.1				GO:0006970 - response to osmotic stress, GO:0048364 - root development, GO:0009733 - response to auxin stimulus, GO:0048653 - anther development, GO:0009555 - pollen development, GO:0048573 - photoperiodism, flowering, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010600 - regulation of auxin biosynthetic process, GO:0009909 - regulation of flower development	TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0002616 - flowering time, TO:0001006 - adventitious root number, TO:0001013 - lateral root number, TO:0000227 - root length, TO:0000605 - hydrogen peroxide content, TO:0002672 - auxin content, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0007520 - root development stage 
23448	FPFL5	OsFPFL5, ACL1, OsACL1	FPF1-LIKE PROTEIN 5	FPF1-like protein 5, FPF1-like 5, flowering-promoting factor 1-like 5, ACE1-LIKE 1	FPF1-LIKE PROTEIN 5		7	A3BNA1.		Os07g0671000	LOC_Os07g47450.1				GO:0009909 - regulation of flower development		
23449	NADK1	OsNADK1	NAD KINASE 1	NAD kinase 1	NAD KINASE 1	osnadk1	1	Q5JK52.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os01g0957000	LOC_Os01g72690.2, LOC_Os01g72690.1				GO:0006741 - NADP biosynthetic process, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0045454 - cell redox homeostasis, GO:0005524 - ATP binding, GO:0003951 - NAD+ kinase activity, GO:0019674 - NAD metabolic process	TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000495 - chlorophyll content, TO:0002637 - leaf size, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0006002 - proline content, TO:0000207 - plant height	PO:0000003 - whole plant 
23450	DF	GPI8, OsGPI8	DROOPING AND FRAGILE	GPI transamidase catalytic subunit 8, drooping and fragile	GPI TRANSAMIDASE CATALYTIC SUBUNIT 8	df	2	TO:0020083: stem diameter. TO:0000820: leaf vein morphology trait. TO:0000993: cellulose content. TO:0020109: vascular bundle development trait.	 Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0219400	LOC_Os02g12740.1				GO:0009266 - response to temperature stimulus, GO:0044038 - cell wall macromolecule biosynthetic process, GO:0016255 - attachment of GPI anchor to protein, GO:0034394 - protein localization at cell surface, GO:0010375 - stomatal complex patterning, GO:0042765 - GPI-anchor transamidase complex, GO:0051301 - cell division, GO:0003923 - GPI-anchor transamidase activity, GO:0008233 - peptidase activity	TO:0000432 - temperature response trait, TO:0000333 - sugar content, TO:0000731 - lignin content, TO:0000145 - internode length, TO:0000051 - stem strength	
23451	LTT1	OsLTT1	LOW-TEMPERATURE TOLERANCE 1	low-temperature tolerance 1		ltt1	10	GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity,  Tolerance and resistance - Lesion mimic	Os10g0482200	LOC_Os10g34110.1				GO:0009555 - pollen development, GO:0048573 - photoperiodism, flowering, GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000346 - tiller number, TO:0000137 - days to heading, TO:0000063 - mimic response, TO:0000455 - seed set percent, TO:0000303 - cold tolerance, TO:0000605 - hydrogen peroxide content	PO:0001007 - pollen development stage 
23452	SRLK	OsSRLK	SENESCENCE-INDUCED RECEPTOR-LIKE KINASE	Senescence-Induced Receptor-Like Kinase	SENESCENCE-INDUCED RECEPTOR-LIKE KINASE	ossrlk	1	PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os01g0223600	LOC_Os01g12390.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0015996 - chlorophyll catabolic process, GO:0010150 - leaf senescence	TO:0000456 - spikelet number, TO:0000152 - panicle number, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000249 - leaf senescence	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0001054 - 4 leaf senescence stage 
23453	GPA5	OsGPA5	GLUTELIN PRECURSOR ACCUMULATION 5	glutelin precursor accumulation5		gpa5	6	a plant-unique phox-homology domain-containing protein homologous to Arabidopsis EREX (ENDOSOMAL RAB EFFECTOR WITH PX-DOMAIN).	 Seed - Physiological traits - Storage substances	Os06g0643000	LOC_Os06g43560.1				GO:0015031 - protein transport, GO:0048316 - seed development, GO:0035091 - phosphoinositide binding, GO:0006892 - post-Golgi vesicle-mediated transport, GO:0016020 - membrane	TO:0000104 - floury endosperm, TO:0000487 - endosperm color, TO:0002653 - endosperm storage protein content	PO:0001170 - seed development stage , PO:0009089 - endosperm 
23454	RBG1	OsRBG1, MAPKKK67, OsMAPKKK67	RICE BIG GRAIN 1	Rice Big Grain 1, mitogen-activated protein kinase kinase kinase 67	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 67		11	GO:0099402: plant organ development. GO:2000280: regulation of root development.	 Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape	Os11g0497350	LOC_Os11g30430.1				GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0048364 - root development, GO:0051781 - positive regulation of cell division, GO:0009628 - response to abiotic stimulus, GO:0009414 - response to water deprivation, GO:0080050 - regulation of seed development	TO:0000396 - grain yield, TO:0000128 - harvest index, TO:0000145 - internode length, TO:0000207 - plant height, TO:0000259 - heat tolerance, TO:0000163 - auxin sensitivity, TO:0002672 - auxin content, TO:0000656 - root development trait, TO:0000040 - panicle length, TO:0000576 - stem length, TO:0000227 - root length, TO:0000592 - 1000-dehulled grain weight, TO:0000146 - seed length, TO:0000734 - grain length, TO:0000397 - grain size, TO:0000168 - abiotic stress trait, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000653 - seed development trait	PO:0007520 - root development stage , PO:0007518 - crown root emergence stage , PO:0004010 - meristematic cell , PO:0001170 - seed development stage 
23455	RBG1-L	OsRBG1-L	RBG1-LIKE	RBG1-like			1		 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os01g0922100	LOC_Os01g69290.1					TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000146 - seed length	
23456	PLGG1	OsPLGG1, OsPLGG1a, PLGG1a	PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 1	plastidic glycolate/glycerate translocator 1, plastidic glycolate/glycerate translocator 1a	PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 1	osplgg1-1, osplgg1-2, osplgg1-3, osplgg1a, osplgg1a-1, osplgg1a-2	1	an AtPLGG1 Homolog. GO:1901974: glycerate transmembrane transporter activity.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os01g0511600	LOC_Os01g32830.1, LOC_Os01g32830.2				GO:0016021 - integral to membrane, GO:0043879 - glycolate transmembrane transporter activity, GO:0009651 - response to salt stress, GO:0009853 - photorespiration, GO:0009706 - chloroplast inner membrane, GO:0015979 - photosynthesis, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0001027 - net photosynthetic rate, TO:0000371 - yield trait, TO:0000396 - grain yield, TO:0000207 - plant height, TO:0006001 - salt tolerance, TO:0000696 - starch content, TO:0000316 - photosynthetic ability, TO:0000281 - metabolite content related trait, TO:0000357 - growth and development trait, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000592 - 1000-dehulled grain weight, TO:0001015 - photosynthetic rate, TO:0000590 - grain weight, TO:0000346 - tiller number	
23457	PLGG2	OsPLGG2, OsPLGG1b, PLGG1b	PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 2	plastidic glycolate/glycerate translocator 2, plastidic glycolate/glycerate translocator 1b	PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 2	osplgg2-1, osplgg2-2, osplgg1b, osplgg1b-1, osplgg1b-2, osplgg1b-3, osplgg1b-4	10	an AtPLGG1 Homolog.  GO:1901974: glycerate transmembrane transporter activity.	 Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os10g0578800	LOC_Os10g42780.6, LOC_Os10g42780.1, LOC_Os10g42780.2, LOC_Os10g42780.3, LOC_Os10g42780.5				GO:0015979 - photosynthesis, GO:0016021 - integral to membrane, GO:0009707 - chloroplast outer membrane, GO:0043879 - glycolate transmembrane transporter activity, GO:0009507 - chloroplast, GO:0009853 - photorespiration, GO:0009658 - chloroplast organization	TO:0000382 - 1000-seed weight, TO:0000207 - plant height, TO:0001027 - net photosynthetic rate, TO:0000357 - growth and development trait, TO:0002715 - chloroplast development trait, TO:0001015 - photosynthetic rate, TO:0000281 - metabolite content related trait, TO:0000371 - yield trait, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000316 - photosynthetic ability, TO:0000696 - starch content, TO:0000455 - seed set percent	
23458	PTR	Ptr, OsPtr, Ptr(t)	PI-TA RESISTANCE	Pi-ta resistance		ptr(t)	12	The Ptr DNA sequences in O. barthii (OBART12G08790), O. glaberrima (ORGLA12G0083200), O. meridionalis (OMERI12G06260), O. longistaminata (KN539074.1_FG004), O. rufipogon (ORUFI12G09760), and O. nivara (ONI- VA12G08670) were retrieved from the Oryza Map Alignment Project (OMAP) on the Gramene website (http://www.gramene.org/).	 Tolerance and resistance - Disease resistance	Os12g0285100	LOC_Os12g18729.1, LOC_Os12g18729.2, LOC_Os12g18729.3, LOC_Os12g18729.4, LOC_Os12g18729.5				GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0005737 - cytoplasm	TO:0000074 - blast disease	
23459	RL1	OsRL1, OsEMP8, EMP8	RADICLELESS 1 	radicleless 1		rl1	8	a P-type PPR protein.	 Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm	Os08g0525500	LOC_Os08g41380.1				GO:0005739 - mitochondrion, GO:0009960 - endosperm development, GO:0000372 - Group I intron splicing, GO:0009790 - embryonic development	TO:0000620 - embryo development trait	PO:0007633 - endosperm development stage , PO:0007631 - plant embryo stage 
23460	GH1	OsGH1	GRAIN NUMBER AND PLANT HEIGHT1				2	a suppressor of actin (SAC) domain-containing phosphatase.	 Character as QTL - Plant growth activity	Os02g0554300	LOC_Os02g34884.1				GO:0060284 - regulation of cell development, GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity, GO:0046856 - phosphoinositide dephosphorylation, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0030837 - negative regulation of actin filament polymerization		
23461	SR45	OsSR45	_	splicing factor OsSR45			1		 Tolerance and resistance - Stress tolerance	Os01g0959000	LOC_Os01g72890.2, LOC_Os01g72890.1				GO:0009737 - response to abscisic acid stimulus, GO:0016607 - nuclear speck, GO:0006397 - mRNA processing, GO:0009628 - response to abiotic stimulus, GO:0005737 - cytoplasm, GO:0000380 - alternative nuclear mRNA splicing, via spliceosome	TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait	
23462	NHAD	OsNHAD	_				9	a putative Na+/H+ antiporter. GO:0035725: sodium ion transmembrane transport. GO:0061687: detoxification of inorganic compound.	 Tolerance and resistance - Stress tolerance	Os09g0109800	LOC_Os09g02214.3, LOC_Os09g02214.2, LOC_Os09g02214.1				GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0055078 - sodium ion homeostasis, GO:0006814 - sodium ion transport, GO:0031969 - chloroplast membrane, GO:0055085 - transmembrane transport, GO:0016021 - integral to membrane	TO:0000608 - sodium content, TO:0006001 - salt tolerance	PO:0025034 - leaf 
23463	WEG1	OsWEG1	WAVY ROOT ELONGATION GROWTH 1	wavy root elongation growth 1		weg1	9	a cell wall hydroxyproline-rich glycoprotein.	 Vegetative organ - Root	Os09g0509300	LOC_Os09g33510.2, LOC_Os09g33510.1				GO:0010311 - lateral root formation	TO:0001013 - lateral root number	
23464	MIZ1	OsMIZ1	MIZU-KUSSEI1 	MIZU-KUSSEI 1			2	an ortholog of Arabidopsis MIZU-KUSSEI1 (MIZ1).	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0709600	LOC_Os09g33510.2, LOC_Os09g33510.1				GO:0042594 - response to starvation, GO:0010038 - response to metal ion, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0006952 - defense response, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000480 - nutrient sensitivity, TO:0000112 - disease resistance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0025082 - reproductive shoot system 
23465	UGT90A1	OsUGT90A1	UDP-GLYCOSYLTRANSFERASE 90A1	UDP-glycosyltransferase enzyme UGT90A1, UDP-glycosyltransferase 90A1	UDP-GLYCOSYLTRANSFERASE 90A1		4	a gene associated with the low-temperature seedling survivability (LTSS) quantitative trait locus qLTSS4-1.	 Tolerance and resistance - Stress tolerance	Os04g0305700	LOC_Os04g24110.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0016021 - integral to membrane, GO:0008194 - UDP-glycosyltransferase activity, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009628 - response to abiotic stimulus	TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
23466	PDR2	OsPDR2	PHOSPHATE DEFICIENCY RESPONSE 2	Phosphate Deficiency Response2			5	the homolog of AtPDR2.	 Vegetative organ - Root,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ	Os05g0402800	LOC_Os05g33390.1				GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0010152 - pollen maturation, GO:0009846 - pollen germination, GO:0010073 - meristem maintenance, GO:0016021 - integral to membrane, GO:0016036 - cellular response to phosphate starvation, GO:0006874 - cellular calcium ion homeostasis, GO:0006812 - cation transport, GO:0046872 - metal ion binding, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0048364 - root development, GO:0055062 - phosphate ion homeostasis	TO:0000656 - root development trait, TO:0000371 - yield trait	PO:0007520 - root development stage 
23467	PSKR2	OsPSKR2, OsPSKR11, PSKR11	PHYTOSULFOKINE RECEPTOR 2 	phytosulfokine receptor 2, Phytosulfokine Receptor 11	PHYTOSULFOKINE RECEPTOR 2 		4	OsPSKR11 in Nagar et al. 2020.	 Tolerance and resistance - Stress tolerance	Os04g0672100 	LOC_Os04g57630.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root 
23468	PSKR3	OsPSKR3, OsPSKR15, PSKR15	PHYTOSULFOKINE RECEPTOR 3 	phytosulfokine receptor 3, Phytosulfokine Receptor 15	PHYTOSULFOKINE RECEPTOR 3 		7	PO:0030123: panicle inflorescence. OsPSKR15 in Nagar et al. 2020.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed	Os07g0107800 	LOC_Os07g01710.1				GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0001653 - peptide receptor activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0048316 - seed development, GO:0005886 - plasma membrane	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000653 - seed development trait	PO:0009009 - plant embryo , PO:0001170 - seed development stage , PO:0009030 - carpel 
23469	2R_MYB6 	OsMYB, Os2R_MYB6	R2R3-MYB TRANSCRIPTION FACTOR 6	MYB family transcription factor, P-type R2R3 MYB protein, R2R3-MYB Transcription Factor 6	R2R3-MYB TRANSCRIPTION FACTOR 6		1		 Tolerance and resistance - Stress tolerance,  Other	Os01g0298400	LOC_Os01g19330.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance	
23470	GELP115	OsGELP115	GDSL ESTERASE/LIPASE PROTEIN 115	GDSL esterase/lipase protein 115	GDSL ESTERASE/LIPASE PROTEIN 115	osgelp115	12		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os12g0126100					GO:0051321 - meiotic cell cycle, GO:0016787 - hydrolase activity, GO:0080110 - sporopollenin biosynthetic process, GO:0005777 - peroxisome, GO:0010584 - pollen exine formation, GO:0009555 - pollen development	TO:0000437 - male sterility	PO:0009066 - anther 
23471	SIR109944 	siR109944	SMALL INTERFERING RNA SIR109944	small interfering RNA siR109944					 Vegetative organ - Leaf,  Vegetative organ - Root,  Other,  Tolerance and resistance - Disease resistance						GO:0016246 - RNA interference, GO:0009850 - auxin metabolic process, GO:0009734 - auxin mediated signaling pathway, GO:0010252 - auxin homeostasis, GO:0050832 - defense response to fungus	TO:0000124 - flag leaf angle, TO:0000255 - sheath blight disease resistance, TO:0000227 - root length	
23472	SDI1	OsSDI1	SULPHUR-DEFICIENCY-INDUCIBLE 1	sulphur-deficiency-inducible 1, sulfur deficiency induced 1			3		 Tolerance and resistance - Stress tolerance	Os03g0165900	LOC_Os03g06970.1				GO:0042594 - response to starvation, GO:0009970 - cellular response to sulfate starvation	TO:0000007 - sulfur sensitivity	
23473	PI5-2	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-2, Pii, RMg22, RMg21	PYRICULARIA ORYZAE RESISTANCE 5-2	Pyricularia oryzae resistance 3, Magnaporthe grisea resistance-3, Blast resistance 3			9	resistant to several races of Pyricularia grisea. [RGN13:15]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Pi5 locus was previously reported to be linked to the RG788 on chromosome 4. Pi3(t) and Pi5(t) are the same resistance gene. Original line is Pai-Kan-Tao (Japonica). The two NB-LRR genes Pi5-1 and Pi5-2 are required for rice Pi5-mediated resistance to M. oryzae (Lee et al. 2009). EU869185 = Pi5-1, EU869186 = Pi5-2. AB820896 (Oryza sativa Japonica cv. Hitomebore). Nipponbare is known to lack Pii. 	 Tolerance and resistance - Disease resistance			GR:0060631 GR:0060632			GO:0043531 - ADP binding, GO:0009620 - response to fungus, GO:0006952 - defense response	TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance, TO:0000500 - leaf blast disease resistance, TO:0000502 - potassium chlorate resistance, TO:0000074 - blast disease	PO:0009025 - vascular leaf 
23474	_		_	Cd transporter			11			Os11g0485200	LOC_Os11g29490.1, LOC_Os11g29490.2, LOC_Os11g29490.3				GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0016021 - integral to membrane, GO:0006874 - cellular calcium ion homeostasis, GO:0070588 - calcium ion transmembrane transport, GO:0000166 - nucleotide binding, GO:0005388 - calcium-transporting ATPase activity		
23475	_		_	metal tolerance protein			1	TO:0006059: cadmium content trait.		Os01g0611300	LOC_Os01g42550.1						
23476	OR	Osor	ORANGE	Orange, orange-colored		Osor_t1, Osor_t2, Osor_t3, OC	2	the rice ortholog of the cauliflower or gene. GO:1904143: positive regulation of carotenoid biosynthetic process. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Coloration - Others	Os02g0651300	LOC_Os02g43500.1				GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0050821 - protein stabilization, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0016021 - integral to membrane, GO:0016117 - carotenoid biosynthetic process, GO:0016116 - carotenoid metabolic process, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0002695 - beta-carotene content, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content, TO:0000259 - heat tolerance, TO:0002701 - lutein content	PO:0025034 - leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009005 - root , PO:0005052 - plant callus , PO:0009010 - seed 
23477	DUF668-4	OsDUF668-4	DUF668 FAMILY MEMBER 4	DUF668 family member 4	DUF668 FAMILY MEMBER 4		3		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0270500	LOC_Os03g16390.1				GO:0010224 - response to UV-B, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000163 - auxin sensitivity, TO:0000074 - blast disease, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000601 - UV-B light sensitivity, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000167 - cytokinin sensitivity	PO:0000003 - whole plant 
23478	DUF668-2	OsDUF668-2	DUF668 FAMILY MEMBER 2	DUF668 family member 2	DUF668 FAMILY MEMBER 2		1		 Tolerance and resistance - Stress tolerance	Os01g0873900	LOC_Os01g65330.2, LOC_Os01g65330.1				GO:0009408 - response to heat, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress	TO:0000167 - cytokinin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0000003 - whole plant 
23479	DUF668-3	OsDUF668-3	DUF668 FAMILY MEMBER 3	DUF668 family member 3	DUF668 FAMILY MEMBER 3		2		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0551700	LOC_Os02g34650.1				GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0006970 - response to osmotic stress, GO:0010224 - response to UV-B, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009409 - response to cold	TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0000003 - whole plant 
23480	DUF668-1	OsDUF668-1	DUF668 FAMILY MEMBER 1	DUF668 family member 1	DUF668 FAMILY MEMBER 1		1		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0845100	LOC_Os01g62670.1				GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0030912 - response to deep water, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0010224 - response to UV-B, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0000163 - auxin sensitivity, TO:0000074 - blast disease, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000276 - drought tolerance	
23481	DUF668-5	OsDUF668-5	DUF668 FAMILY MEMBER 5	DUF668 family member 5	DUF668 FAMILY MEMBER 5		3		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0858600	LOC_Os03g64130.1				GO:0009409 - response to cold, GO:0009611 - response to wounding, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0010224 - response to UV-B, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0006970 - response to osmotic stress, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0030912 - response to deep water, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000601 - UV-B light sensitivity, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance	
23482	DUF668-6	OsDUF668-6	DUF668 FAMILY MEMBER 6	DUF668 family member 6	DUF668 FAMILY MEMBER 6		4		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0169500	LOC_Os04g08764.1				GO:0009611 - response to wounding, GO:0030912 - response to deep water, GO:0006970 - response to osmotic stress, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0050832 - defense response to fungus	TO:0000167 - cytokinin sensitivity, TO:0000524 - submergence tolerance, TO:0000074 - blast disease, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity	
23483	DUF668-7	OsDUF668-7	DUF668 FAMILY MEMBER 7	DUF668 family member 7	DUF668 FAMILY MEMBER 7		4		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0433600	LOC_Os04g35410.3, LOC_Os04g35410.2, LOC_Os04g35410.1				GO:0009408 - response to heat, GO:0030912 - response to deep water, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding	TO:0000095 - osmotic response sensitivity, TO:0000074 - blast disease, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	PO:0000003 - whole plant 
23484	DUF668-8	OsDUF668-8	DUF668 FAMILY MEMBER 8	DUF668 family member 8	DUF668 FAMILY MEMBER 8		5		 Tolerance and resistance - Stress tolerance	Os05g0430300	LOC_Os05g35530.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity	PO:0000003 - whole plant 
23485	DUF668-9	OsDUF668-9	DUF668 FAMILY MEMBER 9	DUF668 family member 9	DUF668 FAMILY MEMBER 9		5			Os05g0457600	LOC_Os05g38320.1						
23486	DUF668-10	OsDUF668-10	DUF668 FAMILY MEMBER 10	DUF668 family member 10	DUF668 FAMILY MEMBER 10		6		 Tolerance and resistance - Stress tolerance	Os06g0716000	LOC_Os06g50220.2, LOC_Os06g50220.1				GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance	PO:0000003 - whole plant 
23487	DUF668-11	OsDUF668-11	DUF668 FAMILY MEMBER 11	DUF668 family member 11	DUF668 FAMILY MEMBER 11		11		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0180100	LOC_Os11g07840.1				GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0010224 - response to UV-B	TO:0000524 - submergence tolerance, TO:0000095 - osmotic response sensitivity, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000601 - UV-B light sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0000003 - whole plant 
23488	DUF668-12	OsDUF668-12	DUF668 FAMILY MEMBER 12	DUF668 family member 12	DUF668 FAMILY MEMBER 12		12		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0146500	LOC_Os12g05180.1				GO:0009611 - response to wounding, GO:0006970 - response to osmotic stress, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0000524 - submergence tolerance, TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0000003 - whole plant 
23489	_	GLUB	_				3		 Biochemical character	Os03g0669300	LOC_Os03g46660.1				GO:0046658 - anchored to plasma membrane, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
23490	_	CAD	_				3		 Biochemical character	Os03g0101600	LOC_Os03g01190.1				GO:0034599 - cellular response to oxidative stress, GO:0003960 - NADPH:quinone reductase activity, GO:0017091 - AU-rich element binding, GO:0005737 - cytoplasm, GO:0005829 - cytosol		
23491	_	POT	_	POT protein		pot	10	peptide transporter (PTR) gene family. a member of the proton-dependent oligopeptide transport (POT) family of transporters. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os10g0469900	LOC_Os10g33170.1				GO:0009812 - flavonoid metabolic process, GO:0010208 - pollen wall assembly, GO:0009555 - pollen development, GO:0005771 - multivesicular body, GO:0015333 - peptide:hydrogen symporter activity, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity	TO:0000455 - seed set percent	PO:0025281 - pollen , PO:0001007 - pollen development stage 
23492	SLD	OsSLD	SPHINGOLIPID LCB DELTA8 DESATURASE	sphingolipid LCB delta8 desaturase, sphingolipid long-chain base delta8 desaturase	SPHINGOLIPID LCB DELTA8 DESATURASE		9		 Biochemical character	Os09g0338500	LOC_Os09g16920.1				GO:0006629 - lipid metabolic process, GO:0016021 - integral to membrane, GO:0016491 - oxidoreductase activity		
23493	PL3	OsPL3	PLUS3 DOMAIN-CONTAINING PROTEIN	PLUS3 domain-containing protein	PLUS3 DOMAIN-CONTAINING PROTEIN		1	a target gene for Osa-MIR528. GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os01g0775100	LOC_Os01g56780.3, LOC_Os01g56780.2, LOC_Os01g56780.1				GO:0016593 - Cdc73/Paf1 complex, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation	TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000557 - secondary branch number, TO:0000391 - seed size, TO:0000396 - grain yield, TO:0006032 - panicle size, TO:0000397 - grain size, TO:0000207 - plant height, TO:0000276 - drought tolerance	PO:0025034 - leaf 
23494	RIR1	OsLRR-RLK2, LRR-RLK2, OsRIR1	RICE IMMUNITY REPRESSOR 1	leucine-rich repeat and receptor-like kinase domain protein 2, Rice Immunity Repressor 1	RICE IMMUNITY REPRESSOR 1	rir1	12	an osa-miR159b target gene. GO:1900425: negative regulation of defense response to bacterium. GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance	Os12g0210400	LOC_Os12g10740.1				GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf 
23495	_	FBPase, OsFBPase, OsSBPase, SBPase	_	Fru-1, 6-bisphosphatase, sedoheptulose 1, 7-bisphosphatase			4	OsSBPase in Li et al. 2020.	 Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Vegetative organ - Culm,  Biochemical character,  Reproductive organ - Heading date	Os04g0234600	LOC_Os04g16680.1				GO:0009507 - chloroplast, GO:0019253 - reductive pentose-phosphate cycle, GO:0009658 - chloroplast organization, GO:0006094 - gluconeogenesis, GO:0005986 - sucrose biosynthetic process, GO:0006000 - fructose metabolic process, GO:0006002 - fructose 6-phosphate metabolic process, GO:0005737 - cytoplasm, GO:0005975 - carbohydrate metabolic process, GO:0016791 - phosphatase activity, GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity, GO:0030388 - fructose 1,6-bisphosphate metabolic process	TO:0000440 - grain number per plant, TO:0000326 - leaf color, TO:0001027 - net photosynthetic rate, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000316 - photosynthetic ability, TO:0002759 - grain number, TO:0000455 - seed set percent, TO:0000447 - filled grain number, TO:0000396 - grain yield, TO:0000137 - days to heading, TO:0000152 - panicle number, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000696 - starch content	PO:0025034 - leaf 
23496	ACT	OsACT	AGMATINE-COUMARIN-ACYLTRANSFERASE	agmatine-coumarin-acyltransferase	AGMATINE-COUMARIN-ACYLTRANSFERASE		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0682900	LOC_Os03g47860.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0009010 - seed , PO:0009066 - anther , PO:0007616 - flowering stage 
23497	CFM2	OsCFM2	_			oscfm2-1, oscfm2-2	4	CRM family protein, chloroplast RNA splicing and ribosome maturation (CRM) domain-containing protein, CRM domain protein.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	 Os04g0464800	LOC_Os04g39060.2, LOC_Os04g39060.1				GO:0000372 - Group I intron splicing, GO:0009532 - plastid stroma, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009658 - chloroplast organization, GO:0003723 - RNA binding, GO:0000373 - Group II intron splicing	TO:0002715 - chloroplast development trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000326 - leaf color	PO:0025034 - leaf , PO:0009047 - stem , PO:0009051 - spikelet 
23498	CFM3	OsCFM3	_				11	Q2R1U8. CRM family protein, chloroplast RNA splicing and ribosome maturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os11g0592400	LOC_Os11g37990.1				GO:0006397 - mRNA processing, GO:0009507 - chloroplast, GO:0003723 - RNA binding, GO:0000373 - Group II intron splicing, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009047 - stem , PO:0025034 - leaf , PO:0009051 - spikelet 
23499	CRS1	OsCRS1	_				8	Q6YYA3. CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os08g0360100	LOC_Os08g27150.1				GO:0006417 - regulation of translation, GO:0006397 - mRNA processing, GO:0003723 - RNA binding, GO:0000373 - Group II intron splicing, GO:0009651 - response to salt stress, GO:0009570 - chloroplast stroma, GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0025034 - leaf , PO:0009051 - spikelet 
23500	_		_				5	CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os05g0551900	LOC_Os05g47850.1				GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009047 - stem 
23501	_		_				9	CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os09g0363100	LOC_Os09g19850.1				GO:0009651 - response to salt stress, GO:0003723 - RNA binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009051 - spikelet 
23502	_		_				6	CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os06g0304500	LOC_Os06g20030.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0003723 - RNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009047 - stem 
23503	_		_				1	CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os01g0958400	LOC_Os01g72820.6, LOC_Os01g72820.5, LOC_Os01g72820.4, LOC_Os01g72820.3, LOC_Os01g72820.2, LOC_Os01g72820.1				GO:0003723 - RNA binding, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009051 - spikelet 
23504	_		_				4	CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os04g0492900	LOC_Os04g41550.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0003723 - RNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009051 - spikelet 
23505	_		_				5	CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os05g0145500	LOC_Os05g05300.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009047 - stem 
23506	_		_				8	Q0J7J7. CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os08g0188000	LOC_Os08g08860.1				GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0009409 - response to cold, GO:0005739 - mitochondrion, GO:0003723 - RNA binding, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009051 - spikelet , PO:0009047 - stem 
23507	_		_				8	Q6Z4U2. CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os08g0174900	LOC_Os08g07790.1				GO:0009414 - response to water deprivation, GO:0006397 - mRNA processing, GO:0008380 - RNA splicing, GO:0005739 - mitochondrion, GO:0009409 - response to cold, GO:0003723 - RNA binding, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009047 - stem 
23508	CAF2	OsCAF2	CRS2-ASSOCIATED FACTOR 2	CRS2-associated factor 2	CRS2-ASSOCIATED FACTOR 2	oscaf2	1	Q657G7. CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Coloration - Others,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os01g0323300	LOC_Os01g21990.1				GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0000373 - Group II intron splicing, GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0003723 - RNA binding, GO:0009409 - response to cold, GO:0009570 - chloroplast stroma	TO:0000496 - carotenoid content, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	PO:0009051 - spikelet , PO:0009047 - stem , PO:0025034 - leaf 
23509	_		_				10	CRM family protein, chloroplast RNA splicing and ribosome aturation (CRM) domain-containing protein, CRM domain protein.	 Tolerance and resistance - Stress tolerance	Os10g0512500	LOC_Os10g36860.1				GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0003723 - RNA binding	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009051 - spikelet 
23510	_		AAA-ATPASE 3	OsAAA-ATPase3, AAA-ATPase3	AAA-ATPASE 3		6		 Tolerance and resistance - Disease resistance	Os06g0697600	LOC_Os06g48250.1				GO:0009725 - response to hormone stimulus, GO:0005524 - ATP binding, GO:0009751 - response to salicylic acid stimulus, GO:0050832 - defense response to fungus	TO:0000401 - plant growth hormone sensitivity, TO:0000074 - blast disease	
23511	_		AAA-ATPASE 4	OsAAA-ATPase4, AAA-ATPase4	AAA-ATPASE 4		2		 Tolerance and resistance - Disease resistance	Os02g0697600	LOC_Os02g46990.1				GO:0007005 - mitochondrion organization, GO:0050832 - defense response to fungus, GO:0008270 - zinc ion binding, GO:0005524 - ATP binding, GO:0009735 - response to cytokinin stimulus, GO:0005739 - mitochondrion	TO:0000074 - blast disease, TO:0000167 - cytokinin sensitivity	
23512	_		AAA-ATPASE 5	OsAAA-ATPase5, AAA-ATPase5	AAA-ATPASE 5		2		 Tolerance and resistance - Disease resistance	Os02g0706500	LOC_Os02g47760.1				GO:0009735 - response to cytokinin stimulus, GO:0008270 - zinc ion binding, GO:0007005 - mitochondrion organization, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0050832 - defense response to fungus	TO:0000167 - cytokinin sensitivity, TO:0000074 - blast disease	
23513	_		AAA-ATPASE 6	OsAAA-ATPase6, AAA-ATPase6	AAA-ATPASE 6		7			Os07g0517600					GO:0005524 - ATP binding		
23514	SPP	OsSPP	STROMAL PROCESSING PEPTIDASE	stromal processing peptidase	STROMAL PROCESSING PEPTIDASE		6	Q69TY5.	 Biochemical character	Os06g0625400	LOC_Os06g41990.2, LOC_Os06g41990.1				GO:0008237 - metallopeptidase activity, GO:0046872 - metal ion binding, GO:0009570 - chloroplast stroma		
23515	PXLG1	OsPXLG1, XLG1, OsXLG1	PUTATIVE EXTRA-LARGE G PROTEIN 1	putative extra-large G protein 1, extra-large GTP-binding protein subunit 1	PUTATIVE EXTRA-LARGE G PROTEIN 1	pxlg1, Osxlg1-1, Osxlg1-2, Osxlg1-7, Osxlg1-8, Osxlg1-9	6	TO:0000847: panicle inflorescence morphology trait. GO:2000028: regulation of photoperiodism, flowering.	 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Reproductive organ - panicle,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm,  Vegetative organ - Root	Os06g0111400	LOC_Os06g02130.2, LOC_Os06g02130.1				GO:0031683 - G-protein beta/gamma-subunit binding, GO:0009266 - response to temperature stimulus, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0048573 - photoperiodism, flowering, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0005834 - heterotrimeric G-protein complex, GO:0005525 - GTP binding, GO:0007188 - G-protein signaling, coupled to cAMP nucleotide second messenger, GO:0003924 - GTPase activity, GO:0040008 - regulation of growth, GO:0001664 - G-protein-coupled receptor binding	TO:0002759 - grain number, TO:0000397 - grain size, TO:0006001 - salt tolerance, TO:0000014 - panicle weight, TO:0000207 - plant height, TO:0000592 - 1000-dehulled grain weight, TO:0000516 - relative root length, TO:0000074 - blast disease, TO:0000259 - heat tolerance, TO:0000432 - temperature response trait, TO:0000346 - tiller number, TO:0000152 - panicle number, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000181 - seed weight, TO:0000371 - yield trait, TO:0000137 - days to heading, TO:0000357 - growth and development trait, TO:0001034 - relative plant height, TO:0006032 - panicle size	
23516	PXLG2	OsPXLG2, XLG2, OsXLG2	PUTATIVE EXTRA-LARGE G PROTEIN 2	putative extra-large G protein 2, extra-large GTP-binding protein subunit 2	PUTATIVE EXTRA-LARGE G PROTEIN 2	pxlg2, pxlg2-1, pxlg2-2, Osxlg2-1, Osxlg2-3, Osxlg2- 5, Osxlg2-8, Osxlg2-10	11	GO:2000034: regulation of seed maturation. TO:0000847: panicle inflorescence morphology trait. GO:2000028: regulation of photoperiodism, flowering.	 Reproductive organ - panicle,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os11g0206700	LOC_Os11g10050.1				GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0010431 - seed maturation, GO:0005525 - GTP binding, GO:0031683 - G-protein beta/gamma-subunit binding, GO:0001664 - G-protein-coupled receptor binding, GO:0009408 - response to heat, GO:0003924 - GTPase activity, GO:0009266 - response to temperature stimulus, GO:0050832 - defense response to fungus, GO:0040008 - regulation of growth, GO:0048573 - photoperiodism, flowering, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0005834 - heterotrimeric G-protein complex, GO:0007188 - G-protein signaling, coupled to cAMP nucleotide second messenger	TO:0000040 - panicle length, TO:0000137 - days to heading, TO:0000592 - 1000-dehulled grain weight, TO:0006001 - salt tolerance, TO:0000455 - seed set percent, TO:0000259 - heat tolerance, TO:0000432 - temperature response trait, TO:0000346 - tiller number, TO:0000181 - seed weight, TO:0000207 - plant height, TO:0000014 - panicle weight, TO:0000734 - grain length, TO:0000074 - blast disease, TO:0000371 - yield trait, TO:0000397 - grain size, TO:0000447 - filled grain number, TO:0000152 - panicle number, TO:0006032 - panicle size, TO:0002759 - grain number, TO:0000653 - seed development trait, TO:0000357 - growth and development trait	PO:0001170 - seed development stage 
23517	PXLG3	OsPXLG3, XLG4, OsXLG4	PUTATIVE EXTRA-LARGE G PROTEIN 3	putative extra-large G protein 3, extra-large GTP-binding protein subunit 4	PUTATIVE EXTRA-LARGE G PROTEIN 3	pxlg3, Osxlg4-1, Osxlg4-2, Osxlg4-3, Osxlg4-5, Osxlg4-6, Osxlg4-7	12	XLG4 in Biswal et al. 2021. GO:2000034: regulation of seed maturation. TO:0000847: panicle inflorescence morphology trait. GO:2000028: regulation of photoperiodism, flowering.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os12g0593000	LOC_Os12g40190.1				GO:0009266 - response to temperature stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0001664 - G-protein-coupled receptor binding, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0007188 - G-protein signaling, coupled to cAMP nucleotide second messenger, GO:0048573 - photoperiodism, flowering, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0019001 - guanyl nucleotide binding, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0005834 - heterotrimeric G-protein complex, GO:0010431 - seed maturation, GO:0040008 - regulation of growth, GO:0050832 - defense response to fungus, GO:0031683 - G-protein beta/gamma-subunit binding	TO:0006032 - panicle size, TO:0002759 - grain number, TO:0001034 - relative plant height, TO:0000259 - heat tolerance, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000432 - temperature response trait, TO:0000074 - blast disease, TO:0000346 - tiller number, TO:0000181 - seed weight, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000653 - seed development trait, TO:0000371 - yield trait, TO:0000137 - days to heading, TO:0000397 - grain size, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000014 - panicle weight, TO:0000447 - filled grain number, TO:0000152 - panicle number	PO:0001170 - seed development stage 
23518	PXLG4	OsPXLG4, XLG3, OsXLG3	PUTATIVE EXTRA-LARGE G PROTEIN 4	putative extra-large G protein 4, extra-large GTP-binding protein subunit 3	PUTATIVE EXTRA-LARGE G PROTEIN 4	pxlg4	10	XLG3 in Biswal et al. 2021.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Heading date	Os10g0117800	LOC_Os10g02814.2, LOC_Os10g02814.1				GO:0009651 - response to salt stress, GO:0031683 - G-protein beta/gamma-subunit binding, GO:0009409 - response to cold, GO:0001664 - G-protein-coupled receptor binding, GO:0019001 - guanyl nucleotide binding, GO:0048573 - photoperiodism, flowering, GO:0007186 - G-protein coupled receptor protein signaling pathway, GO:0009414 - response to water deprivation, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0007188 - G-protein signaling, coupled to cAMP nucleotide second messenger, GO:0005834 - heterotrimeric G-protein complex	TO:0000276 - drought tolerance, TO:0000137 - days to heading, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
23519	EULS2	OsEULS2, OrysaEULS2, OSR40 g3, OSR40g3, R40g3	EUL-RELATED LECTIN S2	EUL-related lectin S2, Euonymus lectin S2	EUL-RELATED LECTIN S2		7	Q6Z4N4. Euonymus lectin (EUL) family.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os07g0684000	LOC_Os07g48500.1				GO:0002215 - defense response to nematode, GO:0009737 - response to abscisic acid stimulus, GO:0002229 - defense response to oomycetes, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0002213 - defense response to insect, GO:0030246 - carbohydrate binding	TO:0000276 - drought tolerance, TO:0000424 - brown planthopper resistance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000384 - nematode damage resistance	PO:0009009 - plant embryo 
23520	EULS3	OsEULS3, OrysaEULS3, r40c1, Osr40c1	EUL-RELATED LECTIN S3	EUL-related lectin S3, Euonymus lectin S3	EUL-RELATED LECTIN S3		1	Q6Z4N4. Euonymus lectin (EUL) family.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0104400	LOC_Os01g01450.2, LOC_Os01g01450.1				GO:0002229 - defense response to oomycetes, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009006 - shoot system , PO:0000034 - vascular system 
23521	EULD1A	OsEULD1a, EULD1a, OrysaEULD1A, OSR40 g2, OSR40g2, R40g2	EUL-RELATED LECTIN D1A	EUL-related lectin D1a, Euonymus lectin D1A	EUL-RELATED LECTIN D1A		7	Q6Z4N6. Euonymus lectin (EUL) family.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0683900	LOC_Os07g48490.4, LOC_Os07g48490.2				GO:0002229 - defense response to oomycetes, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0030246 - carbohydrate binding, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0000025 - root tip , PO:0009006 - shoot system , PO:0000034 - vascular system , PO:0009089 - endosperm , PO:0009009 - plant embryo 
23522	EULD1B	OsEULD1b, EULD1b, Osr40c1, r40c1, OSR40c1, OrysaEULD1B	EUL-RELATED LECTIN D1B	EUL-related lectin D1b, Euonymus lectin D1B, R40 family of lectin protein C1, OsR40 protein C1	EUL-RELATED LECTIN D1B		3	Q10M12. Euonymus lectin (EUL) family.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0327600	LOC_Os03g21040.3, LOC_Os03g21040.2				GO:0009737 - response to abscisic acid stimulus, GO:0030246 - carbohydrate binding, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0002213 - defense response to insect, GO:0042742 - defense response to bacterium, GO:0009753 - response to jasmonic acid stimulus, GO:0006970 - response to osmotic stress, GO:0005634 - nucleus, GO:0002229 - defense response to oomycetes	TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000424 - brown planthopper resistance, TO:0000095 - osmotic response sensitivity	PO:0000025 - root tip , PO:0009009 - plant embryo , PO:0009005 - root , PO:0020121 - lateral root , PO:0009089 - endosperm 
23523	EULD2	OsEULD2, EULD2, OrysaEULD2, OSR40c2, R40c2	EUL-RELATED LECTIN D2	EUL-related lectin D2, Euonymus lectin D2	EUL-RELATED LECTIN D2		7	Euonymus lectin (EUL) family.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0683600	LOC_Os07g48460.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
23524	AP38	OsAP38	ASPARTIC PROTEASE 38	aspartic protease 38	ASPARTIC PROTEASE 38		4		 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os04g0596200 	LOC_Os04g50850.2, LOC_Os04g50850.1				GO:0048653 - anther development, GO:0006508 - proteolysis, GO:0030163 - protein catabolic process, GO:0004190 - aspartic-type endopeptidase activity		PO:0001004 - anther development stage , PO:0009066 - anther 
23525	_		VACUOLAR H+ -ATPASE	vacuolar H+ -ATPase, OsV-ATPase, V-ATPase	VACUOLAR H+ -ATPASE		11	Q0IUB5.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0169900	LOC_Os11g06890.2, LOC_Os11g06890.1				GO:0016021 - integral to membrane, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0005774 - vacuolar membrane, GO:0033179 - proton-transporting V-type ATPase, V0 domain, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009005 - root , PO:0025034 - leaf 
23526	ROK	OsROK	_	outward K+-rectifying channel, K+ leakage channel			1	AB248822. GO:0071805: potassium ion transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0696100					GO:0030322 - stabilization of membrane potential, GO:0009651 - response to salt stress, GO:0009705 - plant-type vacuole membrane, GO:0022841 - potassium ion leak channel activity, GO:0005887 - integral to plasma membrane	TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009005 - root 
23527	HIPP50	OsHMP1, HMP1, OsHMP01, OsHIPP50, OsaHIP50, HIP50	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 50	Heavy metal-associated protein 1, heavy-metal-associated isoprenylated plant protein 50	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 50		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0125600	LOC_Os01g03490.1				GO:0030001 - metal ion transport, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0010288 - response to lead ion	TO:0000021 - copper sensitivity, TO:0000351 - zinc sensitivity	
23528	HIPP38	OsHMP2, HMP2, OsHMP02, OsHIPP38, OsaHIP38, HIP38	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 38	Heavy metal-associated protein 2, heavy-metal-associated isoprenylated plant protein 38	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 38		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0309800	LOC_Os01g20830.1				GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0030001 - metal ion transport		
23529	HIPP43	OsHMP3, HMP3, OsHMP03, OsHIPP43, OsaHIP43, HIP43	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 43	Heavy metal-associated protein 3, heavy-metal-associated isoprenylated plant protein 43	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 43		1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0507700	LOC_Os01g32330.1				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0043067 - regulation of programmed cell death, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23530	HMP4	OsHMP4, OsHMP04	HEAVY METAL-ASSOCIATED PROTEIN 4	Heavy metal-associated protein 4	HEAVY METAL-ASSOCIATED PROTEIN 4		1		 Biochemical character	Os01g0595201	LOC_Os01g41200.1				GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0005634 - nucleus, GO:0030001 - metal ion transport		
23531	HMP5	OsHMP5, OsHMP05	HEAVY METAL-ASSOCIATED PROTEIN 5	Heavy metal-associated protein 5	HEAVY METAL-ASSOCIATED PROTEIN 5		1		 Biochemical character	Os01g0719600	LOC_Os01g52160.1				GO:0046872 - metal ion binding, GO:0030001 - metal ion transport, GO:0005634 - nucleus		
23532	HIPP47	OsHMP6, HMP6, OsHMP06, OsHIPP47, OsaHIP47, HIP47	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 47	Heavy metal-associated protein 6, heavy-metal-associated isoprenylated plant protein 47	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 47		1		 Biochemical character	Os01g0758000	LOC_Os01g55320.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0030001 - metal ion transport		
23533	HMP8	OsHMP8, OsHMP08	HEAVY METAL-ASSOCIATED PROTEIN 8	Heavy metal-associated protein 8	HEAVY METAL-ASSOCIATED PROTEIN 8		1		 Biochemical character	Os01g0927300	LOC_Os01g70240.2, LOC_Os01g70240.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0030001 - metal ion transport		
23534	HIPP56	OsHMP9, HMP9, OsHMP09, OsHIPP56, OsaHIP56, HIP56	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 56	Heavy metal-associated protein 9, heavy-metal-associated isoprenylated plant protein 56	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 56		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0933200	LOC_Os01g70710.2, LOC_Os01g70710.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0046688 - response to copper ion, GO:0030001 - metal ion transport, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0010288 - response to lead ion	TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	
23535	HPP1	OsHMP10, HMP10, OsHPP1, OsaHPP01, HPP01	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 1	Heavy metal-associated protein 10, heavy-metal-associated plant protein 1	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 1		1		 Biochemical character	Os01g0976300	LOC_Os01g74490.1				GO:0030001 - metal ion transport, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
23536	HIPP33	OsHMP13, HMP13, OsHIPP33, OsaHIP33, HIP33	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33	Heavy metal-associated protein 13, heavy-metal-associated isoprenylated plant protein 33	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33		2		 Biochemical character	Os02g0510600	LOC_Os02g30650.1, LOC_Os02g30650.2				GO:0030001 - metal ion transport, GO:0016020 - membrane, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
23537	HPP4	OsHMP15, HMP15, OsHPP4, OsaHPP04, HPP04	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 4	Heavy metal-associated protein 15, heavy-metal-associated plant protein 4	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 4		2	GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000071: regulation of defense response by callose deposition.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance	Os02g0584800	LOC_Os02g37300.1				GO:0002237 - response to molecule of bacterial origin, GO:0052542 - callose deposition during defense response, GO:0002679 - respiratory burst during defense response, GO:0050832 - defense response to fungus, GO:0009507 - chloroplast, GO:0046872 - metal ion binding, GO:0030001 - metal ion transport, GO:0002215 - defense response to nematode, GO:0050777 - negative regulation of immune response	TO:0000384 - nematode damage resistance, TO:0000074 - blast disease	
23538	HIPP31	OsHMP16, HMP16, OsHIPP31, OsaHIP31, HIP31	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 31	Heavy metal-associated protein 16, heavy-metal-associated isoprenylated plant protein 31	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 31		2		 Biochemical character	Os02g0819000	LOC_Os02g57360.1				GO:0005634 - nucleus, GO:0030001 - metal ion transport, GO:0046872 - metal ion binding		
23539	HIPP39	OsHMP17, HMP17, OsHIPP39, OsaHIP39, HIP39	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 39	Heavy metal-associated protein 17, heavy-metal-associated isoprenylated plant protein 39	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 39		3		 Biochemical character	Os03g0120400	LOC_Os03g02860.1				GO:0009507 - chloroplast, GO:0030001 - metal ion transport, GO:0046872 - metal ion binding		
23540	HIPP36	OsHMP18, HMP18, OsHIPP36, OsaHIP36, HIP36	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 36	Heavy metal-associated protein 18, heavy-metal-associated isoprenylated plant protein 36	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 36		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0152000	LOC_Os03g05750.1				GO:0010288 - response to lead ion, GO:0010043 - response to zinc ion, GO:0046686 - response to cadmium ion, GO:0030001 - metal ion transport, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0005634 - nucleus	TO:0000021 - copper sensitivity, TO:0000351 - zinc sensitivity	
23541	HIPP41	OsHMP19, HMP19, OsHIPP41, OsaHIP41, HIP41	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 41	Heavy metal-associated protein 19, heavy-metal-associated isoprenylated plant protein 41	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 41		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0156600	LOC_Os03g06080.1				GO:0009507 - chloroplast, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009409 - response to cold, GO:0030001 - metal ion transport, GO:0046686 - response to cadmium ion	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0005052 - plant callus 
23542	HIPP45	OsHMP21, HMP21, OsHIPP45, OsaHIP45, HIP45	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 45	Heavy metal-associated protein 21, heavy-metal-associated isoprenylated plant protein 45	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 45		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0383900	LOC_Os03g26650.2, LOC_Os03g26650.1				GO:0030001 - metal ion transport, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0046872 - metal ion binding	TO:0000303 - cold tolerance	
23543	HPP5	OsHMP22, HMP22, OsHPP5, OsaHPP05, HPP05	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 5	Heavy metal-associated protein 22, heavy-metal-associated plant protein 5	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 5		3		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0819400	LOC_Os03g60480.1				GO:0005634 - nucleus, GO:0016020 - membrane, GO:0046686 - response to cadmium ion, GO:0030001 - metal ion transport, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0010288 - response to lead ion, GO:0010043 - response to zinc ion	TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	
23544	HIPP34	OsHMP23, HMP23, OsHIPP34, OsaHIP34, HIP34	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 34	Heavy metal-associated protein 23, heavy-metal-associated isoprenylated plant protein 34	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 34		3		 Biochemical character	Os03g0861400	LOC_Os03g64340.1				GO:0030001 - metal ion transport, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
23545	HIPP42	OsHMP24, HMP24, OsHIPP42, OsaHIP42, HIP42	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 42	Heavy metal-associated protein 24, heavy-metal-associated isoprenylated plant protein 42	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 42		4		 Biochemical character	Os04g0244800	LOC_Os04g17100.1, LOC_Os04g17100.2				GO:0009507 - chloroplast, GO:0030001 - metal ion transport, GO:0046872 - metal ion binding		
23546	HIPP29	OsHMP25, HMP25, OsHIPP29, OsaHIP29, HIP29	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 29	Heavy metal-associated protein 25, heavy-metal-associated isoprenylated plant protein 29	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 29		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0390100	LOC_Os04g32030.1				GO:0010043 - response to zinc ion, GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion, GO:0030001 - metal ion transport, GO:0046688 - response to copper ion, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0016020 - membrane	TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	
23547	HIPP30	OsHMP28, HMP28, OsHIPP30, OsaHIP30, HIP30	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 30	Heavy metal-associated protein 28, heavy-metal-associated isoprenylated plant protein 30	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 30		4		 Biochemical character	Os04g0590100	LOC_Os04g50020.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0030001 - metal ion transport		PO:0009005 - root 
23548	HIPP22	OsHMP29, HMP29, OsHIPP22, OsaHIP22, HIP22	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 22	Heavy metal-associated protein 29, heavy-metal-associated isoprenylated plant protein 22	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 22		4		 Biochemical character	Os04g0661100	LOC_Os04g56570.1				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding, GO:0005634 - nucleus		PO:0025121 - pollen sperm cell 
23549	HIPP57	OsHMP30, HMP30, OsHIPP57, OsaHIP57, HIP57	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 57	Heavy metal-associated protein 30, heavy-metal-associated isoprenylated plant protein 57	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 57		5		 Biochemical character	Os05g0368600	LOC_Os05g30570.1				GO:0046872 - metal ion binding, GO:0030001 - metal ion transport, GO:0005634 - nucleus		
23550	HMP31	OsHMP31	HEAVY METAL-ASSOCIATED PROTEIN 31	Heavy metal-associated protein 31	HEAVY METAL-ASSOCIATED PROTEIN 31		5		 Biochemical character	Os05g0534500	LOC_Os05g45820.1				GO:0005634 - nucleus, GO:0030001 - metal ion transport, GO:0046872 - metal ion binding		
23551	HIPP48	OsHMP32, HMP32, OsHIPP48, OsHIPP48, OsaHIP48, HIP48	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 48	Heavy metal-associated protein 32, heavy-metal-associated isoprenylated plant protein 48	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 48		6		 Biochemical character	Os06g0542300	LOC_Os06g35060.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0030001 - metal ion transport		PO:0009005 - root 
23552	HIPP54	OsHMP36, HMP36, OsHIPP54, OsaHIP54, HIP54	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 54	Heavy metal-associated protein 36, heavy-metal-associated isoprenylated plant protein 54	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 54		7		 Biochemical character	Os07g0671400	LOC_Os07g47480.2, LOC_Os07g47480.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0030001 - metal ion transport		PO:0009005 - root 
23553	HIPP59	OsHMP38, HMP38, OsHIPP59, OsaHIP59, HIP59	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 59	Heavy metal-associated protein 38, heavy-metal-associated isoprenylated plant protein 59	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 59		8		 Biochemical character	Os08g0205500	LOC_Os08g10490.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0030001 - metal ion transport		
23554	HIPP46	OsHMP39, HMP39, OsHIPP46, OsaHIP46, HIP46	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 46	Heavy metal-associated protein 39, heavy-metal-associated isoprenylated plant protein 46	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 46		8		 Biochemical character	Os08g0403300	LOC_Os08g31140.1				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding, GO:0009507 - chloroplast		
23555	HPP7	OsHMP40, HMP40, OsHPP7, OsaHPP07, HPP07	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 7	Heavy metal-associated protein 40, heavy-metal-associated plant protein 7	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 7		8		 Biochemical character	Os08g0405700	LOC_Os08g31340.1				GO:0030001 - metal ion transport, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
23556	HMP41	OsHMP41	HEAVY METAL-ASSOCIATED PROTEIN 41	Heavy metal-associated protein 41	HEAVY METAL-ASSOCIATED PROTEIN 41		9			Os09g0549600	LOC_Os09g37730.1				GO:0005634 - nucleus		
23557	HIPP28	OsHMP42, HMP42, OsHIPP28, OsaHIP28, HIP28	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 28	Heavy metal-associated protein 42, heavy-metal-associated isoprenylated plant protein 28	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 28		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0209700	LOC_Os10g14870.1				GO:0046686 - response to cadmium ion, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0030001 - metal ion transport		PO:0025034 - leaf 
23558	HIPP35	OsHMP43, HMP43, OsHIPP35, OsaHIP35, HIP35	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 35	Heavy metal-associated protein 43, heavy-metal-associated isoprenylated plant protein 35	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 35		10	AY224486.	 Tolerance and resistance - Stress tolerance	Os10g0440500	LOC_Os10g30450.1				GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0010043 - response to zinc ion, GO:0010288 - response to lead ion, GO:0005634 - nucleus	TO:0000351 - zinc sensitivity, TO:0000021 - copper sensitivity	
23559	HIPP40	OsHMP44, HMP44, OsHIPP40, OsaHIP40, HIP40	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 40	Heavy metal-associated protein 44, heavy-metal-associated isoprenylated plant protein 40	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 40		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0537400	LOC_Os10g39210.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0030001 - metal ion transport, GO:0046872 - metal ion binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009030 - carpel 
23560	HIPP51	OsHMP45, HMP45, OsHIPP51, OsaHIP51, HIP51	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 51	Heavy metal-associated protein 45, heavy-metal-associated isoprenylated plant protein 51	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 51		11		 Biochemical character	Os11g0147500	LOC_Os11g05010.3, LOC_Os11g05010.2, LOC_Os11g05010.1				GO:0030001 - metal ion transport, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
23561	FYVE6	OsFYVE06, FYVE06, OsFYVE6	FYVE DOMAIN-CONTAINING PROTEIN 06	FYVE Domain-containing protein 06	FYVE DOMAIN-CONTAINING PROTEIN 06		3		 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0399532	LOC_Os03g28140.1				GO:0042742 - defense response to bacterium, GO:0046854 - phosphoinositide phosphorylation, GO:0005524 - ATP binding, GO:0010008 - endosome membrane, GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity	TO:0000175 - bacterial blight disease resistance	
23562	_		_				6		 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0259000	LOC_Os06g14750.1				GO:0042742 - defense response to bacterium, GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity, GO:0046854 - phosphoinositide phosphorylation, GO:0005524 - ATP binding, GO:0010008 - endosome membrane	TO:0000175 - bacterial blight disease resistance	
23563	_		_				8		 Biochemical character,  Tolerance and resistance - Disease resistance	Os08g0104700	LOC_Os08g01390.1				GO:0046854 - phosphoinositide phosphorylation, GO:0005524 - ATP binding, GO:0010008 - endosome membrane, GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity, GO:0016307 - phosphatidylinositol phosphate kinase activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
23564	FYVE19	OsFYVE19	FYVE DOMAIN-CONTAINING PROTEIN 19	FYVE Domain-containing protein 19	FYVE DOMAIN-CONTAINING PROTEIN 19		8		 Tolerance and resistance - Disease resistance,  Biochemical character	Os08g0450700/Os08g0450800	LOC_Os08g34950.1				GO:0042742 - defense response to bacterium, GO:0010008 - endosome membrane, GO:0016307 - phosphatidylinositol phosphate kinase activity, GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity, GO:0005524 - ATP binding, GO:0046854 - phosphoinositide phosphorylation	TO:0000175 - bacterial blight disease resistance	
23565	_		_				9		 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0402300	LOC_Os09g23740.1				GO:0042742 - defense response to bacterium, GO:0016307 - phosphatidylinositol phosphate kinase activity, GO:0010008 - endosome membrane, GO:0046854 - phosphoinositide phosphorylation, GO:0005524 - ATP binding, GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity	TO:0000175 - bacterial blight disease resistance	
23566	_		_				12		 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0236700	LOC_Os12g13440.2, LOC_Os12g13440.1				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0046854 - phosphoinositide phosphorylation, GO:0010008 - endosome membrane, GO:0016307 - phosphatidylinositol phosphate kinase activity, GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity	TO:0000175 - bacterial blight disease resistance	
23567	_		_				6	Similar to myosin heavy chain.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0488200	LOC_Os06g29350.1				GO:0051015 - actin filament binding, GO:0030898 - actin-dependent ATPase activity, GO:0007015 - actin filament organization, GO:0030050 - vesicle transport along actin filament, GO:0042742 - defense response to bacterium, GO:0031982 - vesicle, GO:0003779 - actin binding, GO:0003774 - motor activity, GO:0005524 - ATP binding, GO:0015629 - actin cytoskeleton, GO:0016459 - myosin complex, GO:0005737 - cytoplasm, GO:0000146 - microfilament motor activity	TO:0000175 - bacterial blight disease resistance	
23568	_		_				3		 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0686300	LOC_Os03g48140.1				GO:0051015 - actin filament binding, GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0003779 - actin binding, GO:0003774 - motor activity, GO:0031982 - vesicle, GO:0005737 - cytoplasm, GO:0016459 - myosin complex, GO:0015629 - actin cytoskeleton, GO:0030050 - vesicle transport along actin filament, GO:0007015 - actin filament organization, GO:0000146 - microfilament motor activity, GO:0030898 - actin-dependent ATPase activity	TO:0000175 - bacterial blight disease resistance	
23569	_		_				1		 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0713900	LOC_Os01g51634.1				GO:0016459 - myosin complex, GO:0042742 - defense response to bacterium, GO:0003779 - actin binding, GO:0005524 - ATP binding, GO:0003774 - motor activity	TO:0000175 - bacterial blight disease resistance	
23570	_		_				10		 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0339400	LOC_Os10g19860.1				GO:0030898 - actin-dependent ATPase activity, GO:0030050 - vesicle transport along actin filament, GO:0007015 - actin filament organization, GO:0042742 - defense response to bacterium, GO:0000146 - microfilament motor activity, GO:0051015 - actin filament binding, GO:0015629 - actin cytoskeleton, GO:0005737 - cytoplasm, GO:0031982 - vesicle	TO:0000175 - bacterial blight disease resistance	
23571	_	HSP20	_	HSP member			6	Q652V8. regulated by two miRNAs including osa-miR528-5p and osa-miR5493.	 Tolerance and resistance - Stress tolerance	Os06g0253100	LOC_Os06g14240.1				GO:0042542 - response to hydrogen peroxide, GO:0009408 - response to heat, GO:0006457 - protein folding, GO:0051259 - protein oligomerization, GO:0046686 - response to cadmium ion, GO:0043621 - protein self-association, GO:0051082 - unfolded protein binding, GO:0005777 - peroxisome, GO:0009651 - response to salt stress, GO:0000302 - response to reactive oxygen species		
23572	HSP21.9	hsp20, OsHSP21.9	HEAT SHOCK PROTEIN 21.9		HEAT SHOCK PROTEIN 21.9		11	Q53M11.	 Tolerance and resistance - Stress tolerance	Os11g0244200	LOC_Os11g13980.1				GO:0005783 - endoplasmic reticulum, GO:0006457 - protein folding, GO:0051259 - protein oligomerization, GO:0043621 - protein self-association, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0000302 - response to reactive oxygen species, GO:0009408 - response to heat, GO:0051082 - unfolded protein binding	TO:0000259 - heat tolerance	
23573	HSP22A	hsp20, HSP22a, OsHSP22a, HSP23.2, OsHSP23.2	HEAT SHOCK PROTEIN 22A	heat shock protein 22a	HEAT SHOCK PROTEIN 22A		4	Q7XUW5. HSP23.2 in Cao et al. 2024.	 Tolerance and resistance - Stress tolerance	Os04g0445100	LOC_Os04g36750.1				GO:0009408 - response to heat, GO:0006457 - protein folding, GO:0051082 - unfolded protein binding, GO:0051259 - protein oligomerization, GO:0005783 - endoplasmic reticulum, GO:0009651 - response to salt stress, GO:0043621 - protein self-association, GO:0000302 - response to reactive oxygen species, GO:0042542 - response to hydrogen peroxide	TO:0000259 - heat tolerance	
23574	BAG6	OsBAG6	BCL-2-ASSOCIATED ATHANOGENE 6	Bcl-2-associated athanogene 6	BCL-2-ASSOCIATED ATHANOGENE 6		2		 Tolerance and resistance - Stress tolerance	Os02g0259900	LOC_Os02g15930.1				GO:0009408 - response to heat, GO:0009506 - plasmodesma, GO:0006457 - protein folding	TO:0000259 - heat tolerance	
23575	_		_				11		 Tolerance and resistance - Stress tolerance	Os11g0149200	LOC_Os11g05170.1				GO:0009408 - response to heat	TO:0000259 - heat tolerance	
23576	_		_				11		 Tolerance and resistance - Stress tolerance	Os11g0533400	LOC_Os11g32890.1				GO:0009408 - response to heat	TO:0000259 - heat tolerance	
23577	BHT	OsBHT, OsHsp20L, Hsp20L	BOOTING STAGE HEAT TOLERANCE	calcyclin-binding protein, Booting stage Heat Tolerance, booting stage high-temperature tolerance, small heat shock protein 20-like	SMALL HEAT SHOCK PROTEIN 20-LIKE	Osbht, Osbht-ko, oshsp20l	1	GO:0044548: S100 protein binding. GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0757500	LOC_Os01g55270.1				GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0015631 - tubulin binding, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0031625 - ubiquitin protein ligase binding	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	
23578	_		_				1		 Tolerance and resistance - Stress tolerance	Os01g0283300	LOC_Os01g18080.1				GO:0009408 - response to heat	TO:0000259 - heat tolerance	
23579	NMCP1	OsNMCP1	NUCLEAR MATRIX CONSTITUENT PROTEIN 1	Nuclear Matrix Constituent Protein 1	NUCLEAR MATRIX CONSTITUENT PROTEIN 1	osnmcp1-1	1	GO:2000280: regulation of root development.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0767000	LOC_Os01g56140.1				GO:0034399 - nuclear periphery, GO:0009414 - response to water deprivation, GO:0048364 - root development, GO:0006997 - nucleus organization, GO:0005634 - nucleus	TO:0000306 - root thickness, TO:0000656 - root development trait, TO:0000043 - root anatomy and morphology trait, TO:0000276 - drought tolerance	PO:0007520 - root development stage 
23580	FBN1	OsFBN1	FIBRILLIN 1	fibrillin 1	FIBRILLIN 1		9	Q6K439. GO:0080177: plastoglobule organization.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os09g0133600	LOC_Os09g04790.1				GO:0006629 - lipid metabolic process, GO:0009408 - response to heat, GO:0009507 - chloroplast, GO:0005504 - fatty acid binding	TO:0000152 - panicle number, TO:0000346 - tiller number, TO:0000448 - filled grain percentage, TO:0002668 - jasmonic acid content, TO:0000259 - heat tolerance	
23581	LIN1	OsLIN1	LONG GRAIN 1			lin1	6	PO:0030123: panicle inflorescence.	 Seed - Morphological traits,  Character as QTL - Yield and productivity	Os06g0675200	LOC_Os06g46250.1				GO:0048316 - seed development	TO:0000734 - grain length, TO:0000590 - grain weight	PO:0001170 - seed development stage 
23582	BSR2	OsBSR2, CYP78A15, OsCYP78A15	BROAD-SPECTRUM RESISTANCE 2	BROAD-SPECTRUM RESISTANCE2, Cytochrome P450 78A15	CYTOCHROME P450 78A15		8		 Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os08g0547300	LOC_Os08g43390.1				GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0050832 - defense response to fungus, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0080112 - seed growth, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding	TO:0000391 - seed size, TO:0000146 - seed length, TO:0002600 - flower organ size, TO:0000650 - lemma length, TO:0002610 - pistil length, TO:0000734 - grain length, TO:0000531 - anther length, TO:0000255 - sheath blight disease resistance, TO:0000360 - leaf elongation rate, TO:0020033 - glume length, TO:0000653 - seed development trait, TO:0000420 - fertility related trait	PO:0009005 - root , PO:0009030 - carpel , PO:0009037 - lemma , PO:0025034 - leaf , PO:0009049 - inflorescence 
23583	CHR721	OsCHR721, SMARCAL1, OsSMARCAL1	CHROMATIN REMODELING FACTOR 721	chromatin remodeling factor 721	CHROMATIN REMODELING FACTOR 721	chr721	7	GO:0036310: annealing helicase activity. GO:0036292: DNA rewinding. GO:0061458: reproductive system development. GO:0140658: ATP-dependent chromatin remodeler activity. GO:0036310: ATP-dependent DNA/DNA annealing activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Sterility	Os07g0636200	LOC_Os07g44210.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0043596 - nuclear replication fork, GO:0048478 - replication fork protection, GO:0031297 - replication fork processing, GO:0006281 - DNA repair, GO:0006974 - response to DNA damage stimulus, GO:0005634 - nucleus, GO:0006338 - chromatin remodeling, GO:0050832 - defense response to fungus, GO:0009554 - megasporogenesis, GO:0009555 - pollen development, GO:0003678 - DNA helicase activity, GO:0007135 - meiosis II, GO:0005524 - ATP binding, GO:0008094 - DNA-dependent ATPase activity	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000485 - sterility related trait	PO:0001007 - pollen development stage , PO:0009051 - spikelet 
23584	NSUN2	OsNSUN2	NOP2/SUN DOMAIN FAMILY MEMBER 2	NOP/SUN family protein 2, NOP2/Sun domain family member 2, NOP2/ Sun RNA methyltransferase family member 2	NOP2/SUN DOMAIN FAMILY MEMBER 2	osnsun2, osnsun2-1, osnsun2-3, osnsun2-4, osnsun2-5	9		 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os09g0471900	LOC_Os09g29630.1				GO:0010286 - heat acclimation, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0080009 - mRNA methylation, GO:0008168 - methyltransferase activity, GO:0003723 - RNA binding, GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity, GO:0001510 - RNA methylation, GO:0009408 - response to heat, GO:0009416 - response to light stimulus	TO:0000227 - root length, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000075 - light sensitivity, TO:0000063 - mimic response, TO:0000316 - photosynthetic ability, TO:0000605 - hydrogen peroxide content	PO:0000037 - shoot apex 
23585	INP1	OsINP1	INAPERTURATE POLLEN 1	INAPERTURATE POLLEN1		Osinp1	2	GO:0062075: pollen aperture formation.		Os02g0661300	LOC_Os02g44250.1				GO:0009846 - pollen germination, GO:0009555 - pollen development, GO:0006351 - transcription, DNA-dependent, GO:0010208 - pollen wall assembly, GO:0043565 - sequence-specific DNA binding		PO:0001007 - pollen development stage 
23586	_	OsSLC1, SLC1	SEEDLING-LETHAL CHLOROSIS 1	seedling-lethal chlorosis 1		slc1	6	TO:0006060: leaf chlorosis.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os06g0710800	LOC_Os06g49670.2, LOC_Os06g49670.1				GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0000373 - Group II intron splicing, GO:0015979 - photosynthesis	TO:0001027 - net photosynthetic rate, TO:0000522 - stomatal conductance, TO:0001018 - transpiration rate, TO:0000496 - carotenoid content, TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem 
23587	EHD6	OML4, OsML4, ML4, OsEHD6	EARLY HEADING DATE 6	MEI2-LIKE PROTEIN4, LARGE1, LARGE 1, EARLY HEADING DATE6	MEI2-LIKE PROTEIN 4	ehd6, ehd6-cr1, ehd6-cr2	2	Q64M78. an RNA recognition motif (RRM)-containing RNA binding protein. PO:0030123: panicle inflorescence. GO:0036464: cytoplasmic ribonucleoprotein granule. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Reproductive organ - Heading date	Os02g0517531	LOC_Os02g31290.2, LOC_Os02g31290.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0030308 - negative regulation of cell growth, GO:0003676 - nucleic acid binding, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0048576 - positive regulation of short-day photoperiodism, flowering, GO:0043232 - intracellular non-membrane-bounded organelle, GO:0005737 - cytoplasm, GO:0003723 - RNA binding	TO:0000137 - days to heading, TO:0000207 - plant height, TO:0002759 - grain number, TO:0000382 - 1000-seed weight, TO:0000590 - grain weight, TO:0000734 - grain length, TO:0000391 - seed size, TO:0000397 - grain size	PO:0009010 - seed 
23588	PDD	OsPDD, TCD8, OsTCD8	PLEIOTROPIC DEVELOPMENTAL DEFECTS	thermo-sensitive chlorophyll-deficient mutant 8		PDD-OL, pdd-1, pdd-2, pdd-3, pdd-4, pdd-5, tcd8	8	a Multi-Domain GTPase. GO:1900865: chloroplast RNA modification. GO:0099402: plant organ development.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os08g0407000	LOC_Os08g31460.1				GO:0005525 - GTP binding, GO:0005829 - cytosol, GO:0006400 - tRNA modification, GO:0009299 - mRNA transcription, GO:0002098 - tRNA wobble uridine modification, GO:0042793 - transcription from plastid promoter, GO:0009657 - plastid organization, GO:0009409 - response to cold, GO:0009658 - chloroplast organization, GO:0005737 - cytoplasm, GO:0003924 - GTPase activity, GO:0009507 - chloroplast, GO:0030488 - tRNA methylation	TO:0000495 - chlorophyll content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000326 - leaf color, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0001016 - relative chlorophyll content	PO:0025034 - leaf 
23589	SS	OsXYN1, OsXyn1, XYN1, OsSS, OsMORE1m, MORE1m	SLIM STEM	slim stem, xylanase-like protein 1, Magnaporthe oryzae resistance 1m	XYLANASE-LIKE PROTEIN 1	ss1, ss2	3	glycoside hydrolase 10 (GH10) family. GO:0099402: plant organ development.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os03g0672900	LOC_Os03g47010.1				GO:0040007 - growth, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0009664 - plant-type cell wall organization, GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0052543 - callose deposition in cell wall, GO:0050832 - defense response to fungus, GO:0045493 - xylan catabolic process	TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000085 - leaf rolling, TO:0002667 - abscisic acid content, TO:0001035 - stem width, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
23591	_		_	Stvbi paralog			12	PO:0030123: panicle inflorescence.		Os12g0477700	LOC_Os12g29350.1						
23592	_	ST01	_	Stvbi paralog			11	PO:0030123: panicle inflorescence.	 Vegetative organ - Culm	Os11g0514100	LOC_Os11g31500.1					TO:0020033 - glume length, TO:0000346 - tiller number	
23594	WAKL21.2 	OsWAKL21.2	WALL-ASSOCIATED KINASE-LIKE 21	WALL-ASSOCIATED KINASE-LIKE21	WALL-ASSOCIATED KINASE-LIKE 21		12		 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0595800	LOC_Os12g40419.3, LOC_Os12g40419.2, LOC_Os12g40419.1				GO:0030247 - polysaccharide binding, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0050778 - positive regulation of immune response, GO:0004383 - guanylate cyclase activity, GO:0002237 - response to molecule of bacterial origin, GO:0007166 - cell surface receptor linked signal transduction, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity	TO:0000175 - bacterial blight disease resistance	
23595	RBGD3	OsRBGD3	RNA-BINDING GLYCINE-RICH PROTEIN 3	RNA-binding glycine-rich protein 3	RNA-BINDING GLYCINE-RICH PROTEIN 3		8	a class D glycine-rich RNA recognition motif (RRM) containing protein. GO:1990904: ribonucleoprotein complex.	 Reproductive organ - Heading date,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os08g0492100	LOC_Os08g38410.3, LOC_Os08g38410.2, LOC_Os08g38410.1				GO:0048573 - photoperiodism, flowering, GO:0003723 - RNA binding, GO:0051252 - regulation of RNA metabolic process, GO:0005654 - nucleoplasm, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0048364 - root development	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000656 - root development trait, TO:0000615 - abscisic acid sensitivity, TO:0000137 - days to heading, TO:0002616 - flowering time	
23596	EXPA27	OsEXPA27	ALPHA-EXPANSIN 27		ALPHA-EXPANSIN 27		10	Q7XE35.		Os10g0439100 	LOC_Os10g30330.1				GO:0009664 - plant-type cell wall organization, GO:0016020 - membrane, GO:0005576 - extracellular region, GO:0005618 - cell wall		
23597	EXPA33	OsEXPA33	ALPHA-EXPANSIN 33	expansin A33	ALPHA-EXPANSIN 33		5	P0C1Y4.		Os05g0277000	LOC_Os05g19600.1				GO:0009664 - plant-type cell wall organization, GO:0005618 - cell wall, GO:0005576 - extracellular region, GO:0016020 - membrane		
23598	BOP2	OsNH5, NH5, OsBOP2, OsBTBA5, BTBA5	OsBLADE-ON-PETIOLE 2	NPR1 homologue 5, OsBLADE-ON-PETIOLE2, BTB-type E3 ubiquitin ligase A5		osbop2, osbop2-1	11	Q2RAQ5. Protein NH5 is encoded by two duplicate genes, Os11g04600 and Os12g04410 (Bai et al. 2011). PO:0025570: vascular leaf development stage.	 Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os11g0141900	LOC_Os11g04600.1				GO:0005634 - nucleus, GO:0048366 - leaf development, GO:0009790 - embryonic development, GO:0010229 - inflorescence development, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway	TO:0000621 - inflorescence development trait, TO:0000492 - leaf shape	PO:0009051 - spikelet , PO:0020128 - leaf margin , PO:0001083 - inflorescence development stage , PO:0020105 - ligule , PO:0000017 - vascular leaf primordium , PO:0020104 - leaf sheath 
23599	BOP3	NH5, OsNH5, OsBOP3, OsBTBA6, BTBA6	BLADE-ON-PETIOLE 3	NPR1 homologue 5, OsBLADE-ON-PETIOLE3, BTB-type E3 ubiquitin ligase A6	_	osbop3, osbop3-1	12	Q2QXZ2. Protein NH5 is encoded by two duplicate genes, Os11g04600 and Os12g04410 (Bai et al. 2011). PO:0025570: vascular leaf development stage. GO:0099402: plant organ development.	 Vegetative organ - Leaf,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os12g0138500	LOC_Os12g04410.1				GO:0009790 - embryonic development, GO:0009845 - seed germination, GO:0009413 - response to flooding, GO:0005634 - nucleus, GO:0048366 - leaf development, GO:0009864 - induced systemic resistance, jasmonic acid mediated signaling pathway, GO:0010229 - inflorescence development	TO:0000524 - submergence tolerance, TO:0000240 - sterile lemma length, TO:0000492 - leaf shape, TO:0000621 - inflorescence development trait	PO:0020105 - ligule , PO:0020104 - leaf sheath , PO:0009051 - spikelet , PO:0000017 - vascular leaf primordium , PO:0020128 - leaf margin , PO:0007045 - coleoptile emergence stage , PO:0001083 - inflorescence development stage , PO:0007057 - 0 seed germination stage 
23600	_	OsLACS2, LACS2	_	long-chain acyl-CoA synthetase 2			11		 Biochemical character	Os11g0558300	LOC_Os11g35400.4, LOC_Os11g35400.3, LOC_Os11g35400.2, LOC_Os11g35400.1				GO:0003824 - catalytic activity		
23601	LACS3	OsLACS3	LONG-CHAIN ACYL-COA SYNTHETASE 3	long-chain acyl-CoA synthetase 3	LONG-CHAIN ACYL-COA SYNTHETASE 3		6		 Biochemical character	Os06g0158000	LOC_Os06g06350.2, LOC_Os06g06350.1				GO:0003824 - catalytic activity		
23602	LACS4	OsLACS4	LONG-CHAIN ACYL-COA SYNTHETASE 4	long-chain acyl-CoA synthetase 4	LONG-CHAIN ACYL-COA SYNTHETASE 4		1		 Biochemical character	Os01g0681200	LOC_Os01g48910.3, LOC_Os01g48910.2, LOC_Os01g48910.1				GO:0003824 - catalytic activity		
23603	LACS5	OsLACS5	LONG-CHAIN ACYL-COA SYNTHETASE 5	long-chain acyl-CoA synthetase 5	LONG-CHAIN ACYL-COA SYNTHETASE 5		1		 Biochemical character	Os01g0655800	LOC_Os01g46750.4, LOC_Os01g46750.3, LOC_Os01g46750.2, LOC_Os01g46750.1				GO:0003824 - catalytic activity		
23604	HSL3	OsHSL3	_	HIS1-like gene 3			2		 Biochemical character	Os02g0320800	LOC_Os02g21550.1				GO:0016491 - oxidoreductase activity, GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding		
23605	HSL4	OsHSL4	_	HIS1-like gene 4			6		 Biochemical character	Os06g0177700|Os06g0176500	LOC_Os06g08023.1|LOC_Os06g07923.2				GO:0051213 - dioxygenase activity, GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding		
23606	HSL5	OsHSL5	_	HIS1-like gene 5			6	CT837739. 	 Biochemical character	Os06g0177600|Os06g0176300	LOC_Os06g08014.1|LOC_Os06g07914.1				GO:0051213 - dioxygenase activity, GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity		
23607	HSL6	OsHSL6	_	HIS1-like gene 6			6		 Biochemical character	Os06g0178650	LOC_Os06g08041.1						
23608	NPH1A	OsNPH1a, OsAGC22, AGC22	NONPHOTOTROPHIC HYPOCOTYL 1A	nonphototrophic hypocotyl 1a, AGC protein kinase 22	AGC PROTEIN KINASE 22		12	Q2QYY8. AB018444.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0101800	LOC_Os12g01140.5, LOC_Os12g01140.4, LOC_Os12g01140.3, LOC_Os12g01140.2, LOC_Os12g01140.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0009882 - blue light photoreceptor activity, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0018298 - protein-chromophore linkage, GO:0009416 - response to light stimulus, GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0015979 - photosynthesis, GO:0005634 - nucleus	TO:0000075 - light sensitivity	PO:0020033 - coleoptile , PO:0025034 - leaf 
23609	PK4	OsPK4	PYRUVATE KINASE 4	pyruvate kinase 4	PYRUVATE KINASE 4	ospk4	12	Q2QXR8. cytosolic pyruvate kinase (PKc) subunit. PO:0030104: caryopsis fruit.	 Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality	Os12g0145700	LOC_Os12g05110.1				GO:0009737 - response to abscisic acid stimulus, GO:0010431 - seed maturation, GO:0048316 - seed development, GO:0005524 - ATP binding, GO:0016301 - kinase activity, GO:0000287 - magnesium ion binding, GO:0030955 - potassium ion binding, GO:0004743 - pyruvate kinase activity, GO:0006096 - glycolysis, GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0005739 - mitochondrion	TO:0000455 - seed set percent, TO:0000653 - seed development trait, TO:0000615 - abscisic acid sensitivity, TO:0000449 - grain yield per plant, TO:0000266 - chalky endosperm, TO:0000196 - amylose content, TO:0000696 - starch content, TO:0000598 - protein content	PO:0001170 - seed development stage , PO:0009010 - seed , PO:0007632 - seed maturation stage 
23610	RHD3	OsRHD3	_				11	Q2R224.	 Tolerance and resistance - Stress tolerance	Os11g0582300	LOC_Os11g37260.1				GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0016320 - endoplasmic reticulum membrane fusion, GO:0005737 - cytoplasm, GO:0005789 - endoplasmic reticulum membrane, GO:0005783 - endoplasmic reticulum, GO:0007029 - endoplasmic reticulum organization, GO:0016021 - integral to membrane, GO:0009415 - response to water	TO:0000237 - water stress trait	
23611	_		_	Expressed protein			1	OsMYB80-binding promoter.		Os01g0132200	LOC_Os01g04080.1						
23612	_		_	Transferase family protein			4	OsMYB80-binding promoter.	 Biochemical character	Os04g0609500	LOC_Os04g51990.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
23613	_	App1, OsApp1	_				7	OsMYB80-binding promoter.		Os07g0599300	LOC_Os07g40830.1						
23614	_		_	Expressed protein			3	OsMYB80-binding promoter.		Os03g0558700	LOC_Os03g35920.1						
23615	_	GID1L2, OsGID1L2	_	Gibberellin receptor GID1L2			6	OsMYB80-binding promoter.	 Biochemical character	Os06g0214850	LOC_Os06g11135.1				GO:0009056 - catabolic process, GO:0016787 - hydrolase activity		
23616	_	OsRING151, RING151	_	"\"Zinc finger, C3HC4-type domain-containing protein\", RING-type E3 ubiquitin ligase 151"			1	OsMYB80-binding promoter.		Os01g0703300	LOC_Os01g50750.1				GO:0016021 - integral to membrane		
23617	GH27	OsGH27	GLYCOSIDE HYDROLASE 27	Glycoside hydrolase 27	GLYCOSIDE HYDROLASE 27		1	GO:0052692: raffinose alpha-galactosidase activity.	 Biochemical character	Os01g0518500	LOC_Os01g33420.1				GO:0005975 - carbohydrate metabolic process		
23618	PSE	Pse (t), Pse	PREMATURE SENESCENCE	premature senescence			5	Q65XF2.	 Tolerance and resistance - Stress tolerance	Os05g0148700	LOC_Os05g05600.6, LOC_Os05g05600.5, LOC_Os05g05600.4, LOC_Os05g05600.3, LOC_Os05g05600.2, LOC_Os05g05600.1				GO:0034599 - cellular response to oxidative stress, GO:0009507 - chloroplast		
23619	PI68	Pi68(t), Pi68	PYRICULARIA ORYZAE RESISTANCE 68	Magnaporthe grisea resistance-68, Blast resistance 68, malectin-serine threonine kinase	MALECTIN-SERINE THREONINE KINASE		3		 Tolerance and resistance - Disease resistance	Os03g0281466	LOC_Os03g17310.1				GO:0009620 - response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000074 - blast disease	
23620	IBM2	OsIBM2, TN1, OsTN1	INCREASED BONSAI METHYLATION 2	Increased Bonsai Methylation 2, Tiller Number 1		osibm2, tn1-1, tn1-2, tn1-3, tn1-4	1	rice homolog of Arabidopsis IBM2. GO:1905642: negative regulation of DNA methylation.	 Vegetative organ - Culm	Os01g0610300	LOC_Os01g42460.1				GO:0003723 - RNA binding, GO:0003682 - chromatin binding, GO:0022414 - reproductive process, GO:0005634 - nucleus, GO:0031936 - negative regulation of chromatin silencing, GO:0032502 - developmental process, GO:0051570 - regulation of histone H3-K9 methylation, GO:0040029 - regulation of gene expression, epigenetic, GO:0048831 - regulation of shoot development	TO:0000329 - tillering ability, TO:0000346 - tiller number	PO:0004709 - axillary bud 
23621	PLA2	OsPLA2	PHOSPHOLIPASE A2	phospholipase A2	PHOSPHOLIPASE A2		3	Q10E50. GO:0102567: phospholipase A2 activity (consuming 1,2-dipalmitoylphosphatidylcholine). GO:0102568: phospholipase A2 activity consuming 1,2-dioleoylphosphatidylethanolamine).	 Biochemical character	Os03g0708000	LOC_Os03g50030.1				GO:0016042 - lipid catabolic process, GO:0004623 - phospholipase A2 activity, GO:0008289 - lipid binding, GO:0005509 - calcium ion binding, GO:0005576 - extracellular region, GO:0006644 - phospholipid metabolic process, GO:0050482 - arachidonic acid secretion		
23622	PAP2	OsPAP2	PHOSPHATIDATE PHOSPHATASE 2	phosphatidate phosphatase 2	PHOSPHATIDATE PHOSPHATASE 2		2		 Biochemical character	Os02g0704500	LOC_Os02g47570.2, LOC_Os02g47570.1				GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle		
23623	EPT1	OsEPT1	ETHANOLAMINE PHOSPHOTRANSFERASE 1	ethanolamine phosphotransferase 1	ETHANOLAMINE PHOSPHOTRANSFERASE 1		2		 Biochemical character	Os02g0119800	LOC_Os02g02750.3, LOC_Os02g02750.2				GO:0016021 - integral to membrane, GO:0008654 - phospholipid biosynthetic process, GO:0016780 - phosphotransferase activity, for other substituted phosphate groups		
23624	PDCT	OsPDCT	PHOSPHATIDYLCHOLINE:DIACYLGLYCEROL CHOLINEPHOSPHOTRANSFERASE	phosphatidylcholine:diacylglycerol cholinephosphotransferase	PHOSPHATIDYLCHOLINE:DIACYLGLYCEROL CHOLINEPHOSPHOTRANSFERASE		6		 Biochemical character	Os06g0607100	LOC_Os06g40500.1				GO:0016021 - integral to membrane, GO:0004142 - diacylglycerol cholinephosphotransferase activity		
23625	SNRK1B	SnRK1B, OsSnRK1B, OsSnRK1.3, SnRK1.3, OsSnRK1alphaD, SnRK1alphaD	SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE 1B	Sucrose nonfermenting-1-related protein kinase 1.3, SNF1-related protein kinase 1.3	SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE 1B		7	GO:0035556: intracellular signal transduction.	 Tolerance and resistance - Stress tolerance	Os07g0194100	LOC_Os07g09610.1				GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000303 - cold tolerance	
23626	SMAX1	OsSMAX1	SUPPRESSOR OF MAX2-1	Suppressor of MAX2-1	SUPPRESSOR OF MAX2-1	smax1, smax1-1, smax1-2, Ossmax1	8	Q6Z517. PRJNA593368 in the Gene Expression Omnibus database. GO:0036377: arbuscular mycorrhizal association. GO:1901601: strigolactone biosynthetic process. GO:0080167: response to karrikin.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os08g0250900	LOC_Os08g15230.1				GO:0080006 - internode patterning, GO:0005634 - nucleus, GO:0009646 - response to absence of light, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus	TO:0006036 - stem elongation, TO:0000207 - plant height, TO:0000460 - light intensity sensitivity, TO:0000544 - mesocotyl length	
23627	DLK2A	DLK2a, OsDLK2a	D14-LIKE 2A	D14-Like2a, D14-Like 2a	D14-LIKE 2A		5				LOC_Os05g15240.1						
23628	KIN6	OsKIN6, OsARK2, ARK2	KINASE 6	Kinase 6, ARBUSCULAR RECEPTOR-LIKE KINASE 2	KINASE 6	ark2	4			Os04g0465900	LOC_Os04g39180.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009610 - response to symbiotic fungus, GO:0006468 - protein amino acid phosphorylation		
23629	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family 		Os01g0386600	LOC_Os01g28980.1				GO:0010167 - response to nitrate, GO:0015112 - nitrate transmembrane transporter activity		
23630	NPF4.5	PTR, OsNPF4.5	_	peptide transporter, Nitrate Transporter 1/Peptide Transporter family protein 4.5		Osnpf4.5-1, Osnpf4.5-2, Osnpf4.5-3	1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity. GO:0036377: arbuscular mycorrhizal association. TO:0020100: nitrate uptake.		Os01g0748950	LOC_Os01g54515.1				GO:0043903 - regulation of symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus, GO:0042128 - nitrate assimilation, GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		PO:0009005 - root 
23631	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0761400	LOC_Os01g55600.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23632	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0761500	LOC_Os01g55610.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23633	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0871500	LOC_Os01g65100.3, LOC_Os01g65100.2, LOC_Os01g65100.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23634	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. 		Os01g0871700/Os01g0871766	LOC_Os01g65120.1				GO:0022857 - transmembrane transporter activity		
23635	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0871900	LOC_Os01g65140.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23636	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0872000	LOC_Os01g65150.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23637	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0872100	LOC_Os01g65169.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23638	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0872300/Os01g0872400	LOC_Os01g65190.1				GO:0015333 - peptide:hydrogen symporter activity		
23639	NPF5.16	PTR, OsNPF5.16	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 5.16	peptide transporter, nitrate or peptide transporter family 5.16, NRT1/PTR family 5.16	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 5.16		1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity. TO:0020098: nitrate sensitivity. TO:0000949: seedling growth and development trait. GO:1900140: regulation of seedling development. GO:0071705: nitrogen compound transport. TO:0020094: nitrate content. TO:0020093: nitrogen content. TO:0003001: stem dry weight. GO:2000280: regulation of root development.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Vegetative organ - Root	Os01g0872500	LOC_Os01g65200.3, LOC_Os01g65200.2, LOC_Os01g65200.1				GO:0048364 - root development, GO:0010167 - response to nitrate, GO:0022857 - transmembrane transporter activity, GO:0015112 - nitrate transmembrane transporter activity, GO:0010447 - response to acidity, GO:0042128 - nitrate assimilation, GO:0015333 - peptide:hydrogen symporter activity, GO:0005886 - plasma membrane	TO:0000227 - root length, TO:0000371 - yield trait, TO:0000357 - growth and development trait, TO:0000352 - plant dry weight, TO:0000479 - acid sensitivity, TO:0000346 - tiller number, TO:0000457 - total biomass yield, TO:0000396 - grain yield, TO:0002660 - cytokinin content, TO:0000449 - grain yield per plant, TO:0000447 - filled grain number, TO:0000084 - root number	PO:0009005 - root , PO:0020104 - leaf sheath 
23640	_	PTR	_	peptide transporter			1	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os01g0872600	LOC_Os01g65210.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23641	_	PTR, NPF8.1, OsNPF8.1	_	peptide transporter			1	peptide transporter (PTR) gene family. OsNPF8.1 in Cai et al. 2024.  GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.	 Tolerance and resistance - Stress tolerance	Os01g0902700	LOC_Os01g67630.2, LOC_Os01g67630.1				GO:0009266 - response to temperature stimulus, GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity	TO:0000432 - temperature response trait	
23642	_	PTR, NPF8.1, OsNPF8.1	_	peptide transporter			1	peptide transporter (PTR) gene family. NPF8.1 in Cai et al. 2024. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.	 Tolerance and resistance - Stress tolerance	Os01g0902800	LOC_Os01g67640.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0009266 - response to temperature stimulus, GO:0022857 - transmembrane transporter activity	TO:0000432 - temperature response trait	
23643	_	PTR	_	peptide transporter			2	peptide transporter (PTR) gene family.		Os02g0519401	LOC_Os02g31980.1				GO:0022857 - transmembrane transporter activity		
23644	_	PTR	_	peptide transporter			2	peptide transporter (PTR) gene family.GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os02g0757400	LOC_Os02g52060.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23645	_	PTR	_	peptide transporter			3	peptide transporter (PTR) gene family.GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os03g0138700	LOC_Os03g04570.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23646	_	PTR	_	peptide transporter			3	peptide transporter (PTR) gene family.		Os03g0235300	LOC_Os03g13240.2, LOC_Os03g13240.1				GO:0022857 - transmembrane transporter activity, GO:0006857 - oligopeptide transport		
23647	_	PTR	_	peptide transporter, PTR2-like gene			3	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.	 Tolerance and resistance - Stress tolerance	Os03g0235700	LOC_Os03g13250.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity, GO:0009620 - response to fungus, GO:0009610 - response to symbiotic fungus		PO:0009005 - root 
23648	_	PTR	_	peptide transporter			3	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os03g0286700	LOC_Os03g17770.1				GO:0015333 - peptide:hydrogen symporter activity		
23649	_	PTR	_	peptide transporter			3	peptide transporter (PTR) gene family. 		Os03g0809100	LOC_Os03g59450.1				GO:0022857 - transmembrane transporter activity		
23650	_	PTR	_	peptide transporter			3	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os03g0823500	LOC_Os03g60850.1				GO:0022857 - transmembrane transporter activity, GO:0006857 - oligopeptide transport, GO:0015333 - peptide:hydrogen symporter activity		
23651	_	PTR	_	peptide transporter			4	peptide transporter (PTR) gene family. 			LOC_Os04g34640.1						
23652	_	PTR	_	peptide transporter			4	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os04g0441800	LOC_Os04g36040.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23653	_	PTR	_	peptide transporter			4	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os04g0491200	LOC_Os04g41400.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23654	_	PTR	_	peptide transporter			4	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os04g0491350	LOC_Os04g41410.1				GO:0015333 - peptide:hydrogen symporter activity		
23655	_	PTR	_	peptide transporter			4	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os04g0491500	LOC_Os04g41450.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23656	NPF7.6	PTR, OsNPF7.6	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.6	peptide transporter, nitrate transporter 1/peptide transporter 7.6	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.6		4	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity. TO:0020098: nitrate sensitivity. TO:0020100: nitrate uptake. TO:0003015: grain dry weight.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os04g0597400	LOC_Os04g50930.1				GO:0010167 - response to nitrate, GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity, GO:0019740 - nitrogen utilization, GO:0005886 - plasma membrane	TO:0000447 - filled grain number, TO:0000346 - tiller number, TO:0000396 - grain yield, TO:0000590 - grain weight	
23657	_	PTR	_	peptide transporter			4	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os04g0660900	LOC_Os04g56560.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23658	_	PTR	_	peptide transporter			4	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os04g0691366/Os04g0691400	LOC_Os04g59480.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23659	_	PTR	_	peptide transporter			5	peptide transporter (PTR) gene family. 		Os05g0335800	LOC_Os05g27010.1				GO:0022857 - transmembrane transporter activity		
23660	_	PTR	_	peptide transporter			5	CT836455. peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os05g0338900/Os05g0338933	LOC_Os05g27304.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23661	_	PTR	_	peptide transporter			5	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os05g0410500	LOC_Os05g33960.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23662	_	PTR	_	peptide transporter			5	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os05g0410800	LOC_Os05g34000.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23663	_	PTR	_	peptide transporter			5	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os05g0410900	LOC_Os05g34010.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23664	_	PTR, OsNPF3.1, NPF3.1	_	peptide transporter			5	peptide transporter (PTR) gene family. OsNPF3.1 in Cai et al. 2024. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.	 Tolerance and resistance - Stress tolerance	Os05g0411100	LOC_Os05g34030.1				GO:0009266 - response to temperature stimulus, GO:0015333 - peptide:hydrogen symporter activity	TO:0000432 - temperature response trait	
23665	_	PTR	_	peptide transporter			5	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os05g0430900	LOC_Os05g35594.1				GO:0006857 - oligopeptide transport, GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23666	_	PTR	_	peptide transporter			5	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os05g0431700	LOC_Os05g35650.2, LOC_Os05g35650.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23667	_	PTR	_	peptide transporter			6	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os06g0239300	LOC_Os06g13200.1				GO:0015333 - peptide:hydrogen symporter activity		
23668	_	PTR	_	peptide transporter			6	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os06g0239500	LOC_Os06g13210.2, LOC_Os06g13210.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23669	NPF3.1	PTR, OsNPF3.1	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 3.1	peptide transporter, NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family 3.1	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 3.1	osnpf3.1	6	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity. PO:0030123: panicle inflorescence.	 Reproductive organ - Heading date,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os06g0264500	LOC_Os06g15370.1				GO:0016020 - membrane, GO:0015333 - peptide:hydrogen symporter activity, GO:0010336 - gibberellic acid homeostasis, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0048573 - photoperiodism, flowering, GO:0019740 - nitrogen utilization, GO:0006857 - oligopeptide transport	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000382 - 1000-seed weight, TO:0000457 - total biomass yield, TO:0000207 - plant height	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009047 - stem 
23670	_	PTR	_	peptide transporter			6	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os06g0705600	LOC_Os06g49210.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23671	_	PTR	_	peptide transporter			6	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os06g0705700	LOC_Os06g49220.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23672	_	PTR	_	peptide transporter			6	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os06g0706100	LOC_Os06g49240.1				GO:0015333 - peptide:hydrogen symporter activity		
23673	_	PTR	_	peptide transporter			7	peptide transporter (PTR) gene family. 		Os07g0208900	LOC_Os07g10820.1				GO:0022857 - transmembrane transporter activity		
23674	_	PTR	_	peptide transporter			7	peptide transporter (PTR) gene family. 		Os07g0403800	LOC_Os07g21960.1				GO:0022857 - transmembrane transporter activity		
23675	_	PTR	_	peptide transporter			7	peptide transporter (PTR) gene family. 			LOC_Os07g26450.1						
23676	_	PTR	_	peptide transporter			8	peptide transporter (PTR) gene family. 		Os08g0410500	LOC_Os08g31700.1				GO:0022857 - transmembrane transporter activity		
23677	_	PTR	_	peptide transporter			8	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os08g0527700	LOC_Os08g41590.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23678	_	PTR	_	peptide transporter			9	peptide transporter (PTR) gene family. 			LOC_Os09g16150.1						
23679	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0109700	LOC_Os10g02080.1				GO:0015333 - peptide:hydrogen symporter activity		
23680	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0109900	LOC_Os10g02100.2, LOC_Os10g02100.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23681	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. 		Os10g0110600	LOC_Os10g02210.1				GO:0022857 - transmembrane transporter activity		
23682	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0110800	LOC_Os10g02220.5, LOC_Os10g02220.4, LOC_Os10g02220.3, LOC_Os10g02220.2, LOC_Os10g02220.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23683	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0110800	LOC_Os10g02240.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23684	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0111700	LOC_Os10g02260.2, LOC_Os10g02260.1				GO:0022857 - transmembrane transporter activity, GO:0015333 - peptide:hydrogen symporter activity		
23685	NPF8.17	PTR, OsNPF8.17	NRT1/PTR FAMILY 8.17	peptide transporter, NRT1/PTR family protein 8.17	NRT1/PTR FAMILY 8.17		10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0112500	LOC_Os10g02340.1				GO:0015333 - peptide:hydrogen symporter activity		
23686	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0148400	LOC_Os10g05780.1				GO:0015333 - peptide:hydrogen symporter activity		
23687	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0370700	LOC_Os10g22560.3, LOC_Os10g22560.2, LOC_Os10g22560.1				GO:0015333 - peptide:hydrogen symporter activity		
23688	_	PTR	_	peptide transporter			10	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os10g0579800	LOC_Os10g42900.1				GO:0015333 - peptide:hydrogen symporter activity		
23689	_	PTR	_	peptide transporter			11	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os11g0282800	LOC_Os11g17970.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23690	_	PTR	_	peptide transporter			11	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os11g0283500	LOC_Os11g18044.1				GO:0015333 - peptide:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity		
23691	_	PTR	_	peptide transporter			11	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os11g0284032/Os11g0284300	LOC_Os11g18110.1				GO:0015333 - peptide:hydrogen symporter activity		
23692	_	PTR	_	peptide transporter			11	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os11g0426100	LOC_Os11g23890.1				GO:0015333 - peptide:hydrogen symporter activity		
23693	_	PTR	_	peptide transporter			12	peptide transporter (PTR) gene family. 			LOC_Os12g05030.1						
23694	_	PTR	_	peptide transporter			12	peptide transporter (PTR) gene family. GO:0035673: oligopeptide transmembrane transporter activity. GO:1904680: peptide transmembrane transporter activity.		Os12g0240800/Os12g0240850/Os12g0240875	LOC_Os12g13790.1				GO:0015333 - peptide:hydrogen symporter activity		
23695	_	PTR	_	peptide transporter			12	peptide transporter (PTR) gene family. 			LOC_Os12g15600.1						
23696	NPF2.3	PTR, OsNPF2.3	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 2.3	peptide transporter, nitrate or peptide transporter family 2.3	NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 2.3		12	peptide transporter (PTR) gene family. 		Os12g0638300	LOC_Os12g44110.2				GO:0022857 - transmembrane transporter activity		
23697	RYMV3	OsRYMV3	RESISTANCE TO YELLOW MOTTLE VIRUS-3	Rice yellow mottle virus resistant 3, Resistance to yellow mottle virus-3		NLRRYMV3-x, NLRRYMV3-R1, NLRRYMV3-y	11	Oryza glaberrima ORGLA11G0175800.1 corresponds to this gene. disease resistance protein RGA5-like. BGIOSGA033598 (indica). 	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os11g0657900	LOC_Os11g43700.1				GO:0051607 - defense response to virus, GO:0006952 - defense response, GO:0009624 - response to nematode, GO:0002215 - defense response to nematode, GO:0043531 - ADP binding, GO:0009615 - response to virus	TO:0000384 - nematode damage resistance, TO:0000088 - rice yellow mottle virus resistance	
23698	TCD3	OsTCD3, OsPUS1, PUS1	THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT 3	thermo-sensitive chlorophyll-deficient 3, pseudouridine synthase 1, low temperature sensitivity mutant	thermo-sensitive chlorophyll-deficient 3, pseudouridine synthase 1, low temperature sensitivity mutant	tcd3, lts, ospus1-1	3	GO:0120159: rRNA pseudouridine synthase activity. GO:1900865: chloroplast RNA modification. GO:1901259: chloroplast rRNA processing. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1901259: chloroplast rRNA processing. TO:0006060: leaf chlorosis.	 Coloration - Others,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os03g0152700	LOC_Os03g05806.1				GO:0032544 - plastid translation, GO:0001522 - pseudouridine synthesis, GO:0009658 - chloroplast organization, GO:0009409 - response to cold, GO:0009507 - chloroplast, GO:0019843 - rRNA binding, GO:0006417 - regulation of translation, GO:0009631 - cold acclimation, GO:0090069 - regulation of ribosome biogenesis, GO:0000489 - maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA), GO:0006355 - regulation of transcription, DNA-dependent, GO:0009982 - pseudouridine synthase activity, GO:0000488 - maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA), GO:0003723 - RNA binding	TO:0000295 - chlorophyll-b content, TO:0002759 - grain number, TO:0000152 - panicle number, TO:0000496 - carotenoid content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000303 - cold tolerance, TO:0002715 - chloroplast development trait, TO:0000605 - hydrogen peroxide content	PO:0025034 - leaf , PO:0001050 - leaf development stage 
23699	_		_	histone H1, Oshistone H1			6			Os06g0130800	LOC_Os06g04020.1				GO:0030261 - chromosome condensation, GO:0031492 - nucleosomal DNA binding, GO:0016584 - nucleosome positioning, GO:0006334 - nucleosome assembly, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003690 - double-stranded DNA binding, GO:0045910 - negative regulation of DNA recombination, GO:0031936 - negative regulation of chromatin silencing		
23700	MSCP	OsMSCP	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN	mitochondrial substrate carrier family protein	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN		3			Os03g0213800	LOC_Os03g11510.1						
23701	_		_	ATP synthase subunit alpha	_		10	LOC107279124 (Q8S7T5, AK110794.1, AK241391.1).									
23702	GSA1	OsGSA1, UGT83A1, OsUGT83A1	GRAIN SIZE AND ABIOTIC STRESS TOLERANCE 1	Grain Size and Abiotic stress tolerance 1, UDP-glucosyltransferase 83A1	UDP-GLUCOSYLTRANSFERASE 83A1	GSA1-CG14, GSA1-WYJ	3	TO:0020106: Indole-3-acetic acid content. TO:0000975: grain width. PO:0030104: caryopsis fruit. GO:2000762: regulation of phenylpropanoid metabolic process. GO:1901141: regulation of lignin biosynthetic process.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os03g0757500	LOC_Os03g55040.1				GO:0001558 - regulation of cell growth, GO:0010229 - inflorescence development, GO:0009698 - phenylpropanoid metabolic process, GO:0010600 - regulation of auxin biosynthetic process, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0008194 - UDP-glycosyltransferase activity, GO:0042127 - regulation of cell proliferation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009809 - lignin biosynthetic process	TO:0000396 - grain yield, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0002672 - auxin content, TO:0000290 - flavonoid content, TO:0000657 - spikelet anatomy and morphology trait, TO:0000592 - 1000-dehulled grain weight, TO:0000734 - grain length, TO:0000397 - grain size	PO:0009051 - spikelet 
23703	CHS19	OsCHS19	CHALCONE SYNTHASE 19	Chalcone synthase 19	CHALCONE SYNTHASE 19		10		 Biochemical character	Os10g0168300	LOC_Os10g08670.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process		
23704	CHS26	OsCHS26	CHALCONE SYNTHASE 26	Chalcone synthase 26	CHALCONE SYNTHASE 26		4		 Biochemical character		LOC_Os03g47000.1				GO:0009058 - biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
23705	CHS27	OsCHS27	CHALCONE SYNTHASE 27	Chalcone synthase 27	CHALCONE SYNTHASE 27		5		 Biochemical character	Os05g0496300	LOC_Os05g41645.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
23706	CHS31	OsCHS31	CHALCONE SYNTHASE 31	Chalcone synthase 31	CHALCONE SYNTHASE 31		12		 Biochemical character	Os12g0176050	LOC_Os12g07690.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009058 - biosynthetic process		
23707	NRFG6	OsNRFG6, SDRLK-38, OsSDRLK-38, SDRLK38, OsSDRLK38	NEO-TETRAPLOID RICE FERTILITY RELATED GENE 6	neo-tetraploid rice fertility related gene 6, S-Domain receptor like kinase-38		Osnrfg6, Osnrfg6-1, Osnrfg6-2, Osnrfg6-3, Osnrfg6-4	6	GO:0090567: reproductive shoot system development.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0602500	LOC_Os06g40030.1				GO:0009553 - embryo sac development, GO:0009566 - fertilization, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0009790 - embryonic development, GO:0005783 - endoplasmic reticulum	TO:0000152 - panicle number, TO:0000455 - seed set percent, TO:0000371 - yield trait, TO:0000303 - cold tolerance, TO:0000420 - fertility related trait, TO:0000416 - embryosac abortion, TO:0000276 - drought tolerance, TO:0000449 - grain yield per plant, TO:0000421 - pollen fertility, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000592 - 1000-dehulled grain weight, TO:0000524 - submergence tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009082 - spikelet floret , PO:0020003 - plant ovule , PO:0009047 - stem , PO:0009066 - anther , PO:0009072 - plant ovary , PO:0025034 - leaf 
23708	KIN7L	OsKIN7L	KINESIN MOTOR DOMAIN CONTAINING PROTEIN 7L	kinesin motor domain containing protein 7L	KINESIN MOTOR DOMAIN CONTAINING PROTEIN 7L	kin7l	11	Q2R2P7.	 Reproductive organ - panicle,  Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Seed - Morphological traits	Os11g0552600	LOC_Os11g35090.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0007018 - microtubule-based movement, GO:0008017 - microtubule binding, GO:0003777 - microtubule motor activity	TO:0000455 - seed set percent, TO:0000421 - pollen fertility, TO:0000152 - panicle number, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000371 - yield trait, TO:0000592 - 1000-dehulled grain weight	
23709	KIN14M	OsKIN14M	KINESIN MOTOR DOMAIN CONTAINING PROTEIN 14M	kinesin motor domain containing protein 14M	KINESIN MOTOR DOMAIN CONTAINING PROTEIN 14M	kin14m	11	B9FTR1.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Seed - Morphological traits,  Vegetative organ - Culm	Os06g0554700	LOC_Os06g36080.1				GO:0008017 - microtubule binding, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0007018 - microtubule-based movement, GO:0003777 - microtubule motor activity	TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000592 - 1000-dehulled grain weight, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000421 - pollen fertility, TO:0000371 - yield trait	
23710	TBP2.2	OsTBP2.2	TATA-BOX BINDING PROTEIN 2.2	TATA-box binding protein 2.2	TATA-BOX BINDING PROTEIN 2.2	ostbp2.2	10	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os10g0432300	LOC_Os10g29660.2				GO:0009699 - phenylpropanoid biosynthetic process, GO:0000165 - MAPKKK cascade, GO:0015979 - photosynthesis, GO:0006352 - transcription initiation, GO:0008134 - transcription factor binding, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0006366 - transcription from RNA polymerase II promoter, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0003700 - transcription factor activity	TO:0000522 - stomatal conductance, TO:0001017 - water use efficiency, TO:0000276 - drought tolerance, TO:0001015 - photosynthetic rate, TO:0001018 - transpiration rate, TO:0000552 - shoot dry weight, TO:0000346 - tiller number, TO:0000207 - plant height	PO:0025034 - leaf , PO:0009047 - stem 
23711	GHR1	OsGHR1	GUARD CELL HYDROGEN PEROXIDE-RESISTANT 1	Guard cell Hydrogen peroxide-Resistant1			7	GO:0071485: cellular response to absence of light. GO:0071244: cellular response to carbon dioxide. GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement. GO:0090333: regulation of stomatal closure.		Os07g0145400	LOC_Os07g05190.1				GO:0005524 - ATP binding, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0004672 - protein kinase activity		
23712	NLP1	OsNLP1	NIN-LIKE PROTEIN 1	NLP transcription factor 1, NODULE INCEPTION-like protein 1	NIN-LIKE PROTEIN 1		3	Q10S83. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0131100	LOC_Os03g03900.1				GO:0003677 - DNA binding, GO:0009737 - response to abscisic acid stimulus, GO:0060359 - response to ammonium ion, GO:0042594 - response to starvation, GO:0010167 - response to nitrate, GO:0009751 - response to salicylic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000011 - nitrogen sensitivity	PO:0007022 - seed imbibition stage 
23713	NLP4	OsNLP4, NLP4.1, NLP4.2	NIN-LIKE PROTEIN 4	NLP transcription factor 4, NODULE INCEPTION-like protein 4, NIN-like protein 4	NIN-LIKE PROTEIN 4	osnlp4, nlp4, nlp4-1, osnlp4-2, nlp4-3, osnlp4-1, osnlp4-2, osnlp4-3	9	GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation. GO:0090352: regulation of nitrate assimilation. TO:0020100: nitrate uptake. TO:0020094: nitrate content. TO:0006049: iron concentration. TO:1000034: root system iron content. TO:0006056: molybdenum content.	 Vegetative organ - Culm,  Vegetative organ - Root,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os09g0549450	LOC_Os09g37710.1, LOC_Os09g37710.2				GO:0019740 - nitrogen utilization, GO:0005634 - nucleus, GO:0006995 - cellular response to nitrogen starvation, GO:0006808 - regulation of nitrogen utilization, GO:0042128 - nitrate assimilation, GO:0009610 - response to symbiotic fungus, GO:0009620 - response to fungus, GO:0060359 - response to ammonium ion, GO:0042594 - response to starvation, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0010167 - response to nitrate, GO:0007584 - response to nutrient, GO:0048364 - root development, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0005829 - cytosol	TO:0000449 - grain yield per plant, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000516 - relative root length, TO:0000644 - relative root dry weight, TO:0000571 - shoot fresh weight, TO:0000656 - root development trait, TO:0000084 - root number, TO:0000346 - tiller number, TO:0000371 - yield trait, TO:0000227 - root length, TO:0000480 - nutrient sensitivity, TO:0001012 - lateral root length, TO:0001013 - lateral root number, TO:0000578 - root fresh weight, TO:0000457 - total biomass yield, TO:0000011 - nitrogen sensitivity, TO:0000636 - relative shoot dry weight, TO:0000357 - growth and development trait, TO:0000442 - plant fresh weight, TO:0001019 - root to total biomass ratio, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0007520 - root development stage , PO:0007022 - seed imbibition stage , PO:0009005 - root 
23714	NLP6	OsNLP6, NLP6.1	NIN-LIKE PROTEIN 6	NLP transcription factor 6, NODULE INCEPTION-like protein 6	NIN-LIKE PROTEIN 6		2	GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation.	 Tolerance and resistance - Stress tolerance	Os02g0136000	LOC_Os02g04340.1				GO:0009409 - response to cold, GO:0042594 - response to starvation, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000011 - nitrogen sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0007022 - seed imbibition stage 
23715	STL2	OsSTL2, OsCDC48-3, CDC48-3	SALT TOLERANCE LEVEL 2	salt tolerance level 2, Cell Division Cycle 48-3	CELL DIVISION CYCLE 48-3		8	GO:0097352: autophagosome maturation.	 Tolerance and resistance - Stress tolerance	Os08g0413000	LOC_Os08g31870.1				GO:0016887 - ATPase activity, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0071712 - ER-associated misfolded protein catabolic process, GO:0016236 - macroautophagy, GO:0051228 - mitotic spindle disassembly, GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex, GO:0030970 - retrograde protein transport, ER to cytosol, GO:0016787 - hydrolase activity, GO:0005634 - nucleus, GO:0031593 - polyubiquitin binding, GO:0030433 - ER-associated protein catabolic process, GO:0051301 - cell division	TO:0006001 - salt tolerance	
23716	PPR756	OsPPR756	PENTATRICOPEPTIDE REPEAT PROTEIN 756	Pentatricopeptide repeat protein 756	PENTATRICOPEPTIDE REPEAT PROTEIN 756	ppr756-1, ppr756-2, ppr756-3, ppr756-4	12	PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Leaf,  Reproductive organ - panicle	Os12g0289800	LOC_Os12g19260.1				GO:0005739 - mitochondrion, GO:0043231 - intracellular membrane-bounded organelle, GO:0009451 - RNA modification, GO:0009555 - pollen development, GO:0009507 - chloroplast	TO:0000180 - spikelet fertility, TO:0000206 - leaf angle, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0006032 - panicle size, TO:0000371 - yield trait, TO:0000214 - anther shape, TO:0000421 - pollen fertility, TO:0000455 - seed set percent	PO:0001007 - pollen development stage , PO:0009010 - seed , PO:0009066 - anther , PO:0009047 - stem 
23717	_	TRXz, OsTRXz	_	thioredoxin OsTRXz, PITH domain-containing protein			3			Os03g0795500	LOC_Os03g58130.1						
23718	FREE1	OsFREE1, OsFYVE14, FYVE14	FREE 1	FYVE Domain-containing protein 14	FYVE DOMAIN-CONTAINING PROTEIN 14		6	GO:0036258: multivesicular body assembly.		Os06g0724100	LOC_Os06g50840.1				GO:0070676 - intralumenal vesicle formation, GO:0000813 - ESCRT I complex, GO:0043130 - ubiquitin binding, GO:0031902 - late endosome membrane, GO:0046872 - metal ion binding		
23719	HA1	OsHA1	_				5	GO:0120029: proton export across plasma membrane. GO:1902600: proton transmembrane transport. GO:1990641: response to iron ion starvation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0319800	LOC_Os05g25550.2, LOC_Os05g25550.1				GO:0042594 - response to starvation, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0051453 - regulation of intracellular pH, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000224 - iron sensitivity	
23720	IMA1	OsIMA1	_				1			Os01g0647200							
23721	PTK10	OsPTK10	PROTEIN TYROSINE KINASE 10	Protein Tyrosine Kinase 10	PROTEIN TYROSINE KINASE 10		7	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os07g0613500	LOC_Os07g42200.1				GO:0009408 - response to heat, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0006970 - response to osmotic stress	TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity	PO:0000025 - root tip , PO:0007010 - whole plant fruit ripening stage , PO:0007632 - seed maturation stage , PO:0020103 - flag leaf , PO:0020033 - coleoptile , PO:0009005 - root , PO:0025034 - leaf , PO:0009006 - shoot system 
23722	WIP	OsWIP	WPP DOMAIN-INTERACTING PROTEIN	WPP domain-interacting protein	WPP DOMAIN-INTERACTING PROTEIN		4			Os04g0471300	LOC_Os04g39540.1				GO:0016021 - integral to membrane		
23723	SINE1	OsSINE1	SUN DOMAIN-BINDING AND NE LOCALIZATION PROTEIN 1	SUN domain-binding and NE localization protein1, SUN domain-binding and NE localization protein 1	SUN DOMAIN-BINDING AND NE LOCALIZATION PROTEIN 1		11	KASH (Klarsicht/ ANC-1/Syne homology) protein.		Os11g0580000	LOC_Os11g37100.1				GO:0008017 - microtubule binding, GO:0016021 - integral to membrane		
23724	SINE2	OsSINE2	SUN DOMAIN-BINDING AND NE LOCALIZATION PROTEIN 2	SUN domain-binding and NE localization protein2, SUN domain-binding and NE localization protein 2	SUN DOMAIN-BINDING AND NE LOCALIZATION PROTEIN 2		12	KASH (Klarsicht/ ANC-1/Syne homology) protein.		Os12g0624800	LOC_Os12g42960.1				GO:0008017 - microtubule binding, GO:0005874 - microtubule, GO:0016021 - integral to membrane		
23725	MIR396E	miR396e, osa-miR396e, osa-MIR396e, OsmiR396e, OsmiR396e	MICRORNA396E	MICRORNA396e, osa-miRNA396s	_			MI0001703	 Other						GO:0051782 - negative regulation of cell division, GO:0009733 - response to auxin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0016442 - RNA-induced silencing complex, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage, GO:0035195 - gene silencing by miRNA, GO:0009740 - gibberellic acid mediated signaling, GO:0009742 - brassinosteroid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0051511 - negative regulation of unidimensional cell growth	TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000145 - internode length, TO:0000206 - leaf angle, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height	
23726	PPR16	OsPPR16	PENTATRICOPEPTIDE REPEAT PROTEIN 16	pentatricopeptide repeat protein 16	PENTATRICOPEPTIDE REPEAT PROTEIN 16	osppr16, osppr16d, osppr16s	6	GO:1900871: chloroplast mRNA modification.	 Coloration - Chlorophyll,  Vegetative organ - Leaf	Os06g0112000	LOC_Os06g02200.1				GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0016556 - mRNA modification, GO:0015995 - chlorophyll biosynthetic process	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	
23727	DMD1	OsDMD1	DEFECTIVE MICROSPORE DEVELOPMENT 1	Defective Microspore Development1		dmd1, dmd1-2, dmd1-3	2	PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0550000	LOC_Os02g34500.1				GO:0009556 - microsporogenesis, GO:0010584 - pollen exine formation, GO:0043067 - regulation of programmed cell death, GO:0052545 - callose localization, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000187 - anther color, TO:0000218 - pollen abortion type, TO:0000437 - male sterility	PO:0009049 - inflorescence , PO:0009071 - anther wall tapetum , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0025034 - leaf , PO:0020048 - microspore 
23728	ABAR1	OsABAR1	ABA-RESPONSIVE PROTEIN-LIKE PROTEIN 1	ABA-responsive protein-like protein 1	ABA-RESPONSIVE PROTEIN-LIKE PROTEIN 1	Osabar1	4	a Glucosyltransferases-like GTPase activators and Myotubularin (GRAM) domain-containing protein.	 Tolerance and resistance - Stress tolerance	Os04g0526800	LOC_Os04g44500.1				GO:0009737 - response to abscisic acid stimulus, GO:0009687 - abscisic acid metabolic process, GO:0009651 - response to salt stress, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root 
23730	NRPD1A	OsNRPD1a	_NUCLEAR RNA POLYMERASE D1A	NUCLEAR RNA POLYMERASE D1a	_NUCLEAR RNA POLYMERASE D1A	osnrpd1, osnrpd1a	4	a largest subunit of RNA POLYMERASE IV (Pol IV).	 Tolerance and resistance - Disease resistance,  Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Culm	Os04g0572600	LOC_Os04g48370.1				GO:0030422 - production of siRNA involved in RNA interference, GO:0009615 - response to virus, GO:0051607 - defense response to virus, GO:0001618 - viral receptor activity, GO:0006306 - DNA methylation	TO:0000207 - plant height, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000547 - primary branch number, TO:0006032 - panicle size, TO:0000040 - panicle length, TO:0000346 - tiller number	
23731	NRPD1B	OsNRPD1b	_			osnrpd1, osnrpd1b	9	a largest subunit of RNA POLYMERASE IV (Pol IV). GO:1901259: chloroplast rRNA processing. 	 Reproductive organ - Panicle, Mode of branching,  Vegetative organ - Culm,  Tolerance and resistance - Disease resistance	Os09g0555200	LOC_Os09g38268.1				GO:0030422 - production of siRNA involved in RNA interference, GO:0051607 - defense response to virus, GO:0009658 - chloroplast organization, GO:0009615 - response to virus, GO:0009507 - chloroplast, GO:0006306 - DNA methylation	TO:0000207 - plant height, TO:0000213 - rice grassy stunt 1 and 2 virus resistance, TO:0000547 - primary branch number, TO:0006032 - panicle size, TO:0000040 - panicle length, TO:0000346 - tiller number	
23732	LRR-RLK2	OsLRR-RLK2	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 2	leucine-rich repeat receptor-like kinase 2	LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 2		10		 Tolerance and resistance - Insect resistance	Os10g0119200	LOC_Os10g02970.1				GO:0002213 - defense response to insect, GO:0005524 - ATP binding, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0009873 - ethylene mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010597 - green leaf volatile biosynthetic process, GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane	TO:0000424 - brown planthopper resistance, TO:0002668 - jasmonic acid content, TO:0000605 - hydrogen peroxide content	
23733	OM64	OsOM64	MITOCHONDRIAL OUTER MEMBRANE PROTEIN 64 	mitochondrial outer membrane protein 64	MITOCHONDRIAL OUTER MEMBRANE PROTEIN 64 	om64	2	GO:0071588: hydrogen peroxide mediated signaling pathway.	 Tolerance and resistance - Insect resistance	Os02g0754500	LOC_Os02g51810.2, LOC_Os02g51810.1				GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0002213 - defense response to insect, GO:0016021 - integral to membrane, GO:0005739 - mitochondrion, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0030150 - protein import into mitochondrial matrix, GO:0005741 - mitochondrial outer membrane, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0080027 - response to herbivore	TO:0000605 - hydrogen peroxide content, TO:0000424 - brown planthopper resistance, TO:0000454 - stem borer resistance, TO:0002668 - jasmonic acid content	
23734	ACE1	OsACE1, OsSIN, SIN	ACCELERATOR OF INTERNODE ELONGATION 1	SHORT INTERNODES	ACCELERATOR OF INTERNODE ELONGATION 1		3	ACE1 was present in both Ob and Og (Shang et al. 2022).	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os03g0346200	LOC_Os03g22510.1				GO:0009686 - gibberellin biosynthetic process, GO:0030912 - response to deep water, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0080006 - internode patterning, GO:0051781 - positive regulation of cell division, GO:0009909 - regulation of flower development	TO:0000068 - lodging incidence, TO:0000145 - internode length, TO:0000237 - water stress trait, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0002675 - gibberellic acid content	PO:0007089 - stem elongation stage 
23735	PQT3	OsPQT3	PARAQUAT TOLERANCE 3			ospqt3	10	GO:0061630: ubiquitin protein ligase activity. a homologue of Arabidopsis PARAQUAT TOLERANCE 3.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity	Os10g0431000	LOC_Os10g29560.1				GO:0009635 - response to herbicide, GO:0003676 - nucleic acid binding, GO:0008270 - zinc ion binding, GO:0006397 - mRNA processing, GO:0006979 - response to oxidative stress, GO:0009628 - response to abiotic stimulus, GO:0009651 - response to salt stress	TO:0000168 - abiotic stress trait, TO:0000058 - herbicide sensitivity, TO:0000346 - tiller number, TO:0006032 - panicle size, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000396 - grain yield	
23736	DX1	OsDX1	_				12	PO:0030123: panicle inflorescence.		Os12g0515800	LOC_Os12g33120.1						PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf 
23737	MAPKKK63	OsMAPKKK63	MAP KINASE KINASE KINASE 63	MAP kinase kinase kinase 63	MAP KINASE KINASE KINASE 63		1		 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy	Os01g0699100	LOC_Os01g50370.1				GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0048623 - seed germination on parent plant, GO:0010231 - maintenance of seed dormancy, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0000430 - germination rate, TO:0000619 - vivipary, TO:0000253 - seed dormancy, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
23738	CYP78A11	Cyt P450 78A11, OsCYP78A11	P450 78A11	Cytochrome P450 78A11	P450 78A11		3		 Biochemical character	Os03g0603100	LOC_Os03g40600.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding		
23739	CYP71E1	Cyt P450 71E1, OsCYP71E1, OsCYP71E2, CYP71E2	P450 71E1	Cytochrome P450 71E1	P450 71E1		3	BGIOSGA012992. OsCYP71E2 in Sahoo et al. 2023.	 Biochemical character	Os03g0568400	LOC_Os03g37070.1				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane		
23740	TAC4	OsTAC4, OsBC17, BC17	TILLER ANGLE CONTROL 4	Tiller Angle Control 4, BRITTLE CULM17, BRITTLE CULM 17		tac4, osbc17	2	TO:0020106: Indole-3-acetic acid content. PO:0030123: panicle inflorescence. 	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Reproductive organ - panicle	Os02g0450000	LOC_Os02g25230.1				GO:0009826 - unidimensional cell growth, GO:0052386 - cell wall thickening, GO:0005634 - nucleus, GO:0009808 - lignin metabolic process, GO:0009926 - auxin polar transport, GO:0009630 - gravitropism	TO:0000567 - tiller angle, TO:0000040 - panicle length, TO:0002672 - auxin content, TO:0002693 - gravity response trait, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000557 - secondary branch number, TO:0000592 - 1000-dehulled grain weight, TO:0000547 - primary branch number, TO:0000200 - brittle culm, TO:0000051 - stem strength, TO:0000731 - lignin content, TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0000068 - lodging incidence	PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0020142 - stem internode , PO:0008017 - leaf sheath pulvinus , PO:0000232 - axillary bud meristem , PO:0020148 - shoot apical meristem 
23741	CUR1	OsCUR1	CURLED LATER 1	curled later1, largest subunit of Elongator complex		cur1	7	GO:0080178: 5-carbamoylmethyl uridine residue modification. GO:2000024: regulation of leaf development. GO:0002926: tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation. GO:1902182: shoot apical meristem development. TO:0000820: leaf vein morphology trait.	 Vegetative organ - Leaf,  Reproductive organ - Heading date	Os07g0563700	LOC_Os07g37640.1				GO:0008284 - positive regulation of cell proliferation, GO:0035265 - organ growth, GO:0031538 - negative regulation of anthocyanin metabolic process, GO:0009965 - leaf morphogenesis, GO:0048530 - fruit morphogenesis, GO:0051301 - cell division, GO:0071215 - cellular response to abscisic acid stimulus, GO:0000049 - tRNA binding, GO:0048507 - meristem development, GO:0048366 - leaf development, GO:0010073 - meristem maintenance, GO:0048573 - photoperiodism, flowering, GO:0005737 - cytoplasm, GO:0002098 - tRNA wobble uridine modification, GO:0033588 - Elongator holoenzyme complex, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0006979 - response to oxidative stress, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0009787 - regulation of abscisic acid mediated signaling	TO:0002681 - leaf curling, TO:0000655 - leaf development trait, TO:0000137 - days to heading, TO:0006020 - shoot apical meristem development, TO:0002616 - flowering time, TO:0000370 - leaf width	PO:0001050 - leaf development stage , PO:0000037 - shoot apex , PO:0001051 - 1 leaf initiation stage 
23742	WSL9	OsWSL9	WHITE STRIPE LEAF 9	white stripe leaf 9		wsl9	3	PO:0030123: panicle inflorescence.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0169800	LOC_Os03g07370.1				GO:0048366 - leaf development, GO:0008380 - RNA splicing, GO:0009266 - response to temperature stimulus, GO:0009658 - chloroplast organization, GO:0003676 - nucleic acid binding, GO:0004519 - endonuclease activity, GO:0009451 - RNA modification	TO:0000326 - leaf color, TO:0000069 - variegated leaf, TO:0000655 - leaf development trait, TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000432 - temperature response trait	PO:0001050 - leaf development stage , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root , PO:0025034 - leaf 
23743	HCF222	OsHCF222	HIGH CHLOROPHYLL FLUORESCENCE 222	HIGH CHLOROPHYLL FLUORESCENCE222			3	rice ortholog of AtHCF222. TO:0006060: leaf chlorosis. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os03g0414400	LOC_Os03g30092.1				GO:0009507 - chloroplast, GO:0042651 - thylakoid membrane, GO:0005783 - endoplasmic reticulum, GO:0009651 - response to salt stress, GO:0010027 - thylakoid membrane organization, GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait, TO:0006001 - salt tolerance, TO:0000326 - leaf color, TO:0000605 - hydrogen peroxide content	
23744	TSCD11	OsTSCD11	TEMPERATURE-SENSITIVE CHLOROPHYLL-DEFICIENT 11	temperature-sensitive chlorophyll-deficient 11		tscd11	11	PO:0030123: panicle inflorescence.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll	Os11g0610900	LOC_Os11g39670.2, LOC_Os11g39670.1				GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0006434 - seryl-tRNA aminoacylation, GO:0048481 - ovule development, GO:0070158 - mitochondrial seryl-tRNA aminoacylation, GO:0000049 - tRNA binding, GO:0005524 - ATP binding, GO:0004828 - serine-tRNA ligase activity, GO:0009658 - chloroplast organization, GO:0009408 - response to heat, GO:0015995 - chlorophyll biosynthetic process, GO:0015979 - photosynthesis, GO:0046466 - membrane lipid catabolic process	TO:0000326 - leaf color, TO:0000259 - heat tolerance, TO:0002715 - chloroplast development trait, TO:0000455 - seed set percent, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000069 - variegated leaf, TO:0000605 - hydrogen peroxide content, TO:0000592 - 1000-dehulled grain weight, TO:0000495 - chlorophyll content	PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root 
23745	D-LDH2	OsD-LDH2, D2HGDH, OsD2HGDH	D-LACTATE DEHYDROGENASE 2	D-lactate dehydrogenase 2, D-2-hydroxyglutarate dehydrogenase	D-LACTATE DEHYDROGENASE 2		7	Q7XI14. GO:0071949: FAD binding. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0187200	LOC_Os07g08950.1				GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0046466 - membrane lipid catabolic process, GO:0005739 - mitochondrion, GO:0051990 - (R)-2-hydroxyglutarate dehydrogenase activity, GO:0051595 - response to methylglyoxal, GO:0009651 - response to salt stress	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance	
23746	_	H4	_	Histone H4			7			Os07g0549900	LOC_Os07g36500.1				GO:0006334 - nucleosome assembly, GO:0042025 - host cell nucleus, GO:0005634 - nucleus, GO:0046982 - protein heterodimerization activity, GO:0000786 - nucleosome, GO:0003677 - DNA binding		
23747	MYB57	OsMYB57	MYB TRANSCRIPTION FACTOR 57 	myb transcription factor 57	MYB TRANSCRIPTION FACTOR 57 										GO:0044419 - interspecies interaction between organisms		
23748	RTP	OsRTP	_	retrotransposon protein			2				LOC_Os02g23820.1						
23749	WHY1	OsWHY1	WHIRLY TRANSCRIPTION FACTOR 1	Whirly transcription factor 1, WHIRLY family protein 1	WHIRLY TRANSCRIPTION FACTOR 1	oswhy1, oswhy1-1, oswhy1-2	2	CT836194. a component of the pTAC (plastid transcriptionally active chromosome) complex. GO:1900865: chloroplast RNA modification.	 Coloration - Chlorophyll,  Vegetative organ - Leaf	Os06g0145800	LOC_Os06g05350.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006952 - defense response, GO:0003697 - single-stranded DNA binding, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0031425 - chloroplast RNA processing, GO:0008380 - RNA splicing, GO:0042254 - ribosome biogenesis, GO:0090069 - regulation of ribosome biogenesis, GO:0010380 - regulation of chlorophyll biosynthetic process	TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content	PO:0025034 - leaf 
23750	WHY2	OsWHY2	WHIRLY TRANSCRIPTION FACTOR 2	Whirly transcription factor 2	WHIRLY TRANSCRIPTION FACTOR 2		2			Os02g0158400	LOC_Os02g06370.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0003697 - single-stranded DNA binding, GO:0006952 - defense response		
23751	CCA	OsCCA	_	cinnamoyl-CoA			3	GO:0051996: squalene synthase activity.	 Biochemical character	Os03g0805100	LOC_Os03g59040.2, LOC_Os03g59040.1				GO:0045338 - farnesyl diphosphate metabolic process, GO:0008610 - lipid biosynthetic process, GO:0004310 - farnesyl-diphosphate farnesyltransferase activity, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane		
23752	CAD	OsCAD, TPS16, OsTPS16	CINNAMOYL ALCOHOL DEHYDROGENASE	cinnamoyl alcohol dehydrogenase, Terpene synthase 16	CINNAMOYL ALCOHOL DEHYDROGENASE		2		 Biochemical character	Os02g0458100	LOC_Os02g26014.1				GO:0010333 - terpene synthase activity, GO:0000287 - magnesium ion binding		
23753	_	PsbE, OsPsbE	_	photosystem II (PSII) complex subunit PsbE			3			Os03g0659233	LOC_Os03g45710.1				GO:0009055 - electron carrier activity, GO:0009535 - chloroplast thylakoid membrane, GO:0009539 - photosystem II reaction center, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
23754	_		_	F-type ATPase alpha, ATP synthase subunit alpha			10	(Q8S7T5).	 Biochemical character						GO:0005524 - ATP binding, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism		
23755	_		_	F-type ATPase delta, ATP synthase subunit delta			2		 Biochemical character	Os02g0750100	LOC_Os02g51470.3, LOC_Os02g51470.2, LOC_Os02g51470.1				GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0009535 - chloroplast thylakoid membrane, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0016020 - membrane, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0015986 - ATP synthesis coupled proton transport, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism		
23756	_		_	F-type ATPase b, ATP synthase subunit b			3		 Biochemical character	Os03g0278900	LOC_Os03g17070.1				GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0015986 - ATP synthesis coupled proton transport, GO:0016021 - integral to membrane, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o)		
23757	DUF292	OsDUF292	DOMAINS OF UNKNOWN FUNCTION PROTEIN 292	domains of unknown function protein 292	DOMAINS OF UNKNOWN FUNCTION PROTEIN 292		3			Os03g0257600	LOC_Os03g15230.1				GO:0008104 - protein localization, GO:0015031 - protein transport		
23758	_	OsPR2	_				1			Os01g0946600	LOC_Os01g71820.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
23759	_	OsNRT1.5, NRT1.5	_	nitrate transporter 1.5	_		7	TO:0020098: nitrate sensitivity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0190650 					GO:0010167 - response to nitrate, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity		
23760	DGAT1-2	OsDGAT1-2	DIACYLGLYCEROL ACYLTRANSFERASE 1-2	diacylglycerol acyltransferase 1-2, type-1 diacylglycerol acyltransferase 2	DIACYLGLYCEROL ACYLTRANSFERASE 1-2		6	A0A0P0WY03.	 Biochemical character	Os06g0563900	LOC_Os06g36800.1				GO:0005789 - endoplasmic reticulum membrane, GO:0008374 - O-acyltransferase activity, GO:0004144 - diacylglycerol O-acyltransferase activity, GO:0016021 - integral to membrane, GO:0006071 - glycerol metabolic process, GO:0009941 - chloroplast envelope, GO:0019432 - triglyceride biosynthetic process		
23761	PGYRP	OSPGYRP	PROLINE-, GLYCINE- AND TYROSINE-RICH PROTEIN	proline-, glycine- and tyrosine-rich protein	PROLINE-, GLYCINE- AND TYROSINE-RICH PROTEIN		7		 Tolerance and resistance - Stress tolerance	Os07g0585500	LOC_Os07g39680.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0016192 - vesicle-mediated transport, GO:0006970 - response to osmotic stress	TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
23762	BRR1	OsBRR1	BLAST RESISTANCE-RELATED 1	blast resistance-related 1	BLAST RESISTANCE-RELATED 1		3		 Tolerance and resistance - Disease resistance	Os03g0228800	LOC_Os03g12730.1				GO:0005524 - ATP binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009755 - hormone-mediated signaling, GO:0004674 - protein serine/threonine kinase activity, GO:0009751 - response to salicylic acid stimulus	TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
23763	SMCP1	OsSMCP1, OsC2DP58, C2DP58	SMALL C2 DOMAIN PROTEIN 1	small C2 domain protein 1, C2 Domain-Containing Protein 58	SMALL C2 DOMAIN PROTEIN 1		7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0108400	LOC_Os07g01770.1				GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009536 - plastid	TO:0000315 - bacterial disease resistance, TO:0000276 - drought tolerance, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress	
23764	BIABP1	OsBIABP1	BTH-INDUCED AMP-BINDING PROTEIN 1	BTH-induced AMP-binding protein 1	BTH-INDUCED AMP-BINDING PROTEIN 1		4		 Tolerance and resistance - Disease resistance	Os04g0674700	LOC_Os04g57850.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0050832 - defense response to fungus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009961 - response to 1-aminocyclopropane-1-carboxylic acid, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009873 - ethylene mediated signaling pathway	TO:0000074 - blast disease	PO:0009047 - stem , PO:0025034 - leaf , PO:0009046 - flower 
23765	PRP3	OsPRP3	PROLINE-RICH PROTEIN 3	proline-rich protein 3	PROLINE-RICH PROTEIN 3		10	GO:0071555: cell wall organization.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os10g0148100	LOC_Os10g05750.1				GO:0009908 - flower development, GO:0009409 - response to cold, GO:0048444 - floral organ morphogenesis	TO:0000303 - cold tolerance, TO:0000622 - flower development trait	PO:0007615 - flower development stage , PO:0009046 - flower 
23766	LKR/SDH	OsLKR/SDH, OsLKR, OsSDH	LYSINE KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE	lysine ketoglutarate reductase/saccharopine dehydrogenase	LYSINE KETOGLUTARATE REDUCTASE/SACCHAROPINE DEHYDROGENASE		2	AB574188. a target of osa-miR171d-5p.	 Seed - Physiological traits - Storage substances	Os02g0783700	LOC_Os02g54254.1, LOC_Os02g54254.4, LOC_Os02g54254.2, LOC_Os02g54254.3				GO:0006554 - lysine catabolic process, GO:0016491 - oxidoreductase activity	TO:0000598 - protein content, TO:0002673 - amino acid content	PO:0009089 - endosperm , PO:0009010 - seed , PO:0005360 - aleurone layer 
23767	GMST1	OsGMST1, OspGlcT2, pGlcT2	GOLGI LOCALIZED MONOSACCHARIDE TRANSPORTER 1	Golgi localized monosaccharide transporter 1, PLASTIDIC GLUCOSE TRANSLOCATOR 2, pGlcT protein 2, monosaccharide transporter pGlcT2	GOLGI LOCALIZED MONOSACCHARIDE TRANSPORTER 1		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0274900	LOC_Os02g17500.2, LOC_Os02g17500.3, LOC_Os02g17500.1				GO:0015749 - monosaccharide transport, GO:0005794 - Golgi apparatus, GO:0009651 - response to salt stress, GO:0008643 - carbohydrate transport, GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0015149 - hexose transmembrane transporter activity	TO:0006001 - salt tolerance, TO:0000333 - sugar content, TO:0006006 - monosaccharide content	
23768	NBS-STR1	NBS-Str1, OsNBS-Str1	_				2	stress-inducible NBS (nucleotide binding site)-LRR (leucine rich repeat) protein.	 Tolerance and resistance - Stress tolerance	Os02g0191000	LOC_Os02g09790.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010042 - response to manganese ion, GO:0046688 - response to copper ion	TO:0000021 - copper sensitivity, TO:0000073 - manganese sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0005020 - vascular bundle , PO:0009005 - root 
23769	BLEC-STR8	BLEC-Str8, OsBLEC-Str8	_				4	stress-inducible beta-lectin domain protein.	 Tolerance and resistance - Stress tolerance	Os04g0110100	LOC_Os04g01950.1				GO:0010042 - response to manganese ion, GO:0046688 - response to copper ion, GO:0009651 - response to salt stress, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0030246 - carbohydrate binding	TO:0000073 - manganese sensitivity, TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity	PO:0006070 - mesophyll , PO:0009015 - portion of vascular tissue 
23770	RIP18	OSRIP18, RA39, OsRA39, OSjRIP7.2, RIP7.2	RIBOSOME-INACTIVATING PROTEIN 18	Ribosome-inactivating protein 18	RIBOSOME-INACTIVATING PROTEIN 18		7	AB053261. GO:0090729: toxin activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0556800	LOC_Os07g37090.1				GO:0009414 - response to water deprivation, GO:0030598 - rRNA N-glycosylase activity, GO:0006952 - defense response, GO:0009651 - response to salt stress, GO:0017148 - negative regulation of translation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025545 - anther wall tapetum cell 
23771	LFR	OsLFR	LEAF AND FLOWER-RELATED			oslfr, oslfr-1, oslfr-cr, oslfr-cr1, oslfr-cr2, oslfr-cr3	7	an ortholog of the Arabidopsis SWI/SNF chromatin-remodeling complex (CRC) component LFR.	 Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Embryo	Os07g0609766	LOC_Os07g41900.1				GO:0009960 - endosperm development, GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0006338 - chromatin remodeling, GO:0016514 - SWI/SNF complex, GO:0005654 - nucleoplasm, GO:0035060 - brahma complex, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0048366 - leaf development, GO:0043044 - ATP-dependent chromatin remodeling, GO:0048653 - anther development, GO:0010342 - cellularization of endosperm, GO:0000280 - nuclear division, GO:0010941 - regulation of cell death, GO:0007389 - pattern specification process, GO:0051302 - regulation of cell division	TO:0000064 - embryo related trait, TO:0000345 - seed viability, TO:0000620 - embryo development trait, TO:0000575 - endosperm related trait	PO:0007633 - endosperm development stage , PO:0009051 - spikelet , PO:0007631 - plant embryo stage , PO:0009010 - seed 
23772	DRL1	OsDRL1, qSOR1, qSOR1/DRL1/OsNGR2, OsNGR2, NGR2	DRO1-LIKE 1	DRO1-like 1, DEEPER ROOTING 1-like 1, quantitative trait locus for SOIL SURFACE ROOTING 1	DRO1-LIKE 1	qsor1	7	LC494454, LC494455. early auxin response protein.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os07g0614400	LOC_Os07g42290.1				GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0009629 - response to gravity	TO:0000163 - auxin sensitivity, TO:0002693 - gravity response trait, TO:0000153 - relative yield, TO:0006001 - salt tolerance, TO:0000043 - root anatomy and morphology trait	PO:0020132 - columella root cap cell , PO:0009005 - root 
23773	DRL2	OsDRL2	DRO1-LIKE 2	DRO1-like 2, DEEPER ROOTING 1-like 2	DRO1-LIKE 2		3		 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os03g0180600	LOC_Os03g08290.1				GO:0009629 - response to gravity	TO:0002693 - gravity response trait, TO:0000043 - root anatomy and morphology trait	
23774	DRL3	OsDRL3, DRL3/OsNGR1, OsNGR1, NGR1	DRO1-LIKE 3	DRO1-like 3, DEEPER ROOTING 1-like 3	DRO1-LIKE 3		3			Os03g0406300	LOC_Os03g29270.1						
23775	_	OsACO1, ACO1	_	aconitase 1			3	GO:1990641: response to iron ion starvation. TO:0006049: iron concentration.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0136900	LOC_Os03g04410.1				GO:0055072 - iron ion homeostasis, GO:0003723 - RNA binding, GO:0005739 - mitochondrion, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0005829 - cytosol, GO:0046872 - metal ion binding, GO:0003994 - aconitate hydratase activity, GO:0047780 - citrate dehydratase activity, GO:0006101 - citrate metabolic process, GO:0009651 - response to salt stress, GO:0006099 - tricarboxylic acid cycle	TO:0000224 - iron sensitivity	
23776	SYF2	OsSYF2	SYNTHETIC LETHAL WITH CDC FORTY 2	Synthetic lethal with cdc forty 2			6	GO:0000974: Prp19 complex. TO:0000847: panicle inflorescence morphology trait.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - panicle	Os06g0711600	LOC_Os06g49740.2, LOC_Os06g49740.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0071014 - post-mRNA release spliceosomal complex, GO:0071013 - catalytic step 2 spliceosome, GO:0080050 - regulation of seed development, GO:0010468 - regulation of gene expression, GO:0006109 - regulation of carbohydrate metabolic process, GO:0001558 - regulation of cell growth, GO:0006397 - mRNA processing, GO:0010229 - inflorescence development	TO:0000207 - plant height, TO:0000050 - inflorescence branching, TO:0000396 - grain yield, TO:0002730 - grain shape, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000040 - panicle length	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
23777	MYB106	OsMYB106, Os2R_MYB77, 2R_MYB77	MYB TRANSCRIPTION FACTOR 106	MYB transcription factor 106, R2R3-MYB Transcription Factor 77	MYB TRANSCRIPTION FACTOR 106	osmyb106, osmyb106-1, osmyb106-2	8	GO:1903426: regulation of reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance	Os08g0433400	LOC_Os08g33660.1				GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0055078 - sodium ion homeostasis, GO:0009651 - response to salt stress, GO:0055075 - potassium ion homeostasis	TO:0000609 - potassium content, TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000608 - sodium content	
23778	SPL-D	OsGRDP1, GRDP1, OsSPL-D	SPOTTED LEAF D	glycine-rich domain protein 1, spotted leaf D	GLYCINE-RICH DOMAIN PROTEIN 1	spl-D	11		 Tolerance and resistance - Disease resistance	Os11g0621300	LOC_Os11g40590.3, LOC_Os11g40590.2, LOC_Os11g40590.1				GO:0042742 - defense response to bacterium, GO:0031347 - regulation of defense response, GO:0010941 - regulation of cell death, GO:0005829 - cytosol, GO:0016020 - membrane, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0010150 - leaf senescence, GO:0050832 - defense response to fungus	TO:0000207 - plant height, TO:0000397 - grain size, TO:0000063 - mimic response, TO:0000495 - chlorophyll content, TO:0000175 - bacterial blight disease resistance, TO:0000112 - disease resistance, TO:0000269 - 100-seed weight, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease, TO:0000249 - leaf senescence	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0000003 - whole plant 
23779	ZBED	OsZBED, OsPHD2, PHD2	ZN-FINGER BED DOMAIN PROTEIN	Zn-finger BED domain protein, Plant homeo-domain finger protein 2, PHD finger protein 2	ZN-FINGER BED DOMAIN PROTEIN		1	BGIOSGA001450. B8A9Z8 (indica).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0547200	LOC_Os01g36670.1				GO:0042393 - histone binding, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0003712 - transcription cofactor activity, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0080134 - regulation of response to stress, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0000785 - chromatin, GO:0031347 - regulation of defense response, GO:0003677 - DNA binding	TO:0000074 - blast disease, TO:0000276 - drought tolerance	
23780	KIP1	OsKIP1	KINASE INTERACTING PROTEIN 1	kinase interacting protein 1	KINASE INTERACTING PROTEIN 1		1			Os01g0168100	LOC_Os01g07370.2, LOC_Os01g07370.1				GO:0003779 - actin binding, GO:0005774 - vacuolar membrane, GO:0016301 - kinase activity		
23781	STE11	OsSTE11, OsMKKK55, MKKK55	MAPK KINASE KINASE 55	Mitogen Activated Protein Kinase Kinase Kinase 55	MAPK KINASE KINASE 55	osmkkk55	1		 Tolerance and resistance - Stress tolerance	Os01g0699400	LOC_Os01g50400.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		PO:0009066 - anther 
23782	SYL2	OsSYL2	STYLE LENGTH 2	style length 2		OsSYL2AA, OsSYL2CC	2	TO:0011009: style length.	 Reproductive organ - Spikelet, flower, glume, awn	Os02g0733900	LOC_Os02g50110.1						
23783	SIRP4	OsSIRP4, OsRING8, RING8	SALT-INDUCED RING FINGER PROTEIN 4	salt-induced RING finger protein 4, RING-type E3 ubiquitin ligase 8	SALT-INDUCED RING FINGER PROTEIN 4		4	GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os04g0105100	LOC_Os04g01490.2, LOC_Os04g01490.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0005829 - cytosol, GO:0008270 - zinc ion binding, GO:0016874 - ligase activity, GO:0010498 - proteasomal protein catabolic process, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000605 - hydrogen peroxide content, TO:0001016 - relative chlorophyll content, TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000340 - total soluble sugar content	
23784	CYP92C21	OsCYP92C21, OsCYP71AB7, CYP71AB7	CYTOCHROME P450 92C21	Cytochrome P450 92C21, homoterpene synthase	CYTOCHROME P450 92C21	CYP92C21delta1, CYP92C21delta16	3	responsible for homoterpene biosynthesis. BGIOSGA010140. OsCYP71AB7 in Sahoo et al. 2023.	 Tolerance and resistance - Insect resistance,  Biochemical character	Os03g0650200	LOC_Os03g44740.1				GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0002213 - defense response to insect, GO:0002238 - response to molecule of fungal origin, GO:0005783 - endoplasmic reticulum, GO:0046677 - response to antibiotic, GO:0004497 - monooxygenase activity, GO:0009809 - lignin biosynthetic process, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding	TO:0000261 - insect damage resistance	
23785	TIF1	OsTIF1	TAA1 TRANSCRIPTIONAL INHIBITION FACTOR 1	TAA1 transcriptional inhibition factor 1	TAA1 TRANSCRIPTIONAL INHIBITION FACTOR 1		4	TO:0000929: fruit growth and development trait. TO:0020106: Indole-3-acetic acid content.	 Character as QTL - Yield and productivity,  Seed	Os04g0115500	LOC_Os04g02510.1				GO:0010252 - auxin homeostasis, GO:0010154 - fruit development, GO:0005783 - endoplasmic reticulum, GO:0010600 - regulation of auxin biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus	TO:0002672 - auxin content, TO:0000163 - auxin sensitivity	PO:0001002 - fruit development stage 
23786	TIF2	OsTIF2	TAA1 TRANSCRIPTIONAL INHIBITION FACTOR 2	TAA1 transcriptional inhibition factor 2	TAA1 TRANSCRIPTIONAL INHIBITION FACTOR 2		4			Os04g0690100	LOC_Os04g59380.1						
23787	GCS1	OsGCS1, OsHAP2(GCS1), OsHAP2, HAP2	GENERATIVE CELL SPECIFIC1	generative cell-specific protein 1, HAPLESS2	GENERATIVE CELL SPECIFIC1	osgcs1	5	Q5W6B9. responsible for rice POEMed (pollen tube-dependent ovule enlargement morphology) -like phenotype	 Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm	Os05g0269500	LOC_Os05g18730.1				GO:0010581 - regulation of starch biosynthetic process, GO:0005789 - endoplasmic reticulum membrane, GO:0008289 - lipid binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0009566 - fertilization	TO:0000333 - sugar content, TO:0000189 - embryoless, TO:0000696 - starch content, TO:0000231 - endospermless, TO:0000328 - sucrose content	PO:0025121 - pollen sperm cell 
23788	_		GCS1-LIKE	OsGCS1-like, generative cell-specific protein 1-like	GCS1-LIKE	osgcs1-like	9	B9G4M9. responsible for rice POEMed (pollen tube-dependent ovule enlargement morphology) -like phenotype. GO:0061936: fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm.	 Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm,  Reproductive organ - Pollination, fertilization, fertility	Os09g0525700	LOC_Os09g35720.1				GO:0005886 - plasma membrane, GO:0010581 - regulation of starch biosynthetic process, GO:0009566 - fertilization, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0008289 - lipid binding, GO:0048235 - pollen sperm cell differentiation, GO:0005783 - endoplasmic reticulum, GO:0005887 - integral to plasma membrane	TO:0000696 - starch content, TO:0000231 - endospermless, TO:0000189 - embryoless	PO:0025121 - pollen sperm cell 
23789	SLG1	OsSLG1, RCTU2, CTU2, OsCTU2	SLENDER GUY 1	Slender Guy 1, cytosolic tRNA 2-thiolation protein 2	CYTOSOLIC TRNA 2-THIOLATION PROTEIN 2	slg1, SLG1Tej, SLG1Trj, SLG1Ind, SLG1Aus	12	Q2QMW0.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0588900	LOC_Os12g39840.1				GO:0009408 - response to heat, GO:0016779 - nucleotidyltransferase activity, GO:0016783 - sulfurtransferase activity, GO:0000049 - tRNA binding, GO:0032447 - protein urmylation, GO:0002143 - wobble position uridine thiolation, GO:0005829 - cytosol, GO:0034227 - tRNA thio-modification, GO:0002098 - tRNA wobble uridine modification, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
23790	CTU1	RCTU1, OsCTU1	CYTOSOLIC TRNA 2-THIOLATION PROTEIN 1	rice CTU1 protein, cytosolic tRNA 2-thiolation protein 1	CYTOSOLIC TRNA 2-THIOLATION PROTEIN 1		2	Q6Z6G6.	 Biochemical character	Os02g0762300	LOC_Os02g52470.2, LOC_Os02g52470.1				GO:0002144 - cytosolic tRNA wobble base thiouridylase complex, GO:0002143 - wobble position uridine thiolation, GO:0032447 - protein urmylation, GO:0000049 - tRNA binding, GO:0016779 - nucleotidyltransferase activity		
23791	KEAP1	OsKEAP1	KELCH-LIKE ECH-ASSOCIATED PROTEIN 1	Kelch-like ECH-associated protein 1	KELCH-LIKE ECH-ASSOCIATED PROTEIN 1	oskeap1-1, oskeap1-2	1	TO:0000905: seed yield trait. TO:0001109: grain color trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os01g0162500	LOC_Os01g06890.1				GO:0042542 - response to hydrogen peroxide, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0051775 - response to redox state, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0048316 - seed development, GO:0005737 - cytoplasm	TO:0002657 - oxidative stress, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000440 - grain number per plant, TO:0000455 - seed set percent, TO:0000605 - hydrogen peroxide content, TO:0000430 - germination rate, TO:0000437 - male sterility, TO:0006001 - salt tolerance, TO:0000653 - seed development trait, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0002730 - grain shape	PO:0001170 - seed development stage , PO:0007057 - 0 seed germination stage 
23792	NRP4	OsNRP4	N-RICH PROTEIN 4	KEAP1-like gene, N-rich protein 4	N-RICH PROTEIN 4		5	a close paralog of OsKEAP1.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0164900	LOC_Os05g07220.2, LOC_Os05g07220.1				GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000074 - blast disease	
23793	IRL	OsIRL	ISOFLAVONE REDUCTASE-LIKE PROTEIN	isoflavone reductase-like gene	ISOFLAVONE REDUCTASE-LIKE PROTEIN		1	AY071920.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0106400	LOC_Os01g01660.1				GO:0000302 - response to reactive oxygen species, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0002238 - response to molecule of fungal origin, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0050832 - defense response to fungus	TO:0002657 - oxidative stress, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity	
23794	T20	OsT20, Z-ISO, HTD12, OsHTD12	TILLERING 20	tillering20, zeta-Carotene Isomerase, HIGH-TILLERING AND DWARF 12	Z-CAROTENE ISOMERASE	t20, t20-2, t20-3, htd12	12	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity.  GO:1901601: strigolactone biosynthetic process.	 Biochemical character,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os12g0405200	LOC_Os12g21710.1				GO:0009658 - chloroplast organization, GO:0016021 - integral to membrane, GO:0009507 - chloroplast, GO:0016120 - carotene biosynthetic process, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010109 - regulation of photosynthesis, GO:0016117 - carotenoid biosynthetic process, GO:0009688 - abscisic acid biosynthetic process	TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content, TO:0000095 - osmotic response sensitivity, TO:0000329 - tillering ability, TO:0000207 - plant height, TO:0002667 - abscisic acid content, TO:0000145 - internode length, TO:0006001 - salt tolerance, TO:0000346 - tiller number, TO:0000326 - leaf color, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0005004 - shoot node , PO:0004709 - axillary bud , PO:0020142 - stem internode 
23795	_	OsPSKR1, PSKR1	_	Phytosulfokine Receptor 1			2		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0116700	LOC_Os02g02490.1				GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0005524 - ATP binding	TO:0000074 - blast disease, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009030 - carpel 
23796	PSKR13	OsPSKR13	PHYTOSULFOKINE RECEPTOR 13	Phytosulfokine Receptor 13	PHYTOSULFOKINE RECEPTOR 13		6			Os06g0692500	LOC_Os06g47740.1				GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		PO:0009005 - root , PO:0009030 - carpel 
23797	PSKR14	OsPSKR14	PHYTOSULFOKINE RECEPTOR 14	Phytosulfokine Receptor 14	PHYTOSULFOKINE RECEPTOR 14		6		 Seed	Os06g0692600	LOC_Os06g47750.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0046777 - protein amino acid autophosphorylation, GO:0005886 - plasma membrane, GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0009009 - plant embryo , PO:0001170 - seed development stage , PO:0025034 - leaf 
23798	CPSRP54B	OscpSRP54b, cpSRP54b	CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54B	chloroplast signal recognition particle 54b	CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54B		11	TO:0012004: quantum yield.	 Coloration - Chlorophyll,  Character as QTL - Plant growth activity,  Vegetative organ - Leaf	Os11g0153700	LOC_Os11g05556.2, LOC_Os11g05556.1				GO:0016037 - absorption of light, GO:0015979 - photosynthesis, GO:0005525 - GTP binding, GO:0005786 - signal recognition particle, endoplasmic reticulum targeting, GO:0006614 - SRP-dependent cotranslational protein targeting to membrane, GO:0009658 - chloroplast organization, GO:0008312 - 7S RNA binding, GO:0003924 - GTPase activity, GO:0009507 - chloroplast	TO:0000495 - chlorophyll content, TO:0000455 - seed set percent, TO:0002715 - chloroplast development trait, TO:0000207 - plant height, TO:0000326 - leaf color, TO:0000316 - photosynthetic ability	PO:0009006 - shoot system , PO:0025034 - leaf 
23799	UBL5.1	OsUBL5.1	UBIQUITIN-LIKE PROTEIN 5.1	Ubiquitin-Like protein 5.1	UBIQUITIN-LIKE PROTEIN 5.1		2		 Tolerance and resistance - Disease resistance	Os02g0628800	LOC_Os02g41820.1				GO:0005737 - cytoplasm, GO:0051607 - defense response to virus, GO:0005634 - nucleus, GO:0006464 - protein modification process, GO:0031386 - protein tag	TO:0000148 - viral disease resistance	
23800	UBL5.2	OsUBL5.2	UBIQUITIN-LIKE PROTEIN 5.2	Ubiquitin-Like protein 5.2	UBIQUITIN-LIKE PROTEIN 5.2		11		 Tolerance and resistance - Disease resistance	Os11g0145400	LOC_Os11g04880.1				GO:0031386 - protein tag, GO:0006464 - protein modification process, GO:0051607 - defense response to virus, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000148 - viral disease resistance	
23801	RPN13	OsRPN13	REGULATORY PARTICLE NON-ATPASE SUBUNIT 13	regulatory particle non-ATPase subunit 13, RP non-ATPase 13	REGULATORY PARTICLE NON-ATPASE SUBUNIT 13		5		 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0594800	LOC_Os05g51640.2, LOC_Os05g51640.1				GO:0043130 - ubiquitin binding, GO:0000502 - proteasome complex, GO:0070628 - proteasome binding, GO:0005737 - cytoplasm, GO:0061133 - endopeptidase activator activity, GO:0005634 - nucleus, GO:0006511 - ubiquitin-dependent protein catabolic process		
23802	_		_	OsSRS gene family			1	SHI-Related Sequence (OsSRS) Gene Family. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os01g0954500	LOC_Os01g72490.2, LOC_Os01g72490.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0009739 - response to gibberellin stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	PO:0009030 - carpel , PO:0009066 - anther , PO:0009010 - seed , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
23803	_		_	OsSRS gene family			5	SHI-Related Sequence (OsSRS) Gene Family. PO:0030123: panicle inflorescence.		Os05g0386201	LOC_Os05g32070.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0016020 - membrane		PO:0025034 - leaf , PO:0009066 - anther , PO:0009006 - shoot system , PO:0009030 - carpel , PO:0009005 - root 
23804	_		_	OsSRS gene family			6	SHI-Related Sequence (OsSRS) Gene Family. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os06g0712600	LOC_Os06g49830.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0016020 - membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009066 - anther , PO:0009030 - carpel , PO:0009005 - root 
23805	_		_	OsSRS gene family			8	SHI-Related Sequence (OsSRS) Gene Family. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0547600	LOC_Os08g43410.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0045893 - positive regulation of transcription, DNA-dependent	TO:0000276 - drought tolerance	PO:0009006 - shoot system , PO:0009005 - root , PO:0009066 - anther , PO:0009030 - carpel , PO:0025034 - leaf , PO:0009010 - seed 
23806	PHD1	OsPHD1, OsAL1.2, AL1.2, OsAL1, AL1	PHD FINGER PROTEIN 1	Plant homeo-domain finger protein 1, PHD finger protein 1, Alfin-like 1.2	PHD FINGER PROTEIN 1		1	BGIOSGA000361. A2WXR5 (indica), Q7F2Z1 (japonica). osa-miR1858a, osa-miR1858b, osa-miR5075, osa-miR2925 target gene. OsAL1 in Rahman et al. 2024. GO:0000976: transcription regulatory region sequence-specific DNA binding. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0887700	LOC_Os01g66420.2, LOC_Os01g66420.1				GO:0009408 - response to heat, GO:0003712 - transcription cofactor activity, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0051607 - defense response to virus, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0030912 - response to deep water, GO:0009733 - response to auxin stimulus, GO:0009409 - response to cold, GO:0010446 - response to alkalinity, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009269 - response to desiccation, GO:0006970 - response to osmotic stress, GO:0006325 - chromatin organization, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000524 - submergence tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000276 - drought tolerance, TO:0000481 - alkali sensitivity, TO:0000163 - auxin sensitivity	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009009 - plant embryo , PO:0009005 - root , PO:0005052 - plant callus , PO:0009030 - carpel , PO:0009006 - shoot system , PO:0009010 - seed 
23807	PHD3	OsPHD3	PHD FINGER PROTEIN 3	Plant homeo-domain finger protein 3, PHD finger protein 3	PHD FINGER PROTEIN 3		1	BGIOSGA002118. B8AAL1 (indica).		Os01g0218900	LOC_Os01g11960.2, LOC_Os01g11960.1				GO:0046872 - metal ion binding		
23808	PHD5	OsPHD5	PHD FINGER PROTEIN 5	Plant homeo-domain finger protein 5, PHD finger protein 5	PHD FINGER PROTEIN 5		1	BGIOSGA004914. A2WXJ6 (indica). 	 Tolerance and resistance - Stress tolerance	Os01g0877500	LOC_Os01g65600.1				GO:0046872 - metal ion binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
23809	PHD6	OsPHD6	PHD FINGER PROTEIN 6	Plant homeo-domain finger protein 6, PHD finger protein 6	PHD FINGER PROTEIN 6		1	BGIOSGA004932. A2WXN6 (indica). 	 Tolerance and resistance - Stress tolerance	Os01g0883400	LOC_Os01g66070.1				GO:0016021 - integral to membrane, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0009651 - response to salt stress, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0003712 - transcription cofactor activity, GO:0000785 - chromatin, GO:0045892 - negative regulation of transcription, DNA-dependent	TO:0006001 - salt tolerance	
23810	PHD9	OsPHD9, OsAL2, AL2	PHD FINGER PROTEIN 9	Plant homeo-domain finger protein 9, PHD finger protein 9, Alfin-like 2, Alfin-like transcription factor 2	PHD FINGER PROTEIN 9		2	BGIOSGA008446. B8ADZ3 (indica). Q6Z7F4 (japonica). osa-miR5815, osa-miR1440b target gene. GO:0000976: transcription regulatory region sequence-specific DNA binding. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os02g0564100	LOC_Os02g35600.1				GO:0051607 - defense response to virus, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009269 - response to desiccation, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0003712 - transcription cofactor activity, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009735 - response to cytokinin stimulus, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0009723 - response to ethylene stimulus, GO:0005634 - nucleus	TO:0000259 - heat tolerance, TO:0000173 - ethylene sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000203 - bacterial leaf streak disease resistance, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000075 - light sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0002657 - oxidative stress	PO:0009066 - anther , PO:0025034 - leaf , PO:0009030 - carpel , PO:0009005 - root , PO:0009009 - plant embryo , PO:0005052 - plant callus , PO:0009010 - seed , PO:0009049 - inflorescence , PO:0009006 - shoot system 
23811	PHD10	OsPHD10	PHD FINGER PROTEIN 10	Plant homeo-domain finger protein 10, PHD finger protein 10	PHD FINGER PROTEIN 10		2	BGIOSGA008941. A2X907 (indica).		Os02g0720000	LOC_Os02g48810.1						
23812	PHD16	OsPHD16	PHD FINGER PROTEIN 16	Plant homeo-domain finger protein 16, PHD finger protein 16	PHD FINGER PROTEIN 16		3	BGIOSGA013552. B8AJV6 (indica). GO:0000977: RNA polymerase II transcription regulatory region sequence-specific DNA binding. GO:0000976: transcription regulatory region sequence-specific DNA binding.		Os03g0747600	LOC_Os03g53630.1				GO:0042393 - histone binding, GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0008080 - N-acetyltransferase activity, GO:0046872 - metal ion binding, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0003714 - transcription corepressor activity, GO:0003682 - chromatin binding		
23813	PHD18	OsPHD18	PHD FINGER PROTEIN 18	Plant homeo-domain finger protein 18, PHD finger protein 18	PHD FINGER PROTEIN 18		4	BGIOSGA014033. B8AS61 (indica). 		Os04g0691700	LOC_Os04g59510.1				GO:0046872 - metal ion binding, GO:0008080 - N-acetyltransferase activity		
23814	PHD19	OsPHD19	PHD FINGER PROTEIN 19	Plant homeo-domain finger protein 19, PHD finger protein 19	PHD FINGER PROTEIN 19		4	BGIOSGA014376. B8ATX2 (indica). 	 Tolerance and resistance - Stress tolerance	Os04g0609700	LOC_Os04g52020.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0042393 - histone binding, GO:0046872 - metal ion binding, GO:0031490 - chromatin DNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
23815	PHD20	OsPHD20	PHD FINGER PROTEIN 20	Plant homeo-domain finger protein 20, PHD finger protein 20	PHD FINGER PROTEIN 20		4	BGIOSGA016418. B8ATR2 (indica). 		Os04g0425100	LOC_Os04g34720.2, LOC_Os04g34720.1				GO:0003712 - transcription cofactor activity, GO:0042393 - histone binding, GO:0008270 - zinc ion binding, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0000785 - chromatin		
23816	PHD21	OsPHD21, OsAL4, AL4	PHD FINGER PROTEIN 21	Plant homeo-domain finger protein 21, PHD finger protein 21, Alfin-like 4, Alfin-like transcription factor 4	PHD FINGER PROTEIN 21		4	BGIOSGA016480. A2XTW9 (indica). Q7XUW3 (japonica). osa-miR5832, osa-miR5075, osa-miR2925 target gene. GO:0000976: transcription regulatory region sequence-specific DNA binding.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0444900	LOC_Os04g36730.1				GO:0009739 - response to gibberellin stimulus, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0051607 - defense response to virus, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009269 - response to desiccation, GO:0006970 - response to osmotic stress, GO:0009735 - response to cytokinin stimulus, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0006325 - chromatin organization, GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0042393 - histone binding, GO:0003712 - transcription cofactor activity, GO:0009753 - response to jasmonic acid stimulus	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000015 - oxygen sensitivity, TO:0000173 - ethylene sensitivity, TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000163 - auxin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000148 - viral disease resistance	
23817	PHD22	OsPHD22, OsAL5.1, AL5.1, OsAL5, AL5	PHD FINGER PROTEIN 22	Plant homeo-domain finger protein 22, PHD finger protein 22, Alfin-like 5.1, Alfin-like transcription factor 5	PHD FINGER PROTEIN 22		5	BGIOSGA018756. A2Y0Q2 (indica). Q75IR6 (japonica). osa-miR1858a, osa-miR444b.2 target gene. OsAL5 in Rahman et al. 2024. GO:0000976: transcription regulatory region sequence-specific DNA binding.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0163100	LOC_Os05g07040.1				GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0006970 - response to osmotic stress, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0042742 - defense response to bacterium, GO:0051607 - defense response to virus, GO:0009651 - response to salt stress, GO:0034059 - response to anoxia, GO:0009414 - response to water deprivation, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006325 - chromatin organization, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0003712 - transcription cofactor activity	TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000203 - bacterial leaf streak disease resistance, TO:0000148 - viral disease resistance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000015 - oxygen sensitivity	PO:0009066 - anther 
23818	PHD24	OsPHD24, OsAL5.2, AL5.2, OsAL6, AL6	PHD FINGER PROTEIN 24	Plant homeo-domain finger protein 24, PHD finger protein 24, Alfin-like 5.2, Alfin-like transcription factor 6	PHD FINGER PROTEIN 24		5	BGIOSGA019887. A2Y4R8 (indica). Q60DW3 (japonica). osa-miR1858a, osa-miR812k target gene. OsAL6 in Rahman et al. 2024. GO:0000976: transcription regulatory region sequence-specific DNA binding.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0419100	LOC_Os05g34640.1				GO:0009269 - response to desiccation, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0006325 - chromatin organization, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0003712 - transcription cofactor activity, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0051607 - defense response to virus, GO:0034059 - response to anoxia, GO:0009414 - response to water deprivation, GO:0010446 - response to alkalinity, GO:0009733 - response to auxin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus	TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance, TO:0000481 - alkali sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009010 - seed , PO:0009006 - shoot system 
23819	PHD25	OsPHD25	PHD FINGER PROTEIN 25	Plant homeo-domain finger protein 25, PHD finger protein 25	PHD FINGER PROTEIN 25		6	BGIOSGA020494. B8B2Y1 (indica).		Os06g0731600					GO:0003677 - DNA binding, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0034647 - histone demethylase activity (H3-trimethyl-K4 specific), GO:0006338 - chromatin remodeling, GO:0032452 - histone demethylase activity, GO:0035097 - histone methyltransferase complex		
23820	PHD26	OsPHD26	PHD FINGER PROTEIN 26	Plant homeo-domain finger protein 26, PHD finger protein 26	PHD FINGER PROTEIN 26		6	BGIOSGA020496. A2YH89 (indica). GO:0000977: RNA polymerase II transcription regulatory region sequence-specific DNA binding. GO:0000976: transcription regulatory region sequence-specific DNA binding.		Os06g0731100	LOC_Os06g51450.1				GO:0046872 - metal ion binding, GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0042393 - histone binding		
23821	PHD27	OsPHD27	PHD FINGER PROTEIN 27	Plant homeo-domain finger protein 27, PHD finger protein 27	PHD FINGER PROTEIN 27		6	BGIOSGA021368 . B8B125 (indica).		Os06g0309000	LOC_Os06g20410.1				GO:0003682 - chromatin binding, GO:0046872 - metal ion binding		
23822	PHD31	OsPHD31	PHD FINGER PROTEIN 31	Plant homeo-domain finger protein 31, PHD finger protein 31	PHD FINGER PROTEIN 31		7	BGIOSGA023767 . A2YPL6 (indica).		Os07g0661500/Os07g0661550	LOC_Os07g46690.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus		
23823	PHD33	OsPHD33, OsAL7.1, AL7.1, OsAL7, AL7	PHD FINGER PROTEIN 33	Plant homeo-domain finger protein 33, PHD finger protein 33, Alfin-like 7.1, Alfin-like transcription factor 7	PHD FINGER PROTEIN 33	osal7.1	7	BGIOSGA024567. B8B8I3 (indica). Q8H383 (japonica). osa-miR5814 target gene. OsAL7 in Rahman et al. 2024. GO:0000976: transcription regulatory region sequence-specific DNA binding.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os07g0233300	LOC_Os07g12910.4, LOC_Os07g12910.2, LOC_Os07g12910.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0006325 - chromatin organization, GO:0003712 - transcription cofactor activity, GO:0050832 - defense response to fungus, GO:0010446 - response to alkalinity, GO:0042393 - histone binding, GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009408 - response to heat, GO:0030912 - response to deep water, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0009751 - response to salicylic acid stimulus, GO:0009845 - seed germination, GO:0046686 - response to cadmium ion, GO:0051607 - defense response to virus, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000148 - viral disease resistance, TO:0000481 - alkali sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0000391 - seed size, TO:0000181 - seed weight, TO:0000430 - germination rate, TO:0000095 - osmotic response sensitivity, TO:0000153 - relative yield, TO:0000396 - grain yield, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000173 - ethylene sensitivity, TO:0000203 - bacterial leaf streak disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009089 - endosperm , PO:0007057 - 0 seed germination stage , PO:0009010 - seed , PO:0009006 - shoot system 
23824	PHD35	OsPHD35, OsAL7.2, AL7.2, OsAL8, AL8	PHD FINGER PROTEIN 35	Plant homeo-domain finger protein 35, PHD finger protein 35, Alfin-like 7.2, Alfin-like transcription factor 8	PHD FINGER PROTEIN 35		7	BGIOSGA026108. B8B8C5 (indica). Q6YTY3 (japonica). osa-miR5814, osa-miR1875 target gene. OsAL8 in Rahman et al. 2024. GO:0000976: transcription regulatory region sequence-specific DNA binding. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0608400	LOC_Os07g41740.1				GO:0010446 - response to alkalinity, GO:0009735 - response to cytokinin stimulus, GO:0030912 - response to deep water, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006325 - chromatin organization, GO:0003712 - transcription cofactor activity, GO:0042393 - histone binding, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0050832 - defense response to fungus, GO:0051607 - defense response to virus, GO:0046872 - metal ion binding, GO:0009408 - response to heat, GO:0005634 - nucleus, GO:0006970 - response to osmotic stress, GO:0009733 - response to auxin stimulus, GO:0042742 - defense response to bacterium, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress	TO:0002657 - oxidative stress, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000203 - bacterial leaf streak disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity, TO:0000075 - light sensitivity, TO:0000524 - submergence tolerance, TO:0000481 - alkali sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000015 - oxygen sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000148 - viral disease resistance	PO:0005052 - plant callus , PO:0009009 - plant embryo , PO:0009005 - root , PO:0009006 - shoot system , PO:0009030 - carpel , PO:0009010 - seed , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0025034 - leaf 
23825	PHD40	OsPHD40, OsAL11, AL11, OsAL9, AL9	PHD FINGER PROTEIN 40	Plant homeo-domain finger protein 40, PHD finger protein 40, Alfin-like 11, Alfin-like transcription factor 9	PHD FINGER PROTEIN 40	osal11	11	BGIOSGA034217. B8BJV8 (indica). Q2R837 (japonica). osa-miR5075, osa-miR408-5p target gene. OsAL9 in Rahman et al. 2024. GO:0000976: transcription regulatory region sequence-specific DNA binding.PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Disease resistance	Os11g0244800	LOC_Os11g14010.2, LOC_Os11g14010.1				GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0009753 - response to jasmonic acid stimulus, GO:0046872 - metal ion binding, GO:0003712 - transcription cofactor activity, GO:0006325 - chromatin organization, GO:0006355 - regulation of transcription, DNA-dependent, GO:0050832 - defense response to fungus, GO:0042393 - histone binding, GO:0010446 - response to alkalinity, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0030912 - response to deep water, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0051607 - defense response to virus, GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009269 - response to desiccation, GO:0009408 - response to heat	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000481 - alkali sensitivity, TO:0000524 - submergence tolerance, TO:0000255 - sheath blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance, TO:0000166 - gibberellic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000396 - grain yield, TO:0000153 - relative yield, TO:0000391 - seed size, TO:0000181 - seed weight, TO:0000430 - germination rate	PO:0007057 - 0 seed germination stage , PO:0005052 - plant callus , PO:0009006 - shoot system , PO:0009005 - root , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009030 - carpel , PO:0009066 - anther , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009010 - seed 
23826	PHD41	OsPHD41	PHD FINGER PROTEIN 41	Plant homeo-domain finger protein 41, PHD finger protein 41	PHD FINGER PROTEIN 41		11	BGIOSGA034246. A2ZCW5 (indica).		Os11g0234200	LOC_Os11g12650.1				GO:0046872 - metal ion binding		
23827	PHD42	OsPHD42	PHD FINGER PROTEIN 42	Plant homeo-domain finger protein 42, PHD finger protein 42	PHD FINGER PROTEIN 42		11	BGIOSGA034498. B8BJ40 (indica).		Os11g0148700	LOC_Os11g05130.2, LOC_Os11g05130.1				GO:0046872 - metal ion binding		
23828	PHD43	OsPHD43, OsRING426, RING426	PHD FINGER PROTEIN 43	Plant homeo-domain finger protein 43, PHD finger protein 43, RING-type E3 ubiquitin ligase 426	PHD FINGER PROTEIN 43		12	BGIOSGA036080. B8BM84 (indica).	 Tolerance and resistance - Stress tolerance	Os12g0527800	LOC_Os12g34330.1				GO:0009651 - response to salt stress, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0003712 - transcription cofactor activity, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0000785 - chromatin	TO:0006001 - salt tolerance	
23829	PHD11	OsPHD11	PHD FINGER PROTEIN 11	Plant homeo-domain finger protein 11, PHD finger protein 11	PHD FINGER PROTEIN 11		3	BGIOSGA009559.									
23830	PHD13	OsPHD13	PHD FINGER PROTEIN 13	Plant homeo-domain finger protein 13, PHD finger protein 13	PHD FINGER PROTEIN 13		3	BGIOSGA011620. B8AL16 (indica).							GO:0046872 - metal ion binding		
23831	PHD39	OsPHD39	PHD FINGER PROTEIN 39	Plant homeo-domain finger protein 39, PHD finger protein 39	PHD FINGER PROTEIN 39		3	BGIOSGA030698. B8BF36 (indica).							GO:0004721 - phosphoprotein phosphatase activity, GO:0003682 - chromatin binding, GO:0000287 - magnesium ion binding, GO:0004743 - pyruvate kinase activity, GO:0030955 - potassium ion binding		
23832	D14L2	OsD14L2, D14L2a, OsD14L2a	D14-LIKE 2	D14-like 2, Dwarf14-like2a	D14-LIKE PROTEIN 2		5	a homolog of D14. GO:0080167: response to karrikin. TO:0000757: hypocotyl morphology trait. GO:0036377: arbuscular mycorrhizal association. GO:1901600: strigolactone metabolic process. GO:1902347: response to strigolactone	 Vegetative organ - Culm	Os05g0590300	LOC_Os05g51240.1				GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus	TO:0000401 - plant growth hormone sensitivity	PO:0000258 - root cortex , PO:0025164 - root epidermal cell 
23833	D14L3	OsD14L3, D14L2b, OsD14L2b	D14-LIKE 3	D14-like 3, Dwarf14-like2b	D14-LIKE PROTEIN 3		1	a homolog of D14. GO:0080167: response to karrikin. TO:0000757: hypocotyl morphology trait. D14L2b in Sisaphaithong et al. 2021. a close paralog of D14L2a. GO:0036377: arbuscular mycorrhizal association.	 Vegetative organ - Culm	Os01g0595600	LOC_Os01g41240.1				GO:0016787 - hydrolase activity, GO:0009610 - response to symbiotic fungus		
23834	KUF1	OsKUF1	KARRIKIN UPREGULATED F-BOX1		KARRIKIN UPREGULATED F-BOX PROTEIN 1		6	the rice homolog of the karrikin-inducible marker gene KARRIKIN UPREGULATED F-BOX1 (KUF1) in Arabidopsis. GO:1902347: response to strigolactone. GO:0080167: response to karrikin.		Os06g0711700	LOC_Os06g49750.1						
23835	_		_	Thionin	_		6	GO:1902347: response to strigolactone. GO:0080167: response to karrikin.			LOC_Os06g32355.1						
23837	CHZ1	OsChz1	Chaperone for H2A.Z-H2B 1	CHZ-domain protein 1	Chaperone for H2A.Z-H2B 1	oschz1, oschz1-1, oschz1-2		yeast Chz1 homolog. The RNA-seq, ChIP-seq, MNase-seq, and BS-seq data that support the findings of this study have been deposited to NCBI GEO with the accession number GSE155269. Structural factors and coordinates have been deposited in the Protein Data Bank (PDB) with accession code 6M2M for the OsChz1-H2A-H2B complex. GO:1902275: regulation of chromatin organization. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Reproductive organ - panicle	Os11g0544600	LOC_Os11g34190.1				GO:0048586 - regulation of long-day photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0048587 - regulation of short-day photoperiodism, flowering, GO:0006325 - chromatin organization, GO:0005634 - nucleus	TO:0000397 - grain size, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0000447 - filled grain number, TO:0002616 - flowering time, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0000357 - growth and development trait	PO:0001083 - inflorescence development stage 
23838	_	CM, OsCM	_	chorismate mutase			8	MH752192. GO:0080184: response to phenylpropanoid. GO:1901747: prephenate(2-) biosynthetic process. GO:0044550: secondary metabolite biosynthetic process. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0006047: calcium content trait.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Biochemical character	Os08g0441600	LOC_Os08g34290.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0048366 - leaf development, GO:0046417 - chorismate metabolic process, GO:0009607 - response to biotic stimulus, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0010116 - positive regulation of abscisic acid biosynthetic process, GO:0009073 - aromatic amino acid family biosynthetic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0009738 - abscisic acid mediated signaling, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation, GO:0002213 - defense response to insect, GO:0009411 - response to UV, GO:0004106 - chorismate mutase activity, GO:0005737 - cytoplasm, GO:0043200 - response to amino acid stimulus, GO:0042742 - defense response to bacterium	TO:0000731 - lignin content, TO:0000175 - bacterial blight disease resistance, TO:0000401 - plant growth hormone sensitivity, TO:0000476 - growth hormone content, TO:0002673 - amino acid content, TO:0002668 - jasmonic acid content, TO:0000609 - potassium content, TO:0000608 - sodium content, TO:0001016 - relative chlorophyll content, TO:0001030 - relative leaf area, TO:0000516 - relative root length, TO:0001034 - relative plant height, TO:0000605 - hydrogen peroxide content, TO:0000290 - flavonoid content, TO:0000465 - mineral and ion content related trait, TO:0000655 - leaf development trait, TO:0002667 - abscisic acid content, TO:0000136 - relative water content, TO:0000205 - white-backed planthopper resistance, TO:0000179 - biotic stress trait, TO:0000160 - UV light sensitivity, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress	PO:0001050 - leaf development stage 
23839	IMA2	OsIMA2	IRON MAN 2	IMA/FEP gene 2, IRON MAN/FE UPTAKE-INDUCING PEPTIDE 2			7	CT836140. GO:1990641: response to iron ion starvation. TO:0020089: iron content trait.	 Tolerance and resistance - Stress tolerance	Os07g0142100					GO:0042594 - response to starvation, GO:0010039 - response to iron ion	TO:0000224 - iron sensitivity	
23840	YPD1	OsYPD1	YELLOW AND PREMATURE DWARF 1	LRR-like1 protein, LRR-like1	LRR-LIKE1 PROTEIN	ypd1, ypd1-1, ypd1-2	6		 Reproductive organ - Panicle, Mode of branching,  Coloration,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle	Os06g0237502	LOC_Os06g13050.1				GO:0008219 - cell death, GO:0031969 - chloroplast membrane, GO:0010941 - regulation of cell death, GO:0009658 - chloroplast organization, GO:0005739 - mitochondrion, GO:0009507 - chloroplast, GO:0009642 - response to light intensity, GO:0010150 - leaf senescence	TO:0000460 - light intensity sensitivity, TO:0000249 - leaf senescence, TO:0000326 - leaf color, TO:0000557 - secondary branch number, TO:0000592 - 1000-dehulled grain weight, TO:0002759 - grain number, TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0002715 - chloroplast development trait, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000494 - pigment content, TO:0000547 - primary branch number, TO:0000605 - hydrogen peroxide content, TO:0000040 - panicle length, TO:0000346 - tiller number, TO:0000298 - chlorophyll ratio, TO:0000293 - chlorophyll-a content	PO:0025034 - leaf , PO:0001054 - 4 leaf senescence stage 
23841	AGP	OsAGP, OSIAGP, OSJAGP	ARABINOGALACTAN PROTEIN	arabinogalactan protein	ARABINOGALACTAN PROTEIN		6	CT836220. 	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility	Os06g0319133	LOC_Os06g21410.1				GO:0009642 - response to light intensity, GO:0009860 - pollen tube growth, GO:0009555 - pollen development	TO:0000460 - light intensity sensitivity	PO:0001007 - pollen development stage , PO:0009049 - inflorescence , PO:0009006 - shoot system , PO:0009005 - root , PO:0025281 - pollen 
23842	ATH1	OsATH1	AT-HOOK PROTEIN 1	AT-hook protein 1	AT-HOOK PROTEIN 1	osath1, osath1-ko	7		 Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date	Os07g0184800	LOC_Os07g08710.2, LOC_Os07g08710.1				GO:0006334 - nucleosome assembly, GO:0031936 - negative regulation of chromatin silencing, GO:0030261 - chromosome condensation, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0005634 - nucleus, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048573 - photoperiodism, flowering, GO:0043966 - histone H3 acetylation, GO:0042742 - defense response to bacterium, GO:0031492 - nucleosomal DNA binding, GO:0003690 - double-stranded DNA binding, GO:0016584 - nucleosome positioning, GO:0045910 - negative regulation of DNA recombination	TO:0000605 - hydrogen peroxide content, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000175 - bacterial blight disease resistance	
23843	CAND1	OsCAND1	CULLIN-ASSOCIATED AND NEDDYLATION-DISSOCIATED 1	Cullin-associated and neddylation-dissociated 1	CULLIN-ASSOCIATED AND NEDDYLATION-DISSOCIATED 1	Oscand1	2	a rice homolog of Arabidopsis CAND1. GO:1902749: regulation of cell cycle G2/M phase transition.	 Vegetative organ - Root	Os02g0167700	LOC_Os02g07120.1				GO:0009734 - auxin mediated signaling pathway, GO:0010265 - SCF complex assembly, GO:0005634 - nucleus, GO:0016567 - protein ubiquitination, GO:0048364 - root development		PO:0007518 - crown root emergence stage , PO:0007504 - crown root primordium formation stage , PO:0020123 - root cap 
23844	CS1	OsCS1	CITRATE SYNTHASE 1	citrate synthase 1	CITRATE SYNTHASE 1		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0194100	LOC_Os02g10070.2, LOC_Os02g10070.1				GO:0006101 - citrate metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0010044 - response to aluminum ion, GO:0005759 - mitochondrial matrix, GO:0006099 - tricarboxylic acid cycle, GO:0004108 - citrate (Si)-synthase activity	TO:0000354 - aluminum sensitivity	
23845	ERA1	OsERA1, OsERA1.1, OsERA1.2, OsABA1, ABA1, OsPFT-beta, PFT-beta	ENHANCED RESPONSE TO ABA1 	protein farnesyl-transferase beta subunit	PROTEIN FARNESYL-TRANSFERASE BETA	osera1	3	TO:0020095: stomatal process related trait. GO:0090332: stomatal closure.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Vegetative organ - Leaf	Os01g0737800	LOC_Os01g53600.2, LOC_Os01g53600.1				GO:0018343 - protein farnesylation, GO:0005965 - protein farnesyltransferase complex, GO:0018342 - protein prenylation, GO:0008270 - zinc ion binding, GO:0004660 - protein farnesyltransferase activity, GO:0009414 - response to water deprivation, GO:0080022 - primary root development, GO:0010119 - regulation of stomatal movement, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000522 - stomatal conductance	PO:0025034 - leaf 
23846	FLO18	OsFLO18	FLOURY ENDOSPERM 18	floury endosperm 18		flo18	7	a pentatricopeptide repeat protein. GO:0090617: mitochondrial mRNA 5'-end processing. GO:0061458: reproductive system development. GO:0080186: developmental vegetative growth.	 Seed - Morphological traits - Endosperm	Os07g0688100	LOC_Os07g48850.2, LOC_Os07g48850.1				GO:0005739 - mitochondrion, GO:0032981 - mitochondrial respiratory chain complex I assembly, GO:0006397 - mRNA processing, GO:0009960 - endosperm development, GO:0005774 - vacuolar membrane, GO:0000966 - RNA 5'-end processing		PO:0007633 - endosperm development stage 
23847	DGP1	OsDGP1	DEEP GREEN PANICLE 1	DEEP GREEN PANICLE1		dgp1	1	GO:1902882: regulation of response to oxidative stress. GO:1902168: response to catechin.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os01g0837600	LOC_Os01g62060.3, LOC_Os01g62060.2, LOC_Os01g62060.1				GO:0010109 - regulation of photosynthesis, GO:0009765 - photosynthesis, light harvesting, GO:0009773 - photosynthetic electron transport in photosystem I, GO:0006979 - response to oxidative stress, GO:0006741 - NADP biosynthetic process, GO:0043456 - regulation of pentose-phosphate shunt, GO:0010906 - regulation of glucose metabolic process, GO:0009767 - photosynthetic electron transport chain, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0032928 - regulation of superoxide release, GO:0006110 - regulation of glycolysis, GO:0015995 - chlorophyll biosynthetic process, GO:0009772 - photosynthetic electron transport in photosystem II, GO:0009416 - response to light stimulus	TO:0000102 - phosphorus sensitivity, TO:0000075 - light sensitivity, TO:0000495 - chlorophyll content, TO:0002657 - oxidative stress, TO:0000221 - glume color, TO:0000326 - leaf color	PO:0009039 - glume 
23848	DNL4	DNL-4, OsDNL-4, OsDNL4	DWARF AND NARROW LEAF 4	dwarf and narrow leaf 4		dnl-4	1	a pfkB carbohydrate kinase protein. TO:0000975: grain width.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os01g0105900	LOC_Os01g01620.1				GO:0016301 - kinase activity	TO:0000040 - panicle length, TO:0000206 - leaf angle, TO:0000370 - leaf width, TO:0000207 - plant height	
23849	CYP71Z21 	OsCYP71Z21	CYTOCHROME P450 71Z21	cytochrome P450 71Z21	CYTOCHROME P450 71Z21		7	a casbene C10 oxidase.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0218700	LOC_Os07g11870.1				GO:0009753 - response to jasmonic acid stimulus, GO:0002238 - response to molecule of fungal origin, GO:0016102 - diterpenoid biosynthetic process, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009751 - response to salicylic acid stimulus, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0050832 - defense response to fungus, GO:0009411 - response to UV, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0000074 - blast disease, TO:0002669 - diterpenoid phytoalexin content, TO:0000172 - jasmonic acid sensitivity, TO:0000160 - UV light sensitivity	
23850	TTLL12	OsTTLL12	TUBULIN TYROSINE LIGASE-LIKE 12	tubulin tyrosine ligase-like 12 protein	TUBULIN TYROSINE LIGASE-LIKE 12 PROTEIN		3	GO:0080175: phragmoplast microtubule organization.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os03g0179000	LOC_Os03g08140.2, LOC_Os03g08140.1				GO:0005524 - ATP binding, GO:0007017 - microtubule-based process, GO:0048364 - root development, GO:0009826 - unidimensional cell growth, GO:0009635 - response to herbicide, GO:0000226 - microtubule cytoskeleton organization, GO:0000919 - cell plate formation, GO:0006464 - protein modification process, GO:0016874 - ligase activity	TO:0000656 - root development trait, TO:0000567 - tiller angle, TO:0000058 - herbicide sensitivity, TO:0001007 - coleoptile length, TO:0000357 - growth and development trait, TO:0000207 - plant height	PO:0007520 - root development stage 
23851	RLR1	OsRLR1	RPM1-LIKE RESISTANCE GENE 1	RPM1-like resistance gene 1		rlr1	10		 Vegetative organ - Culm,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance	Os10g0163040	LOC_Os10g07978.2, LOC_Os10g07978.1				GO:0031349 - positive regulation of defense response, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0009626 - plant-type hypersensitive response, GO:0006952 - defense response, GO:0005524 - ATP binding, GO:0043531 - ADP binding	TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000605 - hydrogen peroxide content, TO:0000175 - bacterial blight disease resistance, TO:0000112 - disease resistance, TO:0000074 - blast disease, TO:0000357 - growth and development trait, TO:0002759 - grain number, TO:0000346 - tiller number	
23852	NBL1	OsNBL1	NATURE BLIGHT LEAF 1	Nature Blight Leaf 1		nbl1	10	GO:1903409: reactive oxygen species biosynthetic process.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0478900	LOC_Os10g33855.2, LOC_Os10g33855.1				GO:0009646 - response to absence of light, GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0010150 - leaf senescence, GO:0016021 - integral to membrane, GO:0012505 - endomembrane system, GO:0046907 - intracellular transport, GO:0043067 - regulation of programmed cell death, GO:0009751 - response to salicylic acid stimulus	TO:0000455 - seed set percent, TO:0000346 - tiller number, TO:0002730 - grain shape, TO:0000634 - node number, TO:0000145 - internode length, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000249 - leaf senescence, TO:0000605 - hydrogen peroxide content, TO:0000590 - grain weight	PO:0001054 - 4 leaf senescence stage 
23853	RPM1	OsRPM1	_				1	a rice homolog of Arabidopsis PM-associated protein RPM1.	 Tolerance and resistance - Disease resistance	Os01g0547000	LOC_Os01g36640.1				GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0043531 - ADP binding		
23854	RPP13	OsRPP13	_				10	a rice homolog of Arabidopsis PM-associated protein RPM1.		Os10g0507000	LOC_Os10g36270.1				GO:0043531 - ADP binding, GO:0005524 - ATP binding		
23855	RPS2	OsRPS2	_				9	The homolog of Arabidopsis gene RPS2. GO:0097602: cullin family protein binding. 		Os09g0272900	LOC_Os09g10054.1				GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0043531 - ADP binding, GO:0016567 - protein ubiquitination		
23856	RPP8	OsRPP8	_				11	The homolog of Arabidopsis gene RPP8.	 Tolerance and resistance - Disease resistance	Os11g0633500	LOC_Os11g41540.1				GO:0006952 - defense response, GO:0005524 - ATP binding, GO:0043531 - ADP binding		
23857	CDASE	OsCDase	CERAMIDASE	ceramidase	CERAMIDASE		1	Q0JL46. GO:0102121: ceramidase activity.	 Biochemical character	Os01g0624000	LOC_Os01g43520.1				GO:0046514 - ceramide catabolic process, GO:0017040 - ceramidase activity, GO:0042759 - long-chain fatty acid biosynthetic process, GO:0046512 - sphingosine biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus		
23858	DVB1	OsDVB1	DECREASED VASCULAR BUNDLE 1	Decreased Vascular Bundle 1		dvb1	3	a structural protein classified in the Mic10 family. GO:0061617: MICOS complex. TO:0000740: branch morphology trait. TO:0000847: panicle inflorescence morphology trait. TO:0000756: stem internode morphology trait. TO:1000022: anther morphology trait. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility,  Vegetative organ - Leaf	Os03g0840900	LOC_Os03g62420.1				GO:0010600 - regulation of auxin biosynthetic process, GO:0006520 - cellular amino acid metabolic process, GO:0042407 - cristae formation, GO:0007005 - mitochondrion organization, GO:0005739 - mitochondrion	TO:0000370 - leaf width, TO:0000218 - pollen abortion type, TO:0000145 - internode length, TO:0000040 - panicle length, TO:0000227 - root length, TO:0002672 - auxin content, TO:0000420 - fertility related trait, TO:0000472 - vascular bundle number, TO:0000207 - plant height, TO:0000357 - growth and development trait	PO:0005020 - vascular bundle , PO:0009051 - spikelet , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009005 - root 
23859	HARP	OsHARP	HISTIDINE- AND ALANINE-RICH PROTEIN	histidine- and alanine-rich protein	HISTIDINE- AND ALANINE-RICH PROTEIN		2			Os02g0256200	LOC_Os02g15700.1				GO:0009739 - response to gibberellin stimulus	TO:0000207 - plant height, TO:0000166 - gibberellic acid sensitivity, TO:0002689 - leaf sheath length	PO:0020104 - leaf sheath 
23860	_	OsFPS3, FPS3	_	farnesyl diphosphate synthase 3, farnesyl-PP synthase 3, FPP synthase 3			1		 Biochemical character	Os01g0695300	LOC_Os01g50050.2, LOC_Os01g50050.1				GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0008299 - isoprenoid biosynthetic process, GO:0045337 - farnesyl diphosphate biosynthetic process, GO:0005829 - cytosol, GO:0009753 - response to jasmonic acid stimulus, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups, GO:0009739 - response to gibberellin stimulus, GO:0004161 - dimethylallyltranstransferase activity, GO:0004337 - geranyltranstransferase activity	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
23861	FPPS4	OsFPPS4, OsFPS4, FPS4	FARNESYL-PP SYNTHASE 4	farnesyl diphosphate synthase 4, farnesyl-PP synthase 4, FPP synthase 4	FARNESYL-PP SYNTHASE 4		4	CT835061.	 Biochemical character	Os04g0657300	LOC_Os04g56230.1				GO:0008299 - isoprenoid biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups, GO:0009737 - response to abscisic acid stimulus, GO:0005829 - cytosol, GO:0009739 - response to gibberellin stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	
23862	GPPS	OsGPS, GPS, OsGPPS	GERANYL-PP SYNTHASE	geranyl-PP synthase, GPP synthase	GERANYL-PP SYNTHASE		1		 Biochemical character	Os01g0248701	LOC_Os01g14630.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009570 - chloroplast stroma, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0008299 - isoprenoid biosynthetic process, GO:0004659 - prenyltransferase activity, GO:0010287 - plastoglobule	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	
23863	SPS4	OsSPS4	SOLANESYL-PP SYNTHASE 4	solanesyl diphosphate synthase 4, solanesyl-PP synthase 4, SPP synthase 4	SOLANESYL-PP SYNTHASE 4		8	GO:1990234: transferase complex.	 Biochemical character	Os08g0193100	LOC_Os08g09370.1				GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0004659 - prenyltransferase activity, GO:0009739 - response to gibberellin stimulus, GO:0006744 - ubiquinone biosynthetic process, GO:0008299 - isoprenoid biosynthetic process, GO:0009753 - response to jasmonic acid stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
23864	CYP89G1	OsCYP89G1	P-450 89G1	Cytochrome P450 89G1	P-450 89G1		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0451300	LOC_Os07g26870.1				GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
23865	PLM11	OsPLM11, qLPA8.1	PUSA LPA MUTANT 11	Pusa LPA Mutant 11, Pusa Low Phytic Acid Content  Mutant 11			8	a protein similar to a phosphatidylinositol 3- and 4-kinase family member.		Os08g0274775						TO:0000291 - carbohydrate content	
23866	_	OsEPF1, EPF1	_	Epidermal patterning factor 1			4			Os04g0457700	LOC_Os04g38470.1				GO:0005576 - extracellular region, GO:0010052 - guard cell differentiation		
23867	MIR818B	OsmiR818b, miR818b, osa-miR818b, osa-MIR818b	MICRORNA818B	microRNA818b, osa-miRNA818b			5		 Other,  Tolerance and resistance - Stress tolerance						GO:0009414 - response to water deprivation, GO:0016442 - RNA-induced silencing complex, GO:0035195 - gene silencing by miRNA, GO:0035068 - micro-ribonucleoprotein complex, GO:0006379 - mRNA cleavage	TO:0000276 - drought tolerance	
23868	_		BERBERINE BRIDGE ENZYME-LIKE 13	berberine bridge enzyme-like 13, BBE-like enzyme 13	BERBERINE BRIDGE ENZYME-LIKE 13		6	GO:0071949: FAD binding.	 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0548200	LOC_Os06g35560.1				GO:0016491 - oxidoreductase activity, GO:0034059 - response to anoxia, GO:0009845 - seed germination		PO:0007057 - 0 seed germination stage 
23869	_		_	plasma membrane (PM) H+-ATPase			1		 Tolerance and resistance - Stress tolerance	Os01g0966000	LOC_Os01g73514.1				GO:0006749 - glutathione metabolic process, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0009506 - plasmodesma, GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity, GO:0006751 - glutathione catabolic process	TO:0006001 - salt tolerance	
23870	_	SNAT	_	serotonin N-acetyltransferase			5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0516300	LOC_Os05g44020.4, LOC_Os05g44020.3, LOC_Os05g44020.2, LOC_Os05g44020.1				GO:0008080 - N-acetyltransferase activity, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0030186 - melatonin metabolic process, GO:0007623 - circadian rhythm, GO:0005793 - ER-Golgi intermediate compartment, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0006048 - UDP-N-acetylglucosamine biosynthetic process, GO:0048029 - monosaccharide binding, GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
23871	ASMT9	ASMT, OsASMT9, OsCOMT14, COMT14	ACETYL-SEROTONIN METHYLTRANSFERASE 9	N-acetylserotonin O-methyltransferase, acetyl-serotonin methyltransferase 9, Caffeic Acid O-Methyltransferase 14	ACETYL-SEROTONIN METHYLTRANSFERASE 9		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0464200	LOC_Os07g28040.2, LOC_Os07g28040.1				GO:0019438 - aromatic compound biosynthetic process, GO:0032259 - methylation, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008171 - O-methyltransferase activity, GO:0009408 - response to heat, GO:0030186 - melatonin metabolic process, GO:0009607 - response to biotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009735 - response to cytokinin stimulus, GO:0007623 - circadian rhythm	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000179 - biotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009047 - stem , PO:0007041 - inflorescence emergence stage , PO:0009006 - shoot system 
23872	_	OsRING443, RING443	_	RING-type E3 ubiquitin ligase 443			2	Protein binding protein, putative, expressed	 Tolerance and resistance - Stress tolerance	Os02g0580800	LOC_Os02g37030.1				GO:0009651 - response to salt stress, GO:0030014 - CCR4-NOT complex, GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity	TO:0020004 - shoot sodium content, TO:0006001 - salt tolerance	
23873	CPN1	OsCPN1	CYTOKININ/PURINE RIBOSIDE NUCLEOSIDASE 1	cytokinin/purine riboside nucleosidase 1	CYTOKININ/PURINE RIBOSIDE NUCLEOSIDASE 1		5	Inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed	 Tolerance and resistance - Stress tolerance	Os05g0406100	LOC_Os05g33630.5, LOC_Os05g33630.4, LOC_Os05g33630.3, LOC_Os05g33630.2, LOC_Os05g33630.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0020004 - shoot sodium content	
23874	_		_				1	TO:0000847: panicle inflorescence morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle,  Biochemical character,  Character as QTL - Yield and productivity	Os01g0140100	LOC_Os01g04710.1				GO:0004190 - aspartic-type endopeptidase activity	TO:0000456 - spikelet number	PO:0009030 - carpel , PO:0009049 - inflorescence 
23875	RIP11.2	OsjRIP11.2, nuRIP, OsnuRIP	RIBOSOME-INACTIVATING PROTEIN 11.2	Ribosome-inactivating protein 11.2	RIBOSOME-INACTIVATING PROTEIN 11.2		11		 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Vegetative organ - Root	Os11g0164000	LOC_Os11g06460.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0006970 - response to osmotic stress	TO:0000576 - stem length, TO:0000207 - plant height, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000457 - total biomass yield, TO:0000227 - root length	
23876	TSPO	OsTSPO	TRANSLOCATOR PROTEIN	translocator protein	TRANSLOCATOR PROTEIN		5		 Tolerance and resistance - Stress tolerance	Os05g0151200	LOC_Os05g05930.1				GO:0042542 - response to hydrogen peroxide, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
23877	_	OsPIPK, PIPK	_	phosphatidylinositol-4-phosphate 5 kinase			4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0691900	LOC_Os04g59540.1				GO:0016887 - ATPase activity, GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0046854 - phosphoinositide phosphorylation, GO:0010008 - endosome membrane	TO:0006001 - salt tolerance	
23878	HIPP1	OsHIPP1, OsaHIP01, HIP01	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 1	heavy-metal-associated isoprenylated plant protein 1	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 1		4			Os04g0400000	LOC_Os04g32800.1						
23879	CRP1	OsCRP1, cpRNP1, OsCP31A, CP31A	CHLOROPLAST RNA-BINDING PROTEIN 1		CHLOROPLAST RNA-BINDING PROTEIN 1		9	GO:1901259: chloroplast rRNA processing. TO:0006060: leaf chlorosis. GO:2001169: regulation of ATP biosynthetic process. RNA seq: PRJNA631899.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Tolerance and resistance - Stress tolerance	Os09g0565200	LOC_Os09g39180.1				GO:0009414 - response to water deprivation, GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, GO:0010109 - regulation of photosynthesis, GO:0006754 - ATP biosynthetic process, GO:0009642 - response to light intensity, GO:0009409 - response to cold, GO:0043488 - regulation of mRNA stability, GO:0009570 - chloroplast stroma, GO:0003723 - RNA binding, GO:0009535 - chloroplast thylakoid membrane, GO:0003729 - mRNA binding	TO:0000276 - drought tolerance, TO:0000460 - light intensity sensitivity, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000303 - cold tolerance	PO:0009046 - flower , PO:0025034 - leaf 
23880	CRP2	OsCRP2, cpRNP2	CHLOROPLAST RNA-BINDING PROTEIN 2		CHLOROPLAST RNA-BINDING PROTEIN 2		8	GO:1901259: chloroplast rRNA processing.		Os08g0557100	LOC_Os08g44290.1				GO:0003723 - RNA binding, GO:0003729 - mRNA binding, GO:0009535 - chloroplast thylakoid membrane		
23881	CRP3	OsCRP3, cpRNP3	CHLOROPLAST RNA-BINDING PROTEIN 3		CHLOROPLAST RNA-BINDING PROTEIN 3		7			Os07g0158300	LOC_Os07g06450.1				GO:0009570 - chloroplast stroma, GO:0003729 - mRNA binding, GO:0009535 - chloroplast thylakoid membrane, GO:0003723 - RNA binding		
23882	CRP4	OsCRP4, cpRNP4, OsRRM2, RRM2	CHLOROPLAST RNA-BINDING PROTEIN 4	RNA recognition motif 2, RNA recognition motif protein 2	CHLOROPLAST RNA-BINDING PROTEIN 4		3	GO:1901259: chloroplast rRNA processing.	 Tolerance and resistance - Disease resistance	Os03g0376600	LOC_Os03g25960.1				GO:0050832 - defense response to fungus, GO:0009535 - chloroplast thylakoid membrane, GO:0003723 - RNA binding, GO:0003729 - mRNA binding, GO:0009507 - chloroplast, GO:0031982 - vesicle	TO:0000074 - blast disease	
23883	CRP5	OsCRP5, cpRNP5	CHLOROPLAST RNA-BINDING PROTEIN 5		CHLOROPLAST RNA-BINDING PROTEIN 5		7	GO:1901259: chloroplast rRNA processing.		Os07g0631900	LOC_Os07g43810.1				GO:0003723 - RNA binding, GO:0003729 - mRNA binding, GO:0009535 - chloroplast thylakoid membrane		
23884	CRP6	OsCRP6, cpRNP6	CHLOROPLAST RNA-BINDING PROTEIN 6		CHLOROPLAST RNA-BINDING PROTEIN 6		2	GO:1901259: chloroplast rRNA processing.		Os02g0815200	LOC_Os02g57010.1				GO:0003723 - RNA binding, GO:0009535 - chloroplast thylakoid membrane, GO:0003729 - mRNA binding		
23885	CRP7	OsCRP7, cpRNP7	CHLOROPLAST RNA-BINDING PROTEIN 7		CHLOROPLAST RNA-BINDING PROTEIN 7		9	GO:1901259: chloroplast rRNA processing. GO:1901001: negative regulation of response to salt stress. GO:0080148: negative regulation of response to water deprivation.		Os09g0279500	LOC_Os09g10760.1				GO:0010029 - regulation of seed germination, GO:0003729 - mRNA binding, GO:0009535 - chloroplast thylakoid membrane, GO:0003723 - RNA binding, GO:0003697 - single-stranded DNA binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009941 - chloroplast envelope, GO:0009570 - chloroplast stroma, GO:0005840 - ribosome		
23886	CRP8	OsCRP8, cpRNP8	CHLOROPLAST RNA-BINDING PROTEIN 8		CHLOROPLAST RNA-BINDING PROTEIN 8		9	GO:1990904: ribonucleoprotein complex.		Os08g0117100	LOC_Os08g02390.1				GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0009507 - chloroplast		
23887	HIPP2	OsHIPP2, OsaHIP02, HIP02	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 2	heavy-metal-associated isoprenylated plant protein 2	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 2		4				LOC_Os04g32810.1						
23888	HIPP3	OsHIPP3, OsaHIP03, HIP03	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3	heavy-metal-associated isoprenylated plant protein 3	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3		4	CT841782 (Oryza rufipogon).		Os04g0400600	LOC_Os04g32820.1						
23889	HIPP4	OsHIPP4, OsaHIP04, HIP04	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 4	heavy-metal-associated isoprenylated plant protein 4	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 4		4	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os04g0400800	LOC_Os04g32840.1				GO:0050832 - defense response to fungus		
23890	HIPP6	OsHIPP6, OsaHIP06, HIP06	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6	heavy-metal-associated isoprenylated plant protein 6	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6		3	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os03g0412300	LOC_Os03g29920.2, LOC_Os03g29920.1				GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus		
23891	HIPP7	OsHIPP7, OsaHIP07, HIP07	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	heavy-metal-associated isoprenylated plant protein 7	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7		7			Os07g0606900	LOC_Os07g41600.3, LOC_Os07g41600.2, LOC_Os07g41600.1						
23892	HIPP8	OsHIPP8, OsaHIP08, HIP08	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 8	heavy-metal-associated isoprenylated plant protein 8	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 8		3	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os03g0751600	LOC_Os03g54050.2, LOC_Os03g54050.1				GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding		
23893	HIPP9	OsHIPP9, OsaHIP09, HIP09	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9	heavy-metal-associated isoprenylated plant protein 9	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9		7	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0682000	LOC_Os07g48390.1				GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
23894	HIPP10	OsHIPP10, OsaHIP10, HIP10	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 10	heavy-metal-associated isoprenylated plant protein 10	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 10		10	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os10g0207700	LOC_Os10g14050.1				GO:0050832 - defense response to fungus		PO:0025082 - reproductive shoot system , PO:0009049 - inflorescence 
23895	HIPP11	OsHIPP11, OsaHIP11, HIP11	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 11	heavy-metal-associated isoprenylated plant protein 11	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 11		11	LOC_Os11g41120 (The locus or model name was not found in MSU Rice Genome Annotation Project Release 7 data) in de Abreu-Neto et al. 2013 .	 Tolerance and resistance - Stress tolerance	Os11g0629100					GO:0046872 - metal ion binding		
23896	HIPP12	OsHIPP12, OsaHIP12, HIP12	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 12	heavy-metal-associated isoprenylated plant protein 12	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 12		4			Os04g0467950	LOC_Os04g39290.1						
23897	HIPP13	OsHIPP13, OsaHIP13, HIP13	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 13	heavy-metal-associated isoprenylated plant protein 13	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 13		2			Os02g0582600	LOC_Os02g37160.1						PO:0009005 - root 
23898	HIPP14	OsHIPP14, OsaHIP14, HIP14	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 14	heavy-metal-associated isoprenylated plant protein 14	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 14		4		 Tolerance and resistance - Stress tolerance	Os04g0468600	LOC_Os04g39320.4, LOC_Os04g39320.2, LOC_Os04g39320.1				GO:0046686 - response to cadmium ion		
23899	HIPP15	OsHIPP15, OsaHIP15, HIP15	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 15	heavy-metal-associated isoprenylated plant protein 15	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 15		4		 Tolerance and resistance - Stress tolerance	Os04g0468000	LOC_Os04g39300.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
23900	HIPP16	OsHIPP16, OsaHIP16, HIP16	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 16	heavy-metal-associated isoprenylated plant protein 16	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 16		2		 Tolerance and resistance - Stress tolerance	Os02g0585200	LOC_Os02g37330.1						
23901	HIPP17	OsHIPP17, OsaHIP17, HIP17	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 17	heavy-metal-associated isoprenylated plant protein 17	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 17	Oshipp17	9	TO:0020092: copper content trait. TO:0006052: copper concentration. TO:1000033: root system copper content. TO:1000059: shoot system copper content.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Vegetative organ - Culm	Os09g0272000	LOC_Os09g09930.1				GO:0046688 - response to copper ion, GO:0005634 - nucleus, GO:0048364 - root development, GO:0009736 - cytokinin mediated signaling	TO:0000516 - relative root length, TO:0000207 - plant height, TO:0000656 - root development trait, TO:0000465 - mineral and ion content related trait, TO:0001034 - relative plant height, TO:0000227 - root length, TO:0000021 - copper sensitivity	
23902	HIPP18	OsHIPP18, OsaHIP18, HIP18	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 18	heavy-metal-associated isoprenylated plant protein 18	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 18		4		 Tolerance and resistance - Stress tolerance		LOC_Os04g39360.1				GO:0046686 - response to cadmium ion		
23903	HIPP19	OsHIPP19, OsaHIP19, HIP19	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 19	heavy-metal-associated isoprenylated plant protein 19, HMA isoprenylated plant protein 19	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 19		4		 Tolerance and resistance - Disease resistance	Os04g0469000	LOC_Os04g39350.1				GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23904	HIPP20	OsHIPP20, OsaHIP20, HIP20	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 20	heavy-metal-associated isoprenylated plant protein 20	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 20		4		 Tolerance and resistance - Disease resistance	Os04g0464100	LOC_Os04g39010.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23905	HIPP21	OsHIPP21, OsaHIP21, HIP21	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 21	heavy-metal-associated isoprenylated plant protein 21	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 21		9		 Tolerance and resistance - Stress tolerance	Os09g0271100	LOC_Os09g09830.2, LOC_Os09g09830.1				GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0005829 - cytosol, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf 
23906	HIPP23	OsHIPP23, OsaHIP23, HIP23	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 23	heavy-metal-associated isoprenylated plant protein 23	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 23		1		 Tolerance and resistance - Stress tolerance	Os01g0249700	LOC_Os01g14700.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0046872 - metal ion binding, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
23907	HIPP24	OsHIPP24, OsaHIP24, HIP24	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 24	heavy-metal-associated isoprenylated plant protein 24	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 24		4			Os04g0667600	LOC_Os04g57200.2, LOC_Os04g57200.1						
23908	HIPP25	OsHIPP25, OsaHIP25, HIP25	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 25	heavy-metal-associated isoprenylated plant protein 25	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 25		10			Os10g0532300	LOC_Os10g38870.1				GO:0046872 - metal ion binding		
23909	HIPP26	OsHIPP26, OsaHIP26, HIP26	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26	heavy-metal-associated isoprenylated plant protein 26	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26		12			Os12g0421000	LOC_Os12g23280.4, LOC_Os12g23280.3, LOC_Os12g23280.2, LOC_Os12g23280.1				GO:0046872 - metal ion binding		
23910	HIPP37	OsHIPP37, OsaHIP37, HIP37	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 37	heavy-metal-associated isoprenylated plant protein 37	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 37		10			Os10g0440300	LOC_Os10g30430.1				GO:0046872 - metal ion binding		
23911	HIPP44	OsHIPP44, OsaHIP44, HIP44	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 44	heavy-metal-associated isoprenylated plant protein 44	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 44		9		 Tolerance and resistance - Stress tolerance	Os09g0364800	LOC_Os09g20000.1				GO:0046686 - response to cadmium ion		
23912	HIPP49	OsHIPP49, OsaHIP49, HIP49	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 49	heavy-metal-associated isoprenylated plant protein 49	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 49		1	a cis target of lncRNA Os01t0678900-01.		Os01g0678800	LOC_Os01g48710.1				GO:0046872 - metal ion binding		
23913	HIPP53	OsHIPP53, OsaHIP53, HIP53	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 53	heavy-metal-associated isoprenylated plant protein 53	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 53		3			Os03g0345700	LOC_Os03g22490.4, LOC_Os03g22490.3, LOC_Os03g22490.2, LOC_Os03g22490.1				GO:0046872 - metal ion binding		
23914	HIPP55	OsHIPP55, OsaHIP55, HIP55	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 55	heavy-metal-associated isoprenylated plant protein 55	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 55		5			Os05g0150733	LOC_Os05g05820.1						
23915	HIPP58	OsHIPP58, OsaHIP58, HIP58	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 58	heavy-metal-associated isoprenylated plant protein 58	HEAVY-METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 58		4			Os04g0615600	LOC_Os04g52530.1						
23916	HPP2	OsHPP2, OsaHPP02, HPP02	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 2	heavy-metal-associated plant protein 2	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 2		2			Os02g0584600	LOC_Os02g37280.1						
23917	HPP3	OsHPP3, OsaHPP03, HPP03	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 3	heavy-metal-associated plant protein 3	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 3		2		 Tolerance and resistance - Disease resistance	Os02g0584700	LOC_Os02g37290.1				GO:0050832 - defense response to fungus, GO:0046872 - metal ion binding	TO:0000074 - blast disease	
23918	HPP6	OsHPP6, OsaHPP06, HPP06	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 6	heavy-metal-associated plant protein 6	HEAVY-METAL-ASSOCIATED PLANT PROTEIN 6		4			Os04g0581800	LOC_Os04g49260.1				GO:0046872 - metal ion binding		
23919	S22A_J1	S22(t), S22A_j1	F1 POLLEN SEMI-STERILITY 22A_j1	F1 pollen semi-sterility 22A_j1		S22A_j1, S22A-glums	2	Pollen semi-sterility found in the hybrid between O. glumaepatula and O. sativa. S22A-glums (O. glumaepatula allele).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os02g0107600	LOC_Os02g01790.2, LOC_Os02g01790.1					TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	
23920	S22A_J2	S22(t), S22A_j2	F1 POLLEN SEMI-STERILITY 22A_j2	F1 pollen semi-sterility 22A_j2		S22A_j2, S22A-glums	2	Pollen semi-sterility found in the hybrid between O. glumaepatula and O. sativa. S22A-glums (O. glumaepatula allele).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os02g0108400	LOC_Os02g01870.1					TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	
23921	S22A_J3	S22(t), S22A_j3	F1 POLLEN SEMI-STERILITY 22A_j3	F1 pollen semi-sterility 22A_j3		S22A_j3, S22A-glums	2	Pollen semi-sterility found in the hybrid between O. glumaepatula and O. sativa. S22A-glums (O. glumaepatula allele).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os02g0108900	LOC_Os02g01900.1					TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	
23922	S22B	S22(t), S22B	F1 POLLEN SEMI-STERILITY 22B	F1 pollen semi-sterility 22B		S22B-T65, S22B_j, S22B-g, S22B-glums, S22B_m	2	Pollen semi-sterility found in the hybrid between O. glumaepatula and O. sativa. O. glumaepatula allele S22B-g, O. meridionalis allele S22B-m. LC596092 (O. sativa), LC596094 (O. glumipatula), LC596093 (Oryza meridionalis). The S22(t) region was found to be composed of two loci, designated S22A and S22B, that independently induce F1 pollen sterility (Sakata et al 2014). S22B was mapped between RM7033 and RM279, with a distance of 0.49 cM from each of the two markers (Sakata et al 2014). S53(t), caused pollen sterility in an O. sativa-O. meridionalis hybrid, was identified on the same chromosome region harboring S22B (Li et al. 2020).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os02g0136800	LOC_Os02g04420.3, LOC_Os02g04420.2, LOC_Os02g04420.1					TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000218 - pollen abortion type	
23923	MBD703	OsMBD703	METHYL-CPG-BINDING PROTEIN 703	methyl-CpG-binding protein 703	METHYL-CPG-BINDING PROTEIN 703		6	CB097036 (indica).		Os06g0702100	LOC_Os06g48870.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		PO:0005052 - plant callus 
23924	MBD704	OsMBD704	METHYL-CPG-BINDING PROTEIN 704	methyl-CpG-binding protein 704	METHYL-CPG-BINDING PROTEIN 704		4	CA759629 (indica).		Os04g0273900	LOC_Os04g20560.2, LOC_Os04g20560.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		PO:0009010 - seed 
23925	MBD705	OsMBD705	METHYL-CPG-BINDING PROTEIN 705	methyl-CpG-binding protein 705	METHYL-CPG-BINDING PROTEIN 705		4			Os04g0266400	LOC_Os04g19684.1, LOC_Os04g19684.2, LOC_Os04g19684.3				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009051 - spikelet , PO:0020122 - inflorescence axis , PO:0009010 - seed , PO:0025034 - leaf , PO:0009005 - root 
23926	MBD706	OsMBD706	METHYL-CPG-BINDING PROTEIN 706	methyl-CpG-binding protein 706	METHYL-CPG-BINDING PROTEIN 706		5	AU057642.		Os05g0404600	LOC_Os05g33550.2, LOC_Os05g33550.1				GO:0008270 - zinc ion binding, GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009047 - stem , PO:0020122 - inflorescence axis , PO:0025034 - leaf , PO:0009010 - seed , PO:0009005 - root , PO:0009051 - spikelet 
23927	MBD709	OsMBD709	METHYL-CPG-BINDING PROTEIN 709	methyl-CpG-binding protein 709	METHYL-CPG-BINDING PROTEIN 709		8			Os08g0485700	LOC_Os08g37920.2, LOC_Os08g37920.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009047 - stem , PO:0020122 - inflorescence axis , PO:0009010 - seed , PO:0025034 - leaf 
23928	MBD711	OsMBD711	METHYL-CPG-BINDING PROTEIN 711	methyl-CpG-binding protein 711	METHYL-CPG-BINDING PROTEIN 711		5			Os05g0404700	LOC_Os05g33554.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0008270 - zinc ion binding		PO:0009051 - spikelet , PO:0009010 - seed , PO:0009005 - root , PO:0020122 - inflorescence axis , PO:0009047 - stem 
23929	MBD712	OsMBD712	METHYL-CPG-BINDING PROTEIN 712	methyl-CpG-binding protein 712	METHYL-CPG-BINDING PROTEIN 712		4	No NCBI RAP locus or MSU RGAP locus has been identified that match with OsMBD712 (Qu et al. 2021). AL662965 (BAC clone: OSJNBa0040D17)									
23930	MBD713	OsMBD713	METHYL-CPG-BINDING PROTEIN 713	methyl-CpG-binding protein 713	METHYL-CPG-BINDING PROTEIN 713		4			Os04g0193900	LOC_Os04g11730.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009010 - seed 
23931	MBD714	OsMBD714	METHYL-CPG-BINDING PROTEIN 714	methyl-CpG-binding protein 714	METHYL-CPG-BINDING PROTEIN 714		4			Os04g0193200	LOC_Os04g11640.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		PO:0009066 - anther , PO:0009010 - seed 
23932	MBD715	OsMBD715	METHYL-CPG-BINDING PROTEIN 715	methyl-CpG-binding protein 715	METHYL-CPG-BINDING PROTEIN 715		8			Os08g0485600	LOC_Os08g37904.1, LOC_Os08g37904.2, LOC_Os08g37904.3, LOC_Os08g37904.4, LOC_Os08g37904.6, LOC_Os08g37904.5				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009005 - root , PO:0020122 - inflorescence axis , PO:0009010 - seed 
23933	MBD716	OsMBD716	METHYL-CPG-BINDING PROTEIN 716	methyl-CpG-binding protein 716	METHYL-CPG-BINDING PROTEIN 716		4	No NCBI RAP locus or MSU RGAP locus has been identified that match with OsMBD716 (Qu et al. 2021). AL606989 (BAC clone: OSJNBb0033G08)									
23934	MBD717	OsMBD717	METHYL-CPG-BINDING PROTEIN 717	methyl-CpG-binding protein 717	METHYL-CPG-BINDING PROTEIN 717		4			Os04g0613800	LOC_Os04g52380.4, LOC_Os04g52380.3, LOC_Os04g52380.2, LOC_Os04g52380.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		PO:0009010 - seed , PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009047 - stem , PO:0020122 - inflorescence axis 
23935	MBD718	OsMBD718	METHYL-CPG-BINDING PROTEIN 718	methyl-CpG-binding protein 718	METHYL-CPG-BINDING PROTEIN 718		8			Os08g0206700	LOC_Os08g10580.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0009010 - seed , PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009047 - stem , PO:0020122 - inflorescence axis 
23936	MBD708	OsMBD708	METHYL-CPG-BINDING PROTEIN 708	methyl-CpG-binding protein 708	METHYL-CPG-BINDING PROTEIN 708		9			Os09g0473300	LOC_Os09g29750.1						PO:0020122 - inflorescence axis , PO:0009051 - spikelet , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root , PO:0009010 - seed 
23937	MBD701	OsMBD701	METHYL-CPG-BINDING PROTEIN 701	methyl-CpG-binding protein 701	METHYL-CPG-BINDING PROTEIN 701		9			Os09g0494300	LOC_Os09g32090.2, LOC_Os09g32090.1				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0003677 - DNA binding		PO:0009051 - spikelet , PO:0009047 - stem , PO:0009005 - root , PO:0020122 - inflorescence axis , PO:0009010 - seed , PO:0025034 - leaf 
23938	_		_	lecithin-cholesterol acyltransferase			9	a Cholesterol acyltransferase family protein. a potential candidate for qCTBB9 (QTL for cold tolerance at the bud-bursting on chromosome 9). 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0444200	LOC_Os09g27210.1				GO:0019432 - triglyceride biosynthetic process, GO:0006629 - lipid metabolic process, GO:0046027 - phospholipid:diacylglycerol acyltransferase activity, GO:0008374 - O-acyltransferase activity, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0005773 - vacuole, GO:0005737 - cytoplasm, GO:0005783 - endoplasmic reticulum	TO:0000303 - cold tolerance	
23939	ANTH1	OsANTH1	ANTH DOMAIN-CONTAINING PROTEIN 1	AP180 N-terminal homology domain-containing protein 1, ANTH domain-containing protein 1	ANTH DOMAIN-CONTAINING PROTEIN 1		1	GO:0072583: clathrin-dependent endocytosis.		Os01g0694900	LOC_Os01g50010.1				GO:0006897 - endocytosis, GO:0032050 - clathrin heavy chain binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0006900 - membrane budding, GO:0048268 - clathrin coat assembly, GO:0005545 - phosphatidylinositol binding, GO:0000149 - SNARE binding, GO:0005794 - Golgi apparatus, GO:0005905 - coated pit, GO:0030136 - clathrin-coated vesicle, GO:0030276 - clathrin binding		
23940	ANTH3	OsANTH3	ANTH DOMAIN-CONTAINING PROTEIN 3	AP180 N-terminal homology domain-containing protein 3, ANTH domain-containing protein 3	ANTH DOMAIN-CONTAINING PROTEIN 3	osanth3-1, osanth3-2	2	GO:0072583: clathrin-dependent endocytosis.	 Reproductive organ - Pollination, fertilization, fertility	Os02g0175700	LOC_Os02g07900.1				GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0009860 - pollen tube growth, GO:0009555 - pollen development, GO:0006897 - endocytosis, GO:0030276 - clathrin binding, GO:0030136 - clathrin-coated vesicle, GO:0005905 - coated pit, GO:0005794 - Golgi apparatus, GO:0006900 - membrane budding, GO:0048268 - clathrin coat assembly, GO:0000149 - SNARE binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0032050 - clathrin heavy chain binding, GO:0005545 - phosphatidylinositol binding, GO:0009846 - pollen germination	TO:0000639 - seed fertility	PO:0009066 - anther , PO:0025281 - pollen , PO:0001007 - pollen development stage 
23941	ANTH4	OsANTH4	ANTH DOMAIN-CONTAINING PROTEIN 4	AP180 N-terminal homology domain-containing protein 4, ANTH domain-containing protein 4	ANTH DOMAIN-CONTAINING PROTEIN 4		2	GO:0072583: clathrin-dependent endocytosis.		Os02g0803300	LOC_Os02g55970.2, LOC_Os02g55970.1				GO:0005794 - Golgi apparatus, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0006900 - membrane budding, GO:0030136 - clathrin-coated vesicle, GO:0006897 - endocytosis, GO:0005905 - coated pit, GO:0048268 - clathrin coat assembly, GO:0000149 - SNARE binding, GO:0030276 - clathrin binding, GO:0005545 - phosphatidylinositol binding, GO:0032050 - clathrin heavy chain binding		
23942	ANTH5	OsANTH5	ANTH DOMAIN-CONTAINING PROTEIN 5	AP180 N-terminal homology domain-containing protein 5, ANTH domain-containing protein 5	ANTH DOMAIN-CONTAINING PROTEIN 5		3	GO:0072583: clathrin-dependent endocytosis.		Os03g0275500	LOC_Os03g16800.2, LOC_Os03g16800.1				GO:0005905 - coated pit, GO:0048268 - clathrin coat assembly, GO:0000149 - SNARE binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0032050 - clathrin heavy chain binding, GO:0005545 - phosphatidylinositol binding, GO:0006900 - membrane budding, GO:0005794 - Golgi apparatus, GO:0006897 - endocytosis, GO:0030276 - clathrin binding, GO:0030136 - clathrin-coated vesicle		
23943	ANTH6	OsANTH6	ANTH DOMAIN-CONTAINING PROTEIN 6	AP180 N-terminal homology domain-containing protein 6, ANTH domain-containing protein 6	ANTH DOMAIN-CONTAINING PROTEIN 6		5	GO:0072583: clathrin-dependent endocytosis.		Os05g0112101	LOC_Os05g02140.1				GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0030136 - clathrin-coated vesicle, GO:0030276 - clathrin binding, GO:0006897 - endocytosis, GO:0032050 - clathrin heavy chain binding, GO:0005545 - phosphatidylinositol binding, GO:0000149 - SNARE binding, GO:0048268 - clathrin coat assembly, GO:0006900 - membrane budding, GO:0005794 - Golgi apparatus, GO:0005905 - coated pit		
23944	ANTH7	OsANTH7	ANTH DOMAIN-CONTAINING PROTEIN 7	AP180 N-terminal homology domain-containing protein 7, ANTH domain-containing protein 7	ANTH DOMAIN-CONTAINING PROTEIN 7		5	GO:0072583: clathrin-dependent endocytosis.	 Reproductive organ - Pollination, fertilization, fertility	Os05g0426100	LOC_Os05g35160.1				GO:0032050 - clathrin heavy chain binding, GO:0009860 - pollen tube growth, GO:0009555 - pollen development, GO:0006897 - endocytosis, GO:0030276 - clathrin binding, GO:0030136 - clathrin-coated vesicle, GO:0005905 - coated pit, GO:0005794 - Golgi apparatus, GO:0006900 - membrane budding, GO:0048268 - clathrin coat assembly, GO:0000149 - SNARE binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0005545 - phosphatidylinositol binding		PO:0001007 - pollen development stage , PO:0009066 - anther 
23945	ANTH8	OsANTH8	ANTH DOMAIN-CONTAINING PROTEIN 8	AP180 N-terminal homology domain-containing protein 8, ANTH domain-containing protein 8	ANTH DOMAIN-CONTAINING PROTEIN 8		5	GO:0072583: clathrin-dependent endocytosis.		Os05g0549000	LOC_Os05g47550.1				GO:0000149 - SNARE binding, GO:0009555 - pollen development, GO:0005545 - phosphatidylinositol binding, GO:0032050 - clathrin heavy chain binding, GO:0006897 - endocytosis, GO:0030276 - clathrin binding, GO:0030136 - clathrin-coated vesicle, GO:0005905 - coated pit, GO:0005794 - Golgi apparatus, GO:0006900 - membrane budding, GO:0048268 - clathrin coat assembly, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding		PO:0001007 - pollen development stage 
23946	ANTH9	OsANTH9	ANTH DOMAIN-CONTAINING PROTEIN 9	AP180 N-terminal homology domain-containing protein 9, ANTH domain-containing protein 9	ANTH DOMAIN-CONTAINING PROTEIN 9		6				LOC_Os06g06640.1						
23947	ANTH10	OsANTH10	ANTH DOMAIN-CONTAINING PROTEIN 10	AP180 N-terminal homology domain-containing protein 10, ANTH domain-containing protein 10	ANTH DOMAIN-CONTAINING PROTEIN 10		6	GO:0072583: clathrin-dependent endocytosis.		Os06g0175500	LOC_Os06g07830.1				GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0006897 - endocytosis, GO:0000149 - SNARE binding, GO:0048268 - clathrin coat assembly, GO:0005545 - phosphatidylinositol binding, GO:0032050 - clathrin heavy chain binding, GO:0006900 - membrane budding, GO:0005794 - Golgi apparatus, GO:0005905 - coated pit, GO:0030136 - clathrin-coated vesicle, GO:0030276 - clathrin binding		
23948	ANTH12	OsANTH12	ANTH DOMAIN-CONTAINING PROTEIN 12	AP180 N-terminal homology domain-containing protein 12, ANTH domain-containing protein 12	ANTH DOMAIN-CONTAINING PROTEIN 12		6	GO:0072583: clathrin-dependent endocytosis.		Os06g0699800	LOC_Os06g48630.1				GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0005545 - phosphatidylinositol binding, GO:0006897 - endocytosis, GO:0030136 - clathrin-coated vesicle, GO:0005905 - coated pit, GO:0005794 - Golgi apparatus, GO:0006900 - membrane budding, GO:0048268 - clathrin coat assembly, GO:0000149 - SNARE binding, GO:0032050 - clathrin heavy chain binding		
23949	ANTH13	OsANTH13	ANTH DOMAIN-CONTAINING PROTEIN 13	AP180 N-terminal homology domain-containing protein 13, ANTH domain-containing protein 13	ANTH DOMAIN-CONTAINING PROTEIN 13		8				LOC_Os08g34400.1						
23950	ANTH14	OsANTH14	ANTH DOMAIN-CONTAINING PROTEIN 14	AP180 N-terminal homology domain-containing protein 14, ANTH domain-containing protein 14	ANTH DOMAIN-CONTAINING PROTEIN 14		8	GO:0072583: clathrin-dependent endocytosis.	 Reproductive organ - Pollination, fertilization, fertility	Os08g0467300	LOC_Os08g36410.1				GO:0005829 - cytosol, GO:0006897 - endocytosis, GO:0030276 - clathrin binding, GO:0030136 - clathrin-coated vesicle, GO:0005905 - coated pit, GO:0005794 - Golgi apparatus, GO:0006900 - membrane budding, GO:0048268 - clathrin coat assembly, GO:0000149 - SNARE binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0032050 - clathrin heavy chain binding, GO:0005545 - phosphatidylinositol binding, GO:0009555 - pollen development, GO:0009860 - pollen tube growth, GO:0005634 - nucleus, GO:0005886 - plasma membrane		PO:0009066 - anther , PO:0001007 - pollen development stage 
23951	ANTH16	OsANTH16	ANTH DOMAIN-CONTAINING PROTEIN 16	AP180 N-terminal homology domain-containing protein 16, ANTH domain-containing protein 16	ANTH DOMAIN-CONTAINING PROTEIN 16		9	GO:0072583: clathrin-dependent endocytosis.		Os09g0472400	LOC_Os09g29680.1				GO:0032050 - clathrin heavy chain binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0000149 - SNARE binding, GO:0048268 - clathrin coat assembly, GO:0006900 - membrane budding, GO:0005794 - Golgi apparatus, GO:0006897 - endocytosis, GO:0005545 - phosphatidylinositol binding, GO:0030136 - clathrin-coated vesicle, GO:0005905 - coated pit		
23952	ANTH17	OsANTH17	ANTH DOMAIN-CONTAINING PROTEIN 17	AP180 N-terminal homology domain-containing protein 17, ANTH domain-containing protein 17	ANTH DOMAIN-CONTAINING PROTEIN 17		11	GO:0072583: clathrin-dependent endocytosis.		Os11g0244600	LOC_Os11g14000.1				GO:0000149 - SNARE binding, GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0032050 - clathrin heavy chain binding, GO:0005545 - phosphatidylinositol binding, GO:0005905 - coated pit, GO:0030136 - clathrin-coated vesicle, GO:0030276 - clathrin binding, GO:0006897 - endocytosis, GO:0006900 - membrane budding, GO:0005794 - Golgi apparatus, GO:0048268 - clathrin coat assembly		
23953	ANTH15	OsANTH15, OsFBO21, FBO21	ANTH DOMAIN-CONTAINING PROTEIN 15	AP180 N-terminal homology domain-containing protein 15, ANTH domain-containing protein 15, F-box-type E3 ubiquitin ligase O21	ANTH DOMAIN-CONTAINING PROTEIN 15		9			Os09g0449500	LOC_Os09g27660.9, LOC_Os09g27660.8, LOC_Os09g27660.7, LOC_Os09g27660.6, LOC_Os09g27660.5, LOC_Os09g27660.10, LOC_Os09g27660.4, LOC_Os09g27660.3, LOC_Os09g27660.2, LOC_Os09g27660.1						
23954	PIR1	OsPIR1	PCD-INDUCED-RESISTANCE 1	PCD-induced-resistance 1		pir1, pir1a, pir1b, pir1c	5	 The PIR1 gene was mapped in a 498 kb interval between the molecular markers RM3321 and RM3616 on chromosome 5, and the PCD phenotype is controlled by a new gene conferring rice PCD. The target region for PIR1 gene was about 498 kb and RM3790 was highly linked to the PIR1 gene. The target region for PIR1 gene was about 498 kb and comprised 65 predicted gene loci. (Chen et al. 2020) the accession number PRJNA655984 in the NCBI sequence read archives (SRA).	 Tolerance and resistance						GO:0012501 - programmed cell death	TO:0000442 - plant fresh weight, TO:0000352 - plant dry weight, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0000063 - mimic response	
23955	PMEI7	OsPEI, PEI, OsPMEI7	PECTIN METHYLESTERASE INHIBITOR 7	pectinesterase inhibitor, pectinesterase inhibitor domain containing protein, PME inhibitor 7, pectin methylesterase inhibitor 7	PECTIN METHYLESTERASE INHIBITOR 7		2	a candidate gene for qBLS2.3. OsPEI in Sattayachiti et al. 2020.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0534700	LOC_Os02g33130.1				GO:0004857 - enzyme inhibitor activity, GO:0042742 - defense response to bacterium	TO:0000203 - bacterial leaf streak disease resistance	
23956	_		NDP EPIMERASE	NDP epimerase, nucleoside-diphosphate-sugar epimerase	NDP EPIMERASE		2	a candidate gene for qBLS2.3.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0535700	LOC_Os02g33230.1				GO:0042742 - defense response to bacterium	TO:0000203 - bacterial leaf streak disease resistance	
23957	_		_	glucan endo-1, 3- beta-glucosidase precursor			8	OsMH_08T0121900 (Rice Information GateWay (RIGW)) in Ayaad et al. 2021. the potential candidate gene for a minor chalkiness QTL qPGWC8.2/qDEC8. OsMH_08T0121900 encoded glucan endo-1,3-beta-glucosidase, which is annotated as a member of the glycoside hydrolase family 17 (PF00332).	 Seed - Physiological traits						GO:0005985 - sucrose metabolic process, GO:0005982 - starch metabolic process	TO:0000266 - chalky endosperm	
23958	S6K1	OsS6K1, OsAGC7, AGC7	RIBOSOMAL PROTEIN S6 KINASE 1	ribosomal protein S6 kinase 1, AGC protein kinase 7	RIBOSOMAL PROTEIN S6 KINASE 1		3			Os03g0334000	LOC_Os03g21620.1				GO:0018105 - peptidyl-serine phosphorylation, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004674 - protein serine/threonine kinase activity		
23959	NIR2	OsNiR2, NiR2	NITRITE REDUCTASE 2	nitrite reductase 2	NITRITE REDUCTASE 2		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0765900	LOC_Os02g52730.1				GO:0010043 - response to zinc ion, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009570 - chloroplast stroma, GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding, GO:0020037 - heme binding	TO:0000351 - zinc sensitivity	
23960	_		_	MYB-like DNA- binding domain-containing protein			11		 Tolerance and resistance - Stress tolerance	Os11g0128500	LOC_Os11g03440.1				GO:0030912 - response to deep water, GO:0003677 - DNA binding, GO:0009733 - response to auxin stimulus	TO:0000524 - submergence tolerance	
23961	_		_	B3 domain-containing protein, ABIVP1 transcription factor			3	Q10QS9.	 Tolerance and resistance - Stress tolerance	Os03g0184500	LOC_Os03g08620.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance	
23962	_	OsRING389, RING389	_	Zinc finger C3HC4-type family protein, RING-type E3 ubiquitin ligase 389			12	GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os12g0113700	LOC_Os12g02210.1				GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance	
23963	_	OsRING277, RING277	_	Zinc finger RING-CH-type domain-containing protein, RING-type E3 ubiquitin ligase 277			6		 Tolerance and resistance - Stress tolerance	Os06g0340200	LOC_Os06g23274.1				GO:0016021 - integral to membrane, GO:0008270 - zinc ion binding, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance	
23964	LARGE2	OsLARGE2, OsUPL2, UPL2, OsHECT8, HECT8	UBIQUITIN PROTEIN LIGASE 2	Ubiquitin Protein Ligase 2, HECT-type E3 ubiquitin ligase 8	UBIQUITIN PROTEIN LIGASE 2	arge2, large2-1, large2-2, large2-3, large2-4, large2-5, large2-6, large2-7, large2-8, large2-9	12	GO:0061630: ubiquitin protein ligase activity. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Vegetative organ - Shoot apical meristem(SAM),  Character as QTL - Yield and productivity,  Seed - Morphological traits,  Reproductive organ - panicle,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os12g0428600	LOC_Os12g24080.1				GO:0005737 - cytoplasm, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0016567 - protein ubiquitination, GO:0045732 - positive regulation of protein catabolic process, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0000209 - protein polyubiquitination, GO:0008285 - negative regulation of cell proliferation, GO:0010073 - meristem maintenance	TO:0006032 - panicle size, TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0000370 - leaf width, TO:0002759 - grain number, TO:0000339 - stem thickness, TO:0006020 - shoot apical meristem development	PO:0009010 - seed , PO:0009049 - inflorescence , PO:0000229 - flower meristem , PO:0020148 - shoot apical meristem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root 
23965	FSV1	OsFSV1, OsMLH3, MLH3	FEMALE STERILE VARIATION 1	MutL-homolog 3, female sterile variation 1	MUTL-HOMOLOG 3	fsv1, Osmlh3, Osmlh3-1, Osmlh3-2, Osmlh3-3, Osmlh3-4	9	GO:0035825: homologous recombination.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility - Meiosis	Os09g0551900	LOC_Os09g37930.1				GO:0007292 - female gamete generation, GO:0010229 - inflorescence development, GO:0032300 - mismatch repair complex, GO:0016887 - ATPase activity, GO:0048229 - gametophyte development, GO:0009553 - embryo sac development, GO:0051321 - meiotic cell cycle, GO:0048236 - plant-type spore development, GO:0006298 - mismatch repair, GO:0005634 - nucleus	TO:0000437 - male sterility, TO:0000358 - female sterility, TO:0000455 - seed set percent, TO:0000416 - embryosac abortion, TO:0000421 - pollen fertility, TO:0000621 - inflorescence development trait	PO:0025034 - leaf , PO:0009082 - spikelet floret , PO:0009030 - carpel , PO:0025477 - floral organ primordium , PO:0001083 - inflorescence development stage , PO:0009029 - stamen , PO:0009005 - root , PO:0009047 - stem , PO:0009072 - plant ovary 
23966	TPR	OsTPR	TRANSLOCATED PROMOTER REGION	translocated promoter region gene	TRANSLOCATED PROMOTER REGION PROTEIN		2	homologous to AtTPR (A. thaliana translocated promoter region gene).	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os02g0741500	LOC_Os02g50799.1, LOC_Os02g50790.2				GO:0006406 - mRNA export from nucleus, GO:0017056 - structural constituent of nuclear pore, GO:0005643 - nuclear pore, GO:0010229 - inflorescence development	TO:0000396 - grain yield, TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait, TO:0000456 - spikelet number, TO:0000050 - inflorescence branching, TO:0000501 - spikelet weight	PO:0001083 - inflorescence development stage 
23967	_	Sc	_	Hybrid sterility C		Sc-j, Sc-i, Sc-is, Sc-ia, Sc-ib1, and Sc-ib2	3	cDNA:CT835281. a DUF1618 protein. Sc-ia, Sc-ib1, and Sc-ib2, each contain the complete Os03g0247300-homologous sequence, and are located in three tandemly duplicated segments.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility	Os03g0247300	LOC_Os03g14310.1					TO:0000218 - pollen abortion type, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility	PO:0009066 - anther , PO:0025281 - pollen 
23968	UGT706C2	OsUGT706C2	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C2	UDP-dependent glucosyltransferase 706C2	UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C2		3	GO:2000762: regulation of phenylpropanoid metabolic process. GO:2000377: regulation of reactive oxygen species metabolic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0841600	LOC_Os03g62480.1				GO:0008194 - UDP-glycosyltransferase activity, GO:0009812 - flavonoid metabolic process, GO:0009698 - phenylpropanoid metabolic process, GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity, TO:0000290 - flavonoid content	
23969	_		PLASTID RIBOSOMAL PROTEIN L27	plastid ribosomal protein L27, plastid RPL27 protein	PLASTID RIBOSOMAL PROTEIN L27		1	O65037.	 Other	Os01g0924000	LOC_Os01g69950.1				GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0005840 - ribosome, GO:0009507 - chloroplast		
23970	TIPS-11-9	OsTIPS-11-9	_				11	a candidate gene for qTIPS-11. a glycosyl hydrolase. MH425880, MH425881, MH425882, MH425883, MH425884, MH425885, MH425886, MH425887. GEO ID: 74188886, GEO ID: 47801267.	 Character as QTL - Yield and productivity,  Vegetative organ - Root,  Biochemical character	Os11g0673200	LOC_Os11g44950.2, LOC_Os11g44950.1				GO:0005576 - extracellular region, GO:0046556 - alpha-N-arabinofuranosidase activity, GO:0009044 - xylan 1,4-beta-xylosidase activity, GO:0031222 - arabinan catabolic process, GO:0045493 - xylan catabolic process, GO:0009505 - plant-type cell wall, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0009733 - response to auxin stimulus	TO:0000163 - auxin sensitivity, TO:0000457 - total biomass yield, TO:0001013 - lateral root number	PO:0007517 - lateral root emergence stage , PO:0020121 - lateral root 
23971	PIPR1	OsPiPR1	RICE BLAST PARTIAL RESISTANCE GENE 1 	rice blast Partial Resistance gene 1	RICE BLAST PARTIAL RESISTANCE PROTEIN 1 		4	a nucleotide-binding site leucine-rich repeat (NLR) protein.	 Tolerance and resistance - Disease resistance	Os04g0621700	LOC_Os04g53050.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
23972	MESL	OsMESL	METHYL ESTERASE-LIKE	methyl esterase-like	METHYL ESTERASE-LIKE	osmesl	7	GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0603600	LOC_Os07g41230.1				GO:0009507 - chloroplast, GO:0009696 - salicylic acid metabolic process, GO:0009694 - jasmonic acid metabolic process, GO:0080031 - methyl salicylate esterase activity, GO:0080032 - methyl jasmonate esterase activity, GO:0080030 - methyl indole-3-acetate esterase activity, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0002668 - jasmonic acid content	PO:0000003 - whole plant , PO:0009029 - stamen , PO:0020103 - flag leaf , PO:0025034 - leaf 
23973	CLSY1	OsCLSY1, CHR722, OsCHR722	CLASSY 1	chromatin remodeling factor 722	CHROMATIN REMODELING FACTOR 722	clsy1	7	GO:0140658: ATP-dependent chromatin remodeler activity. GO:0080188: gene silencing by RNA-directed DNA methylation.	 Other,  Tolerance and resistance - Disease resistance,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os07g0692600	LOC_Os07g49210.1				GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0030912 - response to deep water, GO:0034059 - response to anoxia, GO:0009413 - response to flooding, GO:0009845 - seed germination, GO:0006306 - DNA methylation, GO:0050832 - defense response to fungus	TO:0000114 - flooding related trait, TO:0000074 - blast disease, TO:0000524 - submergence tolerance	PO:0007057 - 0 seed germination stage 
23974	MYBAS1	OsMYBAS1, Os2R_MYB92, 2R_MYB92	MYB ALTERNATIVE SPLICING 1	Transcription factor MYBAS1, MYB alternative splicing 1, R2R3-MYB Transcription Factor 92		osmybas1, osmybas1-1, osmybas1-2	11	Q53NK6. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. 	 Vegetative organ - Culm,  Seed - Physiological traits - Dormancy,  Other,  Character as QTL - Germination,  Tolerance and resistance - Stress tolerance	Os11g0700500	LOC_Os11g47460.2, LOC_Os11g47460.1, LOC_Os11g47460.4, LOC_Os11g47460.3				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009413 - response to flooding, GO:0005634 - nucleus, GO:0006979 - response to oxidative stress, GO:0080006 - internode patterning, GO:0034059 - response to anoxia, GO:0009739 - response to gibberellin stimulus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0009845 - seed germination	TO:0000166 - gibberellic acid sensitivity, TO:0000114 - flooding related trait, TO:0002657 - oxidative stress, TO:0001034 - relative plant height, TO:0000516 - relative root length, TO:0000544 - mesocotyl length	PO:0007057 - 0 seed germination stage , PO:0009005 - root , PO:0009010 - seed 
23975	FMOGS-OX-L5	OsFMOGS-OX-L5	_	Flavin-containing monooxygenase, OsFMOGS-OX-like5, FMOGS-OX-like5	_		10	SCC (sulfur-containing compound) biosynthetic gene. 	 Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy,  Biochemical character	Os10g0553800	LOC_Os10g40570.1				GO:0009845 - seed germination, GO:0044272 - sulfur compound biosynthetic process, GO:0004499 - flavin-containing monooxygenase activity, GO:0030912 - response to deep water, GO:0050660 - FAD binding, GO:0009413 - response to flooding, GO:0034059 - response to anoxia, GO:0050661 - NADP or NADPH binding	TO:0000524 - submergence tolerance, TO:0000114 - flooding related trait	PO:0007057 - 0 seed germination stage 
23976	_		_	Unknown gene	_		11		 Seed - Physiological traits - Dormancy,  Tolerance and resistance - Stress tolerance	Os11g0698567					GO:0009845 - seed germination, GO:0034059 - response to anoxia, GO:0030912 - response to deep water, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance, TO:0000114 - flooding related trait	PO:0007057 - 0 seed germination stage 
23977	GERLP	OsGERLP	GENE ENCODING RIBOSOMAL LIKE L32 PROTEIN	Gene Encoding Ribosomal like L32 Protein	GENE ENCODING RIBOSOMAL LIKE L32 PROTEIN		3	a protein similar to a bacterial ribosomal L32 protein.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Other	Os03g0168900	LOC_Os03g07290.1				GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0015934 - large ribosomal subunit, GO:0010044 - response to aluminum ion, GO:0005762 - mitochondrial large ribosomal subunit, GO:0046720 - citric acid secretion, GO:0006412 - translation	TO:0000227 - root length, TO:0000354 - aluminum sensitivity	
23978	LOWAC1	LowAC1, OsLowAC1	LOW AMYLOSE CONTENT 1	low amylose content 1		lowac1	2	an RNA recognition motif (RRM) protein. GO:2000942: regulation of amylopectin metabolic process.	 Seed - Physiological traits - Storage substances,  Other	Os02g0167500	LOC_Os02g07070.3, LOC_Os02g07070.2, LOC_Os02g07070.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0003723 - RNA binding, GO:0010581 - regulation of starch biosynthetic process	TO:0000105 - dull endosperm, TO:0000196 - amylose content	
23979	LTP5	OsLTP5	LIPID TRANSFER PROTEIN 5	lipid transfer protein 5	LIPID TRANSFER PROTEIN 5		11	CT841607 (Oryza rufipogon). Q7XJ39.	 Tolerance and resistance	Os11g0115400	LOC_Os11g02389.1				GO:0016020 - membrane, GO:0006869 - lipid transport, GO:0008289 - lipid binding, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006952 - defense response, GO:0070542 - response to fatty acid		PO:0009046 - flower , PO:0009047 - stem , PO:0009006 - shoot system 
23980	FSE5	OsFSE5, OsPORR1, PORR1	FLOURY SHRUNKEN ENDOSPERM 5	PORR Domain-Containing Protein 1, floury shrunken endosperm 5	PORR DOMAIN-CONTAINING PROTEIN 1	fse5	9	GO:0090351: seedling development. PO:0030123: panicle inflorescence.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Embryo,  Seed - Morphological traits	Os09g0473400	LOC_Os09g29760.1				GO:0032981 - mitochondrial respiratory chain complex I assembly, GO:0000373 - Group II intron splicing, GO:0009790 - embryonic development, GO:0000963 - mitochondrial RNA processing, GO:0005739 - mitochondrion, GO:0048316 - seed development, GO:0006979 - response to oxidative stress, GO:0009845 - seed germination, GO:0070584 - mitochondrion morphogenesis	TO:0000100 - shrunken endosperm, TO:0000430 - germination rate, TO:0000280 - seedling vigor, TO:0000104 - floury endosperm, TO:0000620 - embryo development trait, TO:0000639 - seed fertility, TO:0001026 - respiration rate	PO:0009010 - seed , PO:0001170 - seed development stage , PO:0007057 - 0 seed germination stage , PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0007631 - plant embryo stage 
23981	MISF68	OsMISF68	MITOCHONDRIAL INTRON SPLICING FACTOR 68	mitochondrial intron splicing factor 68	MITOCHONDRIAL INTRON SPLICING FACTOR 68		2			Os02g0266200	LOC_Os02g16650.1				GO:0000373 - Group II intron splicing, GO:0032981 - mitochondrial respiratory chain complex I assembly, GO:0000963 - mitochondrial RNA processing, GO:0005739 - mitochondrion		
23982	ABO6	OsABO6	ABA OVERLY SENSITIVE 6	ABA overly sensitive 6			1		 Other	Os01g0118100	LOC_Os01g02884.1				GO:0003724 - RNA helicase activity, GO:0003723 - RNA binding, GO:0005524 - ATP binding		
23983	DEK35	OsDEK35	DEFECTIVE KERNEL 35	Defective kernel 35			3			Os03g0712900	LOC_Os03g50500.1						
23984	DEK43	OsDEK43, PPR5, OsPPR5	DEFECTIVE KERNEL 43	Defective kernel 43, PENTATRICOPEPTIDE REPEAT5	PENTATRICOPEPTIDE REPEAT 5	ppr5	5	PO:0030123: panicle inflorescence. GO:1900140: regulation of seedling development. TO:0000949: seedling growth and development trait. TO:0000942: aleurone layer morphology trait. GO:2001169: regulation of ATP biosynthetic process. TO:0000975: grain width. GO:0080186: developmental vegetative growth.	 Character as QTL - Grain quality,  Seed - Morphological traits - Grain shape,  Seed - Physiological traits - Storage substances,  Character as QTL - Plant growth activity	Os05g0207200	LOC_Os05g11700.1				GO:0007005 - mitochondrion organization, GO:0010230 - alternative respiration, GO:0006754 - ATP biosynthetic process, GO:0032981 - mitochondrial respiratory chain complex I assembly, GO:0009960 - endosperm development, GO:0000373 - Group II intron splicing, GO:0005739 - mitochondrion	TO:0000196 - amylose content, TO:0000374 - breakdown viscosity, TO:0000104 - floury endosperm, TO:0000734 - grain length, TO:0000598 - protein content, TO:0000653 - seed development trait, TO:0002655 - starch grain size, TO:0000100 - shrunken endosperm, TO:0000399 - grain thickness, TO:0000382 - 1000-seed weight, TO:0000409 - peak viscosity, TO:0000487 - endosperm color, TO:0000408 - hot paste viscosity, TO:0000575 - endosperm related trait, TO:0000696 - starch content	PO:0007633 - endosperm development stage , PO:0009047 - stem , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009089 - endosperm , PO:0009049 - inflorescence , PO:0009005 - root 
23985	REM20	OsREM20	REPRODUCTIVE MERISTEM 20			pOsREM20IR, pOsREM20deltaIR	7	Q84YL3. a B3 domain transcription factor.	 Other,  Character as QTL - Yield and productivity	Os07g0232100	LOC_Os07g12820.1				GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000447 - filled grain number, TO:0000396 - grain yield	
23986	TOD1	OsTOD1	TURGOR REGULATION DEFECT 1	Turgor regulation defect 1	TURGOR REGULATION DEFECT 1 PROTEIN		1	GO:0071633: dihydroceramidase activity. GO:1902456: regulation of stomatal opening. GO:0090406: pollen tube.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os01g0210400	LOC_Os01g11220.1				GO:0009860 - pollen tube growth, GO:0005794 - Golgi apparatus, GO:0006668 - sphinganine-1-phosphate metabolic process, GO:0010118 - stomatal movement, GO:0006665 - sphingolipid metabolic process		PO:0025281 - pollen , PO:0025195 - pollen tube cell 
23987	SUMO4	OsSUMO4	SMALL UBIQUITIN LIKE MODIFIER 4	small ubiquitin like modifier 4, small ubiquitin like modifier protein 4, SUMO protein 4	SMALL UBIQUITIN LIKE MODIFIER 4		1	GO:0044389: ubiquitin-like protein ligase binding.		Os01g0852300             					GO:0031386 - protein tag, GO:0005634 - nucleus, GO:0016925 - protein sumoylation		PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0009005 - root 
23988	SUMO5	OsSUMO5	SMALL UBIQUITIN LIKE MODIFIER 5	small ubiquitin like modifier 5, small ubiquitin like modifier protein 5, SUMO protein 5	SMALL UBIQUITIN LIKE MODIFIER 5		7	GO:0044389: ubiquitin-like protein ligase binding.		Os07g0574200             	LOC_Os07g38650.1				GO:0031386 - protein tag, GO:0005634 - nucleus, GO:0016925 - protein sumoylation		PO:0009051 - spikelet , PO:0020103 - flag leaf , PO:0009005 - root , PO:0025034 - leaf , PO:0009010 - seed 
23989	SUMO6	OsSUMO6	SMALL UBIQUITIN LIKE MODIFIER 6	small ubiquitin like modifier 6, small ubiquitin like modifier protein 6, SUMO protein 6	SMALL UBIQUITIN LIKE MODIFIER 6		7	GO:0044389: ubiquitin-like protein ligase binding.		Os07g0574300             	LOC_Os07g38660.1				GO:0005634 - nucleus, GO:0031386 - protein tag, GO:0016925 - protein sumoylation		PO:0009051 - spikelet , PO:0025034 - leaf , PO:0020103 - flag leaf 
23990	VST1	OsVST1	VAP-RELATED SUPPRESSOR OF TOO MANY MOUTHS 1		VAP-RELATED SUPPRESSOR OF TOO MANY MOUTHS1 		8	GO:0090158: endoplasmic reticulum membrane organization. GO:0061817: endoplasmic reticulum-plasma membrane tethering.	 Vegetative organ - Root,  Vegetative organ - Culm	Os08g0141300	LOC_Os08g04620.1				GO:0005886 - plasma membrane, GO:0009739 - response to gibberellin stimulus, GO:0005789 - endoplasmic reticulum membrane	TO:0000227 - root length, TO:0000043 - root anatomy and morphology trait, TO:0000207 - plant height, TO:0002692 - root meristem development	
23991	VST2	OsVST2	VAP-RELATED SUPPRESSOR OF TOO MANY MOUTHS 2		VAP-RELATED SUPPRESSOR OF TOO MANY MOUTHS 2		7	GO:0090158: endoplasmic reticulum membrane organization. GO:0061817: endoplasmic reticulum-plasma membrane tethering.		Os07g0558800	LOC_Os07g37270.1				GO:0005789 - endoplasmic reticulum membrane, GO:0005886 - plasma membrane		
23992	GW5L	OsGW5L	GRAIN WIDTH 5-LIKE	Grain Width 5-Like, GW5-Like	GRAIN WIDTH 5-LIKE		1	TO:0000975: grain width. GO:1901001: negative regulation of response to salt stress. GO:1900459: positive regulation of brassinosteroid mediated signaling pathway.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os01g0190500	LOC_Os01g09470.1				GO:0009742 - brassinosteroid mediated signaling, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane	TO:0006001 - salt tolerance, TO:0000734 - grain length, TO:0000590 - grain weight, TO:0002677 - brassinosteroid sensitivity	
23993	APX9	OsAPX9	ASCORBATE PEROXIDASE 9	L-ascorbate peroxidase 9	ASCORBATE PEROXIDASE 9	APX9-HS, APX9-OR	9	O. sativa japonica (APX9HS) and O. rufipogon (APX9OR) alleles. 	 Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Biochemical character	Os09g0538600	LOC_Os09g36750.2, LOC_Os09g36750.1				GO:0004601 - peroxidase activity, GO:0009507 - chloroplast, GO:0000302 - response to reactive oxygen species, GO:0042744 - hydrogen peroxide catabolic process, GO:0034599 - cellular response to oxidative stress, GO:0020037 - heme binding	TO:0000207 - plant height, TO:0000371 - yield trait, TO:0000357 - growth and development trait	
23994	_	MS5	_	MALE STERILE 5			9	a tetratricopeptide repeat domain-containing protein.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0538500	LOC_Os09g36740.1					TO:0000437 - male sterility	
23995	SPL36	OsSPL36	SPOTTED LEAF 36	spotted leaf 36		spl36	12	a receptor-like protein kinase containing leucine-rich domains. GO:1901001: negative regulation of response to salt stress. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence.	 Coloration - Chlorophyll,  Tolerance and resistance - Lesion mimic,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os12g0182300	LOC_Os12g08180.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0043067 - regulation of programmed cell death, GO:0031347 - regulation of defense response, GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0046466 - membrane lipid catabolic process, GO:0009658 - chloroplast organization, GO:0042742 - defense response to bacterium	TO:0002715 - chloroplast development trait, TO:0000175 - bacterial blight disease resistance, TO:0000293 - chlorophyll-a content, TO:0000605 - hydrogen peroxide content, TO:0000063 - mimic response, TO:0001027 - net photosynthetic rate, TO:0000357 - growth and development trait, TO:0006001 - salt tolerance, TO:0000295 - chlorophyll-b content	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0009005 - root 
23996	_	OsWAK1, WAK1	_	wall-associated protein kinase 1			11	AF327447.	 Tolerance and resistance - Disease resistance	Os11g0690066					GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009986 - cell surface, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0004674 - protein serine/threonine kinase activity, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding	TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
23997	_		_	AtSAC3B homolog			7	a SAC3/GANP protein. a homolog of A. thaliana protein AtSAC3B, a component of a transcription and mRNA export complex.		Os07g0646000	LOC_Os07g45160.1						
23998	_		_	AtSAC3C homolog			3	a SAC3/GANP protein. a homolog of A. thaliana protein AtSAC3C, a component of a transcription and mRNA export complex.		Os03g0352200	LOC_Os03g22870.5, LOC_Os03g22870.4, LOC_Os03g22870.3, LOC_Os03g22870.2, LOC_Os03g22870.1				GO:0006406 - mRNA export from nucleus		
23999	SPPL1	OsSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1	Signal peptide peptidase-like 1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1		10	Q7G7C7. GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane. GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane.	 Biochemical character	Os10g0393100	LOC_Os10g25360.2, LOC_Os10g25360.1				GO:0006465 - signal peptide processing, GO:0042500 - aspartic endopeptidase activity, intramembrane cleaving, GO:0033619 - membrane protein proteolysis, GO:0010008 - endosome membrane, GO:0005802 - trans-Golgi network, GO:0030660 - Golgi-associated vesicle membrane		
24000	SAT1;3	OsSAT, SAT, OsSAT1;3	SERINE ACETYLTRANSFERASE 1;3	serine acetyl transferase, serine acetyltransferase 1;3	SERINE ACETYLTRANSFERASE 1;3		5	Q0DGG8.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0533500	LOC_Os05g45710.1				GO:0005829 - cytosol, GO:0006535 - cysteine biosynthetic process from serine, GO:0009001 - serine O-acetyltransferase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0025034 - leaf 
24001	SIR	OsSiR	_				5		 Biochemical character	Os05g0503300	LOC_Os05g42350.1				GO:0020037 - heme binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0000103 - sulfate assimilation, GO:0016002 - sulfite reductase activity, GO:0050311 - sulfite reductase (ferredoxin) activity, GO:0046872 - metal ion binding, GO:0009337 - sulfite reductase complex (NADPH), GO:0009570 - chloroplast stroma, GO:0042644 - chloroplast nucleoid		
24002	ZF	OsZF, OsRING28, RING28	_	zinc finger protein, RING-type E3 ubiquitin ligase 28		zf-4, zf-8		a C3HC4-type domain-containing zinc finger protein.	 Tolerance and resistance - Disease resistance	Os10g0142100	LOC_Os10g05230.3, LOC_Os10g05230.2, LOC_Os10g05230.1				GO:0050832 - defense response to fungus, GO:0004842 - ubiquitin-protein ligase activity	TO:0000074 - blast disease	
24003	_	DOPA	_	4, 5-DOPA DIOXYGENASE EXTRADIOL-LIKE PROTEIN			1		 Biochemical character	Os01g0878900	LOC_Os01g65690.2, LOC_Os01g65690.1				GO:0016701 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, GO:0008198 - ferrous iron binding, GO:0051213 - dioxygenase activity, GO:0008270 - zinc ion binding, GO:0006725 - cellular aromatic compound metabolic process		
24004	_	CCD1, OsCCD1	_	CAROTENOID 9, 10-CLEAVAGE DIOXYGENASE 1			8		 Biochemical character	Os08g0371200					GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0046872 - metal ion binding		
24005	GSDA1	OsGSDA1	GUANOSINE DEAMINASE 1	guanosine deaminase 1	GUANOSINE DEAMINASE 1		3	putative rice ortholog of AtGSDA.	 Biochemical character	Os03g0833900	LOC_Os03g61810.1				GO:0008270 - zinc ion binding, GO:0016787 - hydrolase activity, GO:0047974 - guanosine deaminase activity, GO:0006152 - purine nucleoside catabolic process		
24006	_	NAT	_	nucleobase-ascorbate transporter			1		 Biochemical character	Os01g0759900	LOC_Os01g55500.4, LOC_Os01g55500.3, LOC_Os01g55500.2, LOC_Os01g55500.1				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane		
24007	_	NAT	_	nucleobase-ascorbate transporter			8		 Biochemical character	Os08g0369000	LOC_Os08g28170.1				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane		
24008	_	NAT	_	nucleobase-ascorbate transporter			7		 Biochemical character	Os07g0490500	LOC_Os07g30810.1				GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
24009	_	NAT	_	nucleobase-ascorbate transporter			9			Os09g0320400	LOC_Os09g15170.1				GO:0016021 - integral to membrane		
24010	KEAP1	OsKEAP1, OsNRP2, NRP2	KELCH-LIKE ECH-ASSOCIATED PROTEIN 1	Kelch-like ECH-associated protein 1, N-rich protein 2	KELCH-LIKE ECH-ASSOCIATED PROTEIN 1	oskeap1, oskeap1-1, oskeap1-2	1		 Character as QTL - Germination,  Seed - Physiological traits - Dormancy,  Tolerance and resistance - Disease resistance	Os01g0165200	LOC_Os01g07140.2, LOC_Os01g07140.1				GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0051775 - response to redox state, GO:0045454 - cell redox homeostasis, GO:0050832 - defense response to fungus, GO:0009845 - seed germination	TO:0000357 - growth and development trait, TO:0000074 - blast disease, TO:0000615 - abscisic acid sensitivity	PO:0007057 - 0 seed germination stage 
24011	SNRK2.11	OsSnRK2.11, SnRK2.11	SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE 2.11	Sucrose nonfermenting-1-related protein kinase 2.11	SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE 2.11		5		 Biochemical character	Os05g0433100	LOC_Os05g35760.1, LOC_Os05g35770.1				GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
24012	SNRK3.19	OsSnRK3.19, SnRK3.19	SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE 3.19	Sucrose nonfermenting-1-related protein kinase 3.19	SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE 3.19		5		 Biochemical character	Os05g0476466	LOC_Os05g39900.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
24013	VQ40	OsVQ40	VQ MOTIF-CONTAINING PROTEIN 40	VQ motif-containing protein 40, valine-glutamine protein 40	VQ MOTIF-CONTAINING PROTEIN 40		3	GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os03g0190000	LOC_Os03g09045.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
24014	MATE3	OsMATE3	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 3	multidrug and toxic compound extrusion 3	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 3		1	TO:0001109: grain color trait.	 Seed - Morphological traits,  Coloration - Anthocyanin,  Biochemical character	Os01g0766000	LOC_Os01g56050.1				GO:0005886 - plasma membrane, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0042910 - xenobiotic transporter activity, GO:0016020 - membrane, GO:0015297 - antiporter activity	TO:0000071 - anthocyanin content	
24015	MATE7	OsMATE7	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 7	multidrug and toxic compound extrusion 7	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 7		2		 Biochemical character	Os02g0821600	LOC_Os02g57580.1, LOC_Os02g57570.1				GO:0005783 - endoplasmic reticulum, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0042910 - xenobiotic transporter activity, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015297 - antiporter activity, GO:0005886 - plasma membrane		
24016	MATE33	OsMATE33	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 33	multidrug and toxic compound extrusion 33	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 33		8		 Biochemical character	Os08g0550200	LOC_Os08g43654.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0015297 - antiporter activity, GO:0022857 - transmembrane transporter activity, GO:0042910 - xenobiotic transporter activity, GO:0016020 - membrane, GO:0005774 - vacuolar membrane		
24017	MATE55	OsMATE55	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 55	multidrug and toxic compound extrusion 55	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 55		12		 Biochemical character	Os12g0615700	LOC_Os12g42130.1				GO:0042910 - xenobiotic transporter activity, GO:0015299 - solute:hydrogen antiporter activity, GO:0016020 - membrane, GO:0005774 - vacuolar membrane, GO:0022857 - transmembrane transporter activity, GO:0010231 - maintenance of seed dormancy, GO:0010023 - proanthocyanidin biosynthetic process, GO:0016021 - integral to membrane, GO:0015297 - antiporter activity, GO:0009705 - plant-type vacuole membrane		
24018	MATE13	OsMATE13	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 13	multidrug and toxic compound extrusion 13	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 13		3		 Biochemical character	Os03g0571700	LOC_Os03g37470.1				GO:0016020 - membrane, GO:0015297 - antiporter activity, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0042910 - xenobiotic transporter activity		
24019	MATE12	OsMATE12	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 12	multidrug and toxic compound extrusion 12	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 12		3		 Biochemical character	Os03g0570800	LOC_Os03g37411.1				GO:0016020 - membrane, GO:0042910 - xenobiotic transporter activity, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0015297 - antiporter activity		
24020	MATE31	OsMATE31	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 31	multidrug and toxic compound extrusion 31	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 31		8		 Biochemical character	Os08g0480000	LOC_Os08g37432.2, LOC_Os08g37432.1				GO:0016021 - integral to membrane, GO:0015297 - antiporter activity, GO:0016020 - membrane, GO:0042910 - xenobiotic transporter activity, GO:0022857 - transmembrane transporter activity		
24021	MATE35	OsMATE35	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 35	multidrug and toxic compound extrusion 35	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 35		9		 Biochemical character	Os09g0468000	LOC_Os09g29284.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0042910 - xenobiotic transporter activity, GO:0015297 - antiporter activity, GO:0016020 - membrane		
24022	MATE48	OsMATE48	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 48	multidrug and toxic compound extrusion 48	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 48		11		 Biochemical character	Os11g0129000	LOC_Os11g03484.1				GO:0015297 - antiporter activity, GO:0022857 - transmembrane transporter activity, GO:0042910 - xenobiotic transporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane		
24023	MATE51	OsMATE51	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 51	multidrug and toxic compound extrusion 51	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 51		12		 Biochemical character	Os12g0125500	LOC_Os12g03200.3, LOC_Os12g03200.2, LOC_Os12g03200.1				GO:0016020 - membrane, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane		
24024	MATE47	OsMATE47	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 47	multidrug and toxic compound extrusion 47	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 47		11		 Biochemical character	Os11g0126100	LOC_Os11g03240.1				GO:0042910 - xenobiotic transporter activity, GO:0022857 - transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0015297 - antiporter activity		
24025	MATE52	OsMATE52	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 52	multidrug and toxic compound extrusion 52	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 52		12		 Biochemical character	Os12g0125800	LOC_Os12g03230.1				GO:0022857 - transmembrane transporter activity, GO:0042910 - xenobiotic transporter activity, GO:0015297 - antiporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane		
24026	MATE49	OsMATE49	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 49	multidrug and toxic compound extrusion 49	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 49		11		 Biochemical character	Os11g0129200	LOC_Os11g03500.1				GO:0042910 - xenobiotic transporter activity, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane, GO:0015297 - antiporter activity		
24027	MATE53	OsMATE53	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 53	multidrug and toxic compound extrusion 53	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 53		12		 Biochemical character	Os12g0126000	LOC_Os12g03260.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity, GO:0015297 - antiporter activity, GO:0042910 - xenobiotic transporter activity		
24028	GNAT2	OsGNAT2, HHC2, OsHHC2	GCN5-RELATED N-ACETYLTRANSFERASE 2	homolog of OsglHAT1 on chromosome 2	GCN5-RELATED N-ACETYLTRANSFERASE 2	osgnat2	2	LC593243. an ortholog for barley MND1.	 Biochemical character	Os02g0180400	LOC_Os02g08400.1				GO:0008080 - N-acetyltransferase activity, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
24029	BE2	OsBE2, TGW12a, OsTGW12a	_	thousand-grain weight 12a		osbe2	12	LC593241. an ortholog for barley MND8. TO:0000975: grain width.	 Seed - Physiological traits - Storage substances,  Biochemical character,  Seed - Morphological traits - Grain shape	Os12g0552600	LOC_Os12g36660.1				GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0015297 - antiporter activity, GO:0042910 - xenobiotic transporter activity	TO:0000590 - grain weight, TO:0000266 - chalky endosperm, TO:0000592 - 1000-dehulled grain weight	
24030	SMG4	OsBE1, OsSMG4, BE1	SMALL GRAIN 4			osbe1	3	LC593240. an ortholog for barley MND8.	 Biochemical character,  Seed - Morphological traits - Grain shape	Os03g0839200	LOC_Os03g62270.1				GO:0016021 - integral to membrane, GO:0042910 - xenobiotic transporter activity, GO:0005802 - trans-Golgi network, GO:0015297 - antiporter activity, GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane	TO:0000397 - grain size, TO:0000735 - plastochron	PO:0009047 - stem , PO:0000017 - vascular leaf primordium 
24031	CLPS1	OsClpS1, ClpS1	PLASTID CASEINOLYTIC PROTEASE S1	Plastid caseinolytic protease S1	PLASTID CASEINOLYTIC PROTEASE S1		8		 Biochemical character	Os08g0432500	LOC_Os08g33540.2, LOC_Os08g33540.1				GO:0006508 - proteolysis, GO:0030163 - protein catabolic process		
24032	PGDH1	OsPGDH1	3-PHOSPHOGLYCERATE DEHYDROGENASE 1	3-phosphoglycerate dehydrogenase 1	3-PHOSPHOGLYCERATE DEHYDROGENASE 1		4	GO:1904640: response to methionine. GO:1905374: response to homocysteine.	 Biochemical character	Os04g0650800	LOC_Os04g55720.2, LOC_Os04g55720.1				GO:0043200 - response to amino acid stimulus, GO:0006564 - L-serine biosynthetic process, GO:0004617 - phosphoglycerate dehydrogenase activity, GO:0051287 - NAD or NADH binding, GO:0009570 - chloroplast stroma		
24033	PGDH2	OsPGDH2	3-PHOSPHOGLYCERATE DEHYDROGENASE 2	3-phosphoglycerate dehydrogenase 2	3-PHOSPHOGLYCERATE DEHYDROGENASE 2		8	GO:1904640: response to methionine. GO:1905374: response to homocysteine.	 Biochemical character	Os08g0447000	LOC_Os08g34720.1				GO:0009570 - chloroplast stroma, GO:0006564 - L-serine biosynthetic process, GO:0004617 - phosphoglycerate dehydrogenase activity, GO:0051287 - NAD or NADH binding, GO:0043200 - response to amino acid stimulus		
24034	PGDH3	OsPGDH3	3-PHOSPHOGLYCERATE DEHYDROGENASE 3	3-phosphoglycerate dehydrogenase 3	3-PHOSPHOGLYCERATE DEHYDROGENASE 3		6	GO:1904640: response to methionine. GO:1905374: response to homocysteine.	 Biochemical character	Os06g0655100	LOC_Os06g44460.1				GO:0006564 - L-serine biosynthetic process, GO:0051287 - NAD or NADH binding, GO:0004617 - phosphoglycerate dehydrogenase activity, GO:0009570 - chloroplast stroma, GO:0043200 - response to amino acid stimulus		
24035	_		_	serine threonine kinase			6	One of the five candidate genes of QTL on chromosome 6 for seed and straw N content. GO:1901698: response to nitrogen compound.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0291500	LOC_Os06g18820.2, LOC_Os06g18820.1				GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity	
24036	_		_	a hypothetical protein			6	One of the five candidate genes of QTL on chromosome 6 for seed and straw N content. 	 Tolerance and resistance - Stress tolerance	Os06g0290701					GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
24037	ETG1	OsETG1	E2F TARGET GENE 1				1	the candidate gene of QTL on chromosome 1 for seed and straw N content. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance	Os01g0166800	LOC_Os01g07260.1				GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity	
24038	_		_	nitrate induced protein, nitrate-induced NOI protein			6	One of the five candidate genes of QTL on chromosome 6 for seed and straw N content. GO:1901698: response to nitrogen compound.	 Tolerance and resistance - Stress tolerance	Os06g0286400	LOC_Os06g17870.1				GO:0042594 - response to starvation	TO:0000011 - nitrogen sensitivity	
24039	ANK1 	OsANK1	ANKYRIN 1	Ankyrin 1, Ankyrin domain containing protein 1	ANKYRIN 1	ank1-1, ank1-2, ank1-3	2	belonging to the ANK-M subfamily (i.e. proteins with ANK domains only). O. rufipogon ORUFI02G17950. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Reproductive organ - Panicle, Mode of branching	Os02g0492000	LOC_Os02g29040.2, LOC_Os02g29040.1				GO:0048281 - inflorescence morphogenesis, GO:0010229 - inflorescence development, GO:0010077 - maintenance of inflorescence meristem identity	TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000371 - yield trait, TO:0000142 - secondary branching of inflorescence, TO:0000052 - primary branching of inflorescence, TO:0000050 - inflorescence branching, TO:0000621 - inflorescence development trait	PO:0025073 - branch , PO:0006327 - spikelet meristem , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence 
24040	ANK2	OsANK2, OsTPR047, TPR047, OsTPR47, TPR47	ANKYRIN 2	Ankyrin 2, Ankyrin domain containing protein 2, Tetratricopeptide repeat domain containing protein 47	ANKYRIN 2	ank2-1, ank2-2, ank2-3	2	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI02G18060. PO:0030123: panicle inflorescence.	 Reproductive organ - Panicle, Mode of branching,  Character as QTL - Yield and productivity,  Reproductive organ - panicle	Os02g0494400	LOC_Os02g29210.4, LOC_Os02g29210.3, LOC_Os02g29210.2, LOC_Os02g29210.1				GO:0010077 - maintenance of inflorescence meristem identity, GO:0010229 - inflorescence development, GO:0048281 - inflorescence morphogenesis	TO:0000371 - yield trait, TO:0000142 - secondary branching of inflorescence, TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait, TO:0000050 - inflorescence branching	PO:0006327 - spikelet meristem , PO:0025073 - branch , PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
24041	TPR45	OsTPR045, TPR045, OsTPR45	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 45	Tetratricopeptide repeat domain containing protein 45	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 45		2	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI02G18010. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching	Os02g0493300	LOC_Os02g29160.1				GO:0010077 - maintenance of inflorescence meristem identity, GO:0010229 - inflorescence development, GO:0048281 - inflorescence morphogenesis	TO:0000050 - inflorescence branching, TO:0000557 - secondary branch number, TO:0000142 - secondary branching of inflorescence, TO:0000371 - yield trait, TO:0000621 - inflorescence development trait	PO:0006327 - spikelet meristem , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0025073 - branch 
24042	TPR46	OsTPR046, TPR046, OsTPR46	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 46	Tetratricopeptide repeat domain containing protein 46	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 46		2	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI02G18040. PO:0030123: panicle inflorescence.	 Seed - Physiological traits - Longevity,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching,  Character as QTL - Grain quality	Os02g0494000	LOC_Os02g29190.1				GO:0010229 - inflorescence development, GO:0009408 - response to heat, GO:0009270 - response to humidity, GO:0048281 - inflorescence morphogenesis, GO:0010077 - maintenance of inflorescence meristem identity	TO:0000371 - yield trait, TO:0000259 - heat tolerance, TO:0010001 - percent germination, TO:0000250 - vigor related trait, TO:0000435 - seed longevity, TO:0000557 - secondary branch number, TO:0000050 - inflorescence branching, TO:0000621 - inflorescence development trait, TO:0000441 - humidity related trait, TO:0000142 - secondary branching of inflorescence, TO:0000345 - seed viability	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
24043	TPR42	OsTPR042, TPR042, OsTPR42	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 42	Tetratricopeptide repeat domain containing protein 42	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 42		2	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI02G18010.  PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle	Os02g0492900	LOC_Os02g29130.2, LOC_Os02g29130.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
24044	TPR43	OsTPR043, TPR043, OsTPR43	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 43	Tetratricopeptide repeat domain containing protein 43	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 43		2	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI02G18010.  PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - panicle	Os02g0493050	LOC_Os02g29140.1				GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
24045	TPR2	OsTPR002, TPR002, OsTPR2	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 2	Tetratricopeptide repeat domain containing protein 2	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 2		1	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI01G04820.  	 Biochemical character	Os01g0171100	LOC_Os01g07640.1				GO:0016409 - palmitoyltransferase activity, GO:0018345 - protein palmitoylation, GO:0000139 - Golgi membrane		
24046	TPR3	OsTPR003, TPR003, OsTPR3	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 3	Tetratricopeptide repeat domain containing protein 3	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 3		1	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI01G05130.  			LOC_Os01g07980.1						
24047	TPR90	OsTPR090, TPR090, OsTPR90	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 90	Tetratricopeptide repeat domain containing protein 90	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 90		3	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI03G27240.  		Os03g0621400	LOC_Os03g42350.1						
24048	TPR92	OsTPR092, TPR092, OsTPR92, PLS15, OsPLS15	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 92	Tetratricopeptide repeat domain containing protein 92, PLS-class Pentatricopeptide Repeat Protein 15, PLS-type PPR Protein 13	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 92		3	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI03G27450.  		Os03g0624800	LOC_Os03g42650.2, LOC_Os03g42650.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0009451 - RNA modification, GO:0003723 - RNA binding		
24049	TPR116	OsTPR116	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 116	Tetratricopeptide repeat domain containing protein 116	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 116		5	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI05G00250.  		Os05g0103600	LOC_Os05g01310.3, LOC_Os05g01310.2, LOC_Os05g01310.1						
24050	TPR161	OsTPR161	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 161	Tetratricopeptide repeat domain containing protein 161	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 161		8	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI08G07860.  		Os08g0233400	LOC_Os08g13640.1						
24051	TPR171	OsTPR171	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 171	Tetratricopeptide repeat domain containing protein 171	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 171		9	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI09G01110.  		Os09g0123500	LOC_Os09g03630.1						
24052	TPR172	OsTPR172	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 172	Tetratricopeptide repeat domain containing protein 172	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 172		9	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI09G01140.  		Os09g0124100/Os09g0124232	LOC_Os09g03680.1						
24053	TPR173	OsTPR173	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 173	Tetratricopeptide repeat domain containing protein 173	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 173		9	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI09G01190.  		Os09g0124800	LOC_Os09g03750.1						
24054	TPR211	OsTPR211	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 211	Tetratricopeptide repeat domain containing protein 211	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 211		12	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI12G19940.  		Os12g0599900	LOC_Os12g40770.1						
24055	TPR212	OsTPR212	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 212	Tetratricopeptide repeat domain containing protein 212	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 212		12	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI12G19950.  		Os12g0600100	LOC_Os12g40780.1						
24056	TPR215	OsTPR215	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 215	Tetratricopeptide repeat domain containing protein 215	TETRATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN 215		12	belonging to the ANK-TPR subfamily. O. rufipogon ORUFI12G22290.  		Os12g0636100	LOC_Os12g43940.1						
24057	_		_	Conserved hypothetical protein			9	Q6H612.		Os09g0382400	LOC_Os09g21460.1				GO:0042644 - chloroplast nucleoid, GO:0003677 - DNA binding, GO:0010468 - regulation of gene expression		PO:0009030 - carpel , PO:0009038 - palea , PO:0020103 - flag leaf , PO:0009029 - stamen , PO:0009037 - lemma 
24058	_		_	DUF295 protein			9	one of eight candidate genes in the qGZn9a (QTL for grain zinc concentration) region. GO:0120194: regulation of anther dehiscence. TO:0006053: zinc concentration.	 Reproductive organ - Pollination, fertilization, fertility	Os09g0384900	LOC_Os09g21660.1				GO:0048653 - anther development, GO:0009901 - anther dehiscence	TO:0000392 - sterility or fertility trait	PO:0009029 - stamen , PO:0009066 - anther , PO:0001004 - anther development stage 
24059	LHW	OsLHW	LONESOME HIGHWAY			lhw-4, lhw-5, lhw-6	2	TO:0001066: number of metaxylem vessels.  TO:0000985: root system morphology trait.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os02g0673500	LOC_Os02g45170.1				GO:0046983 - protein dimerization activity, GO:0003700 - transcription factor activity, GO:0090058 - metaxylem development, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000470 - vascular tissue related trait	PO:0020124 - root stele 
24060	SPARK1	OsSPARK1	SIMILAR PROTEIN TO ARK 1		SIMILAR PROTEIN TO ARK 1		7	GO:1904583: response to polyamine macromolecule.	 Biochemical character	Os07g0227300	LOC_Os07g12480.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
24061	SPARK2	OsSPARK2	SIMILAR PROTEIN TO ARK 2		SIMILAR PROTEIN TO ARK 2		4		 Biochemical character	Os04g0689400	LOC_Os04g59320.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		
24062	SPARK3	OsSPARK3	SIMILAR PROTEIN TO ARK 3		SIMILAR PROTEIN TO ARK 3		4		 Biochemical character	Os04g0430400	LOC_Os04g35114.1				GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
24063	SPARK4	OsSPARK4	SIMILAR PROTEIN TO ARK 4		SIMILAR PROTEIN TO ARK 4		5		 Biochemical character	Os05g0423500	LOC_Os05g34950.1				GO:0004672 - protein kinase activity, GO:0046777 - protein amino acid autophosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
24064	SPARK6	OsSPARK6	SIMILAR PROTEIN TO ARK 6		SIMILAR PROTEIN TO ARK 6		1		 Biochemical character	Os01g0384300	LOC_Os01g28730.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane		
24065	SPARK7	OsSPARK7	SIMILAR PROTEIN TO ARK 7		SIMILAR PROTEIN TO ARK 7		2	CT835423.		Os02g0710700	LOC_Os02g48094.1				GO:0016021 - integral to membrane		
24066	SPARK10	OsSPARK10	SIMILAR PROTEIN TO ARK 10		SIMILAR PROTEIN TO ARK 10		10			Os10g0534100	LOC_Os10g38980.3, LOC_Os10g38980.2, LOC_Os10g38980.1				GO:0005886 - plasma membrane		
24067	SPARK11	OsSPARK11	SIMILAR PROTEIN TO ARK 11		SIMILAR PROTEIN TO ARK 11		6			Os06g0497500	LOC_Os06g30210.1						
24068	SSIV3	SSIV-3, OsSSIV-3	SOLUBLE STARCH SYNTHASE IV3	SOLUBLE STARCH SYNTHASE IV-3, glycogen synthase 1	SOLUBLE STARCH SYNTHASE IV3		2		 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os02g0807100	LOC_Os02g56320.1				GO:0016021 - integral to membrane, GO:0009960 - endosperm development, GO:0019252 - starch biosynthetic process, GO:0009507 - chloroplast, GO:0016757 - transferase activity, transferring glycosyl groups		PO:0009089 - endosperm , PO:0007633 - endosperm development stage 
24069	SXI2	OsPALD, PALD, OsSXI2	SUPPRESSOR OF XA21- MEDIATED IMMUNITY-2	suppressor of XA21- mediated immunity-2, PALADIN	SUPPRESSOR OF XA21- MEDIATED IMMUNITY-2	sxi2	3		 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0586700	LOC_Os03g38970.1				GO:0042742 - defense response to bacterium, GO:0045087 - innate immune response, GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0004725 - protein tyrosine phosphatase activity	TO:0000175 - bacterial blight disease resistance	
24070	RPP30S	OsRpp30-S, OsRpp30-S	RNASE P PROTEIN SUBUNIT RPP30-SHORTER	OsRpp30-shorter, RNase P protein subunit Rpp30-shorter	RNASE P PROTEIN SUBUNIT RPP30-SHORTER		12	one of two paralogs of OsRpp30. GO:0090502: RNA phosphodiester bond hydrolysis, endonucleolytic.		Os12g0175900	LOC_Os12g07680.1				GO:0004540 - ribonuclease activity, GO:0005655 - nucleolar ribonuclease P complex, GO:0003723 - RNA binding, GO:0003824 - catalytic activity, GO:0008033 - tRNA processing		
24071	OGR	PHF5A1, OsPHF5A1, PHF5A, OsPHF5A, OsOGR	OVEREXPRESSION-PHF5A GEX1A RESISTANCE	Overexpression-PHF5A GEX1A Resistance, spliceosomal component PHF5A1, PHF5A GEX1A Resistance	SPLICEOSOMAL COMPONENT PHF5A1	OGR, PGR, PGR1, PGR2, PGR3, PGR4	4	a homolog of human PHF5A in rice.	 Tolerance and resistance - Stress tolerance	Os04g0663300	LOC_Os04g56760.1				GO:0009651 - response to salt stress, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0071011 - precatalytic spliceosome, GO:0005689 - U12-type spliceosomal complex, GO:0005686 - U2 snRNP, GO:0010188 - response to microbial phytotoxin, GO:0009635 - response to herbicide, GO:0043484 - regulation of RNA splicing	TO:0006001 - salt tolerance, TO:0000058 - herbicide sensitivity	
24072	PHF5A2	OsPHF5A2	SPLICEOSOMAL COMPONENT PHF5A2	spliceosomal component PHF5A2, OsPHF5A-Like	SPLICEOSOMAL COMPONENT PHF5A2		5	a homolog of human PHF5A in rice.		Os05g0367000	LOC_Os05g30410.1				GO:0071011 - precatalytic spliceosome, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005686 - U2 snRNP, GO:0005689 - U12-type spliceosomal complex		
24073	PAP90	OsPAP90	PSII AUXILIARY PROTEIN ~90 KDA	PSII auxiliary protein ~90 kDa	PSII AUXILIARY PROTEIN ~90 KDA	pap90	6	GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance - Stress tolerance	Os06g0352900	LOC_Os06g24540.1				GO:0009414 - response to water deprivation, GO:0015979 - photosynthesis, GO:0009658 - chloroplast organization, GO:0009646 - response to absence of light	TO:0002715 - chloroplast development trait, TO:0000316 - photosynthetic ability, TO:0000276 - drought tolerance, TO:0000460 - light intensity sensitivity, TO:0000605 - hydrogen peroxide content	
24074	ASL4	OsPRPS1, PRPS1, OsASL4	ALBINO SEEDLING LETHALITY 4	plastid 30S ribosomal protein S1, albino seedling lethality 4	PLASTID 30S RIBOSOMAL PROTEIN S1	asl4	3		 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os03g0315800	LOC_Os03g20100.1				GO:0009416 - response to light stimulus, GO:0048366 - leaf development, GO:0009579 - thylakoid, GO:0042793 - transcription from plastid promoter, GO:0015995 - chlorophyll biosynthetic process, GO:0016117 - carotenoid biosynthetic process, GO:0042254 - ribosome biogenesis, GO:0009507 - chloroplast, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0009658 - chloroplast organization, GO:0003676 - nucleic acid binding, GO:0003729 - mRNA binding, GO:0009570 - chloroplast stroma, GO:0022627 - cytosolic small ribosomal subunit	TO:0002715 - chloroplast development trait, TO:0000075 - light sensitivity, TO:0000326 - leaf color, TO:0000496 - carotenoid content, TO:0000495 - chlorophyll content, TO:0000655 - leaf development trait	PO:0020104 - leaf sheath , PO:0001050 - leaf development stage , PO:0025034 - leaf 
24075	ENL2	OsCTPS1, CTPS1	ENDOSPERMLESS 2	cytidine triphosphate synthase 1, endospermless 2	CYTIDINE TRIPHOSPHATE SYNTHASE 1	osctps1, enl2, enl2-1, enl2-2, enl2-3	1	GO:0044210: 'de novo' CTP biosynthetic process. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Biochemical character,  Vegetative organ - Root	Os01g0616900	LOC_Os01g43020.1				GO:0048487 - beta-tubulin binding, GO:0048364 - root development, GO:0043014 - alpha-tubulin binding, GO:0051785 - positive regulation of nuclear division, GO:0000226 - microtubule cytoskeleton organization, GO:0042802 - identical protein binding, GO:0008017 - microtubule binding, GO:0003883 - CTP synthase activity, GO:0005524 - ATP binding, GO:0010342 - cellularization of endosperm, GO:0015631 - tubulin binding, GO:0009960 - endosperm development, GO:0019856 - pyrimidine base biosynthetic process, GO:0006541 - glutamine metabolic process, GO:0006241 - CTP biosynthetic process, GO:0048316 - seed development	TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0000592 - 1000-dehulled grain weight, TO:0000396 - grain yield, TO:0000656 - root development trait, TO:0000620 - embryo development trait, TO:0002692 - root meristem development, TO:0000653 - seed development trait, TO:0000227 - root length, TO:0000397 - grain size, TO:0000181 - seed weight	PO:0020148 - shoot apical meristem , PO:0007631 - plant embryo stage , PO:0001170 - seed development stage , PO:0007520 - root development stage , PO:0009009 - plant embryo , PO:0025074 - embryo sac , PO:0007633 - endosperm development stage , PO:0009089 - endosperm , PO:0020020 - nucellus , PO:0009084 - pericarp , PO:0009049 - inflorescence 
24076	CTPS2	OsCTPS2	CYTIDINE TRIPHOSPHATE SYNTHASE 2	cytidine triphosphate synthase 2	CYTIDINE TRIPHOSPHATE SYNTHASE 2		1	GO:0044210: 'de novo' CTP biosynthetic process.	 Biochemical character	Os01g0654100	LOC_Os01g46570.3, LOC_Os01g46570.2, LOC_Os01g46570.1				GO:0006541 - glutamine metabolic process, GO:0005524 - ATP binding, GO:0003883 - CTP synthase activity, GO:0042802 - identical protein binding, GO:0006241 - CTP biosynthetic process, GO:0019856 - pyrimidine base biosynthetic process		
24077	CTPS3	OsCTPS3	CYTIDINE TRIPHOSPHATE SYNTHASE 3	cytidine triphosphate synthase 3	CYTIDINE TRIPHOSPHATE SYNTHASE 3		5	GO:0044210: 'de novo' CTP biosynthetic process.	 Biochemical character	Os05g0569700	LOC_Os05g49460.1				GO:0003883 - CTP synthase activity, GO:0005524 - ATP binding, GO:0019856 - pyrimidine base biosynthetic process, GO:0006541 - glutamine metabolic process, GO:0006241 - CTP biosynthetic process, GO:0042802 - identical protein binding		
24078	CTPS4	OsCTPS4	CYTIDINE TRIPHOSPHATE SYNTHASE 4	cytidine triphosphate synthase 4	CYTIDINE TRIPHOSPHATE SYNTHASE 4		5	GO:0044210: 'de novo' CTP biosynthetic process.	 Biochemical character	Os05g0570400	LOC_Os05g49520.1				GO:0003883 - CTP synthase activity, GO:0019856 - pyrimidine base biosynthetic process, GO:0005524 - ATP binding, GO:0042802 - identical protein binding, GO:0006241 - CTP biosynthetic process, GO:0006541 - glutamine metabolic process		
24079	CTPS5	OsCTPS5	CYTIDINE TRIPHOSPHATE SYNTHASE 5	cytidine triphosphate synthase 5	CYTIDINE TRIPHOSPHATE SYNTHASE 5		5	GO:0044210: 'de novo' CTP biosynthetic process.	 Biochemical character	Os05g0573300	LOC_Os05g49770.2, LOC_Os05g49770.1				GO:0042802 - identical protein binding, GO:0005524 - ATP binding, GO:0019856 - pyrimidine base biosynthetic process, GO:0006541 - glutamine metabolic process, GO:0006241 - CTP biosynthetic process, GO:0003883 - CTP synthase activity		
24080	CTPS6	OsCTPS6	CYTIDINE TRIPHOSPHATE SYNTHASE 6	cytidine triphosphate synthase 6	CYTIDINE TRIPHOSPHATE SYNTHASE 6		12	GO:0044210: 'de novo' CTP biosynthetic process.	 Biochemical character	Os12g0556600	LOC_Os12g36950.3, LOC_Os12g36950.1				GO:0005524 - ATP binding, GO:0003883 - CTP synthase activity, GO:0042802 - identical protein binding, GO:0006241 - CTP biosynthetic process, GO:0006541 - glutamine metabolic process, GO:0019856 - pyrimidine base biosynthetic process		
24081	NKT5	OsNKT5, OsKAT3, KAT3	_	Potassium channel protein NKT5, shaker potassium channel KAT3			6	Q652U9.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0254200	LOC_Os06g14310.1				GO:0005886 - plasma membrane, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0034765 - regulation of ion transmembrane transport, GO:0005249 - voltage-gated potassium channel activity	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system 
24082	_		_	Inwardly facing potassium channel			12		 Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0118400	LOC_Os12g02589.3, LOC_Os12g02589.2, LOC_Os12g02589.1				GO:0009941 - chloroplast envelope, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0005249 - voltage-gated potassium channel activity, GO:0016787 - hydrolase activity, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
24083	TPK1	OsTPK1	TWO PORE POTASSIUM CHANNEL C	Two pore potassium channel c	TWO PORE POTASSIUM CHANNEL C		9	Q69TN4. GO:0071805: potassium ion transmembrane transport.	 Biochemical character	Os09g0299400	LOC_Os09g12790.1				GO:0009705 - plant-type vacuole membrane, GO:0046872 - metal ion binding, GO:0022841 - potassium ion leak channel activity, GO:0030322 - stabilization of membrane potential, GO:0005887 - integral to plasma membrane		
24084	_		_	voltage-dependent potassium channel			4	Q7XT08.	 Biochemical character	Os04g0117500	LOC_Os04g02720.1				GO:0005267 - potassium channel activity, GO:0005244 - voltage-gated ion channel activity, GO:0034765 - regulation of ion transmembrane transport, GO:0016021 - integral to membrane		
24085	KAT4	OsKAT4	_	Potassium channel protein, shaker potassium channel KAT4			1	A2ZX97.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0718700	LOC_Os01g52070.1				GO:0034765 - regulation of ion transmembrane transport, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0005244 - voltage-gated ion channel activity, GO:0005886 - plasma membrane	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
24086	_	WAK3, OsWAK3	_				11	LOC_Os11g46890 is more likely to be the true candidate for Xa40, though the possibility that LOC_Os11g46900 might also contribute to resistance jointly with LOC_Os11g46890 could not be excluded (Zhang et al. 2021).		Os11g0691400/Os11g0691500	LOC_Os11g46900.1				GO:0005509 - calcium ion binding, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0030247 - polysaccharide binding, GO:0007166 - cell surface receptor linked signal transduction, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity		
24087	EXS	OsEXS, OsRLCK354, RLCK354	_	Xa26 homolog, leucine-rich-repeat receptor kinase EXS precursor			11	These results indicated that LOC_Os11g47240 is an important member of the Xa26 gene family cluster conferring BB resistance (Zhang et al. 2021). OsRLCK354 in Wang et al. 2024.	 Tolerance and resistance - Disease resistance	Os11g0695000	LOC_Os11g47240.2, LOC_Os11g47240.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24088	MIR396F	miR396f, osa-miR396f, OsmiR396f	MICRORNA396F	MICRORNA396f, osa-miRNA396f	_		2	miRBASE accession: MI0010563.	 Other						GO:0006379 - mRNA cleavage, GO:0035068 - micro-ribonucleoprotein complex, GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0035195 - gene silencing by miRNA, GO:0009733 - response to auxin stimulus, GO:0016442 - RNA-induced silencing complex	TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000166 - gibberellic acid sensitivity	
24089	HINGE3	OsHINGE3	HIGHLY INDUCED BY NITRATE GENE 6	Highly Induced by Nitrate Gene 6	HIGHLY INDUCED BY NITRATE PROTEIN 6		3	TO:0020098: nitrate sensitivity.	 Tolerance and resistance - Stress tolerance,  Other	Os03g0838800	LOC_Os03g62230.1				GO:0010167 - response to nitrate, GO:0010044 - response to aluminum ion, GO:0010447 - response to acidity		
24090	USP3	OsUSP3, OsUSP5, USP5	UNIVERSAL STRESS PROTEIN 3		UNIVERSAL STRESS PROTEIN 3		1	OsUSP5 in Liang et al. 2022.	 Tolerance and resistance - Stress tolerance	Os01g0511100	LOC_Os01g32780.1				GO:0009739 - response to gibberellin stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0046689 - response to mercury ion, GO:0010038 - response to metal ion, GO:0046686 - response to cadmium ion, GO:0009620 - response to fungus	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000034 - chromium sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance	PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009009 - plant embryo , PO:0009005 - root , PO:0025034 - leaf 
24091	CYP89A2	OsCYP89A2	CYTOCHROME P450 89A2	cytochrome P450 89A2	CYTOCHROME P450 89A2		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0515200	LOC_Os10g37110.1				GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion, GO:0046689 - response to mercury ion, GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity	TO:0000034 - chromium sensitivity	
24092	_		_				12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0278700	LOC_Os12g18110.3, LOC_Os12g18110.2, LOC_Os12g18110.1				GO:0016021 - integral to membrane, GO:0005774 - vacuolar membrane, GO:0010288 - response to lead ion, GO:0010038 - response to metal ion, GO:0046689 - response to mercury ion, GO:0015184 - L-cystine transmembrane transporter activity, GO:0015811 - L-cystine transport	TO:0000034 - chromium sensitivity	
24093	STP25	OsSTP14, STP14, OsSTP25	SUGAR TRANSPORT PROTEIN 25	Sugar Transport Protein 14, STP protein 25, monosaccharide transporter STP25	SUGAR TRANSPORT PROTEIN 25		9	OsSTP14 in Ren et al. 2020.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0322000	LOC_Os09g15330.2, LOC_Os09g15330.1				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0015293 - symporter activity, GO:0046686 - response to cadmium ion, GO:0010038 - response to metal ion, GO:0010288 - response to lead ion, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0016020 - membrane, GO:0015145 - monosaccharide transmembrane transporter activity	TO:0006001 - salt tolerance, TO:0000034 - chromium sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance	
24094	06CIRC02797	Os06circ02797	06 CIRCLE RNA 02797	06 circle RNA 02797, 06 circRNA 02797			6	Os06circ02797 is derived from intron of LOC_Os06g04610.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Character as QTL - Plant growth activity						GO:0009651 - response to salt stress	TO:0000357 - growth and development trait, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
24095	05CIRC02465	Os05circ02465	05 CIRCLE RNA 02465	05 circle RNA 02465, 05 circRNA 02465			5	Os05circ02465 is derived from intergenic region between LOC_Os05g04950 and LOC_Os5g04960. 	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
24096	02CIRC25329	Os02circ25329	02 CIRCLE RNA 25329	02 circle RNA 25329, 02 circRNA 25329			2	Os02circ25329 is derived from intron of LOC_Os02g50174.	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
24097	03CIRC00204	Os03circ00204	03 CIRCLE RNA 00204	03 circle RNA 00204, 03 circRNA 00204			3	Os03circ00204 is derived from intergenic region between LOC_Os03g01350 and LOC_Os03g01360. 	 Tolerance and resistance - Stress tolerance						GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage 
24098	AMY5A	OsAmy5A, Amy5A	ALPHA-AMYLASE 5A		ALPHA-AMYLASE 5A		4	CT836492. GO:0103025: alpha-amylase activity (releasing maltohexaose).		Os04g0403300	LOC_Os04g33040.1				GO:0004556 - alpha-amylase activity, GO:0005509 - calcium ion binding, GO:0005975 - carbohydrate metabolic process		
24099	_		_	NB-ARC domain containing protein			1			Os01g0777400	LOC_Os01g56969.1						
24100	_		_	CCHC-type zinc finger domain containing protein			8			Os08g0461600					GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding		
24101	_		_	tetratricopeptide-like helical domain protein			4			Os04g0437500	LOC_Os04g35690.1				GO:0016021 - integral to membrane		
24102	_	RPS11	_	ribosomal RPS11, RIBOSOMAL PROTEIN S11			7	CT833537.		Os07g0565100					GO:0003735 - structural constituent of ribosome, GO:0022627 - cytosolic small ribosomal subunit, GO:0006412 - translation		
24103	_	OsRING327, RING327	_	Zinc finger protein, RING-type E3 ubiquitin ligase 327				GO:0061630: ubiquitin protein ligase activity.		Os02g0681200	LOC_Os02g45710.1				GO:0016567 - protein ubiquitination		
24104	_	PR5-1	_	pathogenesis-related gene 5-1			12		 Tolerance and resistance	Os12g0629600	LOC_Os12g43410.1				GO:0005576 - extracellular region, GO:0006952 - defense response		
24105	_	CBSX8, OsCBSX8	_	CBS domain-containing protein			8	CBSX for proteins containing only a single CBS domain. CBSX8 in Tomar et al. 2022. O. barthii: OBART08G21410, O. brachyantha: OB08G28150, O. glaberrima: ORGLA08G0231800, O. rufipogon: ORUFI08G23880, O. punctata: OPUNC08G19500, O. nivara: ONIVA08G24390, O. meridionalis: OMERI02G01220, O. sativa indica: BGIOSGA026597, O. glumaepatula: OGLUM08G22650.	 Biochemical character	Os08g0529200	LOC_Os08g41740.1				GO:0019901 - protein kinase binding, GO:0020037 - heme binding, GO:0016208 - AMP binding, GO:0031588 - AMP-activated protein kinase complex, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0050790 - regulation of catalytic activity, GO:0006468 - protein amino acid phosphorylation, GO:0042149 - cellular response to glucose starvation, GO:0019887 - protein kinase regulator activity		
24106	_	CBSX10, OsCBSX10	_	CBS domain-containing protein, cystathionine beta-synthase X10			10	CBSX for proteins containing only a single CBS domain. CBSX10 in Tomar et al. 2022. O. barthii: OBART10G14660, O. brachyantha: OB10G21840, O. rufipogon: ORUFI10G15650, O. punctata: OPUNC10G13150, O. nivara: ONIVA10G16500, O. meridionalis: OMERI10G11390, O. sativa indica: BGIOSGA033216.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0499400	LOC_Os10g35630.2, LOC_Os10g35630.1				GO:0042594 - response to starvation, GO:0019901 - protein kinase binding, GO:0020037 - heme binding, GO:0005634 - nucleus, GO:0050790 - regulation of catalytic activity, GO:0005737 - cytoplasm, GO:0001666 - response to hypoxia, GO:0034059 - response to anoxia, GO:0031588 - AMP-activated protein kinase complex, GO:0006468 - protein amino acid phosphorylation, GO:0016208 - AMP binding, GO:0042149 - cellular response to glucose starvation, GO:0009970 - cellular response to sulfate starvation, GO:0019887 - protein kinase regulator activity	TO:0000015 - oxygen sensitivity, TO:0000007 - sulfur sensitivity	
24107	_		_	MAR binding protein, matrix attachment region binding protein			5			Os05g0180400	LOC_Os05g08790.1				GO:0016021 - integral to membrane		
24108	_		_	MAR binding protein, matrix attachment region binding protein			3			Os03g0607500	LOC_Os03g41080.1						
24109	_		_	MAR binding protein, matrix attachment region binding protein			1			Os01g0180300	LOC_Os01g08510.1						
24110	GDPD5	OsGDPD5	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 5	Glycerophosphoryl diester phosphodiesterase 5	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 5		3		 Biochemical character	Os03g0603600	LOC_Os03g40670.1				GO:0006071 - glycerol metabolic process, GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0006629 - lipid metabolic process		
24111	CXC2	OsCXC2	_	TSO1-like CXC 2			7		 Other,  Tolerance and resistance - Stress tolerance	Os07g0176200	LOC_Os07g07974.1				GO:0003700 - transcription factor activity, GO:0009266 - response to temperature stimulus, GO:0010378 - temperature compensation of the circadian clock, GO:0007623 - circadian rhythm, GO:0005634 - nucleus, GO:0007275 - multicellular organismal development	TO:0000432 - temperature response trait	
24112	ALPHA-KGDH	alpha-KGDH	ALPHA-KETOGLUTARATE DEHYDROGENASE	alpha-ketoglutarate dehydrogenase	ALPHA-KETOGLUTARATE DEHYDROGENASE		4		 Biochemical character	Os04g0390000	LOC_Os04g32020.1, LOC_Os04g32020.3, LOC_Os04g32020.2				GO:0006099 - tricarboxylic acid cycle, GO:0030976 - thiamin pyrophosphate binding, GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity, GO:0045252 - oxoglutarate dehydrogenase complex, GO:0005739 - mitochondrion		
24113	PBGLU	PBGlu, OsPBGlu	PERIPLASMIC BETA-GLUCOSIDASE	periplasmic beta-glucosidase	PERIPLASMIC BETA-GLUCOSIDASE		3	BGIOSGA013561 (indica).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0749100	LOC_Os03g53790.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005576 - extracellular region, GO:0005975 - carbohydrate metabolic process, GO:0009414 - response to water deprivation, GO:0008422 - beta-glucosidase activity, GO:0009251 - glucan catabolic process	TO:0000276 - drought tolerance	
24115	_		_	dehydrogenase-phosphopantetheinyl transferase			8	the most likely candidate gene for IL8.1 (QTL for internode length on chromosome 8) and a candidate for qSID8.1 (QTL for stem inner diameter on chromosome 8) . TO:0020083: stem diameter.	 Biochemical character,  Vegetative organ - Culm	Os08g0243100	LOC_Os08g14490.1				GO:0008897 - holo-[acyl-carrier-protein] synthase activity, GO:0005829 - cytosol, GO:0019878 - lysine biosynthetic process via aminoadipic acid, GO:0000287 - magnesium ion binding	TO:0000145 - internode length	
24116	_		_	ATPase			7	the most likely candidate gene for qSPAD7 (QTL for Soil, and plant analyzer development on chromosome 7).	 Biochemical character	Os07g0192000	LOC_Os07g09420.1				GO:0016887 - ATPase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
24117	LR21	Lr21, OsLr21	_	rust-resistance protein Lr21			11	the most likely candidate gene for qSPAD11.1 (QTL for Soil, and plant analyzer development on chromosome 11).		Os11g0682600	LOC_Os11g45620.1				GO:0016021 - integral to membrane		
24118	DAO	OsDAO	DIOXYGENASE FOR AUXIN OXIDATION	dioxygenase for auxin oxidation	DIOXYGENASE FOR AUXIN OXIDATION	dao	4	Q7XKU5. Gene Expression Omnibus (GEO) database (GSE41097). a putative 2OG-Fe (II) Dioxygenase (2-oxoglutarate-dependent-Fe (II) dioxygenase). GO:0061458: reproductive system development. TO:0020106: Indole-3-acetic acid content. TO:1000023: lemma morphology trait. TO:1000024: palea morphology trait. TO:1000022: anther morphology trait.	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility	Os04g0475600	LOC_Os04g39980.1				GO:0009901 - anther dehiscence, GO:0051213 - dioxygenase activity, GO:0009555 - pollen development, GO:0050302 - indole-3-acetaldehyde oxidase activity, GO:0010152 - pollen maturation, GO:0046872 - metal ion binding, GO:0009852 - auxin catabolic process, GO:0010252 - auxin homeostasis	TO:0000437 - male sterility, TO:0000391 - seed size, TO:0000345 - seed viability, TO:0000484 - seed shape, TO:0000421 - pollen fertility, TO:0000328 - sucrose content, TO:0000696 - starch content, TO:0002672 - auxin content	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
24119	CM2;2	OsCM2;2	CHORISMATE MUTASE 2;2	Chorismate mutase 2;2	CHORISMATE MUTASE 2;2		2		 Biochemical character	Os02g0180500	LOC_Os02g08410.2, LOC_Os02g08410.1				GO:0009073 - aromatic amino acid family biosynthetic process, GO:0046417 - chorismate metabolic process, GO:0004106 - chorismate mutase activity, GO:0008652 - cellular amino acid biosynthetic process, GO:0005737 - cytoplasm		
24120	TRFL2	OsTRFL2	TRF-LIKE 2	TRF-LIKE2	TRF-LIKE 2		3	an initiator-binding protein.	 Tolerance and resistance - Stress tolerance	Os03g0274300	LOC_Os03g16700.4, LOC_Os03g16700.3, LOC_Os03g16700.2, LOC_Os03g16700.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24121	HADL	OsHADL, OsHAD3, HAD3	HAD-LIKE	haloacid dehalogenase-like hydrolase, Haloacid dehalogenase-like hydrolase 3	HAD-LIKE		3	GO:2000280: regulation of root development. TO:0006060: leaf chlorosis.	 Biochemical character,  Vegetative organ - Root,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0273800	LOC_Os03g16670.1				GO:0006970 - response to osmotic stress, GO:0006979 - response to oxidative stress, GO:0016020 - membrane, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009408 - response to heat, GO:0042542 - response to hydrogen peroxide, GO:0030104 - water homeostasis, GO:0016787 - hydrolase activity, GO:0009409 - response to cold	TO:0000340 - total soluble sugar content, TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000656 - root development trait, TO:0002657 - oxidative stress, TO:0001016 - relative chlorophyll content, TO:0000605 - hydrogen peroxide content, TO:0000516 - relative root length, TO:0002662 - leaf rolling tolerance, TO:0000136 - relative water content, TO:0001034 - relative plant height, TO:0000303 - cold tolerance	PO:0009010 - seed , PO:0009047 - stem , PO:0020142 - stem internode , PO:0009066 - anther , PO:0006000 - caryopsis hull , PO:0025034 - leaf 
24122	2R_MYB84	OsMYB30, MYB30, Os2R_MYB84	R2R3-MYB TRANSCRIPTION FACTOR 84	MYB transcription factor 30, R2R3-MYB Transcription Factor 84	R2R3-MYB TRANSCRIPTION FACTOR 84	Osmyb30	9	GO:1900367: positive regulation of defense response to insect.	 Other,  Tolerance and resistance - Insect resistance	Os09g0431300	LOC_Os09g26170.1				GO:0043565 - sequence-specific DNA binding, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
24123	UGT75F2	OsIAGLU, IAGLU, OsUGT75F2, OsUGT75A, UGT75A	UDP-GLUCOSYLTRANSFERASE 75F2	Indole-3-acetate beta-glucosyltransferase, UDP-glucosyltransferase 75F2, UDP-glucosyltransferase 75A	 UDP-GLUCOSYLTRANSFERASE 75F2	osiaglu, osiaglu-1, osiaglu-2, osiaglu-3, Osugt75a	1	OsUGT75A in He et al. 2023. the causal gene of qCL11. TO:0020106: Indole-3-acetic acid content. TO:0000949: seedling growth and development trait. GO:2000022: regulation of jasmonic acid mediated signaling pathway.	 Biochemical character,  Character as QTL - Plant growth activity,  Character as QTL - Germination,  Seed - Physiological traits,  Tolerance and resistance - Stress tolerance	Os11g0446700	LOC_Os11g25990.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009413 - response to flooding, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0009845 - seed germination, GO:0005737 - cytoplasm, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0009738 - abscisic acid mediated signaling, GO:0070085 - glycosylation, GO:0034059 - response to anoxia, GO:0009739 - response to gibberellin stimulus, GO:0001666 - response to hypoxia	TO:0000615 - abscisic acid sensitivity, TO:0002668 - jasmonic acid content, TO:0000280 - seedling vigor, TO:0000227 - root length, TO:0000524 - submergence tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0002675 - gibberellic acid content, TO:0000166 - gibberellic acid sensitivity, TO:0000015 - oxygen sensitivity, TO:0000345 - seed viability, TO:0000430 - germination rate, TO:0002672 - auxin content, TO:0000250 - vigor related trait, TO:0002667 - abscisic acid content, TO:0000163 - auxin sensitivity, TO:0001007 - coleoptile length	PO:0007022 - seed imbibition stage , PO:0009010 - seed , PO:0007057 - 0 seed germination stage , PO:0009009 - plant embryo 
24124	PLB	OsPLB	PHOSPHOLIPASE B	phospholipase B	PHOSPHOLIPASE B		11		 Biochemical character,  Seed - Physiological traits - Dormancy,  Character as QTL - Germination	Os11g0655800	LOC_Os11g43510.1				GO:0046470 - phosphatidylcholine metabolic process, GO:0009845 - seed germination, GO:0010883 - regulation of lipid storage, GO:0006629 - lipid metabolic process	TO:0000604 - fat and essential oil content	PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
24125	_		_	the paralog of DMD1			4			Os04g0431000	LOC_Os04g35170.1						
24126	GONST1	OsGONST1	GOLGI-LOCALIZED NUCLEOTIDE SUGAR TRANSPORTER 1	Golgi-localized nucleotide sugar transporter 1	GOLGI-LOCALIZED NUCLEOTIDE SUGAR TRANSPORTER 1		8		 Biochemical character	Os08g0107400	LOC_Os08g01610.3				GO:0005458 - GDP-mannose transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0006952 - defense response, GO:0015297 - antiporter activity, GO:0005457 - GDP-fucose transmembrane transporter activity		
24127	G4	OsG4, BG4, OsBG4	BETA-1,3-GLUCANASE 4	beta-1, 3-glucanase 4	BETA-1,3-GLUCANASE 4		7		 Biochemical character,  Seed - Physiological traits	Os07g0633100	LOC_Os07g43940.2, LOC_Os07g43940.1				GO:0046658 - anchored to plasma membrane	TO:0000430 - germination rate	
24129	PIC1	OsPIC1	PERMEASE IN CHLOROPLASTS 1	permease in chloroplasts 1	PERMEASE IN CHLOROPLASTS 1		2	TO:0020089: iron content trait.	 Biochemical character	Os02g0187600	LOC_Os02g09470.1				GO:0055072 - iron ion homeostasis, GO:0016021 - integral to membrane		
24130	MYBR17	MYB, OsMYBR17	MYB-RELATED TRANSCRIPTION FACTOR 17	MYB transcription factor, MYB-related transcription factor 17	MYB-RELATED TRANSCRIPTION FACTOR 17		1	GO:1990641: response to iron ion starvation.	 Tolerance and resistance - Stress tolerance	Os01g0863300	LOC_Os01g64360.1				GO:0003677 - DNA binding, GO:0010039 - response to iron ion, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0001666 - response to hypoxia, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0009037 - lemma , PO:0009038 - palea , PO:0009066 - anther , PO:0009005 - root , PO:0009089 - endosperm 
24131	_	B3	_	B3 transcription factor			4	Q7XLP4.		Os04g0386900	LOC_Os04g31730.1				GO:0005634 - nucleus, GO:0003677 - DNA binding		
24132	_	OsCEP2, CEP2	_	C-terminally encoded peptide 2	_		1	OsCEP2 in Aggarwal et al. 2020. 		Os01g0306301	LOC_Os01g20010.1						
24133	_	OsCEP15, CEP15	_	C-terminally encoded peptide 15	_		11	OsCEP15 in Aggarwal et al. 2020. 			LOC_Os11g18470.1						
24134	POW1	OsPOW1, PANDA, OsPANDA, HPY1, OsHPY1, OsHARBI1-22, HARBI1-22	PUT ON WEIGHT 1	put on weight 1, PANICLE NUMBER AND GRAIN SIZE, high photosynthetic rate and yield 1, Harbinger Transposase Derived 1-22		pow1, panda, HPY-KO1, HPY-KO2	7	a Harbinger transposon-derived gene. GO:0061085: regulation of histone H3-K27 methylation. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity	Os07g0175100	LOC_Os07g07880.1				GO:0001558 - regulation of cell growth, GO:0051302 - regulation of cell division, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003682 - chromatin binding, GO:0046872 - metal ion binding, GO:0042127 - regulation of cell proliferation, GO:0004518 - nuclease activity, GO:0031936 - negative regulation of chromatin silencing, GO:0035098 - ESC/E(Z) complex, GO:0035102 - PRC1 complex, GO:0003677 - DNA binding, GO:0070734 - histone H3-K27 methylation, GO:0005634 - nucleus, GO:0040029 - regulation of gene expression, epigenetic	TO:0002637 - leaf size, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000316 - photosynthetic ability, TO:0000357 - growth and development trait, TO:0000206 - leaf angle, TO:0000072 - awn length, TO:0002681 - leaf curling, TO:0000339 - stem thickness	PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009039 - glume , PO:0025034 - leaf , PO:0009005 - root 
24135	MON1	OsMON1	MONENSIN SENSITIVITY 1	MONENSIN SENSITIVITY1			1	Q5JL08. GO:0099402: plant organ development.		Os01g0976000	LOC_Os01g74460.2, LOC_Os01g74460.1				GO:0006623 - protein targeting to vacuole, GO:0045324 - late endosome to vacuole transport, GO:0005085 - guanyl-nucleotide exchange factor activity, GO:0005768 - endosome, GO:0007033 - vacuole organization		
24136	CTB2	OsCTB2	COLD TOLERANCE AT BOOTING STAGE 2	cold tolerance at booting stage 2		CTB2-NIL1913, CTB2-Towada, ctb2	4	the candidate gene for qPP4 (protrusion percentage-associated QTL on chromosome 4). PO:0030123: panicle inflorescence. GO:0090559: regulation of membrane permeability.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os04g0131900	LOC_Os04g04254.2, LOC_Os04g04254.1				GO:0030259 - lipid glycosylation, GO:0016125 - sterol metabolic process, GO:0005975 - carbohydrate metabolic process, GO:0005634 - nucleus, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0008194 - UDP-glycosyltransferase activity, GO:0009409 - response to cold, GO:0016020 - membrane	TO:0000280 - seedling vigor, TO:0000430 - germination rate, TO:0000303 - cold tolerance, TO:0000421 - pollen fertility	PO:0025281 - pollen , PO:0025034 - leaf , PO:0020141 - stem node , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009071 - anther wall tapetum , PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009066 - anther , PO:0008013 - anther vascular system 
24137	PEP1	OsPEP1	PEPTIDE 1 		PEPTIDE 1 		11	GO:2000280: regulation of root development. root-secreted  five-amino-acid peptide SDFDR.	 Vegetative organ - Root	Os11g0201450	LOC_Os11g09560.1				GO:0051510 - regulation of unidimensional cell growth, GO:0051174 - regulation of phosphorus metabolic process, GO:0051171 - regulation of nitrogen compound metabolic process, GO:0080022 - primary root development, GO:0048364 - root development, GO:0045454 - cell redox homeostasis, GO:0070186 - growth hormone activity	TO:0000656 - root development trait, TO:0000227 - root length, TO:0002692 - root meristem development, TO:0000605 - hydrogen peroxide content, TO:0001012 - lateral root length	PO:0007520 - root development stage , PO:0000043 - crown root , PO:0020121 - lateral root , PO:0000025 - root tip , PO:0020123 - root cap , PO:0006085 - root meristem , PO:0009005 - root , PO:0020127 - primary root , PO:0009047 - stem , PO:0006036 - root epidermis 
24138	FAH	OsFAH	FUMARYLACETOACETATE HYDROLASE	Fumarylacetoacetate hydrolase	FUMARYLACETOACETATE HYDROLASE	osfah	2	Q6H7M1. GO:1902000: homogentisate catabolic process. PO:0030123: panicle inflorescence. GO:0009960: endosperm development.	 Reproductive organ - Pollination, fertilization, fertility - Sterility,  Biochemical character,  Seed - Morphological traits - Embryo,  Seed - Morphological traits - Endosperm	Os02g0196800	LOC_Os02g10310.3, LOC_Os02g10310.2, LOC_Os02g10310.1				GO:0006572 - tyrosine catabolic process, GO:0005829 - cytosol, GO:0008219 - cell death, GO:0004334 - fumarylacetoacetase activity, GO:0046872 - metal ion binding, GO:0006559 - L-phenylalanine catabolic process, GO:0009790 - embryonic development	TO:0000447 - filled grain number, TO:0000620 - embryo development trait, TO:0000231 - endospermless, TO:0000189 - embryoless, TO:0000485 - sterility related trait	PO:0007631 - plant embryo stage , PO:0009031 - sepal , PO:0025034 - leaf , PO:0009047 - stem , PO:0009073 - stigma , PO:0007633 - endosperm development stage , PO:0020122 - inflorescence axis , PO:0009046 - flower , PO:0020038 - petiole , PO:0020138 - leaf lamina vein , PO:0003011 - root vascular system , PO:0020100 - hypocotyl , PO:0020030 - cotyledon , PO:0009005 - root , PO:0009067 - filament , PO:0009049 - inflorescence 
24139	DICE2	OsDICE2, OsLKRT1, LKRT1	DEFECTIVE IN CELL ELONGATION 2	LYSINE KETOGLUTARATE REDUCTASE TRANS-SPLICING RELATED 1, defective in cell elongation 2		dice2	2	TO:0020103: adventitious root length.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os02g0297600	LOC_Os02g19510.3, LOC_Os02g19510.2, LOC_Os02g19510.1				GO:0005829 - cytosol, GO:0048364 - root development, GO:0016021 - integral to membrane, GO:0010449 - root meristem growth, GO:0009266 - response to temperature stimulus, GO:0009826 - unidimensional cell growth, GO:0008283 - cell proliferation	TO:0000586 - seminal root length, TO:0000432 - temperature response trait, TO:0000227 - root length, TO:0000576 - stem length, TO:0001012 - lateral root length, TO:0002692 - root meristem development, TO:0000605 - hydrogen peroxide content, TO:0000656 - root development trait, TO:0002673 - amino acid content	PO:0025181 - root elongation zone , PO:0009006 - shoot system , PO:0007520 - root development stage , PO:0000025 - root tip , PO:0009005 - root 
24140	LA2 	OsLA2	LAZY2	LAZY 2		la2, CR-la2-1	2	GO:0060918: auxin transport. GO:0070998: sensory perception of gravity. GO:2000904: regulation of starch metabolic process.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm	Os02g0180200	LOC_Os02g08380.1				GO:0005982 - starch metabolic process, GO:0010581 - regulation of starch biosynthetic process, GO:0003677 - DNA binding, GO:0009629 - response to gravity, GO:0009590 - detection of gravity, GO:0009507 - chloroplast, GO:0009630 - gravitropism	TO:0002672 - auxin content, TO:0002693 - gravity response trait, TO:0000567 - tiller angle, TO:0000696 - starch content, TO:0000427 - culm angle	
24141	PMT10	OsPMT10	PECTIN METHYLTRANSFERASE 10	Pectin Methyltransferase 10	PECTIN METHYLTRANSFERASE 10	ospmt10	10		 Reproductive organ - Pollination, fertilization, fertility	Os10g0477100	LOC_Os10g33720.3, LOC_Os10g33720.1				GO:0052546 - cell wall pectin metabolic process, GO:0005802 - trans-Golgi network, GO:0005737 - cytoplasm, GO:0016021 - integral to membrane, GO:0008168 - methyltransferase activity, GO:0009664 - plant-type cell wall organization, GO:0009827 - plant-type cell wall modification, GO:0005768 - endosome, GO:0009860 - pollen tube growth, GO:0032259 - methylation	TO:0000392 - sterility or fertility trait	PO:0009030 - carpel , PO:0025082 - reproductive shoot system 
24142	PSD	OsPSD	PAUSED				7	Q8H3A7. the rice ortholog of Arabidopsis PAUSED (PSD). GO:0071528: tRNA re-export from nucleus.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Plant growth activity	Os07g0613300	LOC_Os07g42180.1				GO:0005049 - nuclear export signal receptor activity, GO:0006409 - tRNA export from nucleus, GO:0000049 - tRNA binding, GO:0009908 - flower development, GO:0010014 - meristem initiation, GO:0008033 - tRNA processing, GO:0005829 - cytosol, GO:0016363 - nuclear matrix, GO:0005643 - nuclear pore, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0031267 - small GTPase binding	TO:0000017 - anatomy and morphology related trait, TO:0000357 - growth and development trait, TO:0000392 - sterility or fertility trait	PO:0009012 - plant structure development stage 
24143	PHY2	OsPHY2	PHYTASE 2	phytase 2	PHYTASE 2		3	GO:0052745: inositol phosphate phosphatase activity. TO:0020102: phosphate content.	 Biochemical character,  Character as QTL - Germination	Os03g0818100	LOC_Os03g60370.1				GO:0005886 - plasma membrane, GO:0009845 - seed germination, GO:0005774 - vacuolar membrane, GO:0005783 - endoplasmic reticulum, GO:0003993 - acid phosphatase activity		PO:0009010 - seed , PO:0007057 - 0 seed germination stage 
24144	EIF5A1	OseIF5A-1, eIF5A-1	EUKARYOTIC TRANSLATION INITIATION FACTOR 5A1	Eukaryotic translation initiation factor 5 A-1	EUKARYOTIC TRANSLATION INITIATION FACTOR 5A1		7	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os07g0597000	LOC_Os07g40580.1				GO:0003743 - translation initiation factor activity, GO:0010038 - response to metal ion, GO:0009651 - response to salt stress, GO:0043022 - ribosome binding, GO:0048366 - leaf development, GO:0042594 - response to starvation, GO:0003746 - translation elongation factor activity, GO:0009743 - response to carbohydrate stimulus, GO:0045901 - positive regulation of translational elongation, GO:0045905 - positive regulation of translational termination	TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000655 - leaf development trait, TO:0000480 - nutrient sensitivity	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0001050 - leaf development stage 
24145	OSM1	OsOSM1	OSMOTIN 1	osmotin 1	OSMOTIN 1		12	thaumatin. PO:0030123: panicle inflorescence. 	 Tolerance and resistance - Disease resistance,  Vegetative organ - Culm	Os12g0569500	LOC_Os12g38170.1				GO:0016020 - membrane, GO:0050832 - defense response to fungus, GO:0005576 - extracellular region, GO:0006952 - defense response, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009753 - response to jasmonic acid stimulus, GO:0005886 - plasma membrane	TO:0000255 - sheath blight disease resistance, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000172 - jasmonic acid sensitivity	PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
24146	OSM2	OsOSM2	OSMOTIN 2	osmotin 2	OSMOTIN 2		12	Thaumatin.	 Tolerance and resistance - Disease resistance	Os12g0569300	LOC_Os12g38150.1				GO:0006952 - defense response, GO:0005576 - extracellular region, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance	PO:0009047 - stem , PO:0009005 - root 
24147	ACC1 	OsACC1	ACETYL-COENZYME A CARBOXYLASE 1	acetyl-coenzyme A carboxylase 1, ACCase 1	ACETYL-COENZYME A CARBOXYLASE 1		5	B9FK36. GO:2001295: malonyl-CoA biosynthetic process.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0295300	LOC_Os05g22940.1				GO:0003989 - acetyl-CoA carboxylase activity, GO:0009635 - response to herbicide, GO:0005829 - cytosol, GO:0006633 - fatty acid biosynthetic process, GO:0046872 - metal ion binding, GO:0004075 - biotin carboxylase activity, GO:0005524 - ATP binding	TO:0000058 - herbicide sensitivity	
24148	IPMDH	OsIPMDH	3-ISOPROPYLMALATE DEHYDROGENASE	3-isopropylmalate dehydrogenase	3-ISOPROPYLMALATE DEHYDROGENASE		3	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os03g0655700	LOC_Os03g45320.2, LOC_Os03g45320.1				GO:0019761 - glucosinolate biosynthetic process, GO:0051287 - NAD or NADH binding, GO:0000287 - magnesium ion binding, GO:0003862 - 3-isopropylmalate dehydrogenase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0009098 - leucine biosynthetic process, GO:0009082 - branched chain family amino acid biosynthetic process		
24149	FEX	OsFEX	FLUORIDE EXPORTER	fluoride exporter	FLUORIDE EXPORTER		10	GO:1903425: fluoride transmembrane transporter activity. GO:1903424: fluoride transmembrane transport. GO:1902617: response to fluoride.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0567000	LOC_Os10g41749.5, LOC_Os10g41749.4, LOC_Os10g41749.3, LOC_Os10g41749.2, LOC_Os10g41749.1				GO:0016021 - integral to membrane, GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009725 - response to hormone stimulus, GO:0005886 - plasma membrane	TO:0000401 - plant growth hormone sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000480 - nutrient sensitivity, TO:0000038 - fluorine sensitivity, TO:0000615 - abscisic acid sensitivity	
24150	SNM1	OsSnm1	SENSITIVE TO NITROGEN MUSTARD 1				4	the rice homologue of the DNA repair gene Snm1. GO:0036297: interstrand cross-link repair. GO:0072702: response to methyl methanesulfonate.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0401800	LOC_Os04g32930.1				GO:0005634 - nucleus, GO:0006281 - DNA repair, GO:0042542 - response to hydrogen peroxide, GO:0006974 - response to DNA damage stimulus, GO:0031848 - protection from non-homologous end joining at telomere, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0003684 - damaged DNA binding, GO:0035312 - 5'-3' exodeoxyribonuclease activity		PO:0000003 - whole plant 
24151	NBL3	OsNBL3	NATURAL BLIGHT LEAF 3 	natural blight leaf 3		nbl3	3		 Tolerance and resistance - Lesion mimic,  Seed - Morphological traits,  Vegetative organ - Root,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Tolerance and resistance - Disease resistance	Os03g0159700	LOC_Os03g06370.2, LOC_Os03g06370.1				GO:0005739 - mitochondrion, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0050832 - defense response to fungus, GO:0010150 - leaf senescence, GO:0070265 - necrotic cell death, GO:0008219 - cell death, GO:0042742 - defense response to bacterium, GO:0009738 - abscisic acid mediated signaling, GO:0010230 - alternative respiration, GO:0009651 - response to salt stress, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0003729 - mRNA binding, GO:0000365 - nuclear mRNA trans splicing, via spliceosome, GO:0007005 - mitochondrion organization, GO:0009607 - response to biotic stimulus, GO:0009628 - response to abiotic stimulus, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0002667 - abscisic acid content, TO:0000063 - mimic response, TO:0002668 - jasmonic acid content, TO:0000442 - plant fresh weight, TO:0000168 - abiotic stress trait, TO:0000592 - 1000-dehulled grain weight, TO:0000605 - hydrogen peroxide content, TO:0000179 - biotic stress trait, TO:0000516 - relative root length, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000249 - leaf senescence, TO:0000326 - leaf color, TO:0006001 - salt tolerance	PO:0001054 - 4 leaf senescence stage 
24152	DRE2A	OsDRE2a	_				4	Q7XQ97. the ortholog of yeast Dre2 and human Anamorsin (or CIAPIN1, cytokine-induced apoptosis inducer 1). GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance	Os04g0674400	LOC_Os04g57810.3, LOC_Os04g57810.2, LOC_Os04g57810.1				GO:0010200 - response to chitin, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0005737 - cytoplasm, GO:0005758 - mitochondrial intermembrane space, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009055 - electron carrier activity, GO:0016226 - iron-sulfur cluster assembly, GO:0002238 - response to molecule of fungal origin, GO:0046872 - metal ion binding	TO:0000112 - disease resistance, TO:0000439 - fungal disease resistance	
24153	DRE2B	OsDRE2b	_				4	Q7XQ97. the homolog of yeast Dre2 and human Anamorsin (or CIAPIN1, cytokine-induced apoptosis inducer 1). GO:1903409: reactive oxygen species biosynthetic process.	 Tolerance and resistance - Disease resistance	Os04g0682050	LOC_Os04g58564.3, LOC_Os04g58564.2, LOC_Os04g58564.1				GO:0002238 - response to molecule of fungal origin, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0005758 - mitochondrial intermembrane space, GO:0016226 - iron-sulfur cluster assembly, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0009055 - electron carrier activity, GO:0046872 - metal ion binding, GO:0010200 - response to chitin	TO:0000112 - disease resistance, TO:0000439 - fungal disease resistance	
24154	RLP1	OsRLP1	LRR RECEPTOR-LIKE PROTEIN 1	LRR receptor-like protein 1	LRR RECEPTOR-LIKE PROTEIN 1	osrlp1	6	GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance	Os06g0140200	LOC_Os06g04830.1				GO:0009863 - salicylic acid mediated signaling pathway, GO:0006952 - defense response, GO:0051607 - defense response to virus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance	PO:0009047 - stem 
24155	BPH40	Bph40, OsBPH40	BROWN PLANTHOPPER RESISTANCE 40				4	MZ356338, MZ356339. NCBI accession number PRJNA735790.	 Tolerance and resistance - Insect resistance	Os04g0166000	LOC_Os04g08390.1				GO:0002213 - defense response to insect, GO:0009664 - plant-type cell wall organization	TO:0000424 - brown planthopper resistance	
24156	AP77	OsAP77	ASPARTIC PROTEASE 77	aspartic protease 77	ASPARTIC PROTEASE 77		10		 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0537800	LOC_Os10g39260.1				GO:0008233 - peptidase activity, GO:0005576 - extracellular region, GO:0009611 - response to wounding, GO:0042542 - response to hydrogen peroxide, GO:0051607 - defense response to virus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus	TO:0000148 - viral disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0000074 - blast disease	PO:0009015 - portion of vascular tissue , PO:0025034 - leaf 
24157	ALS3	OsALS3	ALBINO SEEDLING LETHALITY 3	albino seedling lethality3		asl3	1	GO:0090351: seedling development.	 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os01g0674700	LOC_Os01g48380.2, LOC_Os01g48380.1				GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0015979 - photosynthesis, GO:0003729 - mRNA binding, GO:0010239 - chloroplast mRNA processing, GO:0009793 - embryonic development ending in seed dormancy	TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content	PO:0005426 - chlorenchyma , PO:0025034 - leaf , PO:0009047 - stem , PO:0020103 - flag leaf 
24158	XIK1	OsXIK1	XOO-INDUCED KINASE 1	Xoo-induced kinase 1	XOO-INDUCED KINASE 1		2	GO:0140426: PAMP-triggered immunity signalling pathway. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance	Os02g0553000	LOC_Os02g34790.1				GO:0006955 - immune response, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0009755 - hormone-mediated signaling, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	PO:0025034 - leaf , PO:0009005 - root , PO:0009047 - stem , PO:0009049 - inflorescence 
24159	NRPE1	OsNRPE1, OsFEM3, FEM3	_	Five Elements Mountain 3			2	the largest subunit of RNA polymerase V (Pol V). GO:1901259: chloroplast rRNA processing. GO:0080188: gene silencing by RNA-directed DNA methylation. GO:0061458: reproductive system development.		Os02g0152700	LOC_Os02g05880.1				GO:0006306 - DNA methylation, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0030422 - production of siRNA involved in RNA interference, GO:0010426 - DNA methylation on cytosine within a CHH sequence		
24160	INVINH3	OsINVINH3, OS-INVINH3, OsPMEI19, PMEI19	INVERTASE INHIBITOR 3	invertase inhibitor 3, PME inhibitor 19, pectin methylesterase inhibitor 19	INVERTASE INHIBITOR 3		4	OsINVINH3 is co-orthologous with Os04g49730 and Os02g46360 to ZM-INVINH1.	 Biochemical character,  Seed - Morphological traits - Endosperm	Os04g0587100	LOC_Os04g49720.1				GO:0009960 - endosperm development, GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity, GO:0048316 - seed development	TO:0000653 - seed development trait	PO:0007633 - endosperm development stage , PO:0001170 - seed development stage , PO:0009089 - endosperm 
24161	LTPL32	OSLTPL32	LIPID TRANSFER PROTEIN-LIKE 32	Lipid transfer protein-like 32	LIPID TRANSFER PROTEIN-LIKE 32		11			Os11g0255200	LOC_Os11g14880.1						PO:0009010 - seed , PO:0001170 - seed development stage 
24162	INVINH1	OsINVINH1, OS-INVINH1, OsPMEI11, PMEI11	INVERTASE INHIBITOR 1	invertase inhibitor 1, PME inhibitor 11, pectin methylesterase inhibitor 11	INVERTASE INHIBITOR 1		2	co-orthologous to ZM-INVINH1.	 Biochemical character	Os02g0689000	LOC_Os02g46360.1				GO:0004857 - enzyme inhibitor activity		
24163	INVINH2	OsINVINH2, OS-INVINH2, OsPMEI20, PMEI20	INVERTASE INHIBITOR 2	invertase inhibitor 2, PME inhibitor 20, pectin methylesterase inhibitor 20	INVERTASE INHIBITOR 2		4	co-orthologous to ZM-INVINH1.	 Biochemical character	Os04g0587200	LOC_Os04g49730.1				GO:0030599 - pectinesterase activity, GO:0046910 - pectinesterase inhibitor activity, GO:0004857 - enzyme inhibitor activity		
24164	PMEI10	INVINH/PMEI, OsPMEI10	PECTIN METHYLESTERASE INHIBITOR 10	Invertase inhibitor/pectin methylesterase inhibitor (INVINH/PMEI) homolog, PME inhibitor 10, pectin methylesterase inhibitor 10	PECTIN METHYLESTERASE INHIBITOR 10		2		 Biochemical character	Os02g0688200	LOC_Os02g46290.1				GO:0043086 - negative regulation of catalytic activity, GO:0016021 - integral to membrane, GO:0048316 - seed development, GO:0004857 - enzyme inhibitor activity		PO:0009089 - endosperm , PO:0009010 - seed , PO:0001170 - seed development stage 
24165	PMEI31	INVINH/PMEI, OsPMEI31	PECTIN METHYLESTERASE INHIBITOR 31	Invertase inhibitor/pectin methylesterase inhibitor (INVINH/PMEI) homolog, PME inhibitor 31, pectin methylesterase inhibitor 31	PECTIN METHYLESTERASE INHIBITOR 31		8		 Biochemical character	Os08g0541800	LOC_Os08g42890.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity, GO:0048316 - seed development		PO:0009089 - endosperm , PO:0001170 - seed development stage , PO:0009010 - seed 
24166	_	INVINH/PMEI	_	Invertase inhibitor/pectin methylesterase inhibitor (INVINH/PMEI) homolog			8		 Biochemical character	Os08g0142100	LOC_Os08g04670.1				GO:0048316 - seed development		PO:0009010 - seed , PO:0001170 - seed development stage , PO:0009089 - endosperm 
24167	_	INVINH/PMEI	_	Invertase inhibitor/pectin methylesterase inhibitor (INVINH/PMEI) homolog			8		 Biochemical character	Os08g0142500	LOC_Os08g04710.1				GO:0004857 - enzyme inhibitor activity, GO:0048316 - seed development		PO:0009010 - seed , PO:0009089 - endosperm , PO:0001170 - seed development stage 
24168	_	INVINH/PMEI	_	Invertase inhibitor/pectin methylesterase inhibitor (INVINH/PMEI) homolog			8		 Biochemical character	Os08g0142900	LOC_Os08g04740.1				GO:0048316 - seed development		PO:0009089 - endosperm , PO:0001170 - seed development stage , PO:0009010 - seed 
24169	HDR3	OsHDR3	HOMOLOG OF DA1 ON RICE CHROMOSOME 3 	ubiquitin-interacting motif-type ubiquitin receptor HDR3, homolog of DA1 on rice chromosome 3	HOMOLOG OF DA1 ON RICE CHROMOSOME 3 	hdr3, hdr3-1, hdr3-2	3	PO:0030123: panicle inflorescence. GO:2000059: negative regulation of ubiquitin-dependent protein catabolic process. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os03g0267800	LOC_Os03g16090.2, LOC_Os03g16090.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0008284 - positive regulation of cell proliferation, GO:0042127 - regulation of cell proliferation, GO:0043130 - ubiquitin binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0010229 - inflorescence development, GO:0042177 - negative regulation of protein catabolic process, GO:0046872 - metal ion binding	TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000621 - inflorescence development trait, TO:0000734 - grain length	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
24170	ESV1	OsESV1, LSD2, OsLSD2	EARLY STARVATION 1	leaf starch deficiency 2		esv1, osESV1-1, osESV1-2, osesv1, osesv1-1, osesv1-2	3	the rice ortholog of AtESV1. GO:2001070: starch binding. GO:2000904: regulation of starch metabolic process. GO:0062052: starch granule initiation. GO:0090549: response to carbon starvation. TO:0001069: cooking quality trait.	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Character as QTL - Grain quality,  Vegetative organ - Culm,  Seed - Morphological traits - Endosperm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os03g0133300	LOC_Os03g04100.2, LOC_Os03g04100.1				GO:0009570 - chloroplast stroma, GO:0009959 - negative gravitropism, GO:0019252 - starch biosynthetic process, GO:0009590 - detection of gravity, GO:0051644 - plastid localization, GO:0005982 - starch metabolic process, GO:0007623 - circadian rhythm, GO:0042594 - response to starvation, GO:0009507 - chloroplast, GO:0010581 - regulation of starch biosynthetic process, GO:0009630 - gravitropism, GO:0043036 - starch grain	TO:0000328 - sucrose content, TO:0000696 - starch content, TO:0002693 - gravity response trait, TO:0000162 - seed quality, TO:0000396 - grain yield, TO:0000001 - carbon sensitivity, TO:0000196 - amylose content, TO:0000346 - tiller number, TO:0001015 - photosynthetic rate, TO:0000291 - carbohydrate content, TO:0000104 - floury endosperm, TO:0000100 - shrunken endosperm, TO:0000399 - grain thickness, TO:0000382 - 1000-seed weight, TO:0000449 - grain yield per plant, TO:0002656 - starch grain shape, TO:0000598 - protein content, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000462 - gelatinization temperature, TO:0000567 - tiller angle, TO:0002658 - starch grain synthesis	PO:0025034 - leaf 
24171	SAT1;2	OsSAT1;2	SERINE ACETYLTRANSFERASE 1;2	serine acetyltransferase 1;2	SERINE ACETYLTRANSFERASE 1;2		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0202700	LOC_Os02g10830.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0025034 - leaf 
24172	SAT2;2	OsSAT2;2	SERINE ACETYLTRANSFERASE 2;2	serine acetyltransferase 2;2	SERINE ACETYLTRANSFERASE 2;2		3	Q10QH1.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0196600	LOC_Os03g10050.1				GO:0006535 - cysteine biosynthetic process from serine, GO:0005829 - cytosol, GO:0009001 - serine O-acetyltransferase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0042594 - response to starvation, GO:0009970 - cellular response to sulfate starvation	TO:0000007 - sulfur sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
24173	OCPI1	OsCPI1, CPI1	O. SATIVA CHYMOTRYPSIN INHIBITOR-LIKE 1	Oryza sativa chymotrypsin inhibitor-like 1, CHYMOTRYPSIN INHIBITOR-LIKE 1	O. SATIVA CHYMOTRYPSIN INHIBITOR-LIKE 1		1	CT834839.	 Tolerance and resistance - Stress tolerance	Os01g0615050					GO:0004867 - serine-type endopeptidase inhibitor activity, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009737 - response to abscisic acid stimulus, GO:0009611 - response to wounding	TO:0000153 - relative yield, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
24174	GW10	OsGW10	GRAIN WIDTH 10	Grain Width gene on chromosome 10		gw10	10	a P450 Subfamily protein. TO:0000975: grain width.	 Biochemical character,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os10g0515400	LOC_Os10g37120.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009742 - brassinosteroid mediated signaling	TO:0000734 - grain length, TO:0000124 - flag leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000397 - grain size, TO:0002759 - grain number, TO:0000447 - filled grain number	
24175	EDM2L	OsEDM2L	ENHANCED DOWNY MILDEW 2-LIKE		ENHANCED DOWNY MILDEW 2-LIKE	osedm2l	8	BioProject (PRJNA689227), BioProject (PRJNA689253).	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0502000	LOC_Os08g39250.1				GO:0006378 - mRNA polyadenylation, GO:0005634 - nucleus, GO:0010608 - posttranscriptional regulation of gene expression, GO:0051321 - meiotic cell cycle, GO:0048653 - anther development, GO:0009556 - microsporogenesis, GO:0009555 - pollen development, GO:0016556 - mRNA modification, GO:0000380 - alternative nuclear mRNA splicing, via spliceosome, GO:0043067 - regulation of programmed cell death	TO:0000437 - male sterility, TO:0000531 - anther length, TO:0000214 - anther shape	PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0009071 - anther wall tapetum , PO:0009066 - anther , PO:0001007 - pollen development stage , PO:0001004 - anther development stage 
24176	_		_	EDM2-like protein, EDM2 family protein			1			Os01g0510500	LOC_Os01g32720.1						
24177	_		_	EDM2-like protein, EDM2 family protein			8			Os08g0337300	LOC_Os08g24946.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding		
24178	END-OS	Endo-Os	ENDO-BETA-N-ACETYLGLUCOSAMINIDASE	Endo-beta-N-Acetylglucosaminidase, endo-beta-GlcNAcase	ENDO-BETA-N-ACETYLGLUCOSAMINIDASE		5		 Biochemical character	Os05g0346500	LOC_Os05g27960.1				GO:0008152 - metabolic process, GO:0033925 - mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0006517 - protein deglycosylation, GO:0005829 - cytosol		
24179	GEBP1	OsGeBP1, GeBP1	GLABROUS1 ENHANCER-BINDING PROTEIN 1	GLABROUS1 Enhancer-Binding Protein 1	GLABROUS1 ENHANCER-BINDING PROTEIN 1		1	PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Tolerance and resistance - Stress tolerance	Os01g0249900	LOC_Os01g14720.1				GO:0010229 - inflorescence development, GO:0010043 - response to zinc ion, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0048653 - anther development, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion	TO:0000166 - gibberellic acid sensitivity, TO:0000021 - copper sensitivity, TO:0000621 - inflorescence development trait, TO:0000351 - zinc sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	PO:0001083 - inflorescence development stage , PO:0025034 - leaf , PO:0009037 - lemma , PO:0009038 - palea , PO:0001004 - anther development stage , PO:0009049 - inflorescence , PO:0009051 - spikelet , PO:0009066 - anther , PO:0000003 - whole plant 
24180	GEBP2	OsGeBP2, GeBP2	GLABROUS1 ENHANCER-BINDING PROTEIN 2	GLABROUS1 Enhancer-Binding Protein 2	GLABROUS1 ENHANCER-BINDING PROTEIN 2		1		 Tolerance and resistance - Stress tolerance	Os01g0512400	LOC_Os01g32890.1				GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0009735 - response to cytokinin stimulus	TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000021 - copper sensitivity	PO:0009038 - palea , PO:0009037 - lemma , PO:0025034 - leaf , PO:0000003 - whole plant 
24181	GEBP4	OsGeBP4, GeBP4	GLABROUS1 ENHANCER-BINDING PROTEIN 4	GLABROUS1 Enhancer-Binding Protein 4	GLABROUS1 ENHANCER-BINDING PROTEIN 4		2	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os02g0768700	LOC_Os02g52950.1				GO:0005634 - nucleus, GO:0009735 - response to cytokinin stimulus, GO:0046686 - response to cadmium ion, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000167 - cytokinin sensitivity	PO:0009051 - spikelet , PO:0009038 - palea , PO:0000003 - whole plant , PO:0025034 - leaf , PO:0009037 - lemma , PO:0009049 - inflorescence 
24182	GEBP5	OsGeBP5, GeBP5	GLABROUS1 ENHANCER-BINDING PROTEIN 5	GLABROUS1 Enhancer-Binding Protein 5	GLABROUS1 ENHANCER-BINDING PROTEIN 5		2			Os02g0771200	LOC_Os02g53150.1				GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009739 - response to gibberellin stimulus	TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0009038 - palea , PO:0009037 - lemma , PO:0000003 - whole plant , PO:0025034 - leaf 
24183	GEBP6	OsGeBP6, GeBP6	GLABROUS1 ENHANCER-BINDING PROTEIN 6	GLABROUS1 Enhancer-Binding Protein 6	GLABROUS1 ENHANCER-BINDING PROTEIN 6		3		 Other	Os03g0370250	LOC_Os03g25430.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009037 - lemma , PO:0009038 - palea , PO:0025034 - leaf , PO:0000003 - whole plant 
24184	GEBP8	OsGeBP8, GeBP8	GLABROUS1 ENHANCER-BINDING PROTEIN 8	GLABROUS1 Enhancer-Binding Protein 8	GLABROUS1 ENHANCER-BINDING PROTEIN 8		6		 Tolerance and resistance - Stress tolerance	Os06g0209500	LOC_Os06g10710.1				GO:0010043 - response to zinc ion, GO:0009735 - response to cytokinin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000351 - zinc sensitivity	PO:0009037 - lemma , PO:0000003 - whole plant , PO:0025034 - leaf , PO:0009038 - palea 
24185	GEBP9	OsGeBP9, GeBP9	GLABROUS1 ENHANCER-BINDING PROTEIN 9	GLABROUS1 Enhancer-Binding Protein 9	GLABROUS1 ENHANCER-BINDING PROTEIN 9		7		 Other	Os07g0636100	LOC_Os07g44200.1				GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	PO:0025034 - leaf , PO:0009037 - lemma , PO:0009038 - palea , PO:0000003 - whole plant 
24186	GEBP10	OsGeBP10, GeBP10	GLABROUS1 ENHANCER-BINDING PROTEIN 10	GLABROUS1 Enhancer-Binding Protein 10	GLABROUS1 ENHANCER-BINDING PROTEIN 10		8		 Other	Os08g0467600	LOC_Os08g36450.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity	PO:0000003 - whole plant , PO:0009038 - palea , PO:0009037 - lemma , PO:0025034 - leaf 
24187	GEBP13	OsGeBP13, GeBP13	GLABROUS1 ENHANCER-BINDING PROTEIN 13	GLABROUS1 Enhancer-Binding Protein 13	GLABROUS1 ENHANCER-BINDING PROTEIN 13		9		 Other	Os09g0451700	LOC_Os09g27850.1				GO:0009735 - response to cytokinin stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000167 - cytokinin sensitivity	PO:0025034 - leaf , PO:0009037 - lemma , PO:0000003 - whole plant , PO:0009038 - palea 
24188	GEBP11	OsGeBP11, GeBP11	GLABROUS1 ENHANCER-BINDING PROTEIN 11	GLABROUS1 Enhancer-Binding Protein 11	GLABROUS1 ENHANCER-BINDING PROTEIN 11		9		 Other,  Tolerance and resistance - Stress tolerance	Os09g0100800	LOC_Os09g01140.1				GO:0046686 - response to cadmium ion, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046688 - response to copper ion, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus	TO:0000021 - copper sensitivity, TO:0000163 - auxin sensitivity	PO:0000003 - whole plant , PO:0009038 - palea , PO:0009037 - lemma , PO:0025034 - leaf 
24189	GEBP12	OsGeBP12, GeBP12	GLABROUS1 ENHANCER-BINDING PROTEIN 12	GLABROUS1 Enhancer-Binding Protein 12	GLABROUS1 ENHANCER-BINDING PROTEIN 12		9	PO:0030123: panicle inflorescence.	 Other,  Tolerance and resistance - Stress tolerance	Os09g0102300	LOC_Os09g01470.1				GO:0046686 - response to cadmium ion, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0005634 - nucleus	TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0000003 - whole plant , PO:0009049 - inflorescence , PO:0009038 - palea , PO:0009037 - lemma , PO:0025034 - leaf , PO:0009051 - spikelet 
24190	V14	OsV14	VIRESCENT 14	virescent-14		v14	7	Plant mitochondrial transcription termination factor (mTERF) family member. GO:1904821: chloroplast disassembly. TO:0006060: leaf chlorosis.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os07g0583200	LOC_Os07g39430.1				GO:0006353 - transcription termination, GO:0009266 - response to temperature stimulus, GO:0015979 - photosynthesis, GO:0003690 - double-stranded DNA binding, GO:0032502 - developmental process, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0010343 - singlet oxygen-mediated programmed cell death, GO:0048367 - shoot development, GO:0048364 - root development, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009416 - response to light stimulus	TO:0002715 - chloroplast development trait, TO:0000432 - temperature response trait, TO:0000316 - photosynthetic ability, TO:0000326 - leaf color, TO:0000075 - light sensitivity	PO:0025034 - leaf 
24191	_		_	MTERF2 homolog, mitochondrial transcription termination factor 2 homolog			7	a mitochondrial transcription termination factor (mTERF) homolog.	 Tolerance and resistance - Stress tolerance	Os07g0134700	LOC_Os07g04230.1				GO:0032502 - developmental process, GO:0006353 - transcription termination, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003690 - double-stranded DNA binding, GO:0009507 - chloroplast, GO:0009506 - plasmodesma, GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0025034 - leaf 
24192	_		_	MTERF5 homolog, mitochondrial transcription termination factor 5 homolog			2	a mitochondrial transcription termination factor (mTERF) homolog. GO:1990837: sequence-specific double-stranded DNA binding.	 Tolerance and resistance - Stress tolerance	Os02g0602400	LOC_Os02g39040.1				GO:0032502 - developmental process, GO:0042793 - transcription from plastid promoter, GO:0009658 - chloroplast organization, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009507 - chloroplast, GO:0009408 - response to heat, GO:0006353 - transcription termination	TO:0000259 - heat tolerance	PO:0025034 - leaf 
24193	_		_	mTERF-like protein, mitochondrial transcription termination factor-like protein			8	a mitochondrial transcription termination factor (mTERF) homolog.	 Tolerance and resistance - Stress tolerance	Os08g0528700	LOC_Os08g41690.1				GO:0009507 - chloroplast, GO:0006353 - transcription termination, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009658 - chloroplast organization, GO:0032502 - developmental process, GO:0003690 - double-stranded DNA binding, GO:0009408 - response to heat	TO:0000259 - heat tolerance	PO:0025034 - leaf 
24194	RGN1	OsRGN1, Os2R_MYB10, 2R_MYB10	REGULATOR OF GRAIN NUMBER 1	REGULATOR OF GRAIN NUMBER1, R2R3-MYB Transcription Factor 10	REGULATOR OF GRAIN NUMBER 1	rgn1, rgn1-1, rgn1-2, rgn1-D, RGN1C, RGN1BS208, RGN1G	1	a homolog of RAX in Arabidopsis. TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching,  Seed - Morphological traits - Grain shape	Os01g0685400	LOC_Os01g49160.1				GO:0009690 - cytokinin metabolic process, GO:0006355 - regulation of transcription, DNA-dependent, GO:0010229 - inflorescence development, GO:0005634 - nucleus	TO:0000557 - secondary branch number, TO:0002759 - grain number, TO:0000621 - inflorescence development trait, TO:0000040 - panicle length, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000449 - grain yield per plant, TO:0002660 - cytokinin content	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009047 - stem 
24195	SDF2-2	OsSDF2-2	STROMAL CELL-DERIVED FACTOR 2-2	Stromal cell-derived factor 2-2	STROMAL CELL-DERIVED FACTOR 2-2		8	GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance	Os08g0440500	LOC_Os08g34190.1				GO:0042742 - defense response to bacterium, GO:0045088 - regulation of innate immune response, GO:0002376 - immune system process	TO:0000175 - bacterial blight disease resistance	
24196	UGT74J1	OsUGT74J1	UDP-GLUCOSYLTRANSFERASE 74J1	UDP-glucosyltransferase 74J1	UDP-GLUCOSYLTRANSFERASE 74J1	ugt74j1	4		 Biochemical character,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance	Os04g0206700	LOC_Os04g12980.1				GO:0009696 - salicylic acid metabolic process, GO:0050832 - defense response to fungus, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008194 - UDP-glycosyltransferase activity	TO:0000135 - leaf length, TO:0000476 - growth hormone content, TO:0000137 - days to heading, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0002689 - leaf sheath length	PO:0025034 - leaf , PO:0000003 - whole plant 
24197	UGT74J13	OsUGT74J13	UDP-GLUCOSYLTRANSFERASE 74J13	UDP-glucosyltransferase 74J13	UDP-GLUCOSYLTRANSFERASE 74J13		4		 Biochemical character	Os04g0204100	LOC_Os04g12720.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008194 - UDP-glycosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		PO:0009082 - spikelet floret , PO:0009037 - lemma , PO:0009072 - plant ovary , PO:0009005 - root , PO:0009038 - palea 
24198	UGT74J14	OsUGT74J14	UDP-GLUCOSYLTRANSFERASE 74J14	UDP-glucosyltransferase 74J14	UDP-GLUCOSYLTRANSFERASE 74J14		4		 Biochemical character	Os04g0206000	LOC_Os04g12890.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		PO:0009037 - lemma , PO:0009072 - plant ovary , PO:0009082 - spikelet floret , PO:0009005 - root , PO:0009038 - palea 
24199	UGT74J2	OsUGT74J2	UDP-GLUCOSYLTRANSFERASE 74J2	UDP-glucosyltransferase 74J2	UDP-GLUCOSYLTRANSFERASE 74J2		4		 Biochemical character	Os04g0206450	LOC_Os04g12950.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		PO:0009072 - plant ovary , PO:0009082 - spikelet floret , PO:0009005 - root , PO:0009037 - lemma , PO:0009038 - palea 
24200	UGT74H1	OsUGT74H1	UDP-GLUCOSYLTRANSFERASE 74H1	UDP-glucosyltransferase 74H1	UDP-GLUCOSYLTRANSFERASE 74H1		9		 Biochemical character	Os09g0517900	LOC_Os09g34214.1				GO:0008194 - UDP-glycosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity		PO:0009037 - lemma , PO:0009038 - palea , PO:0025034 - leaf , PO:0009082 - spikelet floret , PO:0009072 - plant ovary 
24201	_	OsUGT74H4, UGT74H4	_	UDP-glucosyltransferase 74H4			9		 Biochemical character	Os09g0518400	LOC_Os09g34270.1				GO:0008194 - UDP-glycosyltransferase activity		PO:0009072 - plant ovary , PO:0009038 - palea , PO:0009082 - spikelet floret , PO:0025034 - leaf , PO:0009037 - lemma 
24202	UGT74J3	OsUGT74J3	UDP-GLUCOSYLTRANSFERASE 74J3	UDP-glucosyltransferase 74J3	UDP-GLUCOSYLTRANSFERASE 74J3		4		 Biochemical character	Os04g0206500	LOC_Os04g12960.1				GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008194 - UDP-glycosyltransferase activity		PO:0009072 - plant ovary , PO:0009005 - root , PO:0009038 - palea , PO:0009037 - lemma , PO:0009082 - spikelet floret 
24203	UGT75G1	OsUGT75G1	UDP-GLUCOSYLTRANSFERASE 75G1	UDP-glucosyltransferase 75G1	UDP-GLUCOSYLTRANSFERASE 75G1		6		 Biochemical character	Os06g0593200	LOC_Os06g39270.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008194 - UDP-glycosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
24204	UGT75J1	OsUGT75J1	UDP-GLUCOSYLTRANSFERASE 75J1	UDP-glucosyltransferase 75J1	UDP-GLUCOSYLTRANSFERASE 75J1		2		 Biochemical character	Os02g0203300	LOC_Os02g10880.1				GO:0008194 - UDP-glycosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
24205	UGT75K2	OsUGT75K2	UDP-GLUCOSYLTRANSFERASE 75K2	UDP-glucosyltransferase 75K2	UDP-GLUCOSYLTRANSFERASE 75K2		5		 Biochemical character	Os05g0179950	LOC_Os05g08750.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
24206	UGT84E1	OsUGT84E1	UDP-GLUCOSYLTRANSFERASE 84E1	UDP-glucosyltransferase 84E1	UDP-GLUCOSYLTRANSFERASE 84E1		1		 Biochemical character	Os01g0686200	LOC_Os01g49230.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0008194 - UDP-glycosyltransferase activity		
24207	UGT84E2	OsUGT84E2	UDP-GLUCOSYLTRANSFERASE 84E2	UDP-glucosyltransferase 84E2	UDP-GLUCOSYLTRANSFERASE 84E2		1		 Biochemical character	Os01g0686300	LOC_Os01g49240.1				GO:0080043 - quercetin 3-O-glucosyltransferase activity, GO:0008194 - UDP-glycosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity		
24208	SCR8	OsSCR8	SHORT CROWN ROOT 8	Short Crown Root 8		scr8	8	GO:0080186: developmental vegetative growth.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Vegetative organ - Root,  Vegetative organ - Culm	Os08g0246300	LOC_Os08g14850.1				GO:0006952 - defense response, GO:0009266 - response to temperature stimulus, GO:0009826 - unidimensional cell growth, GO:0048830 - adventitious root development, GO:0048364 - root development, GO:0010449 - root meristem growth, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0048367 - shoot development, GO:0008283 - cell proliferation, GO:0043531 - ADP binding, GO:0005524 - ATP binding	TO:0000432 - temperature response trait, TO:0000592 - 1000-dehulled grain weight, TO:0002668 - jasmonic acid content, TO:0000470 - vascular tissue related trait, TO:0000346 - tiller number, TO:0000734 - grain length, TO:0000040 - panicle length, TO:0000456 - spikelet number, TO:0000654 - shoot development trait, TO:0000457 - total biomass yield, TO:0002692 - root meristem development, TO:0000476 - growth hormone content, TO:0002685 - crown root number, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000296 - vegetative vigor, TO:0000303 - cold tolerance, TO:0000656 - root development trait	PO:0007520 - root development stage 
24209	ROD1	OsROD1	RESISTANCE OF RICE TO DISEASES 1	RESISTANCE OF RICE TO DISEASES1		rod1, ROD1(SNP1A), ROD1(SNP1C)	6	GO:0061891: calcium ion sensor activity. GO:2000377: regulation of reactive oxygen species metabolic process. PO:0030123: panicle inflorescence. GO:0090567: reproductive shoot system development.	 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance	Os06g0128800	LOC_Os06g03810.1				GO:0050776 - regulation of immune response, GO:0022414 - reproductive process, GO:0019722 - calcium-mediated signaling, GO:0008289 - lipid binding, GO:0035091 - phosphoinositide binding, GO:0005509 - calcium ion binding, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010450 - inflorescence meristem growth	TO:0000476 - growth hormone content, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content, TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0002668 - jasmonic acid content	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0000230 - inflorescence meristem 
24211	TAS3D	OsTAS3d, TAS3d	TRANS-ACTING siRNA3D	TRANS-ACTING siRNA3d			1	AP014957.1: 10960715-10961005 (a position inside Os01g0299100).	 Other						GO:0016246 - RNA interference		
24212	SDR7-6	OsSDR7-6	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 7-6	short-chain alcohol dehydrogenase/reductase 7-6	SHORT-CHAIN ALCOHOL DEHYDROGENASE/REDUCTASE 7-6	mic, sdr7-6	7	TO:0000975: grain width. a momilactone biosynthetic gene.	 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character,  Character as QTL - Yield and productivity,  Coloration - Chlorophyll,  Character as QTL - Plant growth activity,  Vegetative organ - Culm	Os07g0663900 	LOC_Os07g46860.1				GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0070265 - necrotic cell death, GO:0005783 - endoplasmic reticulum, GO:0016491 - oxidoreductase activity, GO:0060548 - negative regulation of cell death, GO:0009416 - response to light stimulus, GO:0002238 - response to molecule of fungal origin, GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0009863 - salicylic acid mediated signaling pathway	TO:0000592 - 1000-dehulled grain weight, TO:0000075 - light sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0002668 - jasmonic acid content, TO:0000605 - hydrogen peroxide content, TO:0000397 - grain size, TO:0000455 - seed set percent, TO:0000590 - grain weight, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000399 - grain thickness	
24213	BIRG1	OsBIRG1	BIG RICE GRAIN 1			birg1, birg1-1, birg1-2	3	GO:0071244: cellular response to carbon dioxide. GO:1902456: regulation of stomatal opening. PO:0030123: panicle inflorescence. TO:0000975: grain width.TO:0006060: leaf chlorosis. GO:0062052: starch granule initiation. TO:0001069: cooking quality trait.	 Vegetative organ - Culm,  Seed - Physiological traits - Taste,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os03g0858800	LOC_Os03g64150.1				GO:0042910 - xenobiotic transporter activity, GO:0009651 - response to salt stress, GO:0015108 - chloride transmembrane transporter activity, GO:0015562 - efflux transmembrane transporter activity, GO:0016020 - membrane, GO:0010431 - seed maturation, GO:0055064 - chloride ion homeostasis, GO:0001558 - regulation of cell growth, GO:0015297 - antiporter activity, GO:0022857 - transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000598 - protein content, TO:0006001 - salt tolerance, TO:0002661 - seed maturation, TO:0000734 - grain length, TO:0000399 - grain thickness, TO:0000592 - 1000-dehulled grain weight, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000068 - lodging incidence, TO:0000040 - panicle length, TO:0002759 - grain number, TO:0000455 - seed set percent, TO:0000696 - starch content, TO:0000057 - grain moisture, TO:0001015 - photosynthetic rate, TO:0000397 - grain size	PO:0025034 - leaf , PO:0007632 - seed maturation stage , PO:0009051 - spikelet , PO:0025281 - pollen , PO:0009030 - carpel , PO:0000293 - guard cell , PO:0009010 - seed , PO:0020141 - stem node , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009005 - root , PO:0009047 - stem , PO:0020104 - leaf sheath 
24214	FLO19	ptPDC-E1-alpha1, OsptPDC-E1-alpha1, PDH-E1alpha, OsPDH-E1alpha	FLOURY ENDOSPERM 19	floury endosperm19, Plastidic pyruvate dehydrogenase complex E1 component subunit Alpha1, plastid-localized pyruvate dehydrogenase complex E1 component subunit alpha1, Pyruvate dehydrogenase E1 component subunit alpha-3	PLASTIDIC PYRUVATE DEHYDROGENASE COMPLEX E1 COMPONENT SUBUNIT ALPHA1	flo19, pFLO19S, pFLO19L	4	Q7XTJ3. Pyruvate dehydrogenase E1 component subunit alpha-3 in Huang et al. 2020.  PO:0030123: panicle inflorescence. TO:0000975: grain width TO:0001069: cooking quality trait.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Biochemical character,  Seed - Morphological traits - Grain shape,  Seed - Morphological traits - Endosperm,  Character as QTL - Yield and productivity,  Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances,  Character as QTL - Plant growth activity	Os04g0119400	LOC_Os04g02900.2, LOC_Os04g02900.1				GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity, GO:0006086 - acetyl-CoA biosynthetic process from pyruvate, GO:0009660 - amyloplast organization, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0043231 - intracellular membrane-bounded organelle, GO:0019375 - galactolipid biosynthetic process, GO:0009960 - endosperm development, GO:0019252 - starch biosynthetic process, GO:0006096 - glycolysis, GO:0009536 - plastid	TO:0000207 - plant height, TO:0000399 - grain thickness, TO:0000696 - starch content, TO:0000196 - amylose content, TO:0000397 - grain size, TO:0000449 - grain yield per plant, TO:0000604 - fat and essential oil content, TO:0006001 - salt tolerance, TO:0000487 - endosperm color, TO:0000104 - floury endosperm, TO:0000592 - 1000-dehulled grain weight, TO:0000598 - protein content, TO:0000396 - grain yield, TO:0002658 - starch grain synthesis, TO:0000181 - seed weight, TO:0000391 - seed size, TO:0000734 - grain length	PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0007633 - endosperm development stage , PO:0009047 - stem , PO:0000003 - whole plant 
24215	PTPDC-E1-BETA1	ptPDC-E1-beta1, OsptPDC-E1-beta1, PDH-E1beta, OsPDH-E1beta	PLASTIDIC PYRUVATE DEHYDROGENASE COMPLEX E1 COMPONENT SUBUNIT BETA1	Plastidic pyruvate dehydrogenase complex E1 component subunit beta1, plastid-localized pyruvate dehydrogenase complex E1 component subunit beta1	PLASTIDIC PYRUVATE DEHYDROGENASE COMPLEX E1 COMPONENT SUBUNIT BETA1		12	Q2QM55.	 Biochemical character	Os12g0616900	LOC_Os12g42230.1				GO:0009507 - chloroplast, GO:0006086 - acetyl-CoA biosynthetic process from pyruvate, GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity, GO:0006096 - glycolysis		PO:0000003 - whole plant 
24216	PTPDC-E1-BETA2	ptPDC-E1-beta2, OsptPDC-E1-beta2	PLASTIDIC PYRUVATE DEHYDROGENASE COMPLEX E1 COMPONENT SUBUNIT BETA2	Plastidic pyruvate dehydrogenase complex E1 component subunit beta2, plastid-localized pyruvate dehydrogenase complex E1 component subunit beta2	PLASTIDIC PYRUVATE DEHYDROGENASE COMPLEX E1 COMPONENT SUBUNIT BETA2		3	Q10G39.	 Biochemical character	Os03g0645100	LOC_Os03g44300.2, LOC_Os03g44300.1				GO:0009507 - chloroplast, GO:0006096 - glycolysis, GO:0006086 - acetyl-CoA biosynthetic process from pyruvate, GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity		PO:0000003 - whole plant 
24217	_	ptPDC-E2, OsptPDC-E2	_	Plastidic pyruvate dehydrogenase complex E2 component, plastid-localized pyruvate dehydrogenase complex E2 component			9		 Biochemical character	Os09g0408600	LOC_Os09g24320.1				GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope, GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity		
24218	_	ptPDC-E2, OsptPDC-E2	_	Plastidic pyruvate dehydrogenase complex E2 component, plastid-localized pyruvate dehydrogenase complex E2 component			8		 Biochemical character	Os08g0431300	LOC_Os08g33440.1				GO:0009941 - chloroplast envelope, GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity, GO:0009534 - chloroplast thylakoid		
24219	PTPDC-E2	ptPDC-E2, OsptPDC-E2, PDH-E2, OsPDH-E2	PLASTIDIC PYRUVATE DEHYDROGENASE COMPLEX E2 COMPONENT 	Plastidic pyruvate dehydrogenase complex E2 component, plastid-localized pyruvate dehydrogenase complex E2 component	PLASTIDIC PYRUVATE DEHYDROGENASE COMPLEX E2 COMPONENT 		12		 Biochemical character	Os12g0182200	LOC_Os12g08170.1				GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity, GO:0009534 - chloroplast thylakoid, GO:0009941 - chloroplast envelope		
24220	LPD2	ptPDC-E3, OsptPDC-E3, OsLPD2	LIPOAMIDE DEHYDROGENASE 2	Plastidic pyruvate dehydrogenase complex E3 component, plastid-localized pyruvate dehydrogenase complex E3 component, lipoamide dehydrogenase 2	LIPOAMIDE DEHYDROGENASE 2		1		 Biochemical character	Os01g0337900	LOC_Os01g23610.2, LOC_Os01g23610.1				GO:0004148 - dihydrolipoyl dehydrogenase activity, GO:0050660 - FAD binding, GO:0045454 - cell redox homeostasis		
24221	LPD1	ptPDC-E3, OsptPDC-E3, OsLPD1	LIPOAMIDE DEHYDROGENASE 1	Plastidic pyruvate dehydrogenase complex E3 component, plastid-localized pyruvate dehydrogenase complex E3 component, lipoamide dehydrogenase 1	LIPOAMIDE DEHYDROGENASE 1		5		 Biochemical character	Os05g0156700	LOC_Os05g06460.1				GO:0050660 - FAD binding, GO:0016021 - integral to membrane, GO:0045454 - cell redox homeostasis, GO:0004148 - dihydrolipoyl dehydrogenase activity, GO:0016491 - oxidoreductase activity		
24222	CYP87A3	OsCYP87A3	CYTOCHROME P450 87A3	Cytochrome P450 87A3	CYTOCHROME P450 87A3		4	AJ459255. Q7XU38.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0570000	LOC_Os04g48170.1				GO:0020037 - heme binding, GO:0016125 - sterol metabolic process, GO:0046898 - response to cycloheximide, GO:0005938 - cell cortex, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009734 - auxin mediated signaling pathway, GO:0009637 - response to blue light, GO:0010218 - response to far red light, GO:0010114 - response to red light, GO:0009642 - response to light intensity, GO:0009416 - response to light stimulus, GO:0009733 - response to auxin stimulus, GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016491 - oxidoreductase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016132 - brassinosteroid biosynthetic process, GO:0010268 - brassinosteroid homeostasis, GO:0030659 - cytoplasmic vesicle membrane	TO:0000460 - light intensity sensitivity, TO:0000075 - light sensitivity, TO:0000158 - red light sensitivity, TO:0000159 - blue light sensitivity, TO:0000130 - far red light sensitivity, TO:0000163 - auxin sensitivity	PO:0007045 - coleoptile emergence stage , PO:0009005 - root , PO:0020033 - coleoptile 
24223	BCAT1	OsBCAT1	BRANCHED-CHAIN AMINOTRANSFERASE 1	branched-chain aminotransferase1	BRANCHED-CHAIN AMINOTRANSFERASE 1		3	GO:0052656: L-isoleucine transaminase activity. GO:0052654: L-leucine transaminase activity. GO:0052655: L-valine transaminase activity.	 Biochemical character	Os03g0106400	LOC_Os03g01600.1				GO:0009082 - branched chain family amino acid biosynthetic process, GO:0050048 - L-leucine:2-oxoglutarate aminotransferase activity, GO:0004084 - branched-chain-amino-acid transaminase activity, GO:0008652 - cellular amino acid biosynthetic process		
24224	BCAT2	OsBCAT2	BRANCHED-CHAIN AMINOTRANSFERASE 2	branched-chain aminotransferase2	BRANCHED-CHAIN AMINOTRANSFERASE 2		3	GO:0052656: L-isoleucine transaminase activity. GO:0052654: L-leucine transaminase activity. GO:0052655: L-valine transaminase activity.	 Biochemical character	Os03g0231600	LOC_Os03g12890.5, LOC_Os03g12890.4, LOC_Os03g12890.3, LOC_Os03g12890.2, LOC_Os03g12890.1				GO:0004084 - branched-chain-amino-acid transaminase activity, GO:0008652 - cellular amino acid biosynthetic process, GO:0009082 - branched chain family amino acid biosynthetic process, GO:0050048 - L-leucine:2-oxoglutarate aminotransferase activity		
24225	BCAT3	OsBCAT3	BRANCHED-CHAIN AMINOTRANSFERASE 3	branched-chain aminotransferase3	BRANCHED-CHAIN AMINOTRANSFERASE 3		4	GO:0052656: L-isoleucine transaminase activity. GO:0052654: L-leucine transaminase activity. GO:0052655: L-valine transaminase activity.	 Biochemical character	Os04g0559400	LOC_Os04g47190.2, LOC_Os04g47190.1				GO:0004084 - branched-chain-amino-acid transaminase activity, GO:0009082 - branched chain family amino acid biosynthetic process, GO:0050048 - L-leucine:2-oxoglutarate aminotransferase activity, GO:0008652 - cellular amino acid biosynthetic process		
24226	BCAT4	OsBCAT4	BRANCHED-CHAIN AMINOTRANSFERASE 4	branched-chain aminotransferase4	BRANCHED-CHAIN AMINOTRANSFERASE 4		5	GO:0052656: L-isoleucine transaminase activity. GO:0052654: L-leucine transaminase activity. GO:0052655: L-valine transaminase activity.	 Biochemical character	Os05g0558400	LOC_Os05g48450.5, LOC_Os05g48450.4, LOC_Os05g48450.3, LOC_Os05g48450.2, LOC_Os05g48450.1				GO:0008652 - cellular amino acid biosynthetic process, GO:0009082 - branched chain family amino acid biosynthetic process, GO:0050048 - L-leucine:2-oxoglutarate aminotransferase activity, GO:0004084 - branched-chain-amino-acid transaminase activity		
24227	BCAT5	OsBCAT5	BRANCHED-CHAIN AMINOTRANSFERASE 5	branched-chain aminotransferase5	BRANCHED-CHAIN AMINOTRANSFERASE 5		10	GO:0052656: L-isoleucine transaminase activity. GO:0052654: L-leucine transaminase activity. GO:0052655: L-valine transaminase activity.	 Biochemical character	Os10g0549500	LOC_Os10g40200.1				GO:0008652 - cellular amino acid biosynthetic process, GO:0004084 - branched-chain-amino-acid transaminase activity, GO:0009082 - branched chain family amino acid biosynthetic process, GO:0050048 - L-leucine:2-oxoglutarate aminotransferase activity		
24228	ENOYL-COA	OsEnoyl-CoA	ENOYL-COA HYDRATASE	enoyl-CoA hydratase	ENOYL-COA HYDRATASE		10		 Biochemical character	Os10g0552900	LOC_Os10g40540.1				GO:0006574 - valine catabolic process, GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity		
24229	ETFQO	OsETFQO	ELECTRON-TRANSFER FLAVOPROTEIN:UBIQUINONE OXIDOREDUCTASE		ELECTRON-TRANSFER FLAVOPROTEIN:UBIQUINONE OXIDOREDUCTASE		10	Q337B8.	 Biochemical character	Os10g0516300	LOC_Os10g37210.1				GO:0048039 - ubiquinone binding, GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0043783 - oxidoreductase activity, oxidizing metal ions with flavin as acceptor, GO:0022900 - electron transport chain, GO:0031305 - integral to mitochondrial inner membrane, GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity, GO:0046872 - metal ion binding		
24230	MCCB	OsMCCB	METHYLCROTONYL-COA CARBOXYLASE B	3-METHYLCROTONYL-COA CARBOXYLASE B	METHYLCROTONYL-COA CARBOXYLASE B		8	GO:1905202: methylcrotonoyl-CoA carboxylase complex.	 Biochemical character	Os08g0424200	LOC_Os08g32850.2, LOC_Os08g32850.1				GO:0006552 - leucine catabolic process, GO:0005524 - ATP binding, GO:0016874 - ligase activity, GO:0005739 - mitochondrion		
24231	CHR719	OsCHR719	CHROMATIN REMODELING FACTOR 719	chromatin remodeling factor 719	CHROMATIN REMODELING FACTOR 719		5	Q60EX7. a putative SWI/SNF ATPase. a putative rice SWI/SNF CRC component. GO:0140603: ATP hydrolysis activity. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0144300	LOC_Os05g05230.1				GO:0042393 - histone binding, GO:0003678 - DNA helicase activity, GO:0005524 - ATP binding, GO:0008094 - DNA-dependent ATPase activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0016787 - hydrolase activity, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0043044 - ATP-dependent chromatin remodeling, GO:0070615 - nucleosome-dependent ATPase activity, GO:0040008 - regulation of growth	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
24232	PH9	OsH4, H4, OsPH9	PLANT HEIGHT 9	histone 4, histone H4		osph9	9		 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os09g0433600	LOC_Os09g26340.1				GO:0000786 - nucleosome, GO:0046982 - protein heterodimerization activity, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000207 - plant height	
24233	_		_				5		 Tolerance and resistance - Stress tolerance	Os05g0176700	LOC_Os05g08420.2, LOC_Os05g08420.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
24234	_		_				5		 Tolerance and resistance - Stress tolerance	Os05g0275600	LOC_Os05g19470.7, LOC_Os05g19470.6, LOC_Os05g19470.5, LOC_Os05g19470.4, LOC_Os05g19470.3, LOC_Os05g19470.2, LOC_Os05g19470.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
24235	2R_MYB22 	OsMYB1, MYB1, Os2R_MYB22	R2R3-MYB TRANSCRIPTION FACTOR 22	Myb transcription factor 1, R2R3-MYB Transcription Factor 22	R2R3-MYB TRANSCRIPTION FACTOR 22		2	GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.	 Other	Os02g0187700	LOC_Os02g09480.1				GO:0005634 - nucleus, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
24236	CYP92A11	OsCYP92A11	CYTOCHROME P450 92A11	Cytochrome P450 92A11	CYTOCHROME P450 92A11		9		 Biochemical character	Os09g0441100   	LOC_Os09g26940.1				GO:0046677 - response to antibiotic, GO:0002238 - response to molecule of fungal origin, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
24237	CYP89B1	OsCYP89B1	CYTOCHROME P450 89B1	Cytochrome P450 89B1	CYTOCHROME P450 89B1		10		 Biochemical character	Os10g0515900   	LOC_Os10g37160.1				GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016021 - integral to membrane, GO:0002238 - response to molecule of fungal origin, GO:0046677 - response to antibiotic, GO:0005506 - iron ion binding		
24238	CYP71AK2	OsCYP71AK2, OsCYP71AK, CYP71AK	CYTOCHROME P450 71AK2	Cytochrome P450 71AK2	CYTOCHROME P450 71AK2		9	BGIOSGA031135. OsCYP71AK in Sahoo et al. 2023. 	 Biochemical character	Os09g0530300   	LOC_Os09g36080.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0016021 - integral to membrane, GO:0046677 - response to antibiotic, GO:0002238 - response to molecule of fungal origin, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen		
24239	CYP71C16	OsCYP71C16, OsCYP71C7, CYP71C7	CYTOCHROME P450 71C16	Cytochrome P450 71C16	CYTOCHROME P450 71C16		8	BGIOSGA027841. OsCYP71C7 in Sahoo et al. 2023. 	 Biochemical character	Os08g0106300   	LOC_Os08g01520.1				GO:0004497 - monooxygenase activity, GO:0002238 - response to molecule of fungal origin, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0046677 - response to antibiotic		
24240	_		_	PsbP-like protein 1			8			Os08g0347500 	LOC_Os08g25900.1, LOC_Os08g25890.1				GO:0005509 - calcium ion binding, GO:0015979 - photosynthesis, GO:0019898 - extrinsic to membrane, GO:0009654 - oxygen evolving complex		
24241	MIS12	OsMIS12	MINICHROMOSOME INSTABILITY 12				2			Os02g0620100	LOC_Os02g40680.1				GO:0000278 - mitotic cell cycle, GO:0034501 - protein localization to kinetochore, GO:0051301 - cell division, GO:0000818 - nuclear MIS12/MIND type complex, GO:0000070 - mitotic sister chromatid segregation, GO:0051382 - kinetochore assembly, GO:0005634 - nucleus, GO:0000776 - kinetochore		
24242	NDC80	OsNDC80	NUCLEAR DIVISION CYCLE 80				8			Os08g0468400	LOC_Os08g36490.1				GO:0051301 - cell division, GO:0051315 - attachment of spindle microtubules to kinetochore during mitosis, GO:0031262 - Ndc80 complex		
24243	_		_	an uncharacterized protein			2			Os02g0582900	LOC_Os02g37190.1				GO:0009609 - response to symbiotic bacterium, GO:0044403 - symbiosis, encompassing mutualism through parasitism		PO:0009005 - root 
24244	D305	OsD305, OsMRLK62, MRLK62	_		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 62		9	CT837618.		Os09g0358000	LOC_Os09g19350.1				GO:0009609 - response to symbiotic bacterium, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		PO:0009005 - root 
24245	ZPR1	OsZPR1	LITTLE ZIPPER FAMILY PROTEIN 1	LITTLE ZIPPER family protein 1, LITTLE ZIPPER 1	LITTLE ZIPPER FAMILY PROTEIN 1		2			Os02g0530500	LOC_Os02g32850.1						
24246	ZPR2	OsZPR2	LITTLE ZIPPER FAMILY PROTEIN 2	LITTLE ZIPPER family protein 2, LITTLE ZIPPER 2	LITTLE ZIPPER FAMILY PROTEIN 2		4			Os04g0411200	LOC_Os04g33560.1						
24247	ZPR3	OsZPR3	LITTLE ZIPPER FAMILY PROTEIN 3	LITTLE ZIPPER family protein 3, LITTLE ZIPPER 3	LITTLE ZIPPER FAMILY PROTEIN 3		9			Os09g0520500	LOC_Os09g34890.1						
24248	ZPR5	OsZPR5	LITTLE ZIPPER FAMILY PROTEIN 5	LITTLE ZIPPER family protein 5, LITTLE ZIPPER 5	LITTLE ZIPPER FAMILY PROTEIN 5		11				LOC_Os11g05430.1						
24249	ZPR4	OsZPR4	LITTLE ZIPPER FAMILY PROTEIN 4	LITTLE ZIPPER family protein 4, LITTLE ZIPPER 4	LITTLE ZIPPER FAMILY PROTEIN 4		12		 Vegetative organ - Leaf	Os12g0151600	LOC_Os12g05560.1				GO:0048366 - leaf development	TO:0000655 - leaf development trait	PO:0020148 - shoot apical meristem , PO:0025275 - procambium , PO:0005020 - vascular bundle , PO:0025127 - primordium , PO:0001050 - leaf development stage 
24250	RPS3AB	RPS3aB, OsRPS3aB	RIBOSOMAL PROTEIN S3AB	ribosomal protein S3AB	RIBOSOMAL PROTEIN S3AB		12			Os12g0406200	LOC_Os12g21798.1				GO:0022627 - cytosolic small ribosomal subunit, GO:0005829 - cytosol, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome		
24251	VHA-E2	OsVHA-E2, OsRHA2, RHA2	VACUOLAR H-ATPASE E2 SUBUNIT	vacuolar ATP synthase subunit E2, vacuolar H+-ATPase subunit E isoform 2, Vacuolar H-ATPase E2 subunit	VACUOLAR H-ATPASE E2 SUBUNIT		5	PO:0030123: panicle inflorescence.	 Biochemical character	Os05g0480700	LOC_Os05g40230.1				GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism, GO:0005773 - vacuole, GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain, GO:0046961 - proton-transporting ATPase activity, rotational mechanism		PO:0009049 - inflorescence 
24252	VHA-E3	OsVHA-E3	VACUOLAR H-ATPASE E3 SUBUNIT	vacuolar ATP synthase subunit E3, vacuolar H+-ATPase subunit E isoform 3, Vacuolar H-ATPase E3 subunit	VACUOLAR H-ATPASE E3 SUBUNIT		1		 Biochemical character	Os01g0222500	LOC_Os01g12260.1				GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism		PO:0009051 - spikelet , PO:0009089 - endosperm , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009005 - root 
24253	VHA-B2	OsVHA-B2	VACUOLAR H-ATPASE B2 SUBUNIT	Vacuolar H-ATPase B2 subunit, vacuolar-ATPase subunit B2, vacuolar H+-ATPase B2 subunit, V-ATPase B2, Vacuolar ATPase B2 subunit	VACUOLAR H-ATPASE B2 SUBUNIT		1	GO:1902600: proton transmembrane transport.	 Biochemical character	Os01g0711000	LOC_Os01g51380.2, LOC_Os01g51380.1				GO:0005524 - ATP binding, GO:0033180 - proton-transporting V-type ATPase, V1 domain, GO:0046034 - ATP metabolic process		
24254	VHA-F	OsVHA-F	VACUOLAR H-ATPASE F SUBUNIT	Vacuolar H-ATPase F subunit, vacuolar-ATPase subunit F, vacuolar H+-ATPase F subunit, V-ATPase F, Vacuolar ATPase F subunit	VACUOLAR H-ATPASE F SUBUNIT		2		 Biochemical character	Os02g0824700	LOC_Os02g57854.2, LOC_Os02g57854.1				GO:0016020 - membrane, GO:0033180 - proton-transporting V-type ATPase, V1 domain, GO:0042625 - ATPase activity, coupled to transmembrane movement of ions, GO:0046961 - proton-transporting ATPase activity, rotational mechanism		
24255	VHA-G	OsVHA-G	VACUOLAR H-ATPASE G SUBUNIT	Vacuolar H-ATPase G subunit, vacuolar-ATPase subunit G, vacuolar H+-ATPase G subunit, V-ATPase G, Vacuolar ATPase G subunit	VACUOLAR H-ATPASE G SUBUNIT		4	GO:1902600: proton transmembrane transport.	 Biochemical character	Os04g0601700	LOC_Os04g51270.2, LOC_Os04g51270.1				GO:0016471 - vacuolar proton-transporting V-type ATPase complex, GO:0042626 - ATPase activity, coupled to transmembrane movement of substances		
24256	VHA-H1	OsVHA-H1	VACUOLAR H-ATPASE H1 SUBUNIT	Vacuolar H-ATPase H1 subunit, vacuolar-ATPase subunit H1, vacuolar H+-ATPase H1 subunit, V-ATPase H1, Vacuolar ATPase H1 subunit	VACUOLAR H-ATPASE H1 SUBUNIT		7		 Biochemical character		LOC_Os07g36470.1						
24257	VHA-H2	OsVHA-H2	VACUOLAR H-ATPASE H2 SUBUNIT	Vacuolar H-ATPase H2 subunit, vacuolar-ATPase subunit H2, vacuolar H+-ATPase H2 subunit, V-ATPase H2, Vacuolar ATPase H2 subunit	VACUOLAR H-ATPASE H2 SUBUNIT		7	Q84ZC0. 	 Biochemical character	Os07g0549700	LOC_Os07g36465.1				GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain		
24258	VHA-a1	OsVHA-a1	VACUOLAR H-ATPASE a1 SUBUNIT	Vacuolar H-ATPase a1 subunit, vacuolar-ATPase subunit a1, vacuolar H+-ATPase a1 subunit, V-ATPase a1, Vacuolar ATPase a1 subunit	VACUOLAR H-ATPASE a1 SUBUNIT		3		 Biochemical character	Os03g0251500	LOC_Os03g14690.1				GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0051117 - ATPase binding, GO:0007035 - vacuolar acidification, GO:0016471 - vacuolar proton-transporting V-type ATPase complex, GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain, GO:0016021 - integral to membrane, GO:0015078 - hydrogen ion transmembrane transporter activity		
24259	VHA-a2	OsVHA-a2	VACUOLAR H-ATPASE a2 SUBUNIT	Vacuolar H-ATPase a2 subunit, vacuolar-ATPase subunit a2, vacuolar H+-ATPase a2 subunit, V-ATPase a2, Vacuolar ATPase a2 subunit	VACUOLAR H-ATPASE a2 SUBUNIT		10		 Biochemical character	Os10g0184300	LOC_Os10g10500.1				GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain		
24260	VHA-c	OsVHA-c	VACUOLAR H-ATPASE c SUBUNIT	Vacuolar H-ATPase c subunit, vacuolar-ATPase subunit c, vacuolar H+-ATPase c subunit, V-ATPase c, Vacuolar ATPase c subunit	VACUOLAR H-ATPASE c SUBUNIT		2		 Biochemical character	Os02g0550100	LOC_Os02g34510.1				GO:0016021 - integral to membrane, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0005774 - vacuolar membrane, GO:0033179 - proton-transporting V-type ATPase, V0 domain, GO:0015078 - hydrogen ion transmembrane transporter activity		
24261	VHA-D	OsVHA-d, VHA-d	VACUOLAR H-ATPASE D SUBUNIT	Vacuolar H-ATPase d subunit, vacuolar-ATPase subunit d, vacuolar H+-ATPase d subunit, V-ATPase d, Vacuolar ATPase d subunit	VACUOLAR H-ATPASE D SUBUNIT		1	Q8RU33.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0587000	LOC_Os01g40470.1				GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0051607 - defense response to virus, GO:0016471 - vacuolar proton-transporting V-type ATPase complex, GO:0033179 - proton-transporting V-type ATPase, V0 domain, GO:0007034 - vacuolar transport, GO:0007035 - vacuolar acidification, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0010115 - regulation of abscisic acid biosynthetic process	TO:0000148 - viral disease resistance	
24262	P3IP	OsP3IP	P3 INTERACTING PROTEIN	p3 interacting protein	P3 INTERACTING PROTEIN		2	"AP005006.3: join(27420..27466,27651..27751,27876..28162): gene=\"P0519E06.9\": protein_id=\"BAD25667.1\". GO:0038024: cargo receptor activity."	 Tolerance and resistance - Disease resistance						GO:0006914 - autophagy, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance	
24263	NSUN1	OsNSUN1	NOP2/SUN DOMAIN FAMILY MEMBER 1	NOP/SUN family protein 1, NOP2/Sun domain family member 1, NOP2/ Sun RNA methyltransferase family member 1	NOP2/SUN DOMAIN FAMILY MEMBER 1	osnsun1, osnsun1-1, osnsun1-2	8		 Tolerance and resistance - Stress tolerance	Os08g0484400	LOC_Os08g37780.2, LOC_Os08g37780.1				GO:0009409 - response to cold, GO:0008168 - methyltransferase activity, GO:0005634 - nucleus, GO:0000049 - tRNA binding, GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity, GO:0001510 - RNA methylation, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	PO:0000037 - shoot apex 
24264	NSUN4	OsNSUN4	NOP2/SUN DOMAIN FAMILY MEMBER 4	NOP/SUN family protein 4, NOP2/Sun domain family member 4, NOP2/ Sun RNA methyltransferase family member 4	NOP2/SUN DOMAIN FAMILY MEMBER 4		2			Os02g0724600	LOC_Os02g49270.1				GO:0000470 - maturation of LSU-rRNA, GO:0001510 - RNA methylation, GO:0009383 - rRNA (cytosine-C5-)-methyltransferase activity, GO:0003723 - RNA binding, GO:0070475 - rRNA base methylation, GO:0005730 - nucleolus		
24265	NSUN5	OsNSUN5	NOP2/SUN DOMAIN FAMILY MEMBER 5	NOP/SUN family protein 5, NOP2/Sun domain family member 5, NOP2/ Sun RNA methyltransferase family member 5	NOP2/SUN DOMAIN FAMILY MEMBER 5		9			Os09g0551300	LOC_Os09g37860.1				GO:0070475 - rRNA base methylation, GO:0001510 - RNA methylation, GO:0003723 - RNA binding, GO:0009383 - rRNA (cytosine-C5-)-methyltransferase activity, GO:0000470 - maturation of LSU-rRNA, GO:0005730 - nucleolus		
24266	NSUN6	OsNSUN6	NOP2/SUN DOMAIN FAMILY MEMBER 6	NOP/SUN family protein 6, NOP2/Sun domain family member 6, NOP2/ Sun RNA methyltransferase family member 6	NOP2/SUN DOMAIN FAMILY MEMBER 6		8			Os08g0365900	LOC_Os08g27824.1				GO:0008168 - methyltransferase activity, GO:0001510 - RNA methylation, GO:0003723 - RNA binding		
24267	NSUN7	OsNSUN7	NOP2/SUN DOMAIN FAMILY MEMBER 7	NOP/SUN family protein 7, NOP2/Sun domain family member 7, NOP2/ Sun RNA methyltransferase family member 7	NOP2/SUN DOMAIN FAMILY MEMBER 7		2			Os02g0217800	LOC_Os02g12600.1				GO:0070475 - rRNA base methylation, GO:0005730 - nucleolus, GO:0008168 - methyltransferase activity, GO:0003729 - mRNA binding, GO:0001510 - RNA methylation		
24268	NSUN8	OsNSUN8	NOP2/SUN DOMAIN FAMILY MEMBER 8	NOP/SUN family protein 8, NOP2/Sun domain family member 8, NOP2/ Sun RNA methyltransferase family member 8	NOP2/SUN DOMAIN FAMILY MEMBER 8		9			Os09g0477900	LOC_Os09g30100.2, LOC_Os09g30100.1				GO:0003723 - RNA binding, GO:0001510 - RNA methylation, GO:0008649 - rRNA methyltransferase activity, GO:0005737 - cytoplasm, GO:0006355 - regulation of transcription, DNA-dependent, GO:0000470 - maturation of LSU-rRNA, GO:0009383 - rRNA (cytosine-C5-)-methyltransferase activity, GO:0070475 - rRNA base methylation, GO:0005730 - nucleolus		
24269	NDPK4	OsNDPK4	NUCLEOSIDE DIPHOSPHATE KINASE 4	nucleoside diphosphate kinase 4	NUCLEOSIDE DIPHOSPHATE KINASE 4	Osndpk4		GO:0036211: protein modification process. GO:0097009: energy homeostasis.	 Vegetative organ - Root,  Biochemical character,  Tolerance and resistance - Disease resistance						GO:0051510 - regulation of unidimensional cell growth, GO:0048507 - meristem development, GO:0048364 - root development, GO:0005829 - cytosol, GO:0006417 - regulation of translation, GO:0019222 - regulation of metabolic process, GO:0009607 - response to biotic stimulus, GO:0032350 - regulation of hormone metabolic process, GO:0042742 - defense response to bacterium, GO:0009755 - hormone-mediated signaling, GO:0017148 - negative regulation of translation, GO:0006275 - regulation of DNA replication, GO:0045787 - positive regulation of cell cycle	TO:0000656 - root development trait, TO:0000175 - bacterial blight disease resistance, TO:0000179 - biotic stress trait, TO:0002692 - root meristem development	PO:0007520 - root development stage 
24270	DEFL53	OsDEFL53	DEFENSIN-LIKE 53		DEFENSIN-LIKE 53		8				LOC_Os08g04520.1				GO:0009554 - megasporogenesis, GO:0048229 - gametophyte development		PO:0020003 - plant ovule , PO:0028003 - gametophyte development stage 
24271	SDP2	OsSDP2	SEX DETERMINATION PROTEIN 2	SEX DETERMINATION PROTEIN2	SEX DETERMINATION PROTEIN 2		11		 Biochemical character	Os11g0523110	LOC_Os11g32030.1				GO:0048229 - gametophyte development, GO:0016491 - oxidoreductase activity, GO:0009554 - megasporogenesis		PO:0028003 - gametophyte development stage , PO:0020003 - plant ovule 
24272	_	OsMYB1, MYB1	_	Myb transcription factor 1			10			Os10g0444100	LOC_Os10g30719.1				GO:0048229 - gametophyte development, GO:0009554 - megasporogenesis, GO:0003677 - DNA binding		PO:0028003 - gametophyte development stage , PO:0020003 - plant ovule 
24273	_	OsMYB3, MYB3	_	Myb transcription factor 3			8	GO:0000976: transcription cis-regulatory region binding.	 Other	Os08g0160300	LOC_Os08g06370.1				GO:0010158 - abaxial cell fate specification, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0009554 - megasporogenesis, GO:0048229 - gametophyte development		PO:0020003 - plant ovule , PO:0028003 - gametophyte development stage 
24274	PRP1.3	OsPRP1.3	PROLINE-RICH PROTEIN 1.3	proline-rich protein 1.3	PROLINE-RICH PROTEIN 1.3		10		 Tolerance and resistance - Stress tolerance	Os10g0150700	LOC_Os10g05990.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24275	_	PRP	_	proline-rich protein			10		 Tolerance and resistance - Stress tolerance	Os10g0149000	LOC_Os10g05820.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24276	_	PRP	_	proline-rich protein			10		 Tolerance and resistance - Stress tolerance	Os10g0150300	LOC_Os10g05950.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24277	PRP1.2	OsPRP1.2	PROLINE-RICH PROTEIN 1.2	proline-rich protein 1.2	PROLINE-RICH PROTEIN 1.2		10		 Tolerance and resistance - Stress tolerance	Os10g0150600	LOC_Os10g05980.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24278	PRP1.4	OsPRP1.4	PROLINE-RICH PROTEIN 1.4	proline-rich protein 1.4	PROLINE-RICH PROTEIN 1.4		10		 Tolerance and resistance - Stress tolerance	Os10g0150800	LOC_Os10g06000.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24279	OBGC1	OsObgC1, ObgC1	SPO0B-ASSOCIATED GTP-BINDING PROTEIN GTPASE C1	Spo0B-associated GTP-binding protein (Obg) GTPase C1, Obg GTPase C1, Spo0B-associated GTP-binding protein C1, Obg protein C1	SPO0B-ASSOCIATED GTP-BINDING PROTEIN GTPASE C1	obgc1-d, obgc1-d1, obgc1-d2	7	a homolog of the Bacillus subtilis Obg. a functional homolog of AtObgC. GO:1901259: chloroplast rRNA processing. GO:0090143: nucleoid organization.		Os07g0669250	LOC_Os07g47300.1				GO:0033259 - plastid DNA replication, GO:0042644 - chloroplast nucleoid, GO:0032544 - plastid translation, GO:0042255 - ribosome assembly, GO:0090069 - regulation of ribosome biogenesis, GO:0006275 - regulation of DNA replication, GO:0000166 - nucleotide binding, GO:0042256 - mature ribosome assembly		PO:0009006 - shoot system , PO:0025034 - leaf 
24280	CYP81E1	Cyt P450 81E1, OsCYP81E1, OsCYP71U9, CYP71U9	P450 81E1	Cytochrome P450 81E1	P450 81E1		3	BGIOSGA013605. OsCYP71U9 in Sahoo et al. 2023. 	 Biochemical character	Os03g0760300	LOC_Os03g55250.1				GO:0004497 - monooxygenase activity, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding		
24281	_		_	NB-ARC domain containing protein			8				LOC_Os08g30660.1						
24282	VSR1	OsVSR1	VACUOLAR SORTING RECEPTOR 1	vacuolar-sorting receptor, vacuolar sorting receptor 1	VACUOLAR SORTING RECEPTOR 1		10	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os10g0346600	LOC_Os10g20630.1				GO:0006623 - protein targeting to vacuole, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0017119 - Golgi transport complex, GO:0005768 - endosome, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0006896 - Golgi to vacuole transport, GO:0005509 - calcium ion binding		
24283	_		_	isoflavone reductase			12		 Biochemical character	Os12g0263800	LOC_Os12g16290.1				GO:0004190 - aspartic-type endopeptidase activity		
24284	VSR3	OsVSR3	VACUOLAR SORTING RECEPTOR 3	vacuolar-sorting receptor, vacuolar sorting receptor 3	VACUOLAR SORTING RECEPTOR 3		11	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os11g0116550	LOC_Os11g02464.1				GO:0006623 - protein targeting to vacuole, GO:0005794 - Golgi apparatus, GO:0005509 - calcium ion binding, GO:0006896 - Golgi to vacuole transport, GO:0005768 - endosome, GO:0017119 - Golgi transport complex, GO:0005802 - trans-Golgi network, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0006511 - ubiquitin-dependent protein catabolic process		
24285	_		_	serine/threonine-protein kinase receptor			4		 Biochemical character		LOC_Os04g34390.1						
24286	_		_	extra-large G-protein-related			5	GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance	Os05g0586400	LOC_Os05g50910.1, LOC_Os05g50910.2						
24287	HMGS1	OsHMGS1	3-HYDROXY-3-METHYLGLUTARYL-COA SYNTHASE 1	3-hydroxy-3-methylglutaryl-CoA synthase 1, HMG-CoA synthase 1	3-HYDROXY-3-METHYLGLUTARYL-COA SYNTHASE 1		9	GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0521400	LOC_Os09g34960.1				GO:0006084 - acetyl-CoA metabolic process, GO:0004421 - hydroxymethylglutaryl-CoA synthase activity, GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway, GO:0009416 - response to light stimulus, GO:0016126 - sterol biosynthetic process	TO:0000075 - light sensitivity	
24288	HMGS2	OsHMGS2	3-HYDROXY-3-METHYLGLUTARYL-COA SYNTHASE 2	3-hydroxy-3-methylglutaryl-CoA synthase 2, HMG-CoA synthase 2	3-HYDROXY-3-METHYLGLUTARYL-COA SYNTHASE 2		3	GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0118800	LOC_Os03g02710.1				GO:0009416 - response to light stimulus, GO:0006084 - acetyl-CoA metabolic process, GO:0016126 - sterol biosynthetic process, GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway, GO:0004421 - hydroxymethylglutaryl-CoA synthase activity	TO:0000075 - light sensitivity	
24289	HMGS3	OsHMGS3	3-HYDROXY-3-METHYLGLUTARYL-COA SYNTHASE 3	3-hydroxy-3-methylglutaryl-CoA synthase 3, HMG-CoA synthase 3	3-HYDROXY-3-METHYLGLUTARYL-COA SYNTHASE 3		8	GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0544900	LOC_Os08g43170.1				GO:0006084 - acetyl-CoA metabolic process, GO:0009416 - response to light stimulus, GO:0016126 - sterol biosynthetic process, GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway, GO:0004421 - hydroxymethylglutaryl-CoA synthase activity	TO:0000075 - light sensitivity	
24290	MK	OsMK	MEVALONATE KINASE	mevalonate kinase	MEVALONATE KINASE		10	GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0329300	LOC_Os10g18220.1				GO:0004496 - mevalonate kinase activity, GO:0016126 - sterol biosynthetic process, GO:0009416 - response to light stimulus, GO:0005524 - ATP binding, GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway	TO:0000075 - light sensitivity	
24291	PMK	OsPMK	PHOSPHO-MVA KINASE	phospho-mevalonate kinase, phospho-MVA kinase	PHOSPHO-MVA KINASE		3	GO:1902767: isoprenoid biosynthetic process via mevalonate.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0253100					GO:0005777 - peroxisome, GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway, GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway, GO:0005524 - ATP binding, GO:0004631 - phosphomevalonate kinase activity, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity	
24292	ZDS	OsZDS	ZETA-CAROTENE DESATURASE	zeta-carotene desaturase	ZETA-CAROTENE DESATURASE		7	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity. GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity. GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene. GO:1901177: lycopene biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Coloration - Others,  Biochemical character	Os07g0204900	LOC_Os07g10490.1				GO:0016491 - oxidoreductase activity, GO:0016120 - carotene biosynthetic process, GO:0016719 - carotene 7,8-desaturase activity, GO:0009416 - response to light stimulus, GO:0016117 - carotenoid biosynthetic process, GO:0050660 - FAD binding	TO:0000075 - light sensitivity	
24294	PGAM-I	PGAM-i, OsPGAM-i	_				5		 Biochemical character	Os05g0482700	LOC_Os05g40420.3, LOC_Os05g40420.2, LOC_Os05g40420.1				GO:0009609 - response to symbiotic bacterium, GO:0005737 - cytoplasm, GO:0006096 - glycolysis, GO:0006007 - glucose catabolic process, GO:0044262 - cellular carbohydrate metabolic process, GO:0030145 - manganese ion binding, GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity		
24295	_	OsUSP1, USP1	_	universal stress protein 1			1		 Tolerance and resistance - Stress tolerance	Os01g0170600	LOC_Os01g07590.1				GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0009009 - plant embryo , PO:0009005 - root , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0005052 - plant callus 
24296	USP2	OsUSP2	UNIVERSAL STRESS PROTEIN 2	universal stress protein 2	UNIVERSAL STRESS PROTEIN 2		1	UspA domain-containing protein. BGIOSGA003340 (indica).	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Insect resistance	Os01g0303800	LOC_Os01g19820.4, LOC_Os01g19820.3, LOC_Os01g19820.2, LOC_Os01g19820.1				GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009413 - response to flooding, GO:0009624 - response to nematode, GO:0009739 - response to gibberellin stimulus, GO:0002215 - defense response to nematode, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009408 - response to heat	TO:0000524 - submergence tolerance, TO:0000507 - osmotic adjustment capacity, TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000384 - nematode damage resistance	PO:0009009 - plant embryo , PO:0005052 - plant callus , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009005 - root 
24297	USP5	OsUSP5	UNIVERSAL STRESS PROTEIN 5	universal stress protein 5	UNIVERSAL STRESS PROTEIN 5		1		 Tolerance and resistance - Stress tolerance	Os01g0783500	LOC_Os01g57450.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0009005 - root , PO:0009009 - plant embryo 
24298	USP6	OsUSP6	UNIVERSAL STRESS PROTEIN 6	universal stress protein 6	UNIVERSAL STRESS PROTEIN 6		1		 Tolerance and resistance - Stress tolerance	Os01g0849600	LOC_Os01g63010.1				GO:0009739 - response to gibberellin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006979 - response to oxidative stress, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009751 - response to salicylic acid stimulus	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0002657 - oxidative stress, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	PO:0009009 - plant embryo , PO:0009005 - root , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0025034 - leaf 
24299	USP7	OsUSP7	UNIVERSAL STRESS PROTEIN 7	universal stress protein 7	UNIVERSAL STRESS PROTEIN 7		1			Os01g0875300	LOC_Os01g65440.1						PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0009005 - root , PO:0005052 - plant callus , PO:0025034 - leaf 
24300	USP11	OsUSP11	UNIVERSAL STRESS PROTEIN 11	universal stress protein 11	UNIVERSAL STRESS PROTEIN 11		2		 Tolerance and resistance - Stress tolerance	Os02g0705400	LOC_Os02g47650.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0005052 - plant callus 
24301	USP12	OsUSP12	UNIVERSAL STRESS PROTEIN 12	universal stress protein 12, Ethylene-responsive protein-like	UNIVERSAL STRESS PROTEIN 12		2		 Tolerance and resistance - Stress tolerance	Os02g0707900	LOC_Os02g47840.1				GO:0009409 - response to cold, GO:0016021 - integral to membrane, GO:0009737 - response to abscisic acid stimulus, GO:0010224 - response to UV-B, GO:0009751 - response to salicylic acid stimulus, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000601 - UV-B light sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0025034 - leaf , PO:0009005 - root , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0005052 - plant callus 
24302	USP13	OsUSP13	UNIVERSAL STRESS PROTEIN 13	universal stress protein 13	UNIVERSAL STRESS PROTEIN 13		2			Os02g0760500	LOC_Os02g52314.1						PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root , PO:0005052 - plant callus , PO:0009009 - plant embryo 
24303	USP14	OsUSP14	UNIVERSAL STRESS PROTEIN 14	universal stress protein 14	UNIVERSAL STRESS PROTEIN 14		2		 Tolerance and resistance - Stress tolerance	Os02g0773200	LOC_Os02g53320.1				GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0043621 - protein self-association, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm	TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0005052 - plant callus 
24304	USP17	OsUSP17, OsUSP3, USP3	UNIVERSAL STRESS PROTEIN 17	universal stress protein 17	UNIVERSAL STRESS PROTEIN 17		3	OsUSP3 in Liang et al. 2022.	 Tolerance and resistance - Stress tolerance	Os03g0305400	LOC_Os03g19270.1, LOC_Os03g19270.4, LOC_Os03g19270.3, LOC_Os03g19270.2				GO:0009413 - response to flooding, GO:0009620 - response to fungus	TO:0000524 - submergence tolerance	PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0005052 - plant callus , PO:0009049 - inflorescence 
24305	USP18	OsUSP18	UNIVERSAL STRESS PROTEIN 18	universal stress protein 18	UNIVERSAL STRESS PROTEIN 18		3			Os03g0344166	LOC_Os03g22390.1						
24306	USP19	OsUSP19	UNIVERSAL STRESS PROTEIN 19	universal stress protein 19	UNIVERSAL STRESS PROTEIN 19		3		 Tolerance and resistance - Stress tolerance	Os03g0750000	LOC_Os03g53900.5, LOC_Os03g53900.4, LOC_Os03g53900.3, LOC_Os03g53900.2, LOC_Os03g53900.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009005 - root 
24307	USP21	OsUSP21	UNIVERSAL STRESS PROTEIN 21	universal stress protein 21	UNIVERSAL STRESS PROTEIN 21		5			Os05g0157200	LOC_Os05g06500.1				GO:0009409 - response to cold		PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0005052 - plant callus 
24308	USP24	OsUSP24	UNIVERSAL STRESS PROTEIN 24	universal stress protein 24	UNIVERSAL STRESS PROTEIN 24		5			Os05g0428400	LOC_Os05g35380.1						PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009005 - root , PO:0005052 - plant callus , PO:0009049 - inflorescence 
24309	USP25	OsUSP25	UNIVERSAL STRESS PROTEIN 25	universal stress protein 25	UNIVERSAL STRESS PROTEIN 25		5			Os05g0453700	LOC_Os05g37970.4, LOC_Os05g37970.3, LOC_Os05g37970.2, LOC_Os05g37970.1						PO:0009005 - root , PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009009 - plant embryo , PO:0025034 - leaf 
24310	USP26	OsUSP26	UNIVERSAL STRESS PROTEIN 26	universal stress protein 26	UNIVERSAL STRESS PROTEIN 26		5		 Tolerance and resistance - Stress tolerance	Os05g0501700	LOC_Os05g42230.1				GO:0009413 - response to flooding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	PO:0005052 - plant callus , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009005 - root 
24311	USP36	OsUSP36	UNIVERSAL STRESS PROTEIN 36	universal stress protein 36	UNIVERSAL STRESS PROTEIN 36		10		 Tolerance and resistance - Stress tolerance	Os10g0437500	LOC_Os10g30150.2, LOC_Os10g30150.1				GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0005052 - plant callus 
24312	USP37	OsUSP37	UNIVERSAL STRESS PROTEIN 37	universal stress protein 37	UNIVERSAL STRESS PROTEIN 37		10			Os10g0463300	LOC_Os10g32590.1						PO:0009049 - inflorescence 
24313	USP42	OsUSP42	UNIVERSAL STRESS PROTEIN 42	universal stress protein 42	UNIVERSAL STRESS PROTEIN 42		12		 Tolerance and resistance - Stress tolerance	Os12g0501400	LOC_Os12g31710.1				GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	
24314	USP43	OsUSP43	UNIVERSAL STRESS PROTEIN 43	universal stress protein 43	UNIVERSAL STRESS PROTEIN 43		12			Os12g0552400	LOC_Os12g36630.1						PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009009 - plant embryo , PO:0025034 - leaf , PO:0009005 - root 
24315	USP44	OsUSP44	UNIVERSAL STRESS PROTEIN 44	universal stress protein 44	UNIVERSAL STRESS PROTEIN 44		12			Os12g0552500	LOC_Os12g36640.2, LOC_Os12g36640.1						PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0009005 - root , PO:0025034 - leaf , PO:0009009 - plant embryo 
24316	FLZ1	OsFLZ1	FCS-LIKE ZINC FINGER PROTEIN 1		FCS-LIKE ZINC FINGER PROTEIN 1		1			Os01g0180400	LOC_Os01g08520.1						PO:0009049 - inflorescence , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009010 - seed , PO:0009030 - carpel , PO:0009066 - anther , PO:0025034 - leaf , PO:0009006 - shoot system 
24317	FLZ2	OsFLZ2	FCS-LIKE ZINC FINGER PROTEIN 2		FCS-LIKE ZINC FINGER PROTEIN 2		1		 Tolerance and resistance - Stress tolerance	Os01g0593200	LOC_Os01g41010.2, LOC_Os01g41010.1				GO:0009413 - response to flooding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity, TO:0000524 - submergence tolerance	PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009066 - anther , PO:0009030 - carpel , PO:0009006 - shoot system , PO:0009010 - seed 
24318	FLZ3	OsFLZ3	FCS-LIKE ZINC FINGER PROTEIN 3		FCS-LIKE ZINC FINGER PROTEIN 3		1			Os01g0719000	LOC_Os01g52100.1						PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009010 - seed , PO:0009030 - carpel , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009006 - shoot system 
24319	FLZ4	OsFLZ4	FCS-LIKE ZINC FINGER PROTEIN 4		FCS-LIKE ZINC FINGER PROTEIN 4		2			Os02g0174800	LOC_Os02g07820.1						PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009006 - shoot system , PO:0009066 - anther , PO:0009030 - carpel , PO:0009010 - seed , PO:0009049 - inflorescence 
24320	FLZ5	OsFLZ5	FCS-LIKE ZINC FINGER PROTEIN 5		FCS-LIKE ZINC FINGER PROTEIN 5		2	CT841776 (Oryza rufipogon).	 Tolerance and resistance - Stress tolerance	Os02g0592833	LOC_Os02g37970.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0009049 - inflorescence 
24321	FLZ6	OsFLZ6	FCS-LIKE ZINC FINGER PROTEIN 6		FCS-LIKE ZINC FINGER PROTEIN 6		2		 Tolerance and resistance - Stress tolerance	Os02g0686800	LOC_Os02g46180.1				GO:0005634 - nucleus, GO:0009413 - response to flooding, GO:0005737 - cytoplasm	TO:0000524 - submergence tolerance	PO:0009066 - anther 
24322	FLZ7	OsFLZ7	FCS-LIKE ZINC FINGER PROTEIN 7		FCS-LIKE ZINC FINGER PROTEIN 7		2			Os02g0687100	LOC_Os02g46190.1						
24323	FLZ8	OsFLZ8	FCS-LIKE ZINC FINGER PROTEIN 8		FCS-LIKE ZINC FINGER PROTEIN 8		2			Os02g0687200	LOC_Os02g46210.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding		
24324	FLZ9	OsFLZ9	FCS-LIKE ZINC FINGER PROTEIN 9		FCS-LIKE ZINC FINGER PROTEIN 9		2			Os02g0751300	LOC_Os02g51550.1						PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009009 - plant embryo , PO:0009010 - seed , PO:0009030 - carpel , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009089 - endosperm 
24325	FLZ10	OsFLZ10	FCS-LIKE ZINC FINGER PROTEIN 10		FCS-LIKE ZINC FINGER PROTEIN 10		3	GO:1990005: granular vesicle.	 Tolerance and resistance - Stress tolerance	Os03g0183500	LOC_Os03g08520.1				GO:0034059 - response to anoxia, GO:0009413 - response to flooding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0009507 - chloroplast	TO:0000524 - submergence tolerance, TO:0000015 - oxygen sensitivity	PO:0009006 - shoot system 
24326	FLZ11	OsFLZ11	FCS-LIKE ZINC FINGER PROTEIN 11		FCS-LIKE ZINC FINGER PROTEIN 11		3		 Tolerance and resistance - Stress tolerance	Os03g0665200	LOC_Os03g46260.3, LOC_Os03g46260.2, LOC_Os03g46260.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0034059 - response to anoxia, GO:0009413 - response to flooding	TO:0000015 - oxygen sensitivity, TO:0000524 - submergence tolerance	PO:0009009 - plant embryo , PO:0009010 - seed , PO:0009030 - carpel , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009089 - endosperm , PO:0009006 - shoot system 
24327	FLZ12	OsFLZ12	FCS-LIKE ZINC FINGER PROTEIN 12		FCS-LIKE ZINC FINGER PROTEIN 12		4			Os04g0585700	LOC_Os04g49620.1						PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009010 - seed , PO:0009030 - carpel , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009006 - shoot system 
24328	FLZ13	OsFLZ13	FCS-LIKE ZINC FINGER PROTEIN 13		FCS-LIKE ZINC FINGER PROTEIN 13		4			Os04g0585900	LOC_Os04g49650.2, LOC_Os04g49650.1						PO:0009066 - anther 
24329	FLZ15	OsFLZ15	FCS-LIKE ZINC FINGER PROTEIN 15		FCS-LIKE ZINC FINGER PROTEIN 15		4		 Tolerance and resistance - Stress tolerance	Os04g0586100	LOC_Os04g49670.1				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	
24330	FLZ16	OsFLZ16	FCS-LIKE ZINC FINGER PROTEIN 16		FCS-LIKE ZINC FINGER PROTEIN 16		4		 Tolerance and resistance - Stress tolerance	Os04g0586200	LOC_Os04g49680.1				GO:0008270 - zinc ion binding, GO:0034059 - response to anoxia, GO:0006355 - regulation of transcription, DNA-dependent	TO:0000015 - oxygen sensitivity	PO:0009066 - anther , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009010 - seed , PO:0009009 - plant embryo , PO:0009089 - endosperm 
24331	FLZ17	OsFLZ17	FCS-LIKE ZINC FINGER PROTEIN 17		FCS-LIKE ZINC FINGER PROTEIN 17		5			Os05g0180500	LOC_Os05g08800.1						
24332	FLZ19	OsFLZ19	FCS-LIKE ZINC FINGER PROTEIN 19		FCS-LIKE ZINC FINGER PROTEIN 19		6			Os06g0153100	LOC_Os06g05970.1						
24333	FLZ20	OsFLZ20	FCS-LIKE ZINC FINGER PROTEIN 20		FCS-LIKE ZINC FINGER PROTEIN 20		6		 Tolerance and resistance - Stress tolerance	Os06g0223700	LOC_Os06g11980.1				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	
24334	FLZ21	OsFLZ21	FCS-LIKE ZINC FINGER PROTEIN 21		FCS-LIKE ZINC FINGER PROTEIN 21		6		 Tolerance and resistance - Stress tolerance	Os06g0251500	LOC_Os06g14070.1				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	
24335	FLZ22	OsFLZ22	FCS-LIKE ZINC FINGER PROTEIN 22		FCS-LIKE ZINC FINGER PROTEIN 22		6		 Tolerance and resistance - Stress tolerance	Os06g0714800	LOC_Os06g50080.1				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	PO:0009030 - carpel , PO:0009089 - endosperm , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009009 - plant embryo , PO:0009010 - seed 
24336	FLZ24	OsFLZ24	FCS-LIKE ZINC FINGER PROTEIN 24		FCS-LIKE ZINC FINGER PROTEIN 24		8		 Tolerance and resistance - Stress tolerance	Os08g0407600	LOC_Os08g31510.1				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	
24337	FLZ25	OsFLZ25	FCS-LIKE ZINC FINGER PROTEIN 25		FCS-LIKE ZINC FINGER PROTEIN 25		8		 Tolerance and resistance - Stress tolerance	Os08g0451200	LOC_Os08g34984.1				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	
24338	FLZ26	OsFLZ26	FCS-LIKE ZINC FINGER PROTEIN 26		FCS-LIKE ZINC FINGER PROTEIN 26		9		 Tolerance and resistance - Stress tolerance	Os09g0367900	LOC_Os09g20240.2, LOC_Os09g20240.1				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	
24339	FLZ27	OsFLZ27	FCS-LIKE ZINC FINGER PROTEIN 27		FCS-LIKE ZINC FINGER PROTEIN 27		9		 Tolerance and resistance - Stress tolerance	Os09g0433800	LOC_Os09g26370.1				GO:0009413 - response to flooding, GO:0034059 - response to anoxia, GO:0005737 - cytoplasm, GO:0005634 - nucleus	TO:0000015 - oxygen sensitivity, TO:0000524 - submergence tolerance	PO:0025034 - leaf , PO:0009066 - anther , PO:0009010 - seed , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009006 - shoot system , PO:0009030 - carpel , PO:0009049 - inflorescence 
24340	FLZ28	OsFLZ28	FCS-LIKE ZINC FINGER PROTEIN 28		FCS-LIKE ZINC FINGER PROTEIN 28		10		 Tolerance and resistance - Stress tolerance	Os10g0422600	LOC_Os10g28680.1				GO:0034059 - response to anoxia	TO:0000015 - oxygen sensitivity	
24341	FLZ29	OsFLZ29	FCS-LIKE ZINC FINGER PROTEIN 29		FCS-LIKE ZINC FINGER PROTEIN 29		11			Os11g0659200	LOC_Os11g43790.1						PO:0009009 - plant embryo 
24342	_		_				6	a beta tubulin, autoregulation binding-site-domain- containing protein. a candidate chilling-tolerance gene.	 Tolerance and resistance - Stress tolerance	Os06g0495700	LOC_Os06g30020.1				GO:0009414 - response to water deprivation, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0034470 - ncRNA processing, GO:0071013 - catalytic step 2 spliceosome, GO:0005654 - nucleoplasm, GO:0009413 - response to flooding	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	
24343	_		_				3	a protein similar to peptide chain release factor 2. a candidate chilling-tolerance gene.	 Tolerance and resistance - Stress tolerance	Os03g0305700	LOC_Os03g19300.1				GO:0009409 - response to cold, GO:0016149 - translation release factor activity, codon specific, GO:0005737 - cytoplasm	TO:0000303 - cold tolerance	
24344	UCIP4	OsUCIP4, OsRING14, RING14	UBC26 INTERACT PROTEIN 4	OsUBC26 Interact Protein 4, RING-type E3 ubiquitin ligase 14	UBC26 INTERACT PROTEIN 4		9		 Biochemical character	Os09g0511500	LOC_Os09g33670.1				GO:0004842 - ubiquitin-protein ligase activity		
24345	UCIP5	OsUCIP5	UBC26 INTERACT PROTEIN 5	OsUBC26 Interact Protein 5	UBC26 INTERACT PROTEIN 5		12			Os12g0586300	LOC_Os12g39640.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		
24346	UCIP9	OsUCIP9	UBC26 INTERACT PROTEIN 9	OsUBC26 Interact Protein 9	UBC26 INTERACT PROTEIN 9		4			Os04g0411800	LOC_Os04g33590.2, LOC_Os04g33590.1						
24347	UCIP11	OsUCIP11	UBC26 INTERACT PROTEIN 11	OsUBC26 Interact Protein 11	UBC26 INTERACT PROTEIN 11		3			Os03g0856500	LOC_Os03g63950.2, LOC_Os03g63950.1				GO:0005840 - ribosome, GO:0006417 - regulation of translation, GO:0022627 - cytosolic small ribosomal subunit, GO:0044238 - primary metabolic process, GO:0045900 - negative regulation of translational elongation, GO:0043022 - ribosome binding, GO:0043024 - ribosomal small subunit binding, GO:0003729 - mRNA binding		
24348	UCIP12	OsUCIP12	UBC26 INTERACT PROTEIN 12	OsUBC26 Interact Protein 12	UBC26 INTERACT PROTEIN 12		12	GO:0071705: nitrogen compound transport.	 Biochemical character	Os12g0502800	LOC_Os12g31850.4, LOC_Os12g31850.3, LOC_Os12g31850.2, LOC_Os12g31850.1				GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0015505 - uracil:cation symporter activity, GO:0005274 - allantoin uptake transmembrane transporter activity		
24349	UCIP13	OsUCIP13	UBC26 INTERACT PROTEIN 13	OsUBC26 Interact Protein 13	UBC26 INTERACT PROTEIN 13		10		 Biochemical character	Os10g0413500	LOC_Os10g27340.2				GO:0018401 - peptidyl-proline hydroxylation to 4-hydroxy-L-proline, GO:0004656 - procollagen-proline 4-dioxygenase activity, GO:0005506 - iron ion binding, GO:0031418 - L-ascorbic acid binding, GO:0005789 - endoplasmic reticulum membrane, GO:0005783 - endoplasmic reticulum		
24350	UCIP15	OsUCIP15	UBC26 INTERACT PROTEIN 15	OsUBC26 Interact Protein 15	UBC26 INTERACT PROTEIN 15		5	GO:2000031: regulation of salicylic acid mediated signaling pathway.	 Tolerance and resistance	Os05g0557400	LOC_Os05g48360.2, LOC_Os05g48360.1				GO:0006952 - defense response, GO:0009626 - plant-type hypersensitive response, GO:0012501 - programmed cell death, GO:0009863 - salicylic acid mediated signaling pathway		
24351	UCIP16	OsUCIP16	UBC26 INTERACT PROTEIN 16	OsUBC26 Interact Protein 16	UBC26 INTERACT PROTEIN 16		8	Q6YZM6.	 Biochemical character	Os08g0357000	LOC_Os08g26870.5, LOC_Os08g26870.4, LOC_Os08g26870.3, LOC_Os08g26870.2, LOC_Os08g26870.1				GO:0004518 - nuclease activity, GO:0016567 - protein ubiquitination, GO:0005634 - nucleus, GO:0030891 - VCB complex		
24352	GRRP	OsGRRP	GROWTH REGULATOR-RELATED PROTEIN	growth regulator-related protein	GROWTH REGULATOR-RELATED PROTEIN		3	the Candidate Gene of qPL3-7 (a QTL for panicle length) (Bai et al. 2021).	 Biochemical character	Os03g0169000	LOC_Os03g07310.1				GO:0005737 - cytoplasm, GO:0006004 - fucose metabolic process, GO:0016740 - transferase activity, GO:0016021 - integral to membrane		
24353	HB22	OsHB22	HOMEOBOX PROTEIN 22	homeobox protein 22, homeodomain transcription factor OsHB22	HOMEOBOX PROTEIN 22		3	a gene of interest in qPL3-3 (a QTL for panicle length) (Bai et al. 2021). GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific. GO:2000070: regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance	Os03g0124000	LOC_Os03g03260.1				GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0005634 - nucleus	TO:0000276 - drought tolerance	
24354	_		_	OsNodulin, Nodulin			1		 Tolerance and resistance - Stress tolerance	Os01g0825500	LOC_Os01g61010.2, LOC_Os01g61010.1				GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
24355	_		_	expressed protein			1		 Tolerance and resistance - Stress tolerance	Os01g0869000	LOC_Os01g64870.1				GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
24356	_		_	expressed protein			1		 Tolerance and resistance - Stress tolerance	Os01g0899500	LOC_Os01g67370.5, LOC_Os01g67370.4, LOC_Os01g67370.3, LOC_Os01g67370.2, LOC_Os01g67370.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
24357	_		_	expressed protein			1		 Tolerance and resistance - Stress tolerance	Os01g0962100	LOC_Os01g73110.1				GO:0016021 - integral to membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
24358	WAK5	OsWAK5	WALL-ASSOCIATED KINASE 5		WALL-ASSOCIATED KINASE 5		1		 Biochemical character	Os01g0364100	LOC_Os01g26174.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0007166 - cell surface receptor linked signal transduction, GO:0030247 - polysaccharide binding, GO:0005509 - calcium ion binding, GO:0005524 - ATP binding		
24359	SDN1	OsSDN1	SMALL RNA DEGRADING NUCLEASE 1		SMALL RNA DEGRADING NUCLEASE 1		4	the rice ortholog of Arabidopsis SDN1.		Os04g0650600	LOC_Os04g55700.1				GO:0004527 - exonuclease activity, GO:0003676 - nucleic acid binding, GO:0005634 - nucleus		
24360	DDL	OsDDL	DAWDLE				5	a putative rice orthologue of Arabidopsis DDL. Os05g0546600 (International Rice Genome Sequencing Project, 2005)  in Borna et al. 2022.		Os05g0546600							
24361	PTD1	OsPTD1	POLLEN TUBE DEVELOPMENT GENE 1	pollen tube development gene 1	POLLEN TUBE DEVELOPMENT PROTEIN 1		5	highly homologous to tobacco ascorbate acid oxidase NPT303.	 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0485800	LOC_Os05g40740.3, LOC_Os05g40740.2, LOC_Os05g40740.1				GO:0016491 - oxidoreductase activity, GO:0016021 - integral to membrane, GO:0046658 - anchored to plasma membrane, GO:0009846 - pollen germination, GO:0048868 - pollen tube development, GO:0009860 - pollen tube growth, GO:0005507 - copper ion binding	TO:0000437 - male sterility	PO:0001017 - M germinated pollen stage 
24362	CYP81L6	OsCYP81L6	P-450 81L6	Cytochrome P450 81L6	CYTOCHROME P450 81L6		2		 Biochemical character,  Tolerance and resistance - Disease resistance	Os02g0504000	LOC_Os02g30110.1				GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
24363	_		_	WD40-repeat transcription factor			11		 Coloration - Anthocyanin,  Vegetative organ - Leaf	Os11g0132700	LOC_Os11g03794.1				GO:0006913 - nucleocytoplasmic transport, GO:0031540 - regulation of anthocyanin biosynthetic process	TO:0000326 - leaf color	
24364	2R_MYB76	Os2R_MYB76	R2R3-MYB TRANSCRIPTION FACTOR 76	MYB transcription factor, R2R3-MYB Transcription Factor 76	R2R3-MYB TRANSCRIPTION FACTOR 76		8		 Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Vegetative organ - Leaf	Os08g0428200	LOC_Os08g33150.1				GO:0003677 - DNA binding, GO:0046686 - response to cadmium ion, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0009414 - response to water deprivation	TO:0000326 - leaf color, TO:0000276 - drought tolerance	
24365	IQM1	OsIQM1	IQ MOTIF CONTAINING PROTEIN 1	IQ motif containing protein 1	IQ MOTIF CONTAINING PROTEIN 1		1	orthologous to Brachypodium distachyon Bd2g41490. PO:0030123: panicle inflorescence.		Os01g0570800	LOC_Os01g38980.2, LOC_Os01g38980.1				GO:0005829 - cytosol, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0020148 - shoot apical meristem , PO:0009005 - root , PO:0025034 - leaf , PO:0000037 - shoot apex , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
24366	IQM3	OsIQM3	IQ MOTIF CONTAINING PROTEIN 3	IQ motif containing protein 3	IQ MOTIF CONTAINING PROTEIN 3		3		 Tolerance and resistance - Stress tolerance	Os03g0374500	LOC_Os03g25760.1				GO:0009753 - response to jasmonic acid stimulus, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009047 - stem 
24367	IQM4	OsIQM4	IQ MOTIF CONTAINING PROTEIN 4	IQ motif containing protein 4	IQ MOTIF CONTAINING PROTEIN 4		5	orthologous to Brachypodium distachyon Bd2g33150.		Os05g0197300	LOC_Os05g10840.2, LOC_Os05g10840.1				GO:0009737 - response to abscisic acid stimulus, GO:0005829 - cytosol, GO:0009753 - response to jasmonic acid stimulus, GO:0005634 - nucleus	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009047 - stem 
24368	IQM7	OsIQM7	IQ MOTIF CONTAINING PROTEIN 7	IQ motif containing protein 7	IQ MOTIF CONTAINING PROTEIN 7		11		 Tolerance and resistance - Stress tolerance	Os11g0151002	LOC_Os11g05340.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root 
24369	IQM8	OsIQM8	IQ MOTIF CONTAINING PROTEIN 8	IQ motif containing protein 8	IQ MOTIF CONTAINING PROTEIN 8		12	orthologous to Brachypodium distachyon Bd4g42560.	 Tolerance and resistance - Stress tolerance	Os12g0149900	LOC_Os12g05420.1				GO:0006970 - response to osmotic stress, GO:0005829 - cytosol, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0009753 - response to jasmonic acid stimulus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009047 - stem , PO:0009005 - root 
24370	MYB50	OsMYB50	MYB TRANSCRIPTION FACTOR 50		MYB TRANSCRIPTION FACTOR 50		4	GO:0000974: Prp19 complex.	 Tolerance and resistance - Stress tolerance,  Other	Os04g0348300	LOC_Os04g28090.1				GO:0005634 - nucleus, GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0005681 - spliceosomal complex, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0003677 - DNA binding, GO:0009408 - response to heat, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	PO:0009049 - inflorescence , PO:0009009 - plant embryo 
24371	2R_MYB49	OsMYB58, MYB58, Os2R_MYB49	R2R3-MYB TRANSCRIPTION FACTOR 49	MYB TRANSCRIPTION FACTOR 58, R2R3-MYB Transcription Factor 49	R2R3-MYB TRANSCRIPTION FACTOR 49		4	Q0JB89.	 Other	Os04g0549500	LOC_Os04g46384.1				GO:0003677 - DNA binding, GO:0005634 - nucleus		
24372	_		_	Glutathione S-transferase C-terminal domain containing protein			9	the candidate gene for qTGW9 (QTL for thousand-grain weight).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0544400	LOC_Os09g37240.1				GO:0043295 - glutathione binding, GO:0004364 - glutathione transferase activity, GO:0005737 - cytoplasm, GO:0009636 - response to toxin		
24373	_		_	Methionyl-tRNA synthetase			10	one of the candidate genes for qGL10 (QTL for grain length).	 Biochemical character	Os10g0400100	LOC_Os10g26050.4, LOC_Os10g26050.3, LOC_Os10g26050.2, LOC_Os10g26050.1				GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0006418 - tRNA aminoacylation for protein translation, GO:0006431 - methionyl-tRNA aminoacylation, GO:0004825 - methionine-tRNA ligase activity, GO:0005524 - ATP binding		
24374	_	AAO	_	aldehyde oxidase			3			Os03g0798101	LOC_Os03g58380.1				GO:0016491 - oxidoreductase activity, GO:0005506 - iron ion binding		
24375	GSN5	qGSN5, OsGSN5	GRAIN SIZE AND GRAIN NUMBER 5	grain size and grain number 5	GRAIN SIZE AND GRAIN NUMBER 5		5	a P-type pentatricopeptide repeat protein. the most likely candidate gene for qGSN5. TO:0001076: infructescence development trait.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os05g0548600	LOC_Os05g47510.1				GO:0042127 - regulation of cell proliferation	TO:0002759 - grain number, TO:0000397 - grain size	
24376	S1FA1	OsS1Fa1	SITE 1 BINDING FACTOR A1	site 1 binding factor a1	SITE 1 BINDING FACTOR A1		4	P42553. a homolog of spinach S1Fa.	 Other,  Tolerance and resistance - Stress tolerance	Os04g0408900	LOC_Os04g33420.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009047 - stem , PO:0009005 - root 
24377	RLR4	OsRLR4, OsFYVE09, FYVE09, OsFYVE9, FYVE9	ROOT LENGTH REGULATOR 4	root length regulator 4, FYVE Domain-containing protein 09	ROOT LENGTH REGULATOR 4	osrlr4-1, osrlr4-2	4	one of five members of the PRAF subfamily of the regulator chromosome condensation 1 (RCC1) family. GO: 1905437: positive regulation of histone H3-K4 trimethylation. TO:0020103: adventitious root length. TO:0020106: Indole-3-acetic acid content.	 Vegetative organ - Root	Os04g0686200	LOC_Os04g58960.1				GO:0080022 - primary root development, GO:0005634 - nucleus, GO:0010449 - root meristem growth, GO:0046872 - metal ion binding, GO:0010071 - root meristem specification, GO:0005886 - plasma membrane, GO:0009733 - response to auxin stimulus	TO:0000656 - root development trait, TO:0002672 - auxin content, TO:0000163 - auxin sensitivity, TO:0000227 - root length	PO:0009005 - root , PO:0020127 - primary root , PO:0020121 - lateral root , PO:0020124 - root stele , PO:0007520 - root development stage , PO:0005029 - root primordium , PO:0000025 - root tip 
24378	MFAP1	OsMFAP1	MICROFIBRILLAR-ASSOCIATED PROTEIN 1	microfibrillar-associated protein 1	MICROFIBRILLAR-ASSOCIATED PROTEIN 1	mfap1, mfap1-1, mfap1-2	6	the targets of miR1871. GO:0140426: PAMP-triggered immunity signalling pathway. PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Vegetative organ - Culm,  Other	Os06g0335101	LOC_Os06g22850.2				GO:0002679 - respiratory burst during defense response, GO:0002237 - response to molecule of bacterial origin, GO:0050832 - defense response to fungus, GO:0002238 - response to molecule of fungal origin, GO:0052542 - callose deposition during defense response	TO:0000074 - blast disease, TO:0000590 - grain weight, TO:0002759 - grain number, TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0006032 - panicle size, TO:0000449 - grain yield per plant, TO:0000396 - grain yield, TO:0000152 - panicle number, TO:0000605 - hydrogen peroxide content, TO:0000346 - tiller number, TO:0000371 - yield trait	PO:0020142 - stem internode , PO:0025034 - leaf , PO:0009049 - inflorescence 
24379	CaML2	OsCaML2	CALMODULIN-LIKE PROTEIN 2	Calmodulin-like protein 2	CALMODULIN-LIKE PROTEIN 2		3	a target gene of osa-miR1432. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance	Os03g0812400	LOC_Os03g59770.1				GO:0005737 - cytoplasm, GO:0005509 - calcium ion binding, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24380	HPGT3	OsHPGT3	HYP-GALACTOSYLTRANSFERASE 3	Hyp-galactosyltransferase 3	HYP-GALACTOSYLTRANSFERASE 3		6		 Biochemical character	Os06g0176200	LOC_Os06g07905.2, LOC_Os06g07905.1				GO:0008378 - galactosyltransferase activity, GO:0016021 - integral to membrane, GO:0016758 - transferase activity, transferring hexosyl groups, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008194 - UDP-glycosyltransferase activity, GO:0006486 - protein amino acid glycosylation, GO:0000139 - Golgi membrane		
24381	POST	OsPOST	POLLEN STERILITY				7		 Seed - Morphological traits - Grain shape,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os07g0175300	LOC_Os07g07900.2, LOC_Os07g07900.1				GO:0043067 - regulation of programmed cell death, GO:0009555 - pollen development, GO:0019222 - regulation of metabolic process, GO:0010208 - pollen wall assembly, GO:0051782 - negative regulation of cell division	TO:0000053 - pollen sterility, TO:0000397 - grain size, TO:0000079 - lemma and palea anatomy and morphology trait, TO:0000218 - pollen abortion type, TO:0000639 - seed fertility	PO:0020048 - microspore , PO:0025313 - tapetum , PO:0001007 - pollen development stage 
24382	OVP3	OsOVP3	VACUOLAR H+-PYROPHOSPHATASE 3	vacuolar H+-pyrophosphatase 3, V-PPase 3, class III V-PPase	VACUOLAR H+-PYROPHOSPHATASE 3		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0802500	LOC_Os02g55890.1				GO:0004427 - inorganic diphosphatase activity, GO:0034059 - response to anoxia, GO:0009678 - hydrogen-translocating pyrophosphatase activity, GO:0016021 - integral to membrane	TO:0000015 - oxygen sensitivity	
24383	WIH2	OsWIH2	WINDHOSE 2	WINDHOSE2			3	GO:1902584: positive regulation of response to water deprivation.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0431100	LOC_Os03g31679.1				GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0030104 - water homeostasis, GO:0010025 - wax biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance	
24384	LCD1	OsLCD1	L-CYSTEINE DESULFHYDRASE 1	L-cysteine desulfhydrase 1	L-CYSTEINE DESULFHYDRASE 1		1	Q9LGZ2. GO:0080146: L-cysteine desulfhydrase activity. GO:2000070: regulation of response to water deprivation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0290100	LOC_Os01g18640.2, LOC_Os01g18640.1				GO:0009738 - abscisic acid mediated signaling, GO:0070814 - hydrogen sulfide biosynthetic process, GO:0009414 - response to water deprivation, GO:0019448 - L-cysteine catabolic process	TO:0000495 - chlorophyll content, TO:0000276 - drought tolerance	
24385	MORE1A	OsMORE1a	MAGNAPORTHE ORYZAE RESISTANCE 1A	Magnaporthe oryzae resistance 1a			3		 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0201500	LOC_Os03g10440.1				GO:0050832 - defense response to fungus, GO:0000272 - polysaccharide catabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000074 - blast disease	
24386	MORE1B	OsMORE1b	MAGNAPORTHE ORYZAE RESISTANCE 1B	Magnaporthe oryzae resistance 1b			3		 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0201901	LOC_Os03g10478.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0000272 - polysaccharide catabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
24387	MORE1D	OsMORE1d	MAGNAPORTHE ORYZAE RESISTANCE 1D	Magnaporthe oryzae resistance 1d			3		 Biochemical character	Os03g0201800	LOC_Os03g10469.2, LOC_Os03g10469.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0000272 - polysaccharide catabolic process		
24388	MORE1E	OsMORE1e	MAGNAPORTHE ORYZAE RESISTANCE 1E	Magnaporthe oryzae resistance 1e			5		 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0304900/Os05g0305000	LOC_Os05g23924.2, LOC_Os05g23924.1				GO:0000272 - polysaccharide catabolic process, GO:0050832 - defense response to fungus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000074 - blast disease	
24389	MORE1F	OsMORE1f	MAGNAPORTHE ORYZAE RESISTANCE 1F	Magnaporthe oryzae resistance 1f			3		 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0243700	LOC_Os03g14010.3, LOC_Os03g14010.2, LOC_Os03g14010.1				GO:0050832 - defense response to fungus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0000272 - polysaccharide catabolic process	TO:0000074 - blast disease	
24390	MORE1G	OsMORE1g	MAGNAPORTHE ORYZAE RESISTANCE 1G	Magnaporthe oryzae resistance 1g			1		 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0134800	LOC_Os01g04290.1				GO:0000272 - polysaccharide catabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
24391	MORE1H	OsMORE1h	MAGNAPORTHE ORYZAE RESISTANCE 1H	Magnaporthe oryzae resistance 1h			1		 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0134900	LOC_Os01g04300.1				GO:0050832 - defense response to fungus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0000272 - polysaccharide catabolic process	TO:0000074 - blast disease	
24392	MORE1K	OsMORE1k	MAGNAPORTHE ORYZAE RESISTANCE 1K	Magnaporthe oryzae resistance 1k			5		 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0319900	LOC_Os05g25560.1				GO:0050832 - defense response to fungus, GO:0000272 - polysaccharide catabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000074 - blast disease	
24393	MORE1J	OsMORE1j	MAGNAPORTHE ORYZAE RESISTANCE 1J	Magnaporthe oryzae resistance 1j			5		 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0304000	LOC_Os05g23830.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0000272 - polysaccharide catabolic process	TO:0000074 - blast disease	
24394	MORE1L	OsMORE1l	MAGNAPORTHE ORYZAE RESISTANCE 1L	Magnaporthe oryzae resistance 1l			7		 Biochemical character	Os07g0456700	LOC_Os07g27320.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0000272 - polysaccharide catabolic process		
24395	MORE1C	OsMORE1c	MAGNAPORTHE ORYZAE RESISTANCE 1C	Magnaporthe oryzae resistance 1c			10		 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0351700	LOC_Os10g21110.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0000272 - polysaccharide catabolic process, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
24396	LTT7	OsLTT7	LOW-TEMPERATURE TOLERANCE 7	low-temperature tolerance 7			7		 Tolerance and resistance - Stress tolerance	Os07g0407700	LOC_ Os07g22494.4, LOC_ Os07g22494.3, LOC_ Os07g22494.2, LOC_ Os07g22494.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24397	SCYL2	OsSCYL2	SCY1-LIKE 2	SCY1-LIKE2		scyl2, scyl2-1, scyl2-2, scyl2-3, scyl2-4	1	PO:0030123: panicle inflorescence. TO:0000975: grain width. GO:0072583: clathrin-dependent endocytosis.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Coloration - Chlorophyll,  Character as QTL - Germination,  Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity	Os01g0616100	LOC_Os01g42950.2, LOC_Os01g42950.1				GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0005524 - ATP binding, GO:0009658 - chloroplast organization, GO:0006898 - receptor-mediated endocytosis, GO:0010728 - regulation of hydrogen peroxide biosynthetic process, GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium, GO:0010941 - regulation of cell death, GO:0009416 - response to light stimulus, GO:0016192 - vesicle-mediated transport, GO:0009755 - hormone-mediated signaling, GO:0043408 - regulation of MAPKKK cascade, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0005794 - Golgi apparatus, GO:0045088 - regulation of innate immune response, GO:0030136 - clathrin-coated vesicle, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009845 - seed germination, GO:0005802 - trans-Golgi network, GO:0004672 - protein kinase activity	TO:0000592 - 1000-dehulled grain weight, TO:0000399 - grain thickness, TO:0000075 - light sensitivity, TO:0000734 - grain length, TO:0000455 - seed set percent, TO:0000447 - filled grain number, TO:0000166 - gibberellic acid sensitivity, TO:0000325 - soluble protein content, TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000207 - plant height, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000175 - bacterial blight disease resistance, TO:0000315 - bacterial disease resistance, TO:0000316 - photosynthetic ability, TO:0000063 - mimic response, TO:0002667 - abscisic acid content, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0007057 - 0 seed germination stage , PO:0009047 - stem , PO:0009049 - inflorescence 
24398	VTI11	OsVTI11	VESICLE TRANSPORT THROUGH T-SNARE INTERACTION 11	Vesicle Transport through t-SNARE Interaction11			1			Os01g0560200	LOC_Os01g37980.1				GO:0031902 - late endosome membrane, GO:0000149 - SNARE binding, GO:0006906 - vesicle fusion, GO:0006886 - intracellular protein transport, GO:0031201 - SNARE complex, GO:0012507 - ER to Golgi transport vesicle membrane, GO:0016192 - vesicle-mediated transport, GO:0005789 - endoplasmic reticulum membrane, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0005484 - SNAP receptor activity		
24399	VTI12	OsVTI12	VESICLE TRANSPORT THROUGH T-SNARE INTERACTION 12	Vesicle Transport through t-SNARE Interaction12			1			Os01g0707300	LOC_Os01g51120.2, LOC_Os01g51120.1				GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport, GO:0005794 - Golgi apparatus, GO:0016021 - integral to membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0031902 - late endosome membrane, GO:0000149 - SNARE binding, GO:0031201 - SNARE complex, GO:0012507 - ER to Golgi transport vesicle membrane, GO:0005484 - SNAP receptor activity, GO:0006906 - vesicle fusion		
24400	S57		HYBRID SPIKELET STERILITY 57			S57-j, S57-s	1	An egg-killer gene for the hybrid seed sterility phenomenon found in the progeny of the cross between O. sativa and O. meridionalis. S57 is located in the 430.6 kb chromosomal region encompassed by the two DNA markers KGC1_1.24 and KGC1_.67 (Ichitani et al. 2022). S57-s (O. sativa allele), S57-j (O. meridionais strain Jpn2 allele).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000436 - spikelet sterility, TO:0000036 - hybrid incompatibility, TO:0000358 - female sterility, TO:0000639 - seed fertility	
24401	SDV1	OsSDV1	SEED DEVELOPMENT 1			Sdv1-s, Sdv1-m	6	a recessive lethal gene SDV1 causing abortion at the seed developmental stage was shown to be located between two DNA markers, KGC6_10.09 and KGC6_22.19 on chromosome 6 of W1297 (Toyomoto et al. 2019). Sdv1-s (O. sativa allele), sdv1-m (O. meridionalis allele).	 Seed,  Reproductive organ - Pollination, fertilization, fertility - Segregation distortion						GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000639 - seed fertility, TO:0000036 - hybrid incompatibility	PO:0001170 - seed development stage 
24402	CYB5-1	OsCYB5-1	CYTOCHROME B5-1	cytochrome b5-1	CYTOCHROME B5-1		12		 Biochemical character	Os12g0223300	LOC_Os12g12170.2, LOC_Os12g12170.1				GO:0016020 - membrane, GO:0046872 - metal ion binding, GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle		
24403	CYB5-2	OsCYB5-2	CYTOCHROME B5-2	cytochrome b5-2	CYTOCHROME B5-2		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0518200	LOC_Os10g37420.2, LOC_Os10g37420.1				GO:0016020 - membrane, GO:0030007 - cellular potassium ion homeostasis, GO:0006883 - cellular sodium ion homeostasis, GO:0002028 - regulation of sodium ion transport, GO:0043266 - regulation of potassium ion transport, GO:0009651 - response to salt stress, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0016021 - integral to membrane, GO:0043231 - intracellular membrane-bounded organelle	TO:0006001 - salt tolerance	
24404	CYB5-3	OsCYB5-3	CYTOCHROME B5-3	cytochrome b5-3	CYTOCHROME B5-3		1		 Biochemical character	Os01g0971500	LOC_Os01g73990.1				GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0046872 - metal ion binding, GO:0043231 - intracellular membrane-bounded organelle		
24405	CYB5-5	OsCYB5-5	CYTOCHROME B5-5	cytochrome b5-5	CYTOCHROME B5-5		2		 Biochemical character	Os02g0649800	LOC_Os02g43360.1				GO:0020037 - heme binding, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0046872 - metal ion binding, GO:0043231 - intracellular membrane-bounded organelle		
24406	CYB5-6	OsCYB5-6	CYTOCHROME B5-6	cytochrome b5-6	CYTOCHROME B5-6		8		 Biochemical character	Os08g0386300	LOC_Os08g29669.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0046872 - metal ion binding		
24407	CYB5-7	OsCYB5-7	CYTOCHROME B5-7	cytochrome b5-7	CYTOCHROME B5-7		9		 Biochemical character	Os09g0334600	LOC_Os09g16520.1				GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0043231 - intracellular membrane-bounded organelle, GO:0020037 - heme binding		
24408	CYB5-8	OsCYB5-8	CYTOCHROME B5-8	cytochrome b5-8	CYTOCHROME B5-8		3		 Biochemical character	Os03g0205500	LOC_Os03g10790.1				GO:0012505 - endomembrane system, GO:0016020 - membrane		
24409	CYB5-10	OsCYB5-10	CYTOCHROME B5-10	cytochrome b5-10	CYTOCHROME B5-10		3		 Biochemical character	Os03g0321000	LOC_Os03g20470.2, LOC_Os03g20470.1				GO:0016020 - membrane, GO:0012505 - endomembrane system, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane		
24410	CYB5-11	OsCYB5-11, Oscb5, cb5	CYTOCHROME B5-11	cytochrome b5-11, Cytochrome b5-like Heme/Steroid binding domain containing protein	CYTOCHROME B5-11		2		 Biochemical character	Os02g0640300	LOC_Os02g42740.1				GO:0005783 - endoplasmic reticulum, GO:0007584 - response to nutrient, GO:0016020 - membrane, GO:0012505 - endomembrane system, GO:0016021 - integral to membrane	TO:0000480 - nutrient sensitivity	
24411	CYB5-14	OsCYB5-14	CYTOCHROME B5-14	cytochrome b5-14	CYTOCHROME B5-14		7		 Biochemical character	Os07g0232200	LOC_Os07g12830.3, LOC_Os07g12830.2, LOC_Os07g12830.1				GO:0046872 - metal ion binding, GO:0005829 - cytosol, GO:0020037 - heme binding		
24412	FEB2	OsFEB2	FERTILIZATION BARRIER 2	Fertilization barrier 2			11	GO:0080173: male-female gamete recognition during double fertilization forming a zygote and endosperm.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ	Os11g0168000           	LOC_Os11g06730.1				GO:0009566 - fertilization, GO:0009567 - double fertilization forming a zygote and endosperm	TO:0000455 - seed set percent	
24413	FEB3	OsFEB3	FERTILIZATION BARRIER 3	Fertilization barrier 3			12	GO:0080173: male-female gamete recognition during double fertilization forming a zygote and endosperm.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ	Os12g0167601           	LOC_Os12g06970.1				GO:0009567 - double fertilization forming a zygote and endosperm, GO:0009566 - fertilization	TO:0000455 - seed set percent	
24414	DCET1	OsDCET1	DEFECTIVE IN CALLOSE, EXINE AND TAPETUM 1	"\"defective in callose, exine and tapetum1\""		dcet1, dcet1-2	8	RNA recognition motif (RRM)-containing family. ribonucleoprotein (RNP) domain or RNA-binding domain (RBD) protein. the closest homolog of Arabidopsis CID-like proteins. TO: 1000022: anther morphology trait. TO:0000754: cardinal organ part morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0116400	LOC_Os08g02330.1				GO:0043067 - regulation of programmed cell death, GO:0010208 - pollen wall assembly, GO:0009555 - pollen development, GO:0048653 - anther development, GO:0010584 - pollen exine formation, GO:0052543 - callose deposition in cell wall, GO:0003723 - RNA binding, GO:0080110 - sporopollenin biosynthetic process, GO:0048658 - tapetal layer development, GO:0009556 - microsporogenesis, GO:0046890 - regulation of lipid biosynthetic process	TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility, TO:0000437 - male sterility, TO:0000421 - pollen fertility, TO:0000187 - anther color, TO:0000531 - anther length	PO:0001004 - anther development stage , PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0001007 - pollen development stage , PO:0009066 - anther 
24415	SUR1	OsSUR1	SUGAR-UP-REGULATED-1	sugar-up-regulated-1			9	C98373. GO:1905582: response to mannose.		Os09g0482800	LOC_Os09g30490.1				GO:0009744 - response to sucrose stimulus, GO:0005509 - calcium ion binding, GO:0009749 - response to glucose stimulus, GO:0009750 - response to fructose stimulus, GO:0009747 - hexokinase-dependent signaling, GO:0042594 - response to starvation		PO:0020142 - stem internode , PO:0009009 - plant embryo 
24416	UGT85E1	OsUGT85E1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 85E1	Uridine diphosphate-dependent glycosyltransferase 85E1, UDP-dependent glycosyltransferase 85E1	UDP-DEPENDENT GLYCOSYLTRANSFERASE 85E1	ugt85e1	2	GO:0090332: stomatal closure. GO:0072593: reactive oxygen species metabolic process.	 Vegetative organ - Root,  Biochemical character,  Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0755500	LOC_Os02g51900.1				GO:0010115 - regulation of abscisic acid biosynthetic process, GO:0006979 - response to oxidative stress, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0008194 - UDP-glycosyltransferase activity, GO:0080044 - quercetin 7-O-glucosyltransferase activity, GO:0080043 - quercetin 3-O-glucosyltransferase activity	TO:0000276 - drought tolerance, TO:0000340 - total soluble sugar content, TO:0000333 - sugar content, TO:0006002 - proline content, TO:0000520 - stomatal closure rate, TO:0002667 - abscisic acid content, TO:0000131 - leaf water potential, TO:0002657 - oxidative stress, TO:0000605 - hydrogen peroxide content, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity	
24417	CSL1	OsCSL1, MKKK22, OsMKKK22	CHLOROSIS SEEDLING LETHALITY 1	chlorosis seedling lethality 1, MAPK kinase kinase22	MAPK KINASE KINASE 22	csl1	3	GO:0120305: regulation of pigmentation. TO: 0006060: leaf chlorosis.	 Vegetative organ - Leaf,  Coloration - Chlorophyll,  Biochemical character	Os03g0703400	LOC_Os03g49640.2, LOC_Os03g49640.1				GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009658 - chloroplast organization, GO:0005783 - endoplasmic reticulum, GO:0043473 - pigmentation	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content	
24418	BIC1	OsBIC1	BLUE-LIGHT INHIBITOR OF CRYPTOCHROME 1	Blue-light Inhibitor of Cryptochrome 1		Osbic1-1, Osbic1-2	4		 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os04g0412100	LOC_Os04g33610.1				GO:0009785 - blue light signaling pathway, GO:0009740 - gibberellic acid mediated signaling, GO:0009637 - response to blue light, GO:0051510 - regulation of unidimensional cell growth	TO:0002689 - leaf sheath length, TO:0000159 - blue light sensitivity, TO:0002675 - gibberellic acid content	
24419	BIC2	OsBIC2	BLUE-LIGHT INHIBITOR OF CRYPTOCHROME 2	Blue-light Inhibitor of Cryptochrome 2			2	CT837761.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0532800	LOC_Os02g32990.1				GO:0009637 - response to blue light, GO:0009785 - blue light signaling pathway	TO:0000159 - blue light sensitivity, TO:0002689 - leaf sheath length	
24420	SBF1	OsSBF1	SODIUM/BILE ACID TRANSPORTER 1	sodium/bile acid transporter 1	SODIUM/BILE ACID TRANSPORTER 1		1	Q5VRB2.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0645200	LOC_Os01g45750.1				GO:0009941 - chloroplast envelope, GO:0015293 - symporter activity, GO:0016021 - integral to membrane, GO:0009413 - response to flooding, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000173 - ethylene sensitivity, TO:0000524 - submergence tolerance, TO:0000166 - gibberellic acid sensitivity	
24421	PAGN1	OsPAGN1, OsRING290, RING290	PLANT ARCHITECTURE AND GRAIN NUMBER 1	PLANT ARCHITECTURE and GRAIN NUMBER 1, RING-type E3 ubiquitin ligase 290		pagn1	7	TO:0000949: seedling growth and development trait.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os07g0421800	LOC_Os07g23970.1				GO:0044238 - primary metabolic process, GO:0009736 - cytokinin mediated signaling, GO:0044260 - cellular macromolecule metabolic process, GO:0048316 - seed development, GO:0009826 - unidimensional cell growth, GO:0005737 - cytoplasm	TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0002759 - grain number, TO:0002660 - cytokinin content, TO:0000357 - growth and development trait, TO:0000653 - seed development trait, TO:0000346 - tiller number, TO:0000447 - filled grain number, TO:0000396 - grain yield	PO:0007131 - seedling development stage , PO:0025034 - leaf , PO:0009066 - anther , PO:0009005 - root , PO:0001170 - seed development stage , PO:0009047 - stem 
24422	PGLP2	OsPGLP2	PHOSPHOGLYCOLATE PHOSPHATASE 2	Phosphoglycolate phosphatase 2	PHOSPHOGLYCOLATE PHOSPHATASE 2		9		 Biochemical character	Os09g0261300	LOC_Os09g08660.1				GO:0005737 - cytoplasm, GO:0016791 - phosphatase activity, GO:0008967 - phosphoglycolate phosphatase activity		PO:0009005 - root 
24423	DR1	OsDr1	_				8	AF464902. subunit of Dr1/DrAp1 repressor. rice Dr1 homolog. a structural homolog of the eukaryotic general repressors Dr1.	 Other	Os08g0383700 	LOC_Os08g29500.2, LOC_Os08g29500.1				GO:0046982 - protein heterodimerization activity, GO:0016564 - transcription repressor activity, GO:0005634 - nucleus		PO:0009005 - root , PO:0025034 - leaf , PO:0000005 - cultured plant cell , PO:0020104 - leaf sheath , PO:0009047 - stem 
24424	RF1	OsRF1, OsRING279, RING279	RING FINGER PROTEIN 1	RING finger protein 1, RING-type E3 ubiquitin ligase 279	RING FINGER PROTEIN 1		9		 Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Dormancy,  Vegetative organ - Culm	Os09g0478600	LOC_Os09g30160.1				GO:0005789 - endoplasmic reticulum membrane, GO:0009739 - response to gibberellin stimulus, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0044238 - primary metabolic process, GO:0044260 - cellular macromolecule metabolic process, GO:0008270 - zinc ion binding	TO:0000166 - gibberellic acid sensitivity, TO:0000391 - seed size, TO:0000207 - plant height, TO:0000136 - relative water content, TO:0002667 - abscisic acid content, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000253 - seed dormancy	
24425	SAMSL	OsSAMSL	S-ADENOSYLMETHIONINE SYNTHETASE-LIKE PROTEIN 	S-adenosylmethionine synthetase-like protein	S-ADENOSYLMETHIONINE SYNTHETASE-LIKE PROTEIN 	samsl, samsl-2, samsl-5, samsl-10, samsl-19	7	GO:1901141: regulation of lignin biosynthetic process.	 Biochemical character,  Tolerance and resistance - Insect resistance	Os07g0477250 	LOC_Os07g29440.1				GO:0002213 - defense response to insect, GO:0009808 - lignin metabolic process, GO:0046274 - lignin catabolic process, GO:0009809 - lignin biosynthetic process, GO:0005829 - cytosol, GO:0006556 - S-adenosylmethionine biosynthetic process, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004478 - methionine adenosyltransferase activity, GO:0046872 - metal ion binding, GO:0005524 - ATP binding	TO:0000731 - lignin content, TO:0000424 - brown planthopper resistance	
24426	ADK1	OsADK1	ARBUSCULE DEVELOPMENT KINASE 1	Arbuscule Development Kinase 1	ARBUSCULE DEVELOPMENT KINASE 1	Osadk1	1	GO:0036377: arbuscular mycorrhizal association.	 Vegetative organ - Root	Os01g0881966					GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0009610 - response to symbiotic fungus		
24427	NHO1	OsNHO1	NONHOST 1	nonhost 1			4	GO:1904276: regulation of wax biosynthetic process.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0647800	LOC_Os04g55410.1				GO:0042742 - defense response to bacterium, GO:0006641 - triglyceride metabolic process, GO:0005739 - mitochondrion, GO:0005737 - cytoplasm, GO:0046167 - glycerol-3-phosphate biosynthetic process, GO:0009751 - response to salicylic acid stimulus, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0004370 - glycerol kinase activity, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0006072 - glycerol-3-phosphate metabolic process, GO:0006071 - glycerol metabolic process, GO:0019563 - glycerol catabolic process, GO:0010025 - wax biosynthetic process, GO:0009753 - response to jasmonic acid stimulus, GO:0016310 - phosphorylation, GO:0010188 - response to microbial phytotoxin, GO:0002237 - response to molecule of bacterial origin	TO:0000172 - jasmonic acid sensitivity, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
24428	SRC2	OsSRC2, OsC2DP10, C2DP10	STEROID RECEPTOR COACTIVATOR 2	steroid receptor coactivator 2, C2 Domain-Containing Protein 10	STEROID RECEPTOR COACTIVATOR 2		1	highly homologous with the protein SRC2 in soybeans. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance	Os01g0934100	LOC_Os01g70790.1				GO:0006952 - defense response	TO:0000112 - disease resistance	
24429	S36		HYBRID STERILITY 36			S36-T65	12	The pollen sterility gene S36 was located between M1-S36 and RM3483, with a distance of 0.6 cM and 3.9 cM, respectively (Win et al. 2009). Two F1 pollen sterility loci, designated S36 and S25 might be the same locus. However, we tentatively named the F1 pollen sterility locus detected in the hybrid between japonica and O. nivara as S36 to discriminate it from the S25 locus found in the hybrid between japonica and indica. (Win et al. 2009). Having a similar map position and same genetic activity, S25, S36, S39, qS12, and Se might therefore be multiple alleles on the same locus responsible for hybrid sterility in rice (Li et al. 2020).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0009555 - pollen development	TO:0000036 - hybrid incompatibility, TO:0000485 - sterility related trait, TO:0000053 - pollen sterility, TO:0000042 - f1-hybrid incompatibility	PO:0001007 - pollen development stage 
24430	S37	S37(t)	HYBRID STERILITY 37			S37-glab	1	an interspecific hybrid sterile locus between Oryza sativa and O. glaberrima. The sterile gene S37(t) was restricted to a 1.0 cM region flanked by RM449 and RM113 on the long arm of chromosome 1. The hybrid sterile gene S37(t) may synchronously control male and female gamete sterility, or S37(t) is a tightly linked pollen and spikelet sterile locus.  gamete eliminator.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type, TO:0000416 - embryosac abortion, TO:0000485 - sterility related trait, TO:0000042 - f1-hybrid incompatibility, TO:0000421 - pollen fertility, TO:0000036 - hybrid incompatibility, TO:0000180 - spikelet fertility	
24431	S38	S38(t)	HYBRID STERILITY 38			S38-glab, S38-n	4	an interspecific hybrid sterile locus between Oryza sativa and O. glaberrima. The sterile gene S38(t) was mapped to a 2.7 cM region flanked by RM16251 and RM16260 on the short arm of chromosome 4. S38-n (a neutral allele for pollen fertility at the S38 locus). pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000485 - sterility related trait, TO:0000421 - pollen fertility, TO:0000218 - pollen abortion type, TO:0000036 - hybrid incompatibility, TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility	
24433	S39	S39(t)	HYBRID STERILITY 39			S39-glab, S39-n	12	an interspecific hybrid sterile locus between Oryza sativa and O. glaberrima. The sterile gene S39(t) was located in a 4.3 cM region flanked by RM5568 and RM7582 on the short arm of chromosome 12 (Xu et al. 2014). S39-n (neutral allele for pollen fertility at the S39 locus) (Li et al. 2018). The pollen killer S39(t) identified from the interspecific cross between O. sativa ssp. japonica and O. glaberrima was likewise mapped onto the same chromosome region of S36 and S25. Having a similar map position and same genetic activity, S25, S36, S39, qS12, and Se might therefore be multiple alleles on the same locus responsible for hybrid sterility in rice (Li et al. 2020). pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000421 - pollen fertility, TO:0000485 - sterility related trait, TO:0000036 - hybrid incompatibility, TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type	
24434	S51	S51(t)	HYBRID STERILITY 51			S51(t)-meridionalis, 51(t)-sativa, S51(t)-DJY1, S51(t)j	1	a locus for pollen sterility between O. sativa and O. meridionalis. The S51(t) detected on chromosome 1 (with the closest SSR markers RM5 and RM488) shared the same chromosome region with Sa. Comparison of the location and the mode of locus action, S51(t) and Sa might be the same locus.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000485 - sterility related trait, TO:0000036 - hybrid incompatibility, TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type	
24435	S52	S52(t)	HYBRID STERILITY 52			S52(t)-meridionalis, 52(t)-sativa	2	a locus for pollen sterility between O. sativa and O. meridionalis. The pollen sterility locus, S52(t), was located on the middle of the short arm of chromosome 2 (with the closest SSR marker RM6247) and no sterility locus related to pollen fertility was reported in this region.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000218 - pollen abortion type, TO:0000036 - hybrid incompatibility, TO:0000485 - sterility related trait, TO:0000053 - pollen sterility	
24436	S53	S53(t)	HYBRID STERILITY 53			S53(t)-meridionalis, 53(t)-sativa	2	a locus for pollen sterility between O. sativa and O. meridionalis. S53(t) was mapped between SSR marker RM110 and OSR17 on the chromosome 2 and comparative mapping indicated that the region of S53(t) was close to S22(t). Whether S53(t) is a new allele of S22(t) or a new locus needs further studies (li et al. 2018). S53(t), caused pollen sterility in an O. sativa-O. meridionalis hybrid, was identified on the same chromosome region harboring S22B (Li et al. 2020).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000036 - hybrid incompatibility, TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type, TO:0000485 - sterility related trait	
24437	S54	S54(t)	HYBRID STERILITY 54			S54(t)-meridionalis, 54(t)-sativa	7	a locus for pollen sterility between O. sativa and O. meridionalis.  Comparison of map positions also revealed that S54(t) on the top of short arm of the chromosome 7 (with the closest SSR markers RM1093 and RM7454) had good collinear with S20 and S56(t) (li et al. 2018). S20 was highly likely to be allelic to S54(t) and S56(t) (Li et al. 2020).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000036 - hybrid incompatibility, TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type, TO:0000485 - sterility related trait	
24438	S55	S55(t)	HYBRID STERILITY 55			S55(t)-meridionalis, 55(t)-sativa	7	a locus for pollen sterility between O. sativa and O. meridionalis. The map position of S55(t) was similar to that of S21 identified from O. glaberrima, O. rufipogon and S23(t) identified from O. glumaepatula, as well as qHMS7 from O. meridionalis, respectively. It is still highly possible for S55(t) to be a new allele of S21 and S23(t), and to be same locus as qHMS7.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000218 - pollen abortion type, TO:0000036 - hybrid incompatibility, TO:0000485 - sterility related trait, TO:0000053 - pollen sterility	
24439	S56	S56(t)	HYBRID STERILITY 56			S56(t)-sati, S56(t)-glum	7	an interspecific hybrid sterility locus between Oryza sativa and Oryza glumaepatula. S56(t) was mapped into the region between RM20797 and RM1093 on the short arm of chromosome 7. Mapping region of S56(t) was similar to the region of S20 and qSS-7 identified in a cross between O. sativa and O. glaberrima. Genetic pattern of S56(t) was consistent with one-locus allelic interaction model (Kitamura 1962) very well (Zhang et al. 2018). S20 was highly likely to be allelic to S54(t) and S56(t) (Li et al. 2020).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000036 - hybrid incompatibility, TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility, TO:0000485 - sterility related trait	
24440	S1A4		_			s1a4	6	O. glaberrima gene. The S1-g (the African rice O. glaberrima S1 allele) region contains six African rice-specific putative genes, S1A1-S1A6. Three closely linked genes (S1A4, S1TPR, and S1A6) in the African S1 allele (S1-g) constitute a killer- protector system that eliminates gametes carrying the Asian allele (S1-s). The S1-s allele in O. sativa harbors only the defective S1TP gene (an S1TPR allele which is a truncated form of S1TPR) and lacks the functional gamete killer and protector (S1A4 or S1A6 alleles). (Xie et al., 2019) PO:0030123: panicle inflorescence.	 Seed,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0005634 - nucleus, GO:0010431 - seed maturation	TO:0000358 - female sterility, TO:0000053 - pollen sterility, TO:0002661 - seed maturation, TO:0000436 - spikelet sterility, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000421 - pollen fertility, TO:0000592 - 1000-dehulled grain weight	PO:0009066 - anther , PO:0007632 - seed maturation stage , PO:0009049 - inflorescence 
24441	S1A6		_			s1a6	6	O. glaberrima gene. The S1-g (the African rice O. glaberrima S1 allele) region contains six African rice-specific putative genes, S1A1-S1A6. Three closely linked genes (S1A4, S1TPR, and S1A6) in the African S1 allele (S1-g) constitute a killer- protector system that eliminates gametes carrying the Asian allele (S1-s). The S1-s allele in O. sativa harbors only the defective S1TP gene (an S1TPR allele which is a truncated form of S1TPR) and lacks the functional gamete killer and protector (S1A4 or S1A6 alleles). (Xie et al., 2019) PO:0030123: panicle inflorescence.	 Seed,  Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility						GO:0010431 - seed maturation, GO:0005634 - nucleus	TO:0002661 - seed maturation, TO:0000042 - f1-hybrid incompatibility, TO:0000437 - male sterility, TO:0000421 - pollen fertility, TO:0000053 - pollen sterility, TO:0000592 - 1000-dehulled grain weight, TO:0000436 - spikelet sterility, TO:0000358 - female sterility	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0007632 - seed maturation stage 
24442	S22A	S22(t), S22A	F1 POLLEN SEMI-STERILITY 22A	F1 pollen semi-sterility 22A		S22A-glums	2	Pollen semi-sterility found in the hybrid between O. glumaepatula and O. sativa. O. glumaepatula allele S22B-g, O. meridionalis allele S22B-m. LC596092 (O. sativa), LC596094 (O. glumipatula), LC596093 (Oryza meridionalis). The S22(t) region was found to be composed of two loci, designated S22A and S22B, that independently induce F1 pollen sterility (Sakata et al 2014).  The linkage analysis using other SSR markers showed that RM12329 and RM12353 are completely linked to S22A and that RM12317 is linked to S22A at a distance of 0.22 cM  (Sakata et al 2014).	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000042 - f1-hybrid incompatibility, TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type	
24443	SDV2	OsSDV2	SEED DEVELOPMENT 2			Sdv2-s, Sdv2-m		"As the counterpart of SDV1, \"the other\" putative gene is named SEED DEVELOPMENT 2 (gene symbol: SDV2).  O. meridionalis accessions and O. sativa accessions should carry the functional allele and the unfunctional allele at the SDV2 locus, respectively.  The presence and chromosomal location of SDV2 have not been elucidated. We are undertaking the genetic analysis of SDV2, tracing back to earlier backcrossing populations. (Toyomoto et al. 2019)"	 Reproductive organ - Pollination, fertilization, fertility - Segregation distortion,  Seed						GO:0048316 - seed development	TO:0000653 - seed development trait, TO:0000639 - seed fertility, TO:0000036 - hybrid incompatibility	PO:0001170 - seed development stage 
24444	_	S23-ORF5	_			ORF5HJX74, ORF5Glu	7	one of three putative genes in S23 locus. ORF5 could be a possible candidate for S23 (Fang et al. 2019).  a SWIM-type zinc finger and MULE transposase domain-containing protein.		Os07g0646700	LOC_Os07g45250.1				GO:0048653 - anther development, GO:0008270 - zinc ion binding		PO:0001004 - anther development stage 
24445	_	S36(t)	_	HYBRID STERILITY 36			2	A new gene for hybrid sterility from a cross between Oryza sativa and O. glaberrima. A new locus designated as S36(t) was identified and mapped to interval between two SSRs RM208 (0.5cM) and RM482 (0.8cM) on rice chromosome 2 (Li et al. 2011). pollen killer.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility							TO:0000036 - hybrid incompatibility, TO:0000053 - pollen sterility, TO:0000218 - pollen abortion type	
24446	FBX267	OsFBX267	F-BOX PROTEIN 267		F-BOX PROTEIN 267		8		 Vegetative organ - Culm,  Reproductive organ - Heading date	Os08g0194000	LOC_Os08g09460.1				GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000207 - plant height	
24447	EFH1	OsEFH1	EF-HAND FAMILY PROTEIN 1 	EF-hand family protein 1	EF-HAND FAMILY PROTEIN 1 		3	a target gene of miR1432. GO:1900150:regulation of defense response to fungus. GO:0140426: PAMP-triggered immunity signalling pathway. GO:1903428: positive regulation of reactive oxygen species biosynthetic process. GO:2000071: regulation of defense response by callose deposition.	 Character as QTL - Yield and productivity,  Tolerance and resistance - Disease resistance	Os03g0812800	LOC_Os03g59790.1				GO:0052542 - callose deposition during defense response, GO:0002237 - response to molecule of bacterial origin, GO:0002238 - response to molecule of fungal origin, GO:0010200 - response to chitin, GO:0050832 - defense response to fungus, GO:0005509 - calcium ion binding, GO:0042742 - defense response to bacterium	TO:0000396 - grain yield, TO:0002759 - grain number, TO:0000074 - blast disease	
24448	_	OsTDC2, TDC2	_	tryptophan decarboxylase 2	_		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0510600	LOC_Os05g43510.1				GO:0009646 - response to absence of light, GO:0005737 - cytoplasm, GO:0030170 - pyridoxal phosphate binding, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress, GO:0016831 - carboxy-lyase activity, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0006520 - cellular amino acid metabolic process, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000163 - auxin sensitivity, TO:0000259 - heat tolerance, TO:0000075 - light sensitivity, TO:0006001 - salt tolerance, TO:0000179 - biotic stress trait, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
24449	COMT1	OsASMT1, ASMT1, OsCOMT1	CAFFEIC ACID O-METHYLTRANSFERASE 1	acetyl-serotonin methyltransferase 1, Caffeic Acid O-Methyltransferase 1	CAFFEIC ACID O-METHYLTRANSFERASE 1		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0753300	LOC_Os01g54969.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0019438 - aromatic compound biosynthetic process, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0007623 - circadian rhythm, GO:0032259 - methylation, GO:0009735 - response to cytokinin stimulus	TO:0000179 - biotic stress trait, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009005 - root 
24450	ASMT3	OsASMT3, OsCOMT8, COMT8	ACETYL-SEROTONIN METHYLTRANSFERASE 3	acetyl-serotonin methyltransferase 3, Caffeic Acid O-Methyltransferase 8	ACETYL-SEROTONIN METHYLTRANSFERASE 3		5		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0515500	LOC_Os05g43930.1				GO:0009753 - response to jasmonic acid stimulus, GO:0005737 - cytoplasm, GO:0009809 - lignin biosynthetic process, GO:0008171 - O-methyltransferase activity, GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000179 - biotic stress trait, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000733 - lignin biosynthesis trait, TO:0000731 - lignin content, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009047 - stem 
24451	ASMT5	OsASMT5, OsCOMT10, COMT10	ACETYL-SEROTONIN METHYLTRANSFERASE 5	acetyl-serotonin methyltransferase 5, Caffeic Acid O-Methyltransferase 10	ACETYL-SEROTONIN METHYLTRANSFERASE 5		6	CT841832 (Oryza rufipogon).	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0240800	LOC_Os06g13280.1				GO:0019438 - aromatic compound biosynthetic process, GO:0005737 - cytoplasm, GO:0007623 - circadian rhythm, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000179 - biotic stress trait	
24452	ASMT6	OsASMT6, OsCOMT11, COMT11	ACETYL-SEROTONIN METHYLTRANSFERASE 6	acetyl-serotonin methyltransferase 6, Caffeic Acid O-Methyltransferase 11	ACETYL-SEROTONIN METHYLTRANSFERASE 6		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0281300	LOC_Os06g16960.1				GO:0009646 - response to absence of light, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0005737 - cytoplasm, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0007623 - circadian rhythm, GO:0009408 - response to heat, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0032259 - methylation	TO:0000167 - cytokinin sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000173 - ethylene sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity	PO:0025034 - leaf 
24453	ASMT7	OsASMT7, OsCOMT12, COMT12	ACETYL-SEROTONIN METHYLTRANSFERASE 7	acetyl-serotonin methyltransferase 7, Caffeic Acid O-Methyltransferase 12	ACETYL-SEROTONIN METHYLTRANSFERASE 7		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0462800	LOC_Os07g27880.1				GO:0009735 - response to cytokinin stimulus, GO:0007623 - circadian rhythm, GO:0008171 - O-methyltransferase activity, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009607 - response to biotic stimulus	TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000167 - cytokinin sensitivity, TO:0000259 - heat tolerance	PO:0009047 - stem 
24454	ASMT8	OsASMT8, OsCOMT13, COMT13	ACETYL-SEROTONIN METHYLTRANSFERASE 8	acetyl-serotonin methyltransferase 8, Caffeic Acid O-Methyltransferase 13	ACETYL-SEROTONIN METHYLTRANSFERASE 8		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0463600	LOC_Os07g27970.1				GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity, GO:0009733 - response to auxin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0007623 - circadian rhythm, GO:0005737 - cytoplasm, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009737 - response to abscisic acid stimulus, GO:0009607 - response to biotic stimulus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0046983 - protein dimerization activity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	PO:0007041 - inflorescence emergence stage , PO:0009049 - inflorescence , PO:0009006 - shoot system 
24455	ASMT10	OsASMT10, OsCOMT16, COMT16	ACETYL-SEROTONIN METHYLTRANSFERASE 10	acetyl-serotonin methyltransferase 10, Caffeic Acid O-Methyltransferase 16	ACETYL-SEROTONIN METHYLTRANSFERASE 10		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0169300	LOC_Os08g07260.1				GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0007623 - circadian rhythm, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0005737 - cytoplasm, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus	TO:0000303 - cold tolerance, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf 
24456	ASMT12	OsASMT12, OsCOMT18, COMT18	ACETYL-SEROTONIN METHYLTRANSFERASE 12	acetyl-serotonin methyltransferase 12, Caffeic Acid O-Methyltransferase 18	ACETYL-SEROTONIN METHYLTRANSFERASE 12		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0454500	LOC_Os08g35310.1				GO:0005737 - cytoplasm, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0007623 - circadian rhythm, GO:0009753 - response to jasmonic acid stimulus, GO:0046983 - protein dimerization activity, GO:0009607 - response to biotic stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process, GO:0008171 - O-methyltransferase activity, GO:0009408 - response to heat, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity	PO:0025034 - leaf 
24457	ASMT14	OsASMT14	ACETYL-SEROTONIN METHYLTRANSFERASE 14	acetyl-serotonin methyltransferase 14	ACETYL-SEROTONIN METHYLTRANSFERASE 14		10	Q8VWG4.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0118000	LOC_Os10g02840.1				GO:0009723 - response to ethylene stimulus, GO:0005737 - cytoplasm, GO:0030187 - melatonin biosynthetic process, GO:0017096 - acetylserotonin O-methyltransferase activity, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0009607 - response to biotic stimulus, GO:0007623 - circadian rhythm, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000179 - biotic stress trait, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
24458	ASMT16	OsASMT16	ACETYL-SEROTONIN METHYLTRANSFERASE 16	acetyl-serotonin methyltransferase 16	ACETYL-SEROTONIN METHYLTRANSFERASE 16		11		 Tolerance and resistance - Stress tolerance,  Biochemical character		LOC_Os11g12760.1				GO:0009607 - response to biotic stimulus, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0046983 - protein dimerization activity, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0007623 - circadian rhythm, GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000173 - ethylene sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance	
24459	ASMT17	OsASMT17, OsCOMT26, COMT26	ACETYL-SEROTONIN METHYLTRANSFERASE 17	acetyl-serotonin methyltransferase 17, Caffeic Acid O-Methyltransferase 26	ACETYL-SEROTONIN METHYLTRANSFERASE 17		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0539500	LOC_Os11g33300.1				GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009723 - response to ethylene stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0007623 - circadian rhythm, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000179 - biotic stress trait, TO:0000173 - ethylene sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity	
24460	ASMT18	OsASMT18, OsCOMT30, COMT30	ACETYL-SEROTONIN METHYLTRANSFERASE 18	acetyl-serotonin methyltransferase 18, Caffeic Acid O-Methyltransferase 30	ACETYL-SEROTONIN METHYLTRANSFERASE 18		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0441300	LOC_Os12g25450.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009408 - response to heat, GO:0007623 - circadian rhythm, GO:0030187 - melatonin biosynthetic process, GO:0009416 - response to light stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0005737 - cytoplasm, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009409 - response to cold, GO:0009607 - response to biotic stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009733 - response to auxin stimulus, GO:0032259 - methylation, GO:0016021 - integral to membrane, GO:0019438 - aromatic compound biosynthetic process	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000075 - light sensitivity, TO:0000276 - drought tolerance, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance	PO:0025034 - leaf 
24461	ASMT19	OsASMT19, OsCOMT31, COMT31	ACETYL-SEROTONIN METHYLTRANSFERASE 19	acetyl-serotonin methyltransferase 19, Caffeic Acid O-Methyltransferase 31	ACETYL-SEROTONIN METHYLTRANSFERASE 19		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0441600	LOC_Os12g25490.1				GO:0019438 - aromatic compound biosynthetic process, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0007623 - circadian rhythm, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0009607 - response to biotic stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009507 - chloroplast, GO:0032259 - methylation, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009723 - response to ethylene stimulus	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000173 - ethylene sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000179 - biotic stress trait, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system 
24462	CHI1	OsCHI1	CHALCONE ISOMERASE 1		CHALCONE ISOMERASE 1		2		 Biochemical character	Os02g0320300	LOC_Os02g21520.1				GO:0005504 - fatty acid binding, GO:0009753 - response to jasmonic acid stimulus, GO:0006631 - fatty acid metabolic process, GO:0016872 - intramolecular lyase activity, GO:0009570 - chloroplast stroma	TO:0000172 - jasmonic acid sensitivity	PO:0025034 - leaf 
24463	_	OsCHI2, CHI2	_	Chalcone Isomerase 2			2		 Biochemical character	Os02g0778500	LOC_Os02g53810.1				GO:0009570 - chloroplast stroma, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0016872 - intramolecular lyase activity, GO:0005504 - fatty acid binding	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
24464	CHI5	OsCHI5	CHALCONE ISOMERASE 5	Chalcone Isomerase 5	CHALCONE ISOMERASE 5		7	CT837974.	 Biochemical character	Os07g0571600	LOC_Os07g38390.1				GO:0006631 - fatty acid metabolic process, GO:0009570 - chloroplast stroma, GO:0005504 - fatty acid binding, GO:0016872 - intramolecular lyase activity		
24465	_		_				8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0522400	LOC_Os08g41090.1				GO:0020037 - heme binding, GO:0016688 - L-ascorbate peroxidase activity, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0034599 - cellular response to oxidative stress, GO:0042744 - hydrogen peroxide catabolic process, GO:0000302 - response to reactive oxygen species, GO:0009845 - seed germination, GO:0010431 - seed maturation, GO:0005737 - cytoplasm, GO:0046685 - response to arsenic	TO:0000031 - silicon sensitivity	
24466	LCT2	OsLCT2	LOW-AFFINITY CATION TRANSPORTER 2	Low-affinity cation transporter 2	LOW-AFFINITY CATION TRANSPORTER 2		6	MW757982 (indica). It is located at position 23,774,023 to 23,776,721 on chromosome 6 in the Shuhui498 genome. TO:0006059: cadmium concentration. TO:1000056: shoot system cadmium content. TO: 0020090: zinc content trait. TO:1000050: root system zinc content. TO:1000073: shoot system zinc content.	 Tolerance and resistance - Stress tolerance,  Biochemical character						GO:0006826 - iron ion transport, GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0010039 - response to iron ion, GO:0010043 - response to zinc ion, GO:0010233 - phloem transport, GO:0015691 - cadmium ion transport, GO:0006829 - zinc ion transport, GO:0006828 - manganese ion transport	TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity	PO:0009005 - root , PO:0020124 - root stele , PO:0025257 - primary root elongation zone , PO:0003015 - primary root differentiation zone , PO:0025261 - pericycle cell , PO:0000258 - root cortex , PO:0006036 - root epidermis 
24467	_	OsCYCA3-1, CYCA3-1	_	Cyclin A3-1, A-TYPE CYCLIN 3-1			2	Q6K8S0. GO:0044772: mitotic cell cycle phase transition.	 Biochemical character	Os02g0605000	LOC_Os02g39260.1				GO:0005737 - cytoplasm, GO:0051301 - cell division, GO:0000307 - cyclin-dependent protein kinase holoenzyme complex, GO:0016538 - cyclin-dependent protein kinase regulator activity, GO:0000079 - regulation of cyclin-dependent protein kinase activity, GO:0005634 - nucleus		
24468	MISSEN	OsMISSEN	MIS-SHAPEN ENDOSPERM	lncRNA MISSEN			8	XLOC_057324. Long noncoding RNA. GO:2000014: regulation of endosperm development.	 Seed - Morphological traits - Endosperm						GO:0010342 - cellularization of endosperm, GO:0007010 - cytoskeleton organization, GO:0009960 - endosperm development, GO:0031113 - regulation of microtubule polymerization, GO:0000280 - nuclear division	TO:0000484 - seed shape	PO:0007633 - endosperm development stage , PO:0009089 - endosperm 
24469	DHCR7	OsDHCR7	7-DEHYDROCHOLESTEROL REDUCTASE	7-dehydrocholesterol reductase	7-DEHYDROCHOLESTEROL REDUCTASE		2		 Biochemical character	Os02g0465400	LOC_Os02g26650.3				GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors, GO:0009918 - sterol delta7 reductase activity, GO:0016132 - brassinosteroid biosynthetic process, GO:0016126 - sterol biosynthetic process, GO:0030176 - integral to endoplasmic reticulum membrane, GO:0016021 - integral to membrane, GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor		
24470	G2-NB-LRR	OsG2-NB-LRR, CVS-G2, OsCVS-G2	_	G2 nucleotide-binding and leucine-rich repeat protein, Close vein spacing G2			9	Increased vein number in CVS1 (Close vein spacing mutant 1) was confirmed to be associated with activated expression of two nucleotide-binding and leucine-rich repeat (NB-LRR) proteins: G2-NB-LRR and G7-NB-LRR (Lo et al. 2022). TO:0000820: leaf vein morphology trait. high vein density (VD) phenotype. Close vein spacing (CVS) phenotype.	 Vegetative organ - Leaf	Os09g0310300	LOC_Os09g14010.1				GO:0048366 - leaf development		
24471	G7-NB-LRR	OsG7-NB-LRR, CVS-G7, OsCVS-G7	_	G7 nucleotide-binding and leucine-rich repeat protein, Close vein spacing G7			9	Increased vein number in CVS1 (Close vein spacing mutant 1) was confirmed to be associated with activated expression of two nucleotide-binding and leucine-rich repeat (NB-LRR) proteins: G2-NB-LRR and G7-NB-LRR (Lo et al. 2022). TO:0000820: leaf vein morphology trait. high vein density (VD) phenotype. Close vein spacing (CVS) phenotype.	 Vegetative organ - Leaf	Os09g0311600	LOC_Os09g14100.1				GO:0048366 - leaf development, GO:0043531 - ADP binding, GO:0006952 - defense response		
24472	UGT91C1	OsUGT91C1, EUGT11, OsEUGT11	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 91C1	UDP-glucose-dependent glycosyltransferase 91C1	UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 91C1		3	Protein Data Bank under accession codes 7ERY,  7ES0, 7ES1, 7ERX, 7ES2. 	 Biochemical character	Os03g0702000	LOC_Os03g49524.1				GO:0008194 - UDP-glycosyltransferase activity, GO:0043231 - intracellular membrane-bounded organelle		
24473	U2AF65A	OsU2AF65A	SPLICING FACTOR U2AF LARGE SUBUNIT A	Splicing factor U2af large subunit A, U2 auxiliary factor 65 kDa subunit A, U2 snRNP Auxiliary Factor Large Subunit A	SPLICING FACTOR U2AF LARGE SUBUNIT A		11	Q2R0Q1. GO:0089701: U2AF complex.	 Tolerance and resistance - Stress tolerance,  Other	Os11g0636900	LOC_Os11g41820.2, LOC_Os11g41820.1				GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0071004 - U2-type prespliceosome, GO:0016607 - nuclear speck, GO:0000243 - commitment complex, GO:0030628 - pre-mRNA 3'-splice site binding, GO:0008187 - poly-pyrimidine tract binding, GO:0008380 - RNA splicing, GO:0006397 - mRNA processing, GO:0005634 - nucleus, GO:0019722 - calcium-mediated signaling, GO:0046686 - response to cadmium ion, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
24474	U2AF65B	OsU2AF65B	SPLICING FACTOR U2AF LARGE SUBUNIT B	Splicing factor U2af large subunit B, U2 auxiliary factor 65 kDa subunit B, U2 snRNP Auxiliary Factor Large Subunit B	SPLICING FACTOR U2AF LARGE SUBUNIT B		11	Q2QZL4. GO:0089701: U2AF complex.	 Other	Os11g0682300	LOC_Os11g45590.3, LOC_Os11g45590.2, LOC_Os11g45590.1				GO:0008380 - RNA splicing, GO:0030628 - pre-mRNA 3'-splice site binding, GO:0000243 - commitment complex, GO:0016607 - nuclear speck, GO:0071004 - U2-type prespliceosome, GO:0006397 - mRNA processing, GO:0008187 - poly-pyrimidine tract binding		
24475	MRLK1	OsMRLK1	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 1		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 1		1			Os01g0124500	LOC_Os01g03370.1				GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding		
24476	MRLK4	OsMRLK4	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 4		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 4		1			Os01g0810500	LOC_Os01g59550.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
24477	MRLK6	OsMRLK6	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 6		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 6		1			Os01g0810800	LOC_Os01g59570.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
24478	MRLK7	OsMRLK7	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 7		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 7		1			Os01g0976900	LOC_Os01g74550.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
24479	MRLK8	OsMRLK8	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 8		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 8		2			Os02g0151100	LOC_Os02g05730.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
24480	MRLK13	OsMRLK13	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 13		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 13		4	GO:0106310: protein serine kinase activity.		Os04g0291900	LOC_Os04g22470.1				GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
24481	MRLK15	OsMRLK15	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 15		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 15		4	GO:0106310: protein serine kinase activity.		Os04g0616300	LOC_Os04g52600.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane		
24482	MRLK16	OsMRLK16	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 16		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 16		4	GO:0106310: protein serine kinase activity.		Os04g0616400	LOC_Os04g52606.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
24483	MRLK17	OsMRLK17	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 17		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 17		4	GO:0106310: protein serine kinase activity.		Os04g0616500	LOC_Os04g52614.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
24484	MRLK18	OsMRLK18	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 18		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 18		4	GO:0106310: protein serine kinase activity.		Os04g0616700	LOC_Os04g52640.3, LOC_Os04g52640.2, LOC_Os04g52640.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
24485	MRLK21	OsMRLK21	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 21		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 21		5			Os05g0246600	LOC_Os05g15720.1				GO:0004714 - transmembrane receptor protein tyrosine kinase activity, GO:0005524 - ATP binding		
24486	MRLK22	OsMRLK22	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 22		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 22		5			Os05g0253200	LOC_Os05g16420.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
24487	MRLK23	OsMRLK23	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 23		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 23		5			Os05g0256500	LOC_Os05g16740.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
24488	MRLK25	OsMRLK25	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 25		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 25		5	GO:0106310: protein serine kinase activity.		Os05g0258400	LOC_Os05g16930.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
24489	MRLK27	OsMRLK27, OsMRLK28, MRLK28	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 27	malectin/malectin-like receptor-like kinase 28	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 27		5	OsMRLK27 (LOC_Os05g17800). OsMRLK28 (LOC_Os05g17810). GO:0106310: protein serine kinase activity.		Os05g0263100	LOC_Os05g17810.1, LOC_Os05g17800.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
24490	MRLK32	OsMRLK32	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 32		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 32		5			Os05g0318600	LOC_Os05g25430.2, LOC_Os05g25430.1				GO:0004714 - transmembrane receptor protein tyrosine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
24491	MRLK34	OsMRLK34	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 34		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 34		5			Os05g0524500	LOC_Os05g44930.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
24492	MRLK35	OsMRLK35	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 35		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 35		5			Os05g0524600	LOC_Os05g44940.1						
24493	MRLK36	OsMRLK36, OsMRLP8, MRLP8	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 36	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 8	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 36		5			Os05g0525000	LOC_Os05g44960.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
24494	MRLK37	OsMRLK37	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 37		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 37		5			Os05g0525400	LOC_Os05g44970.1						
24495	MRLK43	OsMRLK43	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 43		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 43		8	GO:0106310: protein serine kinase activity.		Os08g0201700	LOC_Os08g10150.1				GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
24496	MRLK44	OsMRLK44	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 44		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 44		8			Os08g0203100	LOC_Os08g10290.1						
24497	MRLK45	OsMRLK45	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 45		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 45		8			Os08g0203300	LOC_Os08g10300.1				GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
24498	MRLK47	OsMRLK47	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 47		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 47		8			Os08g0203600	LOC_Os08g10320.3, LOC_Os08g10320.2, LOC_Os08g10320.1				GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
24499	MRLK49	OsMRLK49	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 49		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 49		9			Os09g0264950	LOC_Os09g09220.1						
24500	MRLK50	OsMRLK50	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 50		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 50		9	GO:0106310: protein serine kinase activity.		Os09g0345300	LOC_Os09g17630.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004712 - protein serine/threonine/tyrosine kinase activity		
24501	MRLK52	OsMRLK52	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 52		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 52		9			Os09g0349600	LOC_Os09g18010.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
24502	MRLK53	OsMRLK53	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 53		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 53		9			Os09g0349700	LOC_Os09g18020.1						
24503	MRLK54	OsMRLK54	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 54		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 54		9			Os09g0350900	LOC_Os09g18159.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
24504	MRLK56	OsMRLK56	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 56		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 56		9			Os09g0352000	LOC_Os09g18260.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
24505	MRLK57	OsMRLK57	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 57		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 57		9			Os09g0353200	LOC_Os09g18360.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
24506	MRLK58	OsMRLK58	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 58		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 58		9	OsMRLK58 (LOC_Os09g18540) in Jing et al. 2020.		Os09g0354600	LOC_Os09g18540.1, LOC_Os09g18530.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
24507	MRLK59	OsMRLK59	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 59		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 59		9			Os09g0355400	LOC_Os09g18594.2, LOC_Os09g18594.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane		
24508	MRLK65	OsMRLK65	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 65		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 65		11			Os11g0102900	LOC_Os11g01200.2, LOC_Os11g01200.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity		
24509	MRLK66	OsMRLK66	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 66		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 66		12			Os12g0102500	LOC_Os12g01200.4, LOC_Os12g01200.3, LOC_Os12g01200.2, LOC_Os12g01200.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
24510	MRLK67	OsMRLK67	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 67		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE KINASE 67		12			Os12g0567500	LOC_Os12g37980.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding		
24511	MRLP2	OsMRLP2	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 2		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 2		2	GO:0106310: protein serine kinase activity.		Os02g0232500	LOC_Os02g13850.1				GO:0005524 - ATP binding, GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane		
24512	MRLP3	OsMRLP3	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 3		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 3		2			Os02g0609800	LOC_Os02g39650.1						
24513	MRLP4	OsMRLP4, OsMLD1, MLD1	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 4	Malectin, malectin-like domain protein 1	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 4	mld1	3	PO:0030123: panicle inflorescence. GO:1900055: regulation of leaf senescence.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Lesion mimic,  Seed - Morphological traits - Grain shape,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os03g0124300	LOC_Os03g03290.1				GO:0042742 - defense response to bacterium, GO:0005783 - endoplasmic reticulum, GO:0006487 - protein amino acid N-linked glycosylation, GO:0050832 - defense response to fungus, GO:0060548 - negative regulation of cell death, GO:0005794 - Golgi apparatus, GO:0010150 - leaf senescence, GO:0031347 - regulation of defense response, GO:0060049 - regulation of protein amino acid glycosylation, GO:0010939 - regulation of necrotic cell death, GO:0016301 - kinase activity, GO:0034976 - response to endoplasmic reticulum stress, GO:0030968 - endoplasmic reticulum unfolded protein response, GO:0016021 - integral to membrane	TO:0000063 - mimic response, TO:0000605 - hydrogen peroxide content, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000734 - grain length, TO:0000382 - 1000-seed weight, TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0000175 - bacterial blight disease resistance	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009005 - root 
24514	MRLP5	OsMRLP5	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 5		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 5		3			Os03g0184400	LOC_Os03g08610.2, LOC_Os03g08610.1						
24515	MRLP6	OsMRLP6	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 6		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 6		4	a receptor-like protein kinase FERONIA (FER).	 Tolerance and resistance - Stress tolerance	Os04g0586500	LOC_Os04g49690.1				GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
24516	MRLP7	OsMRLP7	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 7		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 7		5			Os05g0393100	LOC_Os05g32660.1						
24518	MRLP9	OsMRLP9	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 9		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 9		7			Os07g0501800	LOC_Os07g31840.1				GO:0016021 - integral to membrane, GO:0016301 - kinase activity		
24519	MRLP10	OsMRLP10	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 10		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 10		8	GO:0106310: protein serine kinase activity.		Os08g0202300	LOC_Os08g10250.1, LOC_Os08g10244.1				GO:0004712 - protein serine/threonine/tyrosine kinase activity, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
24520	MRLP11	OsMRLP11	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 11		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 11		9			Os09g0349333	LOC_Os09g17990.1						
24521	MRLP12	OsMRLP12	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 12		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 12		9			Os09g0349466	LOC_Os09g18000.1						
24522	MRLP13	OsMRLP13	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 13		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 13		9			Os09g0355700	LOC_Os09g19136.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity		
24523	MRLP14	OsMRLP14	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 14		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 14		9			Os09g0358100	LOC_Os09g19360.1						
24524	MRLP16	OsMRLP16	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 16		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 16		9	OsMRLP16 (LOC_Os09g1950) in Jing et al. 2020.		Os09g0359500	LOC_Os09g19510.1, LOC_Os09g19500.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity		
24525	MRLP17	OsMRLP17	MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 17		MALECTIN/MALECTIN-LIKE RECEPTOR-LIKE PROTEIN 17		9			Os09g0458300	LOC_Os09g28470.1						
24526	MAPKKK2	OsMAPKKK2	MAPK KINASE KINASE 2	MAPK kinase kinase 2	MAPK KINASE KINASE 2		10		 Tolerance and resistance - Stress tolerance	Os10g0430900	LOC_Os10g29540.1				GO:0004674 - protein serine/threonine kinase activity, GO:0004672 - protein kinase activity, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0007165 - signal transduction	TO:0000276 - drought tolerance	
24527	MAPKKK4	OsMAPKKK4	MAPK KINASE KINASE 4	MAPK kinase kinase 4	MAPK KINASE KINASE 4		2		 Tolerance and resistance - Stress tolerance	Os02g0220700	LOC_Os02g12810.4, LOC_Os02g12810.3, LOC_Os02g12810.2, LOC_Os02g12810.1				GO:0005737 - cytoplasm, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0007165 - signal transduction, GO:0004672 - protein kinase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
24528	PSIGRAS2	PsiOsGRAS2, PsiGRAS2	PSI GRAS PROTEIN 2		PSI GRAS PROTEIN 2		2		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance		LOC_Os02g21685.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000255 - sheath blight disease resistance	
24529	PSIGRAS3	PsiOsGRAS3, PsiGRAS3	PSI GRAS PROTEIN 3		PSI GRAS PROTEIN 3		3		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0575900	LOC_Os03g37900.1				GO:0003700 - transcription factor activity, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0043565 - sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	
24530	PSIGRAS5	PsiOsGRAS5, PsiGRAS5	PSI GRAS PROTEIN 5		PSI GRAS PROTEIN 5		4		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0447232	LOC_Os04g37440.1				GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
24531	PSIGRAS9	PsiOsGRAS9, PsiGRAS9	PSI GRAS PROTEIN 9		PSI GRAS PROTEIN 9		11		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance		LOC_Os11g11600.1				GO:0042742 - defense response to bacterium, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000615 - abscisic acid sensitivity	
24532	MIF1	OsMIF1	MINI ZINC FINGER 1	mini zinc finger 1	MINI ZINC FINGER 1		11	Q2RB28. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. GO:0000976: transcription cis-regulatory region binding.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm,  Character as QTL - Germination	Os11g0128300	LOC_Os11g03420.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046872 - metal ion binding, GO:0003700 - transcription factor activity, GO:0080006 - internode patterning, GO:0009739 - response to gibberellin stimulus, GO:0005737 - cytoplasm, GO:0009408 - response to heat	TO:0000259 - heat tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000544 - mesocotyl length	PO:0009066 - anther 
24533	_		_				3	Q10E64.		Os03g0773600	LOC_Os03g56260.1				GO:0003777 - microtubule motor activity, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0009531 - secondary cell wall, GO:0005874 - microtubule, GO:0005871 - kinesin complex, GO:0007018 - microtubule-based movement, GO:0008574 - plus-end-directed microtubule motor activity, GO:0008017 - microtubule binding		PO:0009047 - stem 
24534	_		_				8	Q6Z9D2.		Os08g0547500	LOC_Os08g43400.4, LOC_Os08g43400.3, LOC_Os08g43400.2, LOC_Os08g43400.1				GO:0005524 - ATP binding, GO:0008017 - microtubule binding, GO:0003777 - microtubule motor activity, GO:0007018 - microtubule-based movement, GO:0005874 - microtubule, GO:0009531 - secondary cell wall		PO:0009047 - stem 
24535	_		_				1	B9EY52.		Os01g0625200	LOC_Os01g43580.1				GO:0009531 - secondary cell wall, GO:0005874 - microtubule, GO:0007018 - microtubule-based movement, GO:0003777 - microtubule motor activity, GO:0008017 - microtubule binding, GO:0005524 - ATP binding		PO:0009047 - stem 
24536	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			3			Os03g0237600	LOC_Os03g13460.2, LOC_Os03g13460.1				GO:0005737 - cytoplasm, GO:0000226 - microtubule cytoskeleton organization, GO:0005819 - spindle, GO:0009531 - secondary cell wall, GO:0005874 - microtubule, GO:0008017 - microtubule binding		PO:0009047 - stem 
24537	DRP1C	OsDRP1C	DYNAMIN-RELATED PROTEIN 1C	Dynamin-related protein 1C	DYNAMIN-RELATED PROTEIN 1C		3	GO:0072583: clathrin-dependent endocytosis.	 Vegetative organ - Root	Os03g0713100	LOC_Os03g50520.2, LOC_Os03g50520.1				GO:0005737 - cytoplasm, GO:0006897 - endocytosis, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0016020 - membrane, GO:0030136 - clathrin-coated vesicle, GO:0010311 - lateral root formation, GO:0009504 - cell plate, GO:0008017 - microtubule binding, GO:0005874 - microtubule, GO:0009531 - secondary cell wall, GO:0048527 - lateral root development, GO:0005525 - GTP binding, GO:0005938 - cell cortex, GO:0000266 - mitochondrial fission, GO:0005886 - plasma membrane, GO:0010152 - pollen maturation, GO:0003924 - GTPase activity	TO:0000163 - auxin sensitivity, TO:0000656 - root development trait, TO:0000306 - root thickness	PO:0000016 - lateral root primordium , PO:0009005 - root , PO:0009047 - stem , PO:0025082 - reproductive shoot system , PO:0007520 - root development stage , PO:0020104 - leaf sheath 
24538	AK4	OsAK4	ADENYLATE KINASE 4	adenylate kinase 4	ADENYLATE KINASE 4		11	Q08480. CU405827 (Oryza rufipogon). 	 Biochemical character	Os11g0312220	LOC_Os11g20790.1				GO:0006163 - purine nucleotide metabolic process, GO:0005737 - cytoplasm, GO:0005739 - mitochondrion, GO:0005524 - ATP binding, GO:0004017 - adenylate kinase activity		
24539	LBD40	OsLBD40	LATERAL ORGAN BOUNDARIES DOMAIN 40	lateral organ boundaries domain protein 40, LBD-CONTAINING PROTEIN 40	LATERAL ORGAN BOUNDARIES DOMAIN PROTEIN 40		1		 Tolerance and resistance - Stress tolerance	Os01g0129600	LOC_Os01g03890.1				GO:0001666 - response to hypoxia, GO:0010468 - regulation of gene expression	TO:0000015 - oxygen sensitivity	PO:0000016 - lateral root primordium 
24540	PME41	OsPME41	PECTIN METHYLESTERASE 41	pectin methylesterase 41	PECTIN METHYLESTERASE 41		9		 Biochemical character	Os09g0545525/Os09g0545600	LOC_Os09g37360.1				GO:0005576 - extracellular region, GO:0045490 - pectin catabolic process, GO:0045330 - aspartyl esterase activity, GO:0042545 - cell wall modification, GO:0030599 - pectinesterase activity		
24541	PMEI2	OsPMEI2	PECTIN METHYLESTERASES INHIBITOR 2	pectin methylesterases inhibitor 2	PECTIN METHYLESTERASES INHIBITOR 2		1		 Biochemical character	Os01g0253200	LOC_Os01g14940.1				GO:0004857 - enzyme inhibitor activity		PO:0025281 - pollen 
24542	PMEI3	OsPMEI3	PECTIN METHYLESTERASES INHIBITOR 3	pectin methylesterases inhibitor 3	PECTIN METHYLESTERASES INHIBITOR 3		1		 Biochemical character	Os01g0311700	LOC_Os01g20970.1				GO:0005737 - cytoplasm, GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		PO:0025281 - pollen 
24543	PMEI4	OsPMEI4	PECTIN METHYLESTERASES INHIBITOR 4	pectin methylesterases inhibitor 4	PECTIN METHYLESTERASES INHIBITOR 4		1		 Biochemical character	Os01g0704000	LOC_Os01g50810.1				GO:0046910 - pectinesterase inhibitor activity, GO:0030599 - pectinesterase activity, GO:0004857 - enzyme inhibitor activity		
24544	PMEI6	OsPMEI6	PECTIN METHYLESTERASES INHIBITOR 6	pectin methylesterases inhibitor 6	PECTIN METHYLESTERASES INHIBITOR 6		2		 Biochemical character	Os02g0103300	LOC_Os02g01310.1				GO:0046910 - pectinesterase inhibitor activity, GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity		
24545	PMEI12	OsPMEI12	PECTIN METHYLESTERASES INHIBITOR 12	pectin methylesterases inhibitor 12	PECTIN METHYLESTERASES INHIBITOR 12	Ospmei12, Ospmi12-J3, Ospmei12-J8	3	Q10T67. GO:0097501: stress response to metal ion. TO:0003015: grain dry weight. TO:0003014: grain fresh weight. TO:0000819: inflorescence bract color. TO:0000993: cellulose content. TO:0006059: cadmium content trait. TO:0020109: vascular bundle development trait. TO:0020109: vascular bundle development trait. GO:0090351: seedling development. TO:0000949: seedling growth and development trait.	 Reproductive organ - panicle,  Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Character as QTL - Grain quality,  Seed - Physiological traits - Longevity,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility	Os03g0100100	LOC_Os03g01020.1				GO:0009846 - pollen germination, GO:0051510 - regulation of unidimensional cell growth, GO:0043414 - biopolymer methylation, GO:0044038 - cell wall macromolecule biosynthetic process, GO:0048653 - anther development, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0009664 - plant-type cell wall organization, GO:0009270 - response to humidity, GO:0009408 - response to heat, GO:0048046 - apoplast, GO:0046910 - pectinesterase inhibitor activity, GO:0060416 - response to growth hormone stimulus, GO:0009739 - response to gibberellin stimulus, GO:0055073 - cadmium ion homeostasis	TO:0000218 - pollen abortion type, TO:0000214 - anther shape, TO:0000531 - anther length, TO:0000472 - vascular bundle number, TO:0000442 - plant fresh weight, TO:0000633 - relative total dry weight, TO:0000590 - grain weight, TO:0000181 - seed weight, TO:0000455 - seed set percent, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000421 - pollen fertility, TO:0000019 - seedling height, TO:0000369 - vegetative growth time, TO:0000166 - gibberellic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000357 - growth and development trait, TO:0006007 - polysaccharide content, TO:0000259 - heat tolerance, TO:0000441 - humidity related trait, TO:0000345 - seed viability, TO:0000435 - seed longevity, TO:0000250 - vigor related trait, TO:0010001 - percent germination	PO:0001017 - M germinated pollen stage , PO:0001004 - anther development stage 
24546	PMEI15	OsPMEI15	PECTIN METHYLESTERASES INHIBITOR 15	pectin methylesterases inhibitor 15	PECTIN METHYLESTERASES INHIBITOR 15		3		 Biochemical character	Os03g0830600	LOC_Os03g61510.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
24547	PMEI16	OsPMEI16	PECTIN METHYLESTERASES INHIBITOR 16	pectin methylesterases inhibitor 16	PECTIN METHYLESTERASES INHIBITOR 16		3		 Biochemical character	Os03g0830800	LOC_Os03g61530.1				GO:0030599 - pectinesterase activity, GO:0004857 - enzyme inhibitor activity, GO:0046910 - pectinesterase inhibitor activity		
24548	PMEI22	OsPMEI22	PECTIN METHYLESTERASES INHIBITOR 22	pectin methylesterases inhibitor 22	PECTIN METHYLESTERASES INHIBITOR 22		5		 Biochemical character	Os05g0283200	LOC_Os05g20570.1				GO:0004857 - enzyme inhibitor activity, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0046910 - pectinesterase inhibitor activity, GO:0030599 - pectinesterase activity		PO:0025281 - pollen 
24549	PMEI23	OsPMEI23	PECTIN METHYLESTERASES INHIBITOR 23	pectin methylesterases inhibitor 23	PECTIN METHYLESTERASES INHIBITOR 23		5		 Biochemical character	Os05g0360900	LOC_Os05g29740.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
24550	PMEI35	OsPMEI35	PECTIN METHYLESTERASES INHIBITOR 35	pectin methylesterases inhibitor 35	PECTIN METHYLESTERASES INHIBITOR 35		10		 Biochemical character	Os10g0186200	LOC_Os10g10700.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
24551	PMEI43	OsPMEI48, PMEI48, OsPMEI43	PECTIN METHYLESTERASE INHIBITOR 43	pectin methylesterases inhibitor 48, PME inhibitor 43, pectin methylesterase inhibitor 43	PECTIN METHYLESTERASE INHIBITOR 43		11	OsPMEI48 in Kim et al. 2020.	 Biochemical character	Os11g0677400	LOC_Os11g45220.1				GO:0004857 - enzyme inhibitor activity, GO:0030599 - pectinesterase activity, GO:0046910 - pectinesterase inhibitor activity		
24552	PMEI28	OsPMEI28	PECTIN METHYLESTERASES INHIBITOR 28	pectin methylesterases inhibitor 28	PECTIN METHYLESTERASES INHIBITOR 28		8	Q0J8J8.	 Biochemical character	Os08g0108100	LOC_Os08g01670.1				GO:0040008 - regulation of growth, GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity, GO:0046910 - pectinesterase inhibitor activity, GO:0048046 - apoplast		
24553	PMEI8	OsPMEI8	PECTIN METHYLESTERASES INHIBITOR 8	PME inhibitor 8, pectin methylesterases inhibitor 8	PECTIN METHYLESTERASES INHIBITOR 8		2	Q6ETW4.	 Biochemical character	Os02g0537000	LOC_Os02g33380.1				GO:0048046 - apoplast, GO:0046910 - pectinesterase inhibitor activity, GO:0009519 - middle lamella		
24554	MAC2	OsMac2	MAP-KINASE ACTIVATING PROTEIN 2	MAP-kinase activating protein 2	MAP-KINASE ACTIVATING PROTEIN 2		2			Os02g0670000	LOC_Os02g44910.1				GO:0016301 - kinase activity, GO:0016020 - membrane, GO:0016021 - integral to membrane		PO:0009010 - seed , PO:0025034 - leaf 
24555	MAC3	OsMac3	MAP-KINASE ACTIVATING PROTEIN 3	MAP-kinase activating protein 3	MAP-KINASE ACTIVATING PROTEIN 3		5	GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:0098876:  vesicle-mediated transport to the plasma membrane.		Os05g0516900	LOC_Os05g44080.2, LOC_Os05g44080.1				GO:0009705 - plant-type vacuole membrane, GO:0031090 - organelle membrane, GO:0016021 - integral to membrane, GO:0007033 - vacuole organization		PO:0025034 - leaf , PO:0009010 - seed 
24556	MAC4	OsMac4	MAP-KINASE ACTIVATING PROTEIN 4	MAP-kinase activating protein 4	MAP-KINASE ACTIVATING PROTEIN 4		3			Os03g0406900	LOC_Os03g29340.2, LOC_Os03g29340.1				GO:0016021 - integral to membrane		
24557	F3'H8	OsF3'H, F3'H, OsF3'H8, OsCYP71W8, CYP71W8	FLAVONOID 3'-HYDROXYLASE 8	FLAVONOID 3'-HYDROXYLASE, flavonoid 3'-hydroxylase 8, Cytochrome P450 71W8	FLAVONOID 3'-HYDROXYLASE 8		9	BGIOSGA029682.	 Biochemical character	Os09g0441700	LOC_Os09g26980.1				GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
24558	_	Os5NG4, 5NG4	_				2	an auxin-induced protein that belongs to the DME (Drug/Metabolite Exporter) family. target of Osa-miR397.	 Biochemical character	Os02g0103600	LOC_Os02g01326.1				GO:0016021 - integral to membrane, GO:0022857 - transmembrane transporter activity		
24559	_	PR5	_	thaumatin			6		 Tolerance and resistance	Os06g0691200	LOC_Os06g47600.1				GO:0006952 - defense response		
24560	_	PR5	_	thaumatin			12		 Tolerance and resistance	Os12g0568900	LOC_Os12g38120.1				GO:0006952 - defense response		
24561	_		_	glucan endo-1, 3-beta-glucosidase			10		 Biochemical character	Os10g0347000	LOC_Os10g20650.2, LOC_Os10g20650.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0046658 - anchored to plasma membrane		
24562	_		_	glucan endo-1, 3-beta-glucosidase			3		 Biochemical character	Os03g0221500	LOC_Os03g12140.3, LOC_Os03g12140.2, LOC_Os03g12140.1				GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0046658 - anchored to plasma membrane		
24563	ETFALPHA	ETFalpha, OsETFalpha	ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA	ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT alpha, ETF subunit alpha	ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA		3	Q75LJ3.	 Biochemical character	Os03g0835400 	LOC_Os03g61920.1				GO:0009055 - electron carrier activity, GO:0005759 - mitochondrial matrix, GO:0050660 - FAD binding, GO:0005739 - mitochondrion, GO:0033539 - fatty acid beta-oxidation using acyl-CoA dehydrogenase		
24564	_	OsSPL36. SPL36	_	spotted leaf 36		spl36	11	SPL36 was delimited to a 260 kb region between InDel markers J0102-3 and J1206-4 on the long arm of chromosome 11. GO:2000377: regulation of reactive oxygen species metabolic process. 	 Tolerance and resistance - Lesion mimic,  Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - panicle,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity						GO:0031347 - regulation of defense response, GO:0043067 - regulation of programmed cell death, GO:0042742 - defense response to bacterium, GO:0009658 - chloroplast organization	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000496 - carotenoid content, TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance, TO:0000295 - chlorophyll-b content, TO:0000357 - growth and development trait, TO:0001027 - net photosynthetic rate, TO:0000522 - stomatal conductance, TO:0002715 - chloroplast development trait, TO:0001018 - transpiration rate, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000293 - chlorophyll-a content, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight	
24565	SKL1	OsSKL1, SKL1Nipponbare	SNORKEL-LIKE 1	SK-LIKE 1			12	LC651151. Two genes in the Nipponbare sequence database (LOC_Os12g40950 and LOC_Os12g40960) are actually one gene, we named this SKL1Nipponbare (Nagai et al. 2022). GO:0140110: transcription regulator activity. 	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance	Os12g0602450	LOC_Os12g40950.1, LOC_Os12g40960.1				GO:0080006 - internode patterning, GO:0006355 - regulation of transcription, DNA-dependent, GO:0030912 - response to deep water	TO:0000145 - internode length, TO:0000103 - deepwater stress	
24566	_		SNORKEL2-LIKE1	SK2-like1, SK2-like1C9285			12	LC651149 (SK2-like1).  The tandem arrangement of SK2-like1 and SK2-like2 was also found in the wild rice O. rufipogon (W0120) (Nagai et al. 2022).									
24567	_		SNORKEL2-LIKE2	SK2-like2, SK2-like2C9285			12	LC651150 (SK2-like2). The tandem arrangement of SK2-like1 and SK2-like2 was also found in the wild rice O. rufipogon (W0120) (Nagai et al. 2022).									
24568	CBSX13	OmCBSX13	_	cystathionine b-synthase domain containing protein CBSX13, CBS domain containing protein CBSX13	_		2	CBSX for proteins containing only a single CBS domain. absent in O. sativa. O. meridionalis: OMERI02G33320.									
24569	CBSX14	OmCBSX14	_	cystathionine b-synthase domain containing protein CBSX14, CBS domain containing protein CBSX14	_		1	CBSX for proteins containing only a single CBS domain. absent in O. sativa. O. meridionalis: OMERI01G33360									
24570	CBSX15	OnCBSX15	_	cystathionine b-synthase domain containing protein CBSX15, CBS domain containing protein CBSX15	_		5	CBSX for proteins containing only a single CBS domain. absent in O. sativa. O. nivara: ONIVA05G14030.									
24571	_	OmCBSCBS5, CBSCBS5	_	cystathionine b-synthase domain containing protein CBSCBS5, CBS domain containing protein CBSCBS5	_		5	CBSCBS nomenclature was given to the proteins containing only two CBS domains. absent in O. sativa. O. meridionalis: OMERI05G12070.									
24572	CBSCBS6	OgCBSCBS6	_	cystathionine b-synthase domain containing protein CBSCBS6, CBS domain containing protein CBSCBS6	_		2	CBSCBS nomenclature was given to the proteins containing only two CBS domains. absent in O. sativa. O. glaberrima: ORGLA02G0341000.									
24573	CBSCBS7	OgCBSCBS7	_	cystathionine b-synthase domain containing protein CBSCBS7, CBS domain containing protein CBSCBS7	_		3	CBSCBS nomenclature was given to the proteins containing only two CBS domains. absent in O. sativa. O. glaberrima: ORGLA03G0390100.									
24574	CBSCLC11	ObCBSCLC11	_	cystathionine b-synthase domain containing protein CBSCLC11, CBS domain containing protein CBSCLC11	_		8	CBSCLC for proteins containing one CBS domain and a CLC domain. O. barthii: OBART08G09800. absent in O. sativa.									
24575	CBSDUFCH2	OgCBSDUFCH2	_	cystathionine b-synthase domain containing protein CBSDUFCH2, CBS domain containing protein CBSDUFCH2	_		11	CBSDUFCH for protein containing one CBS domain along with DUF and CorC_HlyC domains. O. glaberrima: ORGLA11G0223100. absent in O. sativa.									
24576	CBSCBSPB5	ObCBSCBSPB5, ObrCBSCBSPB5, OrCBSCBSPB5, OpCBSCBSPB5, OnCBSCBSPB5, OmCBSCBSPB5, OlCBSCBSPB5, OsICBSCBSPB5, OgCBSCBSPB5	_	cystathionine b-synthase domain containing protein CBSCBSPB5, CBS domain containing protein CBSCBSPB5	_		11	CBSCBSPB for proteins containing two CBS domains and one PB1 domain. absent in O. sativa japonica. O. barthii: OBART11G14240, O. brachyantha: OB11G21210, , O. rufipogon: ORUFI11G15240, O. punctata: OPUNC11G11960, O. nivara: ONIVA11G13730, O. meridionalis: OMERI11G11890, O. longistaminata: KN538707.1_FGT010, O. sativa indica: BGIOSGA033955, O. glumaepatula: OGLUM11G13800. 									
24577	CBSTERCH	CBSTerCH, OsCBSTerCH, OsICBSTerCH	_	cystathionine b-synthase domain containing protein CBSTerCH, CBS domain containing protein CBSTerCH	_			CBSTerCH for proteins containing one CBS domain and a TerCH domain. absent in O. sativa japonica. O. sativa indica: BGIOSGA039158.									
24578	CBSCOATOMERE	CBSCoatomerE, OsCBSCoatomerE, OsICBSCoatomerE	_	cystathionine b-synthase domain containing protein CBSCoatomerE, CBS domain containing protein CBSCoatomerE	_		4	CBSCoatomerE for proteins containing one CBS domain and a CoatomerE domain. absent in O. sativa japonica. O. sativa indica: BGIOSGA017237.									
24579	CRN	OsCRN	CROOKED NECK PROTEIN	Crooked neck protein	CROOKED NECK PROTEIN		5	GO:0000974: Prp19 complex. GO:1901001: negative regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os05g0289400	LOC_Os05g22260.2, LOC_Os05g22260.1				GO:0009651 - response to salt stress, GO:0071007 - U2-type catalytic step 2 spliceosome, GO:0071014 - post-mRNA release spliceosomal complex, GO:0000245 - spliceosome assembly, GO:0000398 - nuclear mRNA splicing, via spliceosome	TO:0006001 - salt tolerance	
24580	_	IMPA1B, rImpa1b, Impa1b, OsIMalpha1b, IMalpha1b	_	importin-alpha1b, importin a1b, importin alpha1b			1	GO:0140426: PAMP-triggered immunity signalling pathway. GO:0061608: nuclear import signal receptor activity.	 Tolerance and resistance - Disease resistance	Os01g0343200 	LOC_Os01g24060.2, LOC_Os01g24060.1				GO:0031349 - positive regulation of defense response, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0008139 - nuclear localization sequence binding, GO:0006607 - NLS-bearing substrate import into nucleus, GO:0005737 - cytoplasm, GO:0006606 - protein import into nucleus, GO:0002238 - response to molecule of fungal origin, GO:0002237 - response to molecule of bacterial origin, GO:0010200 - response to chitin, GO:0005634 - nucleus	TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance	
24581	C2DP4	OsC2DP4	C2 DOMAIN-CONTAINING PROTEIN 4	C2 Domain-Containing Protein 4	C2 DOMAIN-CONTAINING PROTEIN 4		1	PO:0030123: panicle inflorescence.	 Tolerance and resistance	Os01g0369500	LOC_Os01g27190.1				GO:0006952 - defense response		PO:0009049 - inflorescence 
24582	C2DP5	OsC2DP5, OsFTIP9, FTIP9	C2 DOMAIN-CONTAINING PROTEIN 5	C2 Domain-Containing Protein 5, FT-INTERACTING PROTEIN 9	C2 DOMAIN-CONTAINING PROTEIN 5	Osftip9	1	GO:2000028: regulation of photoperiodism, flowering.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Reproductive organ - Heading date	Os01g0587300	LOC_Os01g40480.1				GO:0010446 - response to alkalinity, GO:0016021 - integral to membrane, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0048573 - photoperiodism, flowering, GO:0051223 - regulation of protein transport, GO:0009646 - response to absence of light, GO:0009651 - response to salt stress	TO:0000137 - days to heading, TO:0000460 - light intensity sensitivity, TO:0000481 - alkali sensitivity, TO:0006001 - salt tolerance, TO:0002616 - flowering time	
24583	C2DP9	OsC2DP9	C2 DOMAIN-CONTAINING PROTEIN 9	C2 Domain-Containing Protein 9	C2 DOMAIN-CONTAINING PROTEIN 9		1		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os01g0853800	LOC_Os01g63470.1				GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0006952 - defense response, GO:0009735 - response to cytokinin stimulus, GO:0009414 - response to water deprivation	TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity	
24584	C2DP11	OsC2DP11	C2 DOMAIN-CONTAINING PROTEIN 11	C2 Domain-Containing Protein 11	C2 DOMAIN-CONTAINING PROTEIN 11		1	PO:0030123: panicle inflorescence.		Os01g0951100	LOC_Os01g72230.1				GO:0005543 - phospholipid binding, GO:0005096 - GTPase activator activity		PO:0009049 - inflorescence 
24585	C2DP19	OsC2DP19	C2 DOMAIN-CONTAINING PROTEIN 19	C2 Domain-Containing Protein 19	C2 DOMAIN-CONTAINING PROTEIN 19		2		 Tolerance and resistance - Stress tolerance	Os02g0605400	LOC_Os02g39280.1				GO:0009408 - response to heat	TO:0000259 - heat tolerance	
24586	C2DP20	OsC2DP20	C2 DOMAIN-CONTAINING PROTEIN 20	C2 Domain-Containing Protein 20	C2 DOMAIN-CONTAINING PROTEIN 20		2			Os02g0640000	LOC_Os02g42710.1						
24587	C2DP21	OsC2DP21	C2 DOMAIN-CONTAINING PROTEIN 21	C2 Domain-Containing Protein 21	C2 DOMAIN-CONTAINING PROTEIN 21		2			Os02g0663900	LOC_Os02g44490.1				GO:0016021 - integral to membrane		
24588	C2DP22	OsC2DP22	C2 DOMAIN-CONTAINING PROTEIN 22	C2 Domain-Containing Protein 22	C2 DOMAIN-CONTAINING PROTEIN 22		2			Os02g0665100	LOC_Os02g44560.1						
24589	C2DP23	OsC2DP23	C2 DOMAIN-CONTAINING PROTEIN 23	C2 Domain-Containing Protein 23	C2 DOMAIN-CONTAINING PROTEIN 23		2			Os02g0722500	LOC_Os02g49070.1				GO:0005543 - phospholipid binding, GO:0005096 - GTPase activator activity		
24590	C2DP24	OsC2DP24	C2 DOMAIN-CONTAINING PROTEIN 24	C2 Domain-Containing Protein 24	C2 DOMAIN-CONTAINING PROTEIN 24		2		 Tolerance and resistance	Os02g0815100	LOC_Os02g57000.1				GO:0006952 - defense response		
24591	C2DP25	OsC2DP25	C2 DOMAIN-CONTAINING PROTEIN 25	C2 Domain-Containing Protein 25	C2 DOMAIN-CONTAINING PROTEIN 25		2		 Tolerance and resistance - Stress tolerance	Os02g0816000	LOC_Os02g57090.1				GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
24592	C2DP28	OsC2DP28	C2 DOMAIN-CONTAINING PROTEIN 28	C2 Domain-Containing Protein 28	C2 DOMAIN-CONTAINING PROTEIN 28		3		 Tolerance and resistance - Stress tolerance	Os03g0194100	LOC_Os03g09840.2, LOC_Os03g09840.1				GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance	
24593	C2DP32	OsC2DP32	C2 DOMAIN-CONTAINING PROTEIN 32	C2 Domain-Containing Protein 32	C2 DOMAIN-CONTAINING PROTEIN 32		3			Os03g0652000	LOC_Os03g44890.1						
24594	C2DP34	OsC2DP34	C2 DOMAIN-CONTAINING PROTEIN 34	C2 Domain-Containing Protein 34	C2 DOMAIN-CONTAINING PROTEIN 34		4			Os04g0472900	LOC_Os04g39680.1				GO:0016021 - integral to membrane		
24595	C2DP35	OsC2DP35	C2 DOMAIN-CONTAINING PROTEIN 35	C2 Domain-Containing Protein 35	C2 DOMAIN-CONTAINING PROTEIN 35		4			Os04g0476600	LOC_Os04g40070.1				GO:0016021 - integral to membrane		
24596	C2DP38	OsC2DP38	C2 DOMAIN-CONTAINING PROTEIN 38	C2 Domain-Containing Protein 38	C2 DOMAIN-CONTAINING PROTEIN 38		4			Os04g0682100	LOC_Os04g58570.1						
24597	C2DP39	OsC2DP39, OsFTIP6, FTIP6	C2 DOMAIN-CONTAINING PROTEIN 39	C2 Domain-Containing Protein 39, FT-INTERACTING PROTEIN 6	C2 DOMAIN-CONTAINING PROTEIN 39		4	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os04g0683800	LOC_Os04g58720.1				GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009049 - inflorescence 
24598	C2DP40	OsC2DP40	C2 DOMAIN-CONTAINING PROTEIN 40	C2 Domain-Containing Protein 40	C2 DOMAIN-CONTAINING PROTEIN 40		4			Os04g0691800	LOC_Os04g59520.1				GO:0016021 - integral to membrane		PO:0020103 - flag leaf , PO:0009089 - endosperm 
24599	C2DP42	OsC2DP42	C2 DOMAIN-CONTAINING PROTEIN 42	C2 Domain-Containing Protein 42	C2 DOMAIN-CONTAINING PROTEIN 42		5		 Tolerance and resistance	Os05g0149100	LOC_Os05g05650.1				GO:0006952 - defense response		
24600	C2DP47	OsC2DP47	C2 DOMAIN-CONTAINING PROTEIN 47	C2 Domain-Containing Protein 47	C2 DOMAIN-CONTAINING PROTEIN 47		5	PO:0030123: panicle inflorescence.		Os05g0429700	LOC_Os05g35480.1				GO:0016021 - integral to membrane		PO:0009049 - inflorescence 
24601	C2DP49	OsC2DP49	C2 DOMAIN-CONTAINING PROTEIN 49	C2 Domain-Containing Protein 49	C2 DOMAIN-CONTAINING PROTEIN 49		6		 Tolerance and resistance - Stress tolerance	Os06g0297800	LOC_Os06g19400.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0010446 - response to alkalinity, GO:0009651 - response to salt stress	TO:0000481 - alkali sensitivity, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
24602	C2DP54	OsC2DP54	C2 DOMAIN-CONTAINING PROTEIN 54	C2 Domain-Containing Protein 54	C2 DOMAIN-CONTAINING PROTEIN 54		6	PO:0030123: panicle inflorescence.		Os06g0609450	LOC_Os06g40704.3, LOC_Os06g40704.2, LOC_Os06g40704.1				GO:0005543 - phospholipid binding, GO:0005096 - GTPase activator activity		PO:0009049 - inflorescence 
24603	C2DP56	OsC2DP56	C2 DOMAIN-CONTAINING PROTEIN 56	C2 Domain-Containing Protein 56	C2 DOMAIN-CONTAINING PROTEIN 56		6			Os06g0638900	LOC_Os06g43190.3, LOC_Os06g43190.2, LOC_Os06g43190.1						
24604	C2DP59	OsC2DP59	C2 DOMAIN-CONTAINING PROTEIN 59	C2 Domain-Containing Protein 59	C2 DOMAIN-CONTAINING PROTEIN 59		7	PO:0030123: panicle inflorescence.		Os07g0108500	LOC_Os07g01780.1				GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0005886 - plasma membrane		PO:0009049 - inflorescence 
24605	C2DP60	OsC2DP60	C2 DOMAIN-CONTAINING PROTEIN 60	C2 Domain-Containing Protein 60	C2 DOMAIN-CONTAINING PROTEIN 60		7			Os07g0165100	LOC_Os07g07070.1				GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane		
24606	C2DP63	OsC2DP63	C2 DOMAIN-CONTAINING PROTEIN 63	C2 Domain-Containing Protein 63	C2 DOMAIN-CONTAINING PROTEIN 63		7		 Biochemical character	Os07g0483500	LOC_Os07g30020.1				GO:0016757 - transferase activity, transferring glycosyl groups, GO:0016021 - integral to membrane		
24607	C2DP66	OsC2DP66	C2 DOMAIN-CONTAINING PROTEIN 66	C2 Domain-Containing Protein 66	C2 DOMAIN-CONTAINING PROTEIN 66		7			Os07g0585000	LOC_Os07g39620.2, LOC_Os07g39620.1						
24608	C2DP67	OsC2DP67	C2 DOMAIN-CONTAINING PROTEIN 67	C2 Domain-Containing Protein 67	C2 DOMAIN-CONTAINING PROTEIN 67		7		 Tolerance and resistance	Os07g0670200	LOC_Os07g47390.1				GO:0006952 - defense response		PO:0009089 - endosperm , PO:0020103 - flag leaf 
24609	C2DP68	OsC2DP68	C2 DOMAIN-CONTAINING PROTEIN 68	C2 Domain-Containing Protein 68	C2 DOMAIN-CONTAINING PROTEIN 68		7		 Tolerance and resistance	Os07g0670300	LOC_Os07g47400.1				GO:0006952 - defense response		
24610	C2DP71	OsC2DP71	C2 DOMAIN-CONTAINING PROTEIN 71	C2 Domain-Containing Protein 71	C2 DOMAIN-CONTAINING PROTEIN 71		8		 Tolerance and resistance - Stress tolerance	Os08g0492400	LOC_Os08g38440.1				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0016021 - integral to membrane	TO:0000259 - heat tolerance, TO:0000303 - cold tolerance	
24611	C2DP72	OsC2DP72	C2 DOMAIN-CONTAINING PROTEIN 72	C2 Domain-Containing Protein 72	C2 DOMAIN-CONTAINING PROTEIN 72		8		 Tolerance and resistance	Os08g0562600	LOC_Os08g44850.1				GO:0006952 - defense response, GO:0016021 - integral to membrane		
24612	C2DP73	OsC2DP73	C2 DOMAIN-CONTAINING PROTEIN 73	C2 Domain-Containing Protein 73	C2 DOMAIN-CONTAINING PROTEIN 73		9			Os09g0251800	LOC_Os09g07800.1				GO:0009738 - abscisic acid mediated signaling, GO:0005634 - nucleus, GO:0005886 - plasma membrane		
24613	C2DP75	OsC2DP75	C2 DOMAIN-CONTAINING PROTEIN 75	C2 Domain-Containing Protein 75	C2 DOMAIN-CONTAINING PROTEIN 75		9			Os09g0516900	LOC_Os09g34130.1				GO:0016021 - integral to membrane		
24614	C2DP81	OsC2DP81	C2 DOMAIN-CONTAINING PROTEIN 81	C2 Domain-Containing Protein 81	C2 DOMAIN-CONTAINING PROTEIN 81		12			Os12g0187500	LOC_Os12g08670.1				GO:0016021 - integral to membrane		PO:0020103 - flag leaf , PO:0009089 - endosperm 
24615	ATL69	OsATL69, OsRING255, RING255	ARABIDOPSIS TOXICOS EN LEVADURA 69	Arabidopsis Toxicos en Levadura 69, RING-type E3 ubiquitin ligase 255	ARABIDOPSIS TOXICOS EN LEVADURA 69		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0192800	LOC_Os06g09310.1				GO:0016021 - integral to membrane, GO:0044260 - cellular macromolecule metabolic process, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0044238 - primary metabolic process	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
24616	ATL101	OsATL101, OsRING304, RING304	ARABIDOPSIS TOXICOS EN LEVADURA 101	Arabidopsis Toxicos en Levadura 101, RING-type E3 ubiquitin ligase 304	ARABIDOPSIS TOXICOS EN LEVADURA 101		9	CT835872. GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os09g0468300	LOC_Os09g29310.1				GO:0005768 - endosome, GO:0005802 - trans-Golgi network, GO:0016020 - membrane, GO:0006623 - protein targeting to vacuole, GO:0006896 - Golgi to vacuole transport, GO:0044260 - cellular macromolecule metabolic process, GO:0044238 - primary metabolic process, GO:0016021 - integral to membrane, GO:0017119 - Golgi transport complex, GO:0006511 - ubiquitin-dependent protein catabolic process		
24617	ATL32	OsATL32, OsRING329, RING329	ARABIDOPSIS TOXICOS EN LEVADURA 32	Arabidopsis Toxicos en Levadura 32, RING-type E3 ubiquitin ligase 329	ARABIDOPSIS TOXICOS EN LEVADURA 32		2	CT835380. 	 Biochemical character	Os02g0686100	LOC_Os02g46100.1				GO:0044260 - cellular macromolecule metabolic process, GO:0044238 - primary metabolic process, GO:0016021 - integral to membrane		
24618	ATL17	OsATL17, OsRING334, RING334	ARABIDOPSIS TOXICOS EN LEVADURA 17	Arabidopsis Toxicos en Levadura 17, RING-type E3 ubiquitin ligase 334	ARABIDOPSIS TOXICOS EN LEVADURA 17		6		 Biochemical character	Os06g0534800	LOC_Os06g34390.1				GO:0044238 - primary metabolic process, GO:0044260 - cellular macromolecule metabolic process, GO:0016021 - integral to membrane		
24619	RNF4	OsRNF4	RING FINGER PROTEIN 4	RING Finger Protein 4	RING FINGER PROTEIN 4		9		 Biochemical character	Os09g0504700	LOC_Os09g32690.3, LOC_Os09g32690.2, LOC_Os09g32690.1				GO:0044238 - primary metabolic process, GO:0044260 - cellular macromolecule metabolic process, GO:0046872 - metal ion binding		
24620	CHS23	OsCHS23	CHALCONE SYNTHASE 23	Chalcone synthase 23	CHALCONE SYNTHASE 23		11		 Biochemical character	Os11g0529100	LOC_Os11g32550.1				GO:0030639 - polyketide biosynthetic process, GO:0009813 - flavonoid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		
24621	FLS2	OsFLS2	FLAVONOL SYNTHASE 2	flavonol synthase 2	FLAVONOL SYNTHASE 2		10		 Biochemical character	Os10g0559200	LOC_Os10g40990.1				GO:0016491 - oxidoreductase activity		PO:0025034 - leaf 
24622	LDOX4	OsLDOX4	LEUCOANTHOCYANIDIN DIOXYGENASE 4	leucoanthocyanidin dioxygenase 4	LEUCOANTHOCYANIDIN DIOXYGENASE 4		6		 Biochemical character	Os06g0176500	LOC_Os06g07923.2				GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity		
24623	LDOX5	OsLDOX5	LEUCOANTHOCYANIDIN DIOXYGENASE 5	leucoanthocyanidin dioxygenase 5	LEUCOANTHOCYANIDIN DIOXYGENASE 5		6		 Biochemical character	Os06g0177700	LOC_Os06g08023.1				GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding		PO:0009009 - plant embryo 
24624	PEL9	OsLDOX6, LDOX6, OsPEL9	PANICLE ELONGATION LENGTH 9	leucoanthocyanidin dioxygenase 6, panicle elongation length 9	LEUCOANTHOCYANIDIN DIOXYGENASE 6	PEL9-GG, PEL9-TT	9	the candidate gene of qPEL9. a flavonol synthase (FLS)/flavanone 3-hydroxulase. 	 Reproductive organ - panicle,  Biochemical character	Os09g0353400	LOC_Os09g18390.1				GO:0016491 - oxidoreductase activity, GO:0009753 - response to jasmonic acid stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000040 - panicle length	
24625	LDOX7	OsLDOX7, OsFLS1, FLS1	LEUCOANTHOCYANIDIN DIOXYGENASE 7	leucoanthocyanidin dioxygenase 7	LEUCOANTHOCYANIDIN DIOXYGENASE 7		9	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os09g0353700	LOC_Os09g18450.1				GO:0016491 - oxidoreductase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0046872 - metal ion binding		PO:0009006 - shoot system 
24626	LDOX8	OsLDOX8	LEUCOANTHOCYANIDIN DIOXYGENASE 8	leucoanthocyanidin dioxygenase 8	LEUCOANTHOCYANIDIN DIOXYGENASE 8		9		 Biochemical character	Os09g0354100	LOC_Os09g18470.1				GO:0016491 - oxidoreductase activity, GO:0046872 - metal ion binding		
24627	LDOX9	OsLDOX9	LEUCOANTHOCYANIDIN DIOXYGENASE 9	leucoanthocyanidin dioxygenase 9	LEUCOANTHOCYANIDIN DIOXYGENASE 9		9		 Biochemical character	Os09g0354300	LOC_Os09g18520.1				GO:0046872 - metal ion binding, GO:0016491 - oxidoreductase activity		PO:0025034 - leaf 
24628	ANS2	OsANS2	ANTHOCYANIDIN SYNTHASE 2		ANTHOCYANIDIN SYNTHASE 2		6	Q67VR7. OsINS in Qiao et al. 2021.	 Tolerance and resistance - Stress tolerance,  Coloration - Anthocyanin,  Biochemical character	Os06g0626700	LOC_Os06g42130.1				GO:0050589 - leucocyanidin oxygenase activity, GO:0009718 - anthocyanin biosynthetic process, GO:0046872 - metal ion binding, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0031418 - L-ascorbic acid binding, GO:0009414 - response to water deprivation, GO:0051213 - dioxygenase activity	TO:0000276 - drought tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009066 - anther 
24629	F3'H1	OsF3'H1, OsCYP71U1, CYP71U1, OsCYP706C2, CYP706C2	FLAVONOID 3'-HYDROXYLASE 1	flavonoid 3'-hydroxylase 1, Cytochrome P450 71U1, Cytochrome P450 706C2	FLAVONOID 3'-HYDROXYLASE 1	oscyp706c2, oscyp706c2-L1, oscyp706c2-L2, oscyp706c2-L3	1	BGIOSGA004274. GO:1901601: strigolactone biosynthetic process. GO:0036377: arbuscular mycorrhizal association.	 Biochemical character,  Vegetative organ - Root	Os01g0700500	LOC_Os01g50490.1				GO:0020037 - heme binding, GO:0048364 - root development, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009610 - response to symbiotic fungus, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity	TO:0000227 - root length, TO:0000578 - root fresh weight, TO:0002685 - crown root number, TO:0000516 - relative root length, TO:0000656 - root development trait	PO:0009066 - anther , PO:0007520 - root development stage 
24630	F3'H3	OsF3'H3, OsCYP71W5, CYP71W5	FLAVONOID 3'-HYDROXYLASE 3	flavonoid 3'-hydroxylase 3, Cytochrome P450 71W5	FLAVONOID 3'-HYDROXYLASE 3		8	BGIOSGA026880.	 Biochemical character	Os08g0456200	LOC_Os08g35510.1				GO:0016021 - integral to membrane, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
24631	F3'H5	OsF3'H5	FLAVONOID 3'-HYDROXYLASE 5	flavonoid 3'-hydroxylase 5	FLAVONOID 3'-HYDROXYLASE 5		9	the target gene of lncRNA24320.6. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0263933	LOC_Os09g08920.1				GO:0006995 - cellular response to nitrogen starvation, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0042594 - response to starvation, GO:0016021 - integral to membrane	TO:0000011 - nitrogen sensitivity	PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009049 - inflorescence 
24632	F3'H6	OsF3'H6, OsF3'H7, F3'H6, CYP92A8, OsCYP92A8, OsCYP71W7, CYP71W7	FLAVONOID 3'-HYDROXYLASE 6	flavonoid 3'-hydroxylase 6, Cytochrome P450 92A8	FLAVONOID 3'-HYDROXYLASE 6		9	BGIOSGA030842. a candidate gene for Grain Length QTL qGL9.1. OsCYP92A8 in Yang et al. 2023. OsCYP71W7 in Sahoo et al. 2023.	 Seed - Morphological traits - Grain shape,  Biochemical character	Os09g0441600	LOC_Os09g26970.1				GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016021 - integral to membrane, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding	TO:0000734 - grain length	PO:0009006 - shoot system 
24634	_	DFR2, OsDFR2	_	dihydroflavonol 4-reductase 2			3	OsDFR2 in Wang et al. 2022.	 Biochemical character	Os03g0184550	LOC_Os03g08624.1				GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		PO:0009030 - carpel 
24635	ANR1	OsANR1	ANTHOCYANIDIN REDUCTASE 1	anthocyanidin reductase 1	ANTHOCYANIDIN REDUCTASE 1		4		 Biochemical character	Os04g0630100	LOC_Os04g53780.2, LOC_Os04g53780.1				GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		PO:0009049 - inflorescence 
24636	ANR2	OsANR2	ANTHOCYANIDIN REDUCTASE 2	anthocyanidin reductase 2	ANTHOCYANIDIN REDUCTASE 2		4		 Biochemical character	Os04g0630300	LOC_Os04g53800.1				GO:0009737 - response to abscisic acid stimulus, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	TO:0000615 - abscisic acid sensitivity	
24637	ANR4	OsANR4	ANTHOCYANIDIN REDUCTASE 4	anthocyanidin reductase 4	ANTHOCYANIDIN REDUCTASE 4		4		 Biochemical character	Os04g0630800	LOC_Os04g53850.1				GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		PO:0009006 - shoot system 
24638	ANR5	OsANR5	ANTHOCYANIDIN REDUCTASE 5	anthocyanidin reductase 5	ANTHOCYANIDIN REDUCTASE 5		4		 Biochemical character	Os04g0631000	LOC_Os04g53920.1				GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		PO:0009049 - inflorescence 
24639	ANR6	OsANR6	ANTHOCYANIDIN REDUCTASE 6	anthocyanidin reductase 6	ANTHOCYANIDIN REDUCTASE 6		6		 Biochemical character	Os06g0683100					GO:0009735 - response to cytokinin stimulus, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009006 - shoot system 
24640	_	AHL	_	AT-hook motif DNA-binding protein, AT-hook Motif Nuclear Localized protein			6			Os06g0326900	LOC_Os06g22100.2, LOC_Os06g22100.1				GO:0003680 - AT DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0010228 - vegetative to reproductive phase transition		
24641	_	AHL	_	AT-hook motif DNA-binding protein, AT-hook Motif Nuclear Localized protein			6				LOC_Os06g41860.1						
24643	_	AHL	_	AT-hook motif DNA-binding protein, AT-hook Motif Nuclear Localized protein			8			Os08g0478466	LOC_Os08g37345.1				GO:0003680 - AT DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
24645	_	AHL	_	AT-hook motif DNA-binding protein, AT-hook Motif Nuclear Localized protein			9			Os09g0464300	LOC_Os09g28930.1				GO:0005634 - nucleus, GO:0003680 - AT DNA binding, GO:0003700 - transcription factor activity		
24646	_	AHL	_	AT-hook motif DNA-binding protein, AT-hook Motif Nuclear Localized protein			1			Os01g0953801	LOC_Os01g72450.1				GO:0003700 - transcription factor activity, GO:0003680 - AT DNA binding, GO:0005634 - nucleus		
24647	_		_	receptor kinase			11		 Tolerance and resistance - Stress tolerance	Os11g0569800	LOC_Os11g36190.2, LOC_Os11g36190.1				GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
24648	CGT1	OsUGT5, UGT5, OsCGT1	CYTOKININ-O-GLUCOSYLTRANSFERASE 1	cytokinin-O-glucosyltransferase 1, URIDINE DIPHOSPHATE GLYCOSYLTRANSFERASE 5	CYTOKININ-O-GLUCOSYLTRANSFERASE 1		5		 Seed - Morphological traits - Grain shape,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0177500	LOC_Os05g08480.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0008194 - UDP-glycosyltransferase activity	TO:0006001 - salt tolerance, TO:0000397 - grain size, TO:0000276 - drought tolerance	
24649	_		_	peroxidase precursor			1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0378100	LOC_Os01g28030.1				GO:0009505 - plant-type cell wall, GO:0009414 - response to water deprivation, GO:0020037 - heme binding, GO:0046872 - metal ion binding, GO:0004601 - peroxidase activity, GO:0006979 - response to oxidative stress	TO:0000276 - drought tolerance	
24650	_		_	protein kinase-like			7		 Tolerance and resistance - Stress tolerance	Os07g0628700	LOC_Os07g43560.1				GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance	
24651	_	OsTPP4, TPP4	_	Trehalose 6-phosphate synthase 4			7		 Biochemical character		LOC_Os07g43610.1						
24652	_	OsTPP6, TPP6	_	Trehalose 6-phosphate synthase 6			7	Q0D6F4.	 Biochemical character	Os07g0485000	LOC_Os07g30160.1				GO:0004805 - trehalose-phosphatase activity, GO:0005992 - trehalose biosynthetic process		
24653	SEC15A	OsSEC15A	EXOCYST COMPLEX COMPONENT SEC15A	exocyst subunit SEC15A	EXOCYST COMPLEX COMPONENT SEC15A		10	GO:0090522: vesicle tethering involved in exocytosis.		Os10g0415200	LOC_Os10g27990.1				GO:0006904 - vesicle docking during exocytosis, GO:0006886 - intracellular protein transport, GO:0006887 - exocytosis, GO:0000145 - exocyst, GO:0006893 - Golgi to plasma membrane transport		
24654	EXO84B	OsEXO84B	EXOCYST SUBUNIT EXO84B	exocyst subunit EXO84B	EXOCYST SUBUNIT EXO84B		3			Os03g0804400 	LOC_Os03g58970.2, LOC_Os03g58970.1				GO:0006893 - Golgi to plasma membrane transport, GO:0000145 - exocyst, GO:0006887 - exocytosis, GO:0008104 - protein localization		
24655	_	OsPAL5, PAL5	_	Phenylalanine ammonia-lyase 5			4		 Biochemical character	Os04g0518200	LOC_Os04g43770.1						
24656	PRAF2	OsPRAF2, OsFYVE10, FYVE10	PH, RCC1 AND FYVE PROTEIN 2	"\"PH, RCC1 and FYVE protein 2\", FYVE Domain-containing protein 10"	PH, RCC1 AND FYVE PROTEIN 2		5	the candidate gene for qBB5.1. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance	Os05g0106700	LOC_Os05g01610.1				GO:0046872 - metal ion binding, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24657	PMEI5	OsPMEI5	PECTIN METHYLESTERASE INHIBITOR 5	PME inhibitor 5, pectin methylesterase inhibitor 5	PECTIN METHYLESTERASE INHIBITOR 5		2	CT835329.	 Biochemical character	Os02g0103200	LOC_Os02g01300.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24658	PMEI9	OsPMEI9	PECTIN METHYLESTERASE INHIBITOR 9	PME inhibitor 9, pectin methylesterase inhibitor 9	PECTIN METHYLESTERASE INHIBITOR 9		2		 Biochemical character	Os02g0537100	LOC_Os02g33390.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24659	PMEI13	OsPMEI13	PECTIN METHYLESTERASE INHIBITOR 13	PME inhibitor 13, pectin methylesterase inhibitor 13	PECTIN METHYLESTERASE INHIBITOR 13		3		 Biochemical character	Os03g0605900	LOC_Os03g40900.1				GO:0004857 - enzyme inhibitor activity		
24660	PMEI17	OsPMEI17	PECTIN METHYLESTERASE INHIBITOR 17	PME inhibitor 17, pectin methylesterase inhibitor 17	PECTIN METHYLESTERASE INHIBITOR 17		4		 Biochemical character	Os04g0106000	LOC_Os04g01570.1				GO:0004857 - enzyme inhibitor activity		
24661	PMEI18	OsPMEI18	PECTIN METHYLESTERASE INHIBITOR 18	PME inhibitor 18, pectin methylesterase inhibitor 18	PECTIN METHYLESTERASE INHIBITOR 18		4		 Biochemical character	Os04g0445300	LOC_Os04g36770.1				GO:0004857 - enzyme inhibitor activity		
24662	PMEI25	OsPMEI25	PECTIN METHYLESTERASE INHIBITOR 25	PME inhibitor 25, pectin methylesterase inhibitor 25	PECTIN METHYLESTERASE INHIBITOR 25		6		 Biochemical character	Os06g0711800	LOC_Os06g49760.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24663	PMEI26	OsPMEI26	PECTIN METHYLESTERASE INHIBITOR 26	PME inhibitor 26, pectin methylesterase inhibitor 26	PECTIN METHYLESTERASE INHIBITOR 26		7		 Biochemical character	Os07g0244800	LOC_Os07g14130.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24664	PMEI29	OsPMEI29	PECTIN METHYLESTERASE INHIBITOR 29	PME inhibitor 29, pectin methylesterase inhibitor 29	PECTIN METHYLESTERASE INHIBITOR 29		8		 Biochemical character	Os08g0330400	LOC_Os08g24160.1						
24665	PMEI30	OsPMEI30	PECTIN METHYLESTERASE INHIBITOR 30	PME inhibitor 30, pectin methylesterase inhibitor 30	PECTIN METHYLESTERASE INHIBITOR 30		8		 Biochemical character	Os08g0338500	LOC_Os08g25070.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24666	PMEI32	OsPMEI32	PECTIN METHYLESTERASE INHIBITOR 32	PME inhibitor 32, pectin methylesterase inhibitor 32	PECTIN METHYLESTERASE INHIBITOR 32		10		 Biochemical character	Os10g0184928	LOC_Os10g10560.1				GO:0004857 - enzyme inhibitor activity		
24667	PMEI33	OsPMEI33	PECTIN METHYLESTERASE INHIBITOR 33	PME inhibitor 33, pectin methylesterase inhibitor 33	PECTIN METHYLESTERASE INHIBITOR 33		10	CT835815.	 Biochemical character	Os10g0185400	LOC_Os10g10620.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24668	PMEI34	OsPMEI34	PECTIN METHYLESTERASE INHIBITOR 34	PME inhibitor 34, pectin methylesterase inhibitor 34	PECTIN METHYLESTERASE INHIBITOR 34		10		 Biochemical character	Os10g0185500	LOC_Os10g10630.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24669	PMEI36	OsPMEI36	PECTIN METHYLESTERASE INHIBITOR 36	PME inhibitor 36, pectin methylesterase inhibitor 36	PECTIN METHYLESTERASE INHIBITOR 36		10		 Biochemical character	Os10g0508700	LOC_Os10g36500.2, LOC_Os10g36500.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24670	PMEI37	OsPMEI37	PECTIN METHYLESTERASE INHIBITOR 37	PME inhibitor 37, pectin methylesterase inhibitor 37	PECTIN METHYLESTERASE INHIBITOR 37		11		 Biochemical character	Os11g0132100	LOC_Os11g03740.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24671	PMEI38	OsPMEI38	PECTIN METHYLESTERASE INHIBITOR 38	PME inhibitor 38, pectin methylesterase inhibitor 38	PECTIN METHYLESTERASE INHIBITOR 38		11		 Biochemical character	Os11g0132300	LOC_Os11g03750.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
24672	PMEI39	OsPMEI39	PECTIN METHYLESTERASE INHIBITOR 39	PME inhibitor 39, pectin methylesterase inhibitor 39	PECTIN METHYLESTERASE INHIBITOR 39		11		 Biochemical character	Os11g0132550	LOC_Os11g03770.1				GO:0004857 - enzyme inhibitor activity		
24673	PMEI40	OsPMEI40	PECTIN METHYLESTERASE INHIBITOR 40	PME inhibitor 40, pectin methylesterase inhibitor 40	PECTIN METHYLESTERASE INHIBITOR 40		11		 Biochemical character	Os11g0191500	LOC_Os11g08680.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24674	PMEI41	OsPMEI41	PECTIN METHYLESTERASE INHIBITOR 41	PME inhibitor 41, pectin methylesterase inhibitor 41	PECTIN METHYLESTERASE INHIBITOR 41		11		 Biochemical character	Os11g0194100	LOC_Os11g08860.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24675	PMEI42	OsPMEI42	PECTIN METHYLESTERASE INHIBITOR 42	PME inhibitor 42, pectin methylesterase inhibitor 42	PECTIN METHYLESTERASE INHIBITOR 42		11		 Biochemical character	Os11g0194600	LOC_Os11g08930.1.2, LOC_Os11g08930.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24676	PMEI44	OsPMEI44	PECTIN METHYLESTERASE INHIBITOR 44	PME inhibitor 44, pectin methylesterase inhibitor 44	PECTIN METHYLESTERASE INHIBITOR 44		12		 Biochemical character	Os12g0128900	LOC_Os12g03490.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
24677	PMEI45	OsPMEI45	PECTIN METHYLESTERASE INHIBITOR 45	PME inhibitor 45, pectin methylesterase inhibitor 45	PECTIN METHYLESTERASE INHIBITOR 45		12		 Biochemical character	Os12g0129100	LOC_Os12g03510.1				GO:0043086 - negative regulation of catalytic activity, GO:0004857 - enzyme inhibitor activity		
24678	PMEI47	OsPMEI47	PECTIN METHYLESTERASE INHIBITOR 47	PME inhibitor 47, pectin methylesterase inhibitor 47	PECTIN METHYLESTERASE INHIBITOR 47		12		 Biochemical character	Os12g0561500	LOC_Os12g37480.1				GO:0030599 - pectinesterase activity, GO:0004857 - enzyme inhibitor activity		
24679	PMEI48	OsPMEI48	PECTIN METHYLESTERASE INHIBITOR 48	PME inhibitor 48, pectin methylesterase inhibitor 48	PECTIN METHYLESTERASE INHIBITOR 48		12		 Biochemical character	Os12g0599700	LOC_Os12g40750.1						
24680	PMEI49	OsPMEI49	PECTIN METHYLESTERASE INHIBITOR 49	PME inhibitor 49, pectin methylesterase inhibitor 49	PECTIN METHYLESTERASE INHIBITOR 49		12		 Biochemical character	Os12g0599800	LOC_Os12g40760.1				GO:0004857 - enzyme inhibitor activity, GO:0043086 - negative regulation of catalytic activity		
24681	_		_	Phosphopantetheine attachment site domain containing protein			3	a pivotal candidate gene for qLTG3a (QTL for Low-temperature germinability). 		Os03g0213300	LOC_Os03g11460.1						PO:0025034 - leaf , PO:0009010 - seed 
24682	XISRNA001	xisRNA001, OsxisRNA001	XANTHOMONAS-INDUCED SMALL RNA 001	Xanthomonas-induced small RNA 001			2	overlapping with LOC_Os02g06930.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24683	XISRNA002	xisRNA002, OsxisRNA002	XANTHOMONAS-INDUCED SMALL RNA 002	Xanthomonas-induced small RNA 002			3	overlapping with LOC_Os03g15770.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24684	XISRNA003	xisRNA003, OsxisRNA003	XANTHOMONAS-INDUCED SMALL RNA 003	Xanthomonas-induced small RNA 003			6	overlapping with LOC_Os06g46330.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24685	XISRNA004	xisRNA004, OsxisRNA004	XANTHOMONAS-INDUCED SMALL RNA 004	Xanthomonas-induced small RNA 004			9	overlapping with LOC_Os09g17630.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24686	XISRNA006	xisRNA006, OsxisRNA006	XANTHOMONAS-INDUCED SMALL RNA 006	Xanthomonas-induced small RNA 006			2	overlapping with LOC_Os02g57420.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24687	XISRNA011	xisRNA011, OsxisRNA011	XANTHOMONAS-INDUCED SMALL RNA 011	Xanthomonas-induced small RNA 011			6	overlapping with LOC_Os06g51170.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24688	XISRNA013	xisRNA013, OsxisRNA013	XANTHOMONAS-INDUCED SMALL RNA 013	Xanthomonas-induced small RNA 013			11	overlapping with LOC_Os11g32880.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24689	XISRNA017	xisRNA017, OsxisRNA017	XANTHOMONAS-INDUCED SMALL RNA 017	Xanthomonas-induced small RNA 017			7	overlapping with LOC_Os07g34980.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24690	XISRNA020	xisRNA020, OsxisRNA020	XANTHOMONAS-INDUCED SMALL RNA 020	Xanthomonas-induced small RNA 020			4	overlapping with LOC_Os04g52840.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24691	XISRNA023	xisRNA023, OsxisRNA023	XANTHOMONAS-INDUCED SMALL RNA 023	Xanthomonas-induced small RNA 023			4	overlapping with LOC_Os04g56160.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24692	XISRNA026	xisRNA026, OsxisRNA026	XANTHOMONAS-INDUCED SMALL RNA 026	Xanthomonas-induced small RNA 026			2	overlapping with LOC_Os02g17292.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24693	XISRNA063	xisRNA063, OsxisRNA063	XANTHOMONAS-INDUCED SMALL RNA 063	Xanthomonas-induced small RNA 063			8	overlapping with LOC_Os08g01830.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24694	XISRNA064	xisRNA064, OsxisRNA064	XANTHOMONAS-INDUCED SMALL RNA 064	Xanthomonas-induced small RNA 064			3	overlapping with OsAGO13 (LOC_Os03g57560).	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24695	XISRNA022	xisRNA022, OsxisRNA022	XANTHOMONAS-INDUCED SMALL RNA 022	Xanthomonas-induced small RNA 022			4	overlapping with OsDCL4/SHO1 (LOC_Os04g43050).	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24696	XISRNA007	xisRNA007, OsxisRNA007	XANTHOMONAS-INDUCED SMALL RNA 007	Xanthomonas-induced small RNA 007			1	overlapping with OsRLCK28 (LOC_Os01g15470).	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24697	XISRNA007	xisRNA007, OsxisRNA007	XANTHOMONAS-INDUCED SMALL RNA 007	Xanthomonas-induced small RNA 007			1	overlapping with OsRLCK28 (LOC_Os01g15470).									
24698	XISRNA032	xisRNA032, OsxisRNA032	XANTHOMONAS-INDUCED SMALL RNA 032	Xanthomonas-induced small RNA 032			4	overlapping with LOC_Os04g55720.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24699	XISRNA042	xisRNA042, OsxisRNA042	XANTHOMONAS-INDUCED SMALL RNA 042	Xanthomonas-induced small RNA 042			3	overlapping with LOC_Os03g24930.	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24700	XISRNA044	xisRNA044, OsxisRNA044	XANTHOMONAS-INDUCED SMALL RNA 044	Xanthomonas-induced small RNA 044			1	overlapping with OsRLCK55 (LOC_Os01g71000).	 Tolerance and resistance - Disease resistance						GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24701	MYB59	OsMYB59, OsHHO3, HHO3	MYB TRANSCRIPTION FACTOR 59	Myb transcription factor 59, HRS1 HOMOLOG 3	MYB TRANSCRIPTION FACTOR 59	oshho3-KO	3	a GARP/G2-like transcription factor family protein. GO:2001249: negative regulation of ammonia assimilation cycle.	 Tolerance and resistance - Stress tolerance	Os03g0764600	LOC_Os03g55590.4, LOC_Os03g55590.3, LOC_Os03g55590.1				GO:0045847 - negative regulation of nitrogen utilization, GO:0019676 - ammonia assimilation cycle, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0001016 - relative chlorophyll content, TO:0000644 - relative root dry weight, TO:0000153 - relative yield, TO:0000636 - relative shoot dry weight	
24702	2R_MYB38	OsMYB5, MYB5, Os2R_MYB38	R2R3-MYB TRANSCRIPTION FACTOR 38	myb transcription factor 5, R2R3-MYB Transcription Factor 38	R2R3-MYB TRANSCRIPTION FACTOR 38		3		 Tolerance and resistance - Stress tolerance	Os03g0388600	LOC_Os03g27090.1				GO:0003677 - DNA binding, GO:0016021 - integral to membrane		
24703	TRX11	OsTrx11, Trx11	THIOREDOXIN 11		THIOREDOXIN 11		4	LOC_Os04g35150 (not in Rice Genome Annotation Project (RGAP) Release 7 data).	 Biochemical character								
24704	TRX19	OsTrx19, Trx19	THIOREDOXIN 19		THIOREDOXIN 19		5	Q5TKD8.	 Biochemical character	Os05g0200100	LOC_Os05g11090.2, LOC_Os05g11090.1				GO:0045454 - cell redox homeostasis, GO:0009507 - chloroplast		
24705	TRX22	OsTrx22, Trx22	THIOREDOXIN 22		THIOREDOXIN 22		6	Q655X0.	 Biochemical character	Os06g0665900	LOC_Os06g45510.3, LOC_Os06g45510.2, LOC_Os06g45510.1				GO:0005739 - mitochondrion		
24706	TRX4	OsTrx04, Trx04, OsTrx4, Trx4	THIOREDOXIN 4		THIOREDOXIN 4		1	Q5JMR9.	 Biochemical character	Os01g0963400	LOC_Os01g73234.2, LOC_Os01g73234.1				GO:0015035 - protein disulfide oxidoreductase activity, GO:0016671 - oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor, GO:0016491 - oxidoreductase activity, GO:0005737 - cytoplasm, GO:0009507 - chloroplast		
24707	_		_				2		 Biochemical character	Os02g0575800	LOC_Os02g36600.1				GO:0004034 - aldose 1-epimerase activity, GO:0030246 - carbohydrate binding, GO:0033499 - galactose catabolic process via UDP-galactose, GO:0006006 - glucose metabolic process		
24708	_		_				7		 Biochemical character	Os07g0616850					GO:0005975 - carbohydrate metabolic process		
24709	_		_				3		 Biochemical character	Os03g0656850					GO:0005975 - carbohydrate metabolic process		
24710	_		_				3		 Biochemical character	Os03g0756300	LOC_Os03g54910.1				GO:0005975 - carbohydrate metabolic process		
24711	_		_				9		 Biochemical character	Os09g0427551					GO:0005975 - carbohydrate metabolic process		
24712	_		_				2		 Biochemical character	Os02g0522300	LOC_Os02g32250.2, LOC_Os02g32250.1				GO:0005975 - carbohydrate metabolic process		
24713	_		_				5		 Biochemical character	Os05g0474600	LOC_Os05g39680.1				GO:0016491 - oxidoreductase activity, GO:0005975 - carbohydrate metabolic process, GO:0031969 - chloroplast membrane		
24714	_		_				2	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os02g0730050					GO:0016021 - integral to membrane, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005975 - carbohydrate metabolic process		
24715	_		_				2		 Biochemical character	Os02g0730075					GO:0005975 - carbohydrate metabolic process		
24716	_	OsHsp90, HSP90	_	heat-shock protein 90			8	similar to heat-shock protein precursor	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0487800	LOC_Os08g38086.4, LOC_Os08g38086.3				GO:0051082 - unfolded protein binding, GO:0009609 - response to symbiotic bacterium, GO:0034021 - response to silicon dioxide, GO:0009408 - response to heat, GO:0005783 - endoplasmic reticulum, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0048471 - perinuclear region of cytoplasm, GO:0009570 - chloroplast stroma	TO:0000259 - heat tolerance	
24717	_		_	signal peptidase complex subunit 2			2		 Biochemical character	Os02g0565200	LOC_Os02g35720.1				GO:0005787 - signal peptidase complex, GO:0016021 - integral to membrane, GO:0006465 - signal peptide processing, GO:0045047 - protein targeting to ER, GO:0008233 - peptidase activity		
24718	DNG703	OsDNG703	DNA GLYCOSYLASE/LYASE 703	DNA glycosylase/lyase DNG703, DNA glycosylase/lyase 703	DNA GLYCOSYLASE/LYASE 703			1636 AA.	 Biochemical character								
24719	MAMYB	OsmaMYB, maMYB	MEMBRANE-ANCHORED MYB TRANSCRIPTION FACTOR	membrane-anchored MYB transcription factor	MEMBRANE-ANCHORED MYB TRANSCRIPTION FACTOR		8	GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance	Os08g0159000	LOC_Os08g06240.1				GO:0051083 - 'de novo' cotranslational protein folding, GO:0006450 - regulation of translational fidelity, GO:0005829 - cytosol, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0042742 - defense response to bacterium, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0002237 - response to molecule of bacterial origin, GO:0016021 - integral to membrane, GO:0030544 - Hsp70 protein binding, GO:0043022 - ribosome binding	TO:0000315 - bacterial disease resistance	
24720	DPH1	SCD2, OsSCD2, OsDPH1, CEF3, OsCEF3	DECREASED PLANT HEIGHT 1	STOMATAL CYTOKINESIS DEFECTIVE2, STOMATAL CYTOKINESIS DEFECTIVE 2, decreased plant height 1, culm easily fragile 3	dph1-1, dph1-2, cef3, cef3-c1, cef3-c2, cef3-c3		1	a homologous protein of Arabidopsis STOMATAL CYTOKINESIS DEFECTIVE2 (AtSCD2). PO:0030123: panicle inflorescence. TO:0000975: grain width. GO:2001006: regulation of cellulose biosynthetic process. TO:0000993: cellulose content.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - panicle	Os01g0928100	LOC_Os01g70320.1				GO:0001558 - regulation of cell growth, GO:0000271 - polysaccharide biosynthetic process, GO:0005794 - Golgi apparatus, GO:0006897 - endocytosis, GO:0000911 - cytokinesis by cell plate formation, GO:0009834 - secondary cell wall biogenesis, GO:0070726 - cell wall assembly, GO:0060627 - regulation of vesicle-mediated transport, GO:0030244 - cellulose biosynthetic process, GO:0006892 - post-Golgi vesicle-mediated transport	TO:0000227 - root length, TO:0000145 - internode length, TO:0000207 - plant height, TO:0000333 - sugar content, TO:0000051 - stem strength, TO:0006032 - panicle size, TO:0006006 - monosaccharide content, TO:0000557 - secondary branch number, TO:0000547 - primary branch number, TO:0000447 - filled grain number, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000397 - grain size, TO:0000040 - panicle length, TO:0000576 - stem length	PO:0025034 - leaf , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0020104 - leaf sheath 
24721	STP14	OsSTP14	SUGAR TRANSPORT PROTEIN 14	Sugar transporter STP14, STP protein 14, monosaccharide transporter STP14	SUGAR TRANSPORT PROTEIN 14	stp14	4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0452600	LOC_Os04g37970.1				GO:0009737 - response to abscisic acid stimulus, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0009744 - response to sucrose stimulus, GO:0009749 - response to glucose stimulus, GO:0009750 - response to fructose stimulus, GO:0006970 - response to osmotic stress, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000238 - growth media composition sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000696 - starch content, TO:0000300 - glucose content, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0006005 - fructose content	PO:0009005 - root , PO:0009066 - anther 
24722	STP18	OsSTP18	SUGAR TRANSPORT PROTEIN 18	Sugar transporter STP18, STP protein 18, monosaccharide transporter STP18	SUGAR TRANSPORT PROTEIN 18	stp18	4		 Biochemical character	Os04g0454200	LOC_Os04g38220.1				GO:0016021 - integral to membrane, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity	TO:0000696 - starch content, TO:0006005 - fructose content, TO:0000300 - glucose content	PO:0009005 - root , PO:0009066 - anther 
24723	HIPL1	OsHIPL1	HEDGEHOG-INTERACTING PROTEIN-LIKE 1 PROTEIN	hedgehog-interacting protein-like 1 protein	HEDGEHOG-INTERACTING PROTEIN-LIKE 1 PROTEIN	Oshipl1, Oshipl1a, Oshipl1b, Oshipl1c	3	a causal gene of the major QTL qSV3 for rice seed vigour. TO:0000931: seed quality trait.	 Vegetative organ - Root,  Seed - Physiological traits,  Character as QTL - Germination	Os03g0691800	LOC_Os03g48540.1				GO:0010030 - positive regulation of seed germination, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0009738 - abscisic acid mediated signaling, GO:0009787 - regulation of abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0046345 - abscisic acid catabolic process, GO:0009687 - abscisic acid metabolic process	TO:0000132 - basal internode diameter, TO:0000227 - root length, TO:0000615 - abscisic acid sensitivity, TO:0000250 - vigor related trait, TO:0002667 - abscisic acid content	PO:0009005 - root , PO:0007057 - 0 seed germination stage 
24724	FL3	OsFL3	FLOURY 3	Floury3		fl3, fl3-1, fl3-2, fl3-3	1	PLATZ transcription factor. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Character as QTL - Grain quality	Os01g0517800	LOC_Os01g33350.1				GO:0080112 - seed growth, GO:0048316 - seed development	TO:0000734 - grain length, TO:0000396 - grain yield, TO:0000382 - 1000-seed weight, TO:0000355 - heterosis, TO:0000399 - grain thickness, TO:0000590 - grain weight, TO:0000653 - seed development trait, TO:0000266 - chalky endosperm	PO:0001170 - seed development stage 
24725	_	PK, OsPK5, PK5	_	cytosolic pyruvate kinase isozyme, Pyruvate kinase 5		ospk5-2, ospk5-3	1	BGIOSGA001898. OsPK5 in Dong et al. 2022.	 Character as QTL - Yield and productivity,  Biochemical character,  Seed - Physiological traits - Storage substances	Os01g0276700	LOC_Os01g16960.2, LOC_Os01g16960.1				GO:0005524 - ATP binding, GO:0000287 - magnesium ion binding, GO:0030955 - potassium ion binding, GO:0004743 - pyruvate kinase activity, GO:0005737 - cytoplasm, GO:0006096 - glycolysis, GO:0016301 - kinase activity	TO:0000196 - amylose content, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000455 - seed set percent	
24726	_	OsCR7, CR7	_	cytochrome bc1 complex subunit			11	BGIOSGA034870.	 Biochemical character	Os11g0162200	LOC_Os11g06340.1				GO:0005750 - mitochondrial respiratory chain complex III, GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c		
24727	WBC8	OsWBC8	WHITE-BROWN COMPLEX HOMOLOG PROTEIN 8	White-brown complex homolog protein 8	WHITE-BROWN COMPLEX HOMOLOG PROTEIN 8		2			Os02g0630100	LOC_Os02g41920.1				GO:0007584 - response to nutrient, GO:0016021 - integral to membrane	TO:0000480 - nutrient sensitivity	
24728	LRR2	OsLRR2	LEUCINE-RICH REPEAT 2	Leucine-rich repeat 2	LEUCINE-RICH REPEAT 2 PROTEIN		2		 Biochemical character	Os02g0636400	LOC_Os02g42412.1				GO:0007584 - response to nutrient, GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, GO:0019005 - SCF ubiquitin ligase complex	TO:0000480 - nutrient sensitivity	
24729	_	OsEXPA	_	Expansin			2	Q0DZ85. GO:0071555: cell wall organization.		Os02g0636400	LOC_Os02g42650.1				GO:0005576 - extracellular region, GO:0019953 - sexual reproduction, GO:0006949 - syncytium formation, GO:0007584 - response to nutrient, GO:0016020 - membrane	TO:0000480 - nutrient sensitivity	
24730	BES1-1	OsBES1-1	BRI1-EMSSUPPRESSOR 1-1	BRI1-EMSSUPPRESSOR1-1	BRI1-EMSSUPPRESSOR 1-1		1		 Tolerance and resistance - Stress tolerance	Os01g0176900	LOC_Os01g08180.1				GO:0006970 - response to osmotic stress, GO:0009409 - response to cold, GO:0006351 - transcription, DNA-dependent, GO:0040008 - regulation of growth, GO:0009742 - brassinosteroid mediated signaling, GO:0003700 - transcription factor activity, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance	PO:0007057 - 0 seed germination stage , PO:0007010 - whole plant fruit ripening stage 
24731	DRP4A	OsDRP4A	DYNAMIN-RELATED PROTEIN 4A		DYNAMIN-RELATED PROTEIN 4A		3		 Biochemical character	Os03g0260000	LOC_Os03g15420.1				GO:0003924 - GTPase activity, GO:0005874 - microtubule, GO:0016020 - membrane, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding, GO:0005525 - GTP binding		
24732	DRP4B	OsDRP4B	DYNAMIN-RELATED PROTEIN 4B		DYNAMIN-RELATED PROTEIN 4B		4		 Biochemical character	Os04g0129900	LOC_Os04g04060.1				GO:0005737 - cytoplasm, GO:0005525 - GTP binding, GO:0003924 - GTPase activity, GO:0008017 - microtubule binding, GO:0016020 - membrane, GO:0005874 - microtubule		
24733	CYP716A16	OsCYP716A16	P-450 716A16	Cytochrome P450 716A16	P-450 716A16		7		 Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0518100	LOC_Os07g33440.1				GO:0020037 - heme binding, GO:0016021 - integral to membrane, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0006955 - immune response, GO:0016125 - sterol metabolic process, GO:0009753 - response to jasmonic acid stimulus, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016491 - oxidoreductase activity, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009963 - positive regulation of flavonoid biosynthetic process, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding	TO:0000255 - sheath blight disease resistance, TO:0002671 - momilactone B content, TO:0000605 - hydrogen peroxide content, TO:0000290 - flavonoid content, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity	
24734	HTH5	OsHTH5, qHTH5, OsPLPHP, PLPHP	HEAT TOLERANCE AT HEADING STAGE ON CHROMOSOME 5	pyridoxal phosphate homeostasis protein, heat tolerance at heading stage on chromosome 5	PYRIDOXAL PHOSPHATE HOMEOSTASIS PROTEIN		5	pyridoxal phosphate-binding protein PLPBP (formerly called PROSC) family. 	 Tolerance and resistance - Stress tolerance	Os05g0150000	LOC_Os05g05740.1				GO:0042823 - pyridoxal phosphate biosynthetic process, GO:0009408 - response to heat, GO:0005739 - mitochondrion, GO:0030170 - pyridoxal phosphate binding	TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content	
24735	CBP80	OsCBP80	CAP-BINDING PROTEIN 80	cap-binding protein 80	CAP-BINDING PROTEIN 80		3	Q10LJ0. OsCBC (cap-binding complex ) subunit. 		Os03g0347200	LOC_Os03g22570.2, LOC_Os03g22570.1				GO:0000339 - RNA cap binding, GO:0016607 - nuclear speck, GO:0005634 - nucleus, GO:0005846 - nuclear cap binding complex, GO:0005737 - cytoplasm, GO:0006370 - mRNA capping, GO:0003729 - mRNA binding, GO:0005845 - mRNA cap binding complex		PO:0001170 - seed development stage 
24736	RLK22	OsRLK22	RECEPTOR-LIKE KINASE 22	Receptor-like Kinase 22	RECEPTOR-LIKE KINASE 22		1		 Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance	Os01g0115900 	LOC_Os01g02600.1				GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0030247 - polysaccharide binding, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding	TO:0000063 - mimic response, TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf 
24737	RLK19	OsRLK19	RECEPTOR-LIKE KINASE 19	Receptor-like Kinase 19	RECEPTOR-LIKE KINASE 19		1			Os01g0115700 	LOC_Os01g02570.1				GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0030247 - polysaccharide binding		PO:0025034 - leaf 
24738	ATAC1	OsATAC1	ALTERNATIVE TALC TARGET LOCUS 1	Alternative TalC Target locus 1, ATAC1 lncRNA			11	a potential long noncoding RNA (lncRNA). ATAC1 transcript is 456 nt long and spans positions 23,222,261 to 23,222,716 on Chromosome 11. 							GO:0002237 - response to molecule of bacterial origin		
24739	PB2	Pb2, OsPB2	PANICLE BLAST RESISTANCE 2	Panicle blast resistance-2, Panicle blast 2		Pb2-J, Pb2-S	11	LOC_Os11g45600 and LOC_Os11g45620 fused together to constitute a complete CC-NBS-LRR type gene named Pb2 (99% of the accessions did not have the retrotransposon LOC_Os11g45610.) Pb2-J: Pb2 cloned from Jiangnanwan. Pb2-S: Pb2 cloned from Suyunuo. 	 Tolerance and resistance - Disease resistance	Os11g0682400/Os11g0682600	LOC_Os11g45620.1, LOC_Os11g45600.1				GO:0050832 - defense response to fungus	TO:0000468 - leaf blast disease resistance, TO:0000477 - panicle blast disease resistance	PO:0025142 - leaf tip , PO:0020141 - stem node , PO:0009010 - seed 
24740	PPO2	OsPPO2	PROPORPHYRINOGEN IX OXIDASE 2	Protoporphyrinogen IX Oxidase 2, Protogen IX oxidase 2	PROPORPHYRINOGEN IX OXIDASE 2		4		 Biochemical character	Os04g0490000/Os04g0490100 	LOC_Os04g41260.2, LOC_Os04g41260.1				GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity, GO:0006782 - protoporphyrinogen IX biosynthetic process, GO:0050660 - FAD binding, GO:0009507 - chloroplast, GO:0016491 - oxidoreductase activity		
24741	_	OsSYP132, SYP132	_	Syntaxin of Plants132		Ossyp132-1, Ossyp132-2	7	OsSYP131b  in Liu et al. 2022. In the Ossyp131b Ossyp132 double mutants, the colonization rate and arbuscule abundance level decreased markedly. AM symbiosis is in fact controlled by the combined action of both SYP13I and SYP13II clades ( Liu et al. 2022). GO:0036377: arbuscular mycorrhizal association.	 Biochemical character	Os07g0528900	LOC_Os07g34510.1				GO:0016192 - vesicle-mediated transport, GO:0031225 - anchored to membrane, GO:0016021 - integral to membrane, GO:0009610 - response to symbiotic fungus, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0006886 - intracellular protein transport, GO:0005484 - SNAP receptor activity		PO:0009005 - root 
24742	FATM	OsFatM, FatM	FAT REQUIRED FOR AM SYMBIOSIS	fat required for AM symbiosis			1	GO:0036377: arbuscular mycorrhizal association.	 Biochemical character	Os01g0502300	LOC_Os01g31760.1				GO:0009507 - chloroplast, GO:0000036 - acyl carrier activity, GO:0016297 - acyl-[acyl-carrier-protein] hydrolase activity		
24743	_	TPS4, OsTPS4	_	terpene synthase 4			3		 Biochemical character,  Tolerance and resistance - Insect resistance	Os03g0347900	LOC_Os03g22620.1				GO:0010333 - terpene synthase activity, GO:0016102 - diterpenoid biosynthetic process, GO:0000287 - magnesium ion binding, GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
24744	_	TPS9, OsTPS9	_	terpene synthase 9			3		 Biochemical character,  Tolerance and resistance - Insect resistance	Os03g0362500	LOC_Os03g24760.1				GO:0002213 - defense response to insect, GO:0016102 - diterpenoid biosynthetic process, GO:0010333 - terpene synthase activity, GO:0000287 - magnesium ion binding	TO:0000454 - stem borer resistance, TO:0000261 - insect damage resistance	
24745	_	TPS10, OsTPS10	_	terpene synthase 10			5		 Biochemical character		LOC_Os05g24500.1						
24746	_	TPS20, OsTPS20	_	terpene synthase 20			4		 Biochemical character,  Tolerance and resistance - Insect resistance	Os04g0344100	LOC_Os04g27670.1				GO:0002213 - defense response to insect, GO:0000287 - magnesium ion binding, GO:0010333 - terpene synthase activity, GO:0016102 - diterpenoid biosynthetic process	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
24747	TPS25	OsTPS25	TERPENE SYNTHASE 25	terpene synthase 25	TERPENE SYNTHASE 25		5		 Biochemical character		LOC_Os05g16980.1						
24748	TPS27	OsTPS27	TERPENE SYNTHASE 27	terpene synthase 27	TERPENE SYNTHASE 27		4		 Biochemical character		LOC_Os04g27760.1						
24749	_	TPS30, OsTPS30	_	terpene synthase 30			4		 Biochemical character	Os04g0338600	LOC_Os04g26980.1				GO:0010333 - terpene synthase activity, GO:0016102 - diterpenoid biosynthetic process		
24750	_	TPS31, OsTPS31	_	terpene synthase 31			8		 Biochemical character	Os08g0168400	LOC_Os08g07120.1				GO:0010333 - terpene synthase activity, GO:0000287 - magnesium ion binding		
24751	TPS37	OsTPS37, CRPG15, OsCRPG15	TERPENE SYNTHASE 37	terpene synthase 37, collar region-preferential gene 15	TERPENE SYNTHASE 37		4		 Tolerance and resistance - Insect resistance,  Biochemical character	Os04g0108600	LOC_Os04g01810.1				GO:0010333 - terpene synthase activity, GO:0002213 - defense response to insect	TO:0000454 - stem borer resistance, TO:0000261 - insect damage resistance	PO:0006012 - leaf collar 
24752	TPS43	OsTPS43	TERPENE SYNTHASE 43	terpene synthase 43	TERPENE SYNTHASE 43		10		 Biochemical character,  Tolerance and resistance - Insect resistance	Os10g0489500	LOC_Os10g34790.1				GO:0010333 - terpene synthase activity, GO:0000287 - magnesium ion binding, GO:0002213 - defense response to insect	TO:0000261 - insect damage resistance, TO:0000454 - stem borer resistance	
24753	TPS42	OsTPS42	TERPENE SYNTHASE 42	terpene synthase 42	TERPENE SYNTHASE 42			TPS42 was lost in the reference genome (MSU). OsBasmati1G0518485300, OsCG14G0508133100, OsCN1G0515912300, OsD62G0517805300, OsDHX2G0511143500, OsFH838G0513547700, OsG8G0510538300, OsG630G0508339900, OsII32G0517552900, OsIR64G0508307500, OsJ4155G0510751100, OsLemontG0508432500, OsLJG0508433900, OsN22G0513625900, OsNamRooG0511113300, OsY3551G0510581500, TMG0513579300, OsTumbaG0508901100|OsTumbaG0500556500|OsTumbaG0508900900, OsWSSMG0508364100, OsY58SG0510820500, OsKoshG0511297900, OsYX1G0514137300, OsZH11G0509113700.	 Biochemical character								
24754	_	IGPS	_	indole-3-glycerolphosphate synthase			4		 Biochemical character	Os04g0467700	LOC_Os04g39270.1				GO:0004640 - phosphoribosylanthranilate isomerase activity, GO:0000162 - tryptophan biosynthetic process, GO:0004425 - indole-3-glycerol-phosphate synthase activity		
24755	SDRLP11	SDRLP-11, OsSDRLP-11, OsSDRLP11	S-DOMAIN RECEPTOR-LIKE PROTEIN 11	S-Domain receptor-like protein-11	S-DOMAIN RECEPTOR-LIKE PROTEIN 11		1	D-mannose-binding lectin family protein.	 Tolerance and resistance - Stress tolerance	Os01g0783900	LOC_Os01g57490.1				GO:0009651 - response to salt stress, GO:0009751 - response to salicylic acid stimulus, GO:0016020 - membrane	TO:0006001 - salt tolerance	PO:0025121 - pollen sperm cell 
24756	_		_	RNA recognition motif-containing protein			3		 Tolerance and resistance - Stress tolerance	Os03g0286500	LOC_Os03g17760.1				GO:0003730 - mRNA 3'-UTR binding, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24757	_		_	caleosin-related protein/ABA-induced protein, caleosin-related protein, ABA-induced protein			2		 Tolerance and resistance - Stress tolerance	Os02g0734400	LOC_Os02g50140.1				GO:0004497 - monooxygenase activity, GO:0005509 - calcium ion binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24758	_		_	pentatricopeptide protein			8			Os08g0153600	LOC_Os08g05750.1				GO:0008270 - zinc ion binding		
24759	SDRLK1	SDRLK-1, OsSDRLK-1, OsSDRLK1	S-DOMAIN RECEPTOR LIKE KINASE 1	S-Domain receptor like kinase-1	S-DOMAIN RECEPTOR LIKE KINASE 1		1	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0668400	LOC_Os01g47810.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0002229 - defense response to oomycetes, GO:0042742 - defense response to bacterium	TO:0000255 - sheath blight disease resistance	PO:0009030 - carpel , PO:0020094 - plant egg cell 
24761	SDRLK3	SDRLK-3, OsSDRLK-3, OsSDRLK3	S-DOMAIN RECEPTOR LIKE KINASE 3	S-Domain receptor like kinase-3	S-DOMAIN RECEPTOR LIKE KINASE 3		1	AY327041. GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0784700	LOC_Os01g57560.1				GO:0042742 - defense response to bacterium, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance	PO:0009046 - flower , PO:0025034 - leaf 
24762	SDRLK2	SDRLK-2, OsSDRLK-2, OsSDRLK2	S-DOMAIN RECEPTOR LIKE KINASE 2	S-Domain receptor like kinase-2	S-DOMAIN RECEPTOR LIKE KINASE 2		1	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0668901	LOC_Os01g47840.1				GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0050832 - defense response to fungus, GO:0030912 - response to deep water, GO:0005886 - plasma membrane, GO:0009413 - response to flooding	TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000524 - submergence tolerance	PO:0009046 - flower 
24763	SDRLK4	SDRLK-4, OsSDRLK-4, OsSDRLK4	S-DOMAIN RECEPTOR LIKE KINASE 4	S-Domain receptor like kinase-4	S-DOMAIN RECEPTOR LIKE KINASE 4		5	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0501400	LOC_Os05g42210.1				GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane	TO:0000524 - submergence tolerance	PO:0009010 - seed 
24764	SDRLK5	SDRLK-5, OsSDRLK-5, OsSDRLK5	S-DOMAIN RECEPTOR LIKE KINASE 5	S-Domain receptor like kinase-5	S-DOMAIN RECEPTOR LIKE KINASE 5		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0575400	LOC_Os06g37750.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	PO:0009005 - root , PO:0009046 - flower 
24765	SDRLK6	SDRLK-6, OsSDRLK-6, OsSDRLK6	S-DOMAIN RECEPTOR LIKE KINASE 6	S-Domain receptor like kinase-6	S-DOMAIN RECEPTOR LIKE KINASE 6		7	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0551300	LOC_Os07g36590.1				GO:0006468 - protein amino acid phosphorylation, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0000175 - bacterial blight disease resistance, TO:0000524 - submergence tolerance, TO:0000276 - drought tolerance	
24766	SDRLK7	SDRLK-7, OsSDRLK-7, OsSDRLK7	S-DOMAIN RECEPTOR LIKE KINASE 7	S-Domain receptor like kinase-7	S-DOMAIN RECEPTOR LIKE KINASE 7		11	TO:0000770: bacterial blight disease resistance. GO:1900426: positive regulation of defense response to bacterium.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os11g0133001	LOC_Os11g03820.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity	TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000315 - bacterial disease resistance	PO:0009006 - shoot system , PO:0009010 - seed 
24767	SDRLK8	SDRLK-8, OsSDRLK-8, OsSDRLK8	S-DOMAIN RECEPTOR LIKE KINASE 8	S-Domain receptor like kinase-8	S-DOMAIN RECEPTOR LIKE KINASE 8		12	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os12g0130200	LOC_Os12g03640.1				GO:0051607 - defense response to virus, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0004672 - protein kinase activity	TO:0000148 - viral disease resistance, TO:0000315 - bacterial disease resistance	PO:0009005 - root , PO:0009046 - flower 
24768	SDRLK9	SDRLK-9, OsSDRLK-9, OsSDRLK9	S-DOMAIN RECEPTOR LIKE KINASE 9	S-Domain receptor like kinase-9	S-DOMAIN RECEPTOR LIKE KINASE 9		3	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0221700	LOC_Os03g12150.1				GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0030246 - carbohydrate binding	TO:0000315 - bacterial disease resistance, TO:0000524 - submergence tolerance	PO:0009006 - shoot system 
24769	SDRLK10	SDRLK-10, OsSDRLK-10, OsSDRLK10	S-DOMAIN RECEPTOR LIKE KINASE 10	S-Domain receptor like kinase-10	S-DOMAIN RECEPTOR LIKE KINASE 10		12	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0527700	LOC_Os12g34320.2, LOC_Os12g34320.1				GO:0005524 - ATP binding, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0000303 - response to superoxide, GO:0030246 - carbohydrate binding, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane	TO:0000524 - submergence tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance	PO:0020094 - plant egg cell , PO:0009030 - carpel 
24770	SDRLK11	SDRLK-11, OsSDRLK-11, OsSDRLK11	S-DOMAIN RECEPTOR LIKE KINASE 11	S-Domain receptor like kinase-11	S-DOMAIN RECEPTOR LIKE KINASE 11		1	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0155200	LOC_Os01g06240.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0042742 - defense response to bacterium, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0005524 - ATP binding	TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009010 - seed 
24771	SDRLK12	SDRLK-12, OsSDRLK-12, OsSDRLK12	S-DOMAIN RECEPTOR LIKE KINASE 12	S-Domain receptor like kinase-12	S-DOMAIN RECEPTOR LIKE KINASE 12		1	TO:0000770: bacterial blight disease resistance.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0668600	LOC_Os01g47820.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000315 - bacterial disease resistance	PO:0009046 - flower , PO:0009005 - root 
24772	SDRLK13	SDRLK-13, OsSDRLK-13, OsSDRLK13	S-DOMAIN RECEPTOR LIKE KINASE 13	S-Domain receptor like kinase-13	S-DOMAIN RECEPTOR LIKE KINASE 13		1		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0670100	LOC_Os01g48000.1				GO:0009413 - response to flooding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance	PO:0009005 - root , PO:0009006 - shoot system 
24773	SDRLK14	SDRLK-14, OsSDRLK-14, OsSDRLK14	S-DOMAIN RECEPTOR LIKE KINASE 14	S-Domain receptor like kinase-14	S-DOMAIN RECEPTOR LIKE KINASE 14		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0670600	LOC_Os01g48040.1				GO:0006468 - protein amino acid phosphorylation, GO:0030912 - response to deep water, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0009413 - response to flooding, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen	TO:0000524 - submergence tolerance	PO:0009005 - root , PO:0009010 - seed , PO:0025034 - leaf , PO:0009046 - flower 
24774	SDRLK15	SDRLK-15, OsSDRLK-15, OsSDRLK15	S-DOMAIN RECEPTOR LIKE KINASE 15	S-Domain receptor like kinase-15	S-DOMAIN RECEPTOR LIKE KINASE 15		1	GO:0106310: protein serine kinase activity.	 Biochemical character	Os01g0784200	LOC_Os01g57510.1				GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding		PO:0025280 - microgametophyte 
24775	SDRLK16	SDRLK-16, OsSDRLK-16, OsSDRLK16	S-DOMAIN RECEPTOR LIKE KINASE 16	S-Domain receptor like kinase-16	S-DOMAIN RECEPTOR LIKE KINASE 16		1		 Biochemical character	Os01g0870400	LOC_Os01g65010.1				GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		PO:0025034 - leaf 
24776	SDRLK17	SDRLK-17, OsSDRLK-17, OsSDRLK17	S-DOMAIN RECEPTOR LIKE KINASE 17	S-Domain receptor like kinase-17	S-DOMAIN RECEPTOR LIKE KINASE 17		1	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0885700	LOC_Os01g66250.1				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009046 - flower , PO:0025034 - leaf 
24777	SDRLK18	SDRLK-18, OsSDRLK-18, OsSDRLK18	S-DOMAIN RECEPTOR LIKE KINASE 18	S-Domain receptor like kinase-18	S-DOMAIN RECEPTOR LIKE KINASE 18		1	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0889900	LOC_Os01g66610.1				GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0030912 - response to deep water, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000315 - bacterial disease resistance, TO:0000524 - submergence tolerance, TO:0000255 - sheath blight disease resistance, TO:0000303 - cold tolerance	
24778	SDRLK19	SDRLK-19, OsSDRLK-19, OsSDRLK19	S-DOMAIN RECEPTOR LIKE KINASE 19	S-Domain receptor like kinase-19	S-DOMAIN RECEPTOR LIKE KINASE 19		1	GO:0106310: protein serine kinase activity.	 Biochemical character	Os01g0890200	LOC_Os01g66640.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen		PO:0009046 - flower 
24779	SDRLK20	SDRLK-20, OsSDRLK-20, OsSDRLK20	S-DOMAIN RECEPTOR LIKE KINASE 20	S-Domain receptor like kinase-20	S-DOMAIN RECEPTOR LIKE KINASE 20		3	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0556600	LOC_Os03g35600.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0030246 - carbohydrate binding, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane	TO:0000148 - viral disease resistance, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance	PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009005 - root , PO:0009010 - seed , PO:0009046 - flower 
24780	SDRLK22	SDRLK-22, OsSDRLK-22, OsSDRLK22	S-DOMAIN RECEPTOR LIKE KINASE 22	S-Domain receptor like kinase-22	S-DOMAIN RECEPTOR LIKE KINASE 22		4	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0103700	LOC_Os04g01320.1				GO:0016021 - integral to membrane, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000175 - bacterial blight disease resistance	PO:0009046 - flower , PO:0009005 - root 
24781	SDRLK24	SDRLK-24, OsSDRLK-24, OsSDRLK24	S-DOMAIN RECEPTOR LIKE KINASE 24	S-Domain receptor like kinase-24	S-DOMAIN RECEPTOR LIKE KINASE 24		4	GO:0106310: protein serine kinase activity.	 Biochemical character	Os04g0303100	LOC_Os04g23700.1				GO:0006468 - protein amino acid phosphorylation, GO:0016020 - membrane, GO:0004672 - protein kinase activity, GO:0048544 - recognition of pollen, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane		PO:0009030 - carpel , PO:0020094 - plant egg cell 
24782	SDRLK25	SDRLK-25, OsSDRLK-25, OsSDRLK25	S-DOMAIN RECEPTOR LIKE KINASE 25	S-Domain receptor like kinase-25	S-DOMAIN RECEPTOR LIKE KINASE 25		4		 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0356600	LOC_Os04g28780.1				GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane	TO:0000175 - bacterial blight disease resistance	PO:0025034 - leaf , PO:0009005 - root 
24783	SDRLK26	SDRLK-26, OsSDRLK-26, OsSDRLK26	S-DOMAIN RECEPTOR LIKE KINASE 26	S-Domain receptor like kinase-26	S-DOMAIN RECEPTOR LIKE KINASE 26		4	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0420033	LOC_Os04g34290.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000276 - drought tolerance	PO:0025034 - leaf 
24784	SDRLK27	SDRLK-27, OsSDRLK-27, OsSDRLK27	S-DOMAIN RECEPTOR LIKE KINASE 27	S-Domain receptor like kinase-27	S-DOMAIN RECEPTOR LIKE KINASE 27		4	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0420600	LOC_Os04g34330.1				GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0030912 - response to deep water, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0025121 - pollen sperm cell 
24785	SDRLK28	SDRLK-28, OsSDRLK-28, OsSDRLK28	S-DOMAIN RECEPTOR LIKE KINASE 28	S-Domain receptor like kinase-28	S-DOMAIN RECEPTOR LIKE KINASE 28		4		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0420900	LOC_Os04g34370.1				GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0009414 - response to water deprivation, GO:0051607 - defense response to virus, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000148 - viral disease resistance, TO:0000276 - drought tolerance	PO:0025121 - pollen sperm cell 
24786	SDRLK30	SDRLK-30, OsSDRLK-30, OsSDRLK30	S-DOMAIN RECEPTOR LIKE KINASE 30	S-Domain receptor like kinase-30	S-DOMAIN RECEPTOR LIKE KINASE 30		4	AF403128. GO:0106310: protein serine kinase activity.	 Biochemical character	Os04g0632500	LOC_Os04g54002.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity		PO:0025034 - leaf , PO:0009010 - seed , PO:0009046 - flower , PO:0009005 - root , PO:0009006 - shoot system , PO:0000032 - tetrad of microspores 
24787	SDRLK31	SDRLK-31, OsSDRLK-31, OsSDRLK31	S-DOMAIN RECEPTOR LIKE KINASE 31	S-Domain receptor like kinase-31	S-DOMAIN RECEPTOR LIKE KINASE 31		4	GO:0106310: protein serine kinase activity.	 Biochemical character	Os04g0633900	LOC_Os04g54130.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation		PO:0009005 - root , PO:0009046 - flower 
24788	SDRLK32	SDRLK-32, OsSDRLK-32, OsSDRLK32	S-DOMAIN RECEPTOR LIKE KINASE 32	S-Domain receptor like kinase-32	S-DOMAIN RECEPTOR LIKE KINASE 32		4	GO:0106310: protein serine kinase activity.	 Biochemical character	Os04g0634000	LOC_Os04g54140.1				GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation		PO:0009046 - flower , PO:0009005 - root , PO:0009006 - shoot system , PO:0025034 - leaf 
24789	SDRLK33	SDRLK-33, OsSDRLK-33, OsSDRLK33	S-DOMAIN RECEPTOR LIKE KINASE 33	S-Domain receptor like kinase-33	S-DOMAIN RECEPTOR LIKE KINASE 33		4	GO:0106310: protein serine kinase activity.	 Biochemical character	Os04g0655000	LOC_Os04g56090.1				GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen		PO:0009005 - root , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009046 - flower 
24790	SDRLK34	SDRLK-34, OsSDRLK-34, OsSDRLK34	S-DOMAIN RECEPTOR LIKE KINASE 34	S-Domain receptor like kinase-34	S-DOMAIN RECEPTOR LIKE KINASE 34		5		 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0165900	LOC_Os05g07300.2, LOC_Os05g07300.1				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane	TO:0000175 - bacterial blight disease resistance	
24791	SDRLK35	SDRLK-35, OsSDRLK-35, OsSDRLK35	S-DOMAIN RECEPTOR LIKE KINASE 35	S-Domain receptor like kinase-35	S-DOMAIN RECEPTOR LIKE KINASE 35		5		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0166300	LOC_Os05g07420.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance	PO:0009005 - root , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009046 - flower 
24792	SDRLK36	SDRLK-36, OsSDRLK-36, OsSDRLK36	S-DOMAIN RECEPTOR LIKE KINASE 36	S-Domain receptor like kinase-36	S-DOMAIN RECEPTOR LIKE KINASE 36		5	GO:0106310: protein serine kinase activity.	 Biochemical character	Os05g0166600	LOC_Os05g07450.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		PO:0009006 - shoot system , PO:0000032 - tetrad of microspores , PO:0009046 - flower , PO:0009005 - root , PO:0025034 - leaf 
24793	SDRLK39	SDRLK-39, OsSDRLK-39, OsSDRLK39	S-DOMAIN RECEPTOR LIKE KINASE 39	S-Domain receptor like kinase-39	S-DOMAIN RECEPTOR LIKE KINASE 39		7	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0550500	LOC_Os07g36544.2, LOC_Os07g36544.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane	TO:0000255 - sheath blight disease resistance	PO:0005052 - plant callus 
24794	SDRLK40	SDRLK-40, OsSDRLK-40, OsSDRLK40	S-DOMAIN RECEPTOR LIKE KINASE 40	S-Domain receptor like kinase-40	S-DOMAIN RECEPTOR LIKE KINASE 40		7	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0550900	LOC_Os07g36570.1				GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0051607 - defense response to virus, GO:0009414 - response to water deprivation, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity	TO:0000315 - bacterial disease resistance, TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance	PO:0009046 - flower , PO:0009005 - root 
24795	SDRLK41	SDRLK-41, OsSDRLK-41, OsSDRLK41	S-DOMAIN RECEPTOR LIKE KINASE 41	S-Domain receptor like kinase-41	S-DOMAIN RECEPTOR LIKE KINASE 41		7		 Biochemical character	Os07g0553633	LOC_Os07g36780.1				GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane		PO:0009030 - carpel 
24796	SDRLK43	SDRLK-43, OsSDRLK-43, OsSDRLK43	S-DOMAIN RECEPTOR LIKE KINASE 43	S-Domain receptor like kinase-43	S-DOMAIN RECEPTOR LIKE KINASE 43		9	GO:0106310: protein serine kinase activity.	 Biochemical character	Os09g0551500	LOC_Os09g37890.1				GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen		PO:0009010 - seed , PO:0009046 - flower 
24797	SDRLK44	SDRLK-44, OsSDRLK-44, OsSDRLK44	S-DOMAIN RECEPTOR LIKE KINASE 44	S-Domain receptor like kinase-44	S-DOMAIN RECEPTOR LIKE KINASE 44		10		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os10g0101000	LOC_Os10g01100.1				GO:0009413 - response to flooding, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0030912 - response to deep water	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance	PO:0009005 - root , PO:0009010 - seed 
24798	SDRLK45	SDRLK-45, OsSDRLK-45, OsSDRLK45	S-DOMAIN RECEPTOR LIKE KINASE 45	S-Domain receptor like kinase-45	S-DOMAIN RECEPTOR LIKE KINASE 45		10		 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0342300	LOC_Os10g20160.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0042742 - defense response to bacterium, GO:0030246 - carbohydrate binding, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000175 - bacterial blight disease resistance	PO:0009005 - root , PO:0009046 - flower 
24799	SDRLK47	SDRLK-47, OsSDRLK-47, OsSDRLK47	S-DOMAIN RECEPTOR LIKE KINASE 47	S-Domain receptor like kinase-47	S-DOMAIN RECEPTOR LIKE KINASE 47		1	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0223900	LOC_Os01g12420.1				GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium	TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance	PO:0009010 - seed , PO:0009006 - shoot system , PO:0009046 - flower , PO:0009005 - root 
24800	SDRLK48	SDRLK-48, OsSDRLK-48, OsSDRLK48	S-DOMAIN RECEPTOR LIKE KINASE 48	S-Domain receptor like kinase-48	S-DOMAIN RECEPTOR LIKE KINASE 48		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0224000	LOC_Os01g12430.1				GO:0005886 - plasma membrane, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
24801	SDRLK49	SDRLK-49, OsSDRLK-49, OsSDRLK49	S-DOMAIN RECEPTOR LIKE KINASE 49	S-Domain receptor like kinase-49	S-DOMAIN RECEPTOR LIKE KINASE 49		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0587400	LOC_Os01g40499.2, LOC_Os01g40499.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation	TO:0000524 - submergence tolerance	PO:0009030 - carpel , PO:0020094 - plant egg cell 
24802	SDRLK50	SDRLK-50, OsSDRLK-50, OsSDRLK50	S-DOMAIN RECEPTOR LIKE KINASE 50	S-Domain receptor like kinase-50	S-DOMAIN RECEPTOR LIKE KINASE 50		1	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os01g0890600	LOC_Os01g66680.1				GO:0051607 - defense response to virus, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0048544 - recognition of pollen, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016020 - membrane, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane	TO:0000255 - sheath blight disease resistance, TO:0000303 - cold tolerance, TO:0000148 - viral disease resistance	PO:0009046 - flower , PO:0025034 - leaf , PO:0009006 - shoot system 
24803	SDRLK51	SDRLK-51, OsSDRLK-51, OsSDRLK51	S-DOMAIN RECEPTOR LIKE KINASE 51	S-Domain receptor like kinase-51	S-DOMAIN RECEPTOR LIKE KINASE 51		4	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0419700	LOC_Os04g34250.1				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity, GO:0016020 - membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0030912 - response to deep water	TO:0000524 - submergence tolerance	PO:0009006 - shoot system , PO:0025034 - leaf 
24804	SDRLK53	SDRLK-53, OsSDRLK-53, OsSDRLK53	S-DOMAIN RECEPTOR LIKE KINASE 53	S-Domain receptor like kinase-53	S-DOMAIN RECEPTOR LIKE KINASE 53		4	GO:0106310: protein serine kinase activity. TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0633200	LOC_Os04g54070.1				GO:0048544 - recognition of pollen, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance	PO:0025034 - leaf , PO:0009046 - flower 
24805	SDRLK54	SDRLK-54, OsSDRLK-54, OsSDRLK54	S-DOMAIN RECEPTOR LIKE KINASE 54	S-Domain receptor like kinase-54	S-DOMAIN RECEPTOR LIKE KINASE 54		4	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0633300	LOC_Os04g54080.1				GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity	TO:0000303 - cold tolerance	PO:0009010 - seed 
24806	SDRLK55	SDRLK-55, OsSDRLK-55, OsSDRLK55	S-DOMAIN RECEPTOR LIKE KINASE 55	S-Domain receptor like kinase-55	S-DOMAIN RECEPTOR LIKE KINASE 55		4	GO:0106310: protein serine kinase activity. TO:0000770: bacterial blight disease resistance.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0654800	LOC_Os04g56080.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0048544 - recognition of pollen, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000315 - bacterial disease resistance	
24807	SDRLK57	SDRLK-57, OsSDRLK-57, OsSDRLK57	S-DOMAIN RECEPTOR LIKE KINASE 57	S-Domain receptor like kinase-57	S-DOMAIN RECEPTOR LIKE KINASE 57		12	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os12g0130300	LOC_Os12g03650.1				GO:0009414 - response to water deprivation, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0051607 - defense response to virus, GO:0005886 - plasma membrane, GO:0030246 - carbohydrate binding	TO:0000276 - drought tolerance, TO:0000148 - viral disease resistance	PO:0009010 - seed , PO:0025034 - leaf , PO:0009006 - shoot system 
24808	SDRLK58	SDRLK-58, OsSDRLK-58, OsSDRLK58	S-DOMAIN RECEPTOR LIKE KINASE 58	S-Domain receptor like kinase-58	S-DOMAIN RECEPTOR LIKE KINASE 58		11		 Tolerance and resistance - Disease resistance,  Biochemical character	Os11g0133100	LOC_Os11g03840.1				GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance	PO:0009046 - flower , PO:0009010 - seed , PO:0009006 - shoot system 
24809	SDRLK59	SDRLK-59, OsSDRLK-59, OsSDRLK59	S-DOMAIN RECEPTOR LIKE KINASE 59	S-Domain receptor like kinase-59	S-DOMAIN RECEPTOR LIKE KINASE 59		2	GO:0106310: protein serine kinase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0767400	LOC_Os02g52850.1				GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0030912 - response to deep water, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0009046 - flower , PO:0009005 - root 
24810	SDRLK60	SDRLK-60, OsSDRLK-60, OsSDRLK60	S-DOMAIN RECEPTOR LIKE KINASE 60	S-Domain receptor like kinase-60	S-DOMAIN RECEPTOR LIKE KINASE 60		3		 Biochemical character	Os03g0828800	LOC_Os03g61310.1				GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0030246 - carbohydrate binding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane		PO:0009010 - seed , PO:0009046 - flower , PO:0025034 - leaf , PO:0009006 - shoot system 
24811	SDRLK61	SDRLK-61, OsSDRLK-61, OsSDRLK61	S-DOMAIN RECEPTOR LIKE KINASE 61	S-Domain receptor like kinase-61	S-DOMAIN RECEPTOR LIKE KINASE 61		4		 Biochemical character	Os04g0475100	LOC_Os04g39910.1				GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane		
24812	SDRLK62	SDRLK-62, OsSDRLK-62, OsSDRLK62	S-DOMAIN RECEPTOR LIKE KINASE 62	S-Domain receptor like kinase-62	S-DOMAIN RECEPTOR LIKE KINASE 62		4	TO:0000770: bacterial blight disease resistance.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os04g0475200	LOC_Os04g39930.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005524 - ATP binding	TO:0000315 - bacterial disease resistance	PO:0009006 - shoot system , PO:0009046 - flower , PO:0025034 - leaf , PO:0009010 - seed 
24813	SDRLK63	SDRLK-63, OsSDRLK-63, OsSDRLK63	S-DOMAIN RECEPTOR LIKE KINASE 63	S-Domain receptor like kinase-63	S-DOMAIN RECEPTOR LIKE KINASE 63		6		 Biochemical character	Os06g0619600	LOC_Os06g41510.1				GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		
24814	SDRLK65	SDRLK-65, OsSDRLK-65, OsSDRLK65	S-DOMAIN RECEPTOR LIKE KINASE 65	S-Domain receptor like kinase-65	S-DOMAIN RECEPTOR LIKE KINASE 65		9	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os09g0454900	LOC_Os09g28180.1				GO:0009413 - response to flooding, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0030912 - response to deep water, GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane	TO:0000148 - viral disease resistance, TO:0000524 - submergence tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0009046 - flower , PO:0009010 - seed , PO:0009005 - root 
24815	SDRLK66	SDRLK-66, OsSDRLK-66, OsSDRLK66	S-DOMAIN RECEPTOR LIKE KINASE 66	S-Domain receptor like kinase-66	S-DOMAIN RECEPTOR LIKE KINASE 66		9	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0164900	LOC_Os06g06940.1, LOC_Os06g06930.1				GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance	PO:0009030 - carpel , PO:0020094 - plant egg cell 
24816	SDRLK67	SDRLK-67, OsSDRLK-67, OsSDRLK67	S-DOMAIN RECEPTOR LIKE KINASE 67	S-Domain receptor like kinase-67	S-DOMAIN RECEPTOR LIKE KINASE 67		1	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0222800	LOC_Os01g12290.1				GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation, GO:0016021 - integral to membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance	PO:0009046 - flower , PO:0009010 - seed , PO:0009005 - root , PO:0009006 - shoot system 
24817	SDRLK68	SDRLK-68, OsSDRLK-68, OsSDRLK68	S-DOMAIN RECEPTOR LIKE KINASE 68	S-Domain receptor like kinase-68	S-DOMAIN RECEPTOR LIKE KINASE 68		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0223700	LOC_Os01g12400.2				GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
24818	SDRLK69	SDRLK-69, OsSDRLK-69, OsSDRLK69	S-DOMAIN RECEPTOR LIKE KINASE 69	S-Domain receptor like kinase-69	S-DOMAIN RECEPTOR LIKE KINASE 69		5		 Biochemical character	Os05g0416701	LOC_Os05g34390.1				GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation		
24819	SDRLK70	SDRLK-70, OsSDRLK-70, OsSDRLK70	S-DOMAIN RECEPTOR LIKE KINASE 70	S-Domain receptor like kinase-70	S-DOMAIN RECEPTOR LIKE KINASE 70		1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0871000	LOC_Os01g65060.1				GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance	
24820	SDRLK71	SDRLK-71, OsSDRLK-71, OsSDRLK71, OsPLIM2b, PLIM2b	S-DOMAIN RECEPTOR LIKE KINASE 71	S-Domain receptor like kinase-71, pollen-specific LIM protein 2b	S-DOMAIN RECEPTOR LIKE KINASE 71		4	AF403129.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0632600	LOC_Os04g54010.1				GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0016021 - integral to membrane	TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0009046 - flower , PO:0025281 - pollen , PO:0009010 - seed , PO:0009005 - root 
24821	SDRLK72	SDRLK-72, OsSDRLK-72, OsSDRLK72	S-DOMAIN RECEPTOR LIKE KINASE 72	S-Domain receptor like kinase-72	S-DOMAIN RECEPTOR LIKE KINASE 72		6		 Biochemical character	Os06g0574550	LOC_Os06g37670.1				GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity		
24822	SDRLP1	SDRLP-1, OsSDRLP-1, OsSDRLP1	S-DOMAIN RECEPTOR LIKE PROTEIN 1	S-Domain receptor like protein-1	S-DOMAIN RECEPTOR LIKE PROTEIN 1		8			Os08g0179150	LOC_Os08g08140.1				GO:0016020 - membrane, GO:0048544 - recognition of pollen, GO:0005576 - extracellular region		PO:0009046 - flower 
24823	SDRLP2	SDRLP-2, OsSDRLP-2, OsSDRLP2	S-DOMAIN RECEPTOR LIKE PROTEIN 2	S-Domain receptor like protein-2	S-DOMAIN RECEPTOR LIKE PROTEIN 2		9		 Tolerance and resistance - Stress tolerance	Os09g0551150	LOC_Os09g37840.1				GO:0006979 - response to oxidative stress, GO:0048544 - recognition of pollen, GO:0016020 - membrane	TO:0002657 - oxidative stress	
24824	SDRLP4	SDRLP-4, OsSDRLP-4, OsSDRLP4	S-DOMAIN RECEPTOR LIKE PROTEIN 4	S-Domain receptor like protein-4	S-DOMAIN RECEPTOR LIKE PROTEIN 4		1		 Biochemical character	Os01g0642700	LOC_Os01g45520.1				GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0016020 - membrane		PO:0009046 - flower , PO:0009006 - shoot system , PO:0009010 - seed 
24825	SDRLP6	SDRLP-6, OsSDRLP-6, OsSDRLP6	S-DOMAIN RECEPTOR LIKE PROTEIN 6	S-Domain receptor like protein-6	S-DOMAIN RECEPTOR LIKE PROTEIN 6		12		 Tolerance and resistance - Stress tolerance	Os12g0130500	LOC_Os12g03670.1				GO:0048544 - recognition of pollen, GO:0016021 - integral to membrane, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0005886 - plasma membrane	TO:0000524 - submergence tolerance	PO:0009005 - root 
24826	SDRLP7	SDRLP-7, OsSDRLP-7, OsSDRLP7	S-DOMAIN RECEPTOR LIKE PROTEIN 7	S-Domain receptor like protein-7	S-DOMAIN RECEPTOR LIKE PROTEIN 7		9	GO:0106310: protein serine kinase activity.	 Biochemical character	Os09g0550300	LOC_Os09g37780.1				GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		PO:0009005 - root 
24827	SDRLP8	SDRLP-8, OsSDRLP-8, OsSDRLP8	S-DOMAIN RECEPTOR LIKE PROTEIN 8	S-Domain receptor like protein-8	S-DOMAIN RECEPTOR LIKE PROTEIN 8		3	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0422800	LOC_Os03g30890.2, LOC_Os03g30890.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0048544 - recognition of pollen, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0009046 - flower 
24828	SDRLP12	SDRLP-12, OsSDRLP-12, OsSDRLP12	S-DOMAIN RECEPTOR LIKE PROTEIN 12	S-Domain receptor like protein-12	S-DOMAIN RECEPTOR LIKE PROTEIN 12		12	GO:0106310: protein serine kinase activity.	 Biochemical character	Os12g0177800	LOC_Os12g07800.1				GO:0048544 - recognition of pollen, GO:0016021 - integral to membrane, GO:0009536 - plastid, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding		PO:0009046 - flower 
24829	SDK1	OsSDK1	S-DOMAIN KINASE 1	S-Domain kinase-1	S-DOMAIN KINASE 1		9	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0551201	LOC_Os09g37840.1				GO:0042742 - defense response to bacterium, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0048544 - recognition of pollen	TO:0000315 - bacterial disease resistance	
24830	SDK8	OsSDK8	S-DOMAIN KINASE 8	S-Domain kinase-8	S-DOMAIN KINASE 8		4		 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0632901	LOC_Os04g54020.1				GO:0005524 - ATP binding, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000255 - sheath blight disease resistance	PO:0025034 - leaf , PO:0009046 - flower 
24831	SDK10	OsSDK10	S-DOMAIN KINASE 10	S-Domain kinase-10	S-DOMAIN KINASE 10		4	GO:0106310: protein serine kinase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0634400	LOC_Os04g54180.1				GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0048544 - recognition of pollen, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation	TO:0000276 - drought tolerance	PO:0009046 - flower , PO:0009005 - root 
24832	SDK11	OsSDK11	S-DOMAIN KINASE 11	S-Domain kinase-11	S-DOMAIN KINASE 11		9	GO:0106310: protein serine kinase activity.	 Biochemical character	Os09g0551251	LOC_Os09g37840.1				GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0048544 - recognition of pollen, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		PO:0009005 - root 
24833	SDK12	OsSDK12	S-DOMAIN KINASE 12	S-Domain kinase-12	S-DOMAIN KINASE 12		11		 Biochemical character	Os11g0208700					GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0048544 - recognition of pollen, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0004672 - protein kinase activity		PO:0009046 - flower , PO:0009010 - seed , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
24834	MAK1	OsMAK1	MEMBRANE-ASSOCIATED KINASE 1	Membrane-associated kinase-1	MEMBRANE-ASSOCIATED KINASE 1		1	TO:0000770: bacterial blight disease resistance.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0113350	LOC_Os01g02310.1				GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0005886 - plasma membrane, GO:0042742 - defense response to bacterium, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity	TO:0000315 - bacterial disease resistance	PO:0025034 - leaf 
24835	MAK2	OsMAK2	MEMBRANE-ASSOCIATED KINASE 2	Membrane-associated kinase-2	MEMBRANE-ASSOCIATED KINASE 2		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0648600	LOC_Os01g46030.1				GO:0009414 - response to water deprivation, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009010 - seed , PO:0009046 - flower , PO:0009006 - shoot system 
24836	MAK3	OsMAK3	MEMBRANE-ASSOCIATED KINASE 3	Membrane-associated kinase-3	MEMBRANE-ASSOCIATED KINASE 3		2		 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0472700	LOC_Os02g27310.1				GO:0004672 - protein kinase activity, GO:0050832 - defense response to fungus, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005576 - extracellular region, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding	TO:0000255 - sheath blight disease resistance	PO:0009010 - seed , PO:0009005 - root , PO:0009046 - flower , PO:0025034 - leaf 
24837	MAK4	OsMAK4	MEMBRANE-ASSOCIATED KINASE 4	Membrane-associated kinase-4	MEMBRANE-ASSOCIATED KINASE 4		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0142650	LOC_Os06g05070.1				GO:0016021 - integral to membrane, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding	TO:0000303 - cold tolerance	
24838	MAK6	OsMAK6	MEMBRANE-ASSOCIATED KINASE 6	Membrane-associated kinase-6	MEMBRANE-ASSOCIATED KINASE 6		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0496800	LOC_Os06g30130.1, LOC_Os06g30130.2				GO:0016021 - integral to membrane, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding	TO:0000524 - submergence tolerance	
24839	MAK7	OsMAK7	MEMBRANE-ASSOCIATED KINASE 7	Membrane-associated kinase-7	MEMBRANE-ASSOCIATED KINASE 7		6		 Biochemical character	Os06g0551800	LOC_Os06g35850.2, LOC_Os06g35850.1				GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0006468 - protein amino acid phosphorylation		PO:0009046 - flower , PO:0009010 - seed , PO:0009006 - shoot system , PO:0025034 - leaf 
24840	MAK8	OsMAK8	MEMBRANE-ASSOCIATED KINASE 8	Membrane-associated kinase-8	MEMBRANE-ASSOCIATED KINASE 8		6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0575000	LOC_Os06g37690.1				GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0030912 - response to deep water, GO:0002229 - defense response to oomycetes, GO:0042742 - defense response to bacterium, GO:0005886 - plasma membrane, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0009030 - carpel , PO:0020094 - plant egg cell 
24841	MAK9	OsMAK9	MEMBRANE-ASSOCIATED KINASE 9	Membrane-associated kinase-9	MEMBRANE-ASSOCIATED KINASE 9		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0141100	LOC_Os07g04810.1, LOC_Os07g04810.2				GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity	TO:0000524 - submergence tolerance	PO:0009010 - seed , PO:0005052 - plant callus 
24842	MAK10	OsMAK10	MEMBRANE-ASSOCIATED KINASE 10	Membrane-associated kinase-10	MEMBRANE-ASSOCIATED KINASE 10		8		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0179000	LOC_Os08g08140.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0030912 - response to deep water, GO:0009413 - response to flooding, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance	PO:0009046 - flower 
24843	MAK11	OsMAK11	MEMBRANE-ASSOCIATED KINASE 11	Membrane-associated kinase-11	MEMBRANE-ASSOCIATED KINASE 11		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0640700	LOC_Os12g44320.1				GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane, GO:0009409 - response to cold	TO:0000303 - cold tolerance	PO:0009005 - root , PO:0009006 - shoot system , PO:0009046 - flower 
24844	MAK12	OsMAK12	MEMBRANE-ASSOCIATED KINASE 12	Membrane-associated kinase-12	MEMBRANE-ASSOCIATED KINASE 12		7		 Biochemical character	Os07g0301500	LOC_Os07g20610.1				GO:0005886 - plasma membrane, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		PO:0025280 - microgametophyte , PO:0025121 - pollen sperm cell 
24845	_		_	Kinase-like			4		 Biochemical character	Os04g0225250	LOC_Os04g14840.1				GO:0016020 - membrane, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0005739 - mitochondrion		
24846	_		_	Kinase-like			12		 Biochemical character	Os12g0130600	LOC_Os12g03680.1				GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding		
24847	_		_	Kinase-like			12			Os12g0130701	LOC_Os12g03680.1				GO:0005524 - ATP binding		
24848	GNK2RLK1	Gnk2RLK-1, OsGnk2RLK-1, OsGNK2RLK1	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 1	GnK2 domain containing receptor-like kinase-1	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 1		1		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0366300	LOC_Os01g26390.1				GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0009414 - response to water deprivation, GO:0004674 - protein serine/threonine kinase activity	TO:0000276 - drought tolerance	PO:0025034 - leaf 
24849	GNK2RLK3	Gnk2RLK-3, OsGnk2RLK-3, OsGNK2RLK3	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 3	GnK2 domain containing receptor-like kinase-3	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 3		1		 Biochemical character	Os01g0568400	LOC_Os01g38900.1				GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0016021 - integral to membrane		PO:0005052 - plant callus 
24850	GNK2RLK4	Gnk2RLK-4, OsGnk2RLK-4, OsGNK2RLK4	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 4	GnK2 domain containing receptor-like kinase-4	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 4		7	TO:0000770: bacterial blight disease resistance.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0534700	LOC_Os07g35004.1				GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0009413 - response to flooding, GO:0030912 - response to deep water, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance, TO:0000524 - submergence tolerance, TO:0000255 - sheath blight disease resistance	PO:0009010 - seed , PO:0009005 - root 
24851	GNK2RLK5	Gnk2RLK-5, OsGnk2RLK-5, OsGNK2RLK5	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 5	GnK2 domain containing receptor-like kinase-5	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 5		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0535800	LOC_Os07g35140.2, LOC_Os07g35140.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0030912 - response to deep water, GO:0009413 - response to flooding	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance	PO:0009010 - seed , PO:0009006 - shoot system 
24852	GNK2RLK6	Gnk2RLK-6, OsGnk2RLK-6, OsGNK2RLK6	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 6	GnK2 domain containing receptor-like kinase-6	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 6		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0668500	LOC_Os07g47230.1				GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0005524 - ATP binding, GO:0001666 - response to hypoxia, GO:0030912 - response to deep water, GO:0009413 - response to flooding	TO:0000524 - submergence tolerance	PO:0009005 - root , PO:0009006 - shoot system 
24853	GNK2RLK7	Gnk2RLK-7, OsGnk2RLK-7, OsGNK2RLK7	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 7	GnK2 domain containing receptor-like kinase-7	GNK2 DOMAIN CONTAINING RECEPTOR-LIKE KINASE 7		10		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0136400	LOC_Os10g04720.1				GO:0042742 - defense response to bacterium, GO:0009409 - response to cold, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane	TO:0000175 - bacterial blight disease resistance, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009046 - flower , PO:0009010 - seed , PO:0009006 - shoot system 
24854	_		_	cysteine synthase			2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0222100	LOC_Os02g12900.2, LOC_Os02g12900.1				GO:0005737 - cytoplasm, GO:0004124 - cysteine synthase activity, GO:0019344 - cysteine biosynthetic process, GO:0006535 - cysteine biosynthetic process from serine, GO:0042594 - response to starvation, GO:0009970 - cellular response to sulfate starvation	TO:0000007 - sulfur sensitivity	
24855	APK	OsAPK	ADENOSINE 5'-PHOSPHOSULFATE KINASE	APS kinase, adenosine 5'-phosphosulfate kinase	ADENOSINE 5'-PHOSPHOSULFATE KINASE		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0202001	LOC_Os03g10500.1				GO:0016310 - phosphorylation, GO:0009970 - cellular response to sulfate starvation, GO:0042594 - response to starvation, GO:0004020 - adenylylsulfate kinase activity, GO:0005524 - ATP binding, GO:0070814 - hydrogen sulfide biosynthetic process, GO:0000103 - sulfate assimilation	TO:0000007 - sulfur sensitivity	
24856	_	OsATPS, ATPS	_	ATP sulfurylase			4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0111200	LOC_Os04g02050.1, LOC_Os04g02050.2				GO:0042594 - response to starvation, GO:0009970 - cellular response to sulfate starvation, GO:0004781 - sulfate adenylyltransferase (ATP) activity	TO:0000007 - sulfur sensitivity	
24857	_	OsOAS-TL, OAS-TL	_	O-acetylserine (thiol) lyase			6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0564700	LOC_Os06g36880.1				GO:0009970 - cellular response to sulfate starvation, GO:0042594 - response to starvation, GO:0004124 - cysteine synthase activity, GO:0006535 - cysteine biosynthetic process from serine, GO:0005737 - cytoplasm, GO:0019344 - cysteine biosynthetic process	TO:0000007 - sulfur sensitivity	
24858	_	OsOAS-TL, OAS-TL	_	O-acetylserine (thiol) lyase			6	AF073698.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0149700	LOC_Os06g05690.1				GO:0019344 - cysteine biosynthetic process, GO:0005737 - cytoplasm, GO:0006535 - cysteine biosynthetic process from serine, GO:0004124 - cysteine synthase activity, GO:0042594 - response to starvation, GO:0009970 - cellular response to sulfate starvation	TO:0000007 - sulfur sensitivity	
24859	_	OsOAS-TL, OAS-TL	_	O-acetylserine (thiol) lyase			6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0564500	LOC_Os06g36840.1				GO:0019344 - cysteine biosynthetic process, GO:0005737 - cytoplasm, GO:0006535 - cysteine biosynthetic process from serine, GO:0004124 - cysteine synthase activity, GO:0042594 - response to starvation, GO:0009970 - cellular response to sulfate starvation	TO:0000007 - sulfur sensitivity	
24860	MDH4.1	OsMDH4.1, OsLdh5, Ldh5	MALATE DEHYDROGENASE 4.1	Lactate Dehydrogenase 5	MALATE DEHYDROGENASE 4.1		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0551200	LOC_Os04g46560.1				GO:0009735 - response to cytokinin stimulus, GO:0005783 - endoplasmic reticulum, GO:0006107 - oxaloacetate metabolic process, GO:0006734 - NADH metabolic process, GO:0030060 - L-malate dehydrogenase activity, GO:0001666 - response to hypoxia, GO:0006950 - response to stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009408 - response to heat, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0006108 - malate metabolic process, GO:0006099 - tricarboxylic acid cycle, GO:0009409 - response to cold, GO:0046685 - response to arsenic	TO:0006001 - salt tolerance, TO:0000168 - abiotic stress trait, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance	
24861	MDH5.1	OsMDH5.1, OsLdh6, Ldh6	MALATE DEHYDROGENASE 5.1	Lactate Dehydrogenase 6	MALATE DEHYDROGENASE 5.1		5	PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0574400	LOC_Os05g49880.1, LOC_Os05g49880.2				GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0005739 - mitochondrion, GO:0034059 - response to anoxia, GO:0006950 - response to stress, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0009739 - response to gibberellin stimulus, GO:0030060 - L-malate dehydrogenase activity, GO:0006108 - malate metabolic process, GO:0006099 - tricarboxylic acid cycle, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0000259 - heat tolerance, TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance	PO:0020104 - leaf sheath , PO:0009009 - plant embryo , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0005052 - plant callus , PO:0009066 - anther , PO:0009029 - stamen , PO:0009030 - carpel , PO:0025034 - leaf , PO:0000025 - root tip , PO:0009005 - root , PO:0020103 - flag leaf 
24862	MDH6.1	OsMDH6.1, OsLdh7, Ldh7	MALATE DEHYDROGENASE 6.1	Lactate Dehydrogenase 7	MALATE DEHYDROGENASE 6.1		6	GO:0097501: stress response to metal ion. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0104900	LOC_Os06g01590.1				GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0009735 - response to cytokinin stimulus, GO:0046686 - response to cadmium ion, GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0010038 - response to metal ion, GO:0034059 - response to anoxia, GO:0004459 - L-lactate dehydrogenase activity, GO:0019752 - carboxylic acid metabolic process, GO:0005634 - nucleus, GO:0001666 - response to hypoxia	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000015 - oxygen sensitivity, TO:0000524 - submergence tolerance, TO:0000303 - cold tolerance	PO:0000025 - root tip , PO:0009005 - root 
24863	MDH7.1	OsMDH7.1, OsLdh8, Ldh8	MALATE DEHYDROGENASE 7.1	Lactate Dehydrogenase 8	MALATE DEHYDROGENASE 7.1		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0630800	LOC_Os07g43700.2, LOC_Os07g43700.1				GO:0005737 - cytoplasm, GO:0034059 - response to anoxia, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0005634 - nucleus, GO:0030060 - L-malate dehydrogenase activity, GO:0006108 - malate metabolic process, GO:0006099 - tricarboxylic acid cycle, GO:0001666 - response to hypoxia, GO:0006950 - response to stress, GO:0009739 - response to gibberellin stimulus, GO:0009413 - response to flooding, GO:0009651 - response to salt stress	TO:0000015 - oxygen sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000524 - submergence tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000303 - cold tolerance, TO:0000168 - abiotic stress trait	PO:0025034 - leaf , PO:0009047 - stem , PO:0020104 - leaf sheath 
24864	MDH8.2	OsMDH8.2, OsLdh10, Ldh10	MALATE DEHYDROGENASE 8.2	Lactate Dehydrogenase 10	MALATE DEHYDROGENASE 8.2		8	GO:0097501: stress response to metal ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0562100	LOC_Os08g44810.1				GO:0046685 - response to arsenic, GO:0009409 - response to cold, GO:0034059 - response to anoxia, GO:0030060 - L-malate dehydrogenase activity, GO:0006108 - malate metabolic process, GO:0009408 - response to heat, GO:0006099 - tricarboxylic acid cycle, GO:0010038 - response to metal ion, GO:0006950 - response to stress, GO:0001666 - response to hypoxia, GO:0009739 - response to gibberellin stimulus, GO:0006107 - oxaloacetate metabolic process, GO:0006734 - NADH metabolic process, GO:0046554 - malate dehydrogenase (NADP+) activity, GO:0009507 - chloroplast, GO:0005783 - endoplasmic reticulum, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000259 - heat tolerance, TO:0000015 - oxygen sensitivity, TO:0000168 - abiotic stress trait, TO:0000303 - cold tolerance	PO:0020103 - flag leaf , PO:0009047 - stem , PO:0025034 - leaf , PO:0020104 - leaf sheath 
24865	WSS1	OsWSS1, TMK1, OsTMK1	WATER-SOAKED SPOT 1	WATER-SOAKED SPOT1, Transmembrane kinase 1	TRANSMEMBRANE KINASE 1	oswss1	11	GO:1900055: regulation of leaf senescence. GO:2000377: regulation of reactive oxygen species metabolic process. GO:2000024: regulation of leaf development. GO:1902510: regulation of apoptotic DNA fragmentation. TO:0006064: rolled leaf.	 Biochemical character,  Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Vegetative organ - Culm,  Vegetative organ - Leaf	Os11g0448000	LOC_Os11g26130.1				GO:0010941 - regulation of cell death, GO:0010109 - regulation of photosynthesis, GO:0010374 - stomatal complex development, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0016021 - integral to membrane, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence, GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0048366 - leaf development, GO:0006309 - DNA fragmentation involved in apoptosis	TO:0000370 - leaf width, TO:0000566 - stomatal frequency, TO:0000207 - plant height, TO:0000145 - internode length, TO:0000040 - panicle length, TO:0000496 - carotenoid content, TO:0000295 - chlorophyll-b content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000605 - hydrogen peroxide content, TO:0000655 - leaf development trait, TO:0000249 - leaf senescence, TO:0002715 - chloroplast development trait, TO:0000455 - seed set percent, TO:0000382 - 1000-seed weight, TO:0000136 - relative water content	PO:0001054 - 4 leaf senescence stage , PO:0025034 - leaf , PO:0001050 - leaf development stage 
24866	BRM	OsCHR707, CHR707, OsBRM, OsBrd11, Brd11	BRAHMA	chromatin remodeling factor 707, bromodomain-containing protein 11	CHROMATIN REMODELING FACTOR 707	osbrm	2	an SNF2 ATPase. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Seed - Morphological traits - Embryo	Os02g0114000	LOC_Os02g02290.1				GO:0008094 - DNA-dependent ATPase activity, GO:0003677 - DNA binding, GO:0045995 - regulation of embryonic development, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0040029 - regulation of gene expression, epigenetic, GO:0003682 - chromatin binding, GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress	TO:0000620 - embryo development trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease	PO:0009006 - shoot system , PO:0009005 - root , PO:0007631 - plant embryo stage , PO:0009066 - anther , PO:0009010 - seed , PO:0009049 - inflorescence 
24867	CHR714	OsCHR714	CHROMATIN REMODELING FACTOR 714	chromatin remodeling factor 714	CHROMATIN REMODELING FACTOR 714		4	GO:0140658: ATP-dependent chromatin remodeler activity. GO:0071494: cellular response to UV-C. 	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0566100	LOC_Os04g47830.1				GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0008094 - DNA-dependent ATPase activity, GO:0006974 - response to DNA damage stimulus, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
24868	CHR717	OsCHR717	CHROMATIN REMODELING FACTOR 717	chromatin remodeling factor 717	CHROMATIN REMODELING FACTOR 717		10	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0457700	LOC_Os10g31970.1				GO:0046872 - metal ion binding, GO:0009651 - response to salt stress, GO:0016887 - ATPase activity, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0009555 - pollen development, GO:0000781 - chromosome, telomeric region, GO:0005524 - ATP binding, GO:0009414 - response to water deprivation, GO:0043007 - maintenance of rDNA	TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
24869	SYD	OsCHR720, OsSYD, CHR720	SPLAYED	chromatin remodeling factor 720	CHROMATIN REMODELING FACTOR 720	ossyd	6	SNF2-like chromatin-remodeling ATPase. AY663851, D24562, AU057480.	 Tolerance and resistance - Disease resistance,  Biochemical character,  Seed - Morphological traits - Embryo,  Tolerance and resistance - Stress tolerance	Os06g0255200	LOC_Os06g14406.1				GO:0044030 - regulation of DNA methylation, GO:0045995 - regulation of embryonic development, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0009414 - response to water deprivation, GO:0008094 - DNA-dependent ATPase activity	TO:0000276 - drought tolerance, TO:0000620 - embryo development trait, TO:0000074 - blast disease	PO:0007631 - plant embryo stage 
24870	CHR724	OsCHR724, OsRING164, RING164	CHROMATIN REMODELING FACTOR 724	chromatin remodeling factor 724, RING-type E3 ubiquitin ligase 164	CHROMATIN REMODELING FACTOR 724		7	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0642400	LOC_Os07g44800.1				GO:0044260 - cellular macromolecule metabolic process, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0008094 - DNA-dependent ATPase activity, GO:0044238 - primary metabolic process, GO:0006281 - DNA repair	TO:0000074 - blast disease, TO:0006001 - salt tolerance	
24871	CHR726	OsCHR726	CHROMATIN REMODELING FACTOR 726	chromatin remodeling factor 726	CHROMATIN REMODELING FACTOR 726		7	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance	Os07g0598300	LOC_Os07g40730.3, LOC_Os07g40730.1, LOC_Os07g40730.2				GO:0009651 - response to salt stress, GO:0006281 - DNA repair, GO:0003676 - nucleic acid binding, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0043596 - nuclear replication fork, GO:0004520 - endodeoxyribonuclease activity, GO:0031297 - replication fork processing, GO:0004519 - endonuclease activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
24872	CHR727	OsCHR727	CHROMATIN REMODELING FACTOR 727	chromatin remodeling factor 727	CHROMATIN REMODELING FACTOR 727		5	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0150300	LOC_Os05g05780.1				GO:0009414 - response to water deprivation, GO:0003677 - DNA binding, GO:0031491 - nucleosome binding, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0005634 - nucleus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000074 - blast disease	
24873	CHR728	OsCHR728	CHROMATIN REMODELING FACTOR 728	chromatin remodeling factor 728	CHROMATIN REMODELING FACTOR 728		1	Q7G8Y3. GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance	Os01g0367900	LOC_Os01g27040.1				GO:0031491 - nucleosome binding, GO:0016787 - hydrolase activity, GO:0004386 - helicase activity, GO:0008094 - DNA-dependent ATPase activity, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0005524 - ATP binding	TO:0000276 - drought tolerance	
24874	CHR731	OsCHR731, OsRING361, RING361	CHROMATIN REMODELING FACTOR 731	chromatin remodeling factor 731, RING-type E3 ubiquitin ligase 361	CHROMATIN REMODELING FACTOR 731		7	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0511500	LOC_Os07g32730.1				GO:0009414 - response to water deprivation, GO:0044238 - primary metabolic process, GO:0046872 - metal ion binding, GO:0006281 - DNA repair, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0006289 - nucleotide-excision repair, GO:0044260 - cellular macromolecule metabolic process, GO:0008094 - DNA-dependent ATPase activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000074 - blast disease	
24875	CHR737	OsCHR737	CHROMATIN REMODELING FACTOR 737	chromatin remodeling factor 737	CHROMATIN REMODELING FACTOR 737		6	GO:0140658: ATP-dependent chromatin remodeler activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os06g0255700	LOC_Os06g14440.4, LOC_Os06g14440.1, LOC_Os06g14440.3				GO:0006281 - DNA repair, GO:0044238 - primary metabolic process, GO:0044260 - cellular macromolecule metabolic process, GO:0006289 - nucleotide-excision repair, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0008094 - DNA-dependent ATPase activity	TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance	
24876	CHR739	OsCHR739	CHROMATIN REMODELING FACTOR 739	chromatin remodeling factor 739	CHROMATIN REMODELING FACTOR 739		7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0680500	LOC_Os07g48270.1				GO:0016020 - membrane, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000074 - blast disease, TO:0006001 - salt tolerance	
24877	CHR743	OsCHR743	CHROMATIN REMODELING FACTOR 743	chromatin remodeling factor 743	CHROMATIN REMODELING FACTOR 743		8	GO:0140658: ATP-dependent chromatin remodeler activity. GO:0080188: gene silencing by RNA-directed DNA methylation.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0243866/Os08g0243833	LOC_Os08g14610.1				GO:0005524 - ATP binding, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000074 - blast disease	
24878	SKGAMMA	OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12	SHAGGY-LIKE KINASE GAMMA	shaggy-like kinase gamma, GSK3/SHAGGY-Like Kinase 11, GSK3-like Kinase 2, SHAGGY-LIKE KINASE12	SHAGGY-LIKE KINASE GAMMA		1	AB059621. a GSK3/SHAGGY-like kinase clade I member. OsSK12 in Lu et al. 2020.	 Tolerance and resistance - Stress tolerance	Os01g0252100	LOC_Os01g14860.3, LOC_Os01g14860.2, LOC_Os01g14860.1, LOC_Os01g14860.4				GO:0009933 - meristem structural organization, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0009409 - response to cold	TO:0000303 - cold tolerance	
24879	_		_	proteinase inhibitor			3	Q10J94.	 Biochemical character	Os03g0429000	LOC_Os03g31510.1				GO:0006952 - defense response, GO:0004869 - cysteine-type endopeptidase inhibitor activity, GO:0005576 - extracellular region		
24880	NACL35	OsNACL35	NAC35-LIKE GENE	OsNAC35-like	NAC35-LIKE PROTEIN		8	B8BA63 (indica). BGIOSGA027877. OsNAC35-like (OsNACL35) is from a salt-tolerant cultivar 'Sea Rice 86' (SR86). GO:1904828: positive regulation of hydrogen sulfide biosynthetic process.	 Tolerance and resistance - Stress tolerance						GO:0042542 - response to hydrogen peroxide, GO:0070814 - hydrogen sulfide biosynthetic process, GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009651 - response to salt stress	TO:0000605 - hydrogen peroxide content, TO:0000249 - leaf senescence, TO:0006001 - salt tolerance	PO:0001054 - 4 leaf senescence stage , PO:0009046 - flower , PO:0009006 - shoot system , PO:0009005 - root , PO:0025034 - leaf 
24881	DCD1	OsDCD1	D-CYSTEINE DESULFHYDRASE	D-cysteine desulfhydrase	D-CYSTEINE DESULFHYDRASE		8	Q6ZHE5.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0773300	LOC_Os02g53330.4, LOC_Os02g53330.3, LOC_Os02g53330.2, LOC_Os02g53330.1				GO:0008152 - metabolic process, GO:0070814 - hydrogen sulfide biosynthetic process, GO:0019148 - D-cysteine desulfhydrase activity, GO:0005739 - mitochondrion, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
24882	_	Hsp90, OsHsp90	_				12			Os12g0514500	LOC_Os12g32986.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0048471 - perinuclear region of cytoplasm, GO:0005783 - endoplasmic reticulum, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0006457 - protein folding, GO:0051082 - unfolded protein binding		
24883	_		_				11	a homolog of Arabidopsis VIP1 protein.	 Tolerance and resistance - Disease resistance	Os11g0160500	LOC_Os11g06170.1, LOC_Os11g06170.2				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0051607 - defense response to virus	TO:0000148 - viral disease resistance	
24884	GNP12	OsGNP12, RGH1A, OsRGH1A	GRAIN NUMBER PER PANICLE 12	Grain Number per Panicle 12, Resistance Gene Homolog 1A	RESISTANCE GENE HOMOLOG 1A			NB-ARC (nucleotide-binding adaptor shared by APAF-1, R proteins, and CED-4) gene family.	 Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os12g0553200	LOC_Os12g36720.1				GO:0005634 - nucleus, GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0051707 - response to other organism, GO:0010229 - inflorescence development	TO:0002660 - cytokinin content, TO:0000396 - grain yield, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000734 - grain length, TO:0000621 - inflorescence development trait, TO:0002759 - grain number	PO:0001083 - inflorescence development stage 
24885	RPK1	OsRPK1	LEUCINE-RICH-REPEAT TYPE RECEPTOR-LIKE PROTEIN KINASE 1	leucine-rich-repeat type receptor-like protein kinase 1	LEUCINE-RICH-REPEAT TYPE RECEPTOR-LIKE PROTEIN KINASE 1		9	GO:0035556: intracellular signal transduction.	 Tolerance and resistance - Stress tolerance	Os09g0552300	LOC_Os09g37949.1				GO:0005737 - cytoplasm, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0000245 - spliceosome assembly, GO:0050684 - regulation of mRNA processing, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	PO:0000258 - root cortex 
24886	NGAL1-2	OsNGAL1-2	NGATHA-LIKE 1-2	OsNGA-LIKE1-2, NGA-LIKE1-2	NGATHA-LIKE 1-2		12		 Other	Os12g0157000	LOC_Os12g06080.1				GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
24887	MLP423	OsMLP423	MAJOR LATEX PROTEIN 423	major latex protein 423	MAJOR LATEX PROTEIN 423		4	GO:0038023: signaling receptor activity. GO:1901002: positive regulation of response to salt stress. GO:1902584: positive regulation of response to water deprivation. PO:0030117: spike inflorescence.	 Tolerance and resistance - Stress tolerance	Os04g0465600	LOC_Os04g39150.1				GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0006952 - defense response, GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0010427 - abscisic acid binding, GO:0030104 - water homeostasis, GO:0006833 - water transport, GO:0006970 - response to osmotic stress, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf 
24888	FLA2	OsFLA2	FLAG LEAF ANGLE 2	Flag leaf angle 2		OsFLA2TT, OsFLA2CC	2		 Vegetative organ - Leaf,  Character as QTL - Yield and productivity	Os02g0142875						TO:0000124 - flag leaf angle, TO:0000455 - seed set percent	
24889	ZJ-ES	OsZJ-ES	ZHEJING-EARLY SENESCENCE	ZheJing-early senescence		zj-es	3	The ZJ-ES gene was mapped in a 458 kb-interval between the molecular markers RM5992 and RM5813 on Chromosome 3. TO:0006060: leaf chlorosis.	 Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Vegetative organ - Culm						GO:0010150 - leaf senescence, GO:0009658 - chloroplast organization, GO:0043067 - regulation of programmed cell death, GO:0009555 - pollen development	TO:0000207 - plant height, TO:0000249 - leaf senescence, TO:0000442 - plant fresh weight, TO:0000382 - 1000-seed weight, TO:0000447 - filled grain number, TO:0000152 - panicle number, TO:0000187 - anther color, TO:0002715 - chloroplast development trait, TO:0000420 - fertility related trait, TO:0000352 - plant dry weight	PO:0001054 - 4 leaf senescence stage 
24890	_		_	ABC transporter-like domain containing protein			2	Q8GU85. GO:0140359: ABC-type transporter activity.	 Biochemical character	Os02g0318450	LOC_Os02g21340.1				GO:0005524 - ATP binding, GO:0016021 - integral to membrane		
24891	_		_				5	a predicted target of osa-miR818d.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0104650	LOC_Os05g01440.1				GO:0006189 - 'de novo' IMP biosynthetic process, GO:0009409 - response to cold, GO:0005524 - ATP binding, GO:0046872 - metal ion binding, GO:0004642 - phosphoribosylformylglycinamidine synthase activity, GO:0006541 - glutamine metabolic process	TO:0000303 - cold tolerance	
24892	_		_				1	a predicted target of osa-miR818d. GO:1990429: peroxisomal importomer complex.	 Tolerance and resistance - Stress tolerance	Os01g0107000	LOC_Os01g01720.1, LOC_Os01g01720.2				GO:0005102 - receptor binding, GO:0009409 - response to cold, GO:0016560 - protein import into peroxisome matrix, docking, GO:0005778 - peroxisomal membrane	TO:0000303 - cold tolerance	
24893	SARD1	OsSARD1	SAR DEFICIENT 1				8			Os08g0360300	LOC_Os08g27170.1				GO:0005516 - calmodulin binding, GO:0005634 - nucleus, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
24894	MEL	OsMEL, OsRING460, RING460	MICROTUBULE-ASSOCIATED C4HC3-TYPE E3 LIGASE 	Microtubule-associated C4HC3-type E3 Ligase, RING-type E3 ubiquitin ligase 460	MICROTUBULE-ASSOCIATED C4HC3-TYPE E3 LIGASE 		6	CT836317. GO:0061630: ubiquitin protein ligase activity.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0554100	LOC_Os06g36030.1				GO:0050832 - defense response to fungus, GO:0051607 - defense response to virus, GO:0008270 - zinc ion binding, GO:0002764 - immune response-regulating signal transduction, GO:0044260 - cellular macromolecule metabolic process, GO:0031347 - regulation of defense response, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000148 - viral disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000112 - disease resistance	
24895	YAF9	OsYAF9	YEAST ALL1-FUSED GENE FROM CHROMOSOME 9				6	a subunit of SWR1 and NuA4 complexes. GO:0080186: developmental vegetative growth.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Embryo,  Vegetative organ - Culm	Os06g0137300	LOC_Os06g04580.1				GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0009686 - gibberellin biosynthetic process, GO:0009826 - unidimensional cell growth, GO:0016573 - histone acetylation, GO:0006338 - chromatin remodeling, GO:0042393 - histone binding, GO:0035267 - NuA4 histone acetyltransferase complex, GO:0009790 - embryonic development, GO:0010431 - seed maturation, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0080006 - internode patterning, GO:0009555 - pollen development, GO:0048608 - reproductive structure development	TO:0000346 - tiller number, TO:0000145 - internode length, TO:0002661 - seed maturation, TO:0000207 - plant height	
24896	SWC4 	OsSWC4	SWR1 COMPLEX SUBUNIT 4		SWR1 COMPLEX SUBUNIT 4		5	a subunit of SWR1 and NuA4 complexes. GO:0080186: developmental vegetative growth.	 Seed - Morphological traits - Embryo,  Vegetative organ - Culm,  Seed - Physiological traits - Storage substances	Os05g0540800	LOC_Os05g46330.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0000122 - negative regulation of transcription from RNA polymerase II promoter, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0043967 - histone H4 acetylation, GO:0043968 - histone H2A acetylation, GO:0006281 - DNA repair, GO:0003714 - transcription corepressor activity, GO:0003677 - DNA binding, GO:0000812 - Swr1 complex, GO:0009846 - pollen germination, GO:0035267 - NuA4 histone acetyltransferase complex, GO:0006338 - chromatin remodeling, GO:0080006 - internode patterning, GO:0048608 - reproductive structure development, GO:0009686 - gibberellin biosynthetic process, GO:0009826 - unidimensional cell growth	TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000145 - internode length	
24897	SWEET11B	OsSWEET11b	SWEET11B	sugar will eventually be exported transporter 11b	SUGAR WILL EVENTUALLY BE EXPORTED TRANSPORTER 11B	ossweet11b, ossweet11b-1, ossweet11b-2, ossweet11b-3	9	CT836541. GO:1904982: sucrose transmembrane transport. TO:1000022: anther morphology trait.	 Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os09g0508250	LOC_Os09g32992.1				GO:0042742 - defense response to bacterium, GO:0015770 - sucrose transport, GO:0008515 - sucrose transmembrane transporter activity, GO:0009555 - pollen development, GO:0009617 - response to bacterium, GO:0008643 - carbohydrate transport, GO:0051119 - sugar transmembrane transporter activity, GO:0016021 - integral to membrane, GO:0005886 - plasma membrane	TO:0000437 - male sterility, TO:0000696 - starch content, TO:0000175 - bacterial blight disease resistance	PO:0020124 - root stele , PO:0009080 - spikelet rachilla , PO:0020138 - leaf lamina vein , PO:0008013 - anther vascular system , PO:0009082 - spikelet floret , PO:0020121 - lateral root 
24898	ARE2	OsARE2	ABC1 REPRESSOR 2	ABC1 REPRESSOR2	ABC1 REPRESSOR 2	are2	3	Q9AYT5. a chloroplast-localized RelA/SpoT homolog protein.	 Tolerance and resistance - Stress tolerance	Os03g0340900	LOC_Os03g22160.1				GO:0016310 - phosphorylation, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0009507 - chloroplast, GO:0005524 - ATP binding, GO:0005525 - GTP binding, GO:0008728 - GTP diphosphokinase activity, GO:0008893 - guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity, GO:0016301 - kinase activity, GO:0015969 - guanosine tetraphosphate metabolic process, GO:0010150 - leaf senescence, GO:0015979 - photosynthesis	TO:0002673 - amino acid content, TO:0000011 - nitrogen sensitivity	
24899	DUF1639.1	OsDUF1639.1	DUF1639 FAMILY PROTEIN 1	DUF1639 family protein 1	DUF1639 FAMILY PROTEIN 1		3		 Tolerance and resistance - Stress tolerance,  Character as QTL - Germination	Os03g0807200	LOC_Os03g59250.1				GO:0009845 - seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0006979 - response to oxidative stress, GO:0009414 - response to water deprivation	TO:0000615 - abscisic acid sensitivity, TO:0002657 - oxidative stress, TO:0000276 - drought tolerance	PO:0007057 - 0 seed germination stage 
24900	CPPR1	OsCPPR1	CYTOPLASM-LOCALIZED PPR1 		CYTOPLASM-LOCALIZED PPR1 	cppr1-1, cppr1-2, cppr1-3, cppr1-4, cppr1-5	2	A cytosolic pentatricopeptide repeat protein.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0110400	LOC_Os02g02020.1				GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0003729 - mRNA binding, GO:0048658 - tapetal layer development, GO:0009658 - chloroplast organization, GO:0009555 - pollen development, GO:0043067 - regulation of programmed cell death	TO:0002715 - chloroplast development trait, TO:0000421 - pollen fertility	PO:0001007 - pollen development stage 
24901	ASHL1	OsASHL1	ABSENT, SMALL OR HOMEOTIC 2-LIKE PROTEIN 1	"\"absent, small or homeotic 2-like protein 1\""	ABSENT, SMALL OR HOMEOTIC 2-LIKE PROTEIN 1	osashl1	12	a homologs of Arabidopsis ASH2R. a COMPASS (complex proteins associated with Set1)-like complex component. GO:0000976: transcription cis-regulatory region binding.	 Vegetative organ - Culm,  Reproductive organ - Heading date	Os12g0143200	LOC_Os12g04930.1				GO:0051568 - histone H3-K4 methylation, GO:0009740 - gibberellic acid mediated signaling, GO:0010228 - vegetative to reproductive phase transition, GO:0009685 - gibberellin metabolic process, GO:0016131 - brassinosteroid metabolic process, GO:0048188 - Set1C/COMPASS complex, GO:0048573 - photoperiodism, flowering, GO:0009742 - brassinosteroid mediated signaling	TO:0002616 - flowering time, TO:0002675 - gibberellic acid content, TO:0002676 - brassinosteroid content, TO:0000357 - growth and development trait, TO:0000207 - plant height	
24902	ASHL2	OsASHL2	ABSENT, SMALL OR HOMEOTIC 2-LIKE PROTEIN 2	"\"absent, small or homeotic 2-like protein 2\""	ABSENT, SMALL OR HOMEOTIC 2-LIKE PROTEIN 2	osashl2	11	a homologs of Arabidopsis ASH2R. a COMPASS (complex proteins associated with Set1)-like complex component. GO:0000976: transcription cis-regulatory region binding.	 Reproductive organ - Heading date,  Vegetative organ - Culm	Os11g0146500	LOC_Os11g04930.1				GO:0048188 - Set1C/COMPASS complex, GO:0048573 - photoperiodism, flowering, GO:0010228 - vegetative to reproductive phase transition, GO:0009740 - gibberellic acid mediated signaling, GO:0009742 - brassinosteroid mediated signaling, GO:0009685 - gibberellin metabolic process, GO:0016131 - brassinosteroid metabolic process, GO:0051568 - histone H3-K4 methylation	TO:0000207 - plant height, TO:0002676 - brassinosteroid content, TO:0002616 - flowering time, TO:0000357 - growth and development trait, TO:0002675 - gibberellic acid content	
24903	ASHL3	OsASHL3	ABSENT, SMALL OR HOMEOTIC 2-LIKE PROTEIN 3	"\"absent, small or homeotic 2-like protein 3\""	ABSENT, SMALL OR HOMEOTIC 2-LIKE PROTEIN 3		11	a homologs of Arabidopsis ASH2R. a COMPASS (complex proteins associated with Set1)-like complex component. GO:0000976: transcription cis-regulatory region binding.		Os11g0145700	LOC_Os11g04890.1				GO:0051568 - histone H3-K4 methylation, GO:0048188 - Set1C/COMPASS complex		
24904	SLA1	OsSLA1	SMALL LEAF ANGLE 1	small leaf angle 1, leucine-rich repeat receptor-like kinase OsSLA1		sla1, sla1-1, sla1-8, sla1-11	4	GO:1900459: positive regulation of brassinosteroid mediated signaling pathway. PO:0020039: leaf lamina.	 Vegetative organ - Leaf,  Seed - Morphological traits - Grain shape	Os04g0487200	LOC_Os04g41030.1				GO:0009742 - brassinosteroid mediated signaling, GO:0009741 - response to brassinosteroid stimulus, GO:0016021 - integral to membrane, GO:0005524 - ATP binding, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane	TO:0000206 - leaf angle, TO:0002677 - brassinosteroid sensitivity, TO:0000397 - grain size	
24905	PTB1	OsPTB1	POLYPYRIMIDINE TRACT-BINDING PROTEIN 1	polypyrimidine tract-binding protein 1	POLYPYRIMIDINE TRACT-BINDING PROTEIN 1	osptb1	1	PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle	Os01g0867800	LOC_Os01g64770.3, LOC_Os01g64770.1, LOC_Os01g64770.2, LOC_Os01g64770.5				GO:0043484 - regulation of RNA splicing, GO:0017148 - negative regulation of translation, GO:0010229 - inflorescence development, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0003729 - mRNA binding	TO:0000621 - inflorescence development trait, TO:0000396 - grain yield, TO:0000557 - secondary branch number, TO:0000447 - filled grain number	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
24906	LA1	OsLa1	LA PROTEIN 1	La protein 1	LA PROTEIN 1	osla1-1, osla1-2	4	homologous to AtLa1. GO:1990904: ribonucleoprotein complex.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Seed - Morphological traits - Grain shape	Os04g0497600	LOC_Os04g42010.1				GO:0001558 - regulation of cell growth, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0006396 - RNA processing, GO:0008033 - tRNA processing, GO:0048653 - anther development, GO:0048316 - seed development	TO:0000357 - growth and development trait, TO:0000397 - grain size, TO:0000653 - seed development trait, TO:0000734 - grain length, TO:0000421 - pollen fertility	PO:0001004 - anther development stage , PO:0001170 - seed development stage 
24907	LA2	OsLa2	LA PROTEIN 2	La protein 2	LA PROTEIN 2	osla2-1, osla2-2	2	homologous to AtLa1. GO:1990904: ribonucleoprotein complex.	 Seed - Morphological traits - Grain shape,  Reproductive organ - Pollination, fertilization, fertility	Os02g0610400	LOC_Os02g39700.1				GO:0048316 - seed development, GO:0003729 - mRNA binding, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0006396 - RNA processing, GO:0008033 - tRNA processing, GO:0048653 - anther development	TO:0000421 - pollen fertility, TO:0000357 - growth and development trait, TO:0000653 - seed development trait, TO:0000399 - grain thickness, TO:0000455 - seed set percent, TO:0000397 - grain size	PO:0001170 - seed development stage , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0001004 - anther development stage 
24908	AP2M	OsAP2M	ADAPTOR PROTEIN 2 COMPLEX MU SUBUNIT	adaptor protein 2 complex mu subunit	ADAPTOR PROTEIN 2 COMPLEX MU SUBUNIT		2		 Vegetative organ - Culm	Os02g0690700	LOC_Os02g46510.1				GO:0005905 - coated pit, GO:0016192 - vesicle-mediated transport, GO:0006886 - intracellular protein transport, GO:0006897 - endocytosis, GO:0031410 - cytoplasmic vesicle, GO:0030131 - clathrin adaptor complex	TO:0000207 - plant height	
24909	LHCA5	OsLhca5	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN A5	light-harvesting chlorophyll a/b-binding protein a5	LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN A5		2	AtLhca5 ortholog. 	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0764500	LOC_Os02g52650.1				GO:0009768 - photosynthesis, light harvesting in photosystem I, GO:0009409 - response to cold, GO:0042803 - protein homodimerization activity, GO:0031409 - pigment binding, GO:0009782 - photosystem I antenna complex, GO:0009765 - photosynthesis, light harvesting, GO:0016168 - chlorophyll binding, GO:0009523 - photosystem II, GO:0009522 - photosystem I, GO:0009535 - chloroplast thylakoid membrane, GO:0050832 - defense response to fungus, GO:0009645 - response to low light intensity stimulus, GO:0009416 - response to light stimulus, GO:0009644 - response to high light intensity	TO:0000074 - blast disease	
24910	PSB33	OsPsb33	PHOTOSYSTEM II PROTEIN 33	photosystem II protein 33	PHOTOSYSTEM II PROTEIN 33		11	AtPsb33 ortholog.	 Tolerance and resistance - Disease resistance	Os11g0242400	LOC_Os11g13850.1, LOC_Os11g13850.2, LOC_Os11g13850.3				GO:0010207 - photosystem II assembly, GO:0050832 - defense response to fungus, GO:0009535 - chloroplast thylakoid membrane, GO:0051537 - 2 iron, 2 sulfur cluster binding, GO:0046872 - metal ion binding, GO:0042549 - photosystem II stabilization, GO:0008942 - nitrite reductase [NAD(P)H] activity	TO:0000074 - blast disease	
24911	OHP1	OsOHP1	ONE-HELIX PROTEIN 1	one-helix protein 1	ONE-HELIX PROTEIN 1		5	one of AtOHP1 orthologs.	 Tolerance and resistance - Disease resistance	Os05g0292800	LOC_Os05g22730.1				GO:0009535 - chloroplast thylakoid membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
24912	HYPK	OsHYPK	HUNTINGTIN YEAST PARTNER K	Huntingtin Yeast partner K	HUNTINGTIN YEAST PARTNER K	oshypk, oshypk-1, oshypk-2	3	PO:0030123: panicle inflorescence.	 Seed - Morphological traits,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Reproductive organ - panicle,  Vegetative organ - Culm	Os03g0832300	LOC_Os03g61680.1				GO:0005634 - nucleus, GO:0006474 - N-terminal protein amino acid acetylation, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0043066 - negative regulation of apoptosis, GO:0050821 - protein stabilization	TO:0000357 - growth and development trait, TO:0006032 - panicle size, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009005 - root , PO:0025480 - shoot-borne root primordium , PO:0025477 - floral organ primordium , PO:0004709 - axillary bud , PO:0008039 - stem base , PO:0000058 - vegetative bud , PO:0009049 - inflorescence , PO:0020104 - leaf sheath 
24913	NAA10	OsNAA10	N-TERMINAL ACETYLTRANSFERASE A CATALYTIC SUBUNIT 10	N-terminal acetyltransferase A catalytic subunit 10, NatA complex component 10, NatA catalytic subunit 10	N-TERMINAL ACETYLTRANSFERASE A CATALYTIC SUBUNIT 10		1	PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0617500	LOC_Os01g43030.2, LOC_Os01g43030.1				GO:0009651 - response to salt stress, GO:0043229 - intracellular organelle, GO:0016740 - transferase activity, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
24914	NAA15	OsNAA15, HHC4, OsHHC4	N-TERMINAL ACETYLTRANSFERASE A AUXILIARY SUBUNIT 15	N-terminal acetyltransferase A auxiliary subunit 15, NatA complex component 15, NatA auxiliary subunit 15, homolog of OsglHAT1 on chromosome 4	N-TERMINAL ACETYLTRANSFERASE A AUXILIARY SUBUNIT 15		4	GO:1990190: peptide-glutamate-alpha-N-acetyltransferase activity. GO:1990189: peptide-serine-alpha-N-acetyltransferase activity.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0635800	LOC_Os04g54330.3, LOC_Os04g54330.1, LOC_Os04g54330.2				GO:0005829 - cytosol, GO:0009651 - response to salt stress, GO:0004596 - peptide alpha-N-acetyltransferase activity, GO:0006474 - N-terminal protein amino acid acetylation, GO:0009793 - embryonic development ending in seed dormancy, GO:0003729 - mRNA binding, GO:0031415 - NatA complex, GO:0009414 - response to water deprivation	TO:0000397 - grain size, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000396 - grain yield	
24915	DHHC30	OsDHHC30	DHHC DOMAIN PROTEIN 30	DHHC domain protein 30	DHHC DOMAIN PROTEIN 30	osdhhc30	12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0480000	LOC_Os12g29560.1				GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0006612 - protein targeting to membrane, GO:0016417 - S-acyltransferase activity, GO:0043543 - protein amino acid acylation, GO:0009651 - response to salt stress, GO:0006979 - response to oxidative stress	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
24916	DHHC18	OsDHHC18	DHHC DOMAIN PROTEIN 18	DHHC domain protein 18	DHHC DOMAIN PROTEIN 18		7		 Biochemical character	Os07g0467800	LOC_Os07g28460.1, LOC_Os07g28460.2				GO:0016417 - S-acyltransferase activity, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0006612 - protein targeting to membrane, GO:0043543 - protein amino acid acylation		
24917	DHHC13	OsDHHC13	DHHC DOMAIN PROTEIN 13	DHHC domain protein 13	DHHC DOMAIN PROTEIN 13		4		 Biochemical character	Os04g0674450	LOC_Os04g57819.2, LOC_Os04g57819.1				GO:0016021 - integral to membrane, GO:0043543 - protein amino acid acylation, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0006612 - protein targeting to membrane, GO:0016417 - S-acyltransferase activity, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum		
24918	DHHC14	OsDHHC14	DHHC DOMAIN PROTEIN 14	DHHC domain protein 14	DHHC DOMAIN PROTEIN 14		5		 Biochemical character	Os05g0436900	LOC_Os05g36090.1				GO:0016417 - S-acyltransferase activity, GO:0006612 - protein targeting to membrane, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0043543 - protein amino acid acylation		
24919	DHHC2	OsDHHC2, OsDHHC02, DHHC02	DHHC DOMAIN PROTEIN 2	DHHC domain protein 2	DHHC DOMAIN PROTEIN 2		1		 Biochemical character	Os01g0844400	LOC_Os01g62620.1, LOC_Os01g62620.2				GO:0006612 - protein targeting to membrane, GO:0016409 - palmitoyltransferase activity, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine		
24920	DHHC3	OsDHHC3, OsDHHC03, DHHC03	DHHC DOMAIN PROTEIN 3	DHHC domain protein 3	DHHC DOMAIN PROTEIN 3		1		 Biochemical character	Os01g0868200	LOC_Os01g64810.1, LOC_Os01g64810.2				GO:0016021 - integral to membrane, GO:0006612 - protein targeting to membrane, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity		
24921	DHHC7	OsDHHC7, OsDHHC07, DHHC07	DHHC DOMAIN PROTEIN 7	DHHC domain protein 7	DHHC DOMAIN PROTEIN 7		3		 Biochemical character	Os03g0209500	LOC_Os03g11110.1				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0006612 - protein targeting to membrane, GO:0016409 - palmitoyltransferase activity		
24922	DHHC8	OsDHHC8, OsDHHC08, DHHC08	DHHC DOMAIN PROTEIN 8	DHHC domain protein 8	DHHC DOMAIN PROTEIN 8		3		 Biochemical character	Os03g0275400	LOC_Os03g16790.3, LOC_Os03g16790.2, LOC_Os03g16790.1				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane, GO:0006612 - protein targeting to membrane		
24923	DHHC9	OsDHHC9, OsDHHC09, DHHC09	DHHC DOMAIN PROTEIN 9	DHHC domain protein 9	DHHC DOMAIN PROTEIN 9		3		 Biochemical character	Os03g0363900	LOC_Os03g24900.1, LOC_Os03g24900.2				GO:0006612 - protein targeting to membrane, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine		
24924	DHHC10	OsDHHC10	DHHC DOMAIN PROTEIN 10	DHHC domain protein 10	DHHC DOMAIN PROTEIN 10		3		 Biochemical character	Os03g0804300	LOC_Os03g58960.1				GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0006612 - protein targeting to membrane, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane		
24925	DHHC11	OsDHHC11	DHHC DOMAIN PROTEIN 11	DHHC domain protein 11	DHHC DOMAIN PROTEIN 11		4		 Biochemical character	Os04g0562000	LOC_Os04g47410.3, LOC_Os04g47410.4, LOC_Os04g47410.1, LOC_Os04g47410.5				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0016021 - integral to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0006612 - protein targeting to membrane		
24926	DHHC12	OsDHHC12	DHHC DOMAIN PROTEIN 12	DHHC domain protein 12	DHHC DOMAIN PROTEIN 12		4		 Biochemical character	Os04g0585100	LOC_Os04g49560.1				GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005886 - plasma membrane, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum		
24927	DHHC15	OsDHHC15	DHHC DOMAIN PROTEIN 15	DHHC domain protein 15	DHHC DOMAIN PROTEIN 15		5		 Biochemical character	Os05g0458000	LOC_Os05g38360.2, LOC_Os05g38360.1, LOC_Os05g38360.3				GO:0005783 - endoplasmic reticulum, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0006612 - protein targeting to membrane		
24928	DHHC16	OsDHHC16	DHHC DOMAIN PROTEIN 16	DHHC domain protein 16	DHHC DOMAIN PROTEIN 16		6		 Biochemical character	Os06g0308900	LOC_Os06g20400.5, LOC_Os06g20400.1, LOC_Os06g20400.2, LOC_Os06g20400.3, LOC_Os06g20400.4				GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane		
24929	DHHC17	OsDHHC17	DHHC DOMAIN PROTEIN 17	DHHC domain protein 17	DHHC DOMAIN PROTEIN 17		6		 Biochemical character	Os06g0644500	LOC_Os06g43680.1				GO:0016021 - integral to membrane, GO:0016409 - palmitoyltransferase activity, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity		
24930	DHHC19	OsDHHC19	DHHC DOMAIN PROTEIN 19	DHHC domain protein 19	DHHC DOMAIN PROTEIN 19		8		 Biochemical character	Os08g0535400	LOC_Os08g42370.3, LOC_Os08g42370.2, LOC_Os08g42370.1				GO:0006612 - protein targeting to membrane, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine		
24931	DHHC20	OsDHHC20	DHHC DOMAIN PROTEIN 20	DHHC domain protein 20	DHHC DOMAIN PROTEIN 20		8		 Biochemical character	Os08g0539100	LOC_Os08g42620.2, LOC_Os08g42620.1				GO:0016021 - integral to membrane, GO:0006612 - protein targeting to membrane, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity		
24932	DHHC21	OsDHHC21	DHHC DOMAIN PROTEIN 21	DHHC domain protein 21	DHHC DOMAIN PROTEIN 21		8		 Biochemical character	Os08g0556400	LOC_Os08g44230.1				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0006612 - protein targeting to membrane		
24933	DHHC22	OsDHHC22	DHHC DOMAIN PROTEIN 22	DHHC domain protein 22	DHHC DOMAIN PROTEIN 22		9		 Biochemical character	Os09g0508300	LOC_Os09g33450.1, LOC_Os09g33450.2				GO:0005794 - Golgi apparatus, GO:0006612 - protein targeting to membrane, GO:0016409 - palmitoyltransferase activity, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine		
24934	DHHC23	OsDHHC23	DHHC DOMAIN PROTEIN 23	DHHC domain protein 23	DHHC DOMAIN PROTEIN 23		9		 Biochemical character	Os09g0563250	LOC_Os09g38970.1				GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0006612 - protein targeting to membrane, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0016021 - integral to membrane		
24935	DHHC25	OsDHHC25	DHHC DOMAIN PROTEIN 25	DHHC domain protein 25	DHHC DOMAIN PROTEIN 25		11		 Biochemical character	Os11g0133800	LOC_Os11g03910.1				GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0006612 - protein targeting to membrane		
24936	DHHC28	OsDHHC28	DHHC DOMAIN PROTEIN 28	DHHC domain protein 28	DHHC DOMAIN PROTEIN 28		12		 Biochemical character	Os12g0131200	LOC_Os12g03730.1				GO:0005783 - endoplasmic reticulum, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0006612 - protein targeting to membrane		
24937	DHHC29	OsDHHC29	DHHC DOMAIN PROTEIN 29	DHHC domain protein 29	DHHC DOMAIN PROTEIN 29		12		 Biochemical character	Os12g0263100	LOC_Os12g16210.1				GO:0005783 - endoplasmic reticulum, GO:0005794 - Golgi apparatus, GO:0018230 - peptidyl-S-palmitoyl-L-cysteine biosynthetic process from peptidyl-cysteine, GO:0006612 - protein targeting to membrane, GO:0016409 - palmitoyltransferase activity, GO:0019706 - protein-cysteine S-palmitoleyltransferase activity, GO:0016021 - integral to membrane		
24938	DFOT1	OsDFOT1	DIURNAL FLOWER OPENING TIME 1	Diurnal Flower Opening Time 1			1		 Reproductive organ - Heading date	Os01g0611000	LOC_Os01g42520.1				GO:0006833 - water transport, GO:0048573 - photoperiodism, flowering, GO:0007623 - circadian rhythm, GO:0052546 - cell wall pectin metabolic process	TO:0002616 - flowering time	PO:0001079 - fully expanded lodicule stage , PO:0009036 - lodicule 
24939	RSH3B	OsRSH3b	RELA/SPOT HOMOLOG 3B	RelA/SpoT Homolog 3b	RELA/SPOT HOMOLOG 3B		7	TO:0006060: leaf chlorosis.	 Vegetative organ - Leaf	Os07g0613000	LOC_Os07g42160.1				GO:0015970 - guanosine tetraphosphate biosynthetic process, GO:0010109 - regulation of photosynthesis, GO:0010468 - regulation of gene expression, GO:0009658 - chloroplast organization, GO:0046039 - GTP metabolic process, GO:0048366 - leaf development	TO:0002715 - chloroplast development trait, TO:0000655 - leaf development trait, TO:0000326 - leaf color, TO:0001015 - photosynthetic rate	PO:0001050 - leaf development stage 
24940	RSH3C	OsRSH3c	RELA/SPOT HOMOLOG 3C	RelA/SpoT Homolog 3c	RELA/SPOT HOMOLOG 3C		2		 Vegetative organ - Leaf	Os02g0699400	LOC_Os02g47120.1				GO:0015970 - guanosine tetraphosphate biosynthetic process, GO:0015969 - guanosine tetraphosphate metabolic process, GO:0010109 - regulation of photosynthesis, GO:0010468 - regulation of gene expression, GO:0009658 - chloroplast organization, GO:0046039 - GTP metabolic process, GO:0048366 - leaf development	TO:0002715 - chloroplast development trait, TO:0001015 - photosynthetic rate, TO:0000655 - leaf development trait	PO:0001050 - leaf development stage 
24941	PACP	OsPACP	PRC2-ASSOCIATED COILED-COIL PROTEIN	PRC2-associated coiled-coil protein	PRC2-ASSOCIATED COILED-COIL PROTEIN		3	GO:1902183: regulation of shoot apical meristem development. GO:0061085: regulation of histone H3-K27 methylation.		Os03g0108700	LOC_Os03g01840.1				GO:0070734 - histone H3-K27 methylation, GO:0048507 - meristem development	TO:0006020 - shoot apical meristem development	PO:0000037 - shoot apex , PO:0020148 - shoot apical meristem 
24942	MYB36A	OsMYB36a, Os2R_MYB75, 2R_MYB75	MYB TRANSCRIPTION FACTOR 36A	MYELOBLASTOSIS transcription factor 36a, MYB transcription factor 36a, R2R3-MYB Transcription Factor 75	MYB TRANSCRIPTION FACTOR 36A		8	GO:2000652: regulation of secondary cell wall biogenesis. TO:0020096: mineral and ion transport trait. TO:1000055: shoot system calcium content. TO:1000064: shoot system manganese content. TO:1000060: shoot system iron content. TO:1000073: shoot system zinc content. TO:1000059: shoot system copper content. TO:1000056: shoot system cadmium content.	 Vegetative organ - Root	Os08g0248700	LOC_Os08g15020.1				GO:0003677 - DNA binding, GO:0009834 - secondary cell wall biogenesis		PO:0000025 - root tip 
24943	MYB36B	OsMYB36b, Os2R_MYB32, 2R_MYB32	MYB TRANSCRIPTION FACTOR 36B	MYELOBLASTOSIS transcription factor 36b, MYB transcription factor 36b, R2R3-MYB Transcription Factor 32	MYB TRANSCRIPTION FACTOR 36B		2	GO:2000652: regulation of secondary cell wall biogenesis. TO:0020096: mineral and ion transport trait. TO:1000055: shoot system calcium content. TO:1000064: shoot system manganese content. TO:1000060: shoot system iron content. TO:1000073: shoot system zinc content. TO:1000059: shoot system copper content. TO:1000056: shoot system cadmium content.	 Vegetative organ - Root	Os02g0786400	LOC_Os02g54520.1				GO:0009834 - secondary cell wall biogenesis, GO:0005615 - extracellular space, GO:0003677 - DNA binding		PO:0000025 - root tip 
24944	MYB36C	OsMYB36c, Os2R_MYB42, 2R_MYB42	MYB TRANSCRIPTION FACTOR 36C	MYELOBLASTOSIS transcription factor 36c, MYB transcription factor 36c, R2R3-MYB Transcription Factor 42	MYB TRANSCRIPTION FACTOR 36C		3	GO:2000652: regulation of secondary cell wall biogenesis. TO:0020096: mineral and ion transport trait. TO:1000055: shoot system calcium content. TO:1000064: shoot system manganese content. TO:1000060: shoot system iron content. TO:1000073: shoot system zinc content. TO:1000059: shoot system copper content. TO:1000056: shoot system cadmium content.	 Vegetative organ - Root	Os03g0771100	LOC_Os03g56090.1				GO:0003677 - DNA binding, GO:0009834 - secondary cell wall biogenesis		PO:0000025 - root tip 
24945	RINGZF1	OsRINGzf1, OsRING34, RING34	RING ZINC FINGER PROTEIN 1	RING zinc finger protein 1, Really Interesting New Gene zinc finger protein 1, RING-type E3 ubiquitin ligase 34	RING ZINC FINGER PROTEIN 1		4	GO:1902584: positive regulation of response to water deprivation. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Root	Os04g0568900	LOC_Os04g48050.1				GO:0044260 - cellular macromolecule metabolic process, GO:0016021 - integral to membrane, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0030104 - water homeostasis, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0047484 - regulation of response to osmotic stress, GO:0016567 - protein ubiquitination, GO:0045732 - positive regulation of protein catabolic process, GO:0044238 - primary metabolic process	TO:0000136 - relative water content, TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000085 - leaf rolling, TO:0000227 - root length, TO:0000233 - root volume, TO:0000078 - root dry weight	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem 
24946	DITL1	WSD1, OsWSD1, OsDITL1	DROUGHT-INSENSITIVE TILLING LINE 1	drought-insensitive TILLING line 1			5	a putative ortholog of WSD1 (wax ester synthase/diacylglycerol O-acyltransferase in Arabidopsis).	 Tolerance and resistance - Stress tolerance	Os05g0556300	LOC_Os05g48260.1				GO:0009414 - response to water deprivation, GO:0010166 - wax metabolic process	TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance, TO:0000085 - leaf rolling	
24947	_	OsROP, ROP	_	RHO-RELATED PROTEIN FROM PLANTS		osrop	4	a plant Rho GTPase. GO:2000280: regulation of root development.	 Vegetative organ - Root	Os04g0561200	LOC_Os04g47330.1				GO:0048830 - adventitious root development	TO:0002685 - crown root number	
24948	TH1	OsTH1, CLES, OsCLES	THIAMIN REQUIRING1	chlorotic lethal seedling, THIAMIN REQUIRING 1, HMP-P kinase/thiamin monophosphate synthase	HMP-P KINASE/THIAMIN MONOPHOSPHATE SYNTHASE	cles	12	Q2QWK9. PO:0030123: panicle inflorescence. GO:0090351: seedling development. TO:0000949: seedling growth and development trait.	 Coloration,  Biochemical character	Os12g0192500	LOC_Os12g09000.1, LOC_Os12g09000.2				GO:0019217 - regulation of fatty acid metabolic process, GO:0005829 - cytosol, GO:0009229 - thiamin diphosphate biosynthetic process, GO:0009228 - thiamin biosynthetic process, GO:0016310 - phosphorylation, GO:0004789 - thiamin-phosphate diphosphorylase activity, GO:0009507 - chloroplast, GO:0008902 - hydroxymethylpyrimidine kinase activity, GO:0046872 - metal ion binding, GO:0006098 - pentose-phosphate shunt, GO:0006099 - tricarboxylic acid cycle, GO:0008972 - phosphomethylpyrimidine kinase activity, GO:0009658 - chloroplast organization, GO:0006109 - regulation of carbohydrate metabolic process, GO:0005524 - ATP binding	TO:0000328 - sucrose content, TO:0000494 - pigment content, TO:0000300 - glucose content, TO:0000604 - fat and essential oil content, TO:0002715 - chloroplast development trait	PO:0009049 - inflorescence , PO:0025034 - leaf 
24949	RIFLA	OsRIFLA	RICE FLOWERING ASSOCIATED				10	Intronic long noncoding RNA from the first intron of OsMADS56 (LOC_Os10g39130). GO:2000028: egulation of photoperiodism, flowering.	 Reproductive organ - Heading date	Os10g0536150					GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0002616 - flowering time	
24950	CPL3	OsCPL3	C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3		C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3	cpl3, cpl3-1, cpl3-2	11	a member of the RNA Pol II CTD phosphatase-like family. GO:0070940: dephosphorylation of RNA polymerase II C-terminal domain. GO:1900369: negative regulation of post-transcriptional gene silencing by RNA.	 Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance	Os11g0521900	LOC_Os11g31890.1				GO:0017018 - myosin phosphatase activity, GO:0008420 - CTD phosphatase activity, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009741 - response to brassinosteroid stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0008022 - protein C-terminus binding	TO:0000455 - seed set percent, TO:0000397 - grain size, TO:0000206 - leaf angle, TO:0000382 - 1000-seed weight, TO:0000019 - seedling height, TO:0002677 - brassinosteroid sensitivity, TO:0002758 - flag leaf lamina width, TO:0000207 - plant height, TO:0002757 - flag leaf length, TO:0002688 - leaf lamina joint bending	PO:0025034 - leaf , PO:0009005 - root 
24951	DHT1	OsDHT1	DWARF AND HIGH TILLERING 1	Dwarf and High Tillering1		dht1	4	a monocotyledon-specific hnRNP-like protein. GO:1902347: response to strigolactone.	 Vegetative organ - Culm	Os04g0636900	LOC_Os04g54440.3, LOC_Os04g54440.2, LOC_Os04g54440.1				GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0003730 - mRNA 3'-UTR binding, GO:0000398 - nuclear mRNA splicing, via spliceosome	TO:0000329 - tillering ability, TO:0000346 - tiller number, TO:0000207 - plant height	
24952	MPR25	OsMPR25	MITOCHONDRIAL PPR25	MITOCHONDRIAL PPR 25, mitochondrial pentatricopeptide repeat protein 25	MITOCHONDRIAL PPR25	mpr25	4	GO:1900865: chloroplast RNA modification. GO:0080156: mitochondrial mRNA modification.	 Character as QTL - Plant growth activity,  Coloration - Chlorophyll	Os04g0602600	LOC_Os04g51350.1				GO:0005739 - mitochondrion, GO:0043231 - intracellular membrane-bounded organelle, GO:0003729 - mRNA binding, GO:0003723 - RNA binding, GO:0009507 - chloroplast, GO:0009451 - RNA modification, GO:0016554 - cytidine to uridine editing	TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0001015 - photosynthetic rate, TO:0000357 - growth and development trait, TO:0000019 - seedling height	PO:0025034 - leaf 
24953	NDB1	OsNDB1	NADH DEHYDROGENASE B1	NADH dehydrogenase B1	NADH DEHYDROGENASE B1		6	an internal NADH dehydrogenase.	 Biochemical character	Os06g0684000	LOC_Os06g47000.2, LOC_Os06g47000.3, LOC_Os06g47000.1				GO:0006116 - NADH oxidation, GO:0005777 - peroxisome, GO:0005743 - mitochondrial inner membrane, GO:0005509 - calcium ion binding, GO:0005739 - mitochondrion, GO:0003954 - NADH dehydrogenase activity		
24954	NDC1	OsNDC1	NADH DEHYDROGENASE C1	NADH dehydrogenase C1	NADH DEHYDROGENASE C1		6	an external NADH dehydrogenase.	 Biochemical character	Os06g0214900	LOC_Os06g11140.1				GO:0016491 - oxidoreductase activity, GO:0042372 - phylloquinone biosynthetic process, GO:0003955 - NAD(P)H dehydrogenase (quinone) activity, GO:0019646 - aerobic electron transport chain		
24955	NDA1	OsNDA1	NADH DEHYDROGENASE A1	NADH dehydrogenase A1	NADH DEHYDROGENASE A1		1	an external NADH dehydrogenase.	 Biochemical character	Os01g0830100	LOC_Os01g61410.1, LOC_Os01g61410.3, LOC_Os01g61410.4				GO:0005777 - peroxisome, GO:0005739 - mitochondrion, GO:0006116 - NADH oxidation, GO:0003954 - NADH dehydrogenase activity		
24956	EPFL2	OsEPFL2	EPIDERMAL PATTERNING FACTOR-LIKE 2 	EPIDERMAL PATTERNING FACTOR-LIKE2, EPF-LIKE 2	EPIDERMAL PATTERNING FACTOR-LIKE 2		2	PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape	Os02g0756100	LOC_Os02g51950.1				GO:0010052 - guard cell differentiation, GO:0010229 - inflorescence development, GO:0080050 - regulation of seed development, GO:0005576 - extracellular region	TO:0000621 - inflorescence development trait, TO:0000397 - grain size, TO:0000072 - awn length, TO:0002734 - awn presence, TO:0000653 - seed development trait	PO:0001083 - inflorescence development stage , PO:0009049 - inflorescence , PO:0001170 - seed development stage 
24957	APL	OsAPL	ALTERED PHLOEM DEVELOPMENT				2	homologous to a MYB family transcription factor promoting phloem development in Arabidopsis thaliana. TO:0000949: seedling growth and development trait. GO:0090351: seedling development. 	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os02g0174000	LOC_Os02g07770.1				GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0045892 - negative regulation of transcription, DNA-dependent	TO:0000455 - seed set percent, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000269 - 100-seed weight, TO:0000019 - seedling height	
24958	RHA1	OsRHA1	_	plasma membrane H+-ATPase subunit RHA1			6	TO:0000949: seedling growth and development trait.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity	Os06g0120732	LOC_Os06g02980.1				GO:0042776 - mitochondrial ATP synthesis coupled proton transport, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0005753 - mitochondrial proton-transporting ATP synthase complex, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0005524 - ATP binding	TO:0000397 - grain size, TO:0000396 - grain yield	
24959	RHA3	OsRHA3	_	vacuolar ATP synthase 98 kDa subunit			1		 Biochemical character	Os01g0834200	LOC_Os01g61780.1				GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain, GO:0051117 - ATPase binding, GO:0007035 - vacuolar acidification, GO:0016471 - vacuolar proton-transporting V-type ATPase complex, GO:0016021 - integral to membrane, GO:0046961 - proton-transporting ATPase activity, rotational mechanism		
24960	RHA5	OsRHA5	_	ATP synthase subunit alpha			3		 Biochemical character	Os03g0690700	LOC_Os03g48471.1						
24961	GL3.5	qGL3.5, OsRING456, RING456	GRAIN LENGTH 3.5	QTL for Grain length 3.5, RING-type E3 ubiquitin ligase 456			3	an IBR-RING zinc-finger-related protein. GO:1990904: ribonucleoprotein complex. 	 Seed - Morphological traits - Grain shape	Os03g0626100	LOC_Os03g42790.1				GO:0000209 - protein polyubiquitination, GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process, GO:0031624 - ubiquitin conjugating enzyme binding, GO:0005737 - cytoplasm, GO:0000151 - ubiquitin ligase complex, GO:0044260 - cellular macromolecule metabolic process, GO:0046872 - metal ion binding, GO:0004842 - ubiquitin-protein ligase activity, GO:0051512 - positive regulation of unidimensional cell growth, GO:0006511 - ubiquitin-dependent protein catabolic process	TO:0000734 - grain length, TO:0002730 - grain shape	
24962	TT3.2	OsTT3.2	THERMO-TOLERANCE 3.2	Thermo-tolerance 3.2		tt3.2	3		 Tolerance and resistance - Stress tolerance	Os03g0707200	LOC_Os03g49940.1				GO:0042651 - thylakoid membrane, GO:0016021 - integral to membrane, GO:0009408 - response to heat, GO:0009507 - chloroplast	TO:0000259 - heat tolerance	
24963	HLP1	OsHLP1	HVA22-LIKE PROTEIN 1	HVA22-like protein 1	HVA22-LIKE PROTEIN 1	oshlp1	11	GO:0140426: PAMP-triggered immunity signalling pathway. GO:1900150: regulation of defense response to fungus. GO:1990170: stress response to cadmium ion. GO:0098542: defense response to other organism. GO:2000786: positive regulation of autophagosome assembly. GO:0038024: cargo receptor activity.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os11g0156600	LOC_Os11g05800.1				GO:0046686 - response to cadmium ion, GO:0042742 - defense response to bacterium, GO:0002238 - response to molecule of fungal origin, GO:0005783 - endoplasmic reticulum, GO:0034976 - response to endoplasmic reticulum stress, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0002237 - response to molecule of bacterial origin, GO:0010200 - response to chitin, GO:0000045 - autophagic vacuole formation, GO:0005776 - autophagic vacuole, GO:0045732 - positive regulation of protein catabolic process, GO:0010508 - positive regulation of autophagy, GO:0031349 - positive regulation of defense response, GO:0016020 - membrane, GO:0016021 - integral to membrane, GO:0007029 - endoplasmic reticulum organization, GO:0050832 - defense response to fungus	TO:0000439 - fungal disease resistance, TO:0000074 - blast disease, TO:0000315 - bacterial disease resistance, TO:0000102 - phosphorus sensitivity, TO:0000112 - disease resistance	PO:0025034 - leaf , PO:0009005 - root 
24964	ZIP11	OsZIP11	ZRT/IRT-LIKE PROTEIN 11	ZRT/IRT-like protein 11, zinc transporter 11, ZRT-IRT-related protein 11, ZIP transporter 11, Zinc- and iron-regulating transport-like protein 11, Zn- and Fe-regulating transport-like protein 11	ZRT/IRT-LIKE PROTEIN 11		5	GO:0071577: zinc ion transmembrane transport. GO:1990641: response to iron ion starvation. TO:0006060: leaf chlorosis. TO:0020089: iron content trait. GO: 0120127: response to zinc ion starvation.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Seed - Physiological traits - Storage substances,  Seed - Morphological traits,  Coloration - Chlorophyll,  Reproductive organ - panicle,  Vegetative organ - Culm,  Vegetative organ - Leaf,  Biochemical character,  Character as QTL - Plant growth activity	Os05g0316100	LOC_Os05g25194.1, LOC_Os05g25194.2				GO:0046686 - response to cadmium ion, GO:0042594 - response to starvation, GO:0010269 - response to selenium ion, GO:0005802 - trans-Golgi network, GO:0006826 - iron ion transport, GO:0016021 - integral to membrane, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0005385 - zinc ion transmembrane transporter activity, GO:0046873 - metal ion transmembrane transporter activity, GO:0010042 - response to manganese ion, GO:0048316 - seed development	TO:0000351 - zinc sensitivity, TO:0000495 - chlorophyll content, TO:0000180 - spikelet fertility, TO:0000146 - seed length, TO:0000040 - panicle length, TO:0000653 - seed development trait, TO:0000032 - selenium sensitivity, TO:0000457 - total biomass yield, TO:0000357 - growth and development trait, TO:0000224 - iron sensitivity, TO:0000073 - manganese sensitivity, TO:0000382 - 1000-seed weight, TO:0000440 - grain number per plant, TO:0000207 - plant height	PO:0007616 - flowering stage , PO:0001170 - seed development stage 
24965	STS1	OsSTS1	SWOLLEN TAPETUM AND STERILITY 1				3		 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Biochemical character	Os03g0112800	LOC_Os03g02170.2, LOC_Os03g02170.3, LOC_Os03g02170.1				GO:0005783 - endoplasmic reticulum, GO:0008610 - lipid biosynthetic process, GO:0055088 - lipid homeostasis, GO:0016298 - lipase activity, GO:0048653 - anther development, GO:0016021 - integral to membrane, GO:0010208 - pollen wall assembly	TO:0000437 - male sterility	
24966	TAPE	OsTAPE	TETHERING PROTEIN OF ACTOMYOSIN TRANSPORT IN POLLEN TUBE ELONGATION	Tethering protein of actomyosin transport in pollen tube elongation	TETHERING PROTEIN OF ACTOMYOSIN TRANSPORT IN POLLEN TUBE ELONGATION	tape, tape-1, tape-2	9	A myosin XI adaptor. GO:0090406: pollen tube.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0125828	LOC_Os09g03890.1				GO:0009846 - pollen germination, GO:0009860 - pollen tube growth, GO:0005783 - endoplasmic reticulum	TO:0000437 - male sterility	PO:0025281 - pollen , PO:0025195 - pollen tube cell , PO:0001017 - M germinated pollen stage 
24967	_		_	myosin XI			2	a myosin XI  closely related to the maize OPAQUE1.		Os02g0777700	LOC_Os02g53740.3, LOC_Os02g53740.2				GO:0030048 - actin filament-based movement, GO:0003774 - motor activity, GO:0005516 - calmodulin binding, GO:0003779 - actin binding, GO:0005524 - ATP binding, GO:0016459 - myosin complex, GO:0007015 - actin filament organization		
24968	TPR75 	OsTPR075, TPR075, OsTPR75	TETRATRICOPEPTIDE REPEAT PROTEIN 75	tetratricopeptide repeat protein 075	TETRATRICOPEPTIDE REPEAT PROTEIN 75	Ostpr075	3	GO:2000028: regulation of photoperiodism, flowering.	 Reproductive organ - Heading date	Os03g0200600	LOC_Os03g10350.2, LOC_Os03g10350.1				GO:0031234 - extrinsic to internal side of plasma membrane, GO:0043229 - intracellular organelle, GO:0048573 - photoperiodism, flowering, GO:0051223 - regulation of protein transport	TO:0000137 - days to heading, TO:0002616 - flowering time	
24969	SRR1	OsSRR1, OsGT14;1, GT14;1	_	Glycosyltransferase 14;1, glycosyltransferase gene family 14 protein 1	GLYCOSYLTRANSFERASE 14;1	srr1	8	GO:2001006: regulation of cellulose biosynthetic process. TO:0000993: cellulose content.	 Vegetative organ - Root,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Culm	Os08g0143500	LOC_Os08g04790.1				GO:0030244 - cellulose biosynthetic process, GO:0048364 - root development, GO:0048367 - shoot development, GO:0010447 - response to acidity, GO:0016020 - membrane, GO:0015020 - glucuronosyltransferase activity, GO:0005794 - Golgi apparatus	TO:0000227 - root length, TO:0000479 - acid sensitivity, TO:0000656 - root development trait, TO:0000051 - stem strength, TO:0000396 - grain yield, TO:0000254 - growth media pH sensitivity	PO:0009047 - stem , PO:0007520 - root development stage , PO:0020141 - stem node , PO:0009038 - palea , PO:0009037 - lemma , PO:0009005 - root , PO:0025527 - shoot system development stage 
24970	ORP1C	OsORP1C	OXYSTEROL-BINDING RELATED PROTEIN 1C	oxysterol-binding related protein 1C, OSBP-related protein 1C, oxysterol-binding protein-related protein 1C	OXYSTEROL-BINDING RELATED PROTEIN 1C		3	GO:1900426: positive regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity,  Reproductive organ - Heading date,  Reproductive organ - Pollination, fertilization, fertility - Sterility,  Character as QTL - Yield and productivity	Os03g0704700	LOC_Os03g49770.2, LOC_Os03g49770.1				GO:0002237 - response to molecule of bacterial origin, GO:0042742 - defense response to bacterium, GO:0008289 - lipid binding	TO:0000485 - sterility related trait, TO:0000371 - yield trait, TO:0000207 - plant height, TO:0000175 - bacterial blight disease resistance, TO:0000357 - growth and development trait, TO:0000455 - seed set percent, TO:0000137 - days to heading	
24971	NAOD	OsNAOD	N-ACETYLORNITHINE DEACETYLASE	N-acetylornithine deacetylase	N-ACETYLORNITHINE DEACETYLASE		2		 Tolerance and resistance - Stress tolerance,  Biochemical character,  Vegetative organ - Root	Os02g0690800	LOC_Os02g46520.1				GO:0006525 - arginine metabolic process, GO:0008777 - acetylornithine deacetylase activity, GO:0016787 - hydrolase activity, GO:0006592 - ornithine biosynthetic process		
24972	ZAS	OsZAS, OsCCD8e, CCD8e	ZAXINONE SYNTHASE	Zaxinone synthase, carotenoid-cleavage dioxygenase 8e	ZAXINONE SYNTHASE	zas	9	GO:0036377: arbuscular mycorrhizal association. GO:1901601: strigolactone biosynthetic process. GO:0085041: arbuscule. TO:0020103: adventitious root length.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance,  Biochemical character,  Character as QTL - Plant growth activity,  Vegetative organ - Root	Os09g0321200	LOC_Os09g15240.1				GO:0045927 - positive regulation of growth, GO:0048364 - root development, GO:0075330 - positive regulation of arbuscule formation for nutrient acquisition from host, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009267 - cellular response to starvation, GO:0009507 - chloroplast, GO:0046872 - metal ion binding, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0009570 - chloroplast stroma, GO:0009610 - response to symbiotic fungus, GO:0010436 - carotenoid dioxygenase activity, GO:0016121 - carotene catabolic process, GO:0043289 - apocarotenoid biosynthetic process	TO:0000346 - tiller number, TO:0000656 - root development trait, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0001006 - adventitious root number, TO:0002759 - grain number, TO:0000457 - total biomass yield, TO:0000227 - root length, TO:0000357 - growth and development trait, TO:0000444 - parasitic weed, TO:0000476 - growth hormone content	PO:0000025 - root tip , PO:0007131 - seedling development stage , PO:0009005 - root , PO:0007520 - root development stage 
24974	_		_	alpha-glucosidase 2			7		 Biochemical character	Os07g0421300	LOC_Os07g23944.1				GO:0044275 - cellular carbohydrate catabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0030246 - carbohydrate binding, GO:0051707 - response to other organism		
24975	GEX1	OsGEX1	GAMETE EXPRESSED 1	gamete expressed 1	GAMETE EXPRESSED 1		9	rice ortholog of Arabidopsis gamete expressed 1 (GEX1).	 Reproductive organ - Pollination, fertilization, fertility	Os09g0442400	LOC_Os09g27040.1				GO:0009566 - fertilization, GO:0016021 - integral to membrane, GO:0000740 - nuclear membrane fusion, GO:0007344 - pronuclear fusion		PO:0001170 - seed development stage 
24976	8GSX7	Os8GSX7	_				1			Os01g0538000	LOC_Os01g35580.8, LOC_Os01g35580.1, LOC_Os01g35580.2, LOC_Os01g35580.3, LOC_Os01g35580.4, LOC_Os01g35580.5, LOC_Os01g35580.6, LOC_Os01g35580.7						PO:0009039 - glume , PO:0009005 - root , PO:0009046 - flower 
24977	2R_MYB1 	Os2R_MYB1	R2R3-MYB TRANSCRIPTION FACTOR 1	R2R3-MYB Transcription Factor 1	R2R3-MYB TRANSCRIPTION FACTOR 1		1		 Tolerance and resistance - Stress tolerance	Os01g0128000	LOC_Os01g03720.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0043565 - sequence-specific DNA binding, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	
24978	2R_MYB3	Os2R_MYB3	R2R3-MYB TRANSCRIPTION FACTOR 3	R2R3-MYB Transcription Factor 3	R2R3-MYB TRANSCRIPTION FACTOR 3		1		 Tolerance and resistance - Stress tolerance	Os01g0169100	LOC_Os01g07450.1				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	
24979	2R_MYB7	Os2R_MYB7	R2R3-MYB TRANSCRIPTION FACTOR 7	R2R3-MYB Transcription Factor 7	R2R3-MYB TRANSCRIPTION FACTOR 7		1		 Tolerance and resistance - Stress tolerance	Os01g0305900	LOC_Os01g19970.1				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0003677 - DNA binding	TO:0000276 - drought tolerance	
24980	2R_MYB13	Os2R_MYB13	R2R3-MYB TRANSCRIPTION FACTOR 13	R2R3-MYB Transcription Factor 13	R2R3-MYB TRANSCRIPTION FACTOR 13		1			Os01g0709000	LOC_Os01g51260.1				GO:0003677 - DNA binding		
24981	2R_MYB14	Os2R_MYB14	R2R3-MYB TRANSCRIPTION FACTOR 14	R2R3-MYB Transcription Factor 14	R2R3-MYB TRANSCRIPTION FACTOR 14		1			Os01g0722300	LOC_Os01g52410.1				GO:0003677 - DNA binding		
24982	2R_MYB21	Os2R_MYB21	R2R3-MYB TRANSCRIPTION FACTOR 21	R2R3-MYB Transcription Factor 21	R2R3-MYB TRANSCRIPTION FACTOR 21		2		 Tolerance and resistance - Stress tolerance	Os02g0114800	LOC_Os02g02370.1				GO:0003677 - DNA binding, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	
24983	2R_MYB24	Os2R_MYB24	R2R3-MYB TRANSCRIPTION FACTOR 24	R2R3-MYB Transcription Factor 24	R2R3-MYB TRANSCRIPTION FACTOR 24		2			Os02g0579300	LOC_Os02g36890.1				GO:0003677 - DNA binding		
24984	2R_MYB31	Os2R_MYB31	R2R3-MYB TRANSCRIPTION FACTOR 31	R2R3-MYB Transcription Factor 31	R2R3-MYB TRANSCRIPTION FACTOR 31		2	CT835463.		Os02g0754400	LOC_Os02g51799.1				GO:0003677 - DNA binding		
24985	2R_MYB33	Os2R_MYB33	R2R3-MYB TRANSCRIPTION FACTOR 33	R2R3-MYB Transcription Factor 33	R2R3-MYB TRANSCRIPTION FACTOR 33		3			Os03g0142600	LOC_Os03g04900.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity		
24986	2R_MYB34	Os2R_MYB34	R2R3-MYB TRANSCRIPTION FACTOR 34	R2R3-MYB Transcription Factor 34	R2R3-MYB TRANSCRIPTION FACTOR 34		3	GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.		Os03g0236300	LOC_Os03g13310.1				GO:0003700 - transcription factor activity, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
24987	2R_MYB35	Os2R_MYB35	R2R3-MYB TRANSCRIPTION FACTOR 35	R2R3-MYB Transcription Factor 35	R2R3-MYB TRANSCRIPTION FACTOR 35		3			Os03g0309600	LOC_Os03g19630.1						
24988	2R_MYB37	Os2R_MYB37	R2R3-MYB TRANSCRIPTION FACTOR 37	R2R3-MYB Transcription Factor 37	R2R3-MYB TRANSCRIPTION FACTOR 37		3			Os03g0378500	LOC_Os03g26130.1						
24989	2R_MYB48	Os2R_MYB48	R2R3-MYB TRANSCRIPTION FACTOR 48	R2R3-MYB Transcription Factor 48	R2R3-MYB TRANSCRIPTION FACTOR 48		4			Os04g0533200	LOC_Os04g45060.1						
24990	2R_MYB50	Os2R_MYB50	R2R3-MYB TRANSCRIPTION FACTOR 50	R2R3-MYB Transcription Factor 50	R2R3-MYB TRANSCRIPTION FACTOR 50		4			Os04g0593200	LOC_Os04g50680.1				GO:0003677 - DNA binding		
24991	2R_MYB52	Os2R_MYB52	R2R3-MYB TRANSCRIPTION FACTOR 52	R2R3-MYB Transcription Factor 52	R2R3-MYB TRANSCRIPTION FACTOR 52		5			Os05g0132700	LOC_Os05g04210.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity		
24992	2R_MYB54	Os2R_MYB54	R2R3-MYB TRANSCRIPTION FACTOR 54	R2R3-MYB Transcription Factor 54	R2R3-MYB TRANSCRIPTION FACTOR 54		5	GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.		Os05g0350900	LOC_Os05g28320.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding		
24993	2R_MYB57	Os2R_MYB57	R2R3-MYB TRANSCRIPTION FACTOR 57	R2R3-MYB Transcription Factor 57	R2R3-MYB TRANSCRIPTION FACTOR 57		5			Os05g0449900	LOC_Os05g37730.1				GO:0003677 - DNA binding		
24994	2R_MYB64	Os2R_MYB64	R2R3-MYB TRANSCRIPTION FACTOR 64	R2R3-MYB Transcription Factor 64	R2R3-MYB TRANSCRIPTION FACTOR 64		6			Os06g0221000	LOC_Os06g11780.1				GO:0003677 - DNA binding		
24995	2R_MYB65	Os2R_MYB65	R2R3-MYB TRANSCRIPTION FACTOR 65	R2R3-MYB Transcription Factor 65	R2R3-MYB TRANSCRIPTION FACTOR 65		6	GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.		Os06g0250760	LOC_Os06g14010.1				GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
24996	2R_MYB67	Os2R_MYB67	R2R3-MYB TRANSCRIPTION FACTOR 67	R2R3-MYB Transcription Factor 67	R2R3-MYB TRANSCRIPTION FACTOR 67		7			Os07g0222600	LOC_Os07g12130.1						
24997	2R_MYB69	Os2R_MYB69	R2R3-MYB TRANSCRIPTION FACTOR 69	R2R3-MYB Transcription Factor 69	R2R3-MYB TRANSCRIPTION FACTOR 69		7	GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.		Os07g0434300	LOC_Os07g25370.1				GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity		
24998	2R_MYB70	Os2R_MYB70	R2R3-MYB TRANSCRIPTION FACTOR 70	R2R3-MYB Transcription Factor 70	R2R3-MYB TRANSCRIPTION FACTOR 70		7			Os07g0497500	LOC_Os07g31470.1				GO:0003677 - DNA binding		
24999	2R_MYB78	Os2R_MYB78	R2R3-MYB TRANSCRIPTION FACTOR 78	R2R3-MYB Transcription Factor 78	R2R3-MYB TRANSCRIPTION FACTOR 78		8	CT837778.		Os08g0437300	LOC_Os08g33940.1				GO:0003677 - DNA binding, GO:0009733 - response to auxin stimulus		
25000	2R_MYB79	Os2R_MYB79	R2R3-MYB TRANSCRIPTION FACTOR 79	R2R3-MYB Transcription Factor 79	R2R3-MYB TRANSCRIPTION FACTOR 79		8	GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.		Os08g0450900	LOC_Os08g34960.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent		
25001	2R_MYB83	Os2R_MYB83	R2R3-MYB TRANSCRIPTION FACTOR 83	R2R3-MYB Transcription Factor 83	R2R3-MYB TRANSCRIPTION FACTOR 83		9	CT835888.		Os09g0414300	LOC_Os09g24800.1				GO:0003677 - DNA binding		
25002	2R_MYB88	Os2R_MYB88	R2R3-MYB TRANSCRIPTION FACTOR 88	R2R3-MYB Transcription Factor 88	R2R3-MYB TRANSCRIPTION FACTOR 88		10			Os10g0499900	LOC_Os10g35660.1						
25003	ALKBH8B	OsALKBH8B	ALKB HOMOLOG 8B	hydroxyproline-rich glycoprotein family protein, AlkB homolog 8B	ALKB HOMOLOG 8B		3	a candidate gene for salt tolerance germinability (STG). Alkylation B family protein. N6-methyladenosine (m6A) methylation regulatory gene, eraser enzyme (RNA demethylase).	 Tolerance and resistance - Stress tolerance	Os03g0238800	LOC_Os03g13560.1				GO:0006402 - mRNA catabolic process, GO:0003729 - mRNA binding, GO:0032451 - demethylase activity, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009009 - plant embryo 
25004	_	SAP	_	senescence-associated protein			3	a candidate gene for salt tolerance germinability (STG). 	 Tolerance and resistance - Stress tolerance	Os03g0241900	LOC_Os03g13840.2, LOC_Os03g13840.1				GO:0005886 - plasma membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009009 - plant embryo 
25005	E1	OsE1	_	E1 enzyme			11	rice homolog of human UBA1 (E1).	 Biochemical character	Os11g0106400	LOC_Os11g01510.2, LOC_Os11g01510.1, LOC_Os11g01510.3				GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004839 - ubiquitin activating enzyme activity, GO:0005524 - ATP binding, GO:0006974 - response to DNA damage stimulus, GO:0032446 - protein modification by small protein conjugation, GO:0016567 - protein ubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0008641 - small protein activating enzyme activity		
25006	_	OsPolyUb, PolyUb	_	OsPoly-Ubiquitin, Poly-Ubiquitin			6	rice homolog of human Poly-Ubiquitin.	 Biochemical character	Os06g0673500					GO:0031625 - ubiquitin protein ligase binding, GO:0019941 - modification-dependent protein catabolic process, GO:0016567 - protein ubiquitination, GO:0031386 - protein tag, GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus		
25007	_	cpSRP54	_	chloroplast signal recognition particle 54, 54-kDa subunit of the signal recognition particle			1			Os01g0772800	LOC_Os01g56600.1				GO:0005786 - signal recognition particle, endoplasmic reticulum targeting, GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation, GO:0030942 - endoplasmic reticulum signal peptide binding, GO:0005829 - cytosol, GO:0008312 - 7S RNA binding, GO:0003924 - GTPase activity, GO:0005525 - GTP binding		
25008	_	cpSRP54	_	chloroplast signal recognition particle 54, 54-kDa subunit of the signal recognition particle			5			Os05g0509500	LOC_Os05g43390.1				GO:0006614 - SRP-dependent cotranslational protein targeting to membrane, GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation, GO:0030942 - endoplasmic reticulum signal peptide binding, GO:0005829 - cytosol, GO:0008312 - 7S RNA binding, GO:0003924 - GTPase activity, GO:0005525 - GTP binding, GO:0005786 - signal recognition particle, endoplasmic reticulum targeting		
25009	_	OsSDR, SDR	_	short-chain dehydrogenase/reductase protein-like (SDR) gene			2		 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Coloration - Others	Os02g0640800	LOC_Os02g42810.1				GO:0016117 - carotenoid biosynthetic process	TO:0000326 - leaf color	
25010	COMT6	OsCOMT6	CAFFEIC ACID O-METHYLTRANSFERASE 6	Caffeic Acid O-Methyltransferase 6	CAFFEIC ACID O-METHYLTRANSFERASE 6		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0176200	LOC_Os04g09680.1				GO:0005739 - mitochondrion, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009651 - response to salt stress, GO:0019438 - aromatic compound biosynthetic process, GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity	TO:0006001 - salt tolerance	PO:0025034 - leaf 
25011	COMT21	OsCOMT21	CAFFEIC ACID O-METHYLTRANSFERASE 21	Caffeic Acid O-Methyltransferase 21	CAFFEIC ACID O-METHYLTRANSFERASE 21		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0304050	LOC_Os11g19880.1				GO:0008171 - O-methyltransferase activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast, GO:0046983 - protein dimerization activity, GO:0019438 - aromatic compound biosynthetic process, GO:0009651 - response to salt stress, GO:0032259 - methylation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0025034 - leaf 
25012	COMT22	OsCOMT22	CAFFEIC ACID O-METHYLTRANSFERASE 22	Caffeic Acid O-Methyltransferase 22	CAFFEIC ACID O-METHYLTRANSFERASE 22		11	CT836570.	 Biochemical character	Os11g0305400	LOC_Os11g20040.1				GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0005737 - cytoplasm, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process		PO:0009005 - root 
25013	COMT23	OsCOMT23	CAFFEIC ACID O-METHYLTRANSFERASE 23	Caffeic Acid O-Methyltransferase 23	CAFFEIC ACID O-METHYLTRANSFERASE 23		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0306300	LOC_Os11g20080.1				GO:0046983 - protein dimerization activity, GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0032259 - methylation, GO:0019438 - aromatic compound biosynthetic process, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0008171 - O-methyltransferase activity	TO:0000276 - drought tolerance	
25014	COMT24	OsCOMT24	CAFFEIC ACID O-METHYLTRANSFERASE 24	Caffeic Acid O-Methyltransferase 24	CAFFEIC ACID O-METHYLTRANSFERASE 24		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0306400	LOC_Os11g20090.1				GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity, GO:0019438 - aromatic compound biosynthetic process, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity	TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0009049 - inflorescence 
25015	COMT25	OsCOMT25	CAFFEIC ACID O-METHYLTRANSFERASE 25	Caffeic Acid O-Methyltransferase 25	CAFFEIC ACID O-METHYLTRANSFERASE 25		11		 Biochemical character	Os11g0307300	LOC_Os11g20160.1				GO:0019438 - aromatic compound biosynthetic process, GO:0032259 - methylation, GO:0005739 - mitochondrion, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity		PO:0009005 - root 
25016	COMT28	OsCOMT28	CAFFEIC ACID O-METHYLTRANSFERASE 28	Caffeic Acid O-Methyltransferase 28	CAFFEIC ACID O-METHYLTRANSFERASE 28		12	CU406772 (Oryza rufipogon).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0202700	LOC_Os12g10140.1				GO:0009651 - response to salt stress, GO:0046983 - protein dimerization activity, GO:0008171 - O-methyltransferase activity, GO:0032259 - methylation, GO:0047429 - nucleoside-triphosphate diphosphatase activity, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009047 - stem 
25017	COMT32	OsCOMT32	CAFFEIC ACID O-METHYLTRANSFERASE 32	Caffeic Acid O-Methyltransferase 32	CAFFEIC ACID O-METHYLTRANSFERASE 32		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0444800	LOC_Os12g25820.1				GO:0019438 - aromatic compound biosynthetic process, GO:0009651 - response to salt stress, GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0009507 - chloroplast, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity	TO:0006001 - salt tolerance	PO:0009049 - inflorescence 
25018	COMT33	OsCOMT33	CAFFEIC ACID O-METHYLTRANSFERASE 33	Caffeic Acid O-Methyltransferase 33	CAFFEIC ACID O-METHYLTRANSFERASE 33		12		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0445300	LOC_Os12g25870.1				GO:0019438 - aromatic compound biosynthetic process, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0032259 - methylation, GO:0008171 - O-methyltransferase activity, GO:0046983 - protein dimerization activity, GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity	TO:0000276 - drought tolerance	PO:0025034 - leaf 
25019	COP10	OsCOP10	CONSTITUTIVE PHOTOMORPHOGENIC 10			oscop10	7	GO:0061631: ubiquitin conjugating enzyme activity.	 Tolerance and resistance - Stress tolerance,  Coloration - Others,  Biochemical character,  Seed - Morphological traits - Embryo	Os07g0577400	LOC_Os07g38940.1				GO:0010099 - regulation of photomorphogenesis, GO:0009962 - regulation of flavonoid biosynthetic process, GO:0009793 - embryonic development ending in seed dormancy, GO:0005634 - nucleus, GO:0000209 - protein polyubiquitination	TO:0000707 - pericarp color, TO:0000064 - embryo related trait, TO:0000653 - seed development trait	PO:0001170 - seed development stage , PO:0009010 - seed 
25020	RF19	OsRf19, Rf19	RESTORATION OF FERTILITY 19				10	The restorer gene OsRf19 encodes a pentatricopeptide repeat (PPR) protein targeted to mitochondria, where it mediates the cleavage of FA182 transcripts, thus restoring male fertility.. OsRf19 was delimited between two markers, Rf1D3 and TMRf1M10, spanning a 16-kb region of chromosome 10.  (Jiang et al. 2022).	 Reproductive organ - Pollination, fertilization, fertility - Fertility restoration						GO:0005739 - mitochondrion	TO:0000308 - male fertility restoration trait	
25021	SOT	OsSOT	SULFOTRANSFERASE		SULFOTRANSFERASE		9	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os09g0256100	LOC_Os09g08190.1				GO:0005737 - cytoplasm, GO:0044272 - sulfur compound biosynthetic process, GO:0051923 - sulfation, GO:0008146 - sulfotransferase activity		
25022	_	OsACO4, ACO4	_	ACC oxidase 4, AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 4			9	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character		LOC_Os06g14390.1				GO:0044272 - sulfur compound biosynthetic process		
25023	_	OsSta2, Sta2	_				2	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os02g0655300	LOC_Os02g43830.2, LOC_Os02g43830.1				GO:0016836 - hydro-lyase activity, GO:0044272 - sulfur compound biosynthetic process, GO:0043436 - oxoacid metabolic process		
25024	_	OsIAGLU, IAGLU	_	INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE			9	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os09g0284800	LOC_Os09g11290.1				GO:0044272 - sulfur compound biosynthetic process		
25025	CYP79A10	OsCYP79A10	CYTOCHROME P450 79A10	Cytochrome P450 79A10	CYTOCHROME P450 79A10		4	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os04g0171600	LOC_Os04g08824.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016020 - membrane, GO:0044272 - sulfur compound biosynthetic process, GO:0020037 - heme binding		
25026	FMOGS-OX	OsFMOGS-OX	FLAVIN-CONTAINING MONOOXYGENASE WITH GS-OX DOMAIN	flavin-containing monooxygenase with GS-OX domain	FLAVIN-CONTAINING MONOOXYGENASE WITH GS-OX DOMAIN		6	SCC (sulfur-containing compound) biosynthetic gene. 	 Biochemical character	Os06g0346600	LOC_Os06g23800.2				GO:0044272 - sulfur compound biosynthetic process		
25027	SKL2	OsSKL2	SHIKIMATE KINASE-LIKE 2	shikimate kinase-like 2	SHIKIMATE KINASE-LIKE 2		10	GO:1902584: positive regulation of response to water deprivation. GO:1901002: positive regulation of response to salt stress. GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os10g0577700	LOC_Os10g42700.1				GO:0009507 - chloroplast, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0042542 - response to hydrogen peroxide, GO:0009737 - response to abscisic acid stimulus, GO:0009738 - abscisic acid mediated signaling, GO:0006979 - response to oxidative stress	TO:0006001 - salt tolerance, TO:0002657 - oxidative stress, TO:0000615 - abscisic acid sensitivity, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance	
25028	LPAT2	OsLPAT2	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 2	Lysophosphatidic acid acyltransferase 2	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 2	lpat2	11		 Biochemical character	Os11g0637800	LOC_Os11g41900.1				GO:0009414 - response to water deprivation, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0006654 - phosphatidic acid biosynthetic process, GO:0012505 - endomembrane system, GO:0016020 - membrane, GO:0005783 - endoplasmic reticulum, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity, GO:0050801 - ion homeostasis, GO:0016746 - transferase activity, transferring acyl groups, GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	PO:0025034 - leaf , PO:0009047 - stem , PO:0020104 - leaf sheath , PO:0009005 - root 
25029	LPAT1	OsLPAT1	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 1	Lysophosphatidic acid acyltransferase 1	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 1		10		 Biochemical character	Os10g0497100	LOC_Os10g35390.1				GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0008654 - phospholipid biosynthetic process, GO:0031969 - chloroplast membrane, GO:0006655 - phosphatidylglycerol biosynthetic process, GO:0006654 - phosphatidic acid biosynthetic process, GO:0009793 - embryonic development ending in seed dormancy, GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity, GO:0016020 - membrane		
25030	LPAT3	OsLPAT3	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 3	Lysophosphatidic acid acyltransferase 3	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 3		4	CT829911.	 Biochemical character	Os04g0625200	LOC_Os04g53370.1				GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity, GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0006654 - phosphatidic acid biosynthetic process, GO:0031969 - chloroplast membrane, GO:0009793 - embryonic development ending in seed dormancy, GO:0006655 - phosphatidylglycerol biosynthetic process		
25031	LPAT4	OsLPAT4	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 4	Lysophosphatidic acid acyltransferase 4	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 4		5		 Biochemical character	Os05g0502200	LOC_Os05g42270.1				GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity, GO:0012505 - endomembrane system, GO:0016746 - transferase activity, transferring acyl groups, GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0016020 - membrane		
25032	LPAT5	OsLPAT5	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 5	Lysophosphatidic acid acyltransferase 5	LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE 5		1		 Biochemical character	Os01g0782500	LOC_Os01g57360.1				GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity, GO:0012505 - endomembrane system, GO:0016746 - transferase activity, transferring acyl groups, GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0016020 - membrane		
25033	NUDX1	OsNUDX1	NUDIX HYDROLASE 1	Nudix Hydrolase 1	NUDIX HYDROLASE 1		6	GO:0035529: NADH pyrophosphatase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0634300	LOC_Os06g42790.3, LOC_Os06g42790.2, LOC_Os06g42790.1				GO:0010225 - response to UV-C, GO:0047631 - ADP-ribose diphosphatase activity, GO:0051287 - NAD or NADH binding, GO:0016787 - hydrolase activity	TO:0000160 - UV light sensitivity	
25034	NUDX2	OsNUDX2	NUDIX HYDROLASE 2	Nudix Hydrolase 2	NUDIX HYDROLASE 2		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0793300	LOC_Os02g55030.1				GO:0046872 - metal ion binding, GO:0005737 - cytoplasm, GO:0016787 - hydrolase activity, GO:0010225 - response to UV-C, GO:0008239 - dipeptidyl-peptidase activity	TO:0000160 - UV light sensitivity	
25035	NUDX3	OsNUDX3	NUDIX HYDROLASE 3	Nudix Hydrolase 3	NUDIX HYDROLASE 3		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0255400	LOC_Os06g14420.1				GO:0005634 - nucleus, GO:0010225 - response to UV-C, GO:0016787 - hydrolase activity, GO:0005737 - cytoplasm	TO:0000160 - UV light sensitivity	
25036	NUDX4	OsNUDX4	NUDIX HYDROLASE 4	Nudix Hydrolase 4	NUDIX HYDROLASE 4		5	GO:0052751: GDP-mannose hydrolase activity. GO:0071242: cellular response to ammonium ion.	 Biochemical character	Os05g0117500	LOC_Os05g02640.1				GO:0005737 - cytoplasm		
25037	NUDX5	OsNUDX5	NUDIX HYDROLASE 5	Nudix Hydrolase 5	NUDIX HYDROLASE 5		5		 Biochemical character	Os05g0209400	LOC_Os05g11870.1				GO:0010945 - CoA pyrophosphatase activity, GO:0015938 - coenzyme A catabolic process, GO:0003986 - acetyl-CoA hydrolase activity		
25038	NUDX6	OsNUDX6	NUDIX HYDROLASE 6	Nudix Hydrolase 6	NUDIX HYDROLASE 6		4		 Biochemical character	Os04g0399300	LOC_Os04g32740.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0016787 - hydrolase activity		
25039	NUDX7	OsNUDX7, OsNUDX14, NUDX14	NUDIX HYDROLASE 7	Nudix Hydrolase 7	NUDIX HYDROLASE 7	nudx14	6	closely related to AtNUDX14. OsNUDX14 in Li et al. 2022. PO:0030123: panicle inflorescence. GO:1901141: regulation of lignin biosynthetic process.	 Character as QTL - Grain quality,  Character as QTL - Plant growth activity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Reproductive organ - Heading date,  Seed - Physiological traits - Storage substances	Os06g0129700	LOC_Os06g03910.1				GO:0009809 - lignin biosynthetic process, GO:0019693 - ribose phosphate metabolic process, GO:0048573 - photoperiodism, flowering, GO:0009507 - chloroplast, GO:0080042 - ADP-glucose pyrophosphohydrolase activity, GO:0080041 - ADP-ribose pyrophosphohydrolase activity, GO:0006753 - nucleoside phosphate metabolic process, GO:0010225 - response to UV-C, GO:0005739 - mitochondrion	TO:0000379 - cool paste viscosity, TO:0000207 - plant height, TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000124 - flag leaf angle, TO:0000357 - growth and development trait, TO:0000266 - chalky endosperm, TO:0000160 - UV light sensitivity, TO:0000162 - seed quality, TO:0000134 - alkali digestion	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009047 - stem , PO:0009005 - root , PO:0009049 - inflorescence 
25040	NUDX8	OsNUDX8, OsNUDX21, NUDX21	NUDIX HYDROLASE 8	Nudix Hydrolase 8	NUDIX HYDROLASE 8		2	OsNUDX21 in Xu et al. 2023.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0734300	LOC_Os02g50130.1				GO:0005737 - cytoplasm, GO:0010225 - response to UV-C, GO:0005634 - nucleus, GO:0050832 - defense response to fungus, GO:0016787 - hydrolase activity	TO:0000074 - blast disease, TO:0000160 - UV light sensitivity	
25041	NUDX9	OsNUDX9	NUDIX HYDROLASE 9	Nudix Hydrolase 9	NUDIX HYDROLASE 9		6	GO:0035529: NADH pyrophosphatase activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0141166	LOC_Os06g04910.1				GO:0000210 - NAD+ diphosphatase activity, GO:0046872 - metal ion binding, GO:0009507 - chloroplast, GO:0010225 - response to UV-C	TO:0000160 - UV light sensitivity	
25042	NUDX10	OsNUDX10	NUDIX HYDROLASE 10	Nudix Hydrolase 10	NUDIX HYDROLASE 10		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0322200	LOC_Os09g15340.1				GO:0009229 - thiamin diphosphate biosynthetic process, GO:0004788 - thiamin diphosphokinase activity, GO:0010225 - response to UV-C	TO:0000160 - UV light sensitivity	
25043	NUDX11	OsNUDX11	NUDIX HYDROLASE 11	Nudix Hydrolase 11	NUDIX HYDROLASE 11		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0553300	LOC_Os09g38040.1, LOC_Os09g38040.2				GO:0009416 - response to light stimulus, GO:0010225 - response to UV-C, GO:0009507 - chloroplast, GO:0047884 - FAD diphosphatase activity, GO:0042726 - riboflavin and derivative metabolic process	TO:0000160 - UV light sensitivity	
25044	NUDX12	OsNUDX12, OsSTA61	NUDIX HYDROLASE 12	Nudix Hydrolase 12	NUDIX HYDROLASE 12		2	a mature anther-preferentially expressed gene. 	 Reproductive organ - Spikelet, flower, glume, awn,  Biochemical character	Os02g0520100	LOC_Os02g32060.3, LOC_Os02g32060.1, LOC_Os02g32060.2				GO:0005737 - cytoplasm, GO:0016787 - hydrolase activity, GO:0005634 - nucleus		PO:0009066 - anther 
25045	NUDX13	OsNUDX13	NUDIX HYDROLASE 13	Nudix Hydrolase 13	NUDIX HYDROLASE 13		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0531700	LOC_Os11g32750.1, LOC_Os11g32750.2				GO:0016787 - hydrolase activity, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0010225 - response to UV-C	TO:0000160 - UV light sensitivity	
25046	NUDX14	OsNUDX14	NUDIX HYDROLASE 14	Nudix Hydrolase 14	NUDIX HYDROLASE 14		8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0375900	LOC_Os08g28840.1				GO:0010945 - CoA pyrophosphatase activity, GO:0010225 - response to UV-C, GO:0015938 - coenzyme A catabolic process, GO:0003986 - acetyl-CoA hydrolase activity	TO:0000160 - UV light sensitivity	
25047	NUDX15	OsNUDX15	NUDIX HYDROLASE 15	Nudix Hydrolase 15	NUDIX HYDROLASE 15		7		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os07g0212300	LOC_Os07g11120.1				GO:0010225 - response to UV-C, GO:0016787 - hydrolase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0000160 - UV light sensitivity	
25049	NUDX17	OsNUDX17	NUDIX HYDROLASE 17	Nudix Hydrolase 17	NUDIX HYDROLASE 17		6		 Biochemical character	Os06g0712200	LOC_Os06g49780.1						
25050	TBP2.1	OsTBP2.1	TATA-BOX BINDING PROTEIN 2.1	TATA binding protein 2.1	TATA-BOX BINDING PROTEIN 2	ostbp2.1	12	GO:0140223: general transcription initiation factor activity.	 Vegetative organ - Culm,  Other,  Character as QTL - Yield and productivity,  Reproductive organ - panicle	Os12g0580300	LOC_Os12g39070.1				GO:0045927 - positive regulation of growth, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006352 - transcription initiation, GO:0016251 - general RNA polymerase II transcription factor activity	TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0000346 - tiller number, TO:0000262 - panicle shape, TO:0000207 - plant height, TO:0000352 - plant dry weight, TO:0000455 - seed set percent, TO:0000447 - filled grain number, TO:0000040 - panicle length	
25051	INH2	OsINH2	INHIBITOR 2	Inhibitor-2, protein phosphatase 1 regulatory subunit OsINH2	INHIBITOR 2	osinh2, osinh2 #6, osinh2 #11	5	a homolog of AtINH2. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0000949: seedling growth and development trait. TO:1000022: anther morphology trait. GO:1902005: regulation of proline biosynthetic process.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Tolerance and resistance - Stress tolerance	Os05g0301600	LOC_Os05g23610.2, LOC_Os05g23610.1				GO:0043666 - regulation of phosphoprotein phosphatase activity, GO:0004864 - phosphoprotein phosphatase inhibitor activity, GO:0009966 - regulation of signal transduction, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0009555 - pollen development, GO:0009737 - response to abscisic acid stimulus, GO:0006950 - response to stress, GO:0009651 - response to salt stress, GO:0010187 - negative regulation of seed germination, GO:0009738 - abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0006561 - proline biosynthetic process	TO:0000095 - osmotic response sensitivity, TO:0000421 - pollen fertility, TO:0002759 - grain number, TO:0000187 - anther color, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage , PO:0020127 - primary root , PO:0000043 - crown root , PO:0025034 - leaf , PO:0009006 - shoot system , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0025281 - pollen , PO:0001007 - pollen development stage 
25052	INH3	OsINH3	INHIBITOR 3	Inhibitor-3, protein phosphatase 1 regulatory subunit OsINH3	INHIBITOR 3	osinh3, osinh3 #4, osinh3 #9	5	a homolog of AtINH3. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process. TO:0000949: seedling growth and development trait. TO:1000022: anther morphology trait. GO:1902005: regulation of proline biosynthetic process.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os05g0270400	LOC_Os05g18774.3, LOC_Os05g18774.2, LOC_Os05g18774.1				GO:0009737 - response to abscisic acid stimulus, GO:0008157 - protein phosphatase 1 binding, GO:0032515 - negative regulation of phosphoprotein phosphatase activity, GO:0004865 - protein serine/threonine phosphatase inhibitor activity, GO:0009738 - abscisic acid mediated signaling, GO:0006970 - response to osmotic stress, GO:0010187 - negative regulation of seed germination, GO:0009651 - response to salt stress, GO:0006950 - response to stress, GO:0009555 - pollen development, GO:0005634 - nucleus, GO:0009966 - regulation of signal transduction, GO:0006561 - proline biosynthetic process	TO:0000095 - osmotic response sensitivity, TO:0000421 - pollen fertility, TO:0002759 - grain number, TO:0000187 - anther color, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance	PO:0000043 - crown root , PO:0020127 - primary root , PO:0007057 - 0 seed germination stage , PO:0001007 - pollen development stage , PO:0025281 - pollen , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009006 - shoot system , PO:0025034 - leaf 
25053	TSJT1	OsTSJT1	_	stem-specific protein TSJT1			3		 Tolerance and resistance - Stress tolerance	Os03g0744600	LOC_Os03g53270.1, LOC_Os03g53270.2				GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity	
25054	WLP3	OsPRPL18, PRPL18, OsWLP3	WHITE LEAF AND PANICLE 3	Plastid ribosomal protein L18, white leaf and panicle3	PLASTID RIBOSOMAL PROTEIN L18	osprpl18-1, wlp3	3	Q8SAY0. GO:1990904: ribonucleoprotein complex. PO:0030123: panicle inflorescence. TO:0020097: stomatal opening. GO:1990069: stomatal opening.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Reproductive organ - panicle,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance,  Other,  Vegetative organ - Culm	Os03g0828100	LOC_Os03g61260.3, LOC_Os03g61260.4, LOC_Os03g61260.1				GO:0005840 - ribosome, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009658 - chloroplast organization, GO:0003735 - structural constituent of ribosome, GO:0009737 - response to abscisic acid stimulus, GO:0008097 - 5S rRNA binding, GO:0042254 - ribosome biogenesis, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0009266 - response to temperature stimulus, GO:0009408 - response to heat, GO:0010118 - stomatal movement, GO:0010374 - stomatal complex development, GO:0006412 - translation, GO:0008380 - RNA splicing, GO:0005730 - nucleolus, GO:0009507 - chloroplast	TO:0000566 - stomatal frequency, TO:0000259 - heat tolerance, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000357 - growth and development trait, TO:0000382 - 1000-seed weight, TO:0000447 - filled grain number, TO:0000346 - tiller number, TO:0000432 - temperature response trait, TO:0000040 - panicle length, TO:0000495 - chlorophyll content, TO:0000201 - panicle color, TO:0001016 - relative chlorophyll content, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020033 - coleoptile , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0009047 - stem 
25055	DRB1-4	OsDRB1-4	DOUBLE-STRANDED RNA BINDING PROTEIN 1-4	double-stranded RNA binding protein 1-4	DOUBLE-STRANDED RNA BINDING PROTEIN 1-4		8	JQ675676 (indica). Q6YW64.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0384100	LOC_Os08g29530.1, LOC_Os08g29530.2				GO:0006364 - rRNA processing, GO:0010468 - regulation of gene expression, GO:0009611 - response to wounding, GO:0005634 - nucleus, GO:0004525 - ribonuclease III activity, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0003725 - double-stranded RNA binding, GO:0006396 - RNA processing	TO:0000175 - bacterial blight disease resistance, TO:0000276 - drought tolerance	
25056	DRB3	OsDRB3	DOUBLE-STRANDED RNA BINDING PROTEIN 3	double-stranded RNA binding protein 3	DOUBLE-STRANDED RNA BINDING PROTEIN 3		5	JQ675677 (indica). Q0DKP4.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0150400	LOC_Os05g05790.1				GO:0010224 - response to UV-B, GO:0009611 - response to wounding, GO:0003725 - double-stranded RNA binding, GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000601 - UV-B light sensitivity, TO:0000175 - bacterial blight disease resistance	PO:0009010 - seed , PO:0009013 - portion of meristem tissue 
25057	CYP71X5	OsCYP71Z, CYP71Z, OsCYP71X5	CYTOCHROME P450 71X5	Cytochrome P450 71Z family protein, Cytochrome P450 71X5	CYTOCHROME P450 71X5		6	BGIOSGA020704.	 Biochemical character	Os06g0671300	LOC_Os06g45960.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0002238 - response to molecule of fungal origin, GO:0016020 - membrane		
25058	_		_	Momilactone synthase			3	a momilactone biosynthetic gene.	 Biochemical character	Os03g0833100	LOC_Os03g61740.1				GO:0051502 - diterpene phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin		
25059	_		_	indole-3-glycerol phosphate lyase			3	a benzoxazinoid biosynthetic gene.	 Biochemical character	Os03g0797500	LOC_Os03g58320.1				GO:0052315 - phytoalexin biosynthetic process, GO:0000162 - tryptophan biosynthetic process, GO:0002238 - response to molecule of fungal origin, GO:0005829 - cytosol, GO:0009507 - chloroplast, GO:0004834 - tryptophan synthase activity		
25060	_		_	indole-3-glycerol phosphate lyase			3	a benzoxazinoid biosynthetic gene.	 Biochemical character	Os03g0797300	LOC_Os03g58290.1				GO:0002238 - response to molecule of fungal origin, GO:0052315 - phytoalexin biosynthetic process		
25061	_		_	"\"2, 4-dihydroxy-1, 4-benzoxazin-3-one-glucoside deoxygenase\""			8	a benzoxazinoid biosynthetic gene.	 Biochemical character	Os08g0390700	LOC_Os08g30100.1				GO:0052315 - phytoalexin biosynthetic process, GO:0002238 - response to molecule of fungal origin		
25062	CYP71C1	OsCYP71C1	CYTOCHROME P450 71C1	Cytochrome P450 71C1	CYTOCHROME P450 71C1		1	BGIOSGA003715. cytochrome P450 superfamily gene. 	 Biochemical character	Os01g0543600	LOC_Os01g36294.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane, GO:0002238 - response to molecule of fungal origin		
25063	KASIII	OsKASIII	3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III	3-ketoacyl-acyl carrier protein synthase III	3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III		4		 Biochemical character	Os04g0643300	LOC_Os04g55060.1				GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity, GO:0006633 - fatty acid biosynthetic process		
25064	ENR1	OsENR1	ENOYL-ACYL-CARRIER-PROTEIN REDUCTASE	enoyl-acyl-carrier-protein reductase	ENOYL-ACYL-CARRIER-PROTEIN REDUCTASE		8	Q6Z0I4.	 Biochemical character	Os08g0327400	LOC_Os08g23810.2, LOC_Os08g23810.1				GO:0016631 - enoyl-[acyl-carrier-protein] reductase activity, GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity, GO:0009507 - chloroplast, GO:0006633 - fatty acid biosynthetic process		
25065	_		_	Fructose-bisphosphate aldolase			8		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os08g0120600	LOC_Os08g02700.1				GO:0005829 - cytosol, GO:0010224 - response to UV-B, GO:0006096 - glycolysis, GO:0030388 - fructose 1,6-bisphosphate metabolic process, GO:0004332 - fructose-bisphosphate aldolase activity	TO:0000601 - UV-B light sensitivity	
25066	_		_	Photosystem II CP43 reaction center protein			4		 Tolerance and resistance - Stress tolerance		LOC_Os04g16874.1				GO:0010224 - response to UV-B	TO:0000601 - UV-B light sensitivity	
25067	ZAS-L2	OsZAS-L2, OsZAS1c, ZAS1c, OsCCD8d, CCD8d	ZAXINONE SYNTHASE-LIKE 2	ZAS-Like 2, Zaxinone Synthase-Like 2, Zaxinone Synthase 1c, carotenoid-cleavage dioxygenase 8d	ZAXINONE SYNTHASE-LIKE 2		8		 Biochemical character	Os08g0371608	LOC_Os08g28430.1, LOC_Os08g28410.1				GO:0010436 - carotenoid dioxygenase activity, GO:0005737 - cytoplasm, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0009570 - chloroplast stroma, GO:0016121 - carotene catabolic process, GO:0046872 - metal ion binding		PO:0007014 - booting stage , PO:0007041 - inflorescence emergence stage 
25068	ZAS-L3	OsZAS-L3, OsZAS2, ZAS2	ZAXINONE SYNTHASE-LIKE 3	ZAS-Like 3, Zaxinone Synthase-Like 3, ZAXINONE SYNTHASE 2	ZAXINONE SYNTHASE-LIKE 3	Oszas2, zas2-d, zas2-g, zas2-a	6	GO:0036377: arbuscular mycorrhizal association. GO:1901601: strigolactone biosynthetic process,	 Character as QTL - Plant growth activity,  Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance	Os06g0162550					GO:0016116 - carotenoid metabolic process, GO:0009570 - chloroplast stroma, GO:0046872 - metal ion binding, GO:0044403 - symbiosis, encompassing mutualism through parasitism, GO:0009536 - plastid, GO:0010436 - carotenoid dioxygenase activity, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0009610 - response to symbiotic fungus, GO:0016121 - carotene catabolic process	TO:0000357 - growth and development trait, TO:0000346 - tiller number, TO:0000227 - root length, TO:0000102 - phosphorus sensitivity, TO:0000457 - total biomass yield	PO:0005772 - exodermis , PO:0000025 - root tip 
25069	A3-BTB1	OsA3-BTB1	A3 BTB-TYPE E3 UBIQUITIN LIGASE 1	A3 BTB-type E3 ubiquitin ligase 1			9			Os09g0338000	LOC_Os09g16850.1						
25070	A3-BTB2	OsA3-BTB2	A3 BTB-TYPE E3 UBIQUITIN LIGASE 2	A3 BTB-type E3 ubiquitin ligase 2			9			Os09g0338200	LOC_Os09g16870.1						
25071	ABB1	OsABB1	BTB-TYPE E3 UBIQUITIN LIGASE ABB1	BTB-type E3 ubiquitin ligase ABB1			6			Os06g0318200	LOC_Os06g21330.1						
25072	ABTB1	OsABTB1	BTB-TYPE E3 UBIQUITIN LIGASE ABTB1	BTB-type E3 ubiquitin ligase ABTB1			5			Os05g0398100	LOC_Os05g33050.1						
25073	B4-BTB1	OsB4-BTB1	B4 BTB-TYPE E3 UBIQUITIN LIGASE 1	B4 BTB-type E3 ubiquitin ligase 1			2			Os02g0612700	LOC_Os02g39910.1						
25074	B4-BTB2	OsB4-BTB2	B4 BTB-TYPE E3 UBIQUITIN LIGASE 2	B4 BTB-type E3 ubiquitin ligase 2			3			Os03g0264700	LOC_Os03g15800.1						
25075	B4-BTB3	OsB4-BTB3	B4 BTB-TYPE E3 UBIQUITIN LIGASE 3	B4 BTB-type E3 ubiquitin ligase 3			4			Os04g0501500	LOC_Os04g42310.1						
25076	B4-BTB4	OsB4-BTOsB4	B4 BTB-TYPE E3 UBIQUITIN LIGASE 4	B4 BTB-type E3 ubiquitin ligase 4			7			Os07g0419200	LOC_Os07g23720.1						
25077	BBF1	OsBBF1	BTB-TYPE E3 UBIQUITIN LIGASE BBF1	BTB-type E3 ubiquitin ligase BBF1			5			Os05g0345500	LOC_Os05g27880.2, LOC_Os05g27880.1, LOC_Os05g27880.3						
25078	BTB2	OsBTB2	BTB-TYPE E3 UBIQUITIN LIGASE 2	BTB-type E3 ubiquitin ligase 2			5			Os05g0201400	LOC_Os05g11190.1						
25079	BTB3	OsBTB3	BTB-TYPE E3 UBIQUITIN LIGASE 3	BTB-type E3 ubiquitin ligase 3			5				LOC_Os05g44530.1						
25080	BTB4	OsBTB4	BTB-TYPE E3 UBIQUITIN LIGASE 4	BTB-type E3 ubiquitin ligase 4			8			Os08g0516200	LOC_Os08g40460.1						
25081	BTB5	OsBTB5	BTB-TYPE E3 UBIQUITIN LIGASE 5	BTB-type E3 ubiquitin ligase 5			8			Os08g0523800	LOC_Os08g41230.1						
25082	BTB7	OsBTB7	BTB-TYPE E3 UBIQUITIN LIGASE 7	BTB-type E3 ubiquitin ligase 7			10				LOC_Os10g29060.1						
25083	BTB8	OsBTB8	BTB-TYPE E3 UBIQUITIN LIGASE 8	BTB-type E3 ubiquitin ligase 8			11			Os11g0111900	LOC_Os11g02070.1						
25084	BTB9	OsBTB9	BTB-TYPE E3 UBIQUITIN LIGASE 9	BTB-type E3 ubiquitin ligase 9			12			Os12g0111500	LOC_Os12g02030.1						
25085	BTBM1	OsBTBM1	BTB-TYPE E3 UBIQUITIN LIGASE M1	BTB-type E3 ubiquitin ligase M1			1			Os01g0932600	LOC_Os01g70670.2, LOC_Os01g70670.1						
25086	BTBN1	OsBTBN1	BTB-TYPE E3 UBIQUITIN LIGASE N1	BTB-type E3 ubiquitin ligase N1			1			Os01g0780600	LOC_Os01g57230.1						
25087	BTBN10	OsBTBN10	BTB-TYPE E3 UBIQUITIN LIGASE N10	BTB-type E3 ubiquitin ligase N10			3			Os03g0767600	LOC_Os03g55830.1						
25088	BTBN11	OsBTBN11	BTB-TYPE E3 UBIQUITIN LIGASE N11	BTB-type E3 ubiquitin ligase N11			4			Os04g0477000	LOC_Os04g40100.1						
25089	BTBN12	OsBTBN12	BTB-TYPE E3 UBIQUITIN LIGASE N12	BTB-type E3 ubiquitin ligase N12			4			Os04g0636500	LOC_Os04g54400.1						
25090	BTBN13	OsBTBN13	BTB-TYPE E3 UBIQUITIN LIGASE N13	BTB-type E3 ubiquitin ligase N13			4			Os04g0674300	LOC_Os04g57800.2, LOC_Os04g57800.1						
25091	BTBN15	OsBTBN15	BTB-TYPE E3 UBIQUITIN LIGASE N15	BTB-type E3 ubiquitin ligase N15			7			Os07g0546400	LOC_Os07g36230.3, LOC_Os07g36230.1, LOC_Os07g36230.4, LOC_Os07g36230.2						
25092	BTBN16	OsBTBN16	BTB-TYPE E3 UBIQUITIN LIGASE N16	BTB-type E3 ubiquitin ligase N16			7			Os07g0584200	LOC_Os07g39530.1						
25093	BTBN17	OsBTBN17	BTB-TYPE E3 UBIQUITIN LIGASE N17	BTB-type E3 ubiquitin ligase N17			8			Os08g0130600	LOC_Os08g03650.1						
25094	BTBN20	OsBTBN20	BTB-TYPE E3 UBIQUITIN LIGASE N20	BTB-type E3 ubiquitin ligase N20			11			Os11g0118300	LOC_Os11g02610.2, LOC_Os11g02610.1, LOC_Os11g02610.3						
25095	BTBN21	OsBTBN21	BTB-TYPE E3 UBIQUITIN LIGASE N21	BTB-type E3 ubiquitin ligase N21			11			Os11g0118500	LOC_Os11g02620.1						
25096	BTBN22	OsBTBN22	BTB-TYPE E3 UBIQUITIN LIGASE N22	BTB-type E3 ubiquitin ligase N22			12			Os12g0117400	LOC_Os12g02530.3, LOC_Os12g02530.2, LOC_Os12g02530.1						
25097	BTBN23	OsBTBN23	BTB-TYPE E3 UBIQUITIN LIGASE N23	BTB-type E3 ubiquitin ligase N23			12			Os12g0117600	LOC_Os12g02540.1						
25098	BTBN24	OsBTBN24	BTB-TYPE E3 UBIQUITIN LIGASE N24	BTB-type E3 ubiquitin ligase N24			12			Os12g0583500	LOC_Os12g39380.1						
25099	BTBN3	OsBTBN3	BTB-TYPE E3 UBIQUITIN LIGASE N3	BTB-type E3 ubiquitin ligase N3			2		 Tolerance and resistance - Stress tolerance	Os02g0594700	LOC_Os02g38120.1				GO:0009651 - response to salt stress, GO:0016567 - protein ubiquitination	TO:0000429 - salt sensitivity	
25100	BTBN4	OsBTBN4	BTB-TYPE E3 UBIQUITIN LIGASE N4	BTB-type E3 ubiquitin ligase N4			3			Os03g0205700	LOC_Os03g10800.3, LOC_Os03g10800.4, LOC_Os03g10800.1, LOC_Os03g10800.2						
25101	BTBN5	OsBTBN5	BTB-TYPE E3 UBIQUITIN LIGASE N5	BTB-type E3 ubiquitin ligase N5			3			Os03g0206700	LOC_Os03g10880.2, LOC_Os03g10880.1						
25102	BTBN7	OsBTBN7	BTB-TYPE E3 UBIQUITIN LIGASE N7	BTB-type E3 ubiquitin ligase N7			3		 Tolerance and resistance - Stress tolerance	Os03g0609800	LOC_Os03g41350.2, LOC_Os03g41350.1				GO:0016567 - protein ubiquitination, GO:0009651 - response to salt stress	TO:0000429 - salt sensitivity	
25103	BTBN8	OsBTBN8	BTB-TYPE E3 UBIQUITIN LIGASE N8	BTB-type E3 ubiquitin ligase N8			3			Os03g0641300	LOC_Os03g43990.1						
25104	BTBN9	OsBTBN9	BTB-TYPE E3 UBIQUITIN LIGASE N9	BTB-type E3 ubiquitin ligase N9			3			Os03g0738900	LOC_Os03g52880.1						
25105	BTBP1	OsBTBP1	BTB-TYPE E3 UBIQUITIN LIGASE P1	BTB-type E3 ubiquitin ligase P1			3			Os03g0157500	LOC_Os03g06160.1						
25106	BTBZ3	OsBTBZ3	BTB-TYPE E3 UBIQUITIN LIGASE Z3	BTB-type E3 ubiquitin ligase Z3			2			Os02g0596700	LOC_Os02g38320.1						
25107	BTBZ4	OsBTBZ4	BTB-TYPE E3 UBIQUITIN LIGASE Z4	BTB-type E3 ubiquitin ligase Z4			4			Os04g0482300	LOC_Os04g40630.3, LOC_Os04g40630.4, LOC_Os04g40630.1, LOC_Os04g40630.2						
25108	C2-BTB1	OsC2-BTB1	C2-BTB-TYPE E3 UBIQUITIN LIGASE 1	C2-BTB-type E3 ubiquitin ligase 1			7			Os07g0258700	LOC_Os07g15490.1						
25109	C3-BTB1	OsC3-BTB1	C3-BTB-TYPE E3 UBIQUITIN LIGASE 1	C3-BTB-type E3 ubiquitin ligase 1			8			Os08g0103600	LOC_Os08g01320.1, LOC_Os08g01320.2						
25110	C3-BTB2	OsC3-BTB2	C3-BTB-TYPE E3 UBIQUITIN LIGASE 2	C3-BTB-type E3 ubiquitin ligase 2			8			Os08g0495500	LOC_Os08g38700.1						
25111	E1-BTB1	OsE1-BTB1	E1-BTB-TYPE E3 UBIQUITIN LIGASE 1	E1-BTB-type E3 ubiquitin ligase 1			2			Os02g0260700	LOC_Os02g16000.2, LOC_Os02g16000.1						
25112	E1-BTB2	OsE1-BTB2	E1-BTB-TYPE E3 UBIQUITIN LIGASE 2	E1-BTB-type E3 ubiquitin ligase 2			6			Os06g0507400	LOC_Os06g31100.1						
25113	H-BTB1	OsH-BTB1	H-BTB-TYPE E3 UBIQUITIN LIGASE 1	H-BTB-type E3 ubiquitin ligase 1			3			Os03g0769400	LOC_Os03g55950.4, LOC_Os03g55950.1, LOC_Os03g55950.2, LOC_Os03g55950.3						
25114	H-BTB2	OsH-BTB2	H-BTB-TYPE E3 UBIQUITIN LIGASE 2	H-BTB-type E3 ubiquitin ligase 2			4			Os04g0278000	LOC_Os04g20920.1						
25115	H-BTB3	OsH-BTB3	H-BTB-TYPE E3 UBIQUITIN LIGASE 3	H-BTB-type E3 ubiquitin ligase 3			4			Os04g0579700	LOC_Os04g49060.1						
25116	H-BTB4	OsH-BTB4	H-BTB-TYPE E3 UBIQUITIN LIGASE 4	H-BTB-type E3 ubiquitin ligase 4			6			Os06g0129200	LOC_Os06g03840.1						
25117	H-BTB5	OsH-BTB5	H-BTB-TYPE E3 UBIQUITIN LIGASE 5	H-BTB-type E3 ubiquitin ligase 5			7			Os07g0123500	LOC_Os07g03150.3, LOC_Os07g03150.2, LOC_Os07g03150.1						
25118	H-BTB6	OsH-BTB6	H-BTB-TYPE E3 UBIQUITIN LIGASE 6	H-BTB-type E3 ubiquitin ligase 6			7			Os07g0259700	LOC_Os07g15600.1						
25119	H-BTB7	OsH-BTB7	H-BTB-TYPE E3 UBIQUITIN LIGASE 7	H-BTB-type E3 ubiquitin ligase 7			7			Os07g0668800	LOC_Os07g47260.1						
25120	H-BTB8	OsH-BTB8	H-BTB-TYPE E3 UBIQUITIN LIGASE 8	H-BTB-type E3 ubiquitin ligase 8			12			Os12g0188500	LOC_Os12g08720.1						
25121	H-BTB9	OsH-BTB9	H-BTB-TYPE E3 UBIQUITIN LIGASE 9	H-BTB-type E3 ubiquitin ligase 9			12			Os12g0596600	LOC_Os12g40480.2, LOC_Os12g40480.1						
25122	MBTB10	OsMBTB10	M BTB-TYPE E3 UBIQUITIN LIGASE 10	M BTB-type E3 ubiquitin ligase 10			6			Os06g0251200	LOC_Os06g14060.2, LOC_Os06g14060.1						
25123	MBTB16	OsMBTB16	M BTB-TYPE E3 UBIQUITIN LIGASE 16	M BTB-type E3 ubiquitin ligase 16			8				LOC_Os08g03480.1						
25124	MBTB17	OsMBTB17	M BTB-TYPE E3 UBIQUITIN LIGASE 17	M BTB-type E3 ubiquitin ligase 17			8			Os08g0129000	LOC_Os08g03500.1						
25125	MBTB18	OsMBTB18	M BTB-TYPE E3 UBIQUITIN LIGASE 18	M BTB-type E3 ubiquitin ligase 18			8				LOC_Os08g03510.1						
25126	MBTB19	OsMBTB19	M BTB-TYPE E3 UBIQUITIN LIGASE 19	M BTB-type E3 ubiquitin ligase 19			8			Os08g0129300	LOC_Os08g03530.1						
25127	MBTB22	OsMBTB22	M BTB-TYPE E3 UBIQUITIN LIGASE 22	M BTB-type E3 ubiquitin ligase 22			8			Os08g0227100	LOC_Os08g13060.1						
25128	MBTB23	OsMBTB23	M BTB-TYPE E3 UBIQUITIN LIGASE 23	M BTB-type E3 ubiquitin ligase 23			8			Os08g0227200	LOC_Os08g13070.1						
25129	MBTB25	OsMBTB25	M BTB-TYPE E3 UBIQUITIN LIGASE 25	M BTB-type E3 ubiquitin ligase 25			8				LOC_Os08g25240.1						
25130	MBTB26	OsMBTB26	M BTB-TYPE E3 UBIQUITIN LIGASE 26	M BTB-type E3 ubiquitin ligase 26			8			Os08g0406500	LOC_Os08g31420.1						
25131	MBTB28	OsMBTB28	M BTB-TYPE E3 UBIQUITIN LIGASE 28	M BTB-type E3 ubiquitin ligase 28			8				LOC_Os08g31450.1						
25132	MBTB29	OsMBTB29	M BTB-TYPE E3 UBIQUITIN LIGASE 29	M BTB-type E3 ubiquitin ligase 29			8			Os08g0522700	LOC_Os08g41120.1						
25133	MBTB30	OsMBTB30	M BTB-TYPE E3 UBIQUITIN LIGASE 30	M BTB-type E3 ubiquitin ligase 30			8			Os08g0523000	LOC_Os08g41150.1						
25134	MBTB31	OsMBTB31	M BTB-TYPE E3 UBIQUITIN LIGASE 31	M BTB-type E3 ubiquitin ligase 31			8			Os08g0523200	LOC_Os08g41180.1						
25135	MBTB32	OsMBTB32	M BTB-TYPE E3 UBIQUITIN LIGASE 32	M BTB-type E3 ubiquitin ligase 32			8			Os08g0523400	LOC_Os08g41190.1						
25136	MBTB37	OsMBTB37	M BTB-TYPE E3 UBIQUITIN LIGASE 37	M BTB-type E3 ubiquitin ligase 37			10			Os10g0423800	LOC_Os10g28810.1						
25137	MBTB38	OsMBTB38	M BTB-TYPE E3 UBIQUITIN LIGASE 38	M BTB-type E3 ubiquitin ligase 38			10			Os10g0423900	LOC_Os10g28820.1						
25138	MBTB4	OsMBTB4	M BTB-TYPE E3 UBIQUITIN LIGASE 4	M BTB-type E3 ubiquitin ligase 4			4				LOC_Os04g35310.1						
25139	MBTB40	OsMBTB40	M BTB-TYPE E3 UBIQUITIN LIGASE 40	M BTB-type E3 ubiquitin ligase 40			10				LOC_Os10g28870.1						
25140	MBTB42	OsMBTB42	M BTB-TYPE E3 UBIQUITIN LIGASE 42	M BTB-type E3 ubiquitin ligase 42			10				LOC_Os10g28990.1						
25141	MBTB44	OsMBTB44	M BTB-TYPE E3 UBIQUITIN LIGASE 44	M BTB-type E3 ubiquitin ligase 44			10				LOC_Os10g29100.1						
25142	MBTB46	OsMBTB46	M BTB-TYPE E3 UBIQUITIN LIGASE 46	M BTB-type E3 ubiquitin ligase 46			10				LOC_Os10g29150.1						
25143	MBTB49	OsMBTB49	M BTB-TYPE E3 UBIQUITIN LIGASE 49	M BTB-type E3 ubiquitin ligase 49			10				LOC_Os10g29230.1						
25144	MBTB5	OsMBTB5	M BTB-TYPE E3 UBIQUITIN LIGASE 5	M BTB-type E3 ubiquitin ligase 5			4			Os04g0433100	LOC_Os04g35370.1						
25145	MBTB50	OsMBTB50	M BTB-TYPE E3 UBIQUITIN LIGASE 50	M BTB-type E3 ubiquitin ligase 50			10				LOC_Os10g29290.1						
25146	MBTB6	OsMBTB6	M BTB-TYPE E3 UBIQUITIN LIGASE 6	M BTB-type E3 ubiquitin ligase 6			4			Os04g0625500	LOC_Os04g53400.1						
25147	MBTB61	OsMBTB61	M BTB-TYPE E3 UBIQUITIN LIGASE 61	M BTB-type E3 ubiquitin ligase 61			11				LOC_Os11g24550.1						
25148	MBTB62	OsMBTB62	M BTB-TYPE E3 UBIQUITIN LIGASE 62	M BTB-type E3 ubiquitin ligase 62			11				LOC_Os11g40220.1						
25149	MBTB63	OsMBTB63	M BTB-TYPE E3 UBIQUITIN LIGASE 63	M BTB-type E3 ubiquitin ligase 63			11				LOC_Os11g40490.1						
25150	MBTB65	OsMBTB65	M BTB-TYPE E3 UBIQUITIN LIGASE 65	M BTB-type E3 ubiquitin ligase 65			11			Os11g0631100	LOC_Os11g41300.1						
25151	MBTB66	OsMBTB66	M BTB-TYPE E3 UBIQUITIN LIGASE 66	M BTB-type E3 ubiquitin ligase 66			11				LOC_Os11g41310.1						
25152	MBTB67	OsMBTB67	M BTB-TYPE E3 UBIQUITIN LIGASE 67	M BTB-type E3 ubiquitin ligase 67			11				LOC_Os11g41350.1						
25153	MBTB68	OsMBTB68	M BTB-TYPE E3 UBIQUITIN LIGASE 68	M BTB-type E3 ubiquitin ligase 68			11				LOC_Os11g45560.1						
25154	MRBTB1	OsMrBTB1	MR BTB-TYPE E3 UBIQUITIN LIGASE 1	Mr BTB-type E3 ubiquitin ligase 1			4			Os04g0433000	LOC_Os04g35340.1						
25155	MRBTB2	OsMrBTB2	MR BTB-TYPE E3 UBIQUITIN LIGASE 2	Mr BTB-type E3 ubiquitin ligase 2			4			Os04g0625400	LOC_Os04g53390.1						
25156	MRBTB3	OsMrBTB3	MR BTB-TYPE E3 UBIQUITIN LIGASE 3	Mr BTB-type E3 ubiquitin ligase 3			5				LOC_Os05g44540.1						
25157	MRBTB4	OsMrBTB4	MR BTB-TYPE E3 UBIQUITIN LIGASE 4	Mr BTB-type E3 ubiquitin ligase 4			8			Os08g0523850	LOC_Os08g41240.1						
25158	MRBTB5	OsMrBTB5	MR BTB-TYPE E3 UBIQUITIN LIGASE 5	Mr BTB-type E3 ubiquitin ligase 5			11			Os11g0630900	LOC_Os11g41290.1						
25159	DWD74	OsDWD74	DWD MOTIF- CONTAINING PROTEIN 74	DWD motif- containing protein 74			7			Os07g0603200	LOC_Os07g41190.1						
25160	FBD17	OsFBD17	F-BOX-TYPE E3 UBIQUITIN LIGASE D17	F-box-type E3 ubiquitin ligase D17			12				LOC_Os12g37130.1						
25161	FBD4	OsFBD4	F-BOX-TYPE E3 UBIQUITIN LIGASE D4	F-box-type E3 ubiquitin ligase D4			1				LOC_Os01g41280.1						
25162	FBDUF14	OsFBDUF14	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF14	F-box-type E3 ubiquitin ligase FBDUF14			2				LOC_Os02g54330.1						
25163	FBDUF25	OsFBDUF25	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF25	F-box-type E3 ubiquitin ligase FBDUF25			5				LOC_Os05g40610.1						
25164	FBDUF27	OsFBDUF27	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF27	F-box-type E3 ubiquitin ligase FBDUF27			5				LOC_Os05g46060.1						
25165	FBDUF28	OsFBDUF28	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF28	F-box-type E3 ubiquitin ligase FBDUF28			5				LOC_Os05g46150.1						
25166	FBDUF29	OsFBDUF29	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF29	F-box-type E3 ubiquitin ligase FBDUF29			5				LOC_Os05g46160.1						
25167	FBDUF31	OsFBDUF31	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF31	F-box-type E3 ubiquitin ligase FBDUF31			6				LOC_Os06g05600.1						
25168	FBDUF33	OsFBDUF33	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF33	F-box-type E3 ubiquitin ligase FBDUF33			6				LOC_Os06g05620.1						
25169	FBDUF47	OsFBDUF47	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF47	F-box-type E3 ubiquitin ligase FBDUF47			9			Os09g0548034	LOC_Os09g37590.1						
25170	FBDUF6	OsFBDUF6	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF6	F-box-type E3 ubiquitin ligase FBDUF6			1				LOC_Os01g56710.1						
25171	FBDUF7	OsFBDUF7	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF7	F-box-type E3 ubiquitin ligase FBDUF7			1				LOC_Os01g56740.1						
25172	FBDUF9	OsFBDUF9	F-BOX-TYPE E3 UBIQUITIN LIGASE FBDUF9	F-box-type E3 ubiquitin ligase FBDUF9			1				LOC_Os01g71430.1						
25173	FBL11	OsFBL11	F-BOX-TYPE E3 UBIQUITIN LIGASE L11	F-box-type E3 ubiquitin ligase L11			4				LOC_Os04g19750.1						
25174	FBL18	OsFBL18	F-BOX-TYPE E3 UBIQUITIN LIGASE L18	F-box-type E3 ubiquitin ligase L18			4				LOC_Os04g40800.1						
25175	FBO19	OsFBO19	F-BOX-TYPE E3 UBIQUITIN LIGASE O19	F-box-type E3 ubiquitin ligase O19			7				LOC_Os07g36360.1						
25176	FBT8	OsFBT8	F-BOX-TYPE E3 UBIQUITIN LIGASE T8	F-box-type E3 ubiquitin ligase T8			5				LOC_Os05g40520.1						
25177	FBX100	OsFBX100	F-BOX-TYPE E3 UBIQUITIN LIGASE X100	F-box-type E3 ubiquitin ligase X100			3				LOC_Os03g46120.1						
25178	FBX102	OsFBX102	F-BOX-TYPE E3 UBIQUITIN LIGASE X102	F-box-type E3 ubiquitin ligase X102			3				LOC_Os03g46500.1						
25179	FBX107	OsFBX107	F-BOX-TYPE E3 UBIQUITIN LIGASE X107	F-box-type E3 ubiquitin ligase X107			3				LOC_Os03g47420.1						
25180	FBX115	OsFBX115	F-BOX-TYPE E3 UBIQUITIN LIGASE X115	F-box-type E3 ubiquitin ligase X115			4				LOC_Os04g08460.1						
25181	FBX116	OsFBX116	F-BOX-TYPE E3 UBIQUITIN LIGASE X116	F-box-type E3 ubiquitin ligase X116			4				LOC_Os04g08470.1						
25182	FBX122	OsFBX122	F-BOX-TYPE E3 UBIQUITIN LIGASE X122	F-box-type E3 ubiquitin ligase X122			4				LOC_Os04g12990.1						
25183	FBX166	OsFBX166	F-BOX-TYPE E3 UBIQUITIN LIGASE X166	F-box-type E3 ubiquitin ligase X166			5				LOC_Os05g27550.1						
25184	FBX189	OsFBX189	F-BOX-TYPE E3 UBIQUITIN LIGASE X189	F-box-type E3 ubiquitin ligase X189			6				LOC_Os06g07430.1						
25185	FBX199	OsFBX199	F-BOX-TYPE E3 UBIQUITIN LIGASE X199	F-box-type E3 ubiquitin ligase X199			6				LOC_Os06g40220.1						
25186	FBX200	OsFBX200	F-BOX-TYPE E3 UBIQUITIN LIGASE X200	F-box-type E3 ubiquitin ligase X200			6				LOC_Os06g41520.1						
25187	FBX210	OsFBX210	F-BOX-TYPE E3 UBIQUITIN LIGASE X210	F-box-type E3 ubiquitin ligase X210			7				LOC_Os07g02930.1						
25188	FBX218	OsFBX218	F-BOX-TYPE E3 UBIQUITIN LIGASE X218	F-box-type E3 ubiquitin ligase X218			7				LOC_Os07g08570.1						
25189	FBX236	OsFBX236	F-BOX-TYPE E3 UBIQUITIN LIGASE X236	F-box-type E3 ubiquitin ligase X236			7				LOC_Os07g27030.1						
25190	FBX239	OsFBX239	F-BOX-TYPE E3 UBIQUITIN LIGASE X239	F-box-type E3 ubiquitin ligase X239			7				LOC_Os07g35070.1						
25191	FBX244	OsFBX244	F-BOX-TYPE E3 UBIQUITIN LIGASE X244	F-box-type E3 ubiquitin ligase X244			7				LOC_Os07g36320.1						
25192	FBX25	OsFBX25	F-BOX-TYPE E3 UBIQUITIN LIGASE X25	F-box-type E3 ubiquitin ligase X25			1				LOC_Os01g55210.1						
25193	FBX256	OsFBX256	F-BOX-TYPE E3 UBIQUITIN LIGASE X256	F-box-type E3 ubiquitin ligase X256			7				LOC_Os07g37080.1						
25194	FBX268	OsFBX268	F-BOX-TYPE E3 UBIQUITIN LIGASE X268	F-box-type E3 ubiquitin ligase X268			8				LOC_Os08g09480.1						
25195	FBX279	OsFBX279	F-BOX-TYPE E3 UBIQUITIN LIGASE X279	F-box-type E3 ubiquitin ligase X279			8				LOC_Os08g16630.1						
25196	FBX285	OsFBX285	F-BOX-TYPE E3 UBIQUITIN LIGASE X285	F-box-type E3 ubiquitin ligase X285			8				LOC_Os08g20492.1						
25197	FBX287	OsFBX287	F-BOX-TYPE E3 UBIQUITIN LIGASE X287	F-box-type E3 ubiquitin ligase X287			8				LOC_Os08g24370.1						
25198	FBX305	OsFBX305	F-BOX-TYPE E3 UBIQUITIN LIGASE X305	F-box-type E3 ubiquitin ligase X305			8				LOC_Os08g43220.1						
25199	FBX321	OsFBX321	F-BOX-TYPE E3 UBIQUITIN LIGASE X321	F-box-type E3 ubiquitin ligase X321			9				LOC_Os09g17530.1						
25200	FBX335	OsFBX335	F-BOX-TYPE E3 UBIQUITIN LIGASE X335	F-box-type E3 ubiquitin ligase X335			9				LOC_Os09g32860.1						
25201	FBX374	OsFBX374	F-BOX-TYPE E3 UBIQUITIN LIGASE X374	F-box-type E3 ubiquitin ligase X374			10				LOC_Os10g05590.1						
25202	FBX393	OsFBX393	F-BOX-TYPE E3 UBIQUITIN LIGASE X393	F-box-type E3 ubiquitin ligase X393			10				LOC_Os10g41829.1						
25203	FBX403	OsFBX403	F-BOX-TYPE E3 UBIQUITIN LIGASE X403	F-box-type E3 ubiquitin ligase X403			11				LOC_Os11g09510.1						
25204	FBX404	OsFBX404	F-BOX-TYPE E3 UBIQUITIN LIGASE X404	F-box-type E3 ubiquitin ligase X404			11				LOC_Os11g09590.1						
25205	FBX41	OsFBX41	F-BOX-TYPE E3 UBIQUITIN LIGASE X41	F-box-type E3 ubiquitin ligase X41			2				LOC_Os02g16760.1						
25206	FBX415	OsFBX415	F-BOX-TYPE E3 UBIQUITIN LIGASE X415	F-box-type E3 ubiquitin ligase X415			11				LOC_Os11g10300.1						
25207	FBX42	OsFBX42	F-BOX-TYPE E3 UBIQUITIN LIGASE X42	F-box-type E3 ubiquitin ligase X42			2				LOC_Os02g17180.1						
25208	FBX428	OsFBX428	F-BOX-TYPE E3 UBIQUITIN LIGASE X428	F-box-type E3 ubiquitin ligase X428			11				LOC_Os11g41570.1						
25209	FBX442	OsFBX442	F-BOX-TYPE E3 UBIQUITIN LIGASE X442	F-box-type E3 ubiquitin ligase X442			12				LOC_Os12g27760.1						
25210	FBX465	OsFBX465	F-BOX-TYPE E3 UBIQUITIN LIGASE X465	F-box-type E3 ubiquitin ligase X465			12				LOC_Os12g43770.1						
25211	FBX467	OsFBX467	F-BOX-TYPE E3 UBIQUITIN LIGASE X467	F-box-type E3 ubiquitin ligase X467			2				LOC_Os02g21230.1						
25212	FBX471	OsFBX471	F-BOX-TYPE E3 UBIQUITIN LIGASE X471	F-box-type E3 ubiquitin ligase X471			4				LOC_Os04g30830.1						
25213	FBX474	OsFBX474	F-BOX-TYPE E3 UBIQUITIN LIGASE X474	F-box-type E3 ubiquitin ligase X474			5				LOC_Os05g40500.1						
25214	FBX503	OsFBX503	F-BOX-TYPE E3 UBIQUITIN LIGASE X503	F-box-type E3 ubiquitin ligase X503			7				LOC_Os07g17570.1						
25215	FBX56	OsFBX56	F-BOX-TYPE E3 UBIQUITIN LIGASE X56	F-box-type E3 ubiquitin ligase X56			2				LOC_Os02g38720.1						
25216	FBX71	OsFBX71	F-BOX-TYPE E3 UBIQUITIN LIGASE X71	F-box-type E3 ubiquitin ligase X71			2				LOC_Os02g57860.1						
25217	FBX8	OsFBX8	F-BOX-TYPE E3 UBIQUITIN LIGASE X8	F-box-type E3 ubiquitin ligase X8			1				LOC_Os01g28520.1						
25218	FBX85	OsFBX85	F-BOX-TYPE E3 UBIQUITIN LIGASE X85	F-box-type E3 ubiquitin ligase X85			3				LOC_Os03g24200.1						
25219	UPL3	OsHECT1, HECT1, OsUPL3	UBIQUITIN PROTEIN LIGASE 3	HECT-type E3 ubiquitin ligase 1, Ubiquitin Protein Ligase 3	UBIQUITIN PROTEIN LIGASE 3		2	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os02g0101700	LOC_Os02g01170.1				GO:0000209 - protein polyubiquitination, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process		
25221	HECT3	OsHECT3	HECT-TYPE E3 UBIQUITIN LIGASE 3	HECT-type E3 ubiquitin ligase 3			5			Os05g0122400	LOC_Os05g03100.1						
25222	UPL6	OsHECT4, HECT4, OsUPL6	UBIQUITIN PROTEIN LIGASE 6	HECT-type E3 ubiquitin ligase 4, Ubiquitin Protein Ligase 6	UBIQUITIN PROTEIN LIGASE 6		5	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os05g0159000	LOC_Os05g06690.3, LOC_Os05g06690.1, LOC_Os05g06690.2				GO:0000209 - protein polyubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
25223	UPL4	OsHECT5, HECT5, OsUPL4	UBIQUITIN PROTEIN LIGASE 4	HECT-type E3 ubiquitin ligase 5, Ubiquitin Protein Ligase 4	UBIQUITIN PROTEIN LIGASE 4		5	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os05g0463900	LOC_Os05g38830.2, LOC_Os05g38830.1				GO:0000209 - protein polyubiquitination, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0006511 - ubiquitin-dependent protein catabolic process		
25224	UPL1	OsHECT6, HECT6, OsUPL1	UBIQUITIN PROTEIN LIGASE 1	HECT-type E3 ubiquitin ligase 6, Ubiquitin Protein Ligase 1	UBIQUITIN PROTEIN LIGASE 1		9		 Biochemical character	Os09g0252700/Os09g0252800	LOC_Os09g07900.1				GO:0000209 - protein polyubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0016567 - protein ubiquitination, GO:0005737 - cytoplasm, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
25225	UPL5	OsHECT7, HECT7, OsUPL5	UBIQUITIN PROTEIN LIGASE 5	HECT-type E3 ubiquitin ligase 7, Ubiquitin Protein Ligase 5	UBIQUITIN PROTEIN LIGASE 5		9	GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os09g0484300	LOC_Os09g31090.2				GO:0000209 - protein polyubiquitination, GO:0016567 - protein ubiquitination, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005737 - cytoplasm, GO:0004842 - ubiquitin-protein ligase activity		
25226	PUB41	OsPUB41	U-BOX-TYPE E3 UBIQUITIN LIGASE 41	U-box-type E3 ubiquitin ligase 41			3			Os03g0240600	LOC_Os03g13740.1						
25227	PUB42	OsPUB42	U-BOX-TYPE E3 UBIQUITIN LIGASE 42	U-box-type E3 ubiquitin ligase 42			10				LOC_Os10g03440.1						
25228	RING10	OsRING10	RING-TYPE E3 UBIQUITIN LIGASE 10	RING-type E3 ubiquitin ligase 10			7			Os07g0484300	LOC_Os07g30100.1, LOC_Os07g30100.2						
25229	RING100	OsRING100	RING-TYPE E3 UBIQUITIN LIGASE 100	RING-type E3 ubiquitin ligase 100			2			Os02g0735900	LOC_Os02g50290.1						
25230	RING101	OsRING101	RING-TYPE E3 UBIQUITIN LIGASE 101	RING-type E3 ubiquitin ligase 101			9			Os09g0344900	LOC_Os09g17610.1						
25231	RING104	OsRING104, OsvWA7, vWA7	RING-TYPE E3 UBIQUITIN LIGASE 104	RING-type E3 ubiquitin ligase 104, von Willebrand factor A7	RING-TYPE E3 UBIQUITIN LIGASE 104		2	GO:1903842: response to arsenite ion.	 Tolerance and resistance - Stress tolerance	Os02g0806700	LOC_Os02g56280.1				GO:0010288 - response to lead ion, GO:0043170 - macromolecule metabolic process, GO:0044238 - primary metabolic process		PO:0007632 - seed maturation stage 
25232	RING106	OsRING106	RING-TYPE E3 UBIQUITIN LIGASE 106	RING-type E3 ubiquitin ligase 106			6			Os06g0155200	LOC_Os06g06150.1						
25233	RING107	OsRING107	RING-TYPE E3 UBIQUITIN LIGASE 107	RING-type E3 ubiquitin ligase 107			2			Os02g0645000	LOC_Os02g43120.1						
25234	RING108	OsRING108	RING-TYPE E3 UBIQUITIN LIGASE 108	RING-type E3 ubiquitin ligase 108			1			Os01g0311400	LOC_Os01g20930.1						
25235	RING109	OsRING109	RING-TYPE E3 UBIQUITIN LIGASE 109	RING-type E3 ubiquitin ligase 109			12	a C3HC4-type domain containing protein.new C3HC4-type zinc finger protein-encoding gene. GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Stress tolerance	Os12g0432600	LOC_Os12g24490.1				GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0009631 - cold acclimation, GO:0009409 - response to cold, GO:0016020 - membrane	TO:0000303 - cold tolerance	
25236	RING11	OsRING11	RING-TYPE E3 UBIQUITIN LIGASE 11	RING-type E3 ubiquitin ligase 11			6				LOC_Os06g14650.1						
25237	RING110	OsRING110	RING-TYPE E3 UBIQUITIN LIGASE 110	RING-type E3 ubiquitin ligase 110			3			Os03g0254900	LOC_Os03g15000.1, LOC_Os03g15000.2						
25238	RING111	OsRING111	RING-TYPE E3 UBIQUITIN LIGASE 111	RING-type E3 ubiquitin ligase 111			10			Os10g0204100	LOC_Os10g13670.1						
25239	RING112	OsRING112	RING-TYPE E3 UBIQUITIN LIGASE 112	RING-type E3 ubiquitin ligase 112			1			Os01g0374900	LOC_Os01g27720.1						
25240	RING113	OsRING113	RING-TYPE E3 UBIQUITIN LIGASE 113	RING-type E3 ubiquitin ligase 113			3			Os03g0380700	LOC_Os03g26370.1						
25241	RING115	OsRING115	RING-TYPE E3 UBIQUITIN LIGASE 115	RING-type E3 ubiquitin ligase 115			1			Os01g0568000	LOC_Os01g38720.1						
25242	RING116	OsRING116	RING-TYPE E3 UBIQUITIN LIGASE 116	RING-type E3 ubiquitin ligase 116			1			Os01g0567800	LOC_Os01g38700.1						
25243	RING117	OsRING117	RING-TYPE E3 UBIQUITIN LIGASE 117	RING-type E3 ubiquitin ligase 117			1			Os01g0567900	LOC_Os01g38710.1						
25244	RING118	OsRING118	RING-TYPE E3 UBIQUITIN LIGASE 118	RING-type E3 ubiquitin ligase 118			7				LOC_Os07g43840.1						
25245	RING119	OsRING119	RING-TYPE E3 UBIQUITIN LIGASE 119	RING-type E3 ubiquitin ligase 119			7			Os07g0632100	LOC_Os07g43830.1						
25246	RING120	OsRING120	RING-TYPE E3 UBIQUITIN LIGASE 120	RING-type E3 ubiquitin ligase 120			7			Os07g0632300	LOC_Os07g43850.1						
25247	RING121	OsRING121	RING-TYPE E3 UBIQUITIN LIGASE 121	RING-type E3 ubiquitin ligase 121			1			Os01g0535100	LOC_Os01g35100.1						
25248	RING122	OsRING122	RING-TYPE E3 UBIQUITIN LIGASE 122	RING-type E3 ubiquitin ligase 122			3				LOC_Os03g44642.1						
25249	RING124	OsRING124	RING-TYPE E3 UBIQUITIN LIGASE 124	RING-type E3 ubiquitin ligase 124			6			Os06g0144100	LOC_Os06g05200.1						
25250	RING125	OsRING125	RING-TYPE E3 UBIQUITIN LIGASE 125	RING-type E3 ubiquitin ligase 125			8			Os08g0410800	LOC_Os08g31720.1						
25251	RING126	OsRING126	RING-TYPE E3 UBIQUITIN LIGASE 126	RING-type E3 ubiquitin ligase 126			7			Os07g0631200	LOC_Os07g43740.1						
25252	RING127	OsRING127	RING-TYPE E3 UBIQUITIN LIGASE 127	RING-type E3 ubiquitin ligase 127			1			Os01g0567700	LOC_Os01g38690.1						
25253	RING13	OsRING13	RING-TYPE E3 UBIQUITIN LIGASE 13	RING-type E3 ubiquitin ligase 13			1			Os01g0124900	LOC_Os01g03400.1, LOC_Os01g03410.1						
25254	RING132	OsRING132	RING-TYPE E3 UBIQUITIN LIGASE 132	RING-type E3 ubiquitin ligase 132			1			Os01g0568500	LOC_Os01g38760.1						
25255	RING137	OsRING137	RING-TYPE E3 UBIQUITIN LIGASE 137	RING-type E3 ubiquitin ligase 137			8			Os08g0384900	LOC_Os08g29590.1						
25256	RING138	OsRING138, OsvWA24, vWA24	RING-TYPE E3 UBIQUITIN LIGASE 138	RING-type E3 ubiquitin ligase 138, von Willebrand factor A24	RING-TYPE E3 UBIQUITIN LIGASE 138		8			Os08g0126100	LOC_Os08g03270.1				GO:0043170 - macromolecule metabolic process, GO:0044238 - primary metabolic process		PO:0009089 - endosperm 
25257	RING139	OsRING139	RING-TYPE E3 UBIQUITIN LIGASE 139	RING-type E3 ubiquitin ligase 139			1			Os01g0633300	LOC_Os01g44240.1						
25258	RING140	OsRING140	RING-TYPE E3 UBIQUITIN LIGASE 140	RING-type E3 ubiquitin ligase 140			2				LOC_Os02g49710.1						
25259	RING141	OsRING141	RING-TYPE E3 UBIQUITIN LIGASE 141	RING-type E3 ubiquitin ligase 141			6		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0271600	LOC_Os06g16060.1				GO:0031667 - response to nutrient levels, GO:0016567 - protein ubiquitination, GO:0016020 - membrane, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation	TO:0000102 - phosphorus sensitivity	
25260	RING142	OsRING142	RING-TYPE E3 UBIQUITIN LIGASE 142	RING-type E3 ubiquitin ligase 142			8			Os08g0464400	LOC_Os08g36170.1						
25261	RING143	OsRING143	RING-TYPE E3 UBIQUITIN LIGASE 143	RING-type E3 ubiquitin ligase 143			9			Os09g0446275	LOC_Os09g27380.1						
25262	RING147	OsRING147	RING-TYPE E3 UBIQUITIN LIGASE 147	RING-type E3 ubiquitin ligase 147			9			Os09g0504700	LOC_Os09g32690.1, LOC_Os09g32690.2, LOC_Os09g32690.3						
25263	RING148	OsRING148	RING-TYPE E3 UBIQUITIN LIGASE 148	RING-type E3 ubiquitin ligase 148			3			Os03g0177300	LOC_Os03g08000.1						
25264	RING153	OsRING153	RING-TYPE E3 UBIQUITIN LIGASE 153	RING-type E3 ubiquitin ligase 153			2			Os02g0572300	LOC_Os02g36320.1						
25265	RING156	OsRING156	RING-TYPE E3 UBIQUITIN LIGASE 156	RING-type E3 ubiquitin ligase 156			12			Os12g0118700	LOC_Os12g02620.1						
25266	RING16	OsRING16	RING-TYPE E3 UBIQUITIN LIGASE 16	RING-type E3 ubiquitin ligase 16			6			Os06g0537600	LOC_Os06g34650.1						
25267	RING162	OsRING162	RING-TYPE E3 UBIQUITIN LIGASE 162	RING-type E3 ubiquitin ligase 162			1			Os01g0731800	LOC_Os01g53130.1, LOC_Os01g53130.2						
25268	RING167	OsRING167	RING-TYPE E3 UBIQUITIN LIGASE 167	RING-type E3 ubiquitin ligase 167			2			Os02g0524550	LOC_Os02g32420.1						
25269	RING168	OsRING168	RING-TYPE E3 UBIQUITIN LIGASE 168	RING-type E3 ubiquitin ligase 168			4			Os04g0402500	LOC_Os04g32980.1						
25270	RING170	OsRING170	RING-TYPE E3 UBIQUITIN LIGASE 170	RING-type E3 ubiquitin ligase 170			1			Os01g0917900	LOC_Os01g68900.1						
25271	RING171	OsRING171	RING-TYPE E3 UBIQUITIN LIGASE 171	RING-type E3 ubiquitin ligase 171			1			Os01g0796700	LOC_Os01g58400.2, LOC_Os01g58400.1						
25272	RING173	OsRING173	RING-TYPE E3 UBIQUITIN LIGASE 173	RING-type E3 ubiquitin ligase 173			3			Os03g0788100	LOC_Os03g57410.1						
25273	RING174	OsRING174	RING-TYPE E3 UBIQUITIN LIGASE 174	RING-type E3 ubiquitin ligase 174			7			Os07g0159600	LOC_Os07g06560.1						
25274	RING178	OsRING178	RING-TYPE E3 UBIQUITIN LIGASE 178	RING-type E3 ubiquitin ligase 178			4			Os04g0382700	LOC_Os04g31390.1						
25275	RING18	OsRING18	RING-TYPE E3 UBIQUITIN LIGASE 18	RING-type E3 ubiquitin ligase 18			1		 Tolerance and resistance - Stress tolerance	Os01g0159300	LOC_Os01g06590.2, LOC_Os01g06590.1, LOC_Os01g06590.3				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
25276	RING181	OsRING181	RING-TYPE E3 UBIQUITIN LIGASE 181	RING-type E3 ubiquitin ligase 181			1			Os01g0844700	LOC_Os01g62640.1						
25277	RING182	OsRING182, OsvWA31, vWA31	RING-TYPE E3 UBIQUITIN LIGASE 182	RING-type E3 ubiquitin ligase 182, von Willebrand factor A31	RING-TYPE E3 UBIQUITIN LIGASE 182		10	LOC_Os10g32760 = OsRING182 (LOC_Os10g32750 = OsRING416) in Wang et al. 2022. 	 Tolerance and resistance - Disease resistance	Os10g0464800	LOC_Os10g32760.1				GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0044238 - primary metabolic process, GO:0043170 - macromolecule metabolic process	TO:0000255 - sheath blight disease resistance	
25278	RING183	OsRING183	RING-TYPE E3 UBIQUITIN LIGASE 183	RING-type E3 ubiquitin ligase 183			10			Os10g0565500	LOC_Os10g41580.1						
25279	RING184	OsRING184	RING-TYPE E3 UBIQUITIN LIGASE 184	RING-type E3 ubiquitin ligase 184			1			Os01g0977600	LOC_Os01g74610.1						
25280	RING187	OsRING187	RING-TYPE E3 UBIQUITIN LIGASE 187	RING-type E3 ubiquitin ligase 187			6			Os06g0534900	LOC_Os06g34400.1						
25281	RING188	OsRING188	RING-TYPE E3 UBIQUITIN LIGASE 188	RING-type E3 ubiquitin ligase 188			12				LOC_Os12g24530.1						
25282	RING189	OsRING189	RING-TYPE E3 UBIQUITIN LIGASE 189	RING-type E3 ubiquitin ligase 189			1			Os01g0866000	LOC_Os01g64620.1						
25283	RING19	OsRING19	RING-TYPE E3 UBIQUITIN LIGASE 19	RING-type E3 ubiquitin ligase 19			11			Os11g0574200	LOC_Os11g36560.1						
25284	RING190	OsRING190	RING-TYPE E3 UBIQUITIN LIGASE 190	RING-type E3 ubiquitin ligase 190			3				LOC_Os03g22110.1						
25285	RING191	OsRING191	RING-TYPE E3 UBIQUITIN LIGASE 191	RING-type E3 ubiquitin ligase 191			6			Os06g0666500	LOC_Os06g45580.1						
25286	RING192	OsRING192	RING-TYPE E3 UBIQUITIN LIGASE 192	RING-type E3 ubiquitin ligase 192			4			Os04g0419550	LOC_Os04g34230.1						
25287	RING193	OsRING193	RING-TYPE E3 UBIQUITIN LIGASE 193	RING-type E3 ubiquitin ligase 193			5			Os05g0439000	LOC_Os05g36310.1						
25288	RING194	OsRING194	RING-TYPE E3 UBIQUITIN LIGASE 194	RING-type E3 ubiquitin ligase 194			2			Os02g0541500	LOC_Os02g33720.1						
25289	RING195	OsRING195	RING-TYPE E3 UBIQUITIN LIGASE 195	RING-type E3 ubiquitin ligase 195			6			Os06g0536466	LOC_Os06g34560.1						
25290	RING196	OsRING196	RING-TYPE E3 UBIQUITIN LIGASE 196	RING-type E3 ubiquitin ligase 196			6			Os06g0536100	LOC_Os06g34530.1						
25291	RING197	OsRING197	RING-TYPE E3 UBIQUITIN LIGASE 197	RING-type E3 ubiquitin ligase 197			6			Os06g0540200	LOC_Os06g34880.1						
25292	RING199	OsRING199	RING-TYPE E3 UBIQUITIN LIGASE 199	RING-type E3 ubiquitin ligase 199			11			Os11g0142600	LOC_Os11g04680.1						
25293	RING20	OsRING20	RING-TYPE E3 UBIQUITIN LIGASE 20	RING-type E3 ubiquitin ligase 20			5			Os05g0163400	LOC_Os05g07070.5, LOC_Os05g07070.8, LOC_Os05g07070.1, LOC_Os05g07070.2, LOC_Os05g07070.3, LOC_Os05g07070.4, LOC_Os05g07070.7						
25294	RING201	OsRING201	RING-TYPE E3 UBIQUITIN LIGASE 201	RING-type E3 ubiquitin ligase 201			12			Os12g0134800	LOC_Os12g04090.1						
25295	RING202	OsRING202	RING-TYPE E3 UBIQUITIN LIGASE 202	RING-type E3 ubiquitin ligase 202			11			Os11g0137666	LOC_Os11g04280.1						
25296	RING203	OsRING203	RING-TYPE E3 UBIQUITIN LIGASE 203	RING-type E3 ubiquitin ligase 203			11			Os11g0138275	LOC_Os11g04281.1						
25297	RING204	OsRING204	RING-TYPE E3 UBIQUITIN LIGASE 204	RING-type E3 ubiquitin ligase 204			1			Os01g0905700	LOC_Os01g67850.1						
25298	RING207	OsRING207	RING-TYPE E3 UBIQUITIN LIGASE 207	RING-type E3 ubiquitin ligase 207			10			Os10g0500300	LOC_Os10g35670.1						
25299	RING208	OsRING208	RING-TYPE E3 UBIQUITIN LIGASE 208	RING-type E3 ubiquitin ligase 208			8			Os08g0487500	LOC_Os08g38060.1						
25300	RING209	OsRING209, OsvWA29, vWA29	RING-TYPE E3 UBIQUITIN LIGASE 209	RING-type E3 ubiquitin ligase 209, von Willebrand factor A29	RING-TYPE E3 UBIQUITIN LIGASE 209		10			Os10g0464500	LOC_Os10g32740.1				GO:0043170 - macromolecule metabolic process, GO:0044238 - primary metabolic process		
25301	RING21	OsRING21	RING-TYPE E3 UBIQUITIN LIGASE 21	RING-type E3 ubiquitin ligase 21			3			Os03g0380100	LOC_Os03g26300.1						
25302	RING211	OsRING211	RING-TYPE E3 UBIQUITIN LIGASE 211	RING-type E3 ubiquitin ligase 211			11			Os11g0149500	LOC_Os11g05200.1						
25303	RING212	OsRING212, OsvWA38, vWA38	RING-TYPE E3 UBIQUITIN LIGASE 212	RING-type E3 ubiquitin ligase 212, von Willebrand factor A38	RING-TYPE E3 UBIQUITIN LIGASE 212		12			Os12g0203500	LOC_Os12g10250.1				GO:0044238 - primary metabolic process, GO:0043170 - macromolecule metabolic process		
25304	RING216	OsRING216	RING-TYPE E3 UBIQUITIN LIGASE 216	RING-type E3 ubiquitin ligase 216			12				LOC_Os12g40460.1						
25305	RING22	OsRING22	RING-TYPE E3 UBIQUITIN LIGASE 22	RING-type E3 ubiquitin ligase 22			9			Os09g0371700	LOC_Os09g20550.1						
25306	RING220	OsRING220	RING-TYPE E3 UBIQUITIN LIGASE 220	RING-type E3 ubiquitin ligase 220			3			Os03g0263800	LOC_Os03g15730.2, LOC_Os03g15730.1						
25307	RING221	OsRING221	RING-TYPE E3 UBIQUITIN LIGASE 221	RING-type E3 ubiquitin ligase 221			3			Os03g0275300	LOC_Os03g16780.1						
25308	RING224	OsRING224	RING-TYPE E3 UBIQUITIN LIGASE 224	RING-type E3 ubiquitin ligase 224			2			Os02g0248440	LOC_Os02g15060.1						
25309	RING225	OsRING225	RING-TYPE E3 UBIQUITIN LIGASE 225	RING-type E3 ubiquitin ligase 225			2			Os02g0130300	LOC_Os02g03760.1, LOC_Os02g03760.2						
25310	RING226	OsRING226	RING-TYPE E3 UBIQUITIN LIGASE 226	RING-type E3 ubiquitin ligase 226			4			Os04g0487800	LOC_Os04g41080.1						
25311	RING227	OsRING227	RING-TYPE E3 UBIQUITIN LIGASE 227	RING-type E3 ubiquitin ligase 227			11			Os11g0542100	LOC_Os11g34020.1						
25312	RING228	OsRING228	RING-TYPE E3 UBIQUITIN LIGASE 228	RING-type E3 ubiquitin ligase 228			11			Os11g0543100	LOC_Os11g34080.1						
25313	RING23	OsRING23	RING-TYPE E3 UBIQUITIN LIGASE 23	RING-type E3 ubiquitin ligase 23			11			Os11g0114000	LOC_Os11g02260.1						
25314	RING233	OsRING233	RING-TYPE E3 UBIQUITIN LIGASE 233	RING-type E3 ubiquitin ligase 233			2			Os02g0621500	LOC_Os02g40810.1						
25315	RING234	OsRING234	RING-TYPE E3 UBIQUITIN LIGASE 234	RING-type E3 ubiquitin ligase 234			2			Os02g0165000	LOC_Os02g06920.1, LOC_Os02g06920.2						
25316	RING236	OsRING236	RING-TYPE E3 UBIQUITIN LIGASE 236	RING-type E3 ubiquitin ligase 236			2			Os02g0178600	LOC_Os02g08200.1						
25317	RING237	OsRING237	RING-TYPE E3 UBIQUITIN LIGASE 237	RING-type E3 ubiquitin ligase 237			9			Os09g0535500	LOC_Os09g36500.1						
25318	RING238	OsRING238	RING-TYPE E3 UBIQUITIN LIGASE 238	RING-type E3 ubiquitin ligase 238			10			Os10g0438800	LOC_Os10g30310.1						
25319	RING24	OsRING24	RING-TYPE E3 UBIQUITIN LIGASE 24	RING-type E3 ubiquitin ligase 24			12			Os12g0113800	LOC_Os12g02220.1						
25320	RING241	OsRING241	RING-TYPE E3 UBIQUITIN LIGASE 241	RING-type E3 ubiquitin ligase 241			2			Os02g0191500	LOC_Os02g09820.1						
25321	RING243	OsRING243	RING-TYPE E3 UBIQUITIN LIGASE 243	RING-type E3 ubiquitin ligase 243			8			Os08g0548300	LOC_Os08g43480.1, LOC_Os08g43480.2						
25322	RING244	OsRING244	RING-TYPE E3 UBIQUITIN LIGASE 244	RING-type E3 ubiquitin ligase 244			9			Os09g0535100	LOC_Os09g36460.1						
25323	RING245	OsRING245	RING-TYPE E3 UBIQUITIN LIGASE 245	RING-type E3 ubiquitin ligase 245			3			Os03g0324900	LOC_Os03g20870.1						
25324	RING246	OsRING246	RING-TYPE E3 UBIQUITIN LIGASE 246	RING-type E3 ubiquitin ligase 246			3			Os03g0271600	LOC_Os03g16480.1						
25325	RING248	OsRING248	RING-TYPE E3 UBIQUITIN LIGASE 248	RING-type E3 ubiquitin ligase 248			10			Os10g0487400	LOC_Os10g34590.1						
25326	RING249	OsRING249	RING-TYPE E3 UBIQUITIN LIGASE 249	RING-type E3 ubiquitin ligase 249			2			Os02g0767600	LOC_Os02g52870.1						
25327	RING25	OsRING25	RING-TYPE E3 UBIQUITIN LIGASE 25	RING-type E3 ubiquitin ligase 25			1			Os01g0168400	LOC_Os01g07390.1						
25328	RING250	OsRING250	RING-TYPE E3 UBIQUITIN LIGASE 250	RING-type E3 ubiquitin ligase 250			6				LOC_Os06g10800.1						
25329	RING251	OsRING251	RING-TYPE E3 UBIQUITIN LIGASE 251	RING-type E3 ubiquitin ligase 251			2			Os02g0248200	LOC_Os02g15020.1						
25330	RING253	OsRING253	RING-TYPE E3 UBIQUITIN LIGASE 253	RING-type E3 ubiquitin ligase 253			6			Os06g0535200	LOC_Os06g34430.1						
25331	RING254	OsRING254	RING-TYPE E3 UBIQUITIN LIGASE 254	RING-type E3 ubiquitin ligase 254			2				LOC_Os02g14990.1						
25332	RING256	OsRING256	RING-TYPE E3 UBIQUITIN LIGASE 256	RING-type E3 ubiquitin ligase 256			2			Os02g0248240	LOC_Os02g15010.1						
25333	RING257	OsRING257	RING-TYPE E3 UBIQUITIN LIGASE 257	RING-type E3 ubiquitin ligase 257			6			Os06g0537500	LOC_Os06g34640.1						
25334	RING258	OsRING258	RING-TYPE E3 UBIQUITIN LIGASE 258	RING-type E3 ubiquitin ligase 258			8			Os08g0563500	LOC_Os08g44950.1						
25335	RING259	OsRING259	RING-TYPE E3 UBIQUITIN LIGASE 259	RING-type E3 ubiquitin ligase 259			2			Os02g0248100	LOC_Os02g15000.1						
25336	RING26	OsRING26	RING-TYPE E3 UBIQUITIN LIGASE 26	RING-type E3 ubiquitin ligase 26			5			Os05g0316000	LOC_Os05g25180.1						
25337	RING260	OsRING260	RING-TYPE E3 UBIQUITIN LIGASE 260	RING-type E3 ubiquitin ligase 260			2			Os02g0820200	LOC_Os02g57460.1						
25338	RING261	OsRING261	RING-TYPE E3 UBIQUITIN LIGASE 261	RING-type E3 ubiquitin ligase 261			2			Os02g0249200	LOC_Os02g15110.1						
25339	RING262	OsRING262	RING-TYPE E3 UBIQUITIN LIGASE 262	RING-type E3 ubiquitin ligase 262			6			Os06g0534500	LOC_Os06g34360.1						
25340	RING263	OsRING263	RING-TYPE E3 UBIQUITIN LIGASE 263	RING-type E3 ubiquitin ligase 263			5			Os05g0241300	LOC_Os05g15170.1						
25341	RING264	OsRING264	RING-TYPE E3 UBIQUITIN LIGASE 264	RING-type E3 ubiquitin ligase 264			2				LOC_Os02g15100.1						
25342	RING265	OsRING265	RING-TYPE E3 UBIQUITIN LIGASE 265	RING-type E3 ubiquitin ligase 265			6			Os06g0537300	LOC_Os06g34620.1						
25343	RING266	OsRING266	RING-TYPE E3 UBIQUITIN LIGASE 266	RING-type E3 ubiquitin ligase 266			6				LOC_Os06g34860.1						
25344	RING267	OsRING267	RING-TYPE E3 UBIQUITIN LIGASE 267	RING-type E3 ubiquitin ligase 267			6			Os06g0539900	LOC_Os06g34870.1						
25345	RING27	OsRING27	RING-TYPE E3 UBIQUITIN LIGASE 27	RING-type E3 ubiquitin ligase 27			2			Os02g0124700	LOC_Os02g03220.1						
25346	RAE3	OsRING273, RING273, OsRAE3	REGULATOR OF AWN ELONGATION 3	RING-type E3 ubiquitin ligase 273, Regulator of Awn Elongation 3	RING-TYPE E3 UBIQUITIN LIGASE 273	rae3	6	GO:0061630: ubiquitin protein ligase activity. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn	Os06g0695900	LOC_Os06g48065.1				GO:0044238 - primary metabolic process, GO:0016020 - membrane, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0043170 - macromolecule metabolic process	TO:0000072 - awn length, TO:0002734 - awn presence, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009038 - palea , PO:0009037 - lemma , PO:0009066 - anther 
25347	RING274	OsRING274	RING-TYPE E3 UBIQUITIN LIGASE 274	RING-type E3 ubiquitin ligase 274			2			Os02g0516600	LOC_Os02g31150.1						
25348	RING280	OsRING280	RING-TYPE E3 UBIQUITIN LIGASE 280	RING-type E3 ubiquitin ligase 280			3			Os03g0380900	LOC_Os03g26420.1						
25349	RING281	OsRING281	RING-TYPE E3 UBIQUITIN LIGASE 281	RING-type E3 ubiquitin ligase 281			2			Os02g0687500	LOC_Os02g46220.1						
25350	RING286	OsRING286	RING-TYPE E3 UBIQUITIN LIGASE 286	RING-type E3 ubiquitin ligase 286			2			Os02g0557300	LOC_Os02g35144.1						
25351	RING287	OsRING287	RING-TYPE E3 UBIQUITIN LIGASE 287	RING-type E3 ubiquitin ligase 287			2			Os02g0832150	LOC_Os02g58540.1						
25352	RING288	OsRING288	RING-TYPE E3 UBIQUITIN LIGASE 288	RING-type E3 ubiquitin ligase 288			11			Os11g0150450	LOC_Os11g05300.1						
25353	RING289	OsRING289	RING-TYPE E3 UBIQUITIN LIGASE 289	RING-type E3 ubiquitin ligase 289			12			Os12g0149100	LOC_Os12g05370.1						
25354	RING29	OsRING29	RING-TYPE E3 UBIQUITIN LIGASE 29	RING-type E3 ubiquitin ligase 29			11			Os11g0294600	LOC_Os11g18947.2, LOC_Os11g18947.1, LOC_Os11g18947.3						
25355	RING291	OsRING291, E3BB, OsE3BB, BB, OsBB, E3BB, OsE3BB	RING-TYPE E3 UBIQUITIN LIGASE 291	RING-type E3 ubiquitin ligase 291, BIG BROTHER, E3 ubiquitin-protein ligase BIG BROTHER			9	orthologous to the Arabidopsis central organ size-control protein BIG BROTHER (BB).		Os09g0525400	LOC_Os09g35690.1, LOC_Os09g35690.2				GO:0046621 - negative regulation of organ growth, GO:0004842 - ubiquitin-protein ligase activity, GO:0031624 - ubiquitin conjugating enzyme binding, GO:0016567 - protein ubiquitination		
25356	RING292	OsRING292	RING-TYPE E3 UBIQUITIN LIGASE 292	RING-type E3 ubiquitin ligase 292			3			Os03g0648600	LOC_Os03g44636.1						
25357	RING293	OsRING293	RING-TYPE E3 UBIQUITIN LIGASE 293	RING-type E3 ubiquitin ligase 293			4			Os04g0580866	LOC_Os04g49170.1						
25358	RING294	OsRING294	RING-TYPE E3 UBIQUITIN LIGASE 294	RING-type E3 ubiquitin ligase 294			5			Os05g0352700	LOC_Os05g28460.1, LOC_Os05g28470.1						
25359	RING295	OsRING295	RING-TYPE E3 UBIQUITIN LIGASE 295	RING-type E3 ubiquitin ligase 295			8			Os08g0484200	LOC_Os08g37760.1						
25360	RING297	OsRING297	RING-TYPE E3 UBIQUITIN LIGASE 297	RING-type E3 ubiquitin ligase 297			2			Os02g0572200	LOC_Os02g36300.1						
25361	RING298	OsRING298	RING-TYPE E3 UBIQUITIN LIGASE 298	RING-type E3 ubiquitin ligase 298			4			Os04g0450300	LOC_Os04g37730.1						
25362	RING299	OsRING299	RING-TYPE E3 UBIQUITIN LIGASE 299	RING-type E3 ubiquitin ligase 299			3			Os03g0149700	LOC_Os03g05560.1						
25363	RING30	OsRING30	RING-TYPE E3 UBIQUITIN LIGASE 30	RING-type E3 ubiquitin ligase 30			3			Os03g0598700	LOC_Os03g40170.1, LOC_Os03g40170.2						
25364	RING300	OsRING300	RING-TYPE E3 UBIQUITIN LIGASE 300	RING-type E3 ubiquitin ligase 300			3			Os03g0149800	LOC_Os03g05570.1						
25365	RING301	OsRING301	RING-TYPE E3 UBIQUITIN LIGASE 301	RING-type E3 ubiquitin ligase 301			9			Os09g0468800	LOC_Os09g29370.1						
25366	RING302	OsRING302	RING-TYPE E3 UBIQUITIN LIGASE 302	RING-type E3 ubiquitin ligase 302			2			Os02g0790600	LOC_Os02g54830.1						
25367	RING303	OsRING303	RING-TYPE E3 UBIQUITIN LIGASE 303	RING-type E3 ubiquitin ligase 303			4			Os04g0590900	LOC_Os04g50100.1						
25368	RING305	OsRING305	RING-TYPE E3 UBIQUITIN LIGASE 305	RING-type E3 ubiquitin ligase 305			2			Os02g0692000	LOC_Os02g46600.1						
25369	WLG	OsRING306, OsWLG, FLW3, OsFLW3	WIDTH OF LEAF AND GRAIN	RING-type E3 ubiquitin ligase 306, FLAG LEAF WIDTH 3	RING-TYPE E3 UBIQUITIN LIGASE 306		8		 Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf	Os08g0445000	LOC_Os08g34550.1					TO:0000370 - leaf width, TO:0000975 - grain width	
25370	RING308	OsRING308	RING-TYPE E3 UBIQUITIN LIGASE 308	RING-type E3 ubiquitin ligase 308			5			Os05g0141500	LOC_Os05g04950.2, LOC_Os05g04950.1						
25371	RING309	OsRING309	RING-TYPE E3 UBIQUITIN LIGASE 309	RING-type E3 ubiquitin ligase 309			5			Os05g0552400	LOC_Os05g47900.1						
25372	RING311	OsRING311	RING-TYPE E3 UBIQUITIN LIGASE 311	RING-type E3 ubiquitin ligase 311			7			Os07g0501900	LOC_Os07g31850.1						
25373	RING312	OsRING312	RING-TYPE E3 UBIQUITIN LIGASE 312	RING-type E3 ubiquitin ligase 312			11			Os11g0600700	LOC_Os11g38800.2, LOC_Os11g38800.1						
25374	RING313	OsRING313	RING-TYPE E3 UBIQUITIN LIGASE 313	RING-type E3 ubiquitin ligase 313			8			Os08g0436200	LOC_Os08g33860.2, LOC_Os08g33860.1						
25375	RING314	OsRING314	RING-TYPE E3 UBIQUITIN LIGASE 314	RING-type E3 ubiquitin ligase 314			2			Os02g0577100	LOC_Os02g36740.7, LOC_Os02g36740.1, LOC_Os02g36740.2, LOC_Os02g36740.3, LOC_Os02g36740.4, LOC_Os02g36740.5, LOC_Os02g36740.8						
25376	RING315	OsRING315	RING-TYPE E3 UBIQUITIN LIGASE 315	RING-type E3 ubiquitin ligase 315			9	the candidate gene for both qAC9-2 (amylose content) and qGC9-2 (gel consistency). TO:0001069: cooking quality trait.	 Character as QTL - Grain quality,  Seed - Physiological traits - Storage substances	Os09g0413000	LOC_Os09g24650.2, LOC_Os09g24650.3, LOC_Os09g24650.4, LOC_Os09g24650.1				GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0016020 - membrane	TO:0000196 - amylose content, TO:0000211 - gel consistency	
25377	RING324	OsRING324	RING-TYPE E3 UBIQUITIN LIGASE 324	RING-type E3 ubiquitin ligase 324			8			Os08g0157400	LOC_Os08g06090.1						
25378	RING326	OsRING326	RING-TYPE E3 UBIQUITIN LIGASE 326	RING-type E3 ubiquitin ligase 326			7			Os07g0686300	LOC_Os07g48680.1						
25379	RING328	OsRING328	RING-TYPE E3 UBIQUITIN LIGASE 328	RING-type E3 ubiquitin ligase 328			4			Os04g0579200	LOC_Os04g49000.1						
25380	RING33	OsRING33	RING-TYPE E3 UBIQUITIN LIGASE 33	RING-type E3 ubiquitin ligase 33			2			Os02g0674700	LOC_Os02g45240.1						
25381	RING330	OsRING330	RING-TYPE E3 UBIQUITIN LIGASE 330	RING-type E3 ubiquitin ligase 330			12			Os12g0115600	LOC_Os12g02350.1						
25382	RING332	OsRING332	RING-TYPE E3 UBIQUITIN LIGASE 332	RING-type E3 ubiquitin ligase 332			5			Os05g0164200	LOC_Os05g07140.1						
25383	RING333	OsRING333	RING-TYPE E3 UBIQUITIN LIGASE 333	RING-type E3 ubiquitin ligase 333			11			Os11g0610600	LOC_Os11g39640.1						
25384	RING335	OsRING335	RING-TYPE E3 UBIQUITIN LIGASE 335	RING-type E3 ubiquitin ligase 335			10			Os10g0574400	LOC_Os10g42390.1						
25385	RING336	OsRING336	RING-TYPE E3 UBIQUITIN LIGASE 336	RING-type E3 ubiquitin ligase 336			5			Os05g0495000	LOC_Os05g41520.1						
25386	RING337	OsRING337	RING-TYPE E3 UBIQUITIN LIGASE 337	RING-type E3 ubiquitin ligase 337			9			Os09g0298500	LOC_Os09g12720.1, LOC_Os09g12720.2						
25387	RING338	OsRING338	RING-TYPE E3 UBIQUITIN LIGASE 338	RING-type E3 ubiquitin ligase 338			2			Os02g0727700	LOC_Os02g49550.1						
25388	RING339	OsRING339	RING-TYPE E3 UBIQUITIN LIGASE 339	RING-type E3 ubiquitin ligase 339			9			Os09g0242800	LOC_Os09g06740.1						
25389	RING340	OsRING340	RING-TYPE E3 UBIQUITIN LIGASE 340	RING-type E3 ubiquitin ligase 340			9			Os09g0243200	LOC_Os09g06770.1						
25390	RING342	OsRING342	RING-TYPE E3 UBIQUITIN LIGASE 342	RING-type E3 ubiquitin ligase 342			6			Os06g0218300	LOC_Os06g11450.1						
25391	RING349	OsRING349	RING-TYPE E3 UBIQUITIN LIGASE 349	RING-type E3 ubiquitin ligase 349			2			Os02g0798200	LOC_Os02g55480.1, LOC_Os02g55480.2						
25392	RING35	OsRING35	RING-TYPE E3 UBIQUITIN LIGASE 35	RING-type E3 ubiquitin ligase 35			7			Os07g0463400	LOC_Os07g27950.2, LOC_Os07g27950.1						
25393	RING351	OsRING351	RING-TYPE E3 UBIQUITIN LIGASE 351	RING-type E3 ubiquitin ligase 351			5			Os05g0408800	LOC_Os05g33830.1						
25394	RING352	OsRING352	RING-TYPE E3 UBIQUITIN LIGASE 352	RING-type E3 ubiquitin ligase 352			6				LOC_Os06g08250.1						
25395	RING353	OsRING353	RING-TYPE E3 UBIQUITIN LIGASE 353	RING-type E3 ubiquitin ligase 353			2			Os02g0798600	LOC_Os02g55520.2, LOC_Os02g55520.1						
25396	RING355	OsRING355	RING-TYPE E3 UBIQUITIN LIGASE 355	RING-type E3 ubiquitin ligase 355			3			Os03g0188200	LOC_Os03g08920.1						
25397	RING356	OsRING356	RING-TYPE E3 UBIQUITIN LIGASE 356	RING-type E3 ubiquitin ligase 356			9			Os09g0542600	LOC_Os09g37050.1						
25398	RING357	OsRING357	RING-TYPE E3 UBIQUITIN LIGASE 357	RING-type E3 ubiquitin ligase 357			6				LOC_Os06g16940.1						
25399	RING359	OsRING359	RING-TYPE E3 UBIQUITIN LIGASE 359	RING-type E3 ubiquitin ligase 359			3			Os03g0211100	LOC_Os03g11260.1						
25400	RING360	OsRING360	RING-TYPE E3 UBIQUITIN LIGASE 360	RING-type E3 ubiquitin ligase 360			5			Os05g0452800	LOC_Os05g37900.1						
25401	RING363	OsRING363	RING-TYPE E3 UBIQUITIN LIGASE 363	RING-type E3 ubiquitin ligase 363			3			Os03g0279900	LOC_Os03g17170.1						
25402	RING364	OsRING364	RING-TYPE E3 UBIQUITIN LIGASE 364	RING-type E3 ubiquitin ligase 364			3			Os03g0741700	LOC_Os03g53080.1						
25403	RING366	OsRING366	RING-TYPE E3 UBIQUITIN LIGASE 366	RING-type E3 ubiquitin ligase 366			10			Os10g0546900	LOC_Os10g39936.1						
25404	RING367	OsRING367	RING-TYPE E3 UBIQUITIN LIGASE 367	RING-type E3 ubiquitin ligase 367			6			Os06g0535400	LOC_Os06g34450.1						
25405	RING368	OsRING368	RING-TYPE E3 UBIQUITIN LIGASE 368	RING-type E3 ubiquitin ligase 368			11			Os11g0703200	LOC_Os11g47690.1						
25406	RING369	OsRING369	RING-TYPE E3 UBIQUITIN LIGASE 369	RING-type E3 ubiquitin ligase 369			3			Os03g0398250	LOC_Os03g28040.1						
25407	RING370	OsRING370	RING-TYPE E3 UBIQUITIN LIGASE 370	RING-type E3 ubiquitin ligase 370			5			Os05g0359833	LOC_Os05g29676.1						
25408	RING371	OsRING371	RING-TYPE E3 UBIQUITIN LIGASE 371	RING-type E3 ubiquitin ligase 371			5			Os05g0360400	LOC_Os05g29710.1						
25409	RING372	OsRING372	RING-TYPE E3 UBIQUITIN LIGASE 372	RING-type E3 ubiquitin ligase 372			9			Os09g0376700	LOC_Os09g20980.1						
25410	RING379	OsRING379	RING-TYPE E3 UBIQUITIN LIGASE 379	RING-type E3 ubiquitin ligase 379			8				LOC_Os08g41520.1						
25411	RING380	OsRING380	RING-TYPE E3 UBIQUITIN LIGASE 380	RING-type E3 ubiquitin ligase 380			9			Os09g0505000	LOC_Os09g32730.1						
25412	RING381	OsRING381	RING-TYPE E3 UBIQUITIN LIGASE 381	RING-type E3 ubiquitin ligase 381			4			Os04g0487700	LOC_Os04g41070.1						
25413	RING383	OsRING383	RING-TYPE E3 UBIQUITIN LIGASE 383	RING-type E3 ubiquitin ligase 383			7			Os07g0647800	LOC_Os07g45350.5, LOC_Os07g45350.1, LOC_Os07g45350.2, LOC_Os07g45350.3, LOC_Os07g45350.4						
25414	RING388	OsRING388	RING-TYPE E3 UBIQUITIN LIGASE 388	RING-type E3 ubiquitin ligase 388			11			Os11g0113900	LOC_Os11g02250.1						
25415	RING390	OsRING390	RING-TYPE E3 UBIQUITIN LIGASE 390	RING-type E3 ubiquitin ligase 390			4			Os04g0585000	LOC_Os04g49550.1						
25416	RING392	OsRING392	RING-TYPE E3 UBIQUITIN LIGASE 392	RING-type E3 ubiquitin ligase 392			11			Os11g0582100	LOC_Os11g37230.1, LOC_Os11g37230.2						
25417	RING394	OsRING394	RING-TYPE E3 UBIQUITIN LIGASE 394	RING-type E3 ubiquitin ligase 394			12			Os12g0140200	LOC_Os12g04590.2, LOC_Os12g04590.1						
25418	RING395	OsRING395	RING-TYPE E3 UBIQUITIN LIGASE 395	RING-type E3 ubiquitin ligase 395			12			Os12g0140700	LOC_Os12g04660.1						
25419	RING396	OsRING396	RING-TYPE E3 UBIQUITIN LIGASE 396	RING-type E3 ubiquitin ligase 396			5			Os05g0207400	LOC_Os05g11720.1						
25420	RING397	OsRING397	RING-TYPE E3 UBIQUITIN LIGASE 397	RING-type E3 ubiquitin ligase 397			6		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os06g0717600	LOC_Os06g50370.1				GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus	TO:0000276 - drought tolerance, TO:0000074 - blast disease	
25421	RING4	OsRING4	RING-TYPE E3 UBIQUITIN LIGASE 4	RING-type E3 ubiquitin ligase 4			3			Os03g0391100	LOC_Os03g27360.1						
25422	RING40	OsRING40	RING-TYPE E3 UBIQUITIN LIGASE 40	RING-type E3 ubiquitin ligase 40			2				LOC_Os02g36330.1						
25423	RING400	OsRING400	RING-TYPE E3 UBIQUITIN LIGASE 400	RING-type E3 ubiquitin ligase 400			5			Os05g0564300	LOC_Os05g48970.1, LOC_Os05g48970.2						
25424	RING401	OsRING401	RING-TYPE E3 UBIQUITIN LIGASE 401	RING-type E3 ubiquitin ligase 401			10			Os10g0346200	LOC_Os10g20600.1						
25425	RING402	OsRING402	RING-TYPE E3 UBIQUITIN LIGASE 402	RING-type E3 ubiquitin ligase 402			6			Os06g0257700	LOC_Os06g14640.1						
25426	RING403	OsRING403	RING-TYPE E3 UBIQUITIN LIGASE 403	RING-type E3 ubiquitin ligase 403			6			Os06g0187300	LOC_Os06g08820.1						
25427	RING406	OsRING406	RING-TYPE E3 UBIQUITIN LIGASE 406	RING-type E3 ubiquitin ligase 406			11			Os11g0703300	LOC_Os11g47700.1						
25428	RING407	OsRING407	RING-TYPE E3 UBIQUITIN LIGASE 407	RING-type E3 ubiquitin ligase 407			6			Os06g0639100	LOC_Os06g43210.1						
25429	RING409	OsRING409	RING-TYPE E3 UBIQUITIN LIGASE 409	RING-type E3 ubiquitin ligase 409			7				LOC_Os07g06540.1						
25430	RING41	OsRING41	RING-TYPE E3 UBIQUITIN LIGASE 41	RING-type E3 ubiquitin ligase 41			1			Os01g0212700	LOC_Os01g11460.1						
25431	RING410	OsRING410	RING-TYPE E3 UBIQUITIN LIGASE 410	RING-type E3 ubiquitin ligase 410			12			Os12g0140600	LOC_Os12g04650.3, LOC_Os12g04650.4, LOC_Os12g04650.2, LOC_Os12g04650.1						
25432	RING411	OsRING411	RING-TYPE E3 UBIQUITIN LIGASE 411	RING-type E3 ubiquitin ligase 411			11			Os11g0604600	LOC_Os11g39130.1, LOC_Os11g39130.4, LOC_Os11g39130.3						
25433	RING414	OsRING414	RING-TYPE E3 UBIQUITIN LIGASE 414	RING-type E3 ubiquitin ligase 414			8			Os08g0550400	LOC_Os08g43670.1						
25434	RING415	OsRING415	RING-TYPE E3 UBIQUITIN LIGASE 415	RING-type E3 ubiquitin ligase 415			10			Os10g0544600	LOC_Os10g39770.1						
25435	RING416	OsRING416, OsvWA30, vWA30	RING-TYPE E3 UBIQUITIN LIGASE 416	RING-type E3 ubiquitin ligase 416, von Willebrand factor A30	RING-TYPE E3 UBIQUITIN LIGASE 416		10	LOC_Os10g32750 = OsRING416 (LOC_Os10g32760 = OsRING182)  in Wang et al. 2022.		Os10g0464800	LOC_Os10g32750.1				GO:0043170 - macromolecule metabolic process, GO:0044238 - primary metabolic process, GO:0046872 - metal ion binding		
25436	RING418	OsRING418	RING-TYPE E3 UBIQUITIN LIGASE 418	RING-type E3 ubiquitin ligase 418			1			Os01g0686700	LOC_Os01g49280.1						
25437	RING419	OsRING419	RING-TYPE E3 UBIQUITIN LIGASE 419	RING-type E3 ubiquitin ligase 419			6			Os06g0687200	LOC_Os06g47270.1						
25438	RING42	OsRING42	RING-TYPE E3 UBIQUITIN LIGASE 42	RING-type E3 ubiquitin ligase 42			2			Os02g0249300	LOC_Os02g15120.1						
25439	RING420	OsRING420	RING-TYPE E3 UBIQUITIN LIGASE 420	RING-type E3 ubiquitin ligase 420			1			Os01g0673900	LOC_Os01g48310.1						
25440	RING421	OsRING421	RING-TYPE E3 UBIQUITIN LIGASE 421	RING-type E3 ubiquitin ligase 421			3			Os03g0108200	LOC_Os03g01790.1						
25441	RING422	OsRING422	RING-TYPE E3 UBIQUITIN LIGASE 422	RING-type E3 ubiquitin ligase 422			10			Os10g0545600	LOC_Os10g39850.1						
25442	RING424	OsRING424	RING-TYPE E3 UBIQUITIN LIGASE 424	RING-type E3 ubiquitin ligase 424			11			Os11g0565400	LOC_Os11g35870.4, LOC_Os11g35870.1, LOC_Os11g35870.2, LOC_Os11g35870.3						
25443	RING425	OsRING425	RING-TYPE E3 UBIQUITIN LIGASE 425	RING-type E3 ubiquitin ligase 425			1			Os01g0158900	LOC_Os01g06550.1						
25444	RING428	OsRING428	RING-TYPE E3 UBIQUITIN LIGASE 428	RING-type E3 ubiquitin ligase 428			6			Os06g0652550	LOC_Os06g44275.1						
25445	RING43	OsRING43	RING-TYPE E3 UBIQUITIN LIGASE 43	RING-type E3 ubiquitin ligase 43			1				LOC_Os01g11480.1						
25446	RING435	OsRING435	RING-TYPE E3 UBIQUITIN LIGASE 435	RING-type E3 ubiquitin ligase 435			12				LOC_Os12g04450.1						
25447	RING436	OsRING436	RING-TYPE E3 UBIQUITIN LIGASE 436	RING-type E3 ubiquitin ligase 436			4			Os04g0692300	LOC_Os04g59580.1						
25448	RING437	OsRING437	RING-TYPE E3 UBIQUITIN LIGASE 437	RING-type E3 ubiquitin ligase 437			12			Os12g0148000	LOC_Os12g05270.1						
25449	RING438	OsRING438	RING-TYPE E3 UBIQUITIN LIGASE 438	RING-type E3 ubiquitin ligase 438			12			Os12g0148100	LOC_Os12g05280.1						
25450	RING439	OsRING439	RING-TYPE E3 UBIQUITIN LIGASE 439	RING-type E3 ubiquitin ligase 439			11			Os11g0103400	LOC_Os11g01240.1						
25451	RING44	OsRING44	RING-TYPE E3 UBIQUITIN LIGASE 44	RING-type E3 ubiquitin ligase 44			12				LOC_Os12g42540.1						
25452	RING440	OsRING440	RING-TYPE E3 UBIQUITIN LIGASE 440	RING-type E3 ubiquitin ligase 440			12			Os12g0102900	LOC_Os12g01230.1						
25453	RING444	OsRING444	RING-TYPE E3 UBIQUITIN LIGASE 444	RING-type E3 ubiquitin ligase 444			4			Os04g0463700	LOC_Os04g38970.2, LOC_Os04g38970.1						
25454	RING446	OsRING446	RING-TYPE E3 UBIQUITIN LIGASE 446	RING-type E3 ubiquitin ligase 446			7			Os07g0557500	LOC_Os07g37140.1						
25455	RING447	OsRING447	RING-TYPE E3 UBIQUITIN LIGASE 447	RING-type E3 ubiquitin ligase 447			11			Os11g0578200	LOC_Os11g36970.1						
25456	RING448	OsRING448	RING-TYPE E3 UBIQUITIN LIGASE 448	RING-type E3 ubiquitin ligase 448			2			Os02g0694400	LOC_Os02g46720.3, LOC_Os02g46720.1, LOC_Os02g46720.2						
25457	RING449	OsRING449	RING-TYPE E3 UBIQUITIN LIGASE 449	RING-type E3 ubiquitin ligase 449			11			Os11g0300800	LOC_Os11g19500.1						
25458	RING450	OsRING450	RING-TYPE E3 UBIQUITIN LIGASE 450	RING-type E3 ubiquitin ligase 450			9			Os09g0559100	LOC_Os09g38640.1						
25459	RING451	OsRING451	RING-TYPE E3 UBIQUITIN LIGASE 451	RING-type E3 ubiquitin ligase 451			9			Os09g0559000	LOC_Os09g38630.1						
25460	RING452	OsRING452	RING-TYPE E3 UBIQUITIN LIGASE 452	RING-type E3 ubiquitin ligase 452			4			Os04g0492100	LOC_Os04g41470.1, LOC_Os04g41470.2						
25461	RING453	OsRING453	RING-TYPE E3 UBIQUITIN LIGASE 453	RING-type E3 ubiquitin ligase 453			3			Os03g0233500	LOC_Os03g13100.1						
25462	RING454	OsRING454	RING-TYPE E3 UBIQUITIN LIGASE 454	RING-type E3 ubiquitin ligase 454			3			Os03g0625800	LOC_Os03g42760.1						
25463	RING455	OsRING455	RING-TYPE E3 UBIQUITIN LIGASE 455	RING-type E3 ubiquitin ligase 455			3			Os03g0625933	LOC_Os03g42780.1						
25464	RING457	OsRING457	RING-TYPE E3 UBIQUITIN LIGASE 457	RING-type E3 ubiquitin ligase 457			2			Os02g0666900	LOC_Os02g44700.1						
25465	RING458	OsRING458	RING-TYPE E3 UBIQUITIN LIGASE 458	RING-type E3 ubiquitin ligase 458			2			Os02g0694700	LOC_Os02g46740.1						
25466	RING459	OsRING459	RING-TYPE E3 UBIQUITIN LIGASE 459	RING-type E3 ubiquitin ligase 459			8			Os08g0178100	LOC_Os08g08060.1						
25467	RING461	OsRING461	RING-TYPE E3 UBIQUITIN LIGASE 461	RING-type E3 ubiquitin ligase 461			11			Os11g0149800	LOC_Os11g05230.1						
25468	RING462	OsRING462	RING-TYPE E3 UBIQUITIN LIGASE 462	RING-type E3 ubiquitin ligase 462			11			Os11g0142800	LOC_Os11g04690.1						
25469	RING463	OsRING463	RING-TYPE E3 UBIQUITIN LIGASE 463	RING-type E3 ubiquitin ligase 463			12			Os12g0139100	LOC_Os12g04460.1						
25470	RING464	OsRING464	RING-TYPE E3 UBIQUITIN LIGASE 464	RING-type E3 ubiquitin ligase 464			7			Os07g0621500	LOC_Os07g42900.1						
25471	RING465	OsRING465	RING-TYPE E3 UBIQUITIN LIGASE 465	RING-type E3 ubiquitin ligase 465			10			Os10g0481400	LOC_Os10g34030.1						
25472	RING466	OsRING466	RING-TYPE E3 UBIQUITIN LIGASE 466	RING-type E3 ubiquitin ligase 466			12				LOC_Os12g01340.1						
25473	RING467	OsRING467	RING-TYPE E3 UBIQUITIN LIGASE 467	RING-type E3 ubiquitin ligase 467			12			Os12g0631200	LOC_Os12g43560.1						
25474	RING468	OsRING468	RING-TYPE E3 UBIQUITIN LIGASE 468	RING-type E3 ubiquitin ligase 468			9			Os09g0435250	LOC_Os09g26470.1						
25475	RING469	OsRING469	RING-TYPE E3 UBIQUITIN LIGASE 469	RING-type E3 ubiquitin ligase 469			9			Os09g0420000	LOC_Os09g25220.1						
25476	RING470	OsRING470	RING-TYPE E3 UBIQUITIN LIGASE 470	RING-type E3 ubiquitin ligase 470			9			Os09g0420100	LOC_Os09g25260.1, LOC_Os09g25260.2						
25477	RING471	OsRING471	RING-TYPE E3 UBIQUITIN LIGASE 471	RING-type E3 ubiquitin ligase 471			9			Os09g0419600	LOC_Os09g25200.1						
25478	RING472	OsRING472	RING-TYPE E3 UBIQUITIN LIGASE 472	RING-type E3 ubiquitin ligase 472			9			Os09g0434900	LOC_Os09g26460.1						
25479	RING473	OsRING473	RING-TYPE E3 UBIQUITIN LIGASE 473	RING-type E3 ubiquitin ligase 473			11			Os11g0599700	LOC_Os11g38710.1						
25480	RING475	OsRING475	RING-TYPE E3 UBIQUITIN LIGASE 475	RING-type E3 ubiquitin ligase 475			8			Os08g0451800	LOC_Os08g35060.1						
25481	RING476	OsRING476	RING-TYPE E3 UBIQUITIN LIGASE 476	RING-type E3 ubiquitin ligase 476			9			Os09g0283600	LOC_Os09g11170.1						
25482	RING48	OsRING48	RING-TYPE E3 UBIQUITIN LIGASE 48	RING-type E3 ubiquitin ligase 48			1			Os01g0213100	LOC_Os01g11490.1, LOC_Os01g11500.1						
25483	RING49	OsRING49	RING-TYPE E3 UBIQUITIN LIGASE 49	RING-type E3 ubiquitin ligase 49			5				LOC_Os05g11860.1						
25484	RING5	OsRING5	RING-TYPE E3 UBIQUITIN LIGASE 5	RING-type E3 ubiquitin ligase 5			1			Os01g0121200	LOC_Os01g03100.2, LOC_Os01g03100.1						
25485	RING51	OsRING51	RING-TYPE E3 UBIQUITIN LIGASE 51	RING-type E3 ubiquitin ligase 51			6			Os06g0167200	LOC_Os06g07100.1, LOC_Os06g07100.2						
25486	RING52	OsRING52	RING-TYPE E3 UBIQUITIN LIGASE 52	RING-type E3 ubiquitin ligase 52			6			Os06g0233200	LOC_Os06g12680.1						
25487	RING53	OsRING53	RING-TYPE E3 UBIQUITIN LIGASE 53	RING-type E3 ubiquitin ligase 53			1			Os01g0213100	LOC_Os01g11490.1, LOC_Os01g11500.1						
25488	RING54	OsRING54	RING-TYPE E3 UBIQUITIN LIGASE 54	RING-type E3 ubiquitin ligase 54			12			Os12g0108350	LOC_Os12g01750.1						
25489	RING55	OsRING55	RING-TYPE E3 UBIQUITIN LIGASE 55	RING-type E3 ubiquitin ligase 55			2			Os02g0248900	LOC_Os02g15080.1						
25490	RING56	OsRING56	RING-TYPE E3 UBIQUITIN LIGASE 56	RING-type E3 ubiquitin ligase 56			1			Os01g0830900	LOC_Os01g61470.1						
25491	RING57	OsRING57	RING-TYPE E3 UBIQUITIN LIGASE 57	RING-type E3 ubiquitin ligase 57			5			Os05g0468900	LOC_Os05g39260.1						
25492	RING58	OsRING58	RING-TYPE E3 UBIQUITIN LIGASE 58	RING-type E3 ubiquitin ligase 58			3			Os03g0340100	LOC_Os03g22080.1						
25493	RING59	OsRING59	RING-TYPE E3 UBIQUITIN LIGASE 59	RING-type E3 ubiquitin ligase 59			1			Os01g0822800	LOC_Os01g60730.1, LOC_Os01g60730.2						
25494	RING6	OsRING6	RING-TYPE E3 UBIQUITIN LIGASE 6	RING-type E3 ubiquitin ligase 6			3			Os03g0173900	LOC_Os03g07790.1						
25495	RING60	OsRING60	RING-TYPE E3 UBIQUITIN LIGASE 60	RING-type E3 ubiquitin ligase 60			10			Os10g0540000	LOC_Os10g39450.1						
25496	RING61	OsRING61	RING-TYPE E3 UBIQUITIN LIGASE 61	RING-type E3 ubiquitin ligase 61			9			Os09g0554200	LOC_Os09g38110.1						
25497	RING62	OsRING62	RING-TYPE E3 UBIQUITIN LIGASE 62	RING-type E3 ubiquitin ligase 62			2	Q9LRB7. E3 ubiquitin-protein ligase (EL5). GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os02g0561800	LOC_Os02g35347.1				GO:0004842 - ubiquitin-protein ligase activity, GO:0051301 - cell division, GO:0016567 - protein ubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0048364 - root development, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0016020 - membrane, GO:0005886 - plasma membrane, GO:0046872 - metal ion binding		
25498	RING63	OsRING63	RING-TYPE E3 UBIQUITIN LIGASE 63	RING-type E3 ubiquitin ligase 63			7			Os07g0618000	LOC_Os07g42610.1						
25499	RING65	OsRING65	RING-TYPE E3 UBIQUITIN LIGASE 65	RING-type E3 ubiquitin ligase 65			2			Os02g0561900	LOC_Os02g35440.1						
25500	RING66	OsRING66	RING-TYPE E3 UBIQUITIN LIGASE 66	RING-type E3 ubiquitin ligase 66			2	Q9LRB7. E3 ubiquitin-protein ligase (EL5). GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os02g0560600	LOC_Os02g35365.1				GO:0046872 - metal ion binding, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0051301 - cell division, GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0048364 - root development, GO:0009609 - response to symbiotic bacterium, GO:0009617 - response to bacterium, GO:0016020 - membrane, GO:0005886 - plasma membrane		
25501	RING67	OsRING67	RING-TYPE E3 UBIQUITIN LIGASE 67	RING-type E3 ubiquitin ligase 67			3			Os03g0398600	LOC_Os03g28080.1						
25502	RING69	OsRING69	RING-TYPE E3 UBIQUITIN LIGASE 69	RING-type E3 ubiquitin ligase 69			5			Os05g0478000	LOC_Os05g40020.1						
25503	RING7	OsRING7	RING-TYPE E3 UBIQUITIN LIGASE 7	RING-type E3 ubiquitin ligase 7			1			Os01g0123700	LOC_Os01g03290.1						
25504	RING70	OsRING70	RING-TYPE E3 UBIQUITIN LIGASE 70	RING-type E3 ubiquitin ligase 70			10			Os10g0566400	LOC_Os10g41660.1						
25505	RING71	OsRING71	RING-TYPE E3 UBIQUITIN LIGASE 71	RING-type E3 ubiquitin ligase 71			2			Os02g0688800	LOC_Os02g46340.1						
25506	RING72	OsRING72	RING-TYPE E3 UBIQUITIN LIGASE 72	RING-type E3 ubiquitin ligase 72			4			Os04g0586700	LOC_Os04g49700.1						
25507	RING74	OsRING74	RING-TYPE E3 UBIQUITIN LIGASE 74	RING-type E3 ubiquitin ligase 74			5			Os05g0476901	LOC_Os05g39940.1						
25508	RING81	OsRING81	RING-TYPE E3 UBIQUITIN LIGASE 81	RING-type E3 ubiquitin ligase 81			3			Os03g0206900	LOC_Os03g10890.1						
25509	RING83	OsRING83	RING-TYPE E3 UBIQUITIN LIGASE 83	RING-type E3 ubiquitin ligase 83			4			Os04g0487400	LOC_Os04g41050.1						
25510	RING84	OsRING84, OsvWA20, vWA20, OsRGLG5, RGLG5	RING-TYPE E3 UBIQUITIN LIGASE 84	RING-type E3 ubiquitin ligase 84, von Willebrand factor A20, RING DOMAIN LIGASE5, RING DOMAIN LIGASE 5	RING-TYPE E3 UBIQUITIN LIGASE 84	osrglg5	6	GO:1900150: regulation of defense response to fungus. GO:0061630: ubiquitin protein ligase activity.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0608800	LOC_Os06g40650.2, LOC_Os06g40650.3, LOC_Os06g40650.4, LOC_Os06g40650.1				GO:0002238 - response to molecule of fungal origin, GO:0042742 - defense response to bacterium, GO:0044238 - primary metabolic process, GO:0043170 - macromolecule metabolic process, GO:0016740 - transferase activity, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000203 - bacterial leaf streak disease resistance	
25511	RING85	OsRING85, OsvWA39, vWA39, OsRGLG2, RGLG2	RING-TYPE E3 UBIQUITIN LIGASE 85	RING-type E3 ubiquitin ligase 85, von Willebrand factor A39, RING DOMAIN LIGASE2, RING DOMAIN LIGASE 2	RING-TYPE E3 UBIQUITIN LIGASE 85		12		 Biochemical character,  Tolerance and resistance - Disease resistance	Os12g0288400	LOC_Os12g19030.1				GO:0016740 - transferase activity, GO:0043170 - macromolecule metabolic process, GO:0044238 - primary metabolic process, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
25512	RING88	OsRING88, OsvWA3, vWA3, OsRGLG3, RGLG3	RING-TYPE E3 UBIQUITIN LIGASE 88	RING-type E3 ubiquitin ligase 88, von Willebrand factor A3, RING DOMAIN LIGASE3, RING DOMAIN LIGASE 3	RING-TYPE E3 UBIQUITIN LIGASE 88		1		 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0960500	LOC_Os01g73000.2, LOC_Os01g73000.1				GO:0043170 - macromolecule metabolic process, GO:0002238 - response to molecule of fungal origin, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004842 - ubiquitin-protein ligase activity, GO:0042742 - defense response to bacterium, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0044238 - primary metabolic process, GO:0009611 - response to wounding		PO:0007632 - seed maturation stage 
25513	RING89	OsRING89, OsvWA26, vWA26, OsRGLG6, RGLG6	RING-TYPE E3 UBIQUITIN LIGASE 89	RING-type E3 ubiquitin ligase 89, von Willebrand factor A26, RING DOMAIN LIGASE6, RING DOMAIN LIGASE 6	RING-TYPE E3 UBIQUITIN LIGASE 89		8		 Biochemical character	Os08g0494300	LOC_Os08g38600.1				GO:0016740 - transferase activity, GO:0043170 - macromolecule metabolic process, GO:0009751 - response to salicylic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0002238 - response to molecule of fungal origin, GO:0044238 - primary metabolic process	TO:0000167 - cytokinin sensitivity	
25514	RING92	OsRING92	RING-TYPE E3 UBIQUITIN LIGASE 92	RING-type E3 ubiquitin ligase 92			1			Os01g0535300	LOC_Os01g35120.1						
25515	RING93	OsRING93	RING-TYPE E3 UBIQUITIN LIGASE 93	RING-type E3 ubiquitin ligase 93			6			Os06g0252500	LOC_Os06g14200.1						
25516	RING94	OsRING94, OsATL53, ATL53	RING-TYPE E3 UBIQUITIN LIGASE 94	RING-type E3 ubiquitin ligase 94, Arabidopsis Toxicos en Levadura 53			4	a member of ATL family of RING-H2 proteins.		Os04g0571800	LOC_Os04g48310.1				GO:0052386 - cell wall thickening, GO:0005634 - nucleus, GO:0016567 - protein ubiquitination, GO:0009901 - anther dehiscence, GO:0005737 - cytoplasm, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009808 - lignin metabolic process	TO:0000731 - lignin content	PO:0001035 - G anther dehiscence stage 
25517	RING95	OsRING95	RING-TYPE E3 UBIQUITIN LIGASE 95	RING-type E3 ubiquitin ligase 95			1			Os01g0266100	LOC_Os01g16120.1						
25518	RING96	OsRING96	RING-TYPE E3 UBIQUITIN LIGASE 96	RING-type E3 ubiquitin ligase 96			1			Os01g0736600	LOC_Os01g53500.1						
25519	RING97	OsRING97	RING-TYPE E3 UBIQUITIN LIGASE 97	RING-type E3 ubiquitin ligase 97			5			Os05g0526600	LOC_Os05g45060.1						
25520	NRP1	OsNRP1	N-RICH PROTEIN 1	N-rich protein 1	N-RICH PROTEIN 1		1		 Tolerance and resistance - Disease resistance	Os01g0550300	LOC_Os01g36950.1, LOC_Os01g36950.4, LOC_Os01g36950.3, LOC_Os01g36950.2				GO:0034976 - response to endoplasmic reticulum stress, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25521	NRP3	OsNRP3	N-RICH PROTEIN 3	N-rich protein 3	N-RICH PROTEIN 3		2		 Tolerance and resistance - Disease resistance	Os02g0745600	LOC_Os02g51140.2, LOC_Os02g51140.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25522	NRP5	OsNRP5	N-RICH PROTEIN 5	N-rich protein 5	N-RICH PROTEIN 5		5	Development and cell death domain (DCD)-containing protein.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Character as QTL - Germination,  Seed - Physiological traits	Os05g0498700	LOC_Os05g41930.2, LOC_Os05g41930.3, LOC_Os05g41930.1				GO:0001666 - response to hypoxia, GO:0080140 - regulation of jasmonic acid metabolic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0034976 - response to endoplasmic reticulum stress, GO:0009740 - gibberellic acid mediated signaling, GO:0009738 - abscisic acid mediated signaling, GO:0010373 - negative regulation of gibberellin biosynthetic process, GO:0090359 - negative regulation of abscisic acid biosynthetic process, GO:0009687 - abscisic acid metabolic process, GO:0034059 - response to anoxia, GO:0050832 - defense response to fungus	TO:0000430 - germination rate, TO:0000015 - oxygen sensitivity, TO:0000074 - blast disease, TO:0001007 - coleoptile length	
25523	NRP6	OsNRP6	N-RICH PROTEIN 6	N-rich protein 6	N-RICH PROTEIN 6		5		 Tolerance and resistance - Disease resistance	Os05g0594100	LOC_Os05g51590.1				GO:0050832 - defense response to fungus, GO:0034976 - response to endoplasmic reticulum stress	TO:0000074 - blast disease	
25524	NRP8	OsNRP8	N-RICH PROTEIN 8	N-rich protein 8	N-RICH PROTEIN 8		6		 Tolerance and resistance - Disease resistance	Os06g0227200	LOC_Os06g12260.2, LOC_Os06g12260.1, LOC_Os06g12260.3				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25525	NRP7	OsNRP7	N-RICH PROTEIN 7	N-rich protein 7	N-RICH PROTEIN 7		6			Os06g0174350/Os06g0174375	LOC_Os06g07770.1				GO:0034976 - response to endoplasmic reticulum stress		
25526	NRP11	OsNRP11	N-RICH PROTEIN 11	N-rich protein 11	N-RICH PROTEIN 11		9			Os09g0563700	LOC_Os09g39020.1				GO:0034976 - response to endoplasmic reticulum stress		
25527	NRP12	OsNRP12	N-RICH PROTEIN 12	N-rich protein 12	N-RICH PROTEIN 12		11			Os11g0525700	LOC_Os11g32270.2, LOC_Os11g32270.1, LOC_Os11g32270.3						
25528	AK2	OsAK2	ASPARTOKINASE 2	aspartokinase 2	ASPARTOKINASE 2		1	GO:2000282: regulation of cellular amino acid biosynthetic process.	 Seed - Physiological traits - Storage substances,  Biochemical character	Os01g0927900	LOC_Os01g70300.3, LOC_Os01g70300.1, LOC_Os01g70300.2				GO:0009088 - threonine biosynthetic process, GO:0051955 - regulation of amino acid transport, GO:0008652 - cellular amino acid biosynthetic process, GO:0043200 - response to amino acid stimulus, GO:0004072 - aspartate kinase activity, GO:0005524 - ATP binding, GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0016310 - phosphorylation	TO:0000266 - chalky endosperm, TO:0002673 - amino acid content	
25529	DHDPS1	OsDHDPS1	DIHYDRODIPICOLINATE SYNTHASE 1	dihydrodipicolinate synthase 1	DIHYDRODIPICOLINATE SYNTHASE 1		4	GO:2000282: regulation of cellular amino acid biosynthetic process.	 Biochemical character,  Seed - Physiological traits - Storage substances	Os04g0574800	LOC_Os04g48540.1				GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0019877 - diaminopimelate biosynthetic process, GO:0051955 - regulation of amino acid transport, GO:0008652 - cellular amino acid biosynthetic process, GO:0043200 - response to amino acid stimulus, GO:0008840 - dihydrodipicolinate synthase activity	TO:0002673 - amino acid content	
25530	AGC2	OsAGC2	AGC PROTEIN KINASE 2	AGC protein kinase 2	AGC PROTEIN KINASE 2		1		 Biochemical character	Os01g0233800	LOC_Os01g13270.1, LOC_Os01g13270.2				GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005634 - nucleus, GO:0004672 - protein kinase activity		
25531	AGC4	OsAGC4	AGC PROTEIN KINASE 4	AGC protein kinase 4	AGC PROTEIN KINASE 4		2		 Biochemical character	Os02g0603000	LOC_Os02g39090.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation		
25532	AGC5	OsAGC5	AGC PROTEIN KINASE 5	AGC protein kinase 5	AGC PROTEIN KINASE 5		2		 Biochemical character	Os02g0654300	LOC_Os02g43740.1				GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0012505 - endomembrane system, GO:0004674 - protein serine/threonine kinase activity		
25533	AGC6	OsAGC6	AGC PROTEIN KINASE 6	AGC protein kinase 6	AGC PROTEIN KINASE 6		2		 Biochemical character	Os02g0725000	LOC_Os02g49310.1				GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity		
25534	AGC8	OsAGC8	AGC PROTEIN KINASE 8	AGC protein kinase 8	AGC PROTEIN KINASE 8		3	GO:0035556: intracellular signal transduction.	 Biochemical character	Os03g0711800	LOC_Os03g50390.1, LOC_Os03g50390.2				GO:0018105 - peptidyl-serine phosphorylation, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0012505 - endomembrane system		PO:0000003 - whole plant 
25535	AGC11	OsAGC11	AGC PROTEIN KINASE 11	AGC protein kinase 11	AGC PROTEIN KINASE 11		4		 Biochemical character	Os04g0546300	LOC_Os04g46180.1, LOC_Os04g46180.2				GO:0005737 - cytoplasm, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0005524 - ATP binding		PO:0000003 - whole plant 
25536	AGC12	OsAGC12	AGC PROTEIN KINASE 12	AGC protein kinase 12	AGC PROTEIN KINASE 12		5		 Biochemical character	Os05g0237400	LOC_Os05g14750.1				GO:0004672 - protein kinase activity, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005524 - ATP binding		
25537	AGC14	OsAGC14	AGC PROTEIN KINASE 14	AGC protein kinase 14	AGC PROTEIN KINASE 14		7		 Biochemical character	Os07g0680900	LOC_Os07g48290.1, LOC_Os07g48290.2				GO:0018105 - peptidyl-serine phosphorylation, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus		PO:0000003 - whole plant 
25538	AGC15	OsAGC15	AGC PROTEIN KINASE 15	AGC protein kinase 15	AGC PROTEIN KINASE 15		8		 Biochemical character	Os08g0491200	LOC_Os08g38320.3, LOC_Os08g38320.2, LOC_Os08g38320.1				GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0004674 - protein serine/threonine kinase activity		
25539	AGC16	OsAGC16	AGC PROTEIN KINASE 16	AGC protein kinase 16	AGC PROTEIN KINASE 16		9		 Biochemical character	Os09g0258500	LOC_Os09g08420.1				GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation		
25540	AGC18	OsAGC18	AGC PROTEIN KINASE 18	AGC protein kinase 18	AGC PROTEIN KINASE 18		9		 Biochemical character	Os09g0486700	LOC_Os09g31210.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005886 - plasma membrane, GO:0004672 - protein kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding		
25541	AGC19	OsAGC19	AGC PROTEIN KINASE 19	AGC protein kinase 19	AGC PROTEIN KINASE 19		10		 Biochemical character	Os10g0562500	LOC_Os10g41290.1				GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity, GO:0005886 - plasma membrane, GO:0005634 - nucleus		
25542	AGC20	OsAGC20	AGC PROTEIN KINASE 20	AGC protein kinase 20	AGC PROTEIN KINASE 20		11	AB018444. Q2RBR1. GO:0106310: protein serine kinase activity.	 Biochemical character	Os11g0102200	LOC_Os11g01140.1, LOC_Os11g01140.3, LOC_Os11g01140.2				GO:0009882 - blue light photoreceptor activity, GO:0015979 - photosynthesis, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation, GO:0005886 - plasma membrane		PO:0025034 - leaf 
25543	AGC23	OsAGC23	AGC PROTEIN KINASE 23	AGC protein kinase 23	AGC PROTEIN KINASE 23		12		 Biochemical character	Os12g0149700	LOC_Os12g05394.1				GO:0005886 - plasma membrane, GO:0012505 - endomembrane system, GO:0004672 - protein kinase activity, GO:0005634 - nucleus, GO:0005737 - cytoplasm, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation		
25544	AGC24	OsAGC24	AGC PROTEIN KINASE 24	AGC protein kinase 24	AGC PROTEIN KINASE 24		12		 Biochemical character	Os12g0480200	LOC_Os12g29580.2, LOC_Os12g29580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0006468 - protein amino acid phosphorylation, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0004672 - protein kinase activity		
25545	CG5	OsCG5	CHALKY GRAIN 5	Chalky Grain 5			5	TO:0001109: grain color trait.	 Tolerance and resistance - Stress tolerance,  Seed - Morphological traits,  Seed - Physiological traits	Os05g0487100	LOC_Os05g40850.1				GO:0010431 - seed maturation, GO:0009408 - response to heat	TO:0002661 - seed maturation, TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000259 - heat tolerance, TO:0000266 - chalky endosperm	PO:0007632 - seed maturation stage , PO:0009010 - seed , PO:0025196 - basal endosperm transfer layer 
25546	MYB3R1L	OsMYB3R1-L, MYB3R1-L	R1R2R3-MYB TRANSCRIPTION FACTOR 1-LIKE	R1R2R3-MYB Transcription Factor 1-like, OsMYB3R1-like, MYB3R1-like	R1R2R3-MYB TRANSCRIPTION FACTOR 1-LIKE		1	AJ495793. GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific.	 Other	Os01g0229000 	LOC_Os01g12860.1				GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0005634 - nucleus		
25547	MAP65-3.1	OsMAP65-3.1	MICROTUBULE-ASSOCIATED PROTEIN 65-3.1	MT-associated protein 65-3.1, microtubule-associated protein 65-3.1	MICROTUBULE-ASSOCIATED PROTEIN 65-3.1	osmap65-3.1	1	close homology to AtMAP65-3.	 Character as QTL - Plant growth activity	Os01g0685900	LOC_Os01g49200.1				GO:0005737 - cytoplasm, GO:0008017 - microtubule binding, GO:0000278 - mitotic cell cycle, GO:0000910 - cytokinesis, GO:0005819 - spindle, GO:0000919 - cell plate formation, GO:0000911 - cytokinesis by cell plate formation, GO:0000226 - microtubule cytoskeleton organization	TO:0000357 - growth and development trait	PO:0025281 - pollen , PO:0009051 - spikelet , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0009066 - anther 
25548	MAP65-3.2	OsMAP65-3.2	MICROTUBULE-ASSOCIATED PROTEIN 65-3.2	MT-associated protein 65-3.2, microtubule-associated protein 65-3.2	MICROTUBULE-ASSOCIATED PROTEIN 65-3.2	osmap65-3.2, osmap65-3.2a, osmap65-3.2b	5	close homology to AtMAP65-3.		Os05g0552900	LOC_Os05g47970.1				GO:0000226 - microtubule cytoskeleton organization, GO:0005819 - spindle, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding		
25549	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			2			Os02g0126300	LOC_Os02g03400.1				GO:0005819 - spindle, GO:0000226 - microtubule cytoskeleton organization, GO:0008017 - microtubule binding, GO:0005737 - cytoplasm		
25550	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			3			Os03g0719000	LOC_Os03g50970.1				GO:0008017 - microtubule binding, GO:0005737 - cytoplasm, GO:0000226 - microtubule cytoskeleton organization, GO:0005819 - spindle		
25551	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			9			Os09g0450300	LOC_Os09g27700.2, LOC_Os09g27700.3, LOC_Os09g27700.1				GO:0005819 - spindle, GO:0005737 - cytoplasm, GO:0000226 - microtubule cytoskeleton organization, GO:0008017 - microtubule binding		
25552	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			5			Os05g0409400	LOC_Os05g33890.1				GO:0005819 - spindle, GO:0000226 - microtubule cytoskeleton organization, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding		
25553	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			6			Os06g0308300	LOC_Os06g20370.1				GO:0005819 - spindle, GO:0000911 - cytokinesis by cell plate formation, GO:0000226 - microtubule cytoskeleton organization, GO:0008017 - microtubule binding, GO:0005737 - cytoplasm		
25554	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			2			Os02g0720200	LOC_Os02g48830.1				GO:0005819 - spindle, GO:0000226 - microtubule cytoskeleton organization, GO:0000911 - cytokinesis by cell plate formation, GO:0005737 - cytoplasm, GO:0008017 - microtubule binding		
25555	_		_	microtubule-associated protein 65 family, MT-associated protein 65 family, MAP65 gene family			6			Os06g0611000	LOC_Os06g40840.1				GO:0005737 - cytoplasm, GO:0000911 - cytokinesis by cell plate formation, GO:0000226 - microtubule cytoskeleton organization, GO:0008017 - microtubule binding, GO:0005819 - spindle		
25556	_		_				1	a target gene of OsHOX24.	 Tolerance and resistance - Stress tolerance	Os01g0793800	LOC_Os01g58130.1				GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation	TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity	
25557	CYP71Z30	OsCYP71Z30	CYTOCHROME P450 71Z30	cytochrome P450 71Z30	CYTOCHROME P450 71Z30		7		 Biochemical character	Os07g0218900	LOC_Os07g11890.1				GO:0020037 - heme binding, GO:0016020 - membrane, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
25558	CYP71Z22	OsCYP71Z22	CYTOCHROME P450 71Z22	cytochrome P450 71Z22	CYTOCHROME P450 71Z22		7	a C10 oxidase.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Biochemical character	Os07g0220200	LOC_Os07g11970.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0009411 - response to UV, GO:0050832 - defense response to fungus, GO:0009753 - response to jasmonic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0020037 - heme binding, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0002669 - diterpenoid phytoalexin content, TO:0000160 - UV light sensitivity, TO:0000074 - blast disease, TO:0000172 - jasmonic acid sensitivity	
25559	_		_	glycosyl hydrolase			5		 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0248200	LOC_Os05g15920.1				GO:0005576 - extracellular region, GO:0004568 - chitinase activity, GO:0050832 - defense response to fungus, GO:0005975 - carbohydrate metabolic process	TO:0000468 - leaf blast disease resistance	
25560	TF2	OsTF2	TRANSCRIPTION FACTOR TF2	transcription factor TF2	TRANSCRIPTION FACTOR TF2		2		 Tolerance and resistance - Disease resistance,  Other	Os02g0702100	LOC_Os02g47370.1				GO:0043565 - sequence-specific DNA binding, GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0050832 - defense response to fungus	TO:0000468 - leaf blast disease resistance	
25561	_	CYP72A1, OsCYP72A1	_	cytochrome P450 72A1			1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0627800	LOC_Os01g43740.1				GO:0050832 - defense response to fungus, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane	TO:0000477 - panicle blast disease resistance	
25562	LBD39	OsLBD39	LATERAL ORGAN BOUNDARIES DOMAIN 39	lateral organ boundaries domain protein 39, LBD-CONTAINING PROTEIN 39	LATERAL ORGAN BOUNDARIES DOMAIN PROTEIN 39		7	GO:1901698: response to nitrogen compound. 	 Tolerance and resistance - Stress tolerance	Os07g0589000	LOC_Os07g40000.1				GO:0010468 - regulation of gene expression, GO:0045892 - negative regulation of transcription, DNA-dependent	TO:0000011 - nitrogen sensitivity	
25563	TWIFB1	OsTWIFB1	TRANSPOSABLE ELEMENT TWIFB1	transposable element TWIFB1				a hAT DNA transposon. NCBI nucleotide: 7LJY_B (B dENE construct), 7JNH_B (Chain B, Core double ENE RNA (Xtal construct) from Oryza sativa transposon,Core double ENE RNA (Xtal construct) from Oryza sativa transposon). Protein Data Bank ID: 7JNH (Crystal structure of a double-ENE RNA stability element in complex with a 28-mer poly(A) RNA).	 Other								
25564	HDA707	OsHDA707	HISTONE DEACETYLASE 707	histone deacetylase 707	HISTONE DEACETYLASE 707		1	RPD/HDA1 family.		Os01g0223100	LOC_Os01g12310.1						
25565	HDA709	OsHDA709	HISTONE DEACETYLASE 709	histone deacetylase 709	HISTONE DEACETYLASE 709		11	RPD/HDA1 family.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Other	Os11g0200000	LOC_Os11g09370.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0006325 - chromatin organization, GO:0016575 - histone deacetylation, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0004407 - histone deacetylase activity	TO:0000163 - auxin sensitivity, TO:0006001 - salt tolerance	
25566	HDA712	OsHDA712	HISTONE DEACETYLASE 712	histone deacetylase 712	HISTONE DEACETYLASE 712		5	RPD/HDA1 family.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0440250	LOC_Os05g36920.1				GO:0005737 - cytoplasm, GO:0009409 - response to cold, GO:0046872 - metal ion binding, GO:0009414 - response to water deprivation, GO:0004407 - histone deacetylase activity, GO:0016787 - hydrolase activity	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
25567	HDA713	OsHDA713	HISTONE DEACETYLASE 713	histone deacetylase 713	HISTONE DEACETYLASE 713		7	RPD/HDA1 family.	 Biochemical character,  Tolerance and resistance - Stress tolerance,  Other	Os07g0602200	LOC_Os07g41090.1, LOC_Os07g41090.3				GO:0009651 - response to salt stress, GO:0000122 - negative regulation of transcription from RNA polymerase II promoter, GO:0016575 - histone deacetylation, GO:0000118 - histone deacetylase complex, GO:0046872 - metal ion binding, GO:0004407 - histone deacetylase activity, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	
25568	HDA716	OsHDA716	HISTONE DEACETYLASE 716	histone deacetylase 716	HISTONE DEACETYLASE 716		5	RPD/HDA1 family.	 Biochemical character	Os05g0440300	LOC_Os05g36930.2, LOC_Os05g36930.1				GO:0004407 - histone deacetylase activity, GO:0005737 - cytoplasm, GO:0016787 - hydrolase activity, GO:0046872 - metal ion binding		PO:0025034 - leaf 
25569	UGT2	OsUGT2	UDP-GALACTOSE TRANSPORTER 2	UDP-galactose transporter 2	UDP-GALACTOSE TRANSPORTER 2		7		 Biochemical character	Os07g0581000	LOC_Os07g39280.1				GO:0016020 - membrane, GO:0005794 - Golgi apparatus, GO:0005459 - UDP-galactose transmembrane transporter activity, GO:0005338 - nucleotide-sugar transmembrane transporter activity, GO:0015297 - antiporter activity		
25570	UGT3	OsUGT3	UDP-GALACTOSE TRANSPORTER 3	UDP-galactose transporter 3	UDP-GALACTOSE TRANSPORTER 3		8		 Biochemical character	Os08g0104900	LOC_Os08g01410.1				GO:0005794 - Golgi apparatus, GO:0005460 - UDP-glucose transmembrane transporter activity, GO:0016020 - membrane, GO:0015297 - antiporter activity, GO:0005459 - UDP-galactose transmembrane transporter activity		
25571	_	OsWD	_	WD-repeat protein			1			Os01g0858000	LOC_Os01g63910.2, LOC_Os01g63910.1				GO:0003677 - DNA binding, GO:0000127 - transcription factor TFIIIC complex, GO:0006383 - transcription from RNA polymerase III promoter		
25572	_	OsbHLH	_	basic helix-loop-helix protein			1	GO:0090575: RNA polymerase II transcription regulator complex. GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific. GO:0000977: RNA polymerase II transcription regulatory region sequence-specific DNA binding.	 Other	Os01g0108600 	LOC_Os01g01870.1				GO:0046983 - protein dimerization activity, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
25573	UPL7	OsUPL7, HECT2, OsHECT2	UBIQUITIN PROTEIN LIGASE 7	Ubiquitin Protein Ligase 7, HECT-type E3 ubiquitin ligase 2	UBIQUITIN PROTEIN LIGASE 7		3	XP_015632605.1 GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os03g0683900	LOC_Os03g47960.1, LOC_Os03g47949.1				GO:0000209 - protein polyubiquitination, GO:0006511 - ubiquitin-dependent protein catabolic process		
25574	_	OsbZIP18	_	b-ZIP transcription factor 18			2		 Other,  Tolerance and resistance - Stress tolerance	Os02g0202950	LOC_Os02g10860.1				GO:0002229 - defense response to oomycetes, GO:0009408 - response to heat, GO:0042742 - defense response to bacterium, GO:0004675 - transmembrane receptor protein serine/threonine kinase activity, GO:0005886 - plasma membrane, GO:0030246 - carbohydrate binding	TO:0000259 - heat tolerance	
25575	UVR8A	OsUVR8a, UVR8a, OsRCC1-1, RCC1-1, OsGEF10, GEF10	UV RESISTANCE LOCUS 8A	UV resistance locus 8a, Guanine nucleotide exchange factor 10, RCC repeat protein 1-1, regulators of chromosomal condensation repeat protein 1-1	RCC REPEAT PROTEIN 1-1	Osuvr8a	2	RanGEF family. RCC1 domain containing protein. GO:0090351: seedling development.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity	Os02g0554100  	LOC_Os02g34860.1				GO:0042803 - protein homodimerization activity, GO:0009643 - photosynthetic acclimation, GO:0009640 - photomorphogenesis, GO:0009881 - photoreceptor activity, GO:0005634 - nucleus, GO:0010224 - response to UV-B	TO:0000357 - growth and development trait, TO:0000601 - UV-B light sensitivity	
25576	CYP76M17	OsCYP76M17, OsTyM/Hq6, TyM/Hq6, OsCYP76-8, CYP76-8	P-450 76M17	Cytochrome P450 76M17	CYTOCHROME P450 76M17		6	Q69X58. a candidate gene for qTyM6 and qTYH6 (QTL for resistance to lodging during typhoon Maysak and Haishen on chromosome 6). OsCYP76-8 in Zhou et al. 2023.  GO:0036202: ent-cassa-12,15-diene 11-hydroxylase activity. 	 Tolerance and resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0599200	LOC_Os06g39780.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0016102 - diterpenoid biosynthetic process, GO:0006952 - defense response, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016491 - oxidoreductase activity, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0051502 - diterpene phytoalexin biosynthetic process	TO:0000114 - flooding related trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance	
25577	OBP	OsOBP	OXYSTEROL-BINDING PROTEIN	oxysterol-binding protein	OXYSTEROL-BINDING PROTEIN		3		 Biochemical character	Os03g0274000	LOC_Os03g16690.1				GO:0008289 - lipid binding, GO:0005829 - cytosol, GO:0016020 - membrane, GO:0043231 - intracellular membrane-bounded organelle, GO:0015248 - sterol transporter activity, GO:0032934 - sterol binding		
25578	NBSGO35	OsNBSGO35, RPP13	_				11	a type of NBS-LRR protein.  target gene of miR395l, miR167c, miR21180. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance	Os11g0668100	LOC_Os11g44580.1				GO:0043531 - ADP binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25579	RPP13L4	OsRPP13L4	RRP13-LIKE PROTEIN 4	disease resistance RPP13-like protein 4, RRP-13 like protein 4	RRP13-LIKE PROTEIN 4		1	disease resistance protein domain-containing protein. BGIOSGA005189 (indica). 	 Tolerance and resistance - Insect resistance	Os01g0953400	LOC_Os01g72410.1				GO:0002215 - defense response to nematode, GO:0006952 - defense response	TO:0000384 - nematode damage resistance	
25580	_		_	NB-ARC domain-containing protein			12	BGIOSGA036197 (indica). 	 Tolerance and resistance - Insect resistance	Os12g0481700	LOC_Os12g29710.1				GO:0002215 - defense response to nematode, GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0005524 - ATP binding, GO:0051707 - response to other organism	TO:0000384 - nematode damage resistance	
25581	_		_	NBS-LRR resistance protein homoloue			6	BGIOSGA020562 (indica). 	 Tolerance and resistance - Insect resistance	Os06g0707350	LOC_Os06g49350.1				GO:0006952 - defense response, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
25582	FWL4	OsFWL, FWL, OsFWL4/OsPCR6, OsFWL4, OsPCR6, PCR6	FW2.2-LIKE 4	FW2.2-like, plant cadmium resistance 6	FW2.2-LIKE 4		3			Os03g0830400	LOC_Os03g61490.1						
25583	_	OsFWL, FWL	_	FW2.2-like			4			Os04g0461600	LOC_Os04g38790.1						
25584	_		_	inducer of meiosis 4 antisense transcript, OsIME4 antisense transcript, OsIME4 non-coding antisense transcript			2	OsIME4 (Os02g0672600) antisense transcript.	 Reproductive organ - Pollination, fertilization, fertility - Meiosis						GO:0017148 - negative regulation of translation, GO:0051446 - positive regulation of meiotic cell cycle, GO:0045892 - negative regulation of transcription, DNA-dependent, GO:0031536 - positive regulation of exit from mitosis	TO:0000729 - meiotic cell cycle trait	PO:0006014 - male archesporial cell , PO:0020003 - plant ovule , PO:0009066 - anther , PO:0006015 - female archesporial cell 
25585	CYP72A21	OsCYP72A21	CYTOCHROME P450 72A21	cytochrome P450 72A21	CYTOCHROME P450 72A21		1	AB237166.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os01g0627900	LOC_Os01g43750.1				GO:0009635 - response to herbicide, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000058 - herbicide sensitivity	
25586	DNR1	OsDNR1	DULL NITROGEN RESPONSE 1	DULL NITROGEN RESPONSE1		dnr1, DNR1-indica, DNR1-IRAP, DNR1-HJX74	1	TO:0020100: nitrate uptake. GO:1901698: response to nitrogen compound. TO:0000739: shoot axis morphology trait. TO:0020106: Indole-3-acetic acid content.	 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Biochemical character,  Vegetative organ - Culm,  Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0178000	LOC_Os01g08270.4, LOC_Os01g08270.1				GO:0048527 - lateral root development, GO:0010311 - lateral root formation, GO:0019740 - nitrogen utilization, GO:0042128 - nitrate assimilation, GO:0010167 - response to nitrate, GO:0010601 - positive regulation of auxin biosynthetic process, GO:0051173 - positive regulation of nitrogen compound metabolic process, GO:0015706 - nitrate transport, GO:0010252 - auxin homeostasis	TO:0001012 - lateral root length, TO:0000396 - grain yield, TO:0000011 - nitrogen sensitivity, TO:0002672 - auxin content, TO:0000207 - plant height, TO:0000346 - tiller number, TO:0002674 - tryptophan content, TO:0001013 - lateral root number, TO:0000371 - yield trait	
25587	PARG	OsPARG	POLY ADP-RIBOSE GLYCOHYDROLASE	PAR glycohydrolase, Poly ADP-ribose glycohydrolase	POLY ADP-RIBOSE GLYCOHYDROLASE		3	GO:1990966: ATP generation from poly-ADP-D-ribose.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0843900	LOC_Os03g62680.1				GO:0005737 - cytoplasm, GO:0004649 - poly(ADP-ribose) glycohydrolase activity, GO:0009225 - nucleotide-sugar metabolic process, GO:0031056 - regulation of histone modification, GO:0006974 - response to DNA damage stimulus, GO:0006282 - regulation of DNA repair, GO:0005975 - carbohydrate metabolic process, GO:0005634 - nucleus		
25588	AAT3	OsAAT3	ASPARTATE AMINOTRANSFERASE 3	Aspartate aminotransferase 3	ASPARTATE AMINOTRANSFERASE 3		6		 Biochemical character	Os06g0548000 	LOC_Os06g35540.1				GO:0005739 - mitochondrion, GO:0030170 - pyridoxal phosphate binding, GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity, GO:0009058 - biosynthetic process, GO:0006520 - cellular amino acid metabolic process		
25589	PLIM2B	OsPLIM2b, PLIM2b	POLLEN-SPECIFIC LIM DOMAIN PROTEIN 2B	pollen-specific LIM domain protein 2b	POLLEN-SPECIFIC LIM DOMAIN PROTEIN 2B		4	Q7F9R9.		Os04g0532500	LOC_Os04g45010.1				GO:0015629 - actin cytoskeleton, GO:0051017 - actin filament bundle formation, GO:0046872 - metal ion binding, GO:0051015 - actin filament binding, GO:0005886 - plasma membrane		PO:0025281 - pollen 
25590	EXPL2	Os-EXPL2, OsEXPL2	EXPANSIN-LIKE 2	expansin-like 2	EXPANSIN-LIKE 2		10	Q7XCL0.		Os10g0542400	LOC_Os10g39640.1				GO:0005576 - extracellular region, GO:0009653 - anatomical structure morphogenesis		
25591	MEK19	OsMEK19	MAPK/ERK KINASE 19	MAPK/ERK kinase 19	MAPK/ERK KINASE 19		5		 Biochemical character	Os05g0545400	LOC_Os05g46760.1				GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0004672 - protein kinase activity		
25592	DEF3	OsDEF3	DEFENSIN 3	defensin 3	DEFENSIN 3		2		 Tolerance and resistance	Os02g0172000	LOC_Os02g07600.1				GO:0006952 - defense response		
25593	_	DEFL2, OsDEFL2	_	defensin-like 2			7				LOC_Os07g01700.1						
25594	_	DEFL3, OsDEFL3	_	defensin-like 3			12		 Tolerance and resistance	Os12g0612000	LOC_Os12g41790.1				GO:0006952 - defense response		
25595	_	DEFL4, OsDEFL4	_	defensin-like 4			1			Os01g0829500	LOC_Os01g61360.1						
25596	DEFL6	OsDEFL6	DEFENSIN-LIKE 6	defensin-like 6	DEFENSIN-LIKE 6		10			Os10g0516900	LOC_Os10g37290.1						
25597	DEFL7	OsDEFL7	DEFENSIN-LIKE 7	defensin-like 7	DEFENSIN-LIKE 7		1		 Tolerance and resistance - Disease resistance	Os01g0584500	LOC_Os01g40220.1				GO:0050832 - defense response to fungus, GO:0005576 - extracellular region		
25598	_	DEFL8, OsDEFL8	_	defensin-like 8			6		 Tolerance and resistance - Disease resistance	Os06g0335600	LOC_Os06g22880.1				GO:0050832 - defense response to fungus, GO:0005576 - extracellular region		
25599	DEFL12	OsDEFL12	DEFENSIN-LIKE 12	defensin-like 12	DEFENSIN-LIKE 12		6				LOC_Os06g48690.1						
25600	DEFL14	OsDEFL14	DEFENSIN-LIKE 14	defensin-like 14	DEFENSIN-LIKE 14		9				LOC_Os09g11790.1						
25601	DEFL16	OsDEFL16	DEFENSIN-LIKE 16	defensin-like 16	DEFENSIN-LIKE 16		12				LOC_Os12g06750.1						
25602	DEFL17	OsDEFL17	DEFENSIN-LIKE 17	defensin-like 17	DEFENSIN-LIKE 17		12				LOC_Os12g06760.1						
25603	DEFL18	OsDEFL18	DEFENSIN-LIKE 18	defensin-like 18	DEFENSIN-LIKE 18		12				LOC_Os12g12220.1						
25604	DEFL21	OsDEFL21	DEFENSIN-LIKE 21	defensin-like 21	DEFENSIN-LIKE 21		6			Os06g0700100	LOC_Os06g48660.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25605	DEFL25	OsDEFL25	DEFENSIN-LIKE 25	defensin-like 25	DEFENSIN-LIKE 25		11				LOC_Os11g42530.1						
25606	DEFL27	OsDEFL27	DEFENSIN-LIKE 27	defensin-like 27	DEFENSIN-LIKE 27		6				LOC_Os06g45320.1						
25607	DEFL28	OsDEFL28	DEFENSIN-LIKE 28	defensin-like 28	DEFENSIN-LIKE 28		11			Os11g0185100	LOC_Os11g08220.1						
25608	DEFL29	OsDEFL29	DEFENSIN-LIKE 29	defensin-like 29	DEFENSIN-LIKE 29		11			Os11g0185400	LOC_Os11g08240.1						
25609	DEFL30	OsDEFL30	DEFENSIN-LIKE 30	defensin-like 30	DEFENSIN-LIKE 30		11				LOC_Os11g08250.1						
25610	DEFL31	OsDEFL31	DEFENSIN-LIKE 31	defensin-like 31	DEFENSIN-LIKE 31		11				LOC_Os11g08260.1						
25611	DEFL32	OsDEFL32	DEFENSIN-LIKE 32	defensin-like 32	DEFENSIN-LIKE 32		11				LOC_Os11g08270.1						
25612	DEFL33	OsDEFL33	DEFENSIN-LIKE 33	defensin-like 33	DEFENSIN-LIKE 33		11				LOC_Os11g08280.1						
25613	DEFL34	OsDEFL34	DEFENSIN-LIKE 34	defensin-like 34	DEFENSIN-LIKE 34		11			Os11g0644900	LOC_Os11g42520.1						
25614	DEFL35	OsDEFL35	DEFENSIN-LIKE 35	defensin-like 35	DEFENSIN-LIKE 35		1			Os01g0202000	LOC_Os01g10550.1						
25615	DEFL38	OsDEFL38	DEFENSIN-LIKE 38	defensin-like 38	DEFENSIN-LIKE 38		2				LOC_Os02g56870.1						
25616	DEFL40	OsDEFL40	DEFENSIN-LIKE 40	defensin-like 40	DEFENSIN-LIKE 40		3				LOC_Os03g56682.1						
25617	DEFL44	OsDEFL44	DEFENSIN-LIKE 44	defensin-like 44	DEFENSIN-LIKE 44		11				LOC_Os11g47269.1						
25618	DEFL45	OsDEFL45	DEFENSIN-LIKE 45	defensin-like 45	DEFENSIN-LIKE 45		11			Os11g0184400	LOC_Os11g08170.1						
25619	DEFL47	OsDEFL47	DEFENSIN-LIKE 47	defensin-like 47	DEFENSIN-LIKE 47		9				LOC_Os09g02160.1						
25620	DEFL49	OsDEFL49	DEFENSIN-LIKE 49	defensin-like 49	DEFENSIN-LIKE 49		4			Os04g0381500	LOC_Os04g31250.1				GO:0016020 - membrane		
25621	DEFL50	OsDEFL50	DEFENSIN-LIKE 50	defensin-like 50	DEFENSIN-LIKE 50		4				LOC_Os04g15740.1						
25622	DEFL55	OsDEFL55	DEFENSIN-LIKE 55	defensin-like 55	DEFENSIN-LIKE 55		8				LOC_Os08g15545.1						
25623	DEFL56	OsDEFL56	DEFENSIN-LIKE 56	defensin-like 56	DEFENSIN-LIKE 56		8				LOC_Os08g15550.1						
25624	DEFL69	OsDEFL69	DEFENSIN-LIKE 69	defensin-like 69	DEFENSIN-LIKE 69		10				LOC_Os10g20540.1						
25625	DEFL70	OsDEFL70	DEFENSIN-LIKE 70	defensin-like 70	DEFENSIN-LIKE 70		10			Os10g0345900	LOC_Os10g20550.1						
25626	DEFL71	OsDEFL71	DEFENSIN-LIKE 71	defensin-like 71	DEFENSIN-LIKE 71		2		 Tolerance and resistance - Disease resistance	Os02g0776000	LOC_Os02g53590.1				GO:0050832 - defense response to fungus, GO:0031640 - killing of cells of another organism		
25627	DEFL72	OsDEFL72	DEFENSIN-LIKE 72	defensin-like 72	DEFENSIN-LIKE 72		2				LOC_Os02g20130.1						
25628	DEFL73	OsDEFL73	DEFENSIN-LIKE 73	defensin-like 73	DEFENSIN-LIKE 73		2		 Tolerance and resistance - Disease resistance	Os02g0727600	LOC_Os02g49540.1				GO:0031640 - killing of cells of another organism, GO:0050832 - defense response to fungus		
25629	DEFL74	OsDEFL74	DEFENSIN-LIKE 74	defensin-like 74	DEFENSIN-LIKE 74		2				LOC_Os02g53570.1						
25630	DEFL75	OsDEFL75	DEFENSIN-LIKE 75	defensin-like 75	DEFENSIN-LIKE 75		2		 Tolerance and resistance - Disease resistance	Os02g0776200	LOC_Os02g53600.1				GO:0031640 - killing of cells of another organism, GO:0050832 - defense response to fungus		
25631	DEFL78	OsDEFL78	DEFENSIN-LIKE 78	defensin-like 78	DEFENSIN-LIKE 78		2				LOC_Os02g07440.1						
25632	DEFL79	OsDEFL79	DEFENSIN-LIKE 79	defensin-like 79	DEFENSIN-LIKE 79		11				LOC_Os11g34990.1						
25633	DEFL80	OsDEFL80	DEFENSIN-LIKE 80	defensin-like 80	DEFENSIN-LIKE 80		11				LOC_Os11g39910.1						
25634	DEFL81	OsDEFL81	DEFENSIN-LIKE 81	defensin-like 81	DEFENSIN-LIKE 81		10				LOC_Os10g20560.1						
25635	BC16	OsBC16	BRITTLE CULM 16	brittle culm16		bc16		a membrane-bound O-acyltransferase (MBOAT). TO:0000993: cellulose content. TO:0000756: stem internode morphology trait.	 Vegetative organ - Culm						GO:0009832 - plant-type cell wall biogenesis, GO:0044038 - cell wall macromolecule biosynthetic process, GO:0052324 - cell wall cellulose biosynthetic process, GO:0016255 - attachment of GPI anchor to protein, GO:0009664 - plant-type cell wall organization, GO:0052386 - cell wall thickening, GO:0005794 - Golgi apparatus, GO:0005783 - endoplasmic reticulum, GO:0006505 - GPI anchor metabolic process	TO:0000200 - brittle culm	
25636	_		_				6	a target gene of OsHOX24. EU723765.	 Tolerance and resistance - Stress tolerance	Os06g0133500	LOC_Os06g04240.1				GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation	TO:0000276 - drought tolerance, TO:0000507 - osmotic adjustment capacity	
25637	_		_				8	a target gene of OsHOX24.	 Tolerance and resistance - Stress tolerance	Os08g0205800	LOC_Os08g10500.1				GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation	TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance	
25638	_		_				6	a target gene of OsHOX24.	 Tolerance and resistance - Stress tolerance	Os06g0646100	LOC_Os06g43810.1				GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation	TO:0000507 - osmotic adjustment capacity, TO:0000276 - drought tolerance	
25639	ZIP13	OsZIP13, OsZIP8, ZIP8	ZRT/IRT-LIKE PROTEIN 13	ZRT/IRT-like protein 13, zinc transporter 13, ZRT-IRT-related protein 13, ZIP transporter 13, Zinc- and iron-regulating transport-like protein 8, Zn- and Fe-regulating transport-like protein 8	ZRT/IRT-LIKE PROTEIN 13		2	OsZIP8 in Zeng et al. 2024. GO: 0120127: response to zinc ion starvation.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0196000	LOC_Os02g10230.1				GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0046873 - metal ion transmembrane transporter activity, GO:0010269 - response to selenium ion, GO:0010042 - response to manganese ion, GO:0016020 - membrane	TO:0000351 - zinc sensitivity, TO:0000032 - selenium sensitivity, TO:0000073 - manganese sensitivity	
25640	ZIP14	OsZIP14	ZRT/IRT-LIKE PROTEIN 14	ZRT/IRT-like protein 14, zinc transporter 14, ZRT-IRT-related protein 14, ZIP transporter 14, Zinc- and iron-regulating transport-like protein 14, Zn- and Fe-regulating transport-like protein 14	ZRT/IRT-LIKE PROTEIN 14		8	GO: 0120127: response to zinc ion starvation. GO:0071577: zinc ion transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0467400	LOC_Os08g36420.4, LOC_Os08g36420.5, LOC_Os08g36420.3, LOC_Os08g36420.2, LOC_Os08g36420.1				GO:0006882 - cellular zinc ion homeostasis, GO:0016020 - membrane, GO:0010269 - response to selenium ion, GO:0010042 - response to manganese ion, GO:0046873 - metal ion transmembrane transporter activity, GO:0005886 - plasma membrane, GO:0046686 - response to cadmium ion, GO:0005385 - zinc ion transmembrane transporter activity	TO:0000073 - manganese sensitivity, TO:0000032 - selenium sensitivity, TO:0000351 - zinc sensitivity	
25641	ZIP16	OsZIP16	ZRT/IRT-LIKE PROTEIN 16	ZRT/IRT-like protein 16, zinc transporter 16, ZRT-IRT-related protein 16, ZIP transporter 16, Zinc- and iron-regulating transport-like protein 16, Zn- and Fe-regulating transport-like protein 16	ZRT/IRT-LIKE PROTEIN 16		8	GO: 0120127: response to zinc ion starvation. GO:0071577: zinc ion transmembrane transport.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0100200	LOC_Os08g01030.1				GO:0016020 - membrane, GO:0046873 - metal ion transmembrane transporter activity, GO:0046686 - response to cadmium ion, GO:0005886 - plasma membrane, GO:0005385 - zinc ion transmembrane transporter activity, GO:0010269 - response to selenium ion, GO:0010042 - response to manganese ion	TO:0000032 - selenium sensitivity, TO:0000351 - zinc sensitivity, TO:0000073 - manganese sensitivity	
25642	_		_	beta-glucosidase			2	BGIOSGA007188 (indica).	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0131400	LOC_Os02g03870.1				GO:0005576 - extracellular region, GO:0009251 - glucan catabolic process, GO:0008422 - beta-glucosidase activity, GO:0009414 - response to water deprivation, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000276 - drought tolerance	
25643	_		_				8	EF-hand domain-containing protein. BGIOSGA028946 (indica).	 Tolerance and resistance - Insect resistance	Os08g0502600	LOC_Os08g39290.1				GO:0002215 - defense response to nematode, GO:0009624 - response to nematode, GO:0005509 - calcium ion binding	TO:0000384 - nematode damage resistance	
25644	_		_				1	uncharacterized protein. BGIOSGA033986 (indica).	 Tolerance and resistance - Insect resistance	Os01g0618300	LOC_Os01g43110.1				GO:0016020 - membrane, GO:0009624 - response to nematode, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
25645	_		_				8	uncharacterized protein. BGIOSGA028090 (indica).	 Tolerance and resistance - Insect resistance	Os08g0178500	LOC_Os08g08090.1				GO:0009624 - response to nematode, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
25646	_		_	probable calcium-binding protein CML10			1	BGIOSGA005163, BGIOSGA005164 (indica).	 Tolerance and resistance - Insect resistance	Os01g0949300	LOC_Os01g72080.1				GO:0005509 - calcium ion binding, GO:0009624 - response to nematode, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
25647	RPM1	OsRPM1, RPM-1	DISEASE RESISTANCE PROTEIN RPM1 	disease resistance protein RPM1	DISEASE RESISTANCE PROTEIN RPM1 		11	BGIOSGA019279 (indica). 	 Tolerance and resistance - Insect resistance	Os11g0606500	LOC_Os11g39320.1				GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0002215 - defense response to nematode, GO:0051707 - response to other organism, GO:0005524 - ATP binding	TO:0000384 - nematode damage resistance	
25648	_		_				11	BGIOSGA019278 (indica). disease resistance protein RPM1 isoform X1.	 Tolerance and resistance - Insect resistance	Os11g0606400	LOC_Os11g39310.1				GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
25649	RPS2	OsRPS2	DISEASE RESISTANCE PROTEIN RPS2 	disease resistance protein RPS2	DISEASE RESISTANCE PROTEIN RPS2 		11	BGIOSGA033773 (indica). 	 Tolerance and resistance - Insect resistance	Os11g0572301	LOC_Os11g36410.1				GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
25650	_		_	RGA2 like gene			11	BGIOSGA034867 (indica).	 Tolerance and resistance - Insect resistance	Os11g0160900	LOC_Os11g06210.1				GO:0043531 - ADP binding, GO:0005524 - ATP binding, GO:0009624 - response to nematode, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
25651	_		_	RGA2 like gene			4	BGIOSGA017180 (indica).	 Tolerance and resistance - Insect resistance	Os04g0626450	LOC_Os04g53496.1				GO:0009624 - response to nematode, GO:0002215 - defense response to nematode, GO:0043531 - ADP binding, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0051707 - response to other organism	TO:0000384 - nematode damage resistance	
25652	_		_	MYB transcription factor			5		 Coloration - Anthocyanin		LOC_Os05g37050.1				GO:0031540 - regulation of anthocyanin biosynthetic process		
25653	PHL7	OsPHL7	PHOSPHATE STARVATION RESPONSE-LIKE 7	MYB transcription factor	PHOSPHATE STARVATION RESPONSE-LIKE 7		6	a class II MYC-CC protein. a MYB-CC Transcription Factor. TO:0020102: phosphate content.	 Other,  Coloration - Anthocyanin,  Tolerance and resistance - Stress tolerance	Os06g0609500	LOC_Os06g40710.1				GO:0010966 - regulation of phosphate transport, GO:0031540 - regulation of anthocyanin biosynthetic process, GO:0009651 - response to salt stress, GO:0055062 - phosphate ion homeostasis, GO:0010106 - cellular response to iron ion starvation, GO:0042594 - response to starvation, GO:0060586 - multicellular organismal iron ion homeostasis, GO:0016036 - cellular response to phosphate starvation, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus	TO:0000516 - relative root length, TO:0002662 - leaf rolling tolerance, TO:0002664 - leaf yellowing tolerance, TO:0000102 - phosphorus sensitivity, TO:0000224 - iron sensitivity, TO:0006001 - salt tolerance, TO:0000084 - root number, TO:0001034 - relative plant height, TO:0001024 - phosphorus content	
25654	AZT3	OsAZT3	AZT PROTEIN 3	AZT protein 3, AZT-type monosaccharide transporter 3, monosaccharide transporter AZT3	AZT PROTEIN 3		3		 Biochemical character	Os03g0128932	LOC_Os03g03680.1				GO:0016020 - membrane, GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport		PO:0009005 - root 
25655	STP17	OsSTP17	SUGAR TRANSPORTER PROTEIN 17	sugar transporter protein 17, monosaccharide transporter STP17, STP protein 17	SUGAR TRANSPORTER PROTEIN 17		3		 Biochemical character	Os04g0453400	LOC_Os04g38026.1				GO:0015145 - monosaccharide transmembrane transporter activity, GO:0015293 - symporter activity, GO:0016020 - membrane		
25656	STP27	OsSTP27	SUGAR TRANSPORTER PROTEIN 27	sugar transporter protein 27, monosaccharide transporter STP27, STP protein 27	SUGAR TRANSPORTER PROTEIN 27		10		 Biochemical character	Os10g0561300	LOC_Os10g41190.1, LOC_Os10g41190.2				GO:0016020 - membrane, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0015293 - symporter activity		
25657	STP22	OsSTP22	SUGAR TRANSPORTER PROTEIN 22	sugar transporter protein 22, monosaccharide transporter STP22, STP protein 22	SUGAR TRANSPORTER PROTEIN 22		7		 Biochemical character	Os07g0206600	LOC_Os07g10590.1				GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity		
25658	INT3	OsINT3	INOSITOL TRANSPORTER 3	monosaccharide transporter INT3	INOSITOL TRANSPORTER 3		4		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os04g0511400	LOC_Os04g43210.3, LOC_Os04g43210.2, LOC_Os04g43210.1				GO:0005366 - myo-inositol:hydrogen symporter activity, GO:0055085 - transmembrane transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0009750 - response to fructose stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0015798 - myo-inositol transport, GO:0022857 - transmembrane transporter activity	TO:0000238 - growth media composition sensitivity, TO:0000615 - abscisic acid sensitivity	
25659	PLT1	OsPLT1	POLYOL/MONOSACCHARIDE TRANSPORTER 1	monosaccharide transporter PLT1, PLT protein 1	POLYOL/MONOSACCHARIDE TRANSPORTER 1		3		 Biochemical character	Os03g0197100	LOC_Os03g10090.1				GO:0016020 - membrane, GO:0008643 - carbohydrate transport, GO:0015293 - symporter activity		PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0025034 - leaf 
25660	PLT3	OsPLT3	POLYOL/MONOSACCHARIDE TRANSPORTER 3	monosaccharide transporter PLT3, PLT protein 3	POLYOL/MONOSACCHARIDE TRANSPORTER 3		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0360100	LOC_Os10g21590.1, LOC_Os10g21590.2				GO:0009751 - response to salicylic acid stimulus, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009005 - root 
25661	AZT2	OsAZT2	AZT PROTEIN 2	AZT protein 2, AZT-type monosaccharide transporter 2, monosaccharide transporter AZT2	AZT PROTEIN 2		2	CT835402.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0832100	LOC_Os02g58530.1				GO:0016020 - membrane, GO:0009744 - response to sucrose stimulus, GO:0015293 - symporter activity, GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport	TO:0000238 - growth media composition sensitivity	PO:0009005 - root , PO:0009006 - shoot system 
25662	AZT6	OsAZT6	AZT PROTEIN 6	AZT protein 6, AZT-type monosaccharide transporter 6, monosaccharide transporter AZT6	AZT PROTEIN 6		11		 Biochemical character	Os11g0620400	LOC_Os11g40540.2, LOC_Os11g40540.1				GO:0008643 - carbohydrate transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport		PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0020104 - leaf sheath 
25663	ERD1	OsERD1	ERD PROTEIN 1	ERD protein 1, ERD-type monosaccharide transporter 1, monosaccharide transporter ERD1	ERD PROTEIN 1		3		 Biochemical character	Os03g0363500	LOC_Os03g24860.1				GO:0016020 - membrane, GO:0055085 - transmembrane transport, GO:0051119 - sugar transmembrane transporter activity, GO:0015293 - symporter activity, GO:0022857 - transmembrane transporter activity		PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0020103 - flag leaf 
25664	ERD2	OsERD2	ERD PROTEIN 2	ERD protein 2, ERD-type monosaccharide transporter 2, monosaccharide transporter ERD2	ERD PROTEIN 2		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0363600	LOC_Os03g24870.1				GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0009749 - response to glucose stimulus, GO:0009744 - response to sucrose stimulus, GO:0051119 - sugar transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane, GO:0009751 - response to salicylic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0015293 - symporter activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009750 - response to fructose stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000238 - growth media composition sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0020103 - flag leaf 
25665	ERD3	OsERD3	ERD PROTEIN 3	ERD protein 3, ERD-type monosaccharide transporter 3, monosaccharide transporter ERD3	ERD PROTEIN 3		5		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os05g0567700	LOC_Os05g49260.1				GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0020103 - flag leaf 
25666	ERD4	OsERD4	ERD PROTEIN 4	ERD protein 4, ERD-type monosaccharide transporter 4, monosaccharide transporter ERD4	ERD PROTEIN 4		5		 Biochemical character	Os05g0567800	LOC_Os05g49270.1				GO:0055085 - transmembrane transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0022857 - transmembrane transporter activity, GO:0051119 - sugar transmembrane transporter activity		PO:0025034 - leaf , PO:0020103 - flag leaf , PO:0020104 - leaf sheath 
25667	ERD5	OsERD5	ERD PROTEIN 5	ERD protein 5, ERD-type monosaccharide transporter 5, monosaccharide transporter ERD5	ERD PROTEIN 5		5		 Biochemical character	Os05g0579000	LOC_Os05g50280.1				GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0051119 - sugar transmembrane transporter activity		
25668	ERD6	OsERD6	ERD PROTEIN 6	ERD protein 6, ERD-type monosaccharide transporter 6, monosaccharide transporter ERD6	ERD PROTEIN 6		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0643800	LOC_Os11g42430.1				GO:0051119 - sugar transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0009651 - response to salt stress, GO:0009744 - response to sucrose stimulus, GO:0009749 - response to glucose stimulus, GO:0009750 - response to fructose stimulus	TO:0000238 - growth media composition sensitivity, TO:0006001 - salt tolerance	
25669	INT1	OsINT1	INOSITOL TRANSPORTER 1	monosaccharide transporter INT1	INOSITOL TRANSPORTER 1		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0491700	LOC_Os04g41460.1				GO:0009750 - response to fructose stimulus, GO:0005366 - myo-inositol:hydrogen symporter activity, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0009705 - plant-type vacuole membrane, GO:0009744 - response to sucrose stimulus, GO:0009749 - response to glucose stimulus	TO:0000238 - growth media composition sensitivity	PO:0009010 - seed 
25670	INT2	OsINT2	INOSITOL TRANSPORTER 2	monosaccharide transporter INT2	INOSITOL TRANSPORTER 2		7		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os07g0151200	LOC_Os07g05640.1				GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0005366 - myo-inositol:hydrogen symporter activity, GO:0022857 - transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0015798 - myo-inositol transport, GO:0009651 - response to salt stress, GO:0009733 - response to auxin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus	TO:0000167 - cytokinin sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000163 - auxin sensitivity	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0020103 - flag leaf 
25671	STP9	OsSTP9	SUGAR TRANSPORT PROTEIN 9	Sugar transporter STP9, STP protein 9, monosaccharide transporter STP9	SUGAR TRANSPORT PROTEIN 9		2		 Biochemical character	Os02g0160400	LOC_Os02g06540.1				GO:0015145 - monosaccharide transmembrane transporter activity, GO:0015293 - symporter activity, GO:0016020 - membrane		
25672	STP10	OsSTP10	SUGAR TRANSPORT PROTEIN 10	Sugar transporter STP10, STP protein 10, monosaccharide transporter STP10	SUGAR TRANSPORT PROTEIN 10		2		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os02g0573500	LOC_Os02g36414.1				GO:0006970 - response to osmotic stress, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity	TO:0000095 - osmotic response sensitivity	PO:0009005 - root 
25673	STP11	OsSTP11	SUGAR TRANSPORT PROTEIN 11	Sugar transporter STP11, STP protein 11, monosaccharide transporter STP11	SUGAR TRANSPORT PROTEIN 11		2		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0574000	LOC_Os02g36440.1				GO:0009739 - response to gibberellin stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0006970 - response to osmotic stress	TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity, TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
25674	STP12	OsSTP12	SUGAR TRANSPORT PROTEIN 12	Sugar transporter STP12, STP protein 12, monosaccharide transporter STP12	SUGAR TRANSPORT PROTEIN 12		2		 Biochemical character	Os02g0574100	LOC_Os02g36450.1, LOC_Os02g36450.2				GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity		
25675	STP15	OsSTP15	SUGAR TRANSPORT PROTEIN 15	Sugar transporter STP15, STP protein 15, monosaccharide transporter STP15	SUGAR TRANSPORT PROTEIN 15		4		 Biochemical character	Os04g0453200	LOC_Os04g37990.1				GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0015145 - monosaccharide transmembrane transporter activity		
25676	STP16	OsSTP16	SUGAR TRANSPORT PROTEIN 16	Sugar transporter STP16, STP protein 16, monosaccharide transporter STP16	SUGAR TRANSPORT PROTEIN 16		4		 Biochemical character	Os04g0453300	LOC_Os04g38010.1				GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity		PO:0020104 - leaf sheath 
25677	STP19	OsSTP19	SUGAR TRANSPORT PROTEIN 19	Sugar transporter STP19, STP protein 19, monosaccharide transporter STP19	SUGAR TRANSPORT PROTEIN 19		6		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0141100	LOC_Os06g04900.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	
25678	STP20	OsSTP20	SUGAR TRANSPORT PROTEIN 20	Sugar transporter STP20, STP protein 20, monosaccharide transporter STP20	SUGAR TRANSPORT PROTEIN 20		7		 Biochemical character	Os07g0131200	LOC_Os07g03910.1				GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity	PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0025034 - leaf 
25679	STP21	OsSTP21	SUGAR TRANSPORT PROTEIN 21	Sugar transporter STP21, STP protein 21, monosaccharide transporter STP21	SUGAR TRANSPORT PROTEIN 21		7		 Biochemical character	Os07g0131600	LOC_Os07g03960.1				GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0016020 - membrane	TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000163 - auxin sensitivity	PO:0020104 - leaf sheath , PO:0020103 - flag leaf , PO:0025034 - leaf 
25680	STP23	OsSTP23	SUGAR TRANSPORT PROTEIN 23	Sugar transporter STP23, STP protein 23, monosaccharide transporter STP23	SUGAR TRANSPORT PROTEIN 23		9		 Biochemical character	Os09g0268300	LOC_Os09g09520.1				GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016020 - membrane, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0015293 - symporter activity		
25681	STP24	OsSTP24	SUGAR TRANSPORT PROTEIN 24	Sugar transporter STP24, STP protein 24, monosaccharide transporter STP24	SUGAR TRANSPORT PROTEIN 24		9		 Biochemical character	Os09g0297300	LOC_Os09g12590.1				GO:0015293 - symporter activity, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0016020 - membrane		
25682	STP26	OsSTP26	SUGAR TRANSPORT PROTEIN 26	Sugar transporter STP26, STP protein 26, monosaccharide transporter STP26	SUGAR TRANSPORT PROTEIN 26		9		 Biochemical character	Os09g0416200	LOC_Os09g24924.1				GO:0016020 - membrane, GO:0015145 - monosaccharide transmembrane transporter activity, GO:0015293 - symporter activity		PO:0009006 - shoot system , PO:0025034 - leaf , PO:0020103 - flag leaf 
25683	STP28	OsSTP28	SUGAR TRANSPORT PROTEIN 28	Sugar transporter STP28, STP protein 28, monosaccharide transporter STP28	SUGAR TRANSPORT PROTEIN 28		11		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0594000	LOC_Os11g38160.1				GO:0015145 - monosaccharide transmembrane transporter activity, GO:0015293 - symporter activity, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0016020 - membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity	PO:0009010 - seed 
25684	PGLCT3	OspGlcT3, pGlcT3	PLASTIDIC GLUCOSE TRANSLOCATOR 3	plastidic glucose translocator 3, pGlcT protein 3, monosaccharide transporter pGlcT3	PLASTIDIC GLUCOSE TRANSLOCATOR 3		9		 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0394500	LOC_Os09g23110.1				GO:0006970 - response to osmotic stress, GO:0009744 - response to sucrose stimulus, GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane, GO:0005351 - sugar:hydrogen symporter activity, GO:0009750 - response to fructose stimulus, GO:0008643 - carbohydrate transport, GO:0009749 - response to glucose stimulus	TO:0000238 - growth media composition sensitivity, TO:0000095 - osmotic response sensitivity	PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0020104 - leaf sheath 
25685	PGLCT4	OspGlcT4, pGlcT4	PLASTIDIC GLUCOSE TRANSLOCATOR 4	plastidic glucose translocator 4, pGlcT protein 4, monosaccharide transporter pGlcT4	PLASTIDIC GLUCOSE TRANSLOCATOR 4		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0452300	LOC_Os09g27900.1				GO:0009744 - response to sucrose stimulus, GO:0008643 - carbohydrate transport, GO:0005351 - sugar:hydrogen symporter activity, GO:0016020 - membrane, GO:0006970 - response to osmotic stress, GO:0022857 - transmembrane transporter activity, GO:0009749 - response to glucose stimulus, GO:0009750 - response to fructose stimulus	TO:0000238 - growth media composition sensitivity, TO:0000095 - osmotic response sensitivity	PO:0020103 - flag leaf , PO:0025034 - leaf , PO:0020104 - leaf sheath 
25686	PLT2	OsPLT2	POLYOL/MONOSACCHARIDE TRANSPORTER 2	monosaccharide transporter PLT2, PLT protein 2	POLYOL/MONOSACCHARIDE TRANSPORTER 2		1		 Biochemical character	Os01g0966900	LOC_Os01g73590.1				GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0015144 - carbohydrate transmembrane transporter activity		PO:0009006 - shoot system 
25687	PLT4	OsPLT4	POLYOL/MONOSACCHARIDE TRANSPORTER 4	monosaccharide transporter PLT4, PLT protein 4	POLYOL/MONOSACCHARIDE TRANSPORTER 4		4		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0529800	LOC_Os04g44750.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0008643 - carbohydrate transport, GO:0015293 - symporter activity, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
25688	PLT5	OsPLT5	POLYOL/MONOSACCHARIDE TRANSPORTER 5	monosaccharide transporter PLT5, PLT protein 5	POLYOL/MONOSACCHARIDE TRANSPORTER 5		7		 Biochemical character	Os07g0582400	LOC_Os07g39350.1				GO:0016020 - membrane, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0015293 - symporter activity		PO:0009006 - shoot system 
25689	PLT6	OsPLT6	POLYOL/MONOSACCHARIDE TRANSPORTER 6	monosaccharide transporter PLT6, PLT protein 6	POLYOL/MONOSACCHARIDE TRANSPORTER 6		7		 Biochemical character	Os07g0582500	LOC_Os07g39360.1				GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity		PO:0009005 - root 
25690	PLT7	OsPLT7	POLYOL/MONOSACCHARIDE TRANSPORTER 7	monosaccharide transporter PLT7, PLT protein 7	POLYOL/MONOSACCHARIDE TRANSPORTER 7		3		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0197200	LOC_Os03g10100.1				GO:0009744 - response to sucrose stimulus, GO:0009750 - response to fructose stimulus, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0008643 - carbohydrate transport, GO:0009751 - response to salicylic acid stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009749 - response to glucose stimulus	TO:0000238 - growth media composition sensitivity, TO:0000166 - gibberellic acid sensitivity	
25691	PLT8	OsPLT8	POLYOL/MONOSACCHARIDE TRANSPORTER 8	monosaccharide transporter PLT8, PLT protein 8	POLYOL/MONOSACCHARIDE TRANSPORTER 8		4		 Biochemical character	Os04g0679000	LOC_Os04g58220.1				GO:0015293 - symporter activity, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0008643 - carbohydrate transport, GO:0016020 - membrane		
25692	PLT9	OsPLT9	POLYOL/MONOSACCHARIDE TRANSPORTER 9	monosaccharide transporter PLT9, PLT protein 9	POLYOL/MONOSACCHARIDE TRANSPORTER 9		4		 Biochemical character	Os04g0679050	LOC_Os04g58230.1				GO:0015293 - symporter activity, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane		
25693	PLT10	OsPLT10	POLYOL/MONOSACCHARIDE TRANSPORTER 10	monosaccharide transporter PLT10, PLT protein 10	POLYOL/MONOSACCHARIDE TRANSPORTER 10		11		 Biochemical character	Os11g0637000	LOC_Os11g41830.1				GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0015144 - carbohydrate transmembrane transporter activity		
25694	PLT11	OsPLT11	POLYOL/MONOSACCHARIDE TRANSPORTER 11	monosaccharide transporter PLT11, PLT protein 11	POLYOL/MONOSACCHARIDE TRANSPORTER 11		11		 Biochemical character	Os11g0637100	LOC_Os11g41840.1				GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity		
25695	PLT12	OsPLT12	POLYOL/MONOSACCHARIDE TRANSPORTER 12	monosaccharide transporter PLT12, PLT protein 12	POLYOL/MONOSACCHARIDE TRANSPORTER 12		11		 Biochemical character	Os11g0637200	LOC_Os11g41850.1				GO:0016020 - membrane, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0015293 - symporter activity		
25696	PLT13	OsPLT13	POLYOL/MONOSACCHARIDE TRANSPORTER 13	monosaccharide transporter PLT13, PLT protein 13	POLYOL/MONOSACCHARIDE TRANSPORTER 13		11		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os11g0637400	LOC_Os11g41870.1				GO:0006970 - response to osmotic stress, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0005783 - endoplasmic reticulum, GO:0015031 - protein transport, GO:0009651 - response to salt stress	TO:0000095 - osmotic response sensitivity, TO:0006001 - salt tolerance	
25697	PLT14	OsPLT14	POLYOL/MONOSACCHARIDE TRANSPORTER 14	monosaccharide transporter PLT14, PLT protein 14	POLYOL/MONOSACCHARIDE TRANSPORTER 14		12		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0512100	LOC_Os12g32760.1				GO:0015293 - symporter activity, GO:0009651 - response to salt stress, GO:0015144 - carbohydrate transmembrane transporter activity, GO:0016020 - membrane	TO:0006001 - salt tolerance	PO:0009006 - shoot system 
25698	PLT15	OsPLT15	POLYOL/MONOSACCHARIDE TRANSPORTER 15	monosaccharide transporter PLT15, PLT protein 15	POLYOL/MONOSACCHARIDE TRANSPORTER 15		12		 Biochemical character	Os12g0514000	LOC_Os12g32940.1				GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0015144 - carbohydrate transmembrane transporter activity		
25699	XTPH1	OsXTPH1	XTPH PROTEIN 1	monosaccharide transporter XTPH1, XTPH protein 1	XTPH PROTEIN 1		3	a vacuolar glucose transporter (VGT). GO:1904659: glucose transmembrane transport.	 Biochemical character	Os03g0823100	LOC_Os03g60820.1				GO:0015293 - symporter activity, GO:0005355 - glucose transmembrane transporter activity, GO:0055085 - transmembrane transport, GO:0016020 - membrane		PO:0025034 - leaf , PO:0009006 - shoot system , PO:0020103 - flag leaf 
25700	XTPH2	OsXTPH2	XTPH PROTEIN 2	monosaccharide transporter XTPH2, XTPH protein 2	XTPH PROTEIN 2		10	a vacuolar glucose transporter (VGT). GO:1904659: glucose transmembrane transport.	 Biochemical character	Os10g0579200	LOC_Os10g42830.1				GO:0055085 - transmembrane transport, GO:0016020 - membrane, GO:0015293 - symporter activity, GO:0005353 - fructose transmembrane transporter activity, GO:0015755 - fructose transport, GO:0008643 - carbohydrate transport, GO:0005355 - glucose transmembrane transporter activity		PO:0009006 - shoot system , PO:0020103 - flag leaf , PO:0025034 - leaf 
25701	ALS2	OsALS2	ACETOLACTATE SYNTHASE 2	Acetolactate synthase 2	ACETOLACTATE SYNTHASE 2		4	Q7XKQ8.	 Biochemical character	Os04g0389800	LOC_Os04g32010.1				GO:0030976 - thiamin pyrophosphate binding, GO:0009099 - valine biosynthetic process, GO:0009635 - response to herbicide, GO:0009097 - isoleucine biosynthetic process, GO:0000287 - magnesium ion binding, GO:0050660 - FAD binding, GO:0003984 - acetolactate synthase activity, GO:0009507 - chloroplast, GO:0005948 - acetolactate synthase complex		
25702	ALS3	OsALS3	ACETOLACTATE SYNTHASE 3	Acetolactate synthase 3	ACETOLACTATE SYNTHASE 3		4		 Biochemical character	Os04g0389100	LOC_Os04g31960.1				GO:0005948 - acetolactate synthase complex, GO:0009099 - valine biosynthetic process, GO:0009097 - isoleucine biosynthetic process, GO:0030976 - thiamin pyrophosphate binding, GO:0050660 - FAD binding, GO:0003984 - acetolactate synthase activity		
25703	FES1A	OsFes1A, Fes1A	FES1-LIKE A	Fes1-like protein A	FES1-LIKE A		9		 Tolerance and resistance - Stress tolerance	Os03g0822700	LOC_Os03g60780.2, LOC_Os03g60780.1				GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0000774 - adenyl-nucleotide exchange factor activity, GO:0009408 - response to heat, GO:0005634 - nucleus	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
25704	FES1B	OsFes1B, Fes1B	FES1-LIKE B	Fes1-like protein B	FES1-LIKE B		9		 Tolerance and resistance - Stress tolerance	Os03g0271400	LOC_Os03g16460.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0009408 - response to heat, GO:0000774 - adenyl-nucleotide exchange factor activity	TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
25705	HDR3.1	OsHDR3.1	HOMOLOG OF DA1 ON RICE CHROMOSOME 3-1	homolog of DA1 on rice chromosome 3-1	HOMOLOG OF DA1 ON RICE CHROMOSOME 3-1		3	"a homolog of Arabidopsis DA1 (ubiquitin receptor, DA means \"large\" in Chinese)."		Os03g0626600	LOC_Os03g42820.4, LOC_Os03g42820.3, LOC_Os03g42820.2, LOC_Os03g42820.1				GO:0043130 - ubiquitin binding, GO:0046872 - metal ion binding		
25706	HDR12	OsHDR12	HOMOLOG OF DA1 ON RICE CHROMOSOME 12	homolog of DA1 on rice chromosome 12	HOMOLOG OF DA1 ON RICE CHROMOSOME 12		3	"a homolog of Arabidopsis DA1 (ubiquitin receptor, DA means \"large\" in Chinese)."		Os12g0596800	LOC_Os12g40490.1				GO:0043130 - ubiquitin binding, GO:0046872 - metal ion binding		
25707	UBR7	OsUBR7	UBIQUITIN PROTEIN LIGASE E3 COMPONENT N-RECOGNIN 7	ubiquitin protein ligase E3 component N-recognin 7	UBIQUITIN PROTEIN LIGASE E3 COMPONENT N-RECOGNIN 7	osubr7	6	a homolog of human UBR7. GO:0061630: ubiquitin protein ligase activity. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity,  Vegetative organ - Culm	Os06g0529800	LOC_Os06g33810.1				GO:0010390 - histone monoubiquitination, GO:0008270 - zinc ion binding, GO:0042127 - regulation of cell proliferation, GO:0005634 - nucleus, GO:0045787 - positive regulation of cell cycle	TO:0000734 - grain length, TO:0000145 - internode length, TO:0000346 - tiller number, TO:0000135 - leaf length, TO:0000590 - grain weight, TO:0000207 - plant height	PO:0020142 - stem internode , PO:0025034 - leaf , PO:0009005 - root , PO:0009049 - inflorescence , PO:0009066 - anther 
25708	H2B.1	OsH2B.1	HISTONE H2B.1	histone H2B.1	HISTONE H2B.1		3	A3AGM4.		Os03g0279000	LOC_Os03g17084.1				GO:0046982 - protein heterodimerization activity, GO:0030527 - structural constituent of chromatin, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0000786 - nucleosome		
25709	WAL3	OsWAL3	WHOLE ALBINO LEAF ON CHROMOSOME 3	Whole Albino Leaf on Chromosome 3, Whole Albino Leaf 3		wal3	3	GO:1900865: chloroplast RNA modification.	 Vegetative organ - Leaf	Os03g0644200	LOC_Os03g44210.2, LOC_Os03g44210.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0008380 - RNA splicing, GO:0009451 - RNA modification, GO:0003723 - RNA binding, GO:0003729 - mRNA binding, GO:0015979 - photosynthesis, GO:0015995 - chlorophyll biosynthetic process, GO:0000373 - Group II intron splicing	TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content, TO:0000326 - leaf color, TO:0000316 - photosynthetic ability	
25710	STLP1	OsSTLP1	SIALYLTRANSFERASE-LIKE PROTEIN 1	sialyltransferase-like protein 1	SIALYLTRANSFERASE-LIKE PROTEIN 1		1	Q94DD4.	 Biochemical character	Os01g0858900	LOC_Os01g63970.1				GO:0000139 - Golgi membrane, GO:0008373 - sialyltransferase activity, GO:0006486 - protein amino acid glycosylation		
25711	STLP2	OsSTLP2	SIALYLTRANSFERASE-LIKE PROTEIN 2	sialyltransferase-like protein 2	SIALYLTRANSFERASE-LIKE PROTEIN 2		12	Q2QXM3.	 Biochemical character	Os12g0151500	LOC_Os12g05550.1				GO:0006486 - protein amino acid glycosylation, GO:0008373 - sialyltransferase activity, GO:0000139 - Golgi membrane		
25712	STLP3	OsSTLP3	SIALYLTRANSFERASE-LIKE PROTEIN 3	sialyltransferase-like protein 3	SIALYLTRANSFERASE-LIKE PROTEIN 3		4	Q7FA29.	 Biochemical character	Os04g0506800	LOC_Os04g42760.1				GO:0000139 - Golgi membrane, GO:0006486 - protein amino acid glycosylation, GO:0008373 - sialyltransferase activity		
25713	XO2	Xo2, OsXo2	_				2	Osa002T0115800. GO:0098542: defense response to other organism. a Xoc (Xanthomonas oryzae pv. oryzicola) resistance gene.	 Tolerance and resistance - Disease resistance	Os02g0272900	LOC_Os02g17304.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0051707 - response to other organism, GO:0043531 - ADP binding	TO:0000203 - bacterial leaf streak disease resistance	
25714	OPL1	OsOPL1	OCTOPUS-LIKE 1		OCTOPUS-LIKE 1		1	a homolog of the Arabidopsis (Arabidopsis thaliana) OCTOPUS gene.	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os01g0852400	LOC_Os01g63310.1					TO:0000397 - grain size	
25715	RA68	OsRA68	_	En/Spm-like transposon protein, Protodermal factor 1			2	a cis target of MSTRG.10312.1.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0230300	LOC_Os02g13660.1				GO:0009555 - pollen development, GO:0000278 - mitotic cell cycle	TO:0000421 - pollen fertility, TO:0000696 - starch content, TO:0000180 - spikelet fertility, TO:0000455 - seed set percent, TO:0000218 - pollen abortion type	PO:0025545 - anther wall tapetum cell , PO:0009046 - flower , PO:0001007 - pollen development stage , PO:0009006 - shoot system , PO:0007600 - floral organ differentiation stage , PO:0001016 - L mature pollen stage , PO:0020047 - microsporocyte , PO:0025281 - pollen 
25716	UVRD	OsUvrD, UvrD	DNA REPAIR HELICASE UVRD	DNA repair helicase UvrD, UvrD helicase	DNA REPAIR HELICASE UVRD		7	a component of MMR (Mismatch repair) complex. GO:1990391: DNA repair complex. GO:0036292: DNA rewinding.	 Tolerance and resistance - Stress tolerance	Os07g0492100	LOC_Os07g30980.1				GO:0016787 - hydrolase activity, GO:0000725 - recombinational repair, GO:0003678 - DNA helicase activity, GO:0005524 - ATP binding, GO:0043138 - 3'-5' DNA helicase activity, GO:0005634 - nucleus, GO:0032508 - DNA duplex unwinding, GO:0006281 - DNA repair, GO:0003677 - DNA binding		
25717	AMD1	OsAMD1, PWA1, OsPWA1	ABERRANT MICROSPORE DEVELOPMENT 1	POLLEN WALL ABORTION 1		pwa1	1	a coiled-coil domain-containing protein.	 Reproductive organ - Pollination, fertilization, fertility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0755100	LOC_Os01g55094.2, LOC_Os01g55094.3, LOC_Os01g55094.1				GO:0048658 - tapetal layer development, GO:0080110 - sporopollenin biosynthetic process, GO:0009555 - pollen development, GO:0005634 - nucleus, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0010208 - pollen wall assembly, GO:0010584 - pollen exine formation	TO:0000421 - pollen fertility, TO:0000437 - male sterility	PO:0001032 - E anther wall tapetum degeneration initiated stage , PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0020048 - microspore , PO:0009071 - anther wall tapetum 
25718	PPR35	OsPPR035, PPR035, OsPPR35	PENTATRICOPEPTIDE REPEAT PROTEIN 35	Pentatricopeptide repeat protein 35	PENTATRICOPEPTIDE REPEAT PROTEIN 35	ppr035	1	GO:1900864: mitochondrial RNA modification.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0651100	LOC_Os01g46230.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0005739 - mitochondrion	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000605 - hydrogen peroxide content	
25719	PPR406	OsPPR406	PENTATRICOPEPTIDE REPEAT PROTEIN 406	Pentatricopeptide repeat protein 406	PENTATRICOPEPTIDE REPEAT PROTEIN 406	ppr406	10	GO:1900864: mitochondrial RNA modification.	 Tolerance and resistance - Stress tolerance	Os10g0444500	LOC_Os10g30760.1				GO:0009414 - response to water deprivation, GO:0005739 - mitochondrion, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0009451 - RNA modification, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000605 - hydrogen peroxide content, TO:0000276 - drought tolerance	
25720	DML4	OsDML4	DEMETHYLASE 4	demethylase 4	DEMETHYLASE 4	osdml4	6	GO:2000014: regulation of endosperm development.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance	Os06g0237900	LOC_Os06g13070.1				GO:0080111 - DNA demethylation, GO:0009960 - endosperm development, GO:0009408 - response to heat	TO:0002653 - endosperm storage protein content, TO:0000259 - heat tolerance, TO:0000266 - chalky endosperm, TO:0000107 - endosperm storage protein-1 content, TO:0000109 - endosperm storage protein-2 content, TO:0000653 - seed development trait	PO:0007633 - endosperm development stage 
25721	_	FLO19, OsFLO19	_	FLOURY ENDOSPERM19, FLOURY ENDOSPERM 19		flo19-1, flo19-2	3	a class I glutamine amidotransferase. GO:0071704: organic substance metabolic process.	 Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality	Os03g0685300	LOC_Os03g48060.1				GO:0006807 - nitrogen compound metabolic process, GO:0006541 - glutamine metabolic process	TO:0000448 - filled grain percentage, TO:0000104 - floury endosperm, TO:0000162 - seed quality, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000396 - grain yield	
25722	CUL4	OsCUL4	CULLIN 4	cullin 4, cullin4	CULLIN 4		3			Os03g0786800	LOC_Os03g57290.1				GO:0031625 - ubiquitin protein ligase binding, GO:0009740 - gibberellic acid mediated signaling, GO:0009739 - response to gibberellin stimulus, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0031461 - cullin-RING ubiquitin ligase complex		
25723	SALP1	OsSALP1	STRESS ASSOCIATED LITTLE PROTEIN 1	stress associated little protein 1	STRESS ASSOCIATED LITTLE PROTEIN 1		1	PO:0030123: panicle inflorescence. GO:0098771: inorganic ion homeostasis.	 Tolerance and resistance - Stress tolerance	Os01g0644200					GO:0048878 - chemical homeostasis, GO:0005886 - plasma membrane, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0006950 - response to stress, GO:0009628 - response to abiotic stimulus, GO:0009651 - response to salt stress	TO:0000168 - abiotic stress trait, TO:0006001 - salt tolerance, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009049 - inflorescence , PO:0025034 - leaf 
25724	SD38	OsSD38, OsKCS21, KCS21	SEMI-DWARF 38	semi-dwarf 38, 3-Ketoacyl-CoA synthase 21	3-KETOACYL-COA SYNTHASE 21	sd38	10	a fatty acid elongase, Beta-ketoacyl-CoA synthase. GO:1990170: stress response to cadmium ion.	 Vegetative organ - Culm,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0472900	LOC_Os10g33370.1				GO:0005789 - endoplasmic reticulum membrane, GO:0042761 - very-long-chain fatty acid biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane, GO:0046686 - response to cadmium ion, GO:0051510 - regulation of unidimensional cell growth, GO:0010364 - regulation of ethylene biosynthetic process	TO:0000207 - plant height	PO:0009010 - seed , PO:0009047 - stem 
25725	UGT2	OsUGT2	UDP-GLYCOSYLTRANSFERASE 2	UDP-glycosyltransferase 2	UDP-GLYCOSYLTRANSFERASE 2	ugt2ko	11	GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0444000	LOC_Os11g25720.1				GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0008194 - UDP-glycosyltransferase activity, GO:0006950 - response to stress	TO:0006001 - salt tolerance	
25726	TAP	OsTAP, FRS, OsFRS	THERMOSENSITIVE BARREN PANICLE	FAR1-RELATED SEQUENCE protein, FRS protein	FAR1-RELATED SEQUENCE PROTEIN	tap	2	a TE-derived transcription factor. TO:0000847: panicle inflorescence morphology trait. TO:0000862: floral organ morphology trait.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn	Os02g0284500	LOC_Os02g18370.1				GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009408 - response to heat, GO:0010229 - inflorescence development	TO:0000259 - heat tolerance, TO:0000621 - inflorescence development trait, TO:0000557 - secondary branch number, TO:0000657 - spikelet anatomy and morphology trait, TO:0006022 - floral organ development trait	PO:0001083 - inflorescence development stage 
25727	PRPL3L1	OsPRPL3L1	PLASTID RIBOSOMAL PROTEIN L3L1	Plastid ribosomal protein L3L1	PLASTID RIBOSOMAL PROTEIN L3L1		1	GO:1990904: ribonucleoprotein complex.	 Other	Os01g0251100	LOC_Os01g14830.1				GO:0003729 - mRNA binding, GO:0006412 - translation, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0005762 - mitochondrial large ribosomal subunit		
25728	MSR15	OsMSR15	MULTI-STRESS-RESPONSIVE GENE 15	multi-stress-responsive gene 15	MULTI-STRESS-RESPONSIVE PROTEIN 15		3	a rice C2H2-type zinc finger protein. GO:0000976: transcription cis-regulatory region binding.	 Other,  Tolerance and resistance - Stress tolerance	Os03g0610400	LOC_Os03g41390.1				GO:0009414 - response to water deprivation, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006002 - proline content, TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
25729	FLO22	OsFLO22	FLOURY ENDOSPERM 22	FLOURY ENDOSPERM22		flo22	7	a mitochondrion-localized P-type PPR (pentatricopeptide repeat) protein. GO:1900864: mitochondrial RNA modification. GO:0090615: mitochondrial mRNA processing. GO:2000904: regulation of starch metabolic process.	 Character as QTL - Plant growth activity,  Character as QTL - Grain quality,  Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances	Os07g0179000	LOC_Os07g08180.1, LOC_Os07g08180.2				GO:0005985 - sucrose metabolic process, GO:0003729 - mRNA binding, GO:0008380 - RNA splicing, GO:0006099 - tricarboxylic acid cycle, GO:0002082 - regulation of oxidative phosphorylation, GO:0009960 - endosperm development, GO:0005739 - mitochondrion, GO:0009660 - amyloplast organization, GO:0005982 - starch metabolic process	TO:0000357 - growth and development trait, TO:0002755 - cell organelle development trait, TO:0000104 - floury endosperm	PO:0007633 - endosperm development stage 
25730	DYW3	OsDYW3	DYW-TYPE PPR PROTEIN 3	DYW-type PPR protein 3, DYW-type pentatricopeptide repeat protein 3	DYW-TYPE PPR PROTEIN 3		1	GO:1900864: mitochondrial RNA modification.	 Character as QTL - Plant growth activity	Os01g0737900	LOC_Os01g53610.1				GO:0008270 - zinc ion binding, GO:0003723 - RNA binding, GO:0005739 - mitochondrion, GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle	TO:0000357 - growth and development trait	
25731	DYW1	OsDYW1	DYW-TYPE PPR PROTEIN 1	DYW-type PPR protein 1, DYW-type pentatricopeptide repeat protein 1	DYW-TYPE PPR PROTEIN 1		11			Os11g0131400	LOC_Os11g03690.1				GO:0003723 - RNA binding, GO:0008270 - zinc ion binding, GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle		
25732	DYW2	OsDYW2	DYW-TYPE PPR PROTEIN 2	DYW-type PPR protein 2, DYW-type pentatricopeptide repeat protein 2	DYW-TYPE PPR PROTEIN 2		3			Os03g0767700	LOC_Os03g55840.1				GO:0008270 - zinc ion binding		
25733	DYW4	OsDYW4	DYW-TYPE PPR PROTEIN 4	DYW-type PPR protein 4, DYW-type pentatricopeptide repeat protein 4	DYW-TYPE PPR PROTEIN 4		4			Os04g0174800	LOC_Os04g09530.2, LOC_Os04g09530.1				GO:0008270 - zinc ion binding, GO:0009507 - chloroplast, GO:0005739 - mitochondrion, GO:0009793 - embryonic development ending in seed dormancy, GO:0009451 - RNA modification, GO:0003729 - mRNA binding, GO:0003723 - RNA binding		
25734	DYW5	OsDYW5	DYW-TYPE PPR PROTEIN 5	DYW-type PPR protein 5, DYW-type pentatricopeptide repeat protein 5	DYW-TYPE PPR PROTEIN 5		7			Os07g0636900	LOC_Os07g44299.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding, GO:0008270 - zinc ion binding		
25735	DYW6	OsDYW6	DYW-TYPE PPR PROTEIN 6	DYW-type PPR protein 6, DYW-type pentatricopeptide repeat protein 6	DYW-TYPE PPR PROTEIN 6		6			Os06g0472300	LOC_Os06g27790.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0008270 - zinc ion binding		
25736	PLS1	OsPLS1	PLS-TYPE PPR PROTEIN 1	PLS-class Pentatricopeptide Repeat Protein 1, PLS-class PPR protein 1	PLS-TYPE PPR PROTEIN 1		1			Os01g0913400    	LOC_Os01g68524.2, LOC_Os01g68524.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25737	PLS2	OsPLS2	PLS-TYPE PPR PROTEIN 2	PLS-class Pentatricopeptide Repeat Protein 2, PLS-class PPR protein 2	PLS-TYPE PPR PROTEIN 2		4			Os04g0488200    	LOC_Os04g41120.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25738	PLS3	OsPLS3	PLS-TYPE PPR PROTEIN 3	PLS-class Pentatricopeptide Repeat Protein 3, PLS-class PPR protein 3	PLS-TYPE PPR PROTEIN 3		4			Os04g0414800    	LOC_Os04g33840.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25739	PLS4	OsPLS4	PLS-TYPE PPR PROTEIN 4	PLS-class Pentatricopeptide Repeat Protein 4, PLS-class PPR protein 4	PLS-TYPE PPR PROTEIN 4		6			Os06g0611200    	LOC_Os06g40860.1				GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle, GO:0003723 - RNA binding		
25740	PLS5	OsPLS5	PLS-TYPE PPR PROTEIN 5	PLS-class Pentatricopeptide Repeat Protein 5, PLS-class PPR protein 5	PLS-TYPE PPR PROTEIN 5		3			Os03g0369700    	LOC_Os03g25380.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25741	PLS6	OsPLS6	PLS-TYPE PPR PROTEIN 6	PLS-class Pentatricopeptide Repeat Protein 6, PLS-class PPR protein 6	PLS-TYPE PPR PROTEIN 6		7			Os07g0259400    	LOC_Os07g15570.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle		
25742	PLS7	OsPLS7	PLS-TYPE PPR PROTEIN 7	PLS-class Pentatricopeptide Repeat Protein 7, PLS-class PPR protein 7	PLS-TYPE PPR PROTEIN 7		8			Os08g0538800    	LOC_Os08g42610.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25743	PLS8	OsPLS8	PLS-TYPE PPR PROTEIN 8	PLS-class Pentatricopeptide Repeat Protein 8, PLS-class PPR protein 8	PLS-TYPE PPR PROTEIN 8		3			Os03g0216400    	LOC_Os03g11700.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25744	PLS9	OsPLS9	PLS-TYPE PPR PROTEIN 9	PLS-class Pentatricopeptide Repeat Protein 9, PLS-class PPR protein 9	PLS-TYPE PPR PROTEIN 9		1			Os01g0800400    	LOC_Os01g58630.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25745	PLS10	OsPLS10	PLS-TYPE PPR PROTEIN 10	PLS-class Pentatricopeptide Repeat Protein 10, PLS-class PPR protein 10	PLS-TYPE PPR PROTEIN 10		6			Os06g0231100    	LOC_Os06g12510.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25746	PLS11	OsPLS11	PLS-TYPE PPR PROTEIN 11	PLS-class Pentatricopeptide Repeat Protein 11, PLS-class PPR protein 11	PLS-TYPE PPR PROTEIN 11		6	a salt responsive SOAR1-like PPR gene.	 Tolerance and resistance - Stress tolerance	Os06g0216400    	LOC_Os06g11300.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0006970 - response to osmotic stress, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000095 - osmotic response sensitivity	
25747	PLS12	OsPLS12	PLS-TYPE PPR PROTEIN 12	PLS-class Pentatricopeptide Repeat Protein 12, PLS-class PPR protein 12	PLS-TYPE PPR PROTEIN 12		6			Os06g0125600    	LOC_Os06g03570.1, LOC_Os06g03570.2				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25748	PLS13	OsPLS13	PLS-TYPE PPR PROTEIN 13	PLS-class Pentatricopeptide Repeat Protein 13, PLS-class PPR protein 13	PLS-TYPE PPR PROTEIN 13		4			Os04g0110500    	LOC_Os04g01990.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25749	PLS14	OsPLS14	PLS-TYPE PPR PROTEIN 14	PLS-class Pentatricopeptide Repeat Protein 14, PLS-class PPR protein 14	PLS-TYPE PPR PROTEIN 14		3			Os03g0852000    	LOC_Os03g63510.1				GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle, GO:0003723 - RNA binding, GO:0016020 - membrane		
25750	PLS16	OsPLS16	PLS-TYPE PPR PROTEIN 16	PLS-class Pentatricopeptide Repeat Protein 16, PLS-class PPR protein 16	PLS-TYPE PPR PROTEIN 16		4			Os04g0676200    	LOC_Os04g57940.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25751	PLS17	OsPLS17	PLS-TYPE PPR PROTEIN 17	PLS-class Pentatricopeptide Repeat Protein 17, PLS-class PPR protein 17	PLS-TYPE PPR PROTEIN 17		8			Os08g0481000    	LOC_Os08g37520.1, LOC_Os08g37520.2				GO:0043231 - intracellular membrane-bounded organelle, GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25752	PLS18	OsPLS18	PLS-TYPE PPR PROTEIN 18	PLS-class Pentatricopeptide Repeat Protein 18, PLS-class PPR protein 18	PLS-TYPE PPR PROTEIN 18		5			Os05g0107000    	LOC_Os05g01635.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25753	PLS19	OsPLS19	PLS-TYPE PPR PROTEIN 19	PLS-class Pentatricopeptide Repeat Protein 19, PLS-class PPR protein 19	PLS-TYPE PPR PROTEIN 19		8			Os08g0500600    	LOC_Os08g39130.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25754	PLS20	OsPLS20	PLS-TYPE PPR PROTEIN 20	PLS-class Pentatricopeptide Repeat Protein 20, PLS-class PPR protein 20	PLS-TYPE PPR PROTEIN 20		1			Os01g0914600    	LOC_Os01g68610.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25755	PLS21	OsPLS21	PLS-TYPE PPR PROTEIN 21	PLS-class Pentatricopeptide Repeat Protein 21, PLS-class PPR protein 21	PLS-TYPE PPR PROTEIN 21		8			Os08g0375800    	LOC_Os08g28830.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25756	PLS23	OsPLS23	PLS-TYPE PPR PROTEIN 23	PLS-class Pentatricopeptide Repeat Protein 23, PLS-class PPR protein 23	PLS-TYPE PPR PROTEIN 23		3			Os03g0168550    	LOC_Os03g07234.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25757	PLS24	OsPLS24	PLS-TYPE PPR PROTEIN 24	PLS-class Pentatricopeptide Repeat Protein 24, PLS-class PPR protein 24	PLS-TYPE PPR PROTEIN 24		3			Os03g0849700    	LOC_Os03g63260.3, LOC_Os03g63260.2, LOC_Os03g63260.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle		
25758	PLS25	OsPLS25	PLS-TYPE PPR PROTEIN 25	PLS-class Pentatricopeptide Repeat Protein 25, PLS-class PPR protein 25	PLS-TYPE PPR PROTEIN 25		4			Os04g0432800    	LOC_Os04g35305.1				GO:0003723 - RNA binding, GO:0009451 - RNA modification		
25759	PLS26	OsPLS26	PLS-TYPE PPR PROTEIN 26	PLS-class Pentatricopeptide Repeat Protein 26, PLS-class PPR protein 26	PLS-TYPE PPR PROTEIN 26		1			Os01g0839400    	LOC_Os01g62220.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25760	PLS27	OsPLS27	PLS-TYPE PPR PROTEIN 27	PLS-class Pentatricopeptide Repeat Protein 27, PLS-class PPR protein 27	PLS-TYPE PPR PROTEIN 27		5			Os05g0581300    	LOC_Os05g50460.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25761	PLS28	OsPLS28	PLS-TYPE PPR PROTEIN 28	PLS-class Pentatricopeptide Repeat Protein 28, PLS-class PPR protein 28	PLS-TYPE PPR PROTEIN 28		7			Os07g0598500    	LOC_Os07g40750.1				GO:0003677 - DNA binding, GO:0005739 - mitochondrion		
25762	PLS29	OsPLS29	PLS-TYPE PPR PROTEIN 29	PLS-class Pentatricopeptide Repeat Protein 29, PLS-class PPR protein 29	PLS-TYPE PPR PROTEIN 29		2			Os02g0829800    	LOC_Os02g58300.1						
25763	PLS30	OsPLS30	PLS-TYPE PPR PROTEIN 30	PLS-class Pentatricopeptide Repeat Protein 30, PLS-class PPR protein 30	PLS-TYPE PPR PROTEIN 30		9			Os09g0555400    	LOC_Os09g38310.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25764	PLS32	OsPLS32	PLS-TYPE PPR PROTEIN 32	PLS-class Pentatricopeptide Repeat Protein 32, PLS-class PPR protein 32	PLS-TYPE PPR PROTEIN 32		3			Os03g0185200    	LOC_Os03g08680.1, LOC_Os03g08680.2				GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle, GO:0003723 - RNA binding		
25765	PLS33	OsPLS33	PLS-TYPE PPR PROTEIN 33	PLS-class Pentatricopeptide Repeat Protein 33, PLS-class PPR protein 33	PLS-TYPE PPR PROTEIN 33		1			Os01g0913800     							
25766	PLS35	OsPLS35	PLS-TYPE PPR PROTEIN 35	PLS-class Pentatricopeptide Repeat Protein 35, PLS-class PPR protein 35	PLS-TYPE PPR PROTEIN 35		7			Os07g0670000     	LOC_Os07g47370.1				GO:0043231 - intracellular membrane-bounded organelle, GO:0009451 - RNA modification, GO:0003723 - RNA binding		
25767	PLS36	OsPLS36	PLS-TYPE PPR PROTEIN 36	PLS-class Pentatricopeptide Repeat Protein 36, PLS-class PPR protein 36	PLS-TYPE PPR PROTEIN 36		2	GO:0080156: mitochondrial mRNA modification.		Os02g0290000     	LOC_Os02g18810.2, LOC_Os02g18810.1				GO:0005739 - mitochondrion, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation, GO:0009451 - RNA modification, GO:0003723 - RNA binding, GO:0043231 - intracellular membrane-bounded organelle		
25768	PLS37	OsPLS37	PLS-TYPE PPR PROTEIN 37	PLS-class Pentatricopeptide Repeat Protein 37, PLS-class PPR protein 37	PLS-TYPE PPR PROTEIN 37		3			Os03g0861900     	LOC_Os03g64370.1				GO:0009451 - RNA modification, GO:0003723 - RNA binding, GO:0005739 - mitochondrion		
25769	YBAK	OsGEF3, GEF3, OsYbaK, YbaK	YBAK DOMAIN RHO-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR	Guanine nucleotide exchange factor 3, Ybak domain RhoGEF	YBAK DOMAIN RHO-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR		2	RhoGEF family. Ybak domain containing protein. GO:0002161: aminoacyl-tRNA editing activity.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Culm	Os02g0662200	LOC_Os02g44330.1				GO:0004812 - aminoacyl-tRNA ligase activity	TO:0000207 - plant height, TO:0000734 - grain length, TO:0000397 - grain size	
25770	GDI5	OsGDI5	GDP DISSOCIATION INHIBITOR 5	guanine nucleotide-dissociation inhibitor 5	GDP DISSOCIATION INHIBITOR 5		1	RabGDI family. NADB domain containing protein.GO:2000541: positive regulation of protein geranylgeranylation.		Os01g0269100	LOC_Os01g16354.1				GO:0010152 - pollen maturation, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005829 - cytosol, GO:0005968 - Rab-protein geranylgeranyltransferase complex, GO:0005092 - GDP-dissociation inhibitor activity, GO:0004663 - Rab geranylgeranyltransferase activity, GO:0031267 - small GTPase binding, GO:0009846 - pollen germination, GO:0009860 - pollen tube growth, GO:0007264 - small GTPase mediated signal transduction		
25771	GDI6	OsGDI6	GDP DISSOCIATION INHIBITOR 6	guanine nucleotide-dissociation inhibitor 6	GDP DISSOCIATION INHIBITOR 6		12	CT833629. RabGDI family. NADB domain containing protein. 		Os12g0633700	LOC_Os12g43730.1				GO:0003774 - motor activity, GO:0005524 - ATP binding, GO:0016459 - myosin complex, GO:0005874 - microtubule		
25772	RHOGDI2	OsRhoGDI2, RhoGDI2, OsGDI7, GDI7	RHO-SPECIFIC GDP DISSOCIATION INHIBITOR 2	guanine nucleotide-dissociation inhibitor 7, GDP DISSOCIATION INHIBITOR 7	RHO-SPECIFIC GDP DISSOCIATION INHIBITOR 2		6	RhoGDI family. RhoGDI domain containing protein.		Os06g0318300	LOC_Os06g21340.3, LOC_Os06g21340.2, LOC_Os06g21340.1				GO:0005737 - cytoplasm, GO:0005829 - cytosol, GO:0016020 - membrane, GO:0005094 - Rho GDP-dissociation inhibitor activity, GO:0007266 - Rho protein signal transduction		
25773	RHOGDI3	OsRhoGDI3, RhoGDI3, OsGDI8, GDI8	RHO-SPECIFIC GDP DISSOCIATION INHIBITOR 3	guanine nucleotide-dissociation inhibitor 8, GDP DISSOCIATION INHIBITOR 8	RHO-SPECIFIC GDP DISSOCIATION INHIBITOR 3		2	RhoGDI family. RhoGDI domain containing protein.		Os02g0719000	LOC_Os02g48730.1				GO:0005737 - cytoplasm, GO:0007266 - Rho protein signal transduction, GO:0005094 - Rho GDP-dissociation inhibitor activity, GO:0016020 - membrane, GO:0005829 - cytosol		
25774	RHOGDI1	OsRhoGDI1, RhoGDI1, OsGDI9, GDI9	RHO-SPECIFIC GDP DISSOCIATION INHIBITOR 1	guanine nucleotide-dissociation inhibitor 9, GDP DISSOCIATION INHIBITOR 9	RHO-SPECIFIC GDP DISSOCIATION INHIBITOR 1		1	RhoGDI family. RhoGDI domain containing protein.		Os01g0913600	LOC_Os01g68540.1				GO:0005094 - Rho GDP-dissociation inhibitor activity, GO:0005829 - cytosol, GO:0016020 - membrane, GO:0007266 - Rho protein signal transduction, GO:0005737 - cytoplasm		
25775	NTF2	OsNTF2, OsGDI10, GDI10	NUCLEAR TRANSPORT FACTOR 2	nuclear transport factor p10/NTF2, guanine nucleotide-dissociation inhibitor 9, GDP DISSOCIATION INHIBITOR 9	NUCLEAR TRANSPORT FACTOR 2		8	Q9XJ54. RanGDI family. NTF2 domain containing protein. GO:0044613: nuclear pore central transport channel.		Os08g0532300	LOC_Os08g42000.1				GO:0015031 - protein transport, GO:0005737 - cytoplasm, GO:0006913 - nucleocytoplasmic transport		
25776	MOG1	OsMog1, Mog1, OsGEF6, GEF6	MOG1 DOMAIN GENE 1	MOG1 domain gene 1, Guanine nucleotide exchange factor 6	MOG1 DOMAIN PROTEIN 1		4	RanGEF family. MOG1 domain containing protein. PO:0030123: panicle inflorescence.		Os04g0459600	LOC_Os04g38610.3, LOC_Os04g38610.2				GO:0031267 - small GTPase binding, GO:0006606 - protein import into nucleus, GO:0015031 - protein transport, GO:0005634 - nucleus		PO:0009049 - inflorescence 
25777	RCC1-3	OsRCC1-3, OsGEF11, GEF11	RCC REPEAT PROTEIN 1-3	Guanine nucleotide exchange factor 11, RCC repeat protein 1-3, regulators of chromosomal condensation repeat protein 1-3	RCC REPEAT PROTEIN 1-3		8	RanGEF family. RCC1 domain containing protein.		Os08g0430700  	LOC_Os08g33390.1				GO:0005737 - cytoplasm		
25778	RCC1-4	OsRCC1-4, OsGEF8, GEF8	RCC REPEAT PROTEIN 1-4	Guanine nucleotide exchange factor 8, RCC repeat protein 1-4, regulators of chromosomal condensation repeat protein 1-4	RCC REPEAT PROTEIN 1-4		1	RanGEF family. RCC1 domain containing protein.		Os01g0777800  	LOC_Os01g56990.1						
25779	RCC1-5	OsRCC1-5, OsGE12, GEF12, OsFYVE05, OsFYVE5, FYVE05, FYVE5	RCC REPEAT PROTEIN 1-5	Guanine nucleotide exchange factor 12, RCC repeat protein 1-5, regulators of chromosomal condensation repeat protein 1-5, FYVE Domain-containing protein 05	RCC REPEAT PROTEIN 1-5		2	RanGEF family. RCC1 domain containing protein. PO:0030123: panicle inflorescence.		Os02g0684900  	LOC_Os02g45980.1				GO:0046872 - metal ion binding		PO:0009049 - inflorescence 
25780	RCC1-6	OsRCC1-6, OsGE13, GEF13, OsFYVE08, OsFYVE8, FYVE08, FYVE8	RCC REPEAT PROTEIN 1-6	Guanine nucleotide exchange factor 13, RCC repeat protein 1-6, regulators of chromosomal condensation repeat protein 1-6, FYVE Domain-containing protein 08	RCC REPEAT PROTEIN 1-6		4	RanGEF family. RCC1 domain containing protein. PO:0030123: panicle inflorescence.		Os04g0583700  	LOC_Os04g49430.1				GO:0046872 - metal ion binding		PO:0009049 - inflorescence 
25781	GEF23	OsRopGEF4, RopGEF4, OsGEF23	GUANINE NUCLEOTIDE EXCHANGE FACTOR 23	Rop-specific guanine nucleotide exchange factor 4, GEF for ROP 4, guanine nucleotide exchange factor for Rop 4, Rop-specific GEF4, Guanine nucleotide exchange factor 23	GUANINE NUCLEOTIDE EXCHANGE FACTOR 23		4	RhoGEF family. PRONE domain containing protein.			LOC_Os04g44170.1						
25782	SEC7-1	OsSEC7-1, OsGEF15, GEF15	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 1	Sec7 ARF guanine nucleotide exchange factor 1, Sec7 guanine nucleotide exchange factor 1, Sec7 domain guanine nucleotide exchange factor for Arf 1, Sec7 Arf-GEF 1, Guanine nucleotide exchange factor 15	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 1		3	ArfGEF family. SEC7 domain containing protein.		Os03g0246800	LOC_Os03g14260.2, LOC_Os03g14260.1				GO:0005085 - guanyl-nucleotide exchange factor activity, GO:0016020 - membrane, GO:0005829 - cytosol, GO:0032012 - regulation of ARF protein signal transduction, GO:0015031 - protein transport		
25783	SEC7-2	OsSEC7-2, OsGEF17, GEF17	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 2	Sec7 ARF guanine nucleotide exchange factor 2, Sec7 guanine nucleotide exchange factor 2, Sec7 domain guanine nucleotide exchange factor for Arf 2, Sec7 Arf-GEF 2, Guanine nucleotide exchange factor 17	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 2		7	ArfGEF family. SEC7 domain containing protein.		Os07g0564700/Os07g0564750	LOC_Os07g37750.1						
25784	SEC7-3	OsSEC7-3, OsGEF7, GEF7	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 3	Sec7 ARF guanine nucleotide exchange factor 3, Sec7 guanine nucleotide exchange factor 3, Sec7 domain guanine nucleotide exchange factor for Arf 3, Sec7 Arf-GEF 3, Guanine nucleotide exchange factor 7	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 3		6	ArfGEF family. SEC7 domain containing protein. PO:0030123: panicle inflorescence.		Os06g0622800	LOC_Os06g41780.1, LOC_Os06g41780.2						PO:0009049 - inflorescence 
25785	SEC7-4	OsSEC7-4, OsGEF1, GEF1	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 4	Sec7 ARF guanine nucleotide exchange factor 4, Sec7 guanine nucleotide exchange factor 4, Sec7 domain guanine nucleotide exchange factor for Arf 4, Sec7 Arf-GEF 4, Guanine nucleotide exchange factor 1	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 4		2	ArfGEF family. SEC7 domain containing protein. PO:0030123: panicle inflorescence.		Os02g0193800	LOC_Os02g10040.1						PO:0009049 - inflorescence , PO:0009029 - stamen 
25786	SEC7-5	OsSEC7-5, OsGEF16, GEF16	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 5	Sec7 ARF guanine nucleotide exchange factor 5, Sec7 guanine nucleotide exchange factor 5, Sec7 domain guanine nucleotide exchange factor for Arf 5, Sec7 Arf-GEF 5, Guanine nucleotide exchange factor 16	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 5		3	ArfGEF family. SEC7 domain containing protein. 		Os03g0704967/Os03g0705033	LOC_Os03g49790.1						
25787	SEC7-6	OsSEC7-6, OsGEF18, GEF18	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 6	Sec7 ARF guanine nucleotide exchange factor 6, Sec7 guanine nucleotide exchange factor 6, Sec7 domain guanine nucleotide exchange factor for Arf 6, Sec7 Arf-GEF 6, Guanine nucleotide exchange factor 18	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 6		5	ArfGEF family. SEC7 domain containing protein. 			LOC_Os05g27540.1						
25788	SEC7-7	OsSEC7-7, OsGEF14, GEF14	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 7	Sec7 ARF guanine nucleotide exchange factor 7, Sec7 guanine nucleotide exchange factor 7, Sec7 domain guanine nucleotide exchange factor for Arf 7, Sec7 Arf-GEF 7, Guanine nucleotide exchange factor 14	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 7		4	ArfGEF family. SEC7 domain containing protein. 		Os04g0117300	LOC_Os04g02690.1				GO:0016020 - membrane, GO:0005829 - cytosol, GO:0032012 - regulation of ARF protein signal transduction, GO:0005085 - guanyl-nucleotide exchange factor activity		
25789	SEC7-8	OsSEC7-8, OsGEF2, GEF2	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 8	Sec7 ARF guanine nucleotide exchange factor 8, Sec7 guanine nucleotide exchange factor 8, Sec7 domain guanine nucleotide exchange factor for Arf 8, Sec7 Arf-GEF 8, Guanine nucleotide exchange factor 2	SEC7 ARF GUANINE NUCLEOTIDE EXCHANGE FACTOR 8		1	ArfGEF family. SEC7 domain containing protein. PO:0030123: panicle inflorescence.		Os01g0772700	LOC_Os01g56590.1						PO:0009029 - stamen , PO:0009049 - inflorescence 
25790	VPS9A	OsVPS9A, OsGEF30, GEF30	VPS9 RAB GUANINE NUCLEOTIDE EXCHANGE FACTOR A	Guanine nucleotide exchange factor 30, VPS9 RabGEF protein A	VPS9 RAB GUANINE NUCLEOTIDE EXCHANGE FACTOR A		3	Q10NQ3. RanGEF family. VPS9 domain containing protein.		Os03g0262900	LOC_Os03g15650.3, LOC_Os03g15650.1, LOC_Os03g15650.2				GO:0005096 - GTPase activator activity, GO:0005802 - trans-Golgi network, GO:0000325 - plant-type vacuole, GO:0030139 - endocytic vesicle, GO:0005829 - cytosol, GO:0005737 - cytoplasm, GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport, GO:0031267 - small GTPase binding, GO:0005085 - guanyl-nucleotide exchange factor activity, GO:0005525 - GTP binding		
25791	XPO1	OsXPO1	EXPORTIN 1	exportin 1	EXPORTIN 1	osxpo1	3	TO:0000853: spikelet floret shape.	 Vegetative organ - Leaf,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Inflorescence,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os03g0858100	LOC_Os03g64080.1				GO:0010150 - leaf senescence, GO:0005634 - nucleus, GO:0005049 - nuclear export signal receptor activity, GO:0006611 - protein export from nucleus, GO:0005737 - cytoplasm, GO:0031267 - small GTPase binding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0010229 - inflorescence development, GO:0000055 - ribosomal large subunit export from nucleus, GO:0000056 - ribosomal small subunit export from nucleus	TO:0000276 - drought tolerance, TO:0000455 - seed set percent, TO:0000357 - growth and development trait, TO:0000168 - abiotic stress trait, TO:0000249 - leaf senescence, TO:0000621 - inflorescence development trait, TO:0000373 - inflorescence anatomy and morphology trait, TO:0000536 - floret color, TO:0000274 - floret anatomy and morphology trait, TO:0000207 - plant height, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage 
25792	MOS1	OsMOS1	MODIFIER OF SNC1	MODIFIER OF snc1	MODIFIER OF SNC1	osmos1, osmos1-1, osmos1-2, osmos1-3, osmos1-4	12	PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape,  Reproductive organ - Heading date,  Character as QTL - Yield and productivity	Os12g0566200	LOC_Os12g37860.1				GO:0001558 - regulation of cell growth, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000391 - seed size, TO:0002616 - flowering time, TO:0000590 - grain weight, TO:0000382 - 1000-seed weight	PO:0009005 - root , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0025034 - leaf 
25793	IRP1	OsIRP1	IMMUNE RESPONSE PEPTIDE 1	immune response peptide 1	IMMUNE RESPONSE PEPTIDE 1		4	a phytocytokine. a small signalling peptide. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.	 Tolerance and resistance - Disease resistance	Os04g0352066	LOC_Os04g28390.1				GO:0010200 - response to chitin, GO:0002221 - pattern recognition receptor signaling pathway, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus, GO:0006955 - immune response, GO:0043408 - regulation of MAPKKK cascade	TO:0000074 - blast disease	
25794	WED	OsWED	WEAKER DEFENSE	weaker defense		wed	11	a CNL-Type R Protein (CC-NLR, coiled-coil nucleotide-binding domain and Leu-rich repeat-containing protein). GO:0098542: defense response to other organism. TO:0000770: bacterial blight disease resistance. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.	 Tolerance and resistance - Disease resistance,  Reproductive organ - panicle,  Character as QTL - Yield and productivity,  Coloration - Chlorophyll,  Vegetative organ - Leaf,  Vegetative organ - Culm	Os11g0646300	LOC_Os11g42660.1				GO:0042742 - defense response to bacterium, GO:0006952 - defense response, GO:0043531 - ADP binding, GO:0002221 - pattern recognition receptor signaling pathway, GO:0009863 - salicylic acid mediated signaling pathway, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0080142 - regulation of salicylic acid biosynthetic process, GO:0002764 - immune response-regulating signal transduction, GO:0051707 - response to other organism	TO:0000326 - leaf color, TO:0000152 - panicle number, TO:0000495 - chlorophyll content, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000455 - seed set percent, TO:0000175 - bacterial blight disease resistance	
25795	SOAR1	OsSOAR1	SUPPRESSOR OF THE ABAR-OVEREXPRESSOR 1	suppressor of the ABAR-overexpressor 1	SUPPRESSOR OF THE ABAR-OVEREXPRESSOR 1		1	the homologous gene of Arabidopsis SOAR1. a Pentatricopeptide repeat (PPR) protein. GO:1901002: positive regulation of response to salt stress.	 Tolerance and resistance - Stress tolerance	Os01g0506100	LOC_Os01g32170.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0001016 - relative chlorophyll content	
25796	_		_				1	a salt responsive SOAR1-like PPR (Pentatricopeptide repeat) gene.	 Tolerance and resistance - Stress tolerance	Os01g0228400            	LOC_Os01g12810.3, LOC_Os01g12810.1, LOC_Os01g12810.2, LOC_Os01g12810.4, LOC_Os01g12810.5				GO:0009651 - response to salt stress, GO:0006970 - response to osmotic stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009006 - shoot system 
25797	_		_				6	a salt responsive SOAR1-like PPR (Pentatricopeptide repeat) gene.	 Tolerance and resistance - Stress tolerance	Os06g0184866            	LOC_Os06g08570.1				GO:0003729 - mRNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
25798	_		_				2	a salt responsive SOAR1-like PPR (Pentatricopeptide repeat) gene.	 Tolerance and resistance - Stress tolerance	Os02g0697500            	LOC_Os02g46980.1				GO:0006970 - response to osmotic stress, GO:0009451 - RNA modification, GO:0008270 - zinc ion binding, GO:0003729 - mRNA binding, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009737 - response to abscisic acid stimulus	TO:0006001 - salt tolerance, TO:0000095 - osmotic response sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009006 - shoot system , PO:0025034 - leaf , PO:0020104 - leaf sheath 
25799	YTH5	OsYTH05, YTH05, OsYTH5, OsECT6, ECT6	YT521-B HOMOLOGY 5	YT521-B homology 05, YTH family protein 5, YT521-B homology family protein 5, Evolutionarily conserved C terminal region 6, YTH domain protein ECT6	YTH FAMILY PROTEIN 5	yth05	3	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:0061157: mRNA destabilization. GO:1990247: N6-methyladenosine-containing RNA reader activity. 	 Vegetative organ - Culm,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0748000	LOC_Os03g53670.1, LOC_Os03g53670.2				GO:0010422 - regulation of brassinosteroid biosynthetic process, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0016102 - diterpenoid biosynthetic process, GO:0003723 - RNA binding, GO:0016126 - sterol biosynthetic process, GO:0003729 - mRNA binding, GO:0009611 - response to wounding	TO:0000439 - fungal disease resistance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000207 - plant height, TO:0000074 - blast disease, TO:0000315 - bacterial disease resistance	
25800	VWA1	OsvWA1, vWA1	VON WILLEBRAND FACTOR A1	von Willebrand factor A1	VON WILLEBRAND FACTOR A1		1			Os01g0640200	LOC_Os01g45320.1				GO:0005886 - plasma membrane		
25801	VWA4	OsvWA4, vWA4	VON WILLEBRAND FACTOR A4	von Willebrand factor A4	VON WILLEBRAND FACTOR A4		2	GO:1903842: response to arsenite ion.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0179600	LOC_Os02g08330.1				GO:0050832 - defense response to fungus, GO:0009645 - response to low light intensity stimulus, GO:0010044 - response to aluminum ion, GO:0046686 - response to cadmium ion	TO:0000460 - light intensity sensitivity, TO:0000074 - blast disease, TO:0000354 - aluminum sensitivity	
25802	VWA10	OsvWA10, vWA10	VON WILLEBRAND FACTOR A10	von Willebrand factor A10	VON WILLEBRAND FACTOR A10		3		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0403600	LOC_Os03g28990.2, LOC_Os03g28990.1				GO:0005886 - plasma membrane, GO:0009414 - response to water deprivation, GO:0009645 - response to low light intensity stimulus, GO:0009739 - response to gibberellin stimulus, GO:0050832 - defense response to fungus	TO:0000166 - gibberellic acid sensitivity, TO:0000401 - plant growth hormone sensitivity, TO:0000276 - drought tolerance, TO:0000074 - blast disease, TO:0000460 - light intensity sensitivity	PO:0007632 - seed maturation stage 
25803	VWA11	OsvWA11, vWA11	VON WILLEBRAND FACTOR A11	von Willebrand factor A11	VON WILLEBRAND FACTOR A11		3		 Tolerance and resistance - Stress tolerance	Os03g0407000	LOC_Os03g29350.4, LOC_Os03g29350.2, LOC_Os03g29350.1				GO:0009645 - response to low light intensity stimulus	TO:0000460 - light intensity sensitivity	
25804	VWA17	OsvWA17, vWA17	VON WILLEBRAND FACTOR A17	von Willebrand factor A17	VON WILLEBRAND FACTOR A17		6	GO:1903842: response to arsenite ion.	 Tolerance and resistance - Stress tolerance	Os06g0153400	LOC_Os06g06000.1				GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion		
25805	VWA18	OsvWA18, vWA18	VON WILLEBRAND FACTOR A18	von Willebrand factor A18	VON WILLEBRAND FACTOR A18		6		 Tolerance and resistance - Disease resistance	Os06g0578100	LOC_Os06g38040.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25806	VWA19	OsvWA19, vWA19	VON WILLEBRAND FACTOR A19	von Willebrand factor A19	VON WILLEBRAND FACTOR A19		6		 Tolerance and resistance - Disease resistance	Os06g0578700	LOC_Os06g38080.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25807	VWA21	OsvWA21, vWA21	VON WILLEBRAND FACTOR A21	von Willebrand factor A21	VON WILLEBRAND FACTOR A21		6		 Tolerance and resistance - Disease resistance	Os06g0652100	LOC_Os06g44240.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25808	VWA22	OsvWA22, vWA22	VON WILLEBRAND FACTOR A22	von Willebrand factor A22	VON WILLEBRAND FACTOR A22		7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0614300	LOC_Os07g42280.1				GO:0009414 - response to water deprivation, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance	
25809	VWA23	OsvWA23, vWA23	VON WILLEBRAND FACTOR A23	von Willebrand factor A23	VON WILLEBRAND FACTOR A23		8		 Tolerance and resistance - Disease resistance	Os08g0126000	LOC_Os08g03260.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25810	VWA28	OsvWA28, vWA28	VON WILLEBRAND FACTOR A28	von Willebrand factor A28	VON WILLEBRAND FACTOR A28		10			Os10g0141400	LOC_Os10g05180.1				GO:0031593 - polyubiquitin binding, GO:0008540 - proteasome regulatory particle, base subcomplex, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0005829 - cytosol, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus		
25811	VWA32	OsvWA32, vWA32	VON WILLEBRAND FACTOR A32	von Willebrand factor A32	VON WILLEBRAND FACTOR A32		11	CT835645.	 Tolerance and resistance - Disease resistance	Os11g0650500	LOC_Os11g43030.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
25812	VWA33	OsvWA33, vWA33	VON WILLEBRAND FACTOR A33	von Willebrand factor A33	VON WILLEBRAND FACTOR A33		11			Os11g0650600	LOC_Os11g43040.1						
25813	VWA34	OsvWA34, vWA34	VON WILLEBRAND FACTOR A34	von Willebrand factor A34	VON WILLEBRAND FACTOR A34		11			Os11g0679000	LOC_Os11g45380.1						
25814	VWA35	OsvWA35, vWA35	VON WILLEBRAND FACTOR A35	von Willebrand factor A35	VON WILLEBRAND FACTOR A35		11			Os11g0679400	LOC_Os11g45390.1						
25815	VWA36	OsvWA36, vWA36	VON WILLEBRAND FACTOR A36	von Willebrand factor A36	VON WILLEBRAND FACTOR A36		11	PO:0030123: panicle inflorescence. GO:1903842: response to arsenite ion.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance,  Tolerance and resistance - Stress tolerance	Os11g0687100	LOC_Os11g45990.1				GO:0009651 - response to salt stress, GO:0002242 - defense response to parasitic plant, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0009739 - response to gibberellin stimulus, GO:0009725 - response to hormone stimulus, GO:0046686 - response to cadmium ion, GO:0010288 - response to lead ion, GO:0042742 - defense response to bacterium	TO:0000074 - blast disease, TO:0000423 - gall midge resistance, TO:0000444 - parasitic weed, TO:0000175 - bacterial blight disease resistance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000401 - plant growth hormone sensitivity	PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0009006 - shoot system 
25816	VWA37	OsvWA37, vWA37	VON WILLEBRAND FACTOR A37	von Willebrand factor A37	VON WILLEBRAND FACTOR A37		11	PO:0030123: panicle inflorescence. GO:1903842: response to arsenite ion.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Insect resistance	Os11g0687200	LOC_Os11g46000.1, LOC_Os11g46000.2, LOC_Os11g46000.3				GO:0002213 - defense response to insect, GO:0009725 - response to hormone stimulus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0009645 - response to low light intensity stimulus, GO:0009739 - response to gibberellin stimulus, GO:0002242 - defense response to parasitic plant	TO:0000444 - parasitic weed, TO:0000401 - plant growth hormone sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000423 - gall midge resistance	PO:0009049 - inflorescence , PO:0009053 - peduncle , PO:0020104 - leaf sheath , PO:0009006 - shoot system 
25817	VWA40	OsvWA40, vWA40	VON WILLEBRAND FACTOR A40	von Willebrand factor A40	VON WILLEBRAND FACTOR A40		12	CT835566. GO:1903842: response to arsenite ion.	 Tolerance and resistance - Stress tolerance	Os12g0431700	LOC_Os12g24390.1				GO:0010288 - response to lead ion, GO:0046686 - response to cadmium ion		
25818	CUT1	OsCUT1, OsKCS1, KCS1	CUTICULAR 1	cuticular wax production 1, CUT gene family 1, 3-Ketoacyl-CoA synthase 1	3-KETOACYL-COA SYNTHASE 1		1	A beta-ketoacyl-CoA Synthase. PO:0030123: panicle inflorescence. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0529800	LOC_Os01g34560.1				GO:0010025 - wax biosynthetic process, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0005783 - endoplasmic reticulum, GO:0042542 - response to hydrogen peroxide, GO:0009922 - fatty acid elongase activity, GO:0009408 - response to heat, GO:0006633 - fatty acid biosynthetic process	TO:0006001 - salt tolerance, TO:0000382 - 1000-seed weight, TO:0000276 - drought tolerance	PO:0025034 - leaf , PO:0025388 - epicuticular wax , PO:0009047 - stem , PO:0009049 - inflorescence 
25819	CUT2	OsCUT2, OsKCS3, KCS3	CUTICULAR 2	cuticular wax production 2, CUT gene family 2, 3-Ketoacyl-CoA synthase 3	3-KETOACYL-COA SYNTHASE 3		2	A beta-ketoacyl-CoA Synthase. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0731900	LOC_Os02g49920.1				GO:0009651 - response to salt stress, GO:0046686 - response to cadmium ion, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0009922 - fatty acid elongase activity, GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009047 - stem 
25820	CUT3	OsCUT3, OsKCS6, KCS6	CUTICULAR 3	cuticular wax production 3, CUT gene family 3, 3-Ketoacyl-CoA synthase 6	3-KETOACYL-COA SYNTHASE 6		3	A beta-ketoacyl-CoA Synthase. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0162800	LOC_Os03g06705.1				GO:0046686 - response to cadmium ion, GO:0009922 - fatty acid elongase activity, GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009010 - seed , PO:0009047 - stem 
25821	CUT5	OsCUT5, OsKCS15, KCS15	CUTICULAR 5	cuticular wax production 5, CUT gene family 5, 3-Ketoacyl-CoA synthase 15	3-KETOACYL-COA SYNTHASE 15		6	A beta-ketoacyl-CoA Synthase. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0260500	LOC_Os06g14810.1				GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006633 - fatty acid biosynthetic process, GO:0009922 - fatty acid elongase activity, GO:0016020 - membrane	TO:0000276 - drought tolerance	PO:0025034 - leaf 
25822	CUT6	OsCUT6	CUTICULAR 6	cuticular wax production 6, CUT gene family 6			6	A beta-ketoacyl-CoA Synthase.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0262200	LOC_Os06g15020.1				GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups	TO:0006001 - salt tolerance	
25823	CUT7	OsCUT7, OsKCS16, KCS16	CUTICULAR 7	cuticular wax production 7, CUT gene family 7, 3-Ketoacyl-CoA synthase 16	3-KETOACYL-COA SYNTHASE 16		6	A beta-ketoacyl-CoA Synthase. GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os06g0262800	LOC_Os06g15170.1				GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009010 - seed , PO:0009049 - inflorescence 
25824	CUT8	OsCUT8	CUTICULAR 8	cuticular wax production 8, CUT gene family 8			6	A beta-ketoacyl-CoA Synthase.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os06g0263400	LOC_Os06g15250.1				GO:0009651 - response to salt stress, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
25825	PFT-ALPHA	OsPFT-alpha, OsPGGT I-alpha, OsPFT/OsPGGT I-alpha	PROTEIN FARNESYL-TRANSFERASE ALPHA	protein farnesyl-transferase alpha, protein geranylgeranyltransferase I alpha, protein farnesyltransferase/ protein geranylgeranyltransferase I-alpha, Protein Prenyltransferase Alpha Subunit	PROTEIN FARNESYL-TRANSFERASE ALPHA		9		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0514400	LOC_Os09g33930.4, LOC_Os09g33930.3, LOC_Os09g33930.2, LOC_Os09g33930.1, LOC_Os09g33930.5				GO:0005953 - CAAX-protein geranylgeranyltransferase complex, GO:0018342 - protein prenylation, GO:0005634 - nucleus, GO:0048509 - regulation of meristem development, GO:0018343 - protein farnesylation, GO:0018344 - protein geranylgeranylation, GO:0008360 - regulation of cell shape, GO:0046982 - protein heterodimerization activity, GO:0005965 - protein farnesyltransferase complex, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0009788 - negative regulation of abscisic acid mediated signaling, GO:0008318 - protein prenyltransferase activity	TO:0000214 - anther shape, TO:0000357 - growth and development trait, TO:0002658 - starch grain synthesis, TO:0000421 - pollen fertility	PO:0009066 - anther , PO:0025034 - leaf , PO:0009072 - plant ovary , PO:0009073 - stigma 
25826	PGGTI-BETA	OsPGGT I-beta, PGGT I-beta	PROTEIN GERANYLGERANYLTRANSFERASE I-BETA	protein geranylgeranyltransferase I-beta subuniit	PROTEIN GERANYLGERANYLTRANSFERASE I-BETA		1		 Biochemical character	Os01g0150100	LOC_Os01g05680.1				GO:0005634 - nucleus, GO:0008318 - protein prenyltransferase activity, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding		PO:0025034 - leaf 
25827	PK6	OsPK6	PYRUVATE KINASE 6	Pyruvate kinase 6	PYRUVATE KINASE 6	ospk6	1	PO:0030123: panicle inflorescence. 	 Seed - Physiological traits - Storage substances,  Character as QTL - Yield and productivity,  Biochemical character,  Character as QTL - Grain quality	Os01g0660300	LOC_Os01g47080.1				GO:0005737 - cytoplasm, GO:0006096 - glycolysis, GO:0016301 - kinase activity, GO:0005524 - ATP binding, GO:0005739 - mitochondrion, GO:0009570 - chloroplast stroma, GO:0009507 - chloroplast, GO:0004743 - pyruvate kinase activity, GO:0030955 - potassium ion binding, GO:0006633 - fatty acid biosynthetic process, GO:0016310 - phosphorylation, GO:0000287 - magnesium ion binding	TO:0000696 - starch content, TO:0000455 - seed set percent, TO:0000449 - grain yield per plant, TO:0000598 - protein content, TO:0000266 - chalky endosperm	PO:0009010 - seed , PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0009005 - root , PO:0009049 - inflorescence 
25828	PK7	OsPK7	PYRUVATE KINASE 7	Pyruvate kinase 7	PYRUVATE KINASE 7	ospk7	3		 Biochemical character,  Character as QTL - Yield and productivity	Os03g0325000	LOC_Os03g20880.1				GO:0004743 - pyruvate kinase activity, GO:0030955 - potassium ion binding, GO:0006096 - glycolysis, GO:0000287 - magnesium ion binding, GO:0005737 - cytoplasm, GO:0016310 - phosphorylation, GO:0016301 - kinase activity, GO:0005524 - ATP binding	TO:0000382 - 1000-seed weight	
25829	PK8	OsPK8	PYRUVATE KINASE 8	Pyruvate kinase 8	PYRUVATE KINASE 8	ospk8-1, ospk8-2	3	PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality,  Biochemical character,  Seed - Morphological traits - Grain shape	Os03g0672300	LOC_Os03g46910.1				GO:0004743 - pyruvate kinase activity, GO:0005524 - ATP binding, GO:0016301 - kinase activity, GO:0016310 - phosphorylation, GO:0005737 - cytoplasm, GO:0000287 - magnesium ion binding, GO:0006096 - glycolysis, GO:0030955 - potassium ion binding, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus	TO:0000449 - grain yield per plant, TO:0000598 - protein content, TO:0000615 - abscisic acid sensitivity, TO:0000696 - starch content, TO:0000196 - amylose content, TO:0000382 - 1000-seed weight, TO:0000399 - grain thickness	PO:0009049 - inflorescence , PO:0009005 - root 
25830	SH3P2	OsSH3P2	SH3 DOMAIN-CONTAINING PROTEIN 2	SH3 domain-containing protein 2	SH3 DOMAIN-CONTAINING PROTEIN 2	sh3p2, sh3p2-1, sh3p2-2, sh3p2-3	10		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0512700	LOC_Os10g36870.1				GO:0010941 - regulation of cell death, GO:0050832 - defense response to fungus, GO:0030136 - clathrin-coated vesicle, GO:0009646 - response to absence of light	TO:0000074 - blast disease, TO:0000460 - light intensity sensitivity	
25831	RGN1A	RGN1a, OsRGN1a	REGULATOR OF GRAIN NUMBER 1A	regulator of grain number 1a	REGULATOR OF GRAIN NUMBER 1A	rgn1a	1	a candidate gene for qGNP1.3. PO:0030123: panicle inflorescence.	 Biochemical character,  Character as QTL - Yield and productivity,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - panicle	Os01g0690600	LOC_Os01g49580.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0016020 - membrane, GO:0010229 - inflorescence development, GO:0006468 - protein amino acid phosphorylation	TO:0000557 - secondary branch number, TO:0000447 - filled grain number, TO:0000621 - inflorescence development trait, TO:0000547 - primary branch number, TO:0000040 - panicle length	PO:0009049 - inflorescence , PO:0001083 - inflorescence development stage 
25832	RGN1B	RGN1b, OsRGN1b	REGULATOR OF GRAIN NUMBER 1B	regulator of grain number 1b	REGULATOR OF GRAIN NUMBER 1B		1	a candidate gene for qGNP1.3. PO:0030123: panicle inflorescence.	 Biochemical character,  Character as QTL - Yield and productivity	Os01g0690800	LOC_Os01g49614.2, LOC_Os01g49614.1, LOC_Os01g49614.3				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0030247 - polysaccharide binding, GO:0016020 - membrane, GO:0006468 - protein amino acid phosphorylation	TO:0000447 - filled grain number	PO:0009049 - inflorescence 
25833	APA1331	SUBSrP1, OsSUBSrP1, OsAPA1331	APICAL PANICLE ABORTION 1331	apical panicle abortion1331	SUBTILISIN-LIKE SERINE PROTEASE 1	apa1331	4	PO:0030123: panicle inflorescence. GO:0097468: programmed cell death in response to reactive oxygen species. GO:1904276: regulation of wax biosynthetic process. GO:1901957: regulation of cutin biosynthetic process. GO:1902510: regulation of apoptotic DNA fragmentation. TO:0000905: seed yield trait.	 Reproductive organ - panicle,  Character as QTL - Yield and productivity	Os04g0483400	LOC_Os04g40720.1				GO:0043067 - regulation of programmed cell death, GO:0042335 - cuticle development, GO:0010143 - cutin biosynthetic process, GO:0010025 - wax biosynthetic process, GO:0006309 - DNA fragmentation involved in apoptosis, GO:0009556 - microsporogenesis, GO:0010229 - inflorescence development, GO:0048653 - anther development	TO:0000180 - spikelet fertility, TO:0000621 - inflorescence development trait, TO:0000455 - seed set percent, TO:0000605 - hydrogen peroxide content, TO:0000396 - grain yield, TO:0000245 - pollen free, TO:0002759 - grain number	PO:0009049 - inflorescence , PO:0001004 - anther development stage , PO:0001083 - inflorescence development stage , PO:0025386 - cuticular wax , PO:0025385 - cutin 
25834	STIL1	OsCZMT1, OsCZMT1, OsSTIL1	SALT-INSENSITIVE TILLING LINE 1	salt-insensitive TILLING line 1, CorA-like ZnB magnesium transporter 1	CORA-LIKE ZNB MAGNESIUM TRANSPORTER 1	sitl1	1	TO:0006044: magnesium content.	 Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll,  Vegetative organ - Root	Os01g0664100	LOC_Os01g47460.2, LOC_Os01g47460.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0046873 - metal ion transmembrane transporter activity, GO:0015693 - magnesium ion transport, GO:0006814 - sodium ion transport, GO:0005886 - plasma membrane, GO:0048364 - root development	TO:0000608 - sodium content, TO:0006001 - salt tolerance, TO:0000656 - root development trait, TO:0000495 - chlorophyll content	PO:0025034 - leaf , PO:0009005 - root , PO:0007520 - root development stage 
25835	RL3	OsRL3	RADIALIS-LIKE 3	RADIALIS-LIKE3	RADIALIS-LIKE 3	osrl3	2	a MYB-related transcription factor. GO:1900055: regulation of leaf senescence.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os02g0706400	LOC_Os02g47744.3, LOC_Os02g47744.1, LOC_Os02g47744.2, LOC_Os02g47744.4				GO:0009651 - response to salt stress, GO:0010150 - leaf senescence, GO:0009646 - response to absence of light, GO:0010271 - regulation of chlorophyll catabolic process, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus	TO:0000495 - chlorophyll content, TO:0000249 - leaf senescence, TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000460 - light intensity sensitivity, TO:0000326 - leaf color, TO:0000316 - photosynthetic ability, TO:0006002 - proline content	PO:0001054 - 4 leaf senescence stage 
25836	ASLRK	OsASLRK	ABA SENSITIVITY-RELATED LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE	ABA Sensitivity-related LRR-RLK, ABA Sensitivity-related leucine-rich repeat receptor-like kinase	ABA SENSITIVITY-RELATED LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE	Osaslrk	1		 Tolerance and resistance - Stress tolerance	Os01g0742400	LOC_Os01g53920.2, LOC_Os01g53920.1				GO:0009414 - response to water deprivation, GO:0005886 - plasma membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009628 - response to abiotic stimulus, GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006468 - protein amino acid phosphorylation	TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance, TO:0000168 - abiotic stress trait	
25837	TMN11	OsTMN11, TM9-11, OsTM9-11	TRANSMEMBRANE NINE FAMILY GENE 11	transmembrane nine family gene 11, transmembrane nine 11	TRANSMEMBRANE NINE FAMILY PROTEIN 11		2	GO:0072657: protein localization to membrane. TO:0020091: manganese content. TO:0006059: cadmium content trait. TO:0000905: seed yield trait. TO:0000975: grain width.	 Character as QTL - Plant growth activity,  Seed - Morphological traits - Grain shape,  Tolerance and resistance - Stress tolerance,  Reproductive organ - panicle,  Character as QTL - Yield and productivity	Os02g0797700	LOC_Os02g55440.1, LOC_Os02g55440.2				GO:0010042 - response to manganese ion, GO:0055071 - manganese ion homeostasis, GO:0046686 - response to cadmium ion, GO:0055065 - metal ion homeostasis, GO:0010043 - response to zinc ion, GO:0010039 - response to iron ion, GO:0016020 - membrane, GO:0000139 - Golgi membrane, GO:0010008 - endosome membrane, GO:0033106 - cis-Golgi network membrane, GO:0048316 - seed development, GO:0006828 - manganese ion transport, GO:0015691 - cadmium ion transport, GO:0055073 - cadmium ion homeostasis, GO:0010229 - inflorescence development	TO:0000621 - inflorescence development trait, TO:0000040 - panicle length, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0002730 - grain shape, TO:0000382 - 1000-seed weight, TO:0000357 - growth and development trait, TO:0000653 - seed development trait, TO:0000073 - manganese sensitivity, TO:0000351 - zinc sensitivity, TO:0000224 - iron sensitivity, TO:0001034 - relative plant height, TO:0000143 - relative biomass, TO:0000180 - spikelet fertility, TO:0000146 - seed length, TO:0000590 - grain weight	PO:0001170 - seed development stage , PO:0009006 - shoot system , PO:0009005 - root , PO:0001083 - inflorescence development stage , PO:0009010 - seed 
25838	FRK3	OsFRK3	FRUCTOKINASE 3	Fructokinase 3	FRUCTOKINASE 3	osfrk3, osfrk3-1, osfrk3-2	6	CT836318. TO:0000975: grain width. TO:0000919: grain weight.	 Seed - Physiological traits - Storage substances,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os06g0232200	LOC_Os06g12600.1				GO:0016310 - phosphorylation, GO:0016301 - kinase activity, GO:0016773 - phosphotransferase activity, alcohol group as acceptor, GO:0009507 - chloroplast, GO:0005829 - cytosol, GO:0008865 - fructokinase activity, GO:0016051 - carbohydrate biosynthetic process, GO:0006633 - fatty acid biosynthetic process, GO:0006000 - fructose metabolic process, GO:0010431 - seed maturation, GO:0006109 - regulation of carbohydrate metabolic process	TO:0000696 - starch content, TO:0006003 - oligosaccharide content, TO:0006005 - fructose content, TO:0000590 - grain weight, TO:0000328 - sucrose content, TO:0000399 - grain thickness, TO:0000382 - 1000-seed weight	PO:0007632 - seed maturation stage 
25839	PPR11	OsPPR11	PENTATRICOPEPTIDE REPEAT PROTEIN 11	pentatricopeptide repeat protein 11	PENTATRICOPEPTIDE REPEAT PROTEIN 11	osppr11, osppr11-1, osppr11-2	6		 Vegetative organ - Leaf	Os06g0199100	LOC_Os06g09880.1				GO:0031425 - chloroplast RNA processing, GO:0009793 - embryonic development ending in seed dormancy, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0010109 - regulation of photosynthesis, GO:0000373 - Group II intron splicing, GO:0009570 - chloroplast stroma, GO:0009534 - chloroplast thylakoid, GO:0003729 - mRNA binding	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	PO:0025034 - leaf 
25840	CSN1	OsCSN1	COP9 SIGNALOSOME COMPLEX SUBUNIT 1	COP9 signalosome complex subunit 1, COP9 signaling complex 1	COP9 SIGNALOSOME COMPLEX SUBUNIT 1	oscsn1-1, oscsn1-2	3	TO:0000949: seedling growth and development trait. GO:2000024: regulation of leaf development.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Vegetative organ - Root,  Vegetative organ - Culm	Os03g0116500	LOC_Os03g02540.1				GO:0032434 - regulation of proteasomal ubiquitin-dependent protein catabolic process, GO:0048366 - leaf development, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0009651 - response to salt stress, GO:0009646 - response to absence of light, GO:0065003 - macromolecular complex assembly, GO:0000338 - protein deneddylation, GO:0006972 - hyperosmotic response, GO:0009793 - embryonic development ending in seed dormancy, GO:0008180 - signalosome, GO:0009739 - response to gibberellin stimulus, GO:0009740 - gibberellic acid mediated signaling, GO:0009637 - response to blue light	TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0002675 - gibberellic acid content, TO:0000227 - root length, TO:0000019 - seedling height, TO:0000357 - growth and development trait, TO:0000135 - leaf length, TO:0001007 - coleoptile length, TO:0000159 - blue light sensitivity	
25841	FON7	OsFON7	FLORAL ORGAN NUMBER 7 	FLORAL ORGAN NUMBER7		fon7	8	TO:1000021: plant ovary morphology.	 Reproductive organ - Heading date,  Vegetative organ - Culm,  Reproductive organ - Spikelet, flower, glume, awn	Os08g0299000	LOC_Os08g20270.2, LOC_Os08g20270.1				GO:0048573 - photoperiodism, flowering	TO:0000137 - days to heading, TO:0002659 - pistil number, TO:0000225 - stamen number, TO:0006038 - floral organ number, TO:0000456 - spikelet number, TO:0000040 - panicle length, TO:0000145 - internode length, TO:0000019 - seedling height, TO:0000280 - seedling vigor, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0002616 - flowering time	PO:0009010 - seed , PO:0009051 - spikelet 
25842	SMP1	OsSMP1	STRESS RESPONSE MEMBRANE PROTEIN 1	stress response membrane protein 1, stress membrane protein 1	STRESS RESPONSE MEMBRANE PROTEIN 1		12		 Tolerance and resistance - Stress tolerance	Os12g0147200	LOC_Os12g05210.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0010038 - response to metal ion, GO:0046688 - response to copper ion, GO:0046686 - response to cadmium ion, GO:0009738 - abscisic acid mediated signaling, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000021 - copper sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
25843	_	GalT	_	beta 1, 3-galactosyltransferase			6		 Biochemical character	Os06g0229200	LOC_Os06g12390.2, LOC_Os06g12390.1				GO:0030246 - carbohydrate binding, GO:0000139 - Golgi membrane, GO:0042125 - protein amino acid galactosylation, GO:0006486 - protein amino acid glycosylation, GO:0008378 - galactosyltransferase activity		
25844	GASD	OsGASD, ARPC2B, OsARPC2B	GIBBERELLIC ACID SENSITIVE DWARF 	gibberellic acid sensitive dwarf, Actin-related protein 2/3 complex 2B subunit, ARP2/3 complex subunit 2B	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2B	osgasd	4	KF741775. TO:0000832: flag leaf morphology trait.	 Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os04g0512300	LOC_Os04g43290.1, LOC_Os04g43290.4, LOC_Os04g43290.2, LOC_Os04g43290.3				GO:0005200 - structural constituent of cytoskeleton, GO:0048316 - seed development, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0048366 - leaf development, GO:0009739 - response to gibberellin stimulus, GO:0010336 - gibberellic acid homeostasis, GO:0034314 - Arp2/3 complex-mediated actin nucleation, GO:0030041 - actin filament polymerization, GO:0051015 - actin filament binding, GO:0005737 - cytoplasm, GO:0005885 - Arp2/3 protein complex	TO:0000653 - seed development trait, TO:0000357 - growth and development trait, TO:0000396 - grain yield, TO:0000166 - gibberellic acid sensitivity, TO:0002757 - flag leaf length, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000590 - grain weight, TO:0000382 - 1000-seed weight, TO:0000391 - seed size, TO:0000152 - panicle number, TO:0000397 - grain size, TO:0000346 - tiller number, TO:0000145 - internode length, TO:0002675 - gibberellic acid content, TO:0000207 - plant height	PO:0001050 - leaf development stage , PO:0009006 - shoot system , PO:0001170 - seed development stage 
25845	SLA4	OsSLA4	SEEDLING-LETHAL ALBINO 4	seedling-lethal albino 4		sla4	7	a pentatricopeptide repeat protein. TO:0000949: seedling growth and development trait. GO:0090351: seedling development.	 Vegetative organ - Leaf,  Character as QTL - Plant growth activity,  Coloration - Chlorophyll	Os07g0172600	LOC_Os07g07620.1				GO:0000373 - Group II intron splicing, GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0009451 - RNA modification, GO:0009793 - embryonic development ending in seed dormancy, GO:0008270 - zinc ion binding, GO:0003723 - RNA binding	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000495 - chlorophyll content, TO:0000316 - photosynthetic ability	PO:0007131 - seedling development stage 
25846	YGL22	OsYGL22	YELLOW-GREEN LEAF 22	yellow green leaf 22		ygl22	1		 Vegetative organ - Leaf,  Coloration - Chlorophyll	Os01g0258000	LOC_Os01g15390.1				GO:0009658 - chloroplast organization, GO:0009507 - chloroplast	TO:0000495 - chlorophyll content, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color	
25847	ROSES1	OsROSES1	REDUCED ORGAN SIZE WITH EARLY SENESCENCE 1	reduced organ size with early senescence1		roses1	3	a BEL1-like homeobox transcription factor containing a plant-specific peroxidase (POX) domain. BGIOSGA013510. GO:0000981: DNA-binding transcription factor activity, RNA polymerase II-specific. PO:0030104: caryopsis fruit. TO:0020097: stomatal opening. TO: 0000854: spikelet floret size. TO:0020083: stem diameter.	 Coloration - Chlorophyll,  Character as QTL - Plant growth activity,  Vegetative organ - Leaf,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape,  Reproductive organ - panicle	Os03g0732100	LOC_Os03g52239.2, LOC_Os03g52239.3, LOC_Os03g52239.1				GO:0009408 - response to heat, GO:0009658 - chloroplast organization, GO:0010150 - leaf senescence, GO:0001558 - regulation of cell growth, GO:0042127 - regulation of cell proliferation, GO:0030104 - water homeostasis, GO:0005634 - nucleus, GO:0010118 - stomatal movement, GO:0000978 - RNA polymerase II regulatory transcription factor site sequence-specific DNA binding, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0003677 - DNA binding, GO:0006355 - regulation of transcription, DNA-dependent, GO:0015979 - photosynthesis, GO:0010374 - stomatal complex development	TO:0000237 - water stress trait, TO:0000259 - heat tolerance, TO:0000085 - leaf rolling, TO:0001018 - transpiration rate, TO:0000522 - stomatal conductance, TO:0001015 - photosynthetic rate, TO:0000382 - 1000-seed weight, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000495 - chlorophyll content, TO:0000293 - chlorophyll-a content, TO:0000326 - leaf color, TO:0000391 - seed size, TO:0000357 - growth and development trait, TO:0000043 - root anatomy and morphology trait, TO:0002637 - leaf size, TO:0006032 - panicle size, TO:0002600 - flower organ size, TO:0000145 - internode length, TO:0000346 - tiller number, TO:0000421 - pollen fertility, TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000566 - stomatal frequency, TO:0000064 - embryo related trait, TO:0000249 - leaf senescence, TO:0000530 - adaxial stomatal frequency, TO:0000529 - abaxial stomatal frequency, TO:0000227 - root length, TO:0002715 - chloroplast development trait, TO:0000069 - variegated leaf, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000576 - stem length	PO:0001054 - 4 leaf senescence stage , PO:0006073 - intercalary meristem , PO:0006346 - leaf intercalary meristem , PO:0025034 - leaf , PO:0006347 - stem intercalary meristem , PO:0020141 - stem node , PO:0006079 - shoot meristem , PO:0025181 - root elongation zone , PO:0006085 - root meristem , PO:0009051 - spikelet , PO:0009047 - stem , PO:0020122 - inflorescence axis , PO:0009009 - plant embryo 
25848	GLYRS3	OsGlyRS3, GlyRS3	GLYCYL-TRNA SYNTHETASE 3	glycyl-tRNA synthetase 3	GLYCYL-TRNA SYNTHETASE 3	osglyrs3	8		 Biochemical character,  Reproductive organ - Heading date	Os08g0538000	LOC_Os08g42560.1				GO:0005737 - cytoplasm, GO:0010228 - vegetative to reproductive phase transition, GO:0048573 - photoperiodism, flowering, GO:0006426 - glycyl-tRNA aminoacylation, GO:0016740 - transferase activity, GO:0004820 - glycine-tRNA ligase activity, GO:0005524 - ATP binding	TO:0002616 - flowering time, TO:0000137 - days to heading	PO:0009072 - plant ovary , PO:0009066 - anther , PO:0009010 - seed 
25849	GLYRS1	OsGlyRS1, GlyRS1	GLYCYL-TRNA SYNTHETASE 1	glycyl-tRNA synthetase 1	GLYCYL-TRNA SYNTHETASE 1		4		 Biochemical character	Os04g0398300	LOC_Os04g32650.1				GO:0006426 - glycyl-tRNA aminoacylation, GO:0005524 - ATP binding, GO:0004820 - glycine-tRNA ligase activity, GO:0005737 - cytoplasm		PO:0025034 - leaf , PO:0009049 - inflorescence 
25850	MO25A1	OsMO25A1	MOUSE PROTEIN-25A FAMILY PROTEIN 1	Mouse protein-25A family protein 1, MO25A  family protein 1, MO25 family protein A1	MOUSE PROTEIN-25A FAMILY PROTEIN 1	osmo25a1	7	GO:0035556: intracellular signal transduction. GO:1902182: shoot apical meristem development.	 Seed - Morphological traits - Embryo	Os07g0585100	LOC_Os07g39630.1				GO:0048507 - meristem development, GO:0000278 - mitotic cell cycle, GO:0009790 - embryonic development, GO:0042127 - regulation of cell proliferation, GO:0001558 - regulation of cell growth, GO:0043539 - protein serine/threonine kinase activator activity, GO:0042254 - ribosome biogenesis, GO:0006412 - translation, GO:0051726 - regulation of cell cycle	TO:0000620 - embryo development trait, TO:0000064 - embryo related trait	PO:0007631 - plant embryo stage 
25851	MO25A2	OsMO25A2	MOUSE PROTEIN-25A FAMILY PROTEIN 2	Mouse protein-25A family protein 2, MO25A  family protein 2, MO25 family protein A2	MOUSE PROTEIN-25A FAMILY PROTEIN 2		3	GO:0035556: intracellular signal transduction.		Os03g0172200	LOC_Os03g07600.1				GO:0043539 - protein serine/threonine kinase activator activity		PO:0009066 - anther 
25852	MO25B1	OsMO25B1	MOUSE PROTEIN-25B FAMILY PROTEIN 1	Mouse protein-25B family protein 1, MO25B  family protein 1, MO25 family protein B1	MOUSE PROTEIN-25B FAMILY PROTEIN 1		3	GO:0035556: intracellular signal transduction.		Os03g0359700	LOC_Os03g24520.2, LOC_Os03g24520.1				GO:0043539 - protein serine/threonine kinase activator activity		
25853	MO25B2	OsMO25B2	MOUSE PROTEIN-25B FAMILY PROTEIN 2	Mouse protein-25B family protein 2, MO25B  family protein 2, MO25 family protein B2	MOUSE PROTEIN-25B FAMILY PROTEIN 2		7	GO:0035556: intracellular signal transduction.		Os07g0647100	LOC_Os07g45280.1				GO:0043539 - protein serine/threonine kinase activator activity		
25854	UMP1	OsUMP1	UBIQUITIN-MEDIATED PROTEOLYSIS 1	ub-mediated proteolysis 1, Ubiquitin-mediated proteolysis 1, Proteasome maturation factor UMP1	PROTEASOME MATURATION FACTOR UMP1		3	TO:0000770: bacterial blight disease resistance. GO:0071588: hydrogen peroxide mediated signaling pathway.	 Tolerance and resistance - Disease resistance	Os03g0583700	LOC_Os03g38720.1				GO:0010310 - regulation of hydrogen peroxide metabolic process, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0043248 - proteasome assembly, GO:0050832 - defense response to fungus, GO:0005634 - nucleus	TO:0000175 - bacterial blight disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000129 - false smut disease resistance, TO:0000605 - hydrogen peroxide content, TO:0000074 - blast disease	
25855	SNF7.3	OsSNF7.3	ESCRT-III COMPONENT SNF7.3	ESCRT-III component SNF7.3, endosomal sorting complex required for transport III component SNF7.3, SNF7 family protein 3	ESCRT-III COMPONENT SNF7.3		11			Os11g0123500	LOC_Os11g03060.2, LOC_Os11g03060.1				GO:0009898 - internal side of plasma membrane, GO:0005768 - endosome, GO:0007034 - vacuolar transport, GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway, GO:0005771 - multivesicular body, GO:0000815 - ESCRT III complex, GO:0006900 - membrane budding		
25856	SNF7.4	OsSNF7.4	ESCRT-III COMPONENT SNF7.4	ESCRT-III component SNF7.4, endosomal sorting complex required for transport III component SNF7.4, SNF7 family protein 4	ESCRT-III COMPONENT SNF7.4		12	CU405869 (Oryza rufipogon cDNA).		Os12g0121400	LOC_Os12g02830.2, LOC_Os12g02830.3, LOC_Os12g02830.1				GO:0005768 - endosome, GO:0005771 - multivesicular body, GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway, GO:0007034 - vacuolar transport, GO:0006900 - membrane budding, GO:0009898 - internal side of plasma membrane, GO:0000815 - ESCRT III complex		
25857	VPS20	OsVPS20	ESCRT COMPONENT VPS20	ESCRT component VPS20, endosomal sorting complex required for transport component VPS20	ESCRT COMPONENT VPS20		2			Os02g0596500	LOC_Os02g38300.2, LOC_Os02g38300.1				GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway, GO:0007034 - vacuolar transport, GO:0005768 - endosome, GO:0005771 - multivesicular body, GO:0000815 - ESCRT III complex, GO:0006900 - membrane budding		
25858	VPS24	OsVPS24	ESCRT COMPONENT VPS24	ESCRT component VPS24, endosomal sorting complex required for transport component VPS24	ESCRT COMPONENT VPS24		7			Os07g0479400	LOC_Os07g29630.1				GO:0007034 - vacuolar transport, GO:0005768 - endosome		
25859	BRO1	OsBRO1	ESCRT COMPONENT BRO1	ESCRT component BRO1, endosomal sorting complex required for transport component BRO1	ESCRT COMPONENT BRO1		10			Os10g0495300	LOC_Os10g35250.1				GO:0043328 - protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway, GO:0005768 - endosome		
25860	DES1	OsDES1	DEFECTIVE EMBRYO SAC 1	defective embryo sac1		des1	3	a putative nuclear envelope membrane protein (NEMP)-domain-containing protein. TO:0000862: floral organ morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Female sterility,  Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - Pollination, fertilization, fertility	Os03g0430000	LOC_Os03g31570.1				GO:0009555 - pollen development, GO:0009860 - pollen tube growth, GO:0005637 - nuclear inner membrane, GO:0009553 - embryo sac development, GO:0005634 - nucleus, GO:0009736 - cytokinin mediated signaling, GO:0048608 - reproductive structure development, GO:0009566 - fertilization, GO:0005737 - cytoplasm, GO:0048443 - stamen development, GO:0009846 - pollen germination, GO:0048658 - tapetal layer development, GO:0000278 - mitotic cell cycle, GO:0048573 - photoperiodism, flowering, GO:0048437 - floral organ development, GO:0005886 - plasma membrane	TO:0000620 - embryo development trait, TO:0000180 - spikelet fertility, TO:0000218 - pollen abortion type, TO:0000358 - female sterility, TO:0002609 - stamen length, TO:0000455 - seed set percent, TO:0002660 - cytokinin content, TO:0006022 - floral organ development trait, TO:0000207 - plant height, TO:0000137 - days to heading, TO:0002616 - flowering time, TO:0000040 - panicle length, TO:0000201 - panicle color, TO:0000225 - stamen number, TO:0000421 - pollen fertility	PO:0025074 - embryo sac , PO:0007631 - plant embryo stage , PO:0009030 - carpel , PO:0009066 - anther , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0025585 - floral organ formation stage , PO:0025530 - reproductive shoot system development stage , PO:0020023 - outer integument , PO:0020022 - inner integument , PO:0020003 - plant ovule 
25861	BPH41	Bph41, OsBPH41	BROWN PLANTHOPPER RESISTANCE 41				4	four gene candidates for BPH41: LOC_Os04g02500, LOC_Os04g02530, LOC_Os04g02520, - (OsR498G0407466100.01, OsR498G0407469100.01, OsR498G0407476800.01, OsR498G0407489400.01).	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
25862	BPH42	Bph42, OsBPH42	BROWN PLANTHOPPER RESISTANCE 42				4	three gene candidates for BPH41: LOC_Os04g35220, LOC_Os04g35200, LOC_Os04g35210 (OsR498G0408591800.01, OsR498G0408592800.01, OsR498G0408592900.01).	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
25863	DNA2_1	OsDNA2_1	DNA REPLICATION HELICASE/NUCLEASE 2_1	DNA Replication Helicase/Nuclease2_1, DNA replication helicase 2_1	DNA REPLICATION HELICASE/NUCLEASE 2_1		4			Os04g0588200	LOC_Os04g49860.1				GO:0051539 - 4 iron, 4 sulfur cluster binding, GO:0033567 - DNA replication, Okazaki fragment processing, GO:0046872 - metal ion binding, GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity, GO:0006281 - DNA repair, GO:0005694 - chromosome, GO:0016020 - membrane, GO:0005634 - nucleus, GO:0017108 - 5'-flap endonuclease activity, GO:0005524 - ATP binding, GO:0003677 - DNA binding		
25864	DNA2_3	OsDNA2_3	DNA REPLICATION HELICASE/NUCLEASE 2_3	DNA Replication Helicase/Nuclease2_3, DNA replication helicase 2_3	DNA REPLICATION HELICASE/NUCLEASE 2_3		10			Os10g0118900	LOC_Os10g02930.2, LOC_Os10g02930.1						
25865	DNA2_4	OsDNA2_4	DNA REPLICATION HELICASE/NUCLEASE 2_4	DNA Replication Helicase/Nuclease2_4, DNA replication helicase 2_4	DNA REPLICATION HELICASE/NUCLEASE 2_4		7		 Tolerance and resistance - Stress tolerance	Os07g0495900	LOC_Os07g31340.3, LOC_Os07g31340.1, LOC_Os07g31340.2				GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0008270 - zinc ion binding, GO:0003724 - RNA helicase activity, GO:0003723 - RNA binding, GO:0016787 - hydrolase activity, GO:0003677 - DNA binding, GO:0004386 - helicase activity, GO:0009651 - response to salt stress, GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	TO:0006001 - salt tolerance	
25866	DNA2_5	OsDNA2_5	DNA REPLICATION HELICASE/NUCLEASE 2_5	DNA Replication Helicase/Nuclease2_5, DNA replication helicase 2_5	DNA REPLICATION HELICASE/NUCLEASE 2_5		9		 Tolerance and resistance - Stress tolerance	Os09g0130800	LOC_Os09g04440.1, LOC_Os09g04440.2				GO:0043139 - 5'-3' DNA helicase activity, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0004386 - helicase activity	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
25867	DNA2_6	OsDNA2_6	DNA REPLICATION HELICASE/NUCLEASE 2_6	DNA Replication Helicase/Nuclease2_6, DNA replication helicase 2_6	DNA REPLICATION HELICASE/NUCLEASE 2_6		2			Os02g0704300	LOC_Os02g47560.1				GO:0004386 - helicase activity		
25868	DNA2_8	OsDNA2_8	DNA REPLICATION HELICASE/NUCLEASE 2_8	DNA Replication Helicase/Nuclease2_8, DNA replication helicase 2_8	DNA REPLICATION HELICASE/NUCLEASE 2_8		3			Os03g0160400	LOC_Os03g06440.2, LOC_Os03g06440.1				GO:0003723 - RNA binding, GO:0009616 - virus induced gene silencing, GO:0035194 - posttranscriptional gene silencing by RNA, GO:0043186 - P granule, GO:0005829 - cytosol, GO:0032574 - 5'-3' RNA helicase activity, GO:0005737 - cytoplasm		
25869	DNA2_9	OsDNA2_9	DNA REPLICATION HELICASE/NUCLEASE 2_9	DNA Replication Helicase/Nuclease2_9, DNA replication helicase 2_9	DNA REPLICATION HELICASE/NUCLEASE 2_9		10			Os10g0537600	LOC_Os10g39230.1				GO:0004386 - helicase activity		
25870	DNA2_10	OsDNA2_10	DNA REPLICATION HELICASE/NUCLEASE 2_10	DNA Replication Helicase/Nuclease2_10, DNA replication helicase 2_10	DNA REPLICATION HELICASE/NUCLEASE 2_10		4			Os04g0582700	LOC_Os04g49320.1				GO:0004386 - helicase activity		
25871	DNA2_11	OsDNA2_11	DNA REPLICATION HELICASE/NUCLEASE 2_11	DNA Replication Helicase/Nuclease2_11, DNA replication helicase 2_11	DNA REPLICATION HELICASE/NUCLEASE 2_11		4		 Tolerance and resistance - Stress tolerance	Os04g0582900	LOC_Os04g49340.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
25872	DNA2_12	OsDNA2_12	DNA REPLICATION HELICASE/NUCLEASE 2_12	DNA Replication Helicase/Nuclease2_12, DNA replication helicase 2_12	DNA REPLICATION HELICASE/NUCLEASE 2_12		4			Os04g0582000	LOC_Os04g49270.1				GO:0004386 - helicase activity, GO:0003723 - RNA binding		
25873	DNA2_13	OsDNA2_13	DNA REPLICATION HELICASE/NUCLEASE 2_13	DNA Replication Helicase/Nuclease2_13, DNA replication helicase 2_13	DNA REPLICATION HELICASE/NUCLEASE 2_13		4			Os04g0582600	LOC_Os04g49310.1				GO:0003723 - RNA binding, GO:0004386 - helicase activity		
25874	DNA2_14	OsDNA2_14	DNA REPLICATION HELICASE/NUCLEASE 2_14	DNA Replication Helicase/Nuclease2_14, DNA replication helicase 2_14	DNA REPLICATION HELICASE/NUCLEASE 2_14		11		 Tolerance and resistance - Stress tolerance	Os11g0649000	LOC_Os11g42900.1				GO:0004386 - helicase activity, GO:0003723 - RNA binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
25875	DNA2_15	OsDNA2_15	DNA REPLICATION HELICASE/NUCLEASE 2_15	DNA Replication Helicase/Nuclease2_15, DNA replication helicase 2_15	DNA REPLICATION HELICASE/NUCLEASE 2_15		2		 Tolerance and resistance - Stress tolerance	Os02g0684150	LOC_Os02g45910.1, LOC_Os02g45900.1				GO:0009414 - response to water deprivation, GO:0004386 - helicase activity, GO:0003723 - RNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
25876	DNA2_16	OsDNA2_16	DNA REPLICATION HELICASE/NUCLEASE 2_16	DNA Replication Helicase/Nuclease2_16, DNA replication helicase 2_16	DNA REPLICATION HELICASE/NUCLEASE 2_16		6			Os06g0310200	LOC_Os06g20500.1				GO:0003723 - RNA binding, GO:0004386 - helicase activity		
25877	DNA2_17	OsDNA2_17	DNA REPLICATION HELICASE/NUCLEASE 2_17	DNA Replication Helicase/Nuclease2_17, DNA replication helicase 2_17	DNA REPLICATION HELICASE/NUCLEASE 2_17		4			Os04g0424200	LOC_Os04g34670.1				GO:0004386 - helicase activity, GO:0003723 - RNA binding		
25878	XA47	Xa47, OsXa47, Xa47(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 47			xa47	11	AB510262. Q2QZF2. a typical CC-NBS-LRR resistance protein.	 Tolerance and resistance - Disease resistance	Os11g0688832	LOC_Os11g46200.1				GO:0005634 - nucleus, GO:0006952 - defense response, GO:0051707 - response to other organism, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0043531 - ADP binding	TO:0000175 - bacterial blight disease resistance	
25879	NY1	OsNY1, OsMAIL1, MAIL1	_	MAINTENANCE OF MERISTEM LIKE 1		ny1, mail1, mail1-1, mail1-2, mail1-3, mail1-4, mail1-5	7	similar to MAINTENANCE OF MERISTEM LIKE 1 (MAIL1) of Arabidopsis. TO:1000022: anther morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Reproductive organ - panicle,  Vegetative organ - Culm,  Character as QTL - Yield and productivity	Os07g0507500	LOC_Os07g32406.1				GO:0048658 - tapetal layer development, GO:0010073 - meristem maintenance, GO:0009555 - pollen development, GO:0051321 - meiotic cell cycle	TO:0000382 - 1000-seed weight, TO:0000447 - filled grain number, TO:0000396 - grain yield, TO:0000421 - pollen fertility, TO:0000207 - plant height, TO:0000040 - panicle length, TO:0000152 - panicle number, TO:0000440 - grain number per plant, TO:0000455 - seed set percent	PO:0001004 - anther development stage , PO:0025588 - flower meristem transition stage , PO:0020148 - shoot apical meristem , PO:0009072 - plant ovary , PO:0009073 - stigma , PO:0001007 - pollen development stage 
25880	NY2	OsNY2	_			ny2	7	a eukaryotic translation initiation factor 3 subunit E. GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e. 	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Character as QTL - Yield and productivity,  Vegetative organ - Culm,  Reproductive organ - panicle	Os07g0503700	LOC_Os07g32040.1				GO:0048658 - tapetal layer development, GO:0001732 - formation of translation initiation complex, GO:0003743 - translation initiation factor activity, GO:0010073 - meristem maintenance, GO:0009555 - pollen development, GO:0051321 - meiotic cell cycle, GO:0048653 - anther development, GO:0009556 - microsporogenesis, GO:0005634 - nucleus, GO:0005852 - eukaryotic translation initiation factor 3 complex, GO:0033290 - eukaryotic 48S preinitiation complex, GO:0016282 - eukaryotic 43S preinitiation complex	TO:0000455 - seed set percent, TO:0000218 - pollen abortion type, TO:0000437 - male sterility, TO:0000396 - grain yield, TO:0000421 - pollen fertility, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000152 - panicle number, TO:0000440 - grain number per plant, TO:0000382 - 1000-seed weight, TO:0000447 - filled grain number	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
25881	MSH7	OsMSH7	MUTATED S HOMOLOGUE 7	Mutated S homologue 7	MUTATED S HOMOLOGUE 7	msh7, Osmsh7	1	GO:0140664: ATP-dependent DNA damage sensor activity.	 Tolerance and resistance - Stress tolerance	Os01g0180600	LOC_Os01g08540.1				GO:0032300 - mismatch repair complex, GO:0005524 - ATP binding, GO:0030983 - mismatched DNA binding, GO:0006298 - mismatch repair, GO:0051726 - regulation of cell cycle, GO:0005634 - nucleus, GO:0046686 - response to cadmium ion		
25882	GLR9.1	OsGLR9.1	GLUTAMATE RECEPTOR 9.1	Glutamate receptor 9.1, Glutamate Receptor-like Gene 9.1, Glutamate-like receptor 9.1	GLUTAMATE RECEPTOR 9.1		9	GO:0038023: signaling receptor activity.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0428300					GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0015276 - ligand-gated ion channel activity, GO:0005886 - plasma membrane, GO:0004930 - G-protein coupled receptor activity, GO:0016020 - membrane	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
25883	GLR9.2	OsGLR9.2	GLUTAMATE RECEPTOR 9.2	Glutamate receptor 9.2, Glutamate Receptor-like Gene 9.2, Glutamate-like receptor 9.2	GLUTAMATE RECEPTOR 9.2		9		 Tolerance and resistance - Stress tolerance,  Character as QTL - Yield and productivity,  Biochemical character	Os09g0428600					GO:0016020 - membrane, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0004930 - G-protein coupled receptor activity	TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0000040 - panicle length, TO:0000382 - 1000-seed weight	
25884	LOTR1	OsLOTR1	LORD OF THE RINGS 1		LORD OF THE RINGS 1		6			Os06g0474500	LOC_Os06g28000.1				GO:0009664 - plant-type cell wall organization	TO:0000731 - lignin content	
25885	BPH45	Bph45, OsBPH45	BROWN PLANTHOPPER RESISTANCE 45				4	The Bph45 gene locus is located close by RM16655 and RM3317 (~13.7 Mb) on chromosome 4.	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect, GO:0046250 - limonene biosynthetic process	TO:0000424 - brown planthopper resistance	
25886	OTP85	OsOTP85	ORGANELLE TRANSCRIPT PROCESSING 85	PPR-protein OTP85	PPR-PROTEIN OTP85		3			Os03g0795200	LOC_Os03g58100.1				GO:0008270 - zinc ion binding, GO:0009507 - chloroplast, GO:0003723 - RNA binding, GO:0031425 - chloroplast RNA processing, GO:0009451 - RNA modification		
25887	TIF1	OsTIF1	TN1 INTERACTION FACTOR 1	TN1 interaction factor 1	TN1 INTERACTION FACTOR 1	tif1-1, tif1-2	7		 Vegetative organ - Culm	Os07g0256200	LOC_Os07g15270.1				GO:0003723 - RNA binding, GO:0048831 - regulation of shoot development	TO:0000329 - tillering ability, TO:0000346 - tiller number	
25888	LIP5	OsLIP5	LYST-INTERACTING PROTEIN 5	LYST-INTERACTING PROTEIN5	LYST-INTERACTING PROTEIN 5	oslip5, oslip5-1, oslip5-2, oslip5-3	6	GO:0098542: defense response to other organism. GO:1900426: positive regulation of defense response to bacterium. GO:1903335: regulation of vacuolar transport. GO:0071985: multivesicular body sorting pathway. GO:0036258: multivesicular body assembly.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance	Os06g0308800	LOC_Os06g20390.1				GO:0042742 - defense response to bacterium, GO:0010939 - regulation of necrotic cell death, GO:0005829 - cytosol, GO:0010008 - endosome membrane, GO:0005771 - multivesicular body, GO:0005634 - nucleus, GO:0042803 - protein homodimerization activity, GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway, GO:0080001 - mucilage extrusion from seed coat, GO:0015031 - protein transport, GO:0009651 - response to salt stress, GO:0006952 - defense response, GO:0030100 - regulation of endocytosis	TO:0006001 - salt tolerance, TO:0000112 - disease resistance, TO:0000207 - plant height, TO:0000357 - growth and development trait	
25889	HAK_LIKE	HAK_like, OsHAK_like	HAK LIKE TRANSPORTER	HAK like transporter	HAK LIKE TRANSPORTER		3		 Tolerance and resistance - Stress tolerance,  Biochemical character		LOC_Os03g55370.1				GO:0015079 - potassium ion transmembrane transporter activity, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis	TO:0000644 - relative root dry weight, TO:0000516 - relative root length, TO:0002662 - leaf rolling tolerance, TO:0002664 - leaf yellowing tolerance, TO:0000636 - relative shoot dry weight, TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000525 - sodium to potassium content ratio, TO:0001016 - relative chlorophyll content	PO:0009005 - root 
25890	SRDP	OsSRDP	STRESS RESPONSIVE DUF740 PROTEIN	Stress Responsive DUF740 Protein	STRESS RESPONSIVE DUF740 PROTEIN		4		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os04g0690500	LOC_Os04g59420.2, LOC_Os04g59420.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0030104 - water homeostasis, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus	TO:0000605 - hydrogen peroxide content, TO:0006001 - salt tolerance, TO:0000074 - blast disease, TO:0001016 - relative chlorophyll content, TO:0000303 - cold tolerance, TO:0002662 - leaf rolling tolerance, TO:0000636 - relative shoot dry weight, TO:0006002 - proline content, TO:0000136 - relative water content, TO:0000276 - drought tolerance	
25891	_		_				5	a potential candidate interaction partner of OsSRDP.	 Tolerance and resistance - Stress tolerance	Os05g0188700	LOC_Os05g09640.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
25892	CM-LOX1	OsCM-LOX1	_				12		 Biochemical character	Os12g0559934	LOC_Os12g37350.1				GO:0046872 - metal ion binding, GO:0034440 - lipid oxidation, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen		
25893	DHP	OsDHP	DIHYDROPYRIMIDINASE	dihydropyrimidinase	DIHYDROPYRIMIDINASE		1		 Biochemical character	Os01g0807900	LOC_Os01g59340.2, LOC_Os01g59340.3, LOC_Os01g59340.1				GO:0005829 - cytosol, GO:0006208 - pyrimidine base catabolic process, GO:0004157 - dihydropyrimidinase activity, GO:0005737 - cytoplasm, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds		
25894	B-UP	Osb-UP, b-UP, Osbeta-UP, beta-UP	BETA-UREIDOPROPIONASE	beta-ureidopropionase	BETA-UREIDOPROPIONASE		7		 Biochemical character	Os07g0485100	LOC_Os07g30170.1				GO:0003837 - beta-ureidopropionase activity, GO:0006807 - nitrogen compound metabolic process, GO:0005829 - cytosol, GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, GO:0006212 - uracil catabolic process, GO:0043562 - cellular response to nitrogen levels, GO:0033396 - beta-alanine biosynthetic process via 3-ureidopropionate		
25895	DHODH1	OsDHODH	DIHYDROOROTATE DEHYDROGENASE	dihydroorotate dehydrogenase	DIHYDROOROTATE DEHYDROGENASE		4	DQ269457. Q7XKC8. GO:0106430: dihydroorotate dehydrogenase (quinone) activity. GO:0044205: 'de novo' UMP biosynthetic process.	 Biochemical character	Os04g0676300	LOC_Os04g57950.1				GO:0009220 - pyrimidine ribonucleotide biosynthetic process, GO:0005743 - mitochondrial inner membrane, GO:0006207 - 'de novo' pyrimidine base biosynthetic process, GO:0004152 - dihydroorotate dehydrogenase activity		
25896	ALR2	OsALR2	ALDOSE REDUCTASE 2		ALDOSE REDUCTASE 2		5	one of six members of Group 4 Aldo-Keto Reductase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os05g0474600	LOC_Os05g39690.1				GO:0009635 - response to herbicide, GO:0004032 - aldehyde reductase activity, GO:0005829 - cytosol, GO:0031969 - chloroplast membrane, GO:0016491 - oxidoreductase activity, GO:0018920 - glyphosate metabolic process	TO:0005006 - glyphosate sensitivity, TO:0000058 - herbicide sensitivity	
25897	NAL22	OsNAL22	NARROW LEAF 22	Narrow Leaf 22		nal22, nal22-2, nal22-3	3	Maf-like nucleoside triphosphate pyrophosphatase protein family. TO:0000821: leaf vein size.	 Vegetative organ - Root,  Vegetative organ - Leaf,  Biochemical character	Os03g0724700	LOC_Os03g51479.2, LOC_Os03g51479.3, LOC_Os03g51479.1				GO:0048364 - root development, GO:0048366 - leaf development, GO:0047429 - nucleoside-triphosphate diphosphatase activity, GO:0051302 - regulation of cell division, GO:0009739 - response to gibberellin stimulus	TO:0000227 - root length, TO:0000655 - leaf development trait, TO:0000656 - root development trait, TO:0000166 - gibberellic acid sensitivity, TO:0000370 - leaf width	PO:0009005 - root , PO:0025034 - leaf , PO:0007520 - root development stage , PO:0001050 - leaf development stage 
25898	BRD3A	OsBrd3a, Brd3a	BROMODOMAIN-CONTAINING PROTEIN 3A	bromodomain-containing protein 3a	BROMODOMAIN-CONTAINING PROTEIN 3A		3	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os03g0130800	LOC_Os03g03870.1				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009066 - anther 
25899	BRD3B	OsBrd3b, Brd3b	BROMODOMAIN-CONTAINING PROTEIN 3B	bromodomain-containing protein 3b	BROMODOMAIN-CONTAINING PROTEIN 3B		9		 Tolerance and resistance - Stress tolerance	Os09g0550000	LOC_Os09g37760.1				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	PO:0009066 - anther 
25900	BRD4A	OsBrd4a, Brd4a	BROMODOMAIN-CONTAINING PROTEIN 4A	bromodomain-containing protein 4a	BROMODOMAIN-CONTAINING PROTEIN 4A		1	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os01g0214300	LOC_Os01g11580.1, LOC_Os01g11580.2				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009005 - root 
25901	BRD5A	OsBrd5a, Brd5a	BROMODOMAIN-CONTAINING PROTEIN 5A	bromodomain-containing protein 5a	BROMODOMAIN-CONTAINING PROTEIN 5A		6		 Tolerance and resistance - Stress tolerance	Os06g0355500	LOC_Os06g24870.1, LOC_Os06g24870.3, LOC_Os06g24870.2				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009066 - anther 
25902	BRD5B	OsBrd5b, Brd5b	BROMODOMAIN-CONTAINING PROTEIN 5B	bromodomain-containing protein 5b	BROMODOMAIN-CONTAINING PROTEIN 5B		8	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0109500	LOC_Os08g01794.2, LOC_Os08g01794.1				GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0003677 - DNA binding	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009066 - anther 
25903	BRD8	OsBrd8, Brd8	BROMODOMAIN-CONTAINING PROTEIN 8	bromodomain-containing protein 8	BROMODOMAIN-CONTAINING PROTEIN 8		7			Os07g0565300	LOC_Os07g37800.3, LOC_Os07g37800.1, LOC_Os07g37800.2						PO:0009066 - anther 
25904	BRDST1	OsBrdST1, BrdST1	BROMODOMAIN-CONTAINING PROTEIN ST1	bromodomain-containing protein singleton member 1, bromodomain-containing protein ST1	BROMODOMAIN-CONTAINING PROTEIN ST1		1		 Tolerance and resistance - Stress tolerance	Os01g0648700	LOC_Os01g46040.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
25905	BRDST3	OsBrdST3, BrdST3	BROMODOMAIN-CONTAINING PROTEIN ST3	bromodomain-containing protein singleton member 3, bromodomain-containing protein ST3	BROMODOMAIN-CONTAINING PROTEIN ST3		3			Os03g0332366	LOC_Os03g21450.1						
25906	BRD9	OsBrd9, Brd9	BROMODOMAIN-CONTAINING PROTEIN 9	bromodomain-containing protein 9	BROMODOMAIN-CONTAINING PROTEIN 9		6	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os06g0138000	LOC_Os06g04640.2, LOC_Os06g04640.1, LOC_Os06g04640.3				GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0005360 - aleurone layer , PO:0009010 - seed , PO:0009066 - anther 
25907	BRD12	OsBrd12, Brd12	BROMODOMAIN-CONTAINING PROTEIN 12	bromodomain-containing protein 12	BROMODOMAIN-CONTAINING PROTEIN 12		7	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os07g0507700	LOC_Os07g32420.1, LOC_Os07g32420.3, LOC_Os07g32420.2				GO:0009414 - response to water deprivation, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0005360 - aleurone layer , PO:0009006 - shoot system 
25908	BRD13	OsBrd13, Brd13, OsCDC48-8, CDC48-8	BROMODOMAIN-CONTAINING PROTEIN 13	bromodomain-containing protein 13, Cell Division Cycle 48-8	BROMODOMAIN-CONTAINING PROTEIN 13		9	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os09g0515100	LOC_Os09g33980.1				GO:0046686 - response to cadmium ion, GO:0005634 - nucleus, GO:0003682 - chromatin binding, GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0080111 - DNA demethylation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter, GO:0042393 - histone binding, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0009005 - root , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009006 - shoot system 
25909	BRDPG3A	OsBrdPG3a, BrdPG3a	BROMODOMAIN-CONTAINING PROTEIN PG3A	bromodomain-containing protein paralog group 3 member a, bromodomain-containing protein PG3a	BROMODOMAIN-CONTAINING PROTEIN PG3A		4		 Tolerance and resistance - Stress tolerance	Os04g0622800	LOC_Os04g53130.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
25910	BRDPG3B	OsBrdPG3b, BrdPG3b	BROMODOMAIN-CONTAINING PROTEIN PG3B	bromodomain-containing protein paralog group 3 member b, bromodomain-containing protein PG3b	BROMODOMAIN-CONTAINING PROTEIN PG3B		4	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os04g0623100	LOC_Os04g53170.1				GO:0046686 - response to cadmium ion, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009005 - root , PO:0009006 - shoot system , PO:0009049 - inflorescence , PO:0005360 - aleurone layer , PO:0009030 - carpel , PO:0009066 - anther 
25911	BRDPG3C	OsBrdPG3c, BrdPG3c	BROMODOMAIN-CONTAINING PROTEIN PG3C	bromodomain-containing protein paralog group 3 member c, bromodomain-containing protein PG3c	BROMODOMAIN-CONTAINING PROTEIN PG3C		8	PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0192800	LOC_Os08g09340.1, LOC_Os08g09340.2				GO:0046686 - response to cadmium ion, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0009006 - shoot system , PO:0009005 - root , PO:0009010 - seed , PO:0009066 - anther , PO:0009030 - carpel , PO:0009049 - inflorescence 
25912	AAD	OsAAD	AMINO ACID DEHYDROGENASE 	amino acid dehydrogenase	AMINO ACID DEHYDROGENASE 	aad, aad-6, aad-7	9	GO:0035999: tetrahydrofolate interconversion. TO:0020102: phosphate content.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os09g0327300	LOC_Os09g15810.1				GO:0009740 - gibberellic acid mediated signaling, GO:0009685 - gibberellin metabolic process, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0010336 - gibberellic acid homeostasis, GO:0006795 - regulation of phosphorus utilization, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity, GO:0006730 - one-carbon metabolic process, GO:0005829 - cytosol, GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity	TO:0000143 - relative biomass, TO:0000346 - tiller number, TO:0000457 - total biomass yield, TO:0000102 - phosphorus sensitivity, TO:0001024 - phosphorus content, TO:0000627 - relative phosphorus utilization efficiency, TO:0000396 - grain yield, TO:0000357 - growth and development trait, TO:0000644 - relative root dry weight, TO:0000636 - relative shoot dry weight, TO:0000078 - root dry weight, TO:0000552 - shoot dry weight	PO:0025034 - leaf 
25913	_	OsRPL24A, RPL24A	_	Ribosomal protein L24A			5	GO:0002181: cytoplasmic translation.		Os05g0486700 	LOC_Os05g40820.1, LOC_Os05g40820.2, LOC_Os05g40820.3				GO:0006412 - translation, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0003729 - mRNA binding		
25914	_	OsRPL24A, RPL24A	_	Ribosomal protein L24A			7	GO:0002181: cytoplasmic translation.		Os07g0224000 	LOC_Os07g12250.1				GO:0006412 - translation, GO:0003729 - mRNA binding, GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit		
25915	_	OsRPL24B, RPL24B	_	Ribosomal protein L24B			1			Os01g0514000 	LOC_Os01g33050.1, LOC_Os01g33050.2				GO:0005840 - ribosome		
25916	_	OsRPL24B, RPL24B	_	Ribosomal protein L24B			7			Os07g0292800 	LOC_Os07g19190.1				GO:0005730 - nucleolus, GO:0005840 - ribosome, GO:0042273 - ribosomal large subunit biogenesis		
25917	_	OsAKR1, AKR1	_	Aldo-Keto Reductase 1, Group 1 Aldo-Keto Reductase			9		 Biochemical character	Os09g0567366	LOC_Os09g39390.1						
25918	_	OsAKR2, AKR2	_	Group 2 Aldo-Keto Reductase			7	one of three members of Group 2 Aldo-Keto Reductase.	 Biochemical character	Os07g0142900	LOC_Os07g04990.1, LOC_Os07g04990.2				GO:0016491 - oxidoreductase activity		
25919	_	OsAKR2, AKR2	_	Group 2 Aldo-Keto Reductase			10	one of three members of Group 2 Aldo-Keto Reductase.	 Biochemical character	Os10g0517400	LOC_Os10g37330.1				GO:0005737 - cytoplasm, GO:0016491 - oxidoreductase activity, GO:0004033 - aldo-keto reductase activity		
25920	_	OsAKR3, AKR3	_	Group 3 Aldo-Keto Reductase			3	one of eight members of Group 3 Aldo-Keto Reductase.	 Biochemical character	Os03g0611200	LOC_Os03g41510.1, LOC_Os03g41510.2, LOC_Os03g41510.3, LOC_Os03g41510.4, LOC_Os03g41510.5				GO:0016491 - oxidoreductase activity		
25921	_	OsAKR3, AKR3	_	Group 3 Aldo-Keto Reductase			4	Q0JE32. one of eight members of Group 3 Aldo-Keto Reductase.	 Biochemical character	Os04g0337500	LOC_Os04g26870.1				GO:0016491 - oxidoreductase activity, GO:0005737 - cytoplasm, GO:0004033 - aldo-keto reductase activity		
25922	_	OsAKR3, AKR3	_	Group 3 Aldo-Keto Reductase			10	one of eight members of Group 3 Aldo-Keto Reductase.	 Biochemical character	Os10g0419100	LOC_Os10g28320.3, LOC_Os10g28320.4, LOC_Os10g28320.1, LOC_Os10g28320.2				GO:0004033 - aldo-keto reductase activity, GO:0005737 - cytoplasm		
25923	_	OsAKR3, AKR3	_	Group 3 Aldo-Keto Reductase			11	one of eight members of Group 3 Aldo-Keto Reductase.	 Biochemical character	Os11g0645200	LOC_Os11g42540.1, LOC_Os11g42540.2						
25924	_	OsAKR3, AKR3	_	Group 3 Aldo-Keto Reductase			12	one of eight members of Group 3 Aldo-Keto Reductase.	 Biochemical character	Os12g0482700	LOC_Os12g29760.1, LOC_Os12g29760.2				GO:0010349 - L-galactose dehydrogenase activity, GO:0019853 - L-ascorbic acid biosynthetic process		
25925	_	OsAKR5, AKR5	_	Group 5 Aldo-Keto Reductase			4	one of eight members of Group 5 Aldo-Keto Reductase.	 Biochemical character	Os04g0167800	LOC_Os04g08550.1				GO:0005829 - cytosol, GO:0004032 - aldehyde reductase activity, GO:0016491 - oxidoreductase activity		
25926	_	OsAKR5, AKR5	_	Group 5 Aldo-Keto Reductase			4	one of eight members of Group 5 Aldo-Keto Reductase.	 Biochemical character	Os04g0447500	LOC_Os04g37470.1				GO:0004032 - aldehyde reductase activity, GO:0005829 - cytosol, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		
25927	_	OsAKR5, AKR5	_	Group 5 Aldo-Keto Reductase			4	one of eight members of Group 5 Aldo-Keto Reductase.	 Biochemical character	Os04g0447600	LOC_Os04g37480.2, LOC_Os04g37480.1				GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0005829 - cytosol, GO:0004032 - aldehyde reductase activity		
25928	_	OsAKR5, AKR5	_	Group 5 Aldo-Keto Reductase			4	one of eight members of Group 5 Aldo-Keto Reductase.	 Biochemical character	Os04g0447700	LOC_Os04g37490.1				GO:0004032 - aldehyde reductase activity, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0005829 - cytosol		
25929	_	OsAKR5, AKR5	_	Group 5 Aldo-Keto Reductase			10	one of eight members of Group 5 Aldo-Keto Reductase.	 Biochemical character	Os10g0113900	LOC_Os10g02480.1, LOC_Os10g02480.2				GO:0004032 - aldehyde reductase activity, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, GO:0016491 - oxidoreductase activity, GO:0005829 - cytosol		
25930	_	OsAKR5, AKR5	_	Group 5 Aldo-Keto Reductase			10	one of eight members of Group 5 Aldo-Keto Reductase.	 Biochemical character	Os10g0114300	LOC_Os10g02490.1, LOC_Os10g02490.2				GO:0005829 - cytosol, GO:0004032 - aldehyde reductase activity, GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor		
25931	_	OsAKR, AKR	_	Aldo-Keto Reductase			4	an ungrouped Aldo-Keto Reductase.	 Biochemical character	Os04g0337800	LOC_Os04g26890.1				GO:0005829 - cytosol, GO:0004032 - aldehyde reductase activity		
25932	_	OsAKR, AKR	_	Aldo-Keto Reductase			4	an ungrouped Aldo-Keto Reductase.	 Biochemical character	Os04g0338100	LOC_Os04g26920.3, LOC_Os04g26920.1, LOC_Os04g26920.2						
25933	_	OsAKR, AKR	_	Aldo-Keto Reductase			4	an ungrouped Aldo-Keto Reductase.	 Biochemical character	Os04g0341100	LOC_Os04g27300.1						
25934	SNRT2.3-1	sNRT2.3-1	_	small RNA derived from the 5' untranslated region of OsNRT2.3			1	a unique small RNA  derived from the 5' untranslated region of OsNRT2.3 (LOC_Os01g50820). TO:0020100: nitrate uptake. TO:0020094: nitrate content. GO:0090352: regulation of nitrate assimilation.	 Tolerance and resistance - Stress tolerance						GO:0009408 - response to heat, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000259 - heat tolerance	PO:0009006 - shoot system 
25935	SNRT2.3-2	sNRT2.3-2	_	small RNA derived from the 5' untranslated region of OsNRT2.3			1	a unique small RNA  derived from the 5' untranslated region of OsNRT2.3 (LOC_Os01g50820). TO:0020100: nitrate uptake. TO:0020094: nitrate content. GO:0090352: regulation of nitrate assimilation.	 Tolerance and resistance - Stress tolerance						GO:0009408 - response to heat, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait, TO:0000259 - heat tolerance	PO:0009006 - shoot system 
25936	SMC1	OsSMC1	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 1	structural maintenance of chromosomes protein 6	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 1		12		 Other	Os12g0641500	LOC_Os12g44390.1				GO:0005694 - chromosome, GO:0005524 - ATP binding, GO:0051276 - chromosome organization, GO:0008278 - cohesin complex, GO:0007062 - sister chromatid cohesion, GO:0005634 - nucleus, GO:0016887 - ATPase activity		
25937	_	GAPDH	_	glyceraldehyde-3-phosphate dehydrogenase			4		 Biochemical character	Os04g0459500	LOC_Os04g38600.4, LOC_Os04g38600.1, LOC_Os04g38600.2, LOC_Os04g38600.3				GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, GO:0051287 - NAD or NADH binding, GO:0050661 - NADP or NADPH binding, GO:0006006 - glucose metabolic process, GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity		
25938	_		_	thaumatin-like protein 1			9		 Tolerance and resistance	Os09g0536400	LOC_Os09g36580.1				GO:0006952 - defense response, GO:0016020 - membrane		
25939	_		_				2		 Tolerance and resistance - Stress tolerance	Os02g0819200	LOC_Os02g57380.2, LOC_Os02g57380.1				GO:0009408 - response to heat, GO:0009570 - chloroplast stroma	TO:0000259 - heat tolerance	
25940	_		_				5		 Tolerance and resistance - Stress tolerance	Os05g0210600	LOC_Os05g11990.2, LOC_Os05g11990.1				GO:0009408 - response to heat, GO:0043229 - intracellular organelle, GO:0005737 - cytoplasm	TO:0000259 - heat tolerance	
25941	_	OsNADK	_	NAD kinase			11	Q53NI2.	 Tolerance and resistance - Stress tolerance	Os11g0191400	LOC_Os11g08670.1				GO:0009507 - chloroplast, GO:0016310 - phosphorylation, GO:0019674 - NAD metabolic process, GO:0003951 - NAD+ kinase activity, GO:0005524 - ATP binding, GO:0006741 - NADP biosynthetic process, GO:0009414 - response to water deprivation, GO:0005516 - calmodulin binding	TO:0000276 - drought tolerance	
25942	_	OsNADK	_	NAD kinase			5	Q60E60.	 Tolerance and resistance - Stress tolerance	Os05g0388400	LOC_Os05g32210.1				GO:0006741 - NADP biosynthetic process, GO:0016310 - phosphorylation, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0003951 - NAD+ kinase activity, GO:0019674 - NAD metabolic process	TO:0000276 - drought tolerance	
25943	_	OsNADK	_	NAD kinase			9	Q6EQG2.	 Tolerance and resistance - Stress tolerance	Os09g0345700	LOC_Os09g17680.1				GO:0006741 - NADP biosynthetic process, GO:0005737 - cytoplasm, GO:0016310 - phosphorylation, GO:0042736 - NADH kinase activity, GO:0009414 - response to water deprivation, GO:0005524 - ATP binding, GO:0003951 - NAD+ kinase activity, GO:0019674 - NAD metabolic process	TO:0000276 - drought tolerance	
25944	GEM1	OsGEM1	GEMINI POLLEN 1	gemini pollen 1			1	Q5N749. GO:0061863: microtubule plus-end binding.		Os01g0816400	LOC_Os01g60040.1, LOC_Os01g60040.2				GO:0007052 - mitotic spindle organization, GO:0005737 - cytoplasm, GO:0000776 - kinetochore, GO:0005874 - microtubule, GO:0000922 - spindle pole, GO:0008017 - microtubule binding, GO:0030951 - establishment or maintenance of microtubule cytoskeleton polarity, GO:0046785 - microtubule polymerization		
25945	_		ATPASE 1	ATPase1	ATPASE 1		8	mitochondrial ATP synthase.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os08g0250200	LOC_Os08g15170.1				GO:0009651 - response to salt stress, GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism	TO:0006001 - salt tolerance	
25946	_		ATPASE 2	ATPase2	ATPASE 2		12	mitochondrial ATP synthase.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os12g0424180	LOC_Os12g23610.1				GO:0009651 - response to salt stress, GO:0015986 - ATP synthesis coupled proton transport, GO:0015078 - hydrogen ion transmembrane transporter activity, GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o), GO:0005753 - mitochondrial proton-transporting ATP synthase complex	TO:0006001 - salt tolerance	
25947	_		ATPASE 3	ATPase3	ATPASE 3		12	mitochondrial ATP synthase.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os12g0207500	LOC_Os12g10570.1				GO:0005753 - mitochondrial proton-transporting ATP synthase complex, GO:0009651 - response to salt stress, GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1), GO:0005524 - ATP binding, GO:0046933 - hydrogen ion transporting ATP synthase activity, rotational mechanism, GO:0046961 - proton-transporting ATPase activity, rotational mechanism, GO:0042776 - mitochondrial ATP synthesis coupled proton transport	TO:0006001 - salt tolerance	
25948	_		_	Adenosine kinase			2	GO:0044209: AMP salvage.	 Biochemical character	Os02g0625500	LOC_Os02g41590.1				GO:0006144 - purine base metabolic process, GO:0006166 - purine ribonucleoside salvage, GO:0016310 - phosphorylation, GO:0005524 - ATP binding, GO:0004001 - adenosine kinase activity, GO:0005634 - nucleus, GO:0005829 - cytosol		
25949	AL1.1	OsAL1.1	ALFIN-LIKE 1.1	Alfin-like 1.1	ALFIN-LIKE 1.1		1	GO:0000976: transcription cis-regulatory region binding.	 Tolerance and resistance - Stress tolerance	Os01g0158800	LOC_Os01g06540.1				GO:0009723 - response to ethylene stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009269 - response to desiccation, GO:0046872 - metal ion binding, GO:0006970 - response to osmotic stress, GO:0009408 - response to heat, GO:0009409 - response to cold, GO:0006979 - response to oxidative stress, GO:0009753 - response to jasmonic acid stimulus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006325 - chromatin organization, GO:0003712 - transcription cofactor activity, GO:0042542 - response to hydrogen peroxide, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0042393 - histone binding, GO:0009739 - response to gibberellin stimulus	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	
25950	AL3	OsAL3	ALFIN-LIKE 3	Alfin-like 3, Alfin-like transcription factor 3	ALFIN-LIKE 3		3	Q84TV4. osamiR5797, osa-miR5832 target gene. GO:0000976: transcription cis-regulatory region binding.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0818300	LOC_Os03g60390.1				GO:0050832 - defense response to fungus, GO:0030912 - response to deep water, GO:0009735 - response to cytokinin stimulus, GO:0009733 - response to auxin stimulus, GO:0010446 - response to alkalinity, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0042742 - defense response to bacterium, GO:0051607 - defense response to virus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0006325 - chromatin organization, GO:0003712 - transcription cofactor activity, GO:0046872 - metal ion binding, GO:0042393 - histone binding, GO:0005634 - nucleus, GO:0009651 - response to salt stress, GO:0042542 - response to hydrogen peroxide, GO:0006979 - response to oxidative stress, GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0006970 - response to osmotic stress, GO:0009269 - response to desiccation, GO:0009737 - response to abscisic acid stimulus, GO:0009751 - response to salicylic acid stimulus, GO:0009723 - response to ethylene stimulus, GO:0009739 - response to gibberellin stimulus, GO:0009753 - response to jasmonic acid stimulus	TO:0002657 - oxidative stress, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0000095 - osmotic response sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000173 - ethylene sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000148 - viral disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000075 - light sensitivity, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance, TO:0000481 - alkali sensitivity, TO:0000163 - auxin sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000524 - submergence tolerance	PO:0009066 - anther , PO:0009030 - carpel , PO:0009010 - seed 
25951	H2B.2	OsH2B.2	HISTONE H2B.2	histone H2B.2	HISTONE H2B.2		8	Q6ZBP3.		Os08g0490900	LOC_Os08g38300.2, LOC_Os08g38300.1				GO:0046982 - protein heterodimerization activity, GO:0030527 - structural constituent of chromatin, GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding		
25952	H2B.5	OsH2B.5	HISTONE H2B.5	histone H2B.5	HISTONE H2B.5		1	Q94JE1. CT837551.		Os01g0153300	LOC_Os01g06010.1				GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0000786 - nucleosome, GO:0030527 - structural constituent of chromatin, GO:0046982 - protein heterodimerization activity		
25953	H2B.9	OsH2B.9	HISTONE H2B.9	histone H2B.9	HISTONE H2B.9		5	Q6F362. CT828267.		Os05g0574300	LOC_Os05g49860.1				GO:0030527 - structural constituent of chromatin, GO:0046982 - protein heterodimerization activity, GO:0003677 - DNA binding, GO:0005634 - nucleus, GO:0000786 - nucleosome		
25954	H2B.10	OsH2B.10	HISTONE H2B.10	histone H2B.10	HISTONE H2B.10		1	Q9LGI2. CT828154.		Os01g0152300	LOC_Os01g05900.1				GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0046982 - protein heterodimerization activity, GO:0030527 - structural constituent of chromatin		
25955	H2B.11	OsH2B.11	HISTONE H2B.11	histone H2B.11	HISTONE H2B.11		1	Q943L2. CT837605.		Os01g0839500	LOC_Os01g62230.1				GO:0003677 - DNA binding, GO:0030527 - structural constituent of chromatin, GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0046982 - protein heterodimerization activity		
25956	_	OsH2A	_	histone H2A			7	Q6ZL43. 		Os07g0545300	LOC_Os07g36130.1				GO:0030527 - structural constituent of chromatin, GO:0000786 - nucleosome, GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0046982 - protein heterodimerization activity		
25957	_		_				11	a transferase family protein.	 Biochemical character	Os11g0507200	LOC_Os11g31090.1				GO:0050734 - hydroxycinnamoyltransferase activity, GO:0010345 - suberin biosynthetic process, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006636 - unsaturated fatty acid biosynthetic process, GO:0010143 - cutin biosynthetic process		
25958	_		_				6	a peroxygenase.	 Biochemical character	 Os06g0254300	LOC_Os06g14324.1, LOC_Os06g14324.2				GO:0004497 - monooxygenase activity, GO:0010143 - cutin biosynthetic process, GO:0010345 - suberin biosynthetic process, GO:0005509 - calcium ion binding, GO:0010025 - wax biosynthetic process		
25959	CSN2	OsCSN2	COP9 SIGNALOSOME COMPLEX SUBUNIT 2	COP9 signalosome complex subunit 2, COP9 signaling complex 2	COP9 SIGNALOSOME COMPLEX SUBUNIT 2		1		 Tolerance and resistance - Stress tolerance	Os01g0279200	LOC_Os01g17180.1				GO:0009637 - response to blue light	TO:0000159 - blue light sensitivity	
25960	RBG1	OsRBG1	RESISTANCE TO BURKHOLDERIA GLUMAE 1	Resistance to Burkholderia glumae 1		RBG1res, RBG1sus	10	A MAPKKK gene.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0130000	LOC_Os10g04000.1				GO:0005524 - ATP binding, GO:0006468 - protein amino acid phosphorylation, GO:0007165 - signal transduction, GO:0042742 - defense response to bacterium, GO:0009738 - abscisic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0004672 - protein kinase activity	TO:0000615 - abscisic acid sensitivity, TO:0000315 - bacterial disease resistance	PO:0009010 - seed , PO:0009009 - plant embryo 
25961	TTL	OsTTL	TRANSTHYRETIN-LIKE PROTEIN	transthyretin-like protein	TRANSTHYRETIN-LIKE PROTEIN	Osttl, Osttl-1, Osttl- 2, Osttl-3	3	one of two causal genes of the key locus qNL3.1 associated with seed germination under salt stress. TO:0000949: seedling growth and development trait.	 Character as QTL - Germination,  Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0390700	LOC_Os03g27320.5, LOC_Os03g27320.1, LOC_Os03g27320.2, LOC_Os03g27320.3, LOC_Os03g27320.4				GO:0051997 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity, GO:0009651 - response to salt stress, GO:0019428 - allantoin biosynthetic process, GO:0001560 - regulation of cell growth by extracellular stimulus, GO:0009742 - brassinosteroid mediated signaling, GO:0009845 - seed germination, GO:0033971 - hydroxyisourate hydrolase activity, GO:0006144 - purine base metabolic process, GO:0005829 - cytosol, GO:0031234 - extrinsic to internal side of plasma membrane, GO:0005777 - peroxisome, GO:0042802 - identical protein binding	TO:0000430 - germination rate, TO:0006001 - salt tolerance	PO:0007057 - 0 seed germination stage , PO:0007022 - seed imbibition stage 
25963	EPFL4	OsEPFL4	EPIDERMAL PATTERNING FACTOR-LIKE 4	EPIDERMAL PATTERNING FACTOR-LIKE4, EPF-LIKE 4	EPIDERMAL PATTERNING FACTOR-LIKE 4		3			Os03g0672500	LOC_Os03g46930.1				GO:0005576 - extracellular region, GO:0010052 - guard cell differentiation		
25964	EPFL5	OsEPFL5	EPIDERMAL PATTERNING FACTOR-LIKE 5	EPIDERMAL PATTERNING FACTOR-LIKE5, EPF-LIKE 5	EPIDERMAL PATTERNING FACTOR-LIKE 5	osepfl5	7	TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence. TO:0000975: grain width.	 Vegetative organ - Culm,  Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os07g0132300	LOC_Os07g04020.1				GO:0016020 - membrane, GO:0010052 - guard cell differentiation, GO:0005576 - extracellular region	TO:0000397 - grain size, TO:0000207 - plant height, TO:0000382 - 1000-seed weight, TO:0000557 - secondary branch number, TO:0000396 - grain yield, TO:0000734 - grain length, TO:0000456 - spikelet number	PO:0009049 - inflorescence 
25965	EPFL6	OsEPFL6	EPIDERMAL PATTERNING FACTOR-LIKE 6	EPIDERMAL PATTERNING FACTOR-LIKE6, EPF-LIKE 6	EPIDERMAL PATTERNING FACTOR-LIKE 6	osepfl6	3	TO:0000847: panicle inflorescence morphology trait. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Panicle, Mode of branching,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Vegetative organ - Culm	Os03g0161600	LOC_Os03g06610.1				GO:0010052 - guard cell differentiation, GO:0005576 - extracellular region	TO:0000207 - plant height, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000382 - 1000-seed weight, TO:0000397 - grain size, TO:0000396 - grain yield, TO:0000456 - spikelet number, TO:0000734 - grain length	PO:0009049 - inflorescence 
25966	EPFL7	OsEPFL7	EPIDERMAL PATTERNING FACTOR-LIKE 7	EPIDERMAL PATTERNING FACTOR-LIKE7, EPF-LIKE 7	EPIDERMAL PATTERNING FACTOR-LIKE 7	osepfl7	11	TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity,  Reproductive organ - Spikelet, flower, glume, awn	Os11g0581700	LOC_Os11g37190.1				GO:0010052 - guard cell differentiation, GO:0005576 - extracellular region	TO:0000397 - grain size, TO:0000590 - grain weight, TO:0000396 - grain yield, TO:0000456 - spikelet number, TO:0000207 - plant height	PO:0009049 - inflorescence 
25967	EPFL8	OsEPFL8	EPIDERMAL PATTERNING FACTOR-LIKE 8	EPIDERMAL PATTERNING FACTOR-LIKE8, EPF-LIKE 8	EPIDERMAL PATTERNING FACTOR-LIKE 8	osepfl8	5	TO:0000847: panicle inflorescence morphology trait. TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Reproductive organ - Pollination, fertilization, fertility,  Seed - Morphological traits - Grain shape	Os05g0476400	LOC_Os05g39880.1				GO:0005576 - extracellular region, GO:0010052 - guard cell differentiation	TO:0000734 - grain length, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000382 - 1000-seed weight, TO:0000396 - grain yield, TO:0000455 - seed set percent, TO:0000456 - spikelet number, TO:0000180 - spikelet fertility, TO:0006032 - panicle size, TO:0000397 - grain size, TO:0000207 - plant height	PO:0009049 - inflorescence 
25968	EPFL9	OsEPFL9	EPIDERMAL PATTERNING FACTOR-LIKE 9	EPIDERMAL PATTERNING FACTOR-LIKE9, EPF-LIKE 9	EPIDERMAL PATTERNING FACTOR-LIKE 9	osepfl9	1	TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence.	 Reproductive organ - panicle,  Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity	Os01g0824500	LOC_Os01g60900.1				GO:0010052 - guard cell differentiation, GO:0005576 - extracellular region	TO:0000557 - secondary branch number, TO:0000456 - spikelet number, TO:0000396 - grain yield, TO:0000547 - primary branch number	PO:0009049 - inflorescence 
25970	CLC1	OsCLC1	CLATHRIN LIGHT CHAIN 1		CLATHRIN LIGHT CHAIN 1		4	Q7XKE9. GO:0072583: clathrin-dependent endocytosis.	 Tolerance and resistance - Disease resistance	Os04g0679100	LOC_Os04g58240.1				GO:0006886 - intracellular protein transport, GO:0005198 - structural molecule activity, GO:0030125 - clathrin vesicle coat, GO:0005886 - plasma membrane, GO:0032050 - clathrin heavy chain binding, GO:0030130 - clathrin coat of trans-Golgi network vesicle, GO:0050832 - defense response to fungus, GO:0030132 - clathrin coat of coated pit, GO:0016192 - vesicle-mediated transport	TO:0000074 - blast disease	
25971	FLOT1	OsFLOT1	FLOTILLIN 1	Flotillin1, OsFlotillin1	FLOTILLIN 1		10	Q9AV57. a lipid raft component involved in CIE (clathrin-independent endocytosis). GO:0072659: protein localization to plasma membrane. GO:0044853: plasma membrane raft.	 Tolerance and resistance - Disease resistance	Os10g0481500	LOC_Os10g34040.1				GO:0009663 - plasmodesma organization, GO:0005886 - plasma membrane, GO:0005901 - caveola, GO:0046740 - spread of virus in host, cell to cell, GO:0052544 - callose deposition in cell wall during defense response, GO:0051607 - defense response to virus, GO:0009506 - plasmodesma, GO:0010497 - plasmodesmata-mediated intercellular transport	TO:0000148 - viral disease resistance	
25972	AP2ALPHA	OsAP2alpha	ADAPTOR PROTEIN COMPLEX 2 SUBUNIT 2ALPHA	ADAPTOR PROTEIN COMPLEX 2 subunit 2alpha	ADAPTOR PROTEIN COMPLEX 2 SUBUNIT 2ALPHA		4	CT835180.	 Tolerance and resistance - Disease resistance	Os03g0112101/Os03g0112400	LOC_Os03g02150.2, LOC_Os03g02150.1				GO:0030117 - membrane coat, GO:0030131 - clathrin adaptor complex, GO:0050832 - defense response to fungus, GO:0006886 - intracellular protein transport, GO:0016192 - vesicle-mediated transport	TO:0000074 - blast disease	
25973	RKD1	OsRKD1	RWP-RK DOMAIN PROTEIN 1	RWP-RK Domain 1, RWP-RK transcription factor 1	RWP-RK DOMAIN PROTEIN 1		1			Os01g0246500	LOC_Os01g14420.1				GO:0005634 - nucleus, GO:0003700 - transcription factor activity, GO:0003677 - DNA binding		PO:0009005 - root , PO:0000423 - plant zygote , PO:0009006 - shoot system , PO:0005052 - plant callus , PO:0009066 - anther , PO:0025034 - leaf , PO:0009009 - plant embryo , PO:0009049 - inflorescence , PO:0009010 - seed , PO:0000084 - plant sperm cell , PO:0009030 - carpel , PO:0020094 - plant egg cell 
25974	RKD3	OsRKD3	RWP-RK DOMAIN PROTEIN 3	RWP-RK Domain 3, RWP-RK transcription factor 3	RWP-RK DOMAIN PROTEIN 3		1	GO:1905614: negative regulation of developmental vegetative growth.		Os01g0551600	LOC_Os01g37100.1				GO:0006338 - chromatin remodeling, GO:0005634 - nucleus, GO:0009790 - embryonic development, GO:0048510 - regulation of timing of transition from vegetative to reproductive phase, GO:0010262 - somatic embryogenesis, GO:0045893 - positive regulation of transcription, DNA-dependent, GO:0003700 - transcription factor activity, GO:0009294 - DNA mediated transformation, GO:0003677 - DNA binding		PO:0000423 - plant zygote , PO:0020094 - plant egg cell , PO:0000084 - plant sperm cell , PO:0025006 - gamete , PO:0025082 - reproductive shoot system 
25975	RKD4	OsRKD4	RWP-RK DOMAIN PROTEIN 4	RWP-RK Domain 4, RWP-RK transcription factor 4	RWP-RK DOMAIN PROTEIN 4		4			Os04g0564000	LOC_Os04g47640.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		PO:0005052 - plant callus , PO:0009010 - seed , PO:0009089 - endosperm , PO:0000084 - plant sperm cell , PO:0009049 - inflorescence 
25976	RKD5	OsRKD5	RWP-RK DOMAIN PROTEIN 5	RWP-RK Domain 5, RWP-RK transcription factor 5	RWP-RK DOMAIN PROTEIN 5		6			Os06g0228900/Os06g0228950	LOC_Os06g12360.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0003677 - DNA binding		PO:0000423 - plant zygote , PO:0020094 - plant egg cell , PO:0005052 - plant callus , PO:0000084 - plant sperm cell 
25977	RKD6	OsRKD6	RWP-RK DOMAIN PROTEIN 6	RWP-RK Domain 6, RWP-RK transcription factor 6	RWP-RK DOMAIN PROTEIN 6		2			Os02g0744950	LOC_Os02g51090.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0000084 - plant sperm cell , PO:0020094 - plant egg cell 
25978	RKD7	OsRKD7	RWP-RK DOMAIN PROTEIN 7	RWP-RK Domain 7, RWP-RK transcription factor 7	RWP-RK DOMAIN PROTEIN 7		8			Os08g0294800	LOC_Os08g19820.1				GO:0005634 - nucleus, GO:0003677 - DNA binding, GO:0003700 - transcription factor activity		PO:0000084 - plant sperm cell 
25979	RKD8	OsRKD8	RWP-RK DOMAIN PROTEIN 8	RWP-RK Domain 8, RWP-RK transcription factor 8	RWP-RK DOMAIN PROTEIN 8		12			Os12g0231500	LOC_Os12g12970.1						PO:0000423 - plant zygote , PO:0000084 - plant sperm cell 
25980	RKD9	OsRKD9	RWP-RK DOMAIN PROTEIN 9	RWP-RK Domain 9, RWP-RK transcription factor 9	RWP-RK DOMAIN PROTEIN 9		9			Os09g0444100	LOC_Os09g27190.1				GO:0003700 - transcription factor activity, GO:0003677 - DNA binding, GO:0005634 - nucleus		PO:0000423 - plant zygote , PO:0000084 - plant sperm cell 
25981	SPR9	OsSPR9, RPL36-2, OsRPL36-2	SPREADING PANICLE 9	Spreading Panicle 9, 60S ribosomal protein L36-2	60S RIBOSOMAL PROTEIN L36-2	spr9	5	GO:0002181: cytoplasmic translation. GO:1990904: ribonucleoprotein complex. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Disease resistance,  Reproductive organ - panicle	Os05g0459900	LOC_Os05g38520.2, LOC_Os05g38520.4, LOC_Os05g38520.3, LOC_Os05g38520.1				GO:0005840 - ribosome, GO:0022625 - cytosolic large ribosomal subunit, GO:0006412 - translation, GO:0003735 - structural constituent of ribosome	TO:0020001 - panicle compactness and shape, TO:0000129 - false smut disease resistance	PO:0005052 - plant callus , PO:0009049 - inflorescence , PO:0009006 - shoot system , PO:0025034 - leaf , PO:0009010 - seed , PO:0009005 - root 
25982	HRC	OsHRC	HISTIDINE-RICH CALCIUM-BINDING PROTEIN	histidine-rich calcium-binding protein	HISTIDINE-RICH CALCIUM-BINDING PROTEIN		1	GO:1901141: regulation of lignin biosynthetic process.	 Tolerance and resistance - Disease resistance	Os01g0120700	LOC_Os01g03060.1, LOC_Os01g03060.2, LOC_Os01g03060.3				GO:0050832 - defense response to fungus, GO:0009809 - lignin biosynthetic process	TO:0000733 - lignin biosynthesis trait, TO:0000074 - blast disease, TO:0000731 - lignin content	
25983	DIR1	OsDIR1, OsjDIR1	DIRIGENT 1	Dirigent 1, DIR domain protein 1	DIRIGENT 1		1			Os01g0155300	LOC_Os01g06250.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
25984	DIR2	OsDIR2, OsjDIR2	DIRIGENT 2	Dirigent 2, DIR domain protein 2	DIRIGENT 2		1			Os01g0351500	LOC_Os01g24960.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
25985	DIR4	OsDIR4, OsjDIR4	DIRIGENT 4	Dirigent 4, DIR domain protein 4	DIRIGENT 4		1		 Tolerance and resistance - Stress tolerance		LOC_Os01g26340.1				GO:0006970 - response to osmotic stress	TO:0000095 - osmotic response sensitivity	
25986	DIR5	OsDIR5, OsjDIR5	DIRIGENT 5	Dirigent 5, DIR domain protein 5	DIRIGENT 5		1			Os01g0837400	LOC_Os01g62030.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		PO:0009047 - stem 
25987	DIR6	OsDIR6, OsjDIR6	DIRIGENT 6	Dirigent 6, DIR domain protein 6	DIRIGENT 6		1			Os01g0879200	LOC_Os01g65700.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
25988	DIR7	OsDIR7, OsjDIR7	DIRIGENT 7	Dirigent 7, DIR domain protein 7	DIRIGENT 7		1			Os01g0879300	LOC_Os01g65710.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
25989	DIR8	OsDIR8, OsjDIR8	DIRIGENT 8	Dirigent 8, DIR domain protein 8	DIRIGENT 8		3			Os03g0143900	LOC_Os03g05030.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
25990	DIR9	OsDIR9, OsjDIR9	DIRIGENT 9	Dirigent 9, DIR domain protein 9	DIRIGENT 9		3			Os03g0280750	LOC_Os03g17220.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
25991	DIR10	OsDIR10, OsjDIR10	DIRIGENT 10	Dirigent 10, DIR domain protein 10	DIRIGENT 10		3			Os03g0400200	LOC_Os03g28190.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
25992	DIR12	OsDIR12, OsjDIR12	DIRIGENT 12	Dirigent 12, DIR domain protein 12	DIRIGENT 12		4		 Tolerance and resistance - Disease resistance	Os04g0666800	LOC_Os04g57130.1				GO:0048046 - apoplast, GO:0050832 - defense response to fungus, GO:0009699 - phenylpropanoid biosynthetic process	TO:0000255 - sheath blight disease resistance	
25993	DIR13	OsDIR13, OsjDIR13	DIRIGENT 13	Dirigent 13, DIR domain protein 13	DIRIGENT 13		7		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os07g0106700	LOC_Os07g01600.1				GO:0050832 - defense response to fungus, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0006995 - cellular response to nitrogen starvation, GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast	TO:0000102 - phosphorus sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000011 - nitrogen sensitivity	
25994	DIR14	OsDIR14, OsjDIR14	DIRIGENT 14	Dirigent 14, DIR domain protein 14	DIRIGENT 14		7			Os07g0106900/Os07g0107100	LOC_Os07g01620.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
25995	DIR15	OsDIR15, OsjDIR15	DIRIGENT 15	Dirigent 15, DIR domain protein 15	DIRIGENT 15		7	GO:0120126: response to copper ion starvation. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0107300	LOC_Os07g01660.1				GO:0050832 - defense response to fungus, GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process, GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0046686 - response to cadmium ion	TO:0000102 - phosphorus sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000011 - nitrogen sensitivity, TO:0000021 - copper sensitivity	
25996	DIR17	OsDIR17, OsjDIR17	DIRIGENT 17	Dirigent 17, DIR domain protein 17	DIRIGENT 17		7			Os07g0617100	LOC_Os07g42520.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
25997	DIR18	OsDIR18, OsjDIR18	DIRIGENT 18	Dirigent 18, DIR domain protein 18	DIRIGENT 18		7			Os07g0617500	LOC_Os07g42570.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
25998	DIR19	OsDIR19, OsjDIR19	DIRIGENT 19	Dirigent 19, DIR domain protein 19	DIRIGENT 19		7				LOC_Os07g44250.1						
25999	DIR20	OsDIR20, OsjDIR20	DIRIGENT 20	Dirigent 20, DIR domain protein 20	DIRIGENT 20		7				LOC_Os07g44260.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
26000	DIR21	OsDIR21, OsjDIR21	DIRIGENT 21	Dirigent 21, DIR domain protein 21	DIRIGENT 21		7		 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os07g0636800	LOC_Os07g44280.1				GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0050832 - defense response to fungus, GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast	TO:0000255 - sheath blight disease resistance, TO:0000011 - nitrogen sensitivity, TO:0000102 - phosphorus sensitivity	
26001	DIR22	OsDIR22, OsjDIR22	DIRIGENT 22	Dirigent 22, DIR domain protein 22	DIRIGENT 22		7	CT837726. GO:0120126: response to copper ion starvation. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os07g0637700	LOC_Os07g44370.1				GO:0048046 - apoplast, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0046686 - response to cadmium ion, GO:0009699 - phenylpropanoid biosynthetic process	TO:0000102 - phosphorus sensitivity, TO:0000021 - copper sensitivity	
26002	DIR23	OsDIR23, OsjDIR23	DIRIGENT 23	Dirigent 23, DIR domain protein 23	DIRIGENT 23		7				LOC_Os07g44380.1						
26003	DIR24	OsDIR24, OsjDIR24	DIRIGENT 24	Dirigent 24, DIR domain protein 24	DIRIGENT 24		7	GO:0120126: response to copper ion starvation. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os07g0638500	LOC_Os07g44450.1				GO:0048046 - apoplast, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0046686 - response to cadmium ion, GO:0009699 - phenylpropanoid biosynthetic process, GO:0006995 - cellular response to nitrogen starvation	TO:0000011 - nitrogen sensitivity, TO:0000021 - copper sensitivity, TO:0000102 - phosphorus sensitivity	
26004	DIR25	OsDIR25, OsjDIR25	DIRIGENT 25	Dirigent 25, DIR domain protein 25	DIRIGENT 25		7		 Tolerance and resistance - Stress tolerance		LOC_Os07g44930.1				GO:0048046 - apoplast, GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0009699 - phenylpropanoid biosynthetic process	TO:0000011 - nitrogen sensitivity	
26005	DIR26	OsDIR26, OsjDIR26	DIRIGENT 26	Dirigent 26, DIR domain protein 26	DIRIGENT 26		8				LOC_Os08g26110.1						
26006	DIR27	OsDIR27, OsjDIR27	DIRIGENT 27	Dirigent 27, DIR domain protein 27	DIRIGENT 27		8				LOC_Os08g26180.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
26007	DIR28	OsDIR28, OsjDIR28	DIRIGENT 28	Dirigent 28, DIR domain protein 28	DIRIGENT 28		8				LOC_Os08g26560.1						
26008	DIR29	OsDIR29, OsjDIR29	DIRIGENT 29	Dirigent 29, DIR domain protein 29	DIRIGENT 29		8	GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0375400	LOC_Os08g28790.1				GO:0016036 - cellular response to phosphate starvation, GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process, GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0050832 - defense response to fungus	TO:0000011 - nitrogen sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000021 - copper sensitivity, TO:0000255 - sheath blight disease resistance	
26009	DIR30	OsDIR30, OsjDIR30	DIRIGENT 30	Dirigent 30, DIR domain protein 30	DIRIGENT 30		10	GO:0071704: organic substance metabolic process. GO:1990641: response to iron ion starvation. 	 Tolerance and resistance - Stress tolerance	Os10g0333700	LOC_Os10g18760.1				GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0048046 - apoplast, GO:0044249 - cellular biosynthetic process, GO:0016036 - cellular response to phosphate starvation, GO:0016020 - membrane	TO:0000224 - iron sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000011 - nitrogen sensitivity	
26010	DIR31	OsDIR31, OsjDIR31	DIRIGENT 31	Dirigent 31, DIR domain protein 31	DIRIGENT 31		10	GO:1990641: response to iron ion starvation. 	 Tolerance and resistance - Stress tolerance	Os10g0334500	LOC_Os10g18820.1				GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process	TO:0000102 - phosphorus sensitivity, TO:0000224 - iron sensitivity	
26011	DIR32	OsDIR32, OsjDIR32	DIRIGENT 32	Dirigent 32, DIR domain protein 32	DIRIGENT 32		10	CT835723.	 Tolerance and resistance - Stress tolerance	Os10g0335000	LOC_Os10g18870.1				GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast	TO:0000102 - phosphorus sensitivity	
26012	DIR33	OsDIR33, OsjDIR33	DIRIGENT 33	Dirigent 33, DIR domain protein 33	DIRIGENT 33		10	GO:0120126: response to copper ion starvation. GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os10g0398100	LOC_Os10g25870.1				GO:0048046 - apoplast, GO:0042594 - response to starvation, GO:0046686 - response to cadmium ion, GO:0016036 - cellular response to phosphate starvation, GO:0009699 - phenylpropanoid biosynthetic process	TO:0000021 - copper sensitivity, TO:0000102 - phosphorus sensitivity	
26013	DIR34	OsDIR34, OsjDIR34	DIRIGENT 34	Dirigent 34, DIR domain protein 34	DIRIGENT 34		10	GO:0071704: organic substance metabolic process.		Os10g0398600	LOC_Os10g25900.1				GO:0044249 - cellular biosynthetic process, GO:0048046 - apoplast		
26014	DIR35	OsDIR35, OsjDIR35, OsSSP1, SSP1	DIRIGENT 35	Dirigent 35, DIR domain protein 35, secretory small protein 1	DIRIGENT 35	ssp1-7, ssp1-13, ssp1-25	11	GO:0072732: cellular response to calcium ion starvation. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Tolerance and resistance - Disease resistance	Os11g0178800	LOC_Os11g07670.1				GO:0042594 - response to starvation, GO:0042742 - defense response to bacterium, GO:0002253 - activation of immune response, GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process, GO:0005886 - plasma membrane, GO:0002679 - respiratory burst during defense response, GO:0050832 - defense response to fungus	TO:0000605 - hydrogen peroxide content, TO:0000203 - bacterial leaf streak disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000006 - calcium sensitivity, TO:0000021 - copper sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000357 - growth and development trait, TO:0000074 - blast disease	
26015	DIR36	OsDIR36, OsjDIR36	DIRIGENT 36	Dirigent 36, DIR domain protein 36	DIRIGENT 36		11		 Tolerance and resistance - Disease resistance	Os11g0179000	LOC_Os11g07680.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance	
26016	DIR37	OsDIR37, OsjDIR37	DIRIGENT 37	Dirigent 37, DIR domain protein 37	DIRIGENT 37		11		 Tolerance and resistance - Disease resistance		LOC_Os11g07690.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance	
26017	DIR38	OsDIR38, OsjDIR38	DIRIGENT 38	Dirigent 38, DIR domain protein 38	DIRIGENT 38		11			Os11g0179400	LOC_Os11g07710.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
26018	DIR39	OsDIR39, OsjDIR39	DIRIGENT 39	Dirigent 39, DIR domain protein 39	DIRIGENT 39		11			Os11g0179500	LOC_Os11g07740.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
26019	DIR40	OsDIR40, OsjDIR40	DIRIGENT 40	Dirigent 40, DIR domain protein 40	DIRIGENT 40		11			Os11g0179700	LOC_Os11g07770.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
26020	DIR41	OsDIR41, OsjDIR41	DIRIGENT 41	Dirigent 41, DIR domain protein 41	DIRIGENT 41		11	GO:0072732: cellular response to calcium ion starvation. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance	Os11g0180000	LOC_Os11g07830.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0042594 - response to starvation, GO:0048046 - apoplast, GO:0006995 - cellular response to nitrogen starvation	TO:0000006 - calcium sensitivity, TO:0000011 - nitrogen sensitivity, TO:0000021 - copper sensitivity	
26021	DIR42	OsDIR42, OsjDIR42	DIRIGENT 42	Dirigent 42, DIR domain protein 42	DIRIGENT 42		11	GO:0071704: organic substance metabolic process.		Os11g0214100	LOC_Os11g10790.1				GO:0044249 - cellular biosynthetic process, GO:0048046 - apoplast, GO:0016020 - membrane		
26022	DIR43	OsDIR43, OsjDIR43	DIRIGENT 43	Dirigent 43, DIR domain protein 43	DIRIGENT 43		11			Os11g0214400	LOC_Os11g10800.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
26023	DIR44	OsDIR44, OsjDIR44	DIRIGENT 44	Dirigent 44, DIR domain protein 44	DIRIGENT 44		11			Os11g0214900	LOC_Os11g10850.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		PO:0020103 - flag leaf 
26024	DIR45	OsDIR45, OsjDIR45	DIRIGENT 45	Dirigent 45, DIR domain protein 45	DIRIGENT 45		11			Os11g0215100	LOC_Os11g10870.1				GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process		
26025	DIR46	OsDIR46, OsjDIR46	DIRIGENT 46	Dirigent 46, DIR domain protein 46	DIRIGENT 46		11		 Tolerance and resistance - Stress tolerance	Os11g0464600	LOC_Os11g27620.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0048046 - apoplast	TO:0000011 - nitrogen sensitivity	
26026	DIR47	OsDIR47, OsjDIR47	DIRIGENT 47	Dirigent 47, DIR domain protein 47	DIRIGENT 47		11			Os11g0616100	LOC_Os11g40180.1				GO:0005524 - ATP binding, GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast, GO:0006468 - protein amino acid phosphorylation, GO:0004672 - protein kinase activity		
26027	DIR49	OsDIR49, OsjDIR49	DIRIGENT 49	Dirigent 49, DIR domain protein 49	DIRIGENT 49		11	GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance	Os11g0645400	LOC_Os11g42550.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast	TO:0000021 - copper sensitivity	
26028	DIR50	OsDIR50, OsjDIR50	DIRIGENT 50	Dirigent 50, DIR domain protein 50	DIRIGENT 50		12	CT835590.		Os12g0174700	LOC_Os12g07580.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast		
26029	JRL27	DIR51, OsDIR51, OsjDIR51, OsJRL27	JACALIN-RELATED LECTIN 27	Dirigent 51, DIR domain protein 51, Jacalin-related lectin 27	JACALIN-RELATED LECTIN 27		12			Os12g0198700	LOC_Os12g09700.1				GO:0009699 - phenylpropanoid biosynthetic process, GO:0030246 - carbohydrate binding, GO:0048046 - apoplast		
26030	DIR52	OsDIR52, OsjDIR52	DIRIGENT 52	Dirigent 52, DIR domain protein 52	DIRIGENT 52		12	GO:0071704: organic substance metabolic process.		Os12g0199000	LOC_Os12g09720.1				GO:0044249 - cellular biosynthetic process, GO:0009699 - phenylpropanoid biosynthetic process, GO:0048046 - apoplast, GO:0030246 - carbohydrate binding		
26031	DIR53	OsDIR53, OsjDIR53	DIRIGENT 53	Dirigent 53, DIR domain protein 53	DIRIGENT 53		12	CT835530. GO:0072732: cellular response to calcium ion starvation. GO:0120126: response to copper ion starvation.	 Tolerance and resistance - Stress tolerance	Os12g0227500	LOC_Os12g12600.1				GO:0042594 - response to starvation, GO:0048046 - apoplast, GO:0009699 - phenylpropanoid biosynthetic process	TO:0000021 - copper sensitivity, TO:0000006 - calcium sensitivity	
26033	JRL8	OsJRL40, JRL40, OsJRL08, JRL08, OsJRL8	JACALIN-RELATED LECTIN 8	Jacalin-Related Lectin 40	JACALIN-RELATED LECTIN 8	osjrl40	4	OsJRL40 in Gao et al. 2023. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os04g0123600	LOC_Os04g03360.1				GO:0009651 - response to salt stress, GO:0030246 - carbohydrate binding, GO:0009737 - response to abscisic acid stimulus, GO:0005737 - cytoplasm, GO:0055078 - sodium ion homeostasis, GO:0055075 - potassium ion homeostasis	TO:0000615 - abscisic acid sensitivity, TO:0000525 - sodium to potassium content ratio, TO:0006001 - salt tolerance, TO:0000609 - potassium content, TO:0000605 - hydrogen peroxide content, TO:0000608 - sodium content	PO:0005352 - xylem , PO:0009047 - stem , PO:0020142 - stem internode , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009005 - root , PO:0000036 - leaf vascular system 
26034	JRL2	OsJRL02, JRL02, OsJRL2	JACALIN-RELATED LECTIN 2		JACALIN-RELATED LECTIN 2		1			Os01g0354100	LOC_Os01g25160.1				GO:0030246 - carbohydrate binding		
26035	JRL3	OsJRL03, JRL03, OsJRL3	JACALIN-RELATED LECTIN 3		JACALIN-RELATED LECTIN 3		1			Os01g0355250	LOC_Os01g25280.1				GO:0030246 - carbohydrate binding		
26036	JRL4	OsJRL04, JRL04, OsJRL4	JACALIN-RELATED LECTIN 4		JACALIN-RELATED LECTIN 4		1			Os01g0706800	LOC_Os01g51050.1				GO:0030246 - carbohydrate binding		
26037	JRL5	OsJRL05, JRL05, OsJRL5	JACALIN-RELATED LECTIN 5		JACALIN-RELATED LECTIN 5		2	GO:0098542: defense response to other organism.	 Tolerance and resistance	Os02g0301800	LOC_Os02g19890.2, LOC_Os02g19890.1, LOC_Os02g19890.3				GO:0030246 - carbohydrate binding, GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0051707 - response to other organism		
26038	JRL6	OsJRL06, JRL06, OsJRL6	JACALIN-RELATED LECTIN 6		JACALIN-RELATED LECTIN 6		3			Os03g0399800	LOC_Os03g28160.1, LOC_Os03g28160.2				GO:0030246 - carbohydrate binding		
26039	JRL7	OsJRL07, JRL07, OsJRL7, OsJRL45, JRL45	JACALIN-RELATED LECTIN 7	Jacalin-related lectin 45	JACALIN-RELATED LECTIN 7	Osjrl45	4	OsJRL45 in Gao et al. 2023. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os04g0123125	LOC_Os04g03320.1				GO:0055075 - potassium ion homeostasis, GO:0055078 - sodium ion homeostasis, GO:0030246 - carbohydrate binding, GO:0009651 - response to salt stress, GO:0005783 - endoplasmic reticulum, GO:0006979 - response to oxidative stress	TO:0000525 - sodium to potassium content ratio, TO:0000609 - potassium content, TO:0000608 - sodium content, TO:0001034 - relative plant height, TO:0000516 - relative root length, TO:0000633 - relative total dry weight, TO:0000143 - relative biomass, TO:0001016 - relative chlorophyll content, TO:0002657 - oxidative stress, TO:0006001 - salt tolerance	PO:0025034 - leaf , PO:0000003 - whole plant , PO:0000034 - vascular system , PO:0009005 - root , PO:0009047 - stem , PO:0009049 - inflorescence 
26040	JRL9	OsJRL09, JRL09, OsJRL9	JACALIN-RELATED LECTIN 9		JACALIN-RELATED LECTIN 9		4			Os04g0200400	LOC_Os04g12390.1				GO:0030246 - carbohydrate binding		
26041	JRL10	OsJRL10	JACALIN-RELATED LECTIN 10		JACALIN-RELATED LECTIN 10		4			Os04g0295400	LOC_Os04g22900.2				GO:0030246 - carbohydrate binding		
26042	JRL11	OsJRL11, OsJRL9, JRL9	JACALIN-RELATED LECTIN 11		JACALIN-RELATED LECTIN 11		4	OsJRL9 in Wen et al. 2023. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO:0098542: defense response to other organism.  GO:0038187: pattern recognition receptor activity.	 Tolerance and resistance	Os04g0330200	LOC_Os04g26320.1				GO:0030246 - carbohydrate binding, GO:0006952 - defense response	TO:0000179 - biotic stress trait	
26043	JRL13	OsJRL13	JACALIN-RELATED LECTIN 13		JACALIN-RELATED LECTIN 13		5			Os05g0143600	LOC_Os05g05170.1				GO:0030246 - carbohydrate binding		
26044	JRL14	OsJRL14	JACALIN-RELATED LECTIN 14		JACALIN-RELATED LECTIN 14		5			Os05g0508400	LOC_Os05g43240.3, LOC_Os05g43240.1, LOC_Os05g43240.2				GO:0030246 - carbohydrate binding		
26045	JRL15	OsJRL15	JACALIN-RELATED LECTIN 15		JACALIN-RELATED LECTIN 15		6			Os06g0169001	LOC_Os06g07250.1				GO:0030246 - carbohydrate binding		
26046	JRL16	OsJRL16	JACALIN-RELATED LECTIN 16		JACALIN-RELATED LECTIN 16		6	CT836301.		Os06g0169700/Os06g0169900	LOC_Os06g07300.1				GO:0030246 - carbohydrate binding		
26047	JRL17	OsJRL17	JACALIN-RELATED LECTIN 17		JACALIN-RELATED LECTIN 17		6			Os06g0226050	LOC_Os06g12180.1				GO:0030246 - carbohydrate binding		
26048	JRL18	OsJRL18	JACALIN-RELATED LECTIN 18		JACALIN-RELATED LECTIN 18		10			Os10g0132300	LOC_Os10g04270.1				GO:0030246 - carbohydrate binding		
26049	JRL19	OsJRL19	JACALIN-RELATED LECTIN 19		JACALIN-RELATED LECTIN 19		11			Os11g0165700	LOC_Os11g06570.1				GO:0030246 - carbohydrate binding		
26050	JRL20	OsJRL20	JACALIN-RELATED LECTIN 20		JACALIN-RELATED LECTIN 20		11			Os11g0524400/Os11g0524601	LOC_Os11g32170.1				GO:0030246 - carbohydrate binding		
26051	JRL23	OsJRL23	JACALIN-RELATED LECTIN 23		JACALIN-RELATED LECTIN 23		11				LOC_Os11g39480.1						
26052	JRL26	OsJRL26	JACALIN-RELATED LECTIN 26		JACALIN-RELATED LECTIN 26		12	GO:0071704: organic substance metabolic process.		Os12g0144200	LOC_Os12g05020.1				GO:0044249 - cellular biosynthetic process, GO:0048046 - apoplast		
26053	JRL28	OsJRL28	JACALIN-RELATED LECTIN 28		JACALIN-RELATED LECTIN 28		12	GO:0071704: organic substance metabolic process.		Os12g0228700	LOC_Os12g12720.1				GO:0030246 - carbohydrate binding, GO:0048046 - apoplast, GO:0044249 - cellular biosynthetic process		
26054	RNG3	OsRNG3	RESISTANCE NEGATIVELY RELATED GENE 3	Resistance Negatively related Gene 3	RESISTANCE NEGATIVELY RELATED GENE 3	rng3, rng3-2, rng3-6	8	GO:1900425: negative regulation of defense response to bacterium. GO:0035798: 2-alkenal reductase (NADP+) activity. GO:0035671: enone reductase activity.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os08g0379400	LOC_Os08g29170.1				GO:0010319 - stromule, GO:0031348 - negative regulation of defense response, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0008270 - zinc ion binding, GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, GO:0009409 - response to cold	TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease	
26055	APY1	OsAPY1	APYRASE 1		APYRASE 1		3	Q8H7L6. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0328400	LOC_Os03g21120.1				GO:0016020 - membrane, GO:0042742 - defense response to bacterium, GO:0051607 - defense response to virus, GO:0034059 - response to anoxia, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009269 - response to desiccation, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0009134 - nucleoside diphosphate catabolic process, GO:0017110 - nucleoside-diphosphatase activity, GO:0005524 - ATP binding	TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000015 - oxygen sensitivity, TO:0000148 - viral disease resistance, TO:0000303 - cold tolerance, TO:0000524 - submergence tolerance	PO:0009010 - seed , PO:0009030 - carpel , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009049 - inflorescence 
26056	APY2	OsAPY2	APYRASE 2		APYRASE 2		3	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0378000	LOC_Os03g26080.1				GO:0046686 - response to cadmium ion, GO:0009413 - response to flooding, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0050832 - defense response to fungus, GO:0009269 - response to desiccation, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0017110 - nucleoside-diphosphatase activity, GO:0009134 - nucleoside diphosphate catabolic process	TO:0000276 - drought tolerance, TO:0000524 - submergence tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000148 - viral disease resistance, TO:0000015 - oxygen sensitivity, TO:0000259 - heat tolerance, TO:0000255 - sheath blight disease resistance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009066 - anther , PO:0009049 - inflorescence 
26057	APY4	OsAPY4	APYRASE 4		APYRASE 4		8		 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0436100	LOC_Os08g33850.2, LOC_Os08g33850.1				GO:0016787 - hydrolase activity, GO:0034059 - response to anoxia, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0017110 - nucleoside-diphosphatase activity, GO:0009134 - nucleoside diphosphate catabolic process, GO:0051607 - defense response to virus	TO:0000015 - oxygen sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000255 - sheath blight disease resistance, TO:0000148 - viral disease resistance	PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009030 - carpel 
26058	APY5	OsAPY5	APYRASE 5		APYRASE 5		10	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os10g0350500	LOC_Os10g21000.1				GO:0016787 - hydrolase activity, GO:0010446 - response to alkalinity, GO:0009413 - response to flooding, GO:0009269 - response to desiccation, GO:0010584 - pollen exine formation, GO:0009901 - anther dehiscence, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0051607 - defense response to virus, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0017110 - nucleoside-diphosphatase activity, GO:0009134 - nucleoside diphosphate catabolic process, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion	TO:0000276 - drought tolerance, TO:0000015 - oxygen sensitivity, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000148 - viral disease resistance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000303 - cold tolerance, TO:0000481 - alkali sensitivity	PO:0009089 - endosperm , PO:0009030 - carpel , PO:0009010 - seed , PO:0005052 - plant callus , PO:0009009 - plant embryo 
26059	APY6	OsAPY6	APYRASE 6		APYRASE 6		11	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0126400	LOC_Os11g03270.1				GO:0016787 - hydrolase activity, GO:0017110 - nucleoside-diphosphatase activity, GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0051607 - defense response to virus, GO:0009408 - response to heat, GO:0009269 - response to desiccation, GO:0010446 - response to alkalinity, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0046686 - response to cadmium ion, GO:0009134 - nucleoside diphosphate catabolic process	TO:0000303 - cold tolerance, TO:0000148 - viral disease resistance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000481 - alkali sensitivity	
26060	APY7	OsAPY7	APYRASE 7		APYRASE 7		11		 Tolerance and resistance - Stress tolerance	Os11g0126800	LOC_Os11g03290.1				GO:0016787 - hydrolase activity, GO:0009134 - nucleoside diphosphate catabolic process, GO:0017110 - nucleoside-diphosphatase activity, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0016020 - membrane	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	
26061	APY8	OsAPY8	APYRASE 8		APYRASE 8		10	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os11g0439600	LOC_Os11g25260.1				GO:0016020 - membrane, GO:0051607 - defense response to virus, GO:0046686 - response to cadmium ion, GO:0010446 - response to alkalinity, GO:0009413 - response to flooding, GO:0009269 - response to desiccation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0034059 - response to anoxia, GO:0009409 - response to cold, GO:0016787 - hydrolase activity, GO:0009134 - nucleoside diphosphate catabolic process, GO:0017110 - nucleoside-diphosphatase activity, GO:0005524 - ATP binding, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000203 - bacterial leaf streak disease resistance, TO:0000148 - viral disease resistance, TO:0000015 - oxygen sensitivity, TO:0000259 - heat tolerance, TO:0000074 - blast disease, TO:0006001 - salt tolerance, TO:0000524 - submergence tolerance, TO:0000481 - alkali sensitivity, TO:0000255 - sheath blight disease resistance, TO:0000303 - cold tolerance	PO:0009006 - shoot system 
26062	APY9	OsAPY9	APYRASE 9		APYRASE 9		12	Q2QYE1. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os12g0123500	LOC_Os12g02980.1, LOC_Os12g02980.2				GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0005576 - extracellular region, GO:0009134 - nucleoside diphosphate catabolic process, GO:0017110 - nucleoside-diphosphatase activity, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance	PO:0025034 - leaf , PO:0009049 - inflorescence 
26063	CPQ10	OsCPq10, CPq10	_				10	a cytochrome P450 family protein.	 Seed - Morphological traits - Grain shape	Os10g0525200	LOC_Os10g38120.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity	TO:0000397 - grain size	
26064	_		_				1	a pleiotropic locus OsGRb23906 on chromosome 1 at 10,116,371 cM.	 Character as QTL - Yield and productivity,  Reproductive organ - panicle	Os01g0283000	LOC_Os01g18060.1					TO:0000040 - panicle length, TO:0000382 - 1000-seed weight	
26065	CYP76-6	OsCYP76-6, OsCYP71AB8, CYP71AB8	P-450 76-6	Cytochrome P450 76-6	CYTOCHROME P450 76-6		3	BGIOSGA011112. OsCYP71AB8 in Sahoo et al. 2023.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0248200 	LOC_Os03g14400.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000114 - flooding related trait, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0000003 - whole plant 
26066	CYP76-15	OsCYP76-15	P-450 76-15	Cytochrome P450 76-15	CYTOCHROME P450 76-15		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0164500 	LOC_Os10g08230.1, LOC_Os10g08260.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding	TO:0000114 - flooding related trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0000003 - whole plant 
26067	CYP76-13	OsCYP76-13, OsCYP71T10, CYP71T10	P-450 76-13	Cytochrome P450 76-13	CYTOCHROME P450 76-13		9	BGIOSGA029663. OsCYP71T10 in Sahoo et al. 2023. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0447500 	LOC_Os09g27510.1				GO:0009651 - response to salt stress, GO:0020037 - heme binding, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity	TO:0000303 - cold tolerance, TO:0000114 - flooding related trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root 
26068	CYP76-14	OsCYP76-14	P-450 76-14	Cytochrome P450 76-14	CYTOCHROME P450 76-14		10		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0144700 	LOC_Os10g05490.1				GO:0016020 - membrane, GO:0009409 - response to cold, GO:0009413 - response to flooding, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	TO:0000114 - flooding related trait, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0025034 - leaf , PO:0009047 - stem , PO:0020104 - leaf sheath 
26069	CYP76-16	OsCYP76-16, OsCYP71AB1, CYP71AB1	P-450 76-16	Cytochrome P450 76-16	CYTOCHROME P450 76-16		10	BGIOSGA032580. OsCYP71AB1 in Sahoo et al. 2023. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0165300 	LOC_Os10g08319.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009413 - response to flooding, GO:0009409 - response to cold, GO:0016020 - membrane, GO:0004497 - monooxygenase activity	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000114 - flooding related trait, TO:0000276 - drought tolerance	PO:0009005 - root 
26070	CYP76-17	OsCYP76-17, OsCYP71AB2, CYP71AB2	P-450 76-17	Cytochrome P450 76-17	CYTOCHROME P450 76-17		10	BGIOSGA032583. OsCYP71AB2 in Sahoo et al. 2023.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0166600 	LOC_Os10g08474.1				GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0009413 - response to flooding	TO:0000114 - flooding related trait, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0020104 - leaf sheath , PO:0025034 - leaf 
26071	COG1	OsCOG1	CHILLING-TOLERANCE IN GENGDAO/JAPONICA RICE 1 	Chilling-tolerance in Gengdao/japonica rice 1		cog1-1, cog1-2	11	a membrane localized LRR-RLP (Leucine-rich repeat receptor like protein).	 Tolerance and resistance - Stress tolerance	Os11g0570000	LOC_Os11g36200.1, LOC_Os11g36200.2				GO:0009409 - response to cold, GO:0016301 - kinase activity, GO:0005886 - plasma membrane, GO:0005783 - endoplasmic reticulum, GO:0016310 - phosphorylation	TO:0000303 - cold tolerance	
26072	MG1	OsMG1	 M. GRAMINICOLA-RESISTANCE GENE 1 				11	a unique CC-NB-LRR protein (C61) from the nematode resistant variety ZH11 (Zhonghua 11, a japonica rice from China). Sequence analysis located MG1 within a gene cluster encoding nucleotide-binding (NB) and leucine-rich repeat (LRR) receptors (NLRs). When we compared the genome sequences of ZH11 and Nipponbare, we identified a large structural variation within our target region. The 52.2-kb region of Nipponbare contained four annotated NLR-like genes (LOC_Os11g44960 (MG1 homolog), LOC_Os11g44970, LOC_Os11g44990, and LOC_Os11g45050 (MG1 homolog)). But the nematode susceptible variety Nipponbare does not have MG1 (C61) gene. (Wang et al. 2023)	 Tolerance and resistance - Insect resistance						GO:0009600 - detection of nematode, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
26073	MRGBP	OsMRGBP	MRG DOMAIN BINDING PROTEIN 	MRG domain binding protein	MRG DOMAIN BINDING PROTEIN 	Osmrgbp	5		 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - Heading date	Os05g0512500	LOC_Os05g43680.1				GO:0006355 - regulation of transcription, DNA-dependent, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0035267 - NuA4 histone acetyltransferase complex, GO:0043189 - H4/H2A histone acetyltransferase complex, GO:2000028 - regulation of photoperiodism, flowering, GO:0016573 - histone acetylation, GO:0005634 - nucleus, GO:0043981 - histone H4-K5 acetylation	TO:0002616 - flowering time, TO:0000137 - days to heading, TO:0000346 - tiller number, TO:0000269 - 100-seed weight	PO:0009005 - root , PO:0009047 - stem , PO:0025034 - leaf 
26074	PITPALPHA	OsPitpalpha, Pitpalpha	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN ALPHA	phosphatidylinositol transfer protein alpha	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN ALPHA		3	PITP (phosphatidylinositol transfer protein) family gene, Class I PITPN.	 Biochemical character	Os03g0287100	LOC_Os03g17800.1				GO:0005548 - phospholipid transporter activity, GO:0005634 - nucleus		
26075	SEC14-1	OsSec14-1, Sec14-1	SEC14 DOMAIN PROTEIN 1	SEC14 domain protein 1, Sec14 protein 1	SEC14 DOMAIN PROTEIN 1		1	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0264700	LOC_Os01g16000.1, LOC_Os01g16000.2				GO:0008526 - phosphatidylinositol transporter activity, GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26076	SEC14-3	OsSec14-3, Sec14-3	SEC14 DOMAIN PROTEIN 3	SEC14 domain protein 3, Sec14 protein 3	SEC14 DOMAIN PROTEIN 3		1	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0874700	LOC_Os01g65380.1				GO:0005634 - nucleus, GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0008289 - lipid binding, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26077	SEC14-7	OsSec14-7, Sec14-7	SEC14 DOMAIN PROTEIN 7	SEC14 domain protein 7, Sec14 protein 7	SEC14 DOMAIN PROTEIN 7		2	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character	Os02g0200000	LOC_Os02g10650.1, LOC_Os02g10650.2				GO:0016020 - membrane		
26078	SEC14-10	OsSec14-10, Sec14-10	SEC14 DOMAIN PROTEIN 10	SEC14 domain protein 10, Sec14 protein 10	SEC14 DOMAIN PROTEIN 10		2	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0752000	LOC_Os02g51610.2, LOC_Os02g51610.3, LOC_Os02g51610.1				GO:0008526 - phosphatidylinositol transporter activity, GO:0050832 - defense response to fungus, GO:0016020 - membrane	TO:0000074 - blast disease	
26079	SEC14-11	OsSec14-11, Sec14-11	SEC14 DOMAIN PROTEIN 11	SEC14 domain protein 11, Sec14 protein 11	SEC14 DOMAIN PROTEIN 11		3	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0724100	LOC_Os03g51430.1, LOC_Os03g51430.2				GO:0008526 - phosphatidylinositol transporter activity, GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26080	SEC14-12	OsSec14-12, Sec14-12	SEC14 DOMAIN PROTEIN 12	SEC14 domain protein 12, Sec14 protein 12	SEC14 DOMAIN PROTEIN 12		3	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0850700	LOC_Os03g63370.1				GO:0050832 - defense response to fungus, GO:0016020 - membrane	TO:0000074 - blast disease	
26081	SEC14-13	OsSec14-13, Sec14-13	SEC14 DOMAIN PROTEIN 13	SEC14 domain protein 13, Sec14 protein 13	SEC14 DOMAIN PROTEIN 13		5	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0267800	LOC_Os05g18470.1				GO:0050832 - defense response to fungus, GO:0016020 - membrane, GO:0008526 - phosphatidylinositol transporter activity	TO:0000074 - blast disease	
26082	SEC14-14	OsSec14-14, Sec14-14	SEC14 DOMAIN PROTEIN 14	SEC14 domain protein 14, Sec14 protein 14	SEC14 DOMAIN PROTEIN 14		5	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. GO:1901703: protein localization involved in auxin polar transport.	 Biochemical character,  Tolerance and resistance - Disease resistance	Os05g0345100	LOC_Os05g27820.2, LOC_Os05g27820.1				GO:0016020 - membrane, GO:0050832 - defense response to fungus, GO:0008289 - lipid binding, GO:0071365 - cellular response to auxin stimulus	TO:0000074 - blast disease	
26083	SEC14-15	OsSec14-15, Sec14-15	SEC14 DOMAIN PROTEIN 15	SEC14 domain protein 15, Sec14 protein 15	SEC14 DOMAIN PROTEIN 15		5	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0429400	LOC_Os05g35460.1				GO:0051301 - cell division, GO:0007049 - cell cycle, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0008289 - lipid binding, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26084	SEC14-17	OsSec14-17, Sec14-17	SEC14 DOMAIN PROTEIN 17	SEC14 domain protein 17, Sec14 protein 17	SEC14 DOMAIN PROTEIN 17		6	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os06g0607200	LOC_Os06g40510.1				GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26085	SEC14-18	OsSec14-18, Sec14-18	SEC14 DOMAIN PROTEIN 18	SEC14 domain protein 18, Sec14 protein 18	SEC14 DOMAIN PROTEIN 18		6	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Biochemical character	Os06g0671800	LOC_Os06g45990.1, LOC_Os06g45990.2				GO:0007049 - cell cycle, GO:0051301 - cell division, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0008289 - lipid binding		
26086	SEC14-19	OsSec14-19, Sec14-19	SEC14 DOMAIN PROTEIN 19	SEC14 domain protein 19, Sec14 protein 19	SEC14 DOMAIN PROTEIN 19		7	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0456500	LOC_Os07g27310.1				GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26087	SEC14-22	OsSec14-22, Sec14-22	SEC14 DOMAIN PROTEIN 22	SEC14 domain protein 22, Sec14 protein 22	SEC14 DOMAIN PROTEIN 22		9	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os09g0258000	LOC_Os09g08390.2, LOC_Os09g08390.5, LOC_Os09g08390.4, LOC_Os09g08390.3, LOC_Os09g08390.1				GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26088	SEC14-25	OsSec14-25, Sec14-25, OsPITP6, PITP6	SEC14 DOMAIN PROTEIN 25	SEC14 domain protein 25, Sec14 protein 25, PHOSPHATIDYLINOSITOL TRANSFER PROTEIN6	SEC14 DOMAIN PROTEIN 25	ospitp6, ospitp6-1, ospitp6-2, ospitp6-3	2	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14.  the rice homolog of AtPITP7. GO:1901981: phosphatidylinositol phosphate binding.GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:0062098: regulation of programmed necrotic cell death. TO:0012004: quantum yield.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance,  Biochemical character,  Character as QTL - Plant growth activity	Os02g0321500	LOC_Os02g21630.1				GO:0055091 - phospholipid homeostasis, GO:0050832 - defense response to fungus, GO:0042594 - response to starvation, GO:0055088 - lipid homeostasis, GO:0009570 - chloroplast stroma, GO:0008526 - phosphatidylinositol transporter activity, GO:0070300 - phosphatidic acid binding, GO:0016020 - membrane, GO:0016036 - cellular response to phosphate starvation	TO:0000396 - grain yield, TO:0000074 - blast disease, TO:0000329 - tillering ability, TO:0000449 - grain yield per plant, TO:0000316 - photosynthetic ability, TO:0000495 - chlorophyll content, TO:0000516 - relative root length, TO:0000571 - shoot fresh weight, TO:0000578 - root fresh weight, TO:0000207 - plant height, TO:0000604 - fat and essential oil content, TO:0000102 - phosphorus sensitivity, TO:0000346 - tiller number, TO:0000357 - growth and development trait, TO:0000511 - phosphorus uptake	PO:0009006 - shoot system 
26089	SEC14-26	OsSec14-26, Sec14-26	SEC14 DOMAIN PROTEIN 26	SEC14 domain protein 26, Sec14 protein 26	SEC14 DOMAIN PROTEIN 26		3	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os03g0219100	LOC_Os03g11950.1				GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26090	SEC14-27	OsSec14-27, Sec14-27	SEC14 DOMAIN PROTEIN 27	SEC14 domain protein 27, Sec14 protein 27	SEC14 DOMAIN PROTEIN 27		5	PITP (phosphatidylinositol transfer protein) family gene, Class III SEC14. 	 Tolerance and resistance - Disease resistance,  Biochemical character	Os05g0267100	LOC_Os05g18294.4, LOC_Os05g18294.1, LOC_Os05g18294.2, LOC_Os05g18294.3, LOC_Os05g18294.5				GO:0016020 - membrane, GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26091	ML-1	OsML-1, ML1, OsML1	MD-2-RELATED LIPID-RECOGNITION DOMAIN PROTEIN 1	ML domain protein 1, ML protein 1, MD-2-related lipid-recognition domain protein 1, Myeloid differentiation factor-2-related lipid-recognition domain protein 1	MD-2-RELATED LIPID-RECOGNITION DOMAIN PROTEIN 1		7	PITP (phosphatidylinositol transfer protein) family gene, Class IV ML family. 	 Biochemical character,  Tolerance and resistance - Disease resistance	Os07g0159800	LOC_Os07g06590.1, LOC_Os07g06590.2, LOC_Os07g06590.3				GO:0015918 - sterol transport, GO:0005737 - cytoplasm, GO:0032934 - sterol binding, GO:0050832 - defense response to fungus, GO:0032366 - intracellular sterol transport	TO:0000074 - blast disease	
26092	ML-2	OsML-2, ML2, OsML2	MD-2-RELATED LIPID-RECOGNITION DOMAIN PROTEIN 2	ML domain protein 2, ML protein 2, MD-2-related lipid-recognition domain protein 2, Myeloid differentiation factor-2-related lipid-recognition domain protein 2	MD-2-RELATED LIPID-RECOGNITION DOMAIN PROTEIN 2		3	PITP (phosphatidylinositol transfer protein) family gene, Class IV ML family. 	 Tolerance and resistance - Disease resistance,  Biochemical character	Os03g0788200	LOC_Os03g57420.1				GO:0032366 - intracellular sterol transport, GO:0015918 - sterol transport, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0032934 - sterol binding	TO:0000074 - blast disease	
26093	PRPS2	OsPRPS2	PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE 2	Phosphoribosyl pyrophosphate synthase 2	PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE 2		6	Q69XQ6. GO:0002189: ribose phosphate diphosphokinase complex.	 Biochemical character	Os06g0617800	LOC_Os06g41360.1, LOC_Os06g41360.3, LOC_Os06g41360.4, LOC_Os06g41360.2, LOC_Os06g41360.5				GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process, GO:0004749 - ribose phosphate diphosphokinase activity, GO:0000287 - magnesium ion binding, GO:0016301 - kinase activity, GO:0005524 - ATP binding, GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0009156 - ribonucleoside monophosphate biosynthetic process, GO:0006164 - purine nucleotide biosynthetic process, GO:0016310 - phosphorylation	TO:0000615 - abscisic acid sensitivity	
26094	EPFL10	OsEPFL10	EPIDERMAL PATTERNING FACTOR-LIKE10		 EPIDERMAL PATTERNING FACTOR-LIKE10	epfl10	8	STOMAGEN paralog. GO:2000123: positive regulation of stomatal complex development. TO:0020097: stomatal opening.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Leaf	Os08g0525150	LOC_Os08g41360.1				GO:0010375 - stomatal complex patterning, GO:0030104 - water homeostasis, GO:0001659 - temperature homeostasis, GO:0009414 - response to water deprivation, GO:0010118 - stomatal movement, GO:0010374 - stomatal complex development	TO:0000276 - drought tolerance, TO:0000504 - leaf temperature, TO:0000136 - relative water content, TO:0000522 - stomatal conductance, TO:0000566 - stomatal frequency, TO:0000458 - drought recovery, TO:0000507 - osmotic adjustment capacity	
26095	GDPDL5	OsGDPDL5, OsGL5, GL5	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 5	GDPD-LIKE 5	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 5	Osgdpdl5, Osgdpdl5-1, Osgdpdl5-2, osgl5-1, osgl5-2	2		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0187400	LOC_Os02g09450.1, LOC_Os02g09450.3				GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0006629 - lipid metabolic process, GO:0009860 - pollen tube growth, GO:0006071 - glycerol metabolic process, GO:0009846 - pollen germination	TO:0000437 - male sterility, TO:0000455 - seed set percent	PO:0009066 - anther , PO:0001017 - M germinated pollen stage 
26096	GDPDL1	OsGDPDL1, OsGL1, GL1	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 1	GDPD-LIKE 1	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 1		8		 Biochemical character	Os08g0503200	LOC_Os08g39350.1				GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0006629 - lipid metabolic process, GO:0006071 - glycerol metabolic process		PO:0009066 - anther 
26097	GDPDL2	OsGDPDL2, OsGL2, GL2	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 2	GDPD-LIKE 2	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 2		2		 Biochemical character	Os02g0588500	LOC_Os02g37590.1				GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0006071 - glycerol metabolic process, GO:0006629 - lipid metabolic process		PO:0009030 - carpel 
26098	GDPDL3	OsGDPDL3, OsGL3, GL3	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 3	GDPD-LIKE 3	GLYCEROPHOSPHODIESTER PHOSPHO DIESTERASE-LIKE 3		4		 Biochemical character	Os04g0472300	LOC_Os04g39610.1, LOC_Os04g39610.2				GO:0008889 - glycerophosphodiester phosphodiesterase activity, GO:0006071 - glycerol metabolic process, GO:0006629 - lipid metabolic process		PO:0009030 - carpel 
26099	LPXC	OsLPXC	LPX FAMILY PROTEIN C	LPX family protein C	LPX FAMILY PROTEIN C	oslpxc, oslpxc1-1, oslpxc1-2, oslpxc1-3	3	an UDP-3-O-N-acetylglucosamine deacetylase. GO:0103117: UDP-3-O-acyl-N-acetylglucosamine deacetylase activity. GO:2001289: lipid X metabolic process. GO:1902882: regulation of response to oxidative stress. GO:0072593: reactive oxygen species metabolic process. GO:1903427: negative regulation of reactive oxygen species biosynthetic process. GO:2000121: regulation of removal of superoxide radicals. GO:0061691: detoxification of hydrogen peroxide.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0223900	LOC_Os03g12320.1, LOC_Os03g12320.3, LOC_Os03g12320.2				GO:0046872 - metal ion binding, GO:0009245 - lipid A biosynthetic process, GO:0006979 - response to oxidative stress, GO:0005739 - mitochondrion, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0032929 - negative regulation of superoxide release, GO:0008759 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity, GO:0045454 - cell redox homeostasis, GO:0019430 - removal of superoxide radicals, GO:0010730 - negative regulation of hydrogen peroxide biosynthetic process, GO:0009409 - response to cold	TO:0000605 - hydrogen peroxide content, TO:0002662 - leaf rolling tolerance, TO:0001016 - relative chlorophyll content, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002657 - oxidative stress, TO:0002668 - jasmonic acid content, TO:0000143 - relative biomass, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance	
26100	_		_				10	One of three hub genes in DEGs identified among AG (Anaerobic germination) stress, cold stress and conbined AG and cold stresses (Thapa et al. 2023).	 Tolerance and resistance - Stress tolerance	Os10g0505900	LOC_Os10g36180.1				GO:0009737 - response to abscisic acid stimulus, GO:0001666 - response to hypoxia, GO:0009409 - response to cold, GO:0034059 - response to anoxia, GO:0009413 - response to flooding	TO:0000114 - flooding related trait, TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance	
26101	_		_				7	CT837517. Among 15 open reading frames (ORFs) within qPH7 (QTL for Pre-harvest sprouting resistance), one ORF, Os07g0584366, exhibited upregulated expression in the resistant donor under PHS-inducing conditions.	 Character as QTL - Germination	Os07g0584366					GO:0048623 - seed germination on parent plant	TO:0000619 - vivipary	
26102	AK-HSDH2	OsAK-HSDH2	ASPARTOKINASE/HOMOSERINE DEHYDROGENASE 2	bifunctional aspartokinase/homoserine dehydrogenase 2	ASPARTOKINASE/HOMOSERINE DEHYDROGENASE 2		9		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0294000	LOC_Os09g12290.1				GO:0004412 - homoserine dehydrogenase activity, GO:0009651 - response to salt stress, GO:0009067 - aspartate family amino acid biosynthetic process, GO:0009088 - threonine biosynthetic process, GO:0016310 - phosphorylation, GO:0009086 - methionine biosynthetic process, GO:0009089 - lysine biosynthetic process via diaminopimelate, GO:0050661 - NADP or NADPH binding, GO:0005524 - ATP binding, GO:0004072 - aspartate kinase activity	TO:0006001 - salt tolerance	
26103	_	PR3	_	Pathogenesis related-3			4			Os04g0493600	LOC_Os04g41640.1				GO:0008061 - chitin binding		
26104	_	OsPR1, PR1	_	Pathogen response gene 1	_		7		 Tolerance and resistance,  Tolerance and resistance - Insect resistance	Os07g0125600	LOC_Os07g03377.1				GO:0005615 - extracellular space, GO:0009607 - response to biotic stimulus, GO:0002215 - defense response to nematode	TO:0000384 - nematode damage resistance	
26105	_	EL5	_	E3 ubiquitin-protein ligase EL5			2	Q9LRB7. GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os02g0560200					GO:0051301 - cell division, GO:0046872 - metal ion binding, GO:0004842 - ubiquitin-protein ligase activity, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0048364 - root development, GO:0016567 - protein ubiquitination, GO:0009617 - response to bacterium, GO:0009609 - response to symbiotic bacterium, GO:0016020 - membrane, GO:0005886 - plasma membrane		
26106	_	EL5	_	E3 ubiquitin-protein ligase EL5			2	Q9LRB7. GO:0061630: ubiquitin protein ligase activity.	 Biochemical character	Os02g0561400					GO:0051301 - cell division, GO:0016567 - protein ubiquitination, GO:0004842 - ubiquitin-protein ligase activity, GO:0016020 - membrane, GO:0009609 - response to symbiotic bacterium, GO:0005886 - plasma membrane, GO:0006511 - ubiquitin-dependent protein catabolic process, GO:0048364 - root development, GO:0046872 - metal ion binding, GO:0009617 - response to bacterium		
26107	LCAT3	OsLCAT3	LECITHIN-CHOLESTEROL ACYLTRANSFERASE-LIKE 3	Lecithin-cholesterol acyltransferase-like 3	LECITHIN-CHOLESTEROL ACYLTRANSFERASE-LIKE 3		9		 Biochemical character	Os09g0513100	LOC_Os09g33820.3, LOC_Os09g33820.2, LOC_Os09g33820.1				GO:0006629 - lipid metabolic process, GO:0008374 - O-acyltransferase activity		
26108	UGT1	OsUGT1	UDP-GALACTOSE TRANSPORTER 1	UDP-galactose transporter 1	UDP-GALACTOSE TRANSPORTER 1		4		 Biochemical character	Os04g0692000	LOC_Os04g59550.4, LOC_Os04g59550.5, LOC_Os04g59550.3, LOC_Os04g59550.2, LOC_Os04g59550.1				GO:0005460 - UDP-glucose transmembrane transporter activity, GO:0016020 - membrane, GO:0005794 - Golgi apparatus, GO:0015297 - antiporter activity, GO:0005459 - UDP-galactose transmembrane transporter activity		
26109	UGT4	OsUGT4	UDP-GALACTOSE TRANSPORTER 4	UDP-galactose transporter 4	UDP-GALACTOSE TRANSPORTER 4		6	GO:0072334: UDP-galactose transmembrane transport.	 Biochemical character	Os06g0593100	LOC_Os06g39260.1				GO:0016020 - membrane, GO:0015297 - antiporter activity, GO:0005460 - UDP-glucose transmembrane transporter activity, GO:0005459 - UDP-galactose transmembrane transporter activity		
26110	VSL1	Vsl1, OsVSL1	VEGETATIVE SENESCENCE LETHAL 1	vegetative senescence lethal 1	VEGETATIVE SENESCENCE LETHAL 1		8		 Character as QTL - Plant growth activity	Os08g0290100	LOC_Os08g19320.2, LOC_Os08g19320.1					TO:0000357 - growth and development trait	
26111	AET1	OsAET1	ADAPTATION TO ENVIRONMENTAL TEMPERATURE 1	Adaptation to Environmental Temperature 1	ADAPTATION TO ENVIRONMENTAL TEMPERATURE 1	aet1	5	a Dual-Function tRNAHis Guanylyltransferase. TO:0020083: stem diameter. TO:0020106: Indole-3-acetic acid content. GO:1901987: regulation of cell cycle phase transition.	 Tolerance and resistance - Stress tolerance	Os05g0535500	LOC_Os05g45890.2, LOC_Os05g45890.1				GO:0005525 - GTP binding, GO:0000287 - magnesium ion binding, GO:0008193 - tRNA guanylyltransferase activity, GO:0006400 - tRNA modification, GO:0008033 - tRNA processing, GO:0000049 - tRNA binding, GO:0009733 - response to auxin stimulus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0006417 - regulation of translation, GO:0005783 - endoplasmic reticulum, GO:0042127 - regulation of cell proliferation	TO:0000276 - drought tolerance, TO:0000472 - vascular bundle number, TO:0002672 - auxin content, TO:0006001 - salt tolerance, TO:0000357 - growth and development trait, TO:0000259 - heat tolerance, TO:0000163 - auxin sensitivity	
26112	SPD6	OsSPD6, spd6, OrSPD6	SMALL PANICLE AND DWARFNESS 6	small panicle and dwarfness 6, small panicle and dwarfness on chromosome 6			6	spd6 from wild rice (Oryza rufipogon Griff.) has pleiotropic effects on panicle number per plant, grain size, grain weight, grain number per panicle and plant height (Shan et al. 2009).	 Seed - Morphological traits - Grain shape	Os06g0140100	LOC_Os06g04820.1				GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0008168 - methyltransferase activity, GO:0032259 - methylation	TO:0000734 - grain length	
26113	PML3	OsPML3	PHOTOSYNTHESIS-AFFECTED MUTANT 71-LIKE 3 				11	Q2R4J1. GO:0071421: manganese ion transmembrane transport. GO:0090551: response to manganese starvation. TO:0020091: manganese content.TO:0006060: leaf chlorosis.	 Vegetative organ - Leaf,  Reproductive organ - Pollination, fertilization, fertility,  Tolerance and resistance - Stress tolerance	Os11g0472500	LOC_Os11g28300.3, LOC_Os11g28300.1, LOC_Os11g28300.2				GO:0042594 - response to starvation, GO:0005794 - Golgi apparatus, GO:0016020 - membrane, GO:0015085 - calcium ion transmembrane transporter activity, GO:0005384 - manganese ion transmembrane transporter activity, GO:0070588 - calcium ion transmembrane transport, GO:0032468 - Golgi calcium ion homeostasis, GO:0032472 - Golgi calcium ion transport, GO:0055071 - manganese ion homeostasis, GO:0006487 - protein amino acid N-linked glycosylation, GO:0010493 - Lewis a epitope biosynthetic process, GO:0010939 - regulation of necrotic cell death	TO:0000421 - pollen fertility, TO:0006007 - polysaccharide content, TO:0000073 - manganese sensitivity	PO:0020123 - root cap , PO:0009066 - anther , PO:0000016 - lateral root primordium , PO:0025034 - leaf 
26114	TKPR2 	OsTKPR2	TETRAKETIDE ALPHA-PYRONE REDUCTASE 2	tetraketide alpha-pyrone reductase 2	TETRAKETIDE ALPHA-PYRONE REDUCTASE 2	ostkpr2, ostkpr2-1	1		 Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os01g0127500	LOC_Os01g03670.1				GO:0080110 - sporopollenin biosynthetic process, GO:0009555 - pollen development, GO:0048653 - anther development, GO:0010584 - pollen exine formation	TO:0000437 - male sterility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
26115	GS10	OsGS10	GRAIN SIZE ON CHROMOSOME 10	Grain Size on Chromosome 10		gs10	10	GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Vegetative organ - Leaf	Os10g0522601	LOC_Os10g37850.1, LOC_Os10g37850.4, LOC_Os10g37850.3, LOC_Os10g37850.2				GO:0001558 - regulation of cell growth, GO:0009742 - brassinosteroid mediated signaling	TO:0000399 - grain thickness, TO:0000397 - grain size, TO:0002730 - grain shape, TO:0002688 - leaf lamina joint bending	
26116	CTB7	qCTB7, OsCTB7	COLD TOLERANCE AT THE BOOTING STAGE 7	Cold tolerance at the booting stage 7, Cold tolerance at the booting stage on chromosome 7		qctb7	7	a PHD-finger domain-containing protein gene. TO:1000022: anther morphology trait.	 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility	Os07g0173300	LOC_Os07g07690.1, LOC_Os07g07690.2				GO:0009409 - response to cold, GO:0009555 - pollen development, GO:0048653 - anther development	TO:0000421 - pollen fertility, TO:0000303 - cold tolerance, TO:0000180 - spikelet fertility	PO:0001004 - anther development stage , PO:0001007 - pollen development stage 
26117	YLWS	OsYLWS	YOUNG LEAF WHITE STRIPE	young leaf white stripe		ylws	3	a P-type chloroplast-targeted Pentatricopeptide repeat (PPR) protein with 11 PPR motifs.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance	Os03g0309800	LOC_Os03g19650.4, LOC_Os03g19650.3, LOC_Os03g19650.1, LOC_Os03g19650.2				GO:0009553 - embryo sac development, GO:0009409 - response to cold, GO:0042254 - ribosome biogenesis, GO:0048366 - leaf development, GO:0009658 - chloroplast organization, GO:0000373 - Group II intron splicing, GO:0048868 - pollen tube development, GO:0009555 - pollen development, GO:0009793 - embryonic development ending in seed dormancy, GO:0019843 - rRNA binding, GO:0003729 - mRNA binding, GO:0009507 - chloroplast	TO:0000069 - variegated leaf, TO:0000655 - leaf development trait, TO:0002715 - chloroplast development trait, TO:0000303 - cold tolerance	PO:0001050 - leaf development stage 
26118	DRB1	OsDRB1	DOUBLE-STRANDED RNA-BINDING PROTEIN 1	Double-stranded RNA-Binding Protein 1	DOUBLE-STRANDED RNA-BINDING PROTEIN 1		11			Os11g0119900	LOC_Os11g02720.1						
26119	RSS5	OsRSS5, OsCYBDOMG1, CYBDOMG1	RICE SALT SENSITIVE 5	Rice Salt Sensitive 5, cytochrome b561 domain-containing protein 1	CYTOCHROME B561 DOMAIN-CONTAINING PROTEIN 1	rss5, cr-1	9	a DOMON domain containing protein. GO:0140576: ascorbate homeostasis. TO:0000975: grain width. TO:0006060: leaf chlorosis.	 Tolerance and resistance - Stress tolerance,  Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity	Os09g0557700	LOC_Os09g38520.1				GO:0045454 - cell redox homeostasis, GO:0009651 - response to salt stress, GO:0005783 - endoplasmic reticulum, GO:0005886 - plasma membrane	TO:0002662 - leaf rolling tolerance, TO:0000605 - hydrogen peroxide content, TO:0020004 - shoot sodium content, TO:0000396 - grain yield, TO:0000357 - growth and development trait, TO:0006001 - salt tolerance, TO:0000590 - grain weight	PO:0009006 - shoot system , PO:0020141 - stem node 
26120	DOR1 	OsDOR1	DORMANCY 1	Dormancy 1		dor1	3	a seed-specific glycine-rich protein. GO:1902040: positive regulation of seed dormancy process.	 Seed - Physiological traits - Dormancy	Os03g0324000	LOC_Os03g20770.1				GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0010231 - maintenance of seed dormancy, GO:0010162 - seed dormancy, GO:0048623 - seed germination on parent plant, GO:0009739 - response to gibberellin stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000253 - seed dormancy, TO:0000619 - vivipary	PO:0007057 - 0 seed germination stage 
26121	DIP12 	OsDIP12	DOR1-INTERACTING PROTEIN 12	Dor1-interacting protein 12	DOR1-INTERACTING PROTEIN 12		3		 Biochemical character	Os03g0252100	LOC_Os03g14730.1				GO:0016787 - hydrolase activity		
26122	CDKF;2	OsCDKF;2	CYCLIN-DEPENDENT KINASE F;2	cyclin-dependent kinase F;2	CYCLIN-DEPENDENT KINASE F;2	cdkf;2, cdkf;2-1, cdkf;2-8, cdkf;2-13	12	Q2QSL4. GO:0106310: protein serine kinase activity. TO:0000919: grain weight. TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Biochemical character,  Seed - Morphological traits - Grain shape	Os12g0424700	LOC_Os12g23700.1				GO:0006468 - protein amino acid phosphorylation, GO:0051302 - regulation of cell division, GO:0007346 - regulation of mitotic cell cycle, GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity, GO:0004693 - cyclin-dependent protein kinase activity, GO:0005524 - ATP binding, GO:0005634 - nucleus, GO:0009742 - brassinosteroid mediated signaling, GO:0009733 - response to auxin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009734 - auxin mediated signaling pathway	TO:0000397 - grain size, TO:0000734 - grain length, TO:0002677 - brassinosteroid sensitivity, TO:0000163 - auxin sensitivity, TO:0000382 - 1000-seed weight, TO:0000399 - grain thickness, TO:0000590 - grain weight	
26123	BAP1	OsBAP1	BAK1-ASSOCIATED RECEPTOR-LIKE PROTEIN 1	BAK1-associated receptor-like protein 1	BAK1-ASSOCIATED RECEPTOR-LIKE PROTEIN 1	osbap1-cas, osbap1-cas4, osbap1-cas6	1		 Tolerance and resistance - Disease resistance	Os01g0891601	LOC_Os01g66740.1				GO:0051607 - defense response to virus, GO:0005886 - plasma membrane, GO:0031348 - negative regulation of defense response, GO:0050687 - negative regulation of defense response to virus, GO:0009867 - jasmonic acid mediated signaling pathway	TO:0000148 - viral disease resistance, TO:0000020 - black streak dwarf virus resistance	
26124	SPT4	OsSPT4	TRANSCRIPTION ELONGATION FACTOR SPT4	transcription elongation factor SPT4, SUPPRESSOR OF TY 4 homolog	TRANSCRIPTION ELONGATION FACTOR SPT4	osspt4, osspt4#17, osspt4#20	7	CT836149. GO:0080186: developmental vegetative growth.	 Reproductive organ - Pollination, fertilization, fertility,  Character as QTL - Plant growth activity	Os07g0623400	LOC_Os07g43060.1, LOC_Os07g43060.2				GO:0032786 - positive regulation of RNA elongation, GO:0008270 - zinc ion binding, GO:0005634 - nucleus, GO:0003006 - reproductive developmental process	TO:0000421 - pollen fertility, TO:0000357 - growth and development trait	
26125	SPT5-1	OsSPT5-1	TRANSCRIPTION ELONGATION FACTOR SPT5-1	transcription elongation factor SPT5-1, SUPPRESSOR OF TY 5 homolog 1	TRANSCRIPTION ELONGATION FACTOR SPT5-1	osspt5-1, osspt5-1#7, osspt5-1#9, osspt5-1#12	6	GO:0080186: developmental vegetative growth. GO:2000280: regulation of root development.	 Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Vegetative organ - Root,  Reproductive organ - Pollination, fertilization, fertility	Os06g0208300	LOC_Os06g10620.1				GO:0009740 - gibberellic acid mediated signaling, GO:0003006 - reproductive developmental process, GO:0032784 - regulation of RNA elongation, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0009734 - auxin mediated signaling pathway, GO:0009736 - cytokinin mediated signaling, GO:0048831 - regulation of shoot development, GO:0048364 - root development	TO:0000357 - growth and development trait, TO:0000421 - pollen fertility, TO:0000654 - shoot development trait, TO:0000207 - plant height, TO:0000656 - root development trait	
26126	SPT5-2	OsSPT5-2	TRANSCRIPTION ELONGATION FACTOR SPT5-2	transcription elongation factor SPT5-2, SUPPRESSOR OF TY 5 homolog 2	TRANSCRIPTION ELONGATION FACTOR SPT5-2	osspt5-2, osspt5-2#1, osspt5-2#2	2	GO:0140673: transcription elongation-coupled chromatin remodeling.		Os02g0772000	LOC_Os02g53230.1				GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0005840 - ribosome, GO:0003735 - structural constituent of ribosome, GO:0006412 - translation, GO:0043229 - intracellular organelle, GO:0032784 - regulation of RNA elongation, GO:0006357 - regulation of transcription from RNA polymerase II promoter		
26127	GSW3	OsGSW3	GRAIN SIZE AND WEIGHT 3			GSW3Huaye3	3	TO:0000919: grain weight. PO:0030123: panicle inflorescence.	 Character as QTL - Plant growth activity,  Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os03g0627650	LOC_Os03g42920.1				GO:0009740 - gibberellic acid mediated signaling, GO:0005634 - nucleus, GO:0009739 - response to gibberellin stimulus, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0045926 - negative regulation of growth, GO:0051302 - regulation of cell division, GO:0001558 - regulation of cell growth	TO:0000590 - grain weight, TO:0000397 - grain size, TO:0000166 - gibberellic acid sensitivity, TO:0000207 - plant height, TO:0000357 - growth and development trait, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000396 - grain yield, TO:0002730 - grain shape	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009047 - stem 
26128	SRK1	OsSRK1	_			srk1-1, srk1-2	1	a lectin receptor-like kinase (LecRLK). TO:0020083: stem diameter.	 Vegetative organ - Culm	Os01g0204300	LOC_Os01g10710.1				GO:0009740 - gibberellic acid mediated signaling, GO:0080006 - internode patterning, GO:0051512 - positive regulation of unidimensional cell growth	TO:0000207 - plant height, TO:0000145 - internode length	PO:0009047 - stem , PO:0020142 - stem internode 
26129	BGL6	OsBGL6, BG6, OsBG6	BETA-GLUCANASE 6	beta-glucanase 6, beta-1, 3-glucanase 6	BETA-GLUCANASE 6	osbgls6	2		 Tolerance and resistance - Disease resistance,  Biochemical character,  Tolerance and resistance - Stress tolerance	Os02g0139300	LOC_Os02g04670.1				GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0052542 - callose deposition during defense response, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	
26130	BGL8	OsBGL8	BETA-GLUCANASE 8	beta-glucanase 8	BETA-GLUCANASE 8		3		 Biochemical character,  Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0792800	LOC_Os03g57880.3, LOC_Os03g57880.2, LOC_Os03g57880.1				GO:0009751 - response to salicylic acid stimulus, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0050832 - defense response to fungus, GO:0052542 - callose deposition during defense response, GO:0009611 - response to wounding	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance	
26131	BGL7	OsBGL7	BETA-GLUCANASE 7	beta-glucanase 7	BETA-GLUCANASE 7		3		 Biochemical character	Os03g0722500	LOC_Os03g51240.1, LOC_Os03g51240.2, LOC_Os03g51240.3				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
26132	BGL14	OsBGL14	BETA-GLUCANASE 14	beta-glucanase 14	BETA-GLUCANASE 14		4		 Biochemical character	Os04g0412300	LOC_Os04g33640.1, LOC_Os04g33640.2				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
26133	RBL1	OsRBL1	RESISTANCE TO BLAST 1	RESISTANCE TO BLAST1		RBL1delta12, rbl1delta12, rbl1	1	a CDP-DAG synthase (cytidine diphosphate diacylglycerol synthase). 	 Tolerance and resistance - Disease resistance,  Biochemical character	Os01g0758400	LOC_Os01g55360.3, LOC_Os01g55360.4, LOC_Os01g55360.2, LOC_Os01g55360.1				GO:0005789 - endoplasmic reticulum membrane, GO:0050832 - defense response to fungus, GO:0006952 - defense response, GO:0008654 - phospholipid biosynthetic process, GO:0016024 - CDP-diacylglycerol biosynthetic process, GO:0004605 - phosphatidate cytidylyltransferase activity, GO:0016020 - membrane	TO:0000063 - mimic response, TO:0000439 - fungal disease resistance, TO:0000112 - disease resistance, TO:0000074 - blast disease	PO:0020103 - flag leaf , PO:0025034 - leaf 
26134	PAH2	OsPAH2	PHOSPHATIDIC ACID PHOSPHOHYDROLASE 2	phosphatidic acid phosphohydrolase 2	PHOSPHATIDIC ACID PHOSPHOHYDROLASE 2		11		 Biochemical character	Os11g0615000	LOC_Os11g40080.1						
26135	PC1	OsPC1	PHOSPHATASE OF CATALASE 1 		PHOSPHATASE OF CATALASE 1 		10	a manganese (Mn2+)-dependent protein phosphatase. GO:2000296: negative regulation of hydrogen peroxide catabolic process. GO:1902551: regulation of catalase activity.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os10g0492800	LOC_Os10g35060.1				GO:0016787 - hydrolase activity, GO:0045927 - positive regulation of growth, GO:0006979 - response to oxidative stress, GO:0009651 - response to salt stress, GO:0004721 - phosphoprotein phosphatase activity	TO:0002657 - oxidative stress, TO:0000153 - relative yield, TO:0006001 - salt tolerance	
26136	BTB97	OsBTB97	BROAD-COMPLEX, TRAM TRACK, AND BRIC-ABRAC PROTEIN 97	"\"broad-complex, tram track, and bric-abrac protein 97\", BTB protein 97"	BROAD-COMPLEX, TRAM TRACK, AND BRIC-ABRAC PROTEIN 97		8	GO:0110165: cellular anatomical entity.	 Character as QTL - Yield and productivity,  Reproductive organ - Inflorescence,  Reproductive organ - Spikelet, flower, glume, awn,  Seed - Morphological traits - Grain shape	Os08g0523700	LOC_Os08g41220.1				GO:0010229 - inflorescence development, GO:0009909 - regulation of flower development, GO:0016567 - protein ubiquitination, GO:0009628 - response to abiotic stimulus	TO:0000396 - grain yield, TO:0000397 - grain size, TO:0000657 - spikelet anatomy and morphology trait, TO:0000621 - inflorescence development trait, TO:0000622 - flower development trait	PO:0001083 - inflorescence development stage , PO:0007615 - flower development stage 
26137	FBN7	OsFBN7	FIBRILLIN 7	fibrillin 7	FIBRILLIN 7		4	a PG-core (plastoglobule-core) fibrillin gene. GO:0080177: plastoglobule organization. GO:0097035: regulation of membrane lipid distribution. GO:1905038: regulation of membrane lipid metabolic process.	 Tolerance and resistance - Stress tolerance	Os04g0665800	LOC_Os04g57020.3, LOC_Os04g57020.2, LOC_Os04g57020.1				GO:0010287 - plastoglobule, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0009507 - chloroplast	TO:0000259 - heat tolerance, TO:0002657 - oxidative stress	
26138	KAS-IA	OsKAS Ia, KAS Ia, OsKAS-IA, OsKASI-2, KASI-2	BETA-KETOACYL-ACP SYNTHASE IA	beta-ketoacyl-ACP synthase Ia	BETA-KETOACYL-ACP SYNTHASE IA	oskasI-2, oskasI-2-1, oskasI-2-2	4	OsKASI-2 in Zhang et al. 2024. GO:0080177: plastoglobule organization. GO:0097035: regulation of membrane lipid distribution.GO:2000377: regulation of reactive oxygen species metabolic process. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0445700	LOC_Os04g36800.1, LOC_Os04g36800.2				GO:0009409 - response to cold, GO:0007009 - plasma membrane organization, GO:0009507 - chloroplast, GO:0006643 - membrane lipid metabolic process, GO:0006633 - fatty acid biosynthetic process, GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity, GO:0005739 - mitochondrion, GO:0009408 - response to heat, GO:0006979 - response to oxidative stress, GO:0009658 - chloroplast organization	TO:0000303 - cold tolerance, TO:0000019 - seedling height, TO:0000571 - shoot fresh weight, TO:0000604 - fat and essential oil content, TO:0000605 - hydrogen peroxide content, TO:0000495 - chlorophyll content, TO:0001027 - net photosynthetic rate, TO:0002657 - oxidative stress, TO:0000259 - heat tolerance, TO:0002662 - leaf rolling tolerance	PO:0009066 - anther , PO:0025034 - leaf 
26139	IPCS1	OsIPCS1	INOSITOLPHOSPHORYLCERAMIDE SYNTHASE 1	Inositolphosphorylceramide synthase 1	INOSITOLPHOSPHORYLCERAMIDE SYNTHASE 1	osipcs1	1	Q5N7A7.	 Vegetative organ - Culm,  Character as QTL - Plant growth activity,  Biochemical character	Os01g0850100	LOC_Os01g63060.1				GO:0045140 - inositol phosphoceramide synthase activity, GO:0006665 - sphingolipid metabolic process, GO:0001558 - regulation of cell growth, GO:0016020 - membrane, GO:0005802 - trans-Golgi network, GO:0047493 - ceramide cholinephosphotransferase activity, GO:0033188 - sphingomyelin synthase activity, GO:0046513 - ceramide biosynthetic process, GO:0006952 - defense response	TO:0000357 - growth and development trait, TO:0000145 - internode length, TO:0000207 - plant height, TO:0000604 - fat and essential oil content	
26140	IPCS2	OsIPCS2	INOSITOLPHOSPHORYLCERAMIDE SYNTHASE 2	Inositolphosphorylceramide synthase 2	INOSITOLPHOSPHORYLCERAMIDE SYNTHASE 2	osipcs2	5		 Biochemical character,  Character as QTL - Plant growth activity,  Vegetative organ - Culm	Os05g0452900	LOC_Os05g37910.2, LOC_Os05g37910.1				GO:0006665 - sphingolipid metabolic process, GO:0001558 - regulation of cell growth, GO:0006952 - defense response, GO:0046513 - ceramide biosynthetic process, GO:0033188 - sphingomyelin synthase activity, GO:0045140 - inositol phosphoceramide synthase activity, GO:0047493 - ceramide cholinephosphotransferase activity, GO:0005802 - trans-Golgi network, GO:0016020 - membrane	TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000604 - fat and essential oil content, TO:0000145 - internode length	
26141	POH1	OsPOH1	PARTNER OF HBP1	Partner of HBP1	PARTNER OF HBP1			a basic helix-loop-helix (bHLH) transcription factor. transcriptional regulators of Hd1 (Yin et al. 2023). 	 Other,  Reproductive organ - Heading date						GO:0010468 - regulation of gene expression, GO:0048579 - negative regulation of long-day photoperiodism, flowering, GO:0048577 - negative regulation of short-day photoperiodism, flowering, GO:0048573 - photoperiodism, flowering, GO:0009299 - mRNA transcription	TO:0002616 - flowering time, TO:0000137 - days to heading	
26142	PASPRO1	OsPASPRO1	POLLEN AND ANTHER SURFACE PATTERN REGULATOR OF O. SATIVA JAPONICA 1	Pollen and anther surface pattern regulator of O. sativa japonica 1	POLLEN AND ANTHER SURFACE PATTERN REGULATOR OF O. SATIVA JAPONICA 1	paspro1	8	ON980569. Q0J5F8. Mini zinc-finger gene (MIF). GO:0000976: transcription cis-regulatory region binding.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0438100					GO:0005634 - nucleus, GO:0009555 - pollen development, GO:0010584 - pollen exine formation, GO:0005737 - cytoplasm, GO:0048658 - tapetal layer development, GO:0048653 - anther development, GO:0005829 - cytosol, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046872 - metal ion binding, GO:0003700 - transcription factor activity	TO:0000455 - seed set percent, TO:0000437 - male sterility	PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0000002 - anther wall , PO:0025281 - pollen , PO:0020004 - anther wall exothecium 
26143	PASPRO2	OsPASPRO2	POLLEN AND ANTHER SURFACE PATTERN REGULATOR OF O. SATIVA JAPONICA 2	Pollen and anther surface pattern regulator of O. sativa japonica 2	POLLEN AND ANTHER SURFACE PATTERN REGULATOR OF O. SATIVA JAPONICA 2	paspro2	9	ON980570. Q6ER22. Mini zinc-finger gene (MIF). GO:0000976: transcription cis-regulatory region binding.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os09g0414500	LOC_Os09g24810.1				GO:0005737 - cytoplasm, GO:0009555 - pollen development, GO:0010584 - pollen exine formation, GO:0048658 - tapetal layer development, GO:0048653 - anther development, GO:0005829 - cytosol, GO:0006355 - regulation of transcription, DNA-dependent, GO:0046872 - metal ion binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus	TO:0000437 - male sterility, TO:0000455 - seed set percent	PO:0020004 - anther wall exothecium , PO:0001007 - pollen development stage , PO:0000002 - anther wall , PO:0025281 - pollen , PO:0001004 - anther development stage 
26144	SGS3B	OsSGS3b, SGS3b	SUPPRESSOR OF GENE SILENCING 3B	SUPPRESSOR OF GENE SILENCING 3b	SUPPRESSOR OF GENE SILENCING 3B	ossgs3b	12	GO:1900150: regulation of defense response to fungus. GO:1900425: negative regulation of defense response to bacterium.	 Tolerance and resistance - Disease resistance,  Character as QTL - Plant growth activity,  Tolerance and resistance - Stress tolerance	Os12g0197700	LOC_Os12g09590.1				GO:0009408 - response to heat, GO:0006400 - tRNA modification, GO:0009691 - cytokinin biosynthetic process, GO:0052381 - tRNA dimethylallyltransferase activity, GO:0009824 - adenylate dimethylallyltransferase activity, GO:0005739 - mitochondrion, GO:0050688 - regulation of defense response to virus, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0010494 - stress granule, GO:0070921 - regulation of production of siRNA involved in chromatin silencing by small RNA	TO:0000153 - relative yield, TO:0000605 - hydrogen peroxide content, TO:0000357 - growth and development trait, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000259 - heat tolerance	PO:0020141 - stem node , PO:0009047 - stem 
26145	PG3	OsPG3	POLYGALACTURONASE 3	polygalacturonase 3	POLYGALACTURONASE 3	ospg3, ospg3-2, ospg3-4	1	GO:1900376: regulation of secondary metabolite biosynthetic process.	 Biochemical character,  Character as QTL - Plant growth activity,  Vegetative organ - Culm	Os01g0637500	LOC_Os01g45060.1				GO:0004650 - polygalacturonase activity, GO:0005975 - carbohydrate metabolic process, GO:0032350 - regulation of hormone metabolic process, GO:0009664 - plant-type cell wall organization, GO:0009699 - phenylpropanoid biosynthetic process	TO:0000357 - growth and development trait, TO:0000207 - plant height	PO:0009047 - stem 
26147	PCR2	OsPCR2	PLANT CADMIUM RESISTANCE 2	plant cadmium resistance 2	PLANT CADMIUM RESISTANCE PROTEIN 2		2			Os02g0286933	LOC_Os02g18540.1				GO:0016020 - membrane		
26148	PCR3	OsPCR3	PLANT CADMIUM RESISTANCE 3	plant cadmium resistance 3	PLANT CADMIUM RESISTANCE PROTEIN 3		1			Os01g0267400	LOC_Os01g16210.1				GO:0016020 - membrane		
26149	DET2;2	OsDET2;2	DEETIOLATED 2;2	DEETIOLATED2;2			1		 Biochemical character	Os01g0851600	LOC_Os01g63260.1				GO:0047751 - cholestenone 5-alpha-reductase activity, GO:0003865 - 3-oxo-5-alpha-steroid 4-dehydrogenase activity, GO:0016020 - membrane, GO:0016132 - brassinosteroid biosynthetic process, GO:0016491 - oxidoreductase activity		PO:0001016 - L mature pollen stage 
26150	DET2;1	OsDET2;1	DEETIOLATED 2;1	DEETIOLATED2;1			11		 Biochemical character	Os11g0184100	LOC_Os11g08110.1, LOC_Os11g08110.2				GO:0016491 - oxidoreductase activity, GO:0016132 - brassinosteroid biosynthetic process, GO:0003865 - 3-oxo-5-alpha-steroid 4-dehydrogenase activity, GO:0016020 - membrane, GO:0047751 - cholestenone 5-alpha-reductase activity		
26151	FK1	OsFK1	FACKEL 1	FACKEL1			1		 Biochemical character	Os01g0354200	LOC_Os01g25189.6, LOC_Os01g25189.1, LOC_Os01g25189.2, LOC_Os01g25189.4, LOC_Os01g25189.5				GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors, GO:0016020 - membrane, GO:0016126 - sterol biosynthetic process, GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor		PO:0001007 - pollen development stage 
26152	FK2	OsFK2	FACKEL 2	FACKEL2			9		 Biochemical character	Os09g0565600	LOC_Os09g39220.1				GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors, GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, GO:0016020 - membrane, GO:0016126 - sterol biosynthetic process		PO:0001007 - pollen development stage 
26153	MHZ9	OsMHZ9	MAOHUZI 9	maohuzi9		mhz9	1	a glycine- tyrosine-phenylalanine (GYF) domain protein. TO:0000919: grain weight.	 Vegetative organ - Culm,  Tolerance and resistance - Stress tolerance,  Vegetative organ - Root,  Seed - Morphological traits - Grain shape	Os01g0924600	LOC_Os01g69990.1				GO:0000932 - cytoplasmic mRNA processing body, GO:0006950 - response to stress, GO:0017148 - negative regulation of translation, GO:0005737 - cytoplasm, GO:0010104 - regulation of ethylene mediated signaling pathway, GO:0009723 - response to ethylene stimulus	TO:0000227 - root length, TO:0000516 - relative root length, TO:0000168 - abiotic stress trait, TO:0000145 - internode length, TO:0000173 - ethylene sensitivity, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000734 - grain length, TO:0000399 - grain thickness	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0020141 - stem node , PO:0009066 - anther , PO:0009030 - carpel , PO:0020033 - coleoptile 
26154	DMS1	Dms1, OsRIP1, RIP1	DOMINANT MALE STERILITY 1	ribosome-inactivating protein 1, dominant male sterility 1	RIBOSOME-INACTIVATING PROTEIN 1		8	Anther-specific expression of OsRIP1 causes dominant male sterility and root- or leaf-specific expression of OsRIP1 resulted in lethal plants (Lei et al. 2023). GO:0090729: toxin activity. TO:1000022: anther morphology trait.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os08g0132300	LOC_Os08g03820.1				GO:0030598 - rRNA N-glycosylase activity, GO:0000154 - rRNA modification, GO:0045007 - depurination, GO:0060545 - positive regulation of necroptosis, GO:0017148 - negative regulation of translation, GO:0006952 - defense response	TO:0000218 - pollen abortion type, TO:0000437 - male sterility, TO:0000245 - pollen free	PO:0009049 - inflorescence 
26155	KCS5	OsKCS5	3-KETOACYL-COA SYNTHASE 5	3-Ketoacyl-CoA synthase 5	3-KETOACYL-COA SYNTHASE 5		3	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0162650	LOC_Os03g06700.1				GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0046686 - response to cadmium ion, GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane		PO:0009010 - seed , PO:0009047 - stem 
26156	KCS9	OsKCS9	3-KETOACYL-COA SYNTHASE 9	3-Ketoacyl-CoA synthase 9	3-KETOACYL-COA SYNTHASE 9		3	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os03g0245700	LOC_Os03g14170.1				GO:0046686 - response to cadmium ion, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane, GO:0006633 - fatty acid biosynthetic process		PO:0009010 - seed , PO:0009005 - root 
26157	KCS10	OsKCS10	3-KETOACYL-COA SYNTHASE 10	3-Ketoacyl-CoA synthase 10	3-KETOACYL-COA SYNTHASE 10		3	GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0382100	LOC_Os03g26530.1				GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0046686 - response to cadmium ion		PO:0009047 - stem , PO:0025034 - leaf 
26158	KCS11	OsKCS11	3-KETOACYL-COA SYNTHASE 11	3-Ketoacyl-CoA synthase 11	3-KETOACYL-COA SYNTHASE 11		3	GO:1990170: stress response to cadmium ion. PO:0030123: panicle inflorescence.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0383600	LOC_Os03g26620.1				GO:0006633 - fatty acid biosynthetic process, GO:0046686 - response to cadmium ion, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0016020 - membrane		PO:0009049 - inflorescence 
26159	KCS18	OsKCS18	3-KETOACYL-COA SYNTHASE 18	3-Ketoacyl-CoA synthase 18	3-KETOACYL-COA SYNTHASE 18		9	GO:1990170: stress response to cadmium ion. 	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os09g0360500	LOC_Os09g19650.1				GO:0046686 - response to cadmium ion, GO:0016020 - membrane, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006633 - fatty acid biosynthetic process		PO:0025034 - leaf 
26160	KCS19	OsKCS19	3-KETOACYL-COA SYNTHASE 19	3-Ketoacyl-CoA synthase 19	3-KETOACYL-COA SYNTHASE 19		9	GO:1990170: stress response to cadmium ion. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os09g0521100	LOC_Os09g34930.1				GO:0006633 - fatty acid biosynthetic process, GO:0009922 - fatty acid elongase activity, GO:0016020 - membrane, GO:0046686 - response to cadmium ion		PO:0025034 - leaf 
26161	KCS22	OsKCS22	3-KETOACYL-COA SYNTHASE 22	3-Ketoacyl-CoA synthase 22	3-KETOACYL-COA SYNTHASE 22		11	GO:1990170: stress response to cadmium ion. 	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os11g0591200	LOC_Os11g37900.1				GO:0009922 - fatty acid elongase activity, GO:0046686 - response to cadmium ion, GO:0006633 - fatty acid biosynthetic process, GO:0016020 - membrane		PO:0009005 - root , PO:0009010 - seed 
26162	RBLS1	OsRBLS1	RESISTANCE TO BACTERIAL LEAF STREAK 1	resistance to bacterial leaf streak 1			8	GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance	Os08g0202400	LOC_Os08g10260.1				GO:0043531 - ADP binding, GO:0006952 - defense response, GO:0051707 - response to other organism, GO:0042742 - defense response to bacterium	TO:0000203 - bacterial leaf streak disease resistance	
26163	RBLS3	OsRBLS3	RESISTANCE TO BACTERIAL LEAF STREAK 3	resistance to bacterial leaf streak 3			3	CT835165.	 Tolerance and resistance - Disease resistance	Os03g0674900	LOC_Os03g47160.1				GO:0042742 - defense response to bacterium	TO:0000203 - bacterial leaf streak disease resistance	
26164	RBLS4	OsRBLS4	RESISTANCE TO BACTERIAL LEAF STREAK 4	resistance to bacterial leaf streak 4			10	a precursor of receptor-like protein kinase 2.	 Tolerance and resistance - Disease resistance	Os10g0467900	LOC_Os10g32990.1				GO:0004672 - protein kinase activity, GO:0042742 - defense response to bacterium, GO:0016020 - membrane, GO:0005524 - ATP binding	TO:0000203 - bacterial leaf streak disease resistance	
26165	RPP13-L1	OsRPP13-L1, OsRPP13-L, RPP13-L	RPP13-LIKE 1	RPP13-like 1	RPP13-LIKE 1		1	GO:0098542: defense response to other organism. GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway.	 Tolerance and resistance	Os01g0781600					GO:0002758 - innate immune response-activating signal transduction, GO:0006952 - defense response	TO:0000179 - biotic stress trait	
26166	PIK2L	Pik-2-L, OsPik-2-L, OsPIK2L	PIK2-LIKE	PIK-2-like			11	GO:0098542: defense response to other organism. GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway.	 Tolerance and resistance	Os11g0598300	LOC_Os11g38520.1				GO:0002758 - innate immune response-activating signal transduction, GO:0051707 - response to other organism, GO:0006952 - defense response	TO:0000179 - biotic stress trait	
26167	RGA5L1	OsRGA5-L1, RGA5-L1, OsRGA5L1	RGA5-LIKE 1	RGA5-like 1, R-gene analog 5-like 1	RGA5-LIKE 1		11	GO:0098542: defense response to other organism. GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway.	 Tolerance and resistance	Os11g0685600	LOC_Os11g45840.1				GO:0006952 - defense response, GO:0050896 - response to stimulus, GO:0043565 - sequence-specific DNA binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus, GO:0002758 - innate immune response-activating signal transduction	TO:0000179 - biotic stress trait	
26168	WAK3L1	OsWAK3-L1, WAK3-L1, OsWAK3L1	WAK3-LIKE 1	WAK3-like 1, WALL-ASSOCIATED KINASE 3-like 1	WAK3-LIKE 1		11	GO:0098542: defense response to other organism. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.  GO:0038187: pattern recognition receptor activity.	 Tolerance and resistance	Os11g0690332					GO:0030247 - polysaccharide binding, GO:0006952 - defense response	TO:0000179 - biotic stress trait	
26169	XA21L	Xa21-L, OsXa21-L, OsXa21L	XA21-LIKE	OsXa21-like			11	GO:0098542: defense response to other organism. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.  GO:0038187: pattern recognition receptor activity.	 Biochemical character,  Tolerance and resistance	Os11g0692500	LOC_Os11g47030.1				GO:0016020 - membrane, GO:0016310 - phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006952 - defense response	TO:0000179 - biotic stress trait	
26170	RLP7	OsRLP7	LRR RECEPTOR-LIKE PROTEIN 7	LRR receptor-like protein 7, Leucine rich-repeat receptor-like protein 7	LRR RECEPTOR-LIKE PROTEIN 7		12	GO:0098542: defense response to other organism. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.  GO:0038187: pattern recognition receptor activity.	 Tolerance and resistance	Os12g0222900	LOC_Os12g12130.1				GO:0006952 - defense response, GO:0005886 - plasma membrane	TO:0000179 - biotic stress trait	
26171	RLP23	OsRLP23	LRR RECEPTOR-LIKE PROTEIN 23	LRR receptor-like protein 23, Leucine rich-repeat receptor-like protein 23	LRR RECEPTOR-LIKE PROTEIN 23		12	GO:0098542: defense response to other organism. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.  GO:0038187: pattern recognition receptor activity.	 Tolerance and resistance	Os12g0221700	LOC_Os12g12010.1				GO:0006952 - defense response, GO:0005886 - plasma membrane	TO:0000179 - biotic stress trait	
26172	LECRKIX1	OsLecRK IX.1, OsLecRKIX.1, LecRKIX.1	LECTIN RECEPTOR KINASE IX1	Lectin Receptor Kinase IX.1	LECTIN RECEPTOR KINASE IX1		8	GO:0098542: defense response to other organism. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.  GO:0038187: pattern recognition receptor activity.	 Biochemical character,  Tolerance and resistance	Os08g0124100	LOC_Os08g03002.1				GO:0016020 - membrane, GO:0006952 - defense response, GO:0005886 - plasma membrane, GO:0004713 - protein tyrosine kinase activity, GO:0030246 - carbohydrate binding, GO:0005524 - ATP binding	TO:0000179 - biotic stress trait	
26173	WAK3L2	OsWAK3-L2, WAK3-L2, OsWAK3L2	WAK3-LIKE 2	WAK3-like 2, WALL-ASSOCIATED KINASE 3-like 2	WAK3-LIKE 2		4	GO:0098542: defense response to other organism. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.  GO:0038187: pattern recognition receptor activity.	 Tolerance and resistance	Os04g0367000	LOC_Os04g29810.1				GO:0006952 - defense response, GO:0030247 - polysaccharide binding	TO:0000179 - biotic stress trait	
26174	CRK44L	OsCRK44-L, CRK44-L, OsCRK44L	CRK44-LIKE	OsCRK44-like, Cysteine-rich Receptor-like Protein Kinase 44-like	CRK44-LIKE		4	GO:0098542: defense response to other organism. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway.  GO:0038187: pattern recognition receptor activity.	 Tolerance and resistance	Os04g0369300/Os04g0369600	LOC_Os04g30060.1, LOC_Os04g30110.1				GO:0004672 - protein kinase activity, GO:0007166 - cell surface receptor linked signal transduction, GO:0006952 - defense response, GO:0030247 - polysaccharide binding, GO:0016020 - membrane, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0016310 - phosphorylation, GO:0005886 - plasma membrane	TO:0000179 - biotic stress trait	
26175	PIK5L	Pik-5-L, OsPik-5-L, OsPIK5L	PIK5-LIKE	PIK-5-like			11	GO:0098542: defense response to other organism. GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway.	 Tolerance and resistance	Os11g0689000	LOC_Os11g46200.1, LOC_Os11g46220.1				GO:0006952 - defense response, GO:0051707 - response to other organism, GO:0002758 - innate immune response-activating signal transduction	TO:0000179 - biotic stress trait	
26176	CRPG33	OsCRPG33	COLLAR REGION-PREFERENTIAL GENE 33	collar region-preferential gene 33	COLLAR REGION-PREFERENTIAL PROTEIN 33		9		 Biochemical character	Os09g0329200	LOC_Os09g16030.1				GO:0035251 - UDP-glucosyltransferase activity		PO:0006012 - leaf collar 
26177	CRPG70	OsCRPG70	COLLAR REGION-PREFERENTIAL GENE 70	collar region-preferential gene 70	COLLAR REGION-PREFERENTIAL PROTEIN 70		10		 Biochemical character	Os10g0133400	LOC_Os10g04400.1				GO:0050734 - hydroxycinnamoyltransferase activity, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups		PO:0006012 - leaf collar 
26178	CRPG160	OsCRPG160	COLLAR REGION-PREFERENTIAL GENE 160	collar region-preferential gene 160	COLLAR REGION-PREFERENTIAL PROTEIN 160		3				LOC_Os03g41480.1						PO:0006012 - leaf collar 
26179	CRPG348	OsCRPG348	COLLAR REGION-PREFERENTIAL GENE 348	collar region-preferential gene 348	COLLAR REGION-PREFERENTIAL PROTEIN 348		4		 Biochemical character	Os04g0226800	LOC_Os04g15630.1				GO:0005524 - ATP binding, GO:0016020 - membrane, GO:0004672 - protein kinase activity		PO:0006012 - leaf collar 
26180	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			6	CT834222 (indica).		Os06g0719900	LOC_Os06g50510.1				GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
26181	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			2			Os02g0102800	LOC_Os02g01270.1				GO:0008289 - lipid binding, GO:0005634 - nucleus		
26182	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			10			Os10g0455900	LOC_Os10g31770.1				GO:0005634 - nucleus		
26183	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			2			Os02g0124800	LOC_Os02g03230.1						
26184	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			2			Os02g0468400	LOC_Os02g26860.1				GO:0008289 - lipid binding, GO:0016020 - membrane, GO:0005634 - nucleus		
26185	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			4			Os04g0119500	LOC_Os04g02910.3, LOC_Os04g02910.2, LOC_Os04g02910.1				GO:0005634 - nucleus, GO:0008289 - lipid binding		
26186	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			6			Os06g0720500	LOC_Os06g50560.1				GO:0005634 - nucleus, GO:0008289 - lipid binding, GO:0003700 - transcription factor activity		
26187	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			6			Os06g0722650	LOC_Os06g50724.1				GO:0008289 - lipid binding, GO:0003700 - transcription factor activity, GO:0005634 - nucleus		
26188	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			7			Os07g0185200	LOC_Os07g08760.1, LOC_Os07g08760.2				GO:0005634 - nucleus, GO:0008289 - lipid binding, GO:0016020 - membrane		
26189	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			7				LOC_Os07g47130.1						
26190	_		_	START domain protein, Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein			11			Os11g0245500	LOC_Os11g14070.1				GO:0008289 - lipid binding, GO:0005634 - nucleus		
26191	ALKBH1A	OsALKBH1A, OsALKBH9B, ALKBH9B	ALKB HOMOLOG 1A	AlkB homolog 1A, AlkB homolog 9B	ALKB HOMOLOG 1A		11	a rice homolog of Escherichia coli AlkB.  Alkylation B family protein. N6-methyladenosine (m6A) methylation regulatory gene, eraser enzyme (RNA demethylase). OsALKBH9B in Hasan et al. 2024. GO:0035516: oxidative DNA demethylase activity. GO:0035515: oxidative RNA demethylase activity. GO:0035513: oxidative RNA demethylation. GO:0035552: oxidative single-stranded DNA demethylation.	 Biochemical character	Os11g0488500	LOC_Os11g29690.1				GO:0005634 - nucleus, GO:0008198 - ferrous iron binding, GO:0006281 - DNA repair, GO:0051213 - dioxygenase activity, GO:0005737 - cytoplasm		
26192	ALKBH2	OsALKBH2	ALKB HOMOLOG 2	AlkB homolog 2	ALKB HOMOLOG 2		6	a rice homolog of Escherichia coli AlkB.		Os06g0286310	LOC_Os06g17830.1				GO:0006281 - DNA repair		
26193	ALKBH5	OsALKBH5, OsALKBH9A, ALKBH9A, OsALKBH9, ALKBH9	ALKB HOMOLOG 5	AlkB homolog 5, AlkB homolog 9A, AlkB homologue 9	ALKB HOMOLOG 5	Osalkbh9-1, Osalkbh9-2	6	a rice homolog of Escherichia coli AlkB. OsALKBH9A in Hasan et al.  2024.  Alkylation B family protein. N6-methyladenosine (m6A) methylation regulatory gene, eraser enzyme (RNA demethylase). OsALKBH9 in Tang et a. 2024. GO:1990931: mRNA N6-methyladenosine dioxygenase activity. GO:0035513: oxidative RNA demethylation.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os06g0138200	LOC_Os06g04660.2, LOC_Os06g04660.1				GO:0032451 - demethylase activity, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009409 - response to cold, GO:0006281 - DNA repair, GO:0009414 - response to water deprivation, GO:0003729 - mRNA binding, GO:0006402 - mRNA catabolic process, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0043067 - regulation of programmed cell death, GO:0010584 - pollen exine formation, GO:0009555 - pollen development, GO:0009556 - microsporogenesis, GO:0048658 - tapetal layer development, GO:0080110 - sporopollenin biosynthetic process	TO:0000175 - bacterial blight disease resistance, TO:0000421 - pollen fertility, TO:0000053 - pollen sterility, TO:0000455 - seed set percent, TO:0000214 - anther shape, TO:0000187 - anther color, TO:0000437 - male sterility, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000074 - blast disease	PO:0001007 - pollen development stage , PO:0009066 - anther 
26194	ALKBH8A	OsALKBH8A	ALKB HOMOLOG 8A	AlkB homolog 8A	ALKB HOMOLOG 8A		6	a rice homolog of Escherichia coli AlkB.		Os04g0602700	LOC_Os04g51360.1				GO:0070988 - demethylation, GO:0003723 - RNA binding		
26195	ALKBH8B	OsALKBH8B	ALKB HOMOLOG 8B	AlkB homolog 8B	ALKB HOMOLOG 8B		11	a rice homolog of Escherichia coli AlkB.		Os11g0657200	LOC_Os11g43610.1				GO:0005759 - mitochondrial matrix, GO:0006974 - response to DNA damage stimulus, GO:0006631 - fatty acid metabolic process		
26196	ALKBH10	OsALKBH10, OsALKBH9C, ALKBH9C	ALKB HOMOLOG 10	AlkB homolog 10, AlkB homolog 9C	ALKB HOMOLOG 10		5	a rice homolog of Escherichia coli AlkB. Alkylation B family protein. N6-methyladenosine (m6A) methylation regulatory gene, eraser enzyme (RNA demethylase). OsALKBH9C in Hasan et al. 2024. PO:0030123: panicle inflorescence.		Os05g0401500	LOC_Os05g33310.1						PO:0009049 - inflorescence , PO:0009005 - root 
26197	POLQ	PolQ, OsPolQ	DNA POLYMERASE THETA	DNA polymerase theta	DNA POLYMERASE THETA	polQ#5, polQ#14, polQ#20	12	LC589280. a non-homologous end-joining (NHEJ) DNA repair protein. GO:1990067: intrachromosomal DNA recombination. GO:2000011: regulation of adaxial/abaxial pattern formation. GO:1902749: regulation of cell cycle G2/M phase transition.	 Character as QTL - Plant growth activity	Os12g0291000	LOC_Os12g19370.1				GO:0006261 - DNA-dependent DNA replication, GO:0051301 - cell division, GO:0003887 - DNA-directed DNA polymerase activity, GO:0003677 - DNA binding, GO:0006303 - double-strand break repair via nonhomologous end joining, GO:0005524 - ATP binding, GO:0010468 - regulation of gene expression, GO:0009640 - photomorphogenesis, GO:0009933 - meristem structural organization, GO:0006302 - double-strand break repair	TO:0000357 - growth and development trait	
26198	CYP71T1	OsCYP71T1	CYTOCHROME P450 71T1	Cytochrome P450 71T1	CYTOCHROME P450 71T1		1	BGIOSGA003049.	 Biochemical character	Os01g0227400	LOC_Os01g12740.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
26199	CYP71T2	OsCYP71T2	CYTOCHROME P450 71T2	Cytochrome P450 71T2	CYTOCHROME P450 71T2		1	BGIOSGA003050.	 Biochemical character	Os01g0227500      	LOC_Os01g12750.1				GO:0016020 - membrane, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26200	CYP71K1	OsCYP71K1	CYTOCHROME P450 71K1	Cytochrome P450 71K1	CYTOCHROME P450 71K1		1	BGIOSGA001610.	 Biochemical character	Os01g0377000      	LOC_Os01g27890.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26201	CYP71K3	OsCYP71K3	CYTOCHROME P450 71K3	Cytochrome P450 71K3	CYTOCHROME P450 71K3		2	BGIOSGA007694.	 Biochemical character	Os02g0186800      	LOC_Os02g09390.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26202	CYP71X1	OsCYP71X1	CYTOCHROME P450 71X1	Cytochrome P450 71X1	CYTOCHROME P450 71X1		2	BGIOSGA007002.	 Biochemical character	Os02g0184700      	LOC_Os02g09200.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016020 - membrane		
26203	CYP71K2	OsCYP71K2	CYTOCHROME P450 71K2	Cytochrome P450 71K2	CYTOCHROME P450 71K2		2	BGIOSGA007683.	 Biochemical character						GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26204	CYP71X2	OsCYP71X2	CYTOCHROME P450 71X2	Cytochrome P450 71X2	CYTOCHROME P450 71X2		2	BGIOSGA007686.	 Biochemical character	Os02g0185300	LOC_Os02g09250.1				GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding		
26205	CYP71K4	OsCYP71K4	CYTOCHROME P450 71K4	Cytochrome P450 71K4	CYTOCHROME P450 71K4		2	BGIOSGA007696.	 Biochemical character	Os02g0187000      	LOC_Os02g09410.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
26206	CYP71V1	OsCYP71V1	CYTOCHROME P450 71V1	Cytochrome P450 71V1	CYTOCHROME P450 71V1		2	BGIOSGA007791.	 Biochemical character	Os02g0217300      	LOC_Os02g12540.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
26207	CYP71V2	OsCYP71V2	CYTOCHROME P450 71V2	Cytochrome P450 71V2	CYTOCHROME P450 71V2		2	BGIOSGA007792.	 Biochemical character	Os02g0217400      	LOC_Os02g12550.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26208	CYP71U4	OsCYP71U4	CYTOCHROME P450 71U4	Cytochrome P450 71U4	CYTOCHROME P450 71U4		2	BGIOSGA007962.	 Biochemical character	Os02g0278400      	LOC_Os02g17760.1				GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
26209	CYP71AB6	OsCYP71AB6	CYTOCHROME P450 71AB6	Cytochrome P450 71AB6	CYTOCHROME P450 71AB6		2	BGIOSGA008255.	 Biochemical character						GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26210	CYP71U5	OsCYP71U5	CYTOCHROME P450 71U5	Cytochrome P450 71U5	CYTOCHROME P450 71U5		2	BGIOSGA008265.	 Biochemical character	Os02g0503700	LOC_Os02g30080.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26211	CYP71U6	OsCYP71U6	CYTOCHROME P450 71U6	Cytochrome P450 71U6	CYTOCHROME P450 71U6		2	BGIOSGA008266.	 Biochemical character	Os02g0503800	LOC_Os02g30090.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
26212	CYP71T6	OsCYP71T6	CYTOCHROME P450 71T6	Cytochrome P450 71T6	CYTOCHROME P450 71T6		3	BGIOSGA010447.	 Biochemical character						GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
26213	CYP71AB9	OsCYP71AB9	CYTOCHROME P450 71AB9	Cytochrome P450 71AB9	CYTOCHROME P450 71AB9		3	BGIOSGA011111.	 Biochemical character	Os03g0248300	LOC_Os03g14420.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
26214	CYP71P4	OsCYP71P4	CYTOCHROME P450 71P4	Cytochrome P450 71P4	CYTOCHROME P450 71P4		3	BGIOSGA011508.	 Biochemical character	Os03g0134500	LOC_Os03g04190.1				GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
26215	CYP71W3	OsCYP71W3	CYTOCHROME P450 71W3	Cytochrome P450 71W3	CYTOCHROME P450 71W3		3	BGIOSGA013059.	 Biochemical character	Os03g0594100	LOC_Os03g39690.1				GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
26216	CYP71W4	OsCYP71W4	CYTOCHROME P450 71W4	Cytochrome P450 71W4	CYTOCHROME P450 71W4		3	BGIOSGA013063.	 Biochemical character	Os03g0594900	LOC_Os03g39760.1				GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26217	CYP71V3	OsCYP71V3	CYTOCHROME P450 71V3	Cytochrome P450 71V3	CYTOCHROME P450 71V3		3	BGIOSGA013536.	 Biochemical character	Os03g0741500	LOC_Os03g53060.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
26218	CYP71U10	OsCYP71U10	CYTOCHROME P450 71U10	Cytochrome P450 71U10	CYTOCHROME P450 71U10		3	BGIOSGA013606.	 Biochemical character	Os03g0760500	LOC_Os03g55260.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
26219	CYP71E3	OsCYP71E3	CYTOCHROME P450 71E3	Cytochrome P450 71E3	CYTOCHROME P450 71E3		3	BGIOSGA013948. CT835106.	 Biochemical character	Os03g0850200	LOC_Os03g63310.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane, GO:0004497 - monooxygenase activity		
26220	CYP71S2	OsCYP71S2	CYTOCHROME P450 71S2	Cytochrome P450 71S2	CYTOCHROME P450 71S2		4	BGIOSGA014867.	 Biochemical character	Os04g0480700	LOC_Os04g40470.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
26221	CYP71S3	OsCYP71S3	CYTOCHROME P450 71S3	Cytochrome P450 71S3	CYTOCHROME P450 71S3		4	BGIOSGA014866. CT834002.	 Biochemical character	Os04g0480600/Os04g0480650	LOC_Os04g40460.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26222	CYP71Z8	OsCYP71Z8	CYTOCHROME P450 71Z8	Cytochrome P450 71Z8	CYTOCHROME P450 71Z8		4	BGIOSGA015504. Os04g0180400 ortholog.	 Biochemical character						GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding		
26223	CYP71Z9	OsCYP71Z9	CYTOCHROME P450 71Z9	Cytochrome P450 71Z9	CYTOCHROME P450 71Z9		4	BGIOSGA015981. Os04g0178400 ortholog. GO:0036209: 9beta-pimara-7,15-diene oxidase activity.	 Biochemical character						GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0071395 - cellular response to jasmonic acid stimulus, GO:0016020 - membrane, GO:0016101 - diterpenoid metabolic process		
26224	CYP71P6	OsCYP71P6	CYTOCHROME P450 71P6	Cytochrome P450 71P6	CYTOCHROME P450 71P6	OsCYP71P6-1, OsCYP71P6-4	5	BGIOSGA018523 (Indica Chromosome 5: 8,791,390-8,793,045 reverse strand). a homolog of CYP71A1 (LOC_Os12g16720, Os12g0268000). Os12g0268000 ortholog.	 Reproductive organ - Spikelet, flower, glume, awn,  Character as QTL - Yield and productivity,  Reproductive organ - panicle,  Biochemical character						GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity	TO:0000014 - panicle weight, TO:0000456 - spikelet number, TO:0000447 - filled grain number, TO:0000449 - grain yield per plant, TO:0000040 - panicle length	
26225	CYP71AD	OsCYP71AD	CYTOCHROME P450 71AD	Cytochrome P450 71AD	CYTOCHROME P450 71AD		5	BGIOSGA018026.	 Biochemical character	Os05g0424300	LOC_Os05g35010.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity		
26226	CYP71AF2	OsCYP71AF2	CYTOCHROME P450 71AF2	Cytochrome P450 71AF2	CYTOCHROME P450 71AF2		5	BGIOSGA019698.	 Biochemical character	Os05g0361000	LOC_Os05g29750.1				GO:0016020 - membrane, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
26227	CYP71R1	OsCYP71R1	CYTOCHROME P450 71R1	Cytochrome P450 71R1	CYTOCHROME P450 71R1		5	BGIOSGA020185.	 Biochemical character	Os05g0515200	LOC_Os05g43910.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding		
26228	CYP71AF1	OsCYP71AF1	CYTOCHROME P450 71AF1	Cytochrome P450 71AF1	CYTOCHROME P450 71AF1		6	BGIOSGA020805.	 Biochemical character	Os06g0642600	LOC_Os06g43520.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26229	CYP71C2	OsCYP71C2	CYTOCHROME P450 71C2	Cytochrome P450 71C2	CYTOCHROME P450 71C2		6	BGIOSGA022809.	 Biochemical character	Os06g0325900	LOC_Os06g22020.1				GO:0005506 - iron ion binding, GO:0016020 - membrane, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26230	CYP71Y1	OsCYP71Y1	CYTOCHROME P450 71Y1	Cytochrome P450 71Y1	CYTOCHROME P450 71Y1		6	BGIOSGA023341.	 Biochemical character	Os06g0640800	LOC_Os06g43370.1				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26231	CYP71Y2	OsCYP71Y2	CYTOCHROME P450 71Y2	Cytochrome P450 71Y2	CYTOCHROME P450 71Y2		6	BGIOSGA023345.	 Biochemical character						GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26232	CYP71Y3	OsCYP71Y3	CYTOCHROME P450 71Y3	Cytochrome P450 71Y3	CYTOCHROME P450 71Y3		6	BGIOSGA023346.	 Biochemical character	Os06g0641500	LOC_Os06g43410.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding		
26233	CYP71K6	OsCYP71K6	CYTOCHROME P450 71K6	Cytochrome P450 71K6	CYTOCHROME P450 71K6		6	BGIOSGA023350.	 Biochemical character	Os06g0642300	LOC_Os06g43490.1				GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0020037 - heme binding		
26234	CYP71AC2	OsCYP71AC2	CYTOCHROME P450 71AC2	Cytochrome P450 71AC2	CYTOCHROME P450 71AC2		6	BGIOSGA023351.	 Biochemical character	Os06g0642500	LOC_Os06g43510.1, LOC_Os06g43510.3, LOC_Os06g43510.2				GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane, GO:0020037 - heme binding		
26235	CYP71Q1	OsCYP71Q1	CYTOCHROME P450 71Q1	Cytochrome P450 71Q1	CYTOCHROME P450 71Q1		7	BGIOSGA024456. CT836150.	 Biochemical character	Os07g0293000	LOC_Os07g19210.1				GO:0004497 - monooxygenase activity, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane		
26236	CYP71AB13	OsCYP71AB13	CYTOCHROME P450 71AB13	Cytochrome P450 71AB13	CYTOCHROME P450 71AB13		7	BGIOSGA027437.	 Biochemical character	 Os08g0226166/Os08g0226300	LOC_Os08g12990.1				GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26237	CYP71C5	OsCYP71C5	CYTOCHROME P450 71C5	Cytochrome P450 71C5	CYTOCHROME P450 71C5		8	BGIOSGA027790.	 Biochemical character	Os08g0105800	LOC_Os08g01490.1				GO:0004497 - monooxygenase activity, GO:0016020 - membrane, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26238	CYP71C6	OsCYP71C6	CYTOCHROME P450 71C6	Cytochrome P450 71C6	CYTOCHROME P450 71C6		8	BGIOSGA027840.	 Biochemical character	Os08g0106000	LOC_Os08g01510.1				GO:0004497 - monooxygenase activity, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane		
26239	CYP71AB12	OsCYP71AB12	CYTOCHROME P450 71AB12	Cytochrome P450 71AB12	CYTOCHROME P450 71AB12		8	BGIOSGA027933. Q7EZR4. GO:0052722: fatty acid in-chain hydroxylase activity.	 Biochemical character	Os08g0131000/Os08g0131100	LOC_Os08g03676.1, LOC_Os08g03682.1				GO:0003723 - RNA binding, GO:0048653 - anther development, GO:0016020 - membrane, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0004497 - monooxygenase activity, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0009451 - RNA modification, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen		
26240	CYP71Z1	OsCYP71Z1	CYTOCHROME P450 71Z1	Cytochrome P450 71Z1	CYTOCHROME P450 71Z1		10	BGIOSGA031844.	 Biochemical character	Os10g0439666/Os10g0439700	LOC_Os10g30380.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0020037 - heme binding, GO:0005506 - iron ion binding		
26241	CYP71AB3	OsCYP71AB3	CYTOCHROME P450 71AB3	Cytochrome P450 71AB3	CYTOCHROME P450 71AB3		10	BGIOSGA032584.	 Biochemical character	Os10g0167200/Os10g0167250	LOC_Os10g08540.1				GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26242	CYP71AB4	OsCYP71AB4	CYTOCHROME P450 71AB4	Cytochrome P450 71AB4	CYTOCHROME P450 71AB4		10	BGIOSGA032599.	 Biochemical character	Os10g0172100	LOC_Os10g09160.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0020037 - heme binding		
26243	CYP71AB5	OsCYP71AB5	CYTOCHROME P450 71AB5	Cytochrome P450 71AB5	CYTOCHROME P450 71AB5		10	BGIOSGA032634.	 Biochemical character	Os10g0186300	LOC_Os10g10720.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0004497 - monooxygenase activity, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen		
26244	CYP71P1	OsCYP71P1	CYTOCHROME P450 71P1	Cytochrome P450 71P1	CYTOCHROME P450 71P1		10	BGIOSGA032653.	 Biochemical character	Os10g0196100	LOC_Os10g12080.1				GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, GO:0016020 - membrane, GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity		
26245	CYP71U2	OsCYP71U2	CYTOCHROME P450 71U2	Cytochrome P450 71U2	CYTOCHROME P450 71U2		12	BGIOSGA035935.	 Biochemical character	Os12g0582000	LOC_Os12g39300.1, LOC_Os12g39240.1				GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0005506 - iron ion binding, GO:0020037 - heme binding, GO:0016020 - membrane		
26246	CYP71U3	OsCYP71U3	CYTOCHROME P450 71U3	Cytochrome P450 71U3	CYTOCHROME P450 71U3		12	BGIOSGA035934.	 Biochemical character	Os12g0582666					GO:0020037 - heme binding, GO:0016020 - membrane, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen		
26247	CYP71V4	OsCYP71V4	CYTOCHROME P450 71V4	Cytochrome P450 71V4	CYTOCHROME P450 71V4			BGIOSGA037944 (Supscaffold AAAA02035682.1: 5,479-7,227 forward strand.). Os12g0640200 ortholog.	 Biochemical character								
26248	CYP71W9	OsCYP71W9	CYTOCHROME P450 71W9	Cytochrome P450 71W9	CYTOCHROME P450 71W9			BGIOSGA038041 (Supscaffold AAAA02036020.1: 14,706-17,551 forward strand.). Os09g0263933 ortholog.	 Biochemical character								
26249	CYP71U12	OsCYP71U12	CYTOCHROME P450 71U12	Cytochrome P450 71U12	CYTOCHROME P450 71U12			BGIOSGA038175 (Supscaffold AAAA02036741.1: 10,396-12,075 reverse strand).	 Biochemical character								
26250	CYP71AB14	OsCYP71AB14	CYTOCHROME P450 71AB14	Cytochrome P450 71AB14	CYTOCHROME P450 71AB14			BGIOSGA038318 (Supscaffold AAAA02037602.1: 3,877-5,590 forward strand.). Os02g0500700 ortholog.	 Biochemical character								
26251	BE1	OsBE1	BRANCHING ENZYME 1	Branching Enzyme 1	BRANCHING ENZYME 1	osbe1	6	GO:0102752: 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis).	 Biochemical character	Os06g0367100	LOC_Os06g26234.3, LOC_Os06g26234.2, LOC_Os06g26234.1				GO:0003844 - 1,4-alpha-glucan branching enzyme activity, GO:0019252 - starch biosynthetic process, GO:0009791 - post-embryonic development, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0043169 - cation binding, GO:0005978 - glycogen biosynthetic process, GO:0005983 - starch catabolic process, GO:0009658 - chloroplast organization, GO:0009501 - amyloplast, GO:0005737 - cytoplasm	TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000696 - starch content	
26252	NLG1	Tim21, OsTim21, OsNLG1	NARROW LEAF AND SLENDER GRAIN 1	narrow leaf and slender grain 1, mitochondrial import inner membrane translocase Tim21	TRANSLOCASE INNER MEMBRANE SUBUNIT 23	nlg1, nlg1-1, nlg1-2, nlg1-3	3	GO:0090351: seedling development. GO:2000024: regulation of leaf development. PO:0030123: panicle inflorescence. GO:2001006: regulation of cellulose biosynthetic process. GO:0060918: auxin transport. TO:0000975: grain width. GO:1901325: response to antimycin A. TO:0020109: vascular bundle development trait.	 Vegetative organ - Culm,  Seed - Morphological traits - Grain shape,  Character as QTL - Plant growth activity,  Vegetative organ - Leaf	Os03g0253800	LOC_Os03g14890.1, LOC_Os03g14890.2				GO:0007006 - mitochondrial membrane organization, GO:0005744 - mitochondrial inner membrane presequence translocase complex, GO:0030150 - protein import into mitochondrial matrix, GO:0048366 - leaf development, GO:0048316 - seed development, GO:0006754 - ATP biosynthetic process, GO:0009733 - response to auxin stimulus, GO:0009734 - auxin mediated signaling pathway, GO:0046034 - ATP metabolic process, GO:0030244 - cellulose biosynthetic process, GO:0042127 - regulation of cell proliferation, GO:0001558 - regulation of cell growth	TO:0000163 - auxin sensitivity, TO:0000370 - leaf width, TO:0000346 - tiller number, TO:0000207 - plant height, TO:0000135 - leaf length, TO:0000447 - filled grain number, TO:0000145 - internode length, TO:0000357 - growth and development trait, TO:0000558 - small vascular bundle number, TO:0000539 - large vascular bundle number, TO:0000472 - vascular bundle number, TO:0000339 - stem thickness, TO:0000566 - stomatal frequency, TO:0000655 - leaf development trait, TO:0002672 - auxin content, TO:0000397 - grain size, TO:0000653 - seed development trait	PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0001050 - leaf development stage , PO:0001170 - seed development stage , PO:0009005 - root , PO:0009047 - stem , PO:0005020 - vascular bundle , PO:0020104 - leaf sheath 
26253	TIM17	Tim17, OsTim17	TRANSLOCASE INNER MEMBRANE SUBUNIT 17	mitochondrial import inner membrane translocase Tim17	TRANSLOCASE INNER MEMBRANE SUBUNIT 17		3			Os03g0305600	LOC_Os03g19290.1, LOC_Os03g19290.2				GO:0022857 - transmembrane transporter activity, GO:0015171 - amino acid transmembrane transporter activity, GO:0016020 - membrane		
26254	TIM23	Tim23, OsTim23	TRANSLOCASE INNER MEMBRANE SUBUNIT 23	mitochondrial import inner membrane translocase Tim23	TRANSLOCASE INNER MEMBRANE SUBUNIT 23		2			Os02g0672500	LOC_Os02g45100.1				GO:0005744 - mitochondrial inner membrane presequence translocase complex, GO:0008320 - protein transmembrane transporter activity, GO:0030150 - protein import into mitochondrial matrix, GO:0022857 - transmembrane transporter activity, GO:0016020 - membrane		
26255	TOM22	Tom22, OsTom22	TRANSLOCASE OUTER MEMBRANE SUBUNIT 22	mitochondrial outer membrane translocase Tom22	TRANSLOCASE OUTER MEMBRANE SUBUNIT 22		2	CT828266.		Os02g0131600	LOC_Os02g03880.1				GO:0006886 - intracellular protein transport, GO:0005741 - mitochondrial outer membrane		
26256	XA48	Xa48t, OsXa48, Xa48(t)	XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 48				11	an NB-ARC domain-containing protein.	 Tolerance and resistance - Disease resistance	Os11g0687900	LOC_Os11g46080.1				GO:0042742 - defense response to bacterium, GO:0043531 - ADP binding, GO:0006952 - defense response	TO:0000175 - bacterial blight disease resistance	
26257	_		_	L-Ala-D/L-amino acid epimerase			1		 Biochemical character,  Tolerance and resistance - Disease resistance	Os01g0138900	LOC_Os01g04630.1				GO:0050832 - defense response to fungus, GO:0016855 - racemase and epimerase activity, acting on amino acids and derivatives, GO:0046872 - metal ion binding	TO:0000074 - blast disease	
26258	DUF568.1	OsDUF568.1	DUF568-CONTAINING PROTEIN 1	DUF568 family member 1, DUF568-containing protein 1	DUF568-CONTAINING PROTEIN 1		3		 Tolerance and resistance - Stress tolerance	Os03g0194300	LOC_Os03g09850.1				GO:0046872 - metal ion binding, GO:0001666 - response to hypoxia, GO:0009409 - response to cold, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0016020 - membrane	TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000015 - oxygen sensitivity, TO:0000303 - cold tolerance	
26259	DUF568.2	OsDUF568.2	DUF568-CONTAINING PROTEIN 2	DUF568 family member 2, DUF568-containing protein 2	DUF568-CONTAINING PROTEIN 2		3		 Tolerance and resistance - Stress tolerance	Os03g0194600	LOC_Os03g09880.1				GO:0001666 - response to hypoxia, GO:0009414 - response to water deprivation, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000015 - oxygen sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root 
26260	DUF568.3	OsDUF568.3	DUF568-CONTAINING PROTEIN 3	DUF568 family member 3, DUF568-containing protein 3	DUF568-CONTAINING PROTEIN 3		3		 Tolerance and resistance - Stress tolerance	Os03g0194900	LOC_Os03g09900.1				GO:0016020 - membrane, GO:0009735 - response to cytokinin stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0001666 - response to hypoxia, GO:0009753 - response to jasmonic acid stimulus, GO:0046872 - metal ion binding	TO:0000172 - jasmonic acid sensitivity, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0009005 - root , PO:0009047 - stem , PO:0020141 - stem node , PO:0025034 - leaf 
26261	DUF568.4	OsDUF568.4	DUF568-CONTAINING PROTEIN 4	DUF568 family member 4, DUF568-containing protein 4	DUF568-CONTAINING PROTEIN 4		8		 Tolerance and resistance - Stress tolerance	Os08g0335600	LOC_Os08g24790.1				GO:0009739 - response to gibberellin stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009409 - response to cold, GO:0001666 - response to hypoxia, GO:0009737 - response to abscisic acid stimulus, GO:0009733 - response to auxin stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity	PO:0009047 - stem , PO:0020141 - stem node , PO:0009005 - root 
26262	DUF568.5	OsDUF568.5	DUF568-CONTAINING PROTEIN 5	DUF568 family member 5, DUF568-containing protein 5	DUF568-CONTAINING PROTEIN 5		8		 Tolerance and resistance - Stress tolerance	Os08g0524200	LOC_Os08g41280.1				GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0001666 - response to hypoxia, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0046872 - metal ion binding, GO:0009737 - response to abscisic acid stimulus	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000015 - oxygen sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	PO:0020141 - stem node , PO:0009047 - stem , PO:0025034 - leaf , PO:0009046 - flower , PO:0000056 - flower bud , PO:0009005 - root 
26263	DUF568.6	OsDUF568.6	DUF568-CONTAINING PROTEIN 6	DUF568 family member 6, DUF568-containing protein 6	DUF568-CONTAINING PROTEIN 6		8	CT835910. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0524400	LOC_Os08g41290.1				GO:0009735 - response to cytokinin stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0016020 - membrane, GO:0001666 - response to hypoxia, GO:0009753 - response to jasmonic acid stimulus	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000015 - oxygen sensitivity	PO:0009047 - stem , PO:0009005 - root , PO:0009049 - inflorescence 
26264	DUF568.7	OsDUF568.7	DUF568-CONTAINING PROTEIN 7	DUF568 family member 7, DUF568-containing protein 7	DUF568-CONTAINING PROTEIN 7		9		 Tolerance and resistance - Stress tolerance	Os09g0500900	LOC_Os09g32470.1				GO:0001666 - response to hypoxia, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus, GO:0046872 - metal ion binding, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000015 - oxygen sensitivity, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0009005 - root 
26265	RBR7	OsRBR7	RICE BLAST RESISTANCE 7	rice blast resistance 7		rbr7	5	GO:0062098: regulation of programmed necrotic cell death.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os05g0352800	LOC_Os05g28480.1				GO:0005737 - cytoplasm, GO:0050776 - regulation of immune response, GO:0050832 - defense response to fungus, GO:0005634 - nucleus, GO:0009863 - salicylic acid mediated signaling pathway, GO:0010112 - regulation of systemic acquired resistance, GO:0009416 - response to light stimulus	TO:0000075 - light sensitivity, TO:0000063 - mimic response, TO:0000074 - blast disease, TO:0000605 - hydrogen peroxide content	
26266	GSE9	OsGSE9	GRAIN SHAPE ON CHROMOSOME 9 			gse9	9	The full coding sequence of GSE9 was identified in japonica and Or-III type of O. rufipogon, but not in indica and the other Oryza species. GO:0071555: cell wall organization. TO:0000975: grain width (Chen et al. 2023).	 Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os09g0242600	LOC_Os09g06719.1				GO:0001558 - regulation of cell growth, GO:0042127 - regulation of cell proliferation, GO:0051726 - regulation of cell cycle, GO:0006521 - regulation of cellular amino acid metabolic process	TO:0000564 - spikelet width, TO:0002730 - grain shape, TO:0002673 - amino acid content, TO:0000396 - grain yield, TO:0000382 - 1000-seed weight, TO:0002768 - spikelet length	
26267	DUF50601	OsDUF50601	DUF506 PROTEIN 1	domain of unknown function 560 protein 1, DUF506 protein 01	DUF506 PROTEIN 1		1		 Tolerance and resistance - Stress tolerance	Os01g0747300	LOC_Os01g54340.3, LOC_Os01g54340.1				GO:0009414 - response to water deprivation, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0009409 - response to cold	TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000303 - cold tolerance	
26269	DUF50602	OsDUF50602	DUF506 PROTEIN 2	domain of unknown function 560 protein 2, DUF506 protein 02	DUF506 PROTEIN 2		1		 Tolerance and resistance - Stress tolerance	Os01g0915000	LOC_Os01g68650.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast, GO:0009753 - response to jasmonic acid stimulus, GO:0009735 - response to cytokinin stimulus	TO:0000303 - cold tolerance, TO:0000167 - cytokinin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009009 - plant embryo , PO:0009089 - endosperm 
26270	DUF50603	OsDUF50603	DUF506 PROTEIN 3	domain of unknown function 560 protein 3, DUF506 protein 03	DUF506 PROTEIN 3		1		 Tolerance and resistance - Stress tolerance	Os01g0973600	LOC_Os01g74250.1				GO:0009737 - response to abscisic acid stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009507 - chloroplast	TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	
26271	DUF50604	OsDUF50604	DUF506 PROTEIN 4	domain of unknown function 560 protein 4, DUF506 protein 04	DUF506 PROTEIN 4		3		 Tolerance and resistance - Stress tolerance	Os03g0162500	LOC_Os03g06680.1				GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000163 - auxin sensitivity	PO:0009066 - anther 
26272	DUF50605	OsDUF50605	DUF506 PROTEIN 5	domain of unknown function 560 protein 5, DUF506 protein 05	DUF506 PROTEIN 5		3		 Tolerance and resistance - Stress tolerance	Os03g0796600	LOC_Os03g58230.1				GO:0009741 - response to brassinosteroid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009733 - response to auxin stimulus, GO:0009507 - chloroplast, GO:0042594 - response to starvation, GO:0016036 - cellular response to phosphate starvation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000163 - auxin sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0002677 - brassinosteroid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000303 - cold tolerance, TO:0000615 - abscisic acid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
26273	DUF50606	OsDUF50606	DUF506 PROTEIN 6	domain of unknown function 560 protein 6, DUF506 protein 06	DUF506 PROTEIN 6		5		 Tolerance and resistance - Stress tolerance	Os05g0519300	LOC_Os05g44300.1				GO:0005634 - nucleus, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance	
26274	DUF50607	OsDUF50607	DUF506 PROTEIN 7	domain of unknown function 560 protein 7, DUF506 protein 07	DUF506 PROTEIN 7		7		 Tolerance and resistance - Stress tolerance	Os07g0181500	LOC_Os07g08390.2				GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0009741 - response to brassinosteroid stimulus, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0016036 - cellular response to phosphate starvation, GO:0042594 - response to starvation, GO:0009507 - chloroplast	TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity, TO:0000303 - cold tolerance, TO:0000172 - jasmonic acid sensitivity, TO:0000102 - phosphorus sensitivity, TO:0000276 - drought tolerance, TO:0002677 - brassinosteroid sensitivity	PO:0020104 - leaf sheath , PO:0025034 - leaf 
26275	DUF50608	OsDUF50608	DUF506 PROTEIN 8	domain of unknown function 560 protein 8, DUF506 protein 08	DUF506 PROTEIN 8		10		 Tolerance and resistance - Stress tolerance	Os10g0417800	LOC_Os10g28210.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast, GO:0009733 - response to auxin stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009741 - response to brassinosteroid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000303 - cold tolerance, TO:0002677 - brassinosteroid sensitivity, TO:0000172 - jasmonic acid sensitivity, TO:0000276 - drought tolerance, TO:0000163 - auxin sensitivity	PO:0020104 - leaf sheath 
26276	DUF50609	OsDUF50609	DUF506 PROTEIN 9	domain of unknown function 560 protein 9, DUF506 protein 09	DUF506 PROTEIN 9		11			Os11g0437100	LOC_Os11g25020.1				GO:0009507 - chloroplast		
26277	DUF50610	OsDUF50610	DUF506 PROTEIN 10	domain of unknown function 560 protein 10, DUF506 protein 10	DUF506 PROTEIN 10		11			Os11g0437600	LOC_Os11g25040.1				GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast	TO:0000615 - abscisic acid sensitivity	
26278	P2B	OsP2B	RIBOSOMAL PROTEIN P2B	ribosomal protein P2B	RIBOSOMAL PROTEIN P2B		2	GO:0002182: cytoplasmic translational elongation.		Os02g0529700	LOC_Os02g32760.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome		
26279	P2D	OsP2D	RIBOSOMAL PROTEIN P2D	ribosomal protein P2D	RIBOSOMAL PROTEIN P2D		7	GO:0002182: cytoplasmic translational elongation.		Os07g0251301	LOC_Os07g14750.1				GO:0003735 - structural constituent of ribosome, GO:0022625 - cytosolic large ribosomal subunit		
26280	P2E	OsP2E	RIBOSOMAL PROTEIN P2E	ribosomal protein P2E	RIBOSOMAL PROTEIN P2E		7	GO:0002182: cytoplasmic translational elongation.		Os07g0470300	LOC_Os07g28710.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome		
26281	P2F	OsP2F	RIBOSOMAL PROTEIN P2F	ribosomal protein P2F	RIBOSOMAL PROTEIN P2F		8	GO:0002182: cytoplasmic translational elongation.		Os08g0250300	LOC_Os08g15180.1				GO:0022625 - cytosolic large ribosomal subunit, GO:0003735 - structural constituent of ribosome		
26282	SSL7	OsSSL7	STRICTOSIDINE SYNTHASE-LIKE 7		STRICTOSIDINE SYNTHASE-LIKE 7		7		 Biochemical character		LOC_Os07g36060.1				GO:0005773 - vacuole, GO:0016844 - strictosidine synthase activity, GO:0009058 - biosynthetic process		
26283	SSL12	OsSSL12	STRICTOSIDINE SYNTHASE-LIKE 12		STRICTOSIDINE SYNTHASE-LIKE 12		9	XM_015755680.2	 Biochemical character	Os09g0373400					GO:0009058 - biosynthetic process, GO:0005773 - vacuole, GO:0003723 - RNA binding, GO:0016844 - strictosidine synthase activity		
26284	_	AB2E_Ath	_				10	ABC transporter.	 Tolerance and resistance - Stress tolerance,  Biochemical character	Os10g0432200	LOC_Os10g29650.3, LOC_Os10g29650.2, LOC_Os10g29650.1				GO:0016887 - ATPase activity, GO:0009651 - response to salt stress, GO:0005524 - ATP binding	TO:0006001 - salt tolerance	
26285	_	OCT7_Ath	_				3	organic cation/carnitine transporter.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os03g0638200	LOC_Os03g43720.6, LOC_Os03g43720.1, LOC_Os03g43720.2, LOC_Os03g43720.3, LOC_Os03g43720.4, LOC_Os03g43720.5, LOC_Os03g43720.7				GO:0008643 - carbohydrate transport, GO:0015293 - symporter activity, GO:0016020 - membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26286	_	NRAM6	_				1	metal transporter Nramp. CT837791.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0733001	LOC_Os01g53210.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0046873 - metal ion transmembrane transporter activity	TO:0006001 - salt tolerance	
26287	SOP10	OsSOP10	SUPPRESSOR OF OSPUS1	suppressor of ospus1	SUPPRESSOR OF OSPUS1	sop10, sop10-1, sop10-2, sop10CR	2	A mitochondrial pentatricopeptide repeat protein. GO:1903426: regulation of reactive oxygen species biosynthetic process. GO:0080156: mitochondrial mRNA modification.	 Tolerance and resistance - Stress tolerance	Os02g0167200	LOC_Os02g07050.1				GO:0003729 - mRNA binding, GO:0000373 - Group II intron splicing, GO:0009451 - RNA modification, GO:0043231 - intracellular membrane-bounded organelle, GO:0009409 - response to cold, GO:0090322 - regulation of superoxide metabolic process	TO:0000303 - cold tolerance, TO:0000605 - hydrogen peroxide content	
26288	MSTRG.4676.1		LONG NON-CODING RNA MSTRG.4676.1	lncRNA MSTRG.4676.1, long non-coding RNA MSTRG.4676.1			10	chromosome 10: 11079933-11087253. MSTRG.4676.1 overlapped with the reference lncRNA transcript Os10t0360600-01, suggesting that MSTRG.4676.1 may represent a novel transcript isoform of Os10t0360600-01. 	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26289	MSTRG.5751.1		LONG NON-CODING RNA MSTRG.5751.1	lncRNA MSTRG.5751.1, long non-coding RNA MSTRG.5751.1			10	chromosome 10: 22513417-22514001. MSTRG.5751.1 is positioned within the promoter region of Os10g0567900. target gene(s): Os01g0113450, Os07g0153150, and Os03g0835600 (OsACBP6). MSTRG.5751.1 acts as trans-regulator of OsACBP6.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26290	MSTRG.4506.1		LONG NON-CODING RNA MSTRG.4506.1	lncRNA MSTRG.4506.1, long non-coding RNA MSTRG.4506.1			10	chromosome 10: 5804437-5805533. target gene(s): Os03g0835600 (OsACBP6). MSTRG.4506.1 acts as trans-regulator of OsACBP6.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26291	Os05t0475550-00		LONG NON-CODING RNA Os05t0475550-00	lncRNA Os05t0475550-00, long non-coding RNA Os05t0475550-00			5	target gene(s): Os03g0835600 (OsACBP6). Os05t0475550-00 acts as trans-regulator of OsACBP6.	 Tolerance and resistance - Disease resistance	Os05g0475550					GO:0006952 - defense response	TO:0000112 - disease resistance	
26292	MSTRG.7147.1		LONG NON-CODING RNA MSTRG.7147.1	lncRNA MSTRG.7147.1, long non-coding RNA MSTRG.7147.1			11	chromosome 11: 19534498-19534758. trans mRNA targets: Os02g0185633, Os08g0543900, and Os02g0569400.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26293	MSTRG.4760.1		LONG NON-CODING RNAMSTRG.4760.1	lncRNA MSTRG.4760.1, long non-coding RNA MSTRG.4760.1			10	chromosome 10: 11783794-11788322. target gene(s): Os10g0370800.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26294	MSTRG.4754.1		LONG NON-CODING MSTRG.4754.1	lncRNA MSTRG.4754.1, long non-coding RNA MSTRG.4754.1			10	chromosome 10: 11750575-11754139. target gene(s): Os10g0370800.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26295	MSTRG.10312.1		LONG NON-CODING MSTRG.10312.1	lncRNA MSTRG.10312.1, long non-coding RNA MSTRG.10312.1			2	chromosome 2: 7323916-7325579. cis target gene(s): Os02g0230300. MSTRG.10312.1 not only occupies the promoter region of its cis target Os02t0230300-01 but also functions as a sense lncRNA that partially overlaps with it.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26296	MSTRG.24461.2		LONG NON-CODING MSTRG.24461.2	lncRNA MSTRG.24461.2, long non-coding RNA MSTRG.24461.2			7	chromosome 7: 4984672-4994785. MSTRG.24461.2 emerged as a target for several miRNAs, including members of the osa- miR166 family (osa-miR166k-3p and osa-miR166l-3p) and osa-miR1882 family (osa-miR1882a, osa-miR1882b, osa-miR1882c, osa-miR1882d, osa-miR1882e-5p, osa- miR1882f, osa-miR1882g, and osa-miR1882h).	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26297	MSTRG.16012.6		LONG NON-CODING MSTRG.16012.6	lncRNA MSTRG.16012.6, long non-coding RNA MSTRG.16012.6			3	chromosome 3: 31997920-32000674. MSTRG.16012.6 was found to be targeted by osa-miR171d-5p.	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26298	MSTRG.17424.2 		LONG NON-CODING MSTRG.17424.2 	lncRNA MSTRG.17424.2, long non-coding RNA MSTRG.17424.2			4	chromosome 4: 20338833-20341183. MSTRG.17424.2 was identified as a target of the osa-miR1846 family miRNAs, osa-miR1846a- 5p and osa-miR1846b-5p. 	 Tolerance and resistance - Disease resistance						GO:0006952 - defense response	TO:0000112 - disease resistance	
26299	Os01t0678900-01		LONG NON-CODING RNA Os01t0678900-01	lncRNA Os01t0678900-01, long non-coding RNA Os01t0678900-01			1	cis target gene(s): Os01g0678800 (HIPP49). 	 Tolerance and resistance - Disease resistance	Os05g0475550					GO:0006952 - defense response	TO:0000112 - disease resistance	
26300	Os06t0128200-03		LONG NON-CODING RNA Os06t0128200-03	lncRNA Os06t0128200-03, long non-coding RNA Os06t0128200-03			6	cis target gene(s): Os06g0129900. 	 Tolerance and resistance - Disease resistance	Os05g0475550					GO:0006952 - defense response	TO:0000112 - disease resistance	
26301	_		_	Hypothetical protein			1	an mRNA target of MSTRG.5751.1.		Os01g0113450							
26302	_		_	Hypothetical protein			2	an mRNA target of MSTRG.7147.1.		Os02g0185633							
26303	_		_	protein similar to Exo-1, 3-beta-glucanase precursor			10	an mRNA target of MSTRG.4760.1 and MSTRG.4754.1. GO:0071704: organic substance metabolic process.	 Biochemical character	Os10g0370800	LOC_Os10g22570.1				GO:0051015 - actin filament binding, GO:0005737 - cytoplasm, GO:0015629 - actin cytoskeleton, GO:0007015 - actin filament organization, GO:0007163 - establishment or maintenance of cell polarity, GO:0016477 - cell migration, GO:0005975 - carbohydrate metabolic process, GO:0051017 - actin filament bundle formation, GO:0016985 - mannan endo-1,4-beta-mannosidase activity		
26304	_		_	CYP family protein			6	an mRNA target of lncRNA Os06t0128200-03. 	 Biochemical character	Os06g0129900	LOC_Os06g03930.1, LOC_Os06g03930.2				GO:0020037 - heme binding, GO:0005506 - iron ion binding, GO:0004497 - monooxygenase activity, GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, GO:0016020 - membrane		
26305	_		_	protein similar to MADS-box transcription factor 30			3	a target of osa-miR1882 (miR1882a, miR1882b, miR1882c, miR1882d, miR1882e-5p, miR1882f, miR1882g, miR1882h).		Os03g0170200	LOC_Os03g07410.1, LOC_Os03g07410.3				GO:0016020 - membrane		
26306	_		_	protein similar to Arginine decarboxylase			4	a target of osa-miR1846 (osa-miR1846a-5p and osa-miR1846b-5p). 		Os04g0107650							
26307	DGP1B	OsDGP1B	DEEP GREEN PANICLE 1B	DGP1 paralog B			5			Os05g0462000	LOC_Os05g38680.1						
26308	DGP1C	OsDGP1C	DEEP GREEN PANICLE 1C	DGP1 paralog C			3			Os03g0280400	LOC_Os03g17200.1						
26309	TGAL3A	OsTGAL3a	TGACG-BINDING FACTOR-LIKE 3A	TGACG-BINDING FACTOR-like3a	TGACG-BINDING FACTOR-LIKE 3A		10		 Tolerance and resistance - Disease resistance	Os10g0566200	LOC_Os10g41640.1				GO:0007623 - circadian rhythm, GO:0043565 - sequence-specific DNA binding, GO:0006351 - transcription, DNA-dependent, GO:0006952 - defense response	TO:0000112 - disease resistance	
26310	TGAL3B	OsTGAL3b	TGACG-BINDING FACTOR-LIKE 3B	TGACG-BINDING FACTOR-like3b	TGACG-BINDING FACTOR-LIKE 3B		1		 Tolerance and resistance - Disease resistance	Os01g0882200	LOC_Os01g65970.1				GO:0006952 - defense response, GO:0006351 - transcription, DNA-dependent, GO:0007623 - circadian rhythm, GO:0043565 - sequence-specific DNA binding	TO:0000112 - disease resistance	
26311	DUYAO	OsDUYAO	_				12	OQ351923. BGIOSGA036748. RHS12 (rice Hybrid sterility on chromosome 12) controls male gamete sterility in indica-japonica hybrid rice. RHS12 consists of two genes: iORF3/DUYAO (which means toxin in Chinese) and iORF4/JIEYAO (which means antidote in Chinese) in indica-type RHS12 allele (RHS12-i). DUYAO encodes a toxin that kills the pollen carrying the RHS12-j allele. Japonica-type RHS12-j allele lacks DUYAO and JIEYAO. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness						GO:0005739 - mitochondrion, GO:0043068 - positive regulation of programmed cell death, GO:0003676 - nucleic acid binding, GO:0004523 - ribonuclease H activity	TO:0000053 - pollen sterility, TO:0000036 - hybrid incompatibility, TO:0000421 - pollen fertility	PO:0009066 - anther , PO:0000003 - whole plant , PO:0009049 - inflorescence , PO:0025034 - leaf , PO:0020141 - stem node , PO:0009047 - stem , PO:0009051 - spikelet , PO:0009046 - flower , PO:0009030 - carpel 
26312	JIEYAO	OsJIEYAO	_				12	OQ351924. BGIOSGA036747. Os12g0118800 ortholog. RHS12 (rice Hybrid sterility on chromosome 12) controls male gamete sterility in indica-japonica hybrid rice. RHS12 consists of two genes: iORF3/DUYAO (which means toxin in Chinese) and iORF4/JIEYAO (which means antidote in Chinese) in indica-type RHS12 allele (RHS12-i). JIEYAO encodes an antidote to protect the pollen carrying the RHS12-i allele. Japonica-type RHS12-j allele lacks DUYAO and JIEYAO. PO:0030123: panicle inflorescence. GO:0071211: protein targeting to vacuole involved in autophagy.	 Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility, hybrid weakness						GO:0005776 - autophagic vacuole, GO:0005771 - multivesicular body, GO:0010508 - positive regulation of autophagy, GO:0045732 - positive regulation of protein catabolic process, GO:0016567 - protein ubiquitination	TO:0000421 - pollen fertility, TO:0000036 - hybrid incompatibility, TO:0000053 - pollen sterility	PO:0000003 - whole plant , PO:0009030 - carpel , PO:0009066 - anther , PO:0009046 - flower , PO:0009051 - spikelet , PO:0009047 - stem , PO:0020141 - stem node , PO:0025034 - leaf , PO:0009049 - inflorescence 
26313	WSD1		WEAK SEED DORMANCY 1			wsd1	3	a protein containing an aminotransferase domain. GO:1902040: positive regulation of seed dormancy process. GO:0080144: intracellular amino acid homeostasis. GO:2000282: regulation of cellular amino acid biosynthetic process. TO:0000975: grain width.	 Seed - Morphological traits - Grain shape,  Biochemical character,  Vegetative organ - Culm,  Seed - Physiological traits - Dormancy	Os03g0359100	LOC_Os03g24460.3, LOC_Os03g24460.2				GO:0010162 - seed dormancy, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0010371 - regulation of gibberellin biosynthetic process, GO:0008652 - cellular amino acid biosynthetic process, GO:0009938 - negative regulation of gibberellic acid mediated signaling, GO:0009737 - response to abscisic acid stimulus, GO:0005783 - endoplasmic reticulum	TO:0000253 - seed dormancy, TO:0002673 - amino acid content, TO:0000382 - 1000-seed weight, TO:0000734 - grain length, TO:0000207 - plant height, TO:0000615 - abscisic acid sensitivity, TO:0002675 - gibberellic acid content, TO:0000430 - germination rate	PO:0007022 - seed imbibition stage 
26314	UVR8	OsUVR8	ULTRAVIOLET-B RESISTANCE 8	ultraviolet-B resistance 8			12		 Tolerance and resistance - Stress tolerance	Os12g0284000  	LOC_Os12g18650.6, LOC_Os12g18650.5, LOC_Os12g18650.4, LOC_Os12g18650.3, LOC_Os12g18650.1, LOC_Os12g18650.2, LOC_Os12g18650.7						
26315	XLOC_042442		LNCRNA XLOC_042442	lncRNA XLOC_042442, long non-coding RNA XLOC_042442			4	target: miR1846c.	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
26316	XLOC_028297		LNCRNA XLOC_028297	lncRNA XLOC_028297, long non-coding RNA XLOC_028297			2	target: miR530.	 Tolerance and resistance - Insect resistance						GO:0002213 - defense response to insect	TO:0000424 - brown planthopper resistance	
26317	LSIR76113	lsiR76113, OslsiR76113	LONG SMALL INTERFERING RNA 76113	Long small RNA76113, Long small interfering RNA76113				target gene: LOC_Os12g28260 (CNGC5). GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. GO: 1903427: negative regulation of reactive oxygen species biosynthetic process. GO:0090281: negative regulation of calcium ion import.	 Tolerance and resistance - Disease resistance						GO:0010200 - response to chitin, GO:0002238 - response to molecule of fungal origin, GO:0002237 - response to molecule of bacterial origin, GO:0002758 - innate immune response-activating signal transduction, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0070509 - calcium ion import, GO:0019722 - calcium-mediated signaling, GO:0043409 - negative regulation of MAPKKK cascade	TO:0000074 - blast disease, TO:0000255 - sheath blight disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000605 - hydrogen peroxide content	
26318	HARBI1-1	OsHARBI1-1	HARBINGER TRANSPOSASE DERIVED 1-1	Harbinger Transposase Derived 1-1	HARBINGER TRANSPOSASE DERIVED 1-1		1	GO:1990170: stress response to cadmium ion. TO:0006059: cadmium content trait.	 Tolerance and resistance - Stress tolerance	Os01g0582600	LOC_Os01g40070.1				GO:0009867 - jasmonic acid mediated signaling pathway, GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0009738 - abscisic acid mediated signaling, GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0046686 - response to cadmium ion	TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity	
26319	HARBI1-2	OsHARBI1-2	HARBINGER TRANSPOSASE DERIVED 1-2	Harbinger Transposase Derived 1-2	HARBINGER TRANSPOSASE DERIVED 1-2		1			Os01g0186900	LOC_Os01g09220.1				GO:0004518 - nuclease activity, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
26320	HARBI1-3	OsHARBI1-3	HARBINGER TRANSPOSASE DERIVED 1-3	Harbinger Transposase Derived 1-3	HARBINGER TRANSPOSASE DERIVED 1-3		1			Os01g0838900	LOC_Os01g62160.1				GO:0004518 - nuclease activity, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
26321	HARBI1-4	OsHARBI1-4	HARBINGER TRANSPOSASE DERIVED 1-4	Harbinger Transposase Derived 1-4	HARBINGER TRANSPOSASE DERIVED 1-4		1			Os01g0894100	LOC_Os01g66930.2				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0004518 - nuclease activity		
26322	HARBI1-5	OsHARBI1-5	HARBINGER TRANSPOSASE DERIVED 1-5	Harbinger Transposase Derived 1-5	HARBINGER TRANSPOSASE DERIVED 1-5		2			Os02g0231600	LOC_Os02g13770.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0004518 - nuclease activity		
26323	HARBI1-6	OsHARBI1-6	HARBINGER TRANSPOSASE DERIVED 1-6	Harbinger Transposase Derived 1-6	HARBINGER TRANSPOSASE DERIVED 1-6		3			Os03g0608700	LOC_Os03g41200.4, LOC_Os03g41200.6, LOC_Os03g41200.1, LOC_Os03g41200.5, LOC_Os03g41200.2				GO:0004518 - nuclease activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
26324	HARBI1-7	OsHARBI1-7	HARBINGER TRANSPOSASE DERIVED 1-7	Harbinger Transposase Derived 1-7	HARBINGER TRANSPOSASE DERIVED 1-7		3			Os03g0643050					GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0004518 - nuclease activity		
26325	HARBI1-8	OsHARBI1-8	HARBINGER TRANSPOSASE DERIVED 1-8	Harbinger Transposase Derived 1-8	HARBINGER TRANSPOSASE DERIVED 1-8		4			Os04g0422900	LOC_Os04g34550.1				GO:0004518 - nuclease activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
26326	HARBI1-9	OsHARBI1-9	HARBINGER TRANSPOSASE DERIVED 1-9	Harbinger Transposase Derived 1-9	HARBINGER TRANSPOSASE DERIVED 1-9		4			Os04g0471100	LOC_Os04g39530.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0004518 - nuclease activity		
26327	HARBI1-10	OsHARBI1-10	HARBINGER TRANSPOSASE DERIVED 1-10	Harbinger Transposase Derived 1-10	HARBINGER TRANSPOSASE DERIVED 1-10		4			Os04g0644200	LOC_Os04g55130.1				GO:0004518 - nuclease activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
26328	HARBI1-11	OsHARBI1-11	HARBINGER TRANSPOSASE DERIVED 1-11	Harbinger Transposase Derived 1-11	HARBINGER TRANSPOSASE DERIVED 1-11		5			Os05g0183900	LOC_Os05g09150.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0004518 - nuclease activity		
26329	HARBI1-12	OsHARBI1-12	HARBINGER TRANSPOSASE DERIVED 1-12	Harbinger Transposase Derived 1-12	HARBINGER TRANSPOSASE DERIVED 1-12		5			Os05g0184500	LOC_Os05g09210.1				GO:0004518 - nuclease activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
26330	HARBI1-13	OsHARBI1-13	HARBINGER TRANSPOSASE DERIVED 1-13	Harbinger Transposase Derived 1-13	HARBINGER TRANSPOSASE DERIVED 1-13		5			Os05g0184901	LOC_Os05g09280.1				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0004518 - nuclease activity		
26331	HARBI1-14	OsHARBI1-14	HARBINGER TRANSPOSASE DERIVED 1-14	Harbinger Transposase Derived 1-14	HARBINGER TRANSPOSASE DERIVED 1-14		5			Os05g0252801	LOC_Os05g16400.1				GO:0004518 - nuclease activity, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
26332	HARBI1-15	OsHARBI1-15	HARBINGER TRANSPOSASE DERIVED 1-15	Harbinger Transposase Derived 1-15	HARBINGER TRANSPOSASE DERIVED 1-15		5			Os05g0593000	LOC_Os05g51520.1				GO:0004518 - nuclease activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
26333	HARBI1-16	OsHARBI1-16	HARBINGER TRANSPOSASE DERIVED 1-16	Harbinger Transposase Derived 1-16	HARBINGER TRANSPOSASE DERIVED 1-16		6			Os06g0164500	LOC_Os06g06910.1				GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0005634 - nucleus		
26334	HARBI1-17	OsHARBI1-17	HARBINGER TRANSPOSASE DERIVED 1-17	Harbinger Transposase Derived 1-17	HARBINGER TRANSPOSASE DERIVED 1-17		6			Os06g0190950	LOC_Os06g09150.1				GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0005634 - nucleus		
26335	HARBI1-18	OsHARBI1-18	HARBINGER TRANSPOSASE DERIVED 1-18	Harbinger Transposase Derived 1-18	HARBINGER TRANSPOSASE DERIVED 1-18		6			Os06g0226000	LOC_Os06g12170.8, LOC_Os06g12170.7, LOC_Os06g12170.6, LOC_Os06g12170.5, LOC_Os06g12170.4, LOC_Os06g12170.3, LOC_Os06g12170.1, LOC_Os06g12170.2				GO:0005634 - nucleus, GO:0046872 - metal ion binding, GO:0004518 - nuclease activity		
26336	HARBI1-19	OsHARBI1-19	HARBINGER TRANSPOSASE DERIVED 1-19	Harbinger Transposase Derived 1-19	HARBINGER TRANSPOSASE DERIVED 1-19		6			Os06g0481850					GO:0005634 - nucleus, GO:0004518 - nuclease activity, GO:0046872 - metal ion binding		
26337	HARBI1-20	OsHARBI1-20	HARBINGER TRANSPOSASE DERIVED 1-20	Harbinger Transposase Derived 1-20	HARBINGER TRANSPOSASE DERIVED 1-20		6			Os06g0595433	LOC_Os06g39460.1				GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0005634 - nucleus		
26338	HARBI1-21	OsHARBI1-21	HARBINGER TRANSPOSASE DERIVED 1-21	Harbinger Transposase Derived 1-21	HARBINGER TRANSPOSASE DERIVED 1-21		7			Os07g0116050					GO:0004518 - nuclease activity, GO:0046872 - metal ion binding, GO:0005634 - nucleus		
26339	HARBI1-23	OsHARBI1-23	HARBINGER TRANSPOSASE DERIVED 1-23	Harbinger Transposase Derived 1-23	HARBINGER TRANSPOSASE DERIVED 1-23		8			Os08g0106900	LOC_Os08g01570.1				GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0005634 - nucleus		
26340	HARBI1-24	OsHARBI1-24	HARBINGER TRANSPOSASE DERIVED 1-24	Harbinger Transposase Derived 1-24	HARBINGER TRANSPOSASE DERIVED 1-24		9			Os09g0122100					GO:0004518 - nuclease activity, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
26341	HARBI1-25	OsHARBI1-25	HARBINGER TRANSPOSASE DERIVED 1-25	Harbinger Transposase Derived 1-25	HARBINGER TRANSPOSASE DERIVED 1-25		9			Os09g0292300	LOC_Os09g12050.1				GO:0046872 - metal ion binding		
26342	HARBI1-26	OsHARBI1-26	HARBINGER TRANSPOSASE DERIVED 1-26	Harbinger Transposase Derived 1-26	HARBINGER TRANSPOSASE DERIVED 1-26		10			Os10g0126100	LOC_Os10g03700.1				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0004518 - nuclease activity		
26343	HARBI1-27	OsHARBI1-27	HARBINGER TRANSPOSASE DERIVED 1-27	Harbinger Transposase Derived 1-27	HARBINGER TRANSPOSASE DERIVED 1-27		10			Os10g0460733	LOC_Os10g32290.1				GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0005634 - nucleus		
26344	HARBI1-28	OsHARBI1-28	HARBINGER TRANSPOSASE DERIVED 1-28	Harbinger Transposase Derived 1-28	HARBINGER TRANSPOSASE DERIVED 1-28		10			Os10g0468250					GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0005634 - nucleus		
26345	HARBI1-29	OsHARBI1-29	HARBINGER TRANSPOSASE DERIVED 1-29	Harbinger Transposase Derived 1-29	HARBINGER TRANSPOSASE DERIVED 1-29		11			Os11g0202600	LOC_Os11g09710.1				GO:0005634 - nucleus, GO:0008270 - zinc ion binding, GO:0046872 - metal ion binding, GO:0004518 - nuclease activity		
26346	HARBI1-30	OsHARBI1-30	HARBINGER TRANSPOSASE DERIVED 1-30	Harbinger Transposase Derived 1-30	HARBINGER TRANSPOSASE DERIVED 1-30		11			Os11g0577650	LOC_Os11g36920.1				GO:0046872 - metal ion binding, GO:0004518 - nuclease activity, GO:0005634 - nucleus, GO:0016020 - membrane		
26347	HARBI1-31	OsHARBI1-31	HARBINGER TRANSPOSASE DERIVED 1-31	Harbinger Transposase Derived 1-31	HARBINGER TRANSPOSASE DERIVED 1-31		11			Os11g0702700	LOC_Os11g47650.1, LOC_Os11g47650.2				GO:0046872 - metal ion binding, GO:0005634 - nucleus, GO:0004518 - nuclease activity		
26348	HARBI1-32	OsHARBI1-32	HARBINGER TRANSPOSASE DERIVED 1-32	Harbinger Transposase Derived 1-32	HARBINGER TRANSPOSASE DERIVED 1-32		12			Os12g0299600					GO:0004518 - nuclease activity, GO:0005634 - nucleus, GO:0046872 - metal ion binding		
26349	HARBI1-33	OsHARBI1-33	HARBINGER TRANSPOSASE DERIVED 1-33	Harbinger Transposase Derived 1-33	HARBINGER TRANSPOSASE DERIVED 1-33		12			Os12g0500800	LOC_Os12g31660.1				GO:0005634 - nucleus, GO:0004518 - nuclease activity, GO:0046872 - metal ion binding		
26350	_		_				1	a DUF538 (Domain of unknown function) containing protein. the causal gene for qSL-1f (QTL for shoot length-1f).	 Vegetative organ - Culm	Os01g0913100	LOC_Os01g68500.1					TO:0000019 - seedling height	
26351	_	OsML1, ML1	_	mesocotyl length 1			7		 Vegetative organ - Culm	Os07g0423000	LOC_Os07g24090.1					TO:0000544 - mesocotyl length	
26352	PERK1	OsPERK1	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 1	proline-rich extensin-like receptor kinase 1	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 1		1			Os01g0227200	LOC_Os01g12720.1					TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000163 - auxin sensitivity	
26353	PERK2	OsPERK2	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 2	proline-rich extensin-like receptor kinase 2	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 2		3			Os03g0269300	LOC_Os03g16260.1						
26354	PERK3	OsPERK3	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 3	proline-rich extensin-like receptor kinase 3	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 3		3			Os03g0583600	LOC_Os03g38710.1						
26355	PERK4	OsPERK4	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 4	proline-rich extensin-like receptor kinase 4	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 4		3			Os03g0776100	LOC_Os03g56470.1					TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	
26356	PERK8	OsPERK8	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 8	proline-rich extensin-like receptor kinase 8	PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 8		10		 Tolerance and resistance - Disease resistance	Os10g0104800	LOC_Os10g01560.1					TO:0000615 - abscisic acid sensitivity, TO:0000439 - fungal disease resistance, TO:0000166 - gibberellic acid sensitivity	
26357	PDR18	OsPDR18, OsABCG52, ABCG52	PLEIOTROPIC DRUG RESISTANCE FOR ABCG 18	pleiotropic drug resistance for ABCG 18			9		 Tolerance and resistance - Stress tolerance	Os09g0333500	LOC_Os09g16449.3, LOC_Os09g16449.2, LOC_Os09g16449.1					TO:0002649 - pesticide sensitivity	
26358	SGAT	OsSGAT	SER:GLYOXYLATE AMINOTRANSFERASE	Ser:glyoxylate aminotransferase	SER:GLYOXYLATE AMINOTRANSFERASE		8			Os08g0502700	LOC_Os08g39300.1, LOC_Os08g39300.2, LOC_Os08g39300.3, LOC_Os08g39300.4						
26359	SYP22	OsSYP22	SYNTAXIN OF PLANTS 22	syntaxin of plants 22	SYNTAXIN OF PLANTS 22		1			Os01g0254900	LOC_Os01g15110.1						
26360	SYP21	OsSYP21	SYNTAXIN OF PLANTS 21	syntaxin of plants 21	SYNTAXIN OF PLANTS 21		2			Os02g0702800	LOC_Os02g47440.3, LOC_Os02g47440.2, LOC_Os02g47440.1						
26361	IPCS3	OsIPCS3	INOSITOLPHOSPHORYLCERAMIDE SYNTHASE 3	Inositolphosphorylceramide synthase 3	INOSITOLPHOSPHORYLCERAMIDE SYNTHASE 3		5		 Vegetative organ - Culm,  Character as QTL - Plant growth activity	Os05g0287800	LOC_Os05g21180.4, LOC_Os05g21180.1, LOC_Os05g21180.2, LOC_Os05g21180.3					TO:0000207 - plant height, TO:0000357 - growth and development trait	
26362	CORK1	OsCORK1	COPPER-RESPONSE RECEPTOR-LIKE KINASE 1	Copper-response receptor-like kinase 1	COPPER-RESPONSE RECEPTOR-LIKE KINASE 1		7		 Tolerance and resistance - Stress tolerance	Os07g0569800	LOC_Os07g38250.1					TO:0000021 - copper sensitivity	
26363	HLT1	OsHLT1	HIGH LIGHT SENSITIVE 1	High Light Sensitive 1			12			Os12g0609500	LOC_Os12g41590.1						
26364	FANCM	OsFANCM	_				11			Os11g0180600	LOC_Os11g07870.1						
26365	GAPLESS2	OsGAPLESS2	GAPLESS 2				3			Os03g0245500	LOC_Os03g14150.1						
26366	GAPLESS3	OsGAPLESS3	GAPLESS 3				9			Os09g0535400	LOC_Os09g36490.1						
26367	GAPLESS1	OsGAPLESS1	GAPLESS 1				10			Os10g0155100	LOC_Os10g06680.1						
26368	XTH5	OsXTH5	XYLOGLUCAN ENDO TRANSHYDROLASE/GLUCOSYLASE 5	xyloglucan endo transhydrolase/glucosylase 5	XYLOGLUCAN ENDO TRANSHYDROLASE/GLUCOSYLASE 5		8		 Tolerance and resistance - Stress tolerance	Os08g0240566	LOC_Os08g14210.1					TO:0000188 - drought sensitivity	
26369	PML2	OsPML2	PHOTOSYNTHESIS-AFFECTED MUTANT 71-LIKE 2				11	Q2R2Z4. 		Os11g0544500	LOC_Os11g34180.1					TO:0020091 - manganese content	
26370	LECRK-VIII.2	OsLecRK-VIII.2, LecRK-VIII.2	LECTIN RECEPTOR-LIKE KINASE-VIII.2	lectin receptor-like kinase-VIII.2	LECTIN RECEPTOR-LIKE KINASE-VIII.2		5		 Seed	Os05g0125200	LOC_Os05g03450.1					TO:0000653 - seed development trait	
26371	SAB23	OsSAB23	SUB1A BINDING PROTEIN 23	Sub1A binding protein 23	SUB1A BINDING PROTEIN 23		12		 Tolerance and resistance - Stress tolerance	Os12g0514400	LOC_Os12g32980.1					TO:0000524 - submergence tolerance	
26372	RNR10	OsRNR10	REGULATOR OF N-RESPONSIVE RSA ON CHROMOSOME 10		REGULATOR OF N-RESPONSIVE RSA ON CHROMOSOME 10		10			Os10g0567900	LOC_Os10g41838.2, LOC_Os10g41838.1						
26373	PAP3	OsPAP3	PEP-ASSOCIATED PROTEIN 3		PEP-ASSOCIATED PROTEIN 3		1		 Vegetative organ - Leaf	Os01g0901900	LOC_Os01g67570.1					TO:0002715 - chloroplast development trait	
26374	SMR1	OsSMR1	SIAMESE-RELATED 1		SIAMESE-RELATED 1		10	Q9AV28. 		Os10g0546400	LOC_Os10g39920.1						
26375	CIF2	OsCIF2	CS INTEGRITY FACTOR 2	CS INTEGRITY FACTOR2	CS INTEGRITY FACTOR 2		1			Os01g0260800	LOC_Os01g15610.1						
26376	SGN3B	OsSGN3b, SGN3b	SCHENGEN 3B	SCHENGEN3b	SCHENGEN 3B		5			Os05g0170300	LOC_Os05g07820.1						
26377	CIF1B	OsCIF1b, CIF1b	CS INTEGRITY FACTOR 1B	CS INTEGRITY FACTOR1b	CS INTEGRITY FACTOR 1B		11			Os11g0323860							
26378	CIF1A	OsCIF1a, CIF1a	CS INTEGRITY FACTOR 1A	CS INTEGRITY FACTOR1a	CS INTEGRITY FACTOR 1A		11			Os11g0412484	LOC_Os11g21804.2, LOC_Os11g21804.1						
26379	RRA3	OsRRA3	RICE RATOONING ABILITY 3	Rice Ratooning Ability 3			3	Q7Y0F2. 	 Character as QTL - Plant growth activity	Os03g0405900	LOC_Os03g29240.1					TO:0000096 - ratooning ability	
26380	CYP90D5	OsCYP90D5	CYTOCHROME P450 90D5	cytochrome P450 90D5	CYTOCHROME P450 90D5		5		 Tolerance and resistance - Stress tolerance	Os05g0200400	LOC_Os05g11130.1					TO:0002649 - pesticide sensitivity, TO:0000058 - herbicide sensitivity	
26381	MIR11117	Osa-miR11117, miR11117, miR-T21	MICRORNA11117	osa-miRNA 11117	_		2	Osa-miR11117 is a 23-base intergenic miRNA located on the positive strand at the end of the long arm of rice chromosome 2, between the genes LOC_Os02g35840 and LOC_Os02g35860. Target gene(s): Os04g0671200 (OsPAO4).	 Tolerance and resistance - Disease resistance,  Other						GO:0009873 - ethylene mediated signaling pathway, GO:0035195 - gene silencing by miRNA, GO:0016442 - RNA-induced silencing complex, GO:0050832 - defense response to fungus, GO:0006595 - polyamine metabolic process	TO:0000074 - blast disease	PO:0020033 - coleoptile , PO:0025034 - leaf 
26382	_	RGA2	_	Resistance gene analogue 2			6	disease resistance gene. GO:0098542: defense response to other organism.	 Tolerance and resistance - Insect resistance,  Tolerance and resistance - Disease resistance	Os04g0374000	LOC_Os04g30530.1				GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus, GO:0043531 - ADP binding	TO:0000424 - brown planthopper resistance	
26383	YLL1	OsALB3, ALB3, OsYLL1	YELLOW LEAF AND LETHAL 1	ALBINO3, ALBINO 3, yellow leaf and lethal1		yll1		Arabidopsis ALB3 homolog.	 Coloration - Chlorophyll,  Vegetative organ - Leaf	Os01g0151200	LOC_Os01g05800.1, LOC_Os01g05800.2				GO:0032977 - membrane insertase activity, GO:0016020 - membrane, GO:0009658 - chloroplast organization, GO:0009507 - chloroplast, GO:0010027 - thylakoid membrane organization	TO:0000326 - leaf color, TO:0002715 - chloroplast development trait, TO:0000495 - chlorophyll content	
26384	LNCRNA24320.6	lncRNA24320.6	LONG NON-CODING RNA 24320.6	lncRNA 24320.6			9	lncRNA24320.6 is predicted to originate from the 5'UTR and 3' UTR of LOC_Os09g08910 (ATP synthase F1 homolog), with a full length of 1226 bp. target gene(s): LOC_Os09g08920 (Os09g0263933, OsF3'H5). TO:0020093: nitrogen content. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Vegetative organ - Culm						GO:0006995 - cellular response to nitrogen starvation, GO:0042594 - response to starvation, GO:0045848 - positive regulation of nitrogen utilization	TO:0000346 - tiller number, TO:0000011 - nitrogen sensitivity, TO:0000207 - plant height, TO:0000153 - relative yield	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009049 - inflorescence 
26385	CPR5.2	OsCPR5.2	CONSTITUTIVE EXPRESSER OF PATHOGENESIS RELATED GENES 5.2	constitutive expresser of pathogenesis related genes 5.2		oscpr5.2, oscpr5.2-C1, oscpr5.2-C2, oscpr5.2-C3	2		 Vegetative organ - Culm,  Character as QTL - Yield and productivity,  Reproductive organ - panicle	Os02g0770100 	LOC_Os02g53070.1				GO:0016020 - membrane, GO:0006952 - defense response, GO:0010150 - leaf senescence, GO:0010090 - trichome morphogenesis	TO:0000207 - plant height, TO:0000449 - grain yield per plant, TO:0000590 - grain weight	
26386	GT47A-VII	OsGT47A-VII	GALACTOSYLTRANSFERASE 47A-VII		GALACTOSYLTRANSFERASE 47A-VII	osgt47a-vii	12	AtMBGT1 (MANNAN Beta-GALACTOSYLTRANSFERASE ) orthologue. OsGT47A-VII showed xyloglucan Beta- galactosyltransferase activity. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Biochemical character	Os12g0572700	LOC_Os12g38450.1				GO:0048364 - root development, GO:0016757 - transferase activity, transferring glycosyl groups, GO:0008378 - galactosyltransferase activity, GO:0005794 - Golgi apparatus, GO:0016020 - membrane, GO:0006486 - protein amino acid glycosylation	TO:0000656 - root development trait, TO:0000227 - root length	PO:0007520 - root development stage 
26387	FLOT2	OsFLOT2	FLOTILLIN 2	Flotillin2, OsFlotillin2	FLOTILLIN 2		10	Q8LNW4. GO:0044853: plasma membrane raft. GO: 0072659: protein localization to plasma membrane.		Os10g0482700	LOC_Os10g34150.1				GO:0005901 - caveola, GO:0005886 - plasma membrane		
26388	FLOT3	OsFLOT3	FLOTILLIN 3	Flotillin3, OsFlotillin3	FLOTILLIN 3		10	Q9AV57. a lipid raft component involved in CIE (clathrin-independent endocytosis). GO:0072659: protein localization to plasma membrane. GO:0044853: plasma membrane raft.		Os10g0482450	LOC_Os10g34130.1				GO:0005886 - plasma membrane, GO:0005901 - caveola, GO:0009506 - plasmodesma		
26389	AP47	OsAP47	ASPARTIC PROTEINASE 47	aspartic proteinase 47	ASPARTIC PROTEINASE 47		6		 Tolerance and resistance - Disease resistance,  Biochemical character	Os06g0118700	LOC_Os06g02780.1				GO:0004190 - aspartic-type endopeptidase activity, GO:0003677 - DNA binding, GO:0006508 - proteolysis, GO:0051607 - defense response to virus	TO:0000020 - black streak dwarf virus resistance, TO:0000148 - viral disease resistance	
26390	JAUP1	OsJAUP1	JA UPREGULATED PROTEIN 1	JA Upregulated Protein 1	JA UPREGULATED PROTEIN 1	jaup1-2, jaup1-4	7	GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:2000280: regulation of root development.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os07g0442800	LOC_Os07g26100.1				GO:0009269 - response to desiccation, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0048364 - root development, GO:0010928 - regulation of auxin mediated signaling pathway, GO:0009611 - response to wounding, GO:0009664 - plant-type cell wall organization, GO:0010311 - lateral root formation, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000507 - osmotic adjustment capacity, TO:0001012 - lateral root length, TO:0002685 - crown root number, TO:0000656 - root development trait, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000153 - relative yield, TO:0001013 - lateral root number	PO:0006036 - root epidermis , PO:0007520 - root development stage , PO:0020123 - root cap 
26391	JAUP2	OsJAUP2	JA UPREGULATED PROTEIN 2	JA Upregulated Protein 2	JA UPREGULATED PROTEIN 2		4	JAUP1 homologue.		Os04g0115200	LOC_Os04g02490.1						
26392	FYVE2	OsFYVE02, FYVE02, OsFYVE2	FYVE DOMAIN-CONTAINING PROTEIN 2	FYVE Domain-containing protein 02	FYVE DOMAIN-CONTAINING PROTEIN 2		1			Os01g0952300	LOC_Os01g72320.1				GO:0046872 - metal ion binding		
26393	FYVE4	OsFYVE04, FYVE04, OsFYVE4	FYVE DOMAIN-CONTAINING PROTEIN 4	FYVE Domain-containing protein 04	FYVE DOMAIN-CONTAINING PROTEIN 4		2			Os02g0233100	LOC_Os02g13890.1, LOC_Os02g13890.2				GO:0046872 - metal ion binding, GO:0035091 - phosphoinositide binding		
26394	FYVE11	OsFYVE11	FYVE DOMAIN-CONTAINING PROTEIN 11	FYVE Domain-containing protein 11	FYVE DOMAIN-CONTAINING PROTEIN 11		5			Os05g0384800	LOC_Os05g31920.2, LOC_Os05g31920.1				GO:0046872 - metal ion binding		
26395	FYVE12	OsFYVE12	FYVE DOMAIN-CONTAINING PROTEIN 12	FYVE Domain-containing protein 12	FYVE DOMAIN-CONTAINING PROTEIN 12		5			Os05g0545200	LOC_Os05g46740.2, LOC_Os05g46740.1				GO:0046872 - metal ion binding		
26396	FYVE13	OsFYVE13	FYVE DOMAIN-CONTAINING PROTEIN 13	FYVE Domain-containing protein 13	FYVE DOMAIN-CONTAINING PROTEIN 13		6			Os06g0552400	LOC_Os06g35910.2, LOC_Os06g35910.1				GO:0035091 - phosphoinositide binding, GO:0046872 - metal ion binding		
26397	FYVE15	OsFYVE15	FYVE DOMAIN-CONTAINING PROTEIN 15	FYVE Domain-containing protein 15	FYVE DOMAIN-CONTAINING PROTEIN 15		7			Os07g0272400	LOC_Os07g17130.1				GO:0051666 - actin cortical patch localization, GO:0051017 - actin filament bundle formation, GO:0035091 - phosphoinositide binding, GO:0046872 - metal ion binding, GO:0051015 - actin filament binding		
26398	FYVE17	OsFYVE17	FYVE DOMAIN-CONTAINING PROTEIN 17	FYVE Domain-containing protein 17	FYVE DOMAIN-CONTAINING PROTEIN 17		7			Os07g0616900	LOC_Os07g42500.1				GO:0035091 - phosphoinositide binding, GO:0046872 - metal ion binding		
26399	FYVE18	OsFYVE18	FYVE DOMAIN-CONTAINING PROTEIN 18	FYVE Domain-containing protein 18	FYVE DOMAIN-CONTAINING PROTEIN 18		7			Os07g0618600	LOC_Os07g42640.2, LOC_Os07g42640.1				GO:0043328 - protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway, GO:0006623 - protein targeting to vacuole, GO:0043130 - ubiquitin binding, GO:0032266 - phosphatidylinositol 3-phosphate binding, GO:0033565 - ESCRT-0 complex, GO:0046872 - metal ion binding		
26400	FYVE7	OsFYVE7, OsFYVE07, FYVE07	FYVE DOMAIN-CONTAINING PROTEIN 7	FYVE Domain-containing protein 07	FYVE DOMAIN-CONTAINING PROTEIN 7												
26401	PB4	Pb4, OsPB4	PANICLE BLAST RESISTANCE 4	Panicle blast resistance-4, Panicle blast 4			11	a Wall-Associated Kinase.	 Tolerance and resistance - Disease resistance	Os11g0691300	LOC_Os11g46880.1				GO:0030247 - polysaccharide binding, GO:0050832 - defense response to fungus, GO:0005524 - ATP binding, GO:0005509 - calcium ion binding, GO:0004674 - protein serine/threonine kinase activity, GO:0007166 - cell surface receptor linked signal transduction, GO:0016310 - phosphorylation, GO:0010200 - response to chitin, GO:0002238 - response to molecule of fungal origin, GO:0005886 - plasma membrane	TO:0000477 - panicle blast disease resistance, TO:0000074 - blast disease	
26402	PB3	Pb3, OsPB3	PANICLE BLAST RESISTANCE 3	Panicle blast resistance-3, Panicle blast 3		pb3-1, pb3-2, pb3-3, pb3-4, pb3-5	11	one nucleotide-binding domain and Leucine-rich Repeat (NLR) gene. GO:0098542: defense response to other organism.	 Tolerance and resistance - Disease resistance	Os11g0675200	LOC_Os11g45090.1				GO:0050832 - defense response to fungus, GO:0043531 - ADP binding	TO:0000074 - blast disease, TO:0000477 - panicle blast disease resistance, TO:0000468 - leaf blast disease resistance	
26403	FAR1	OsFAR1	FAR-RED IMPAIRED RESPONSE 1	Far-red impaired Response 1			5	the candidate gene for panicle length QTL qPL5. a phytochrome signal protein.		Os05g0447900	LOC_Os05g37540.1				GO:0005634 - nucleus, GO:0006355 - regulation of transcription, DNA-dependent, GO:0008270 - zinc ion binding		
26404	HAQ8	OsHAq8, HAq8	_				8	Activator of Hsp90 ATPase homologue 1-like family protein.  a homologous Graminae's activator of Hsp90 ATPase. 	 Character as QTL - Yield and productivity,  Tolerance and resistance - Stress tolerance	Os08g0464000	LOC_Os08g36150.1, LOC_Os08g36150.2				GO:0001671 - ATPase activator activity, GO:0009266 - response to temperature stimulus, GO:0051087 - chaperone binding, GO:0006457 - protein folding, GO:0005829 - cytosol, GO:0005634 - nucleus	TO:0000153 - relative yield, TO:0000432 - temperature response trait	
26406	_	OsRLCK9, RLCK9	_	Receptor-like Cytoplasmic Kinase 9			1		 Tolerance and resistance - Disease resistance	Os01g0113500					GO:0005524 - ATP binding, GO:0004674 - protein serine/threonine kinase activity, GO:0006952 - defense response, GO:0016020 - membrane, GO:0016310 - phosphorylation	TO:0000112 - disease resistance	
26407	_	OsRLCK17, RLCK17	_	Receptor-like Cytoplasmic Kinase 17			1		 Tolerance and resistance - Disease resistance	Os01g0116900	LOC_Os01g02710.1, LOC_Os01g02750.1				GO:0030247 - polysaccharide binding, GO:0004672 - protein kinase activity, GO:0046872 - metal ion binding, GO:0016310 - phosphorylation, GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0016020 - membrane	TO:0000112 - disease resistance	
26408	_	OsRLCK18, RLCK18	_	Receptor-like Cytoplasmic Kinase 18			1		 Tolerance and resistance - Disease resistance	Os01g0116800	LOC_Os01g02730.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0006952 - defense response, GO:0016310 - phosphorylation	TO:0000112 - disease resistance	
26409	SNRK1BETA1	OsSnRK1beta1, SnRK1beta1	SUCROSE NON-FERMENTING-1-RELATED PROTEIN KINASE-1 REGULATORY BETA 1 SUBUNIT	Sucrose non-fermenting-1-related protein kinase-1 regulatory Beta 1 subunit, SnRK1 Beta 1 subunit	SUCROSE NON-FERMENTING-1-RELATED PROTEIN KINASE-1 REGULATORY BETA 1 SUBUNIT		3		 Tolerance and resistance - Disease resistance	Os03g0319100	LOC_Os03g20340.1				GO:0007623 - circadian rhythm, GO:0050832 - defense response to fungus, GO:0009507 - chloroplast, GO:0016301 - kinase activity, GO:0016310 - phosphorylation	TO:0000460 - light intensity sensitivity, TO:0000074 - blast disease	PO:0025034 - leaf 
26410	_		_	OsEXORDIUM, EXORDIUM			2		 Tolerance and resistance - Stress tolerance	Os02g0756200	LOC_Os02g51970.1				GO:0048046 - apoplast, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait	
26411	_		_	OsEXORDIUM, EXORDIUM			6		 Tolerance and resistance - Stress tolerance	Os06g0220000	LOC_Os06g11660.1, LOC_Os06g11660.2				GO:0009266 - response to temperature stimulus, GO:0048046 - apoplast	TO:0000432 - temperature response trait	
26412	_		_	OsEXORDIUM5, EXORDIUM5, EXORDIUM 5, EXORDIUM-like 5			7		 Tolerance and resistance - Stress tolerance	Os07g0496700	LOC_Os07g31430.1				GO:0048046 - apoplast, GO:0009266 - response to temperature stimulus	TO:0000432 - temperature response trait	
26413	_	TFIIF	_	transcription initiation factor IIF			10	GO:0001096: TFIIF-class transcription factor complex binding.		Os10g0188100	LOC_Os10g10990.3, LOC_Os10g10990.2, LOC_Os10g10990.1				GO:0009651 - response to salt stress, GO:0006367 - transcription initiation from RNA polymerase II promoter, GO:0032968 - positive regulation of RNA elongation from RNA polymerase II promoter, GO:0016251 - general RNA polymerase II transcription factor activity, GO:0003677 - DNA binding, GO:0005674 - transcription factor TFIIF complex	TO:0006001 - salt tolerance	
26414	_		_				3	a short-chain dehydrogenase/reductase SDR family protein.	 Biochemical character,  Reproductive organ - Spikelet, flower, glume, awn	Os06g0695900	LOC_Os03g02460.1, LOC_Os03g02460.2				GO:0009753 - response to jasmonic acid stimulus, GO:0009737 - response to abscisic acid stimulus, GO:0016491 - oxidoreductase activity	TO:0002734 - awn presence, TO:0000072 - awn length, TO:0000615 - abscisic acid sensitivity, TO:0000172 - jasmonic acid sensitivity	PO:0009030 - carpel , PO:0009049 - inflorescence , PO:0009037 - lemma , PO:0009038 - palea 
26415	RBPK	OSRBPK, RBP-K, OsRBP-K	RNA BINDING PROTEIN K	RNA binding protein K	RNA BINDING PROTEIN K	rbp-k-1, rbp-k-2, rbp-k-3	8	TO:0000975: grain width.	 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os08g0320100	LOC_Os08g23120.1				GO:0005654 - nucleoplasm, GO:0010468 - regulation of gene expression, GO:0003723 - RNA binding	TO:0000734 - grain length, TO:0000590 - grain weight, TO:0000396 - grain yield	
26416	_	SAUR36, OsSAUR36	_	Small auxin-up RNA 36			9		 Tolerance and resistance - Stress tolerance	Os09g0546400	LOC_Os09g37446.2, LOC_Os09g37446.1				GO:0010269 - response to selenium ion	TO:0000032 - selenium sensitivity	
26417	_	SAUR32, OsSAUR32	_	Small auxin-up RNA 32			6		 Tolerance and resistance - Stress tolerance	Os06g0714366					GO:0010269 - response to selenium ion	TO:0000032 - selenium sensitivity	
26418	ZOS3-23	OsZOS3-23	ZOS3-23-C2H2 ZINC FINGER PROTEIN	C2H2 ZINC FINGER PROTEIN ZOS3-23	ZOS3-23-C2H2 ZINC FINGER PROTEIN		3			Os03g0831900	LOC_Os03g61640.1				GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0008270 - zinc ion binding, GO:0003676 - nucleic acid binding, GO:0005681 - spliceosomal complex, GO:0046540 - U4/U6 x U5 tri-snRNP complex		
26419	GDCP	OsGDCP	G-PATCH DOMAIN CONTAINING PROTEIN 		G-PATCH DOMAIN CONTAINING PROTEIN 		1			Os01g0526100	LOC_Os01g34190.1				GO:0009507 - chloroplast, GO:0003723 - RNA binding, GO:0000380 - alternative nuclear mRNA splicing, via spliceosome, GO:0045292 - nuclear mRNA cis splicing, via spliceosome, GO:0043484 - regulation of RNA splicing, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0071011 - precatalytic spliceosome		
26420	ACT1	OsACT1	_				8	Q6Z256.		Os08g0369300	LOC_Os08g28190.1				GO:0005524 - ATP binding, GO:0005885 - Arp2/3 protein complex, GO:0005737 - cytoplasm, GO:0051015 - actin filament binding, GO:0034314 - Arp2/3 complex-mediated actin nucleation		
26421	EXO70H1B	OsEXO70H1b, EXO70H1b	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H1B	exocyst subunit EXO70 family protein H1b	EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H1B		11	GO:1990170: stress response to cadmium ion.	 Tolerance and resistance - Stress tolerance	Os11g0650700 	LOC_Os11g43049.1				GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding, GO:0046686 - response to cadmium ion, GO:0000145 - exocyst, GO:0006887 - exocytosis, GO:0015031 - protein transport		
26422	CALS8	CalS8, OsCalS8	CALLOSE SYNTHASE 8	callose synthase 8	CALLOSE SYNTHASE 8		2	GO:0071555: cell wall organization.	 Tolerance and resistance - Disease resistance,  Biochemical character	Os02g0247000	LOC_Os02g14900.1				GO:0052542 - callose deposition during defense response, GO:0051607 - defense response to virus, GO:0005886 - plasma membrane, GO:0046527 - glucosyltransferase activity	TO:0000148 - viral disease resistance	
26423	BG1	OsBG1	BETA-1,3-GLUCANASE 1	beta-1, 3-glucanase 1	BETA-1,3-GLUCANASE 1		7		 Biochemical character	Os07g0510200	LOC_Os07g32600.2, LOC_Os07g32600.1				GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0016020 - membrane, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0005975 - carbohydrate metabolic process		
26424	BG5	OsBG5	BETA-1,3-GLUCANASE 5	beta-1, 3-glucanase 5	BETA-1,3-GLUCANASE 5		9		 Biochemical character	Os09g0272300	LOC_Os09g09980.1				GO:0016020 - membrane, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity		
26425	BG7	OsBG7	BETA-1,3-GLUCANASE 7	beta-1, 3-glucanase 7	BETA-1,3-GLUCANASE 7		8		 Biochemical character	Os08g0244500	LOC_Os08g14700.1				GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds, GO:0005975 - carbohydrate metabolic process		
26426	BG8	OsBG8	BETA-1,3-GLUCANASE 8	beta-1, 3-glucanase 8	BETA-1,3-GLUCANASE 8		6		 Biochemical character	Os06g0590600	LOC_Os06g39060.1				GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity, GO:0005975 - carbohydrate metabolic process, GO:0016020 - membrane		
26427	BG11	OsBG11	BETA-1,3-GLUCANASE 11	beta-1, 3-glucanase 11	BETA-1,3-GLUCANASE 11		6		 Biochemical character	Os06g0531000	LOC_Os06g34020.1				GO:0005975 - carbohydrate metabolic process, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
26428	BG13	OsBG13	BETA-1,3-GLUCANASE 13	beta-1, 3-glucanase 13	BETA-1,3-GLUCANASE 13		7		 Biochemical character	Os07g0538000	LOC_Os07g35350.3, LOC_Os07g35350.1, LOC_Os07g35350.2				GO:0005975 - carbohydrate metabolic process, GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity		
26429	BG14	OsBG14	BETA-1,3-GLUCANASE 14	beta-1, 3-glucanase 14	BETA-1,3-GLUCANASE 14		6		 Biochemical character	Os06g0607000	LOC_Os06g40490.1				GO:0005975 - carbohydrate metabolic process, GO:0016020 - membrane, GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds		
26430	BPH46	Bph46, OsBPH46	BROWN PLANTHOPPER RESISTANCE 46				12	A novel resistance locus linked to markers 12M16.983 and 12M19.042 was identified, mapped to chromosome 12 in CL45, and designated Bph46. It was finely mapped to an interval of 480 kb and Gene 3 may be the resistance gene (Li et al. 2024). GO:0098542: defense response to other organism.	 Tolerance and resistance - Insect resistance	Os12g0489800	LOC_Os12g30590.1				GO:0043531 - ADP binding, GO:0002213 - defense response to insect, GO:0050832 - defense response to fungus	TO:0000424 - brown planthopper resistance	
26431	ZOS1-01	OsZOS1-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-01	zinc-finger protein TFIIIA class of Oryza sativa 1-01, ZPT of Oryza sativa 1-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-01		1				LOC_Os01g01770.1						
26432	ZOS1-03	OsZOS1-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-03	zinc-finger protein TFIIIA class of Oryza sativa 1-03, ZPT of Oryza sativa 1-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-03		1			Os01g0132766	LOC_Os01g04120.1						
26433	ZOS1-05	OsZOS1-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-05	zinc-finger protein TFIIIA class of Oryza sativa 1-05, ZPT of Oryza sativa 1-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-05		1			Os01g0242200	LOC_Os01g14010.1						
26434	ZOS1-06	OsZOS1-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-06	zinc-finger protein TFIIIA class of Oryza sativa 1-06, ZPT of Oryza sativa 1-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-06		1			Os01g0251200	LOC_Os01g14840.1						PO:0001170 - seed development stage 
26435	ZOS1-07	OsZOS1-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-07	zinc-finger protein TFIIIA class of Oryza sativa 1-07, ZPT of Oryza sativa 1-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-07		1			Os01g0380200	LOC_Os01g28230.1						
26436	ZOS1-08	OsZOS1-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-08	zinc-finger protein TFIIIA class of Oryza sativa 1-08, ZPT of Oryza sativa 1-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-08		1			Os01g0512700	LOC_Os01g32920.1						
26437	ZOS1-09	OsZOS1-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-09	zinc-finger protein TFIIIA class of Oryza sativa 1-09, ZPT of Oryza sativa 1-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-09		1		 Tolerance and resistance - Stress tolerance	Os01g0534800	LOC_Os01g35040.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26438	ZOS1-10	OsZOS1-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-10	zinc-finger protein TFIIIA class of Oryza sativa 1-10, ZPT of Oryza sativa 1-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-10		1		 Tolerance and resistance - Stress tolerance	Os01g0572300	LOC_Os01g39110.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26439	ZOS1-11	OsZOS1-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-11	zinc-finger protein TFIIIA class of Oryza sativa 1-11, ZPT of Oryza sativa 1-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-11		1		 Tolerance and resistance - Stress tolerance	Os01g0583200	LOC_Os01g40110.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
26440	ZOS1-12	OsZOS1-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-12	zinc-finger protein TFIIIA class of Oryza sativa 1-12, ZPT of Oryza sativa 1-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-12		1			Os01g0785900	LOC_Os01g57650.1						PO:0001083 - inflorescence development stage 
26441	ZOS1-13	OsZOS1-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-13	zinc-finger protein TFIIIA class of Oryza sativa 1-13, ZPT of Oryza sativa 1-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-13		1				LOC_Os01g59450.1						
26442	ZOS1-14	OsZOS1-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-14	zinc-finger protein TFIIIA class of Oryza sativa 1-14, ZPT of Oryza sativa 1-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-14		1		 Tolerance and resistance - Stress tolerance	Os01g0838600	LOC_Os01g62130.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
26443	ZOS1-15	OsZOS1-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-15	zinc-finger protein TFIIIA class of Oryza sativa 1-15, ZPT of Oryza sativa 1-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-15		1		 Tolerance and resistance - Stress tolerance	Os01g0839100	LOC_Os01g62190.1				GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001170 - seed development stage 
26444	ZOS1-16	OsZOS1-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-16	zinc-finger protein TFIIIA class of Oryza sativa 1-16, ZPT of Oryza sativa 1-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-16		1		 Tolerance and resistance - Stress tolerance	Os01g0842200	LOC_Os01g62460.2, LOC_Os01g62460.1, LOC_Os01g62460.3				GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
26445	ZOS1-17	OsZOS1-17	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-17	zinc-finger protein TFIIIA class of Oryza sativa 1-17, ZPT of Oryza sativa 1-17	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-17		1		 Tolerance and resistance - Stress tolerance	Os01g0859100	LOC_Os01g63980.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
26446	ZOS1-18	OsZOS1-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-18	zinc-finger protein TFIIIA class of Oryza sativa 1-18, ZPT of Oryza sativa 1-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-18		1	Q943I6.	 Tolerance and resistance - Stress tolerance	Os01g0871200	LOC_Os01g65080.3, LOC_Os01g65080.4, LOC_Os01g65080.2, LOC_Os01g65080.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26447	ZOS1-19	OsZOS1-19	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-19	zinc-finger protein TFIIIA class of Oryza sativa 1-19, ZPT of Oryza sativa 1-19	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-19		1			Os01g0889101	LOC_Os01g66570.1						
26448	ZOS1-20	OsZOS1-20	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-20	zinc-finger protein TFIIIA class of Oryza sativa 1-20, ZPT of Oryza sativa 1-20	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-20		1			Os01g0907400	LOC_Os01g67970.1						
26449	ZOS1-21	OsZOS1-21	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-21	zinc-finger protein TFIIIA class of Oryza sativa 1-21, ZPT of Oryza sativa 1-21	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-21		1		 Tolerance and resistance - Stress tolerance	Os01g0909100	LOC_Os01g68104.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage 
26450	ZOS1-22	OsZOS1-22	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-22	zinc-finger protein TFIIIA class of Oryza sativa 1-22, ZPT of Oryza sativa 1-22	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-22		1			Os01g0909500	LOC_Os01g68160.3, LOC_Os01g68160.4, LOC_Os01g68160.5, LOC_Os01g68160.1, LOC_Os01g68160.2						
26451	ZOS1-23	OsZOS1-23	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-23	zinc-finger protein TFIIIA class of Oryza sativa 1-23, ZPT of Oryza sativa 1-23	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 1-23		1			Os01g0935000	LOC_Os01g70870.1						
26452	ZOS2-01	OsZOS2-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-01	zinc-finger protein TFIIIA class of Oryza sativa 1-01, ZPT of Oryza sativa 2-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-01		2			Os02g0100900	LOC_Os02g01090.1						
26453	ZOS2-02	OsZOS2-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-02	zinc-finger protein TFIIIA class of Oryza sativa 1-02, ZPT of Oryza sativa 2-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-02		2		 Tolerance and resistance - Stress tolerance	Os02g0116000	LOC_Os02g02424.3, LOC_Os02g02424.1, LOC_Os02g02424.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26454	ZOS2-03	OsZOS2-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-03	zinc-finger protein TFIIIA class of Oryza sativa 1-03, ZPT of Oryza sativa 2-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-03		2			Os02g0149600	LOC_Os02g05610.1						PO:0001083 - inflorescence development stage 
26455	ZOS2-04	OsZOS2-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-04	zinc-finger protein TFIIIA class of Oryza sativa 1-04, ZPT of Oryza sativa 2-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-04		2			Os02g0182300	LOC_Os02g08510.1						
26456	ZOS2-05	OsZOS2-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-05	zinc-finger protein TFIIIA class of Oryza sativa 1-05, ZPT of Oryza sativa 2-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-05		2		 Tolerance and resistance - Stress tolerance	Os02g0196100	LOC_Os02g10240.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
26457	ZOS2-06	OsZOS2-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-06	zinc-finger protein TFIIIA class of Oryza sativa 1-06, ZPT of Oryza sativa 2-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-06		2			Os02g0293900	LOC_Os02g19180.1						
26458	ZOS2-07	OsZOS2-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-07	zinc-finger protein TFIIIA class of Oryza sativa 1-07, ZPT of Oryza sativa 2-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-07		2			Os02g0504500	LOC_Os02g30180.3, LOC_Os02g30180.2, LOC_Os02g30180.1						
26459	ZOS2-08	OsZOS2-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-08	zinc-finger protein TFIIIA class of Oryza sativa 1-08, ZPT of Oryza sativa 2-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-08		2			Os02g0518500	LOC_Os02g31890.1						
26460	ZOS2-09	OsZOS2-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-09	zinc-finger protein TFIIIA class of Oryza sativa 1-09, ZPT of Oryza sativa 2-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-09		2			Os02g0551900	LOC_Os02g34680.1						
26461	ZOS2-10	OsZOS2-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-10	zinc-finger protein TFIIIA class of Oryza sativa 1-10, ZPT of Oryza sativa 2-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-10		2			Os02g0562200	LOC_Os02g35460.1						
26462	ZOS2-11	OsZOS2-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-11	zinc-finger protein TFIIIA class of Oryza sativa 1-11, ZPT of Oryza sativa 2-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-11		2		 Tolerance and resistance - Stress tolerance	Os02g0572900	LOC_Os02g36360.2, LOC_Os02g36360.1, LOC_Os02g36360.3				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26463	ZOS2-12	OsZOS2-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-12	zinc-finger protein TFIIIA class of Oryza sativa 1-12, ZPT of Oryza sativa 2-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-12		2			Os02g0608700	LOC_Os02g39580.1						
26464	ZOS2-13	OsZOS2-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-13	zinc-finger protein TFIIIA class of Oryza sativa 1-13, ZPT of Oryza sativa 2-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-13		2			Os02g0659100	LOC_Os02g44120.1						PO:0001083 - inflorescence development stage 
26465	ZOS2-14	OsZOS2-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-14	zinc-finger protein TFIIIA class of Oryza sativa 1-14, ZPT of Oryza sativa 2-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-14		2		 Tolerance and resistance - Stress tolerance	Os02g0659500	LOC_Os02g44130.1				GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
26466	ZOS2-15	OsZOS2-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-15	zinc-finger protein TFIIIA class of Oryza sativa 1-15, ZPT of Oryza sativa 2-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-15		2			Os02g0672100	LOC_Os02g45054.3, LOC_Os02g45054.4, LOC_Os02g45054.2, LOC_Os02g45054.1						
26467	ZOS2-16	OsZOS2-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-16	zinc-finger protein TFIIIA class of Oryza sativa 1-16, ZPT of Oryza sativa 2-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-16		2			Os02g0709000	LOC_Os02g47920.1						
26468	ZOS2-17	OsZOS2-17, OsZF8, ZF8	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-17	zinc-finger protein TFIIIA class of Oryza sativa 1-17, ZPT of Oryza sativa 2-17, zinc finger protein 8	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-17	OsZF8-ko12, OsZF8-ko29	2	GO:1900150: regulation of defense response to fungus. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os02g0775600	LOC_Os02g53530.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0009414 - response to water deprivation, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0009005 - root , PO:0020104 - leaf sheath , PO:0025034 - leaf , PO:0009047 - stem , PO:0009049 - inflorescence 
26469	ZOS2-18	OsZOS2-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-18	zinc-finger protein TFIIIA class of Oryza sativa 1-18, ZPT of Oryza sativa 2-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-18		2				LOC_Os02g57550.1						
26470	ZOS2-19	OsZOS2-19	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-19	zinc-finger protein TFIIIA class of Oryza sativa 1-19, ZPT of Oryza sativa 2-19	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 2-19		2			Os02g0823900	LOC_Os02g57790.1						
26471	ZOS3-01	OsZOS3-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-01	zinc-finger protein TFIIIA class of Oryza sativa 3-01, ZPT of Oryza sativa 3-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-01		3			Os03g0148800	LOC_Os03g05480.1						PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
26472	ZOS3-02	OsZOS3-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-02	zinc-finger protein TFIIIA class of Oryza sativa 3-02, ZPT of Oryza sativa 3-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-02		3			Os03g0148900	LOC_Os03g05490.1						
26473	ZOS3-03	OsZOS3-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-03	zinc-finger protein TFIIIA class of Oryza sativa 3-03, ZPT of Oryza sativa 3-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-03		3			Os03g0151300	LOC_Os03g05680.1, LOC_Os03g05690.1						PO:0001083 - inflorescence development stage 
26474	ZOS3-04	OsZOS3-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-04	zinc-finger protein TFIIIA class of Oryza sativa 3-04, ZPT of Oryza sativa 3-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-04		3		 Tolerance and resistance - Stress tolerance	Os03g0197800	LOC_Os03g10140.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage 
26475	ZOS3-05	OsZOS3-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-05	zinc-finger protein TFIIIA class of Oryza sativa 3-05, ZPT of Oryza sativa 3-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-05		3			Os03g0216000	LOC_Os03g11680.1						
26476	ZOS3-07	OsZOS3-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-07	zinc-finger protein TFIIIA class of Oryza sativa 3-07, ZPT of Oryza sativa 3-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-07		3			Os03g0239300	LOC_Os03g13600.2, LOC_Os03g13600.1						
26477	ZOS3-08	OsZOS3-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-08	zinc-finger protein TFIIIA class of Oryza sativa 3-08, ZPT of Oryza sativa 3-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-08		3			Os03g0264600	LOC_Os03g15790.1						
26478	ZOS3-09	OsZOS3-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-09	zinc-finger protein TFIIIA class of Oryza sativa 3-09, ZPT of Oryza sativa 3-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-09		3		 Tolerance and resistance - Stress tolerance	Os03g0279700	LOC_Os03g17150.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
26479	ZOS3-10	OsZOS3-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-10	zinc-finger protein TFIIIA class of Oryza sativa 3-10, ZPT of Oryza sativa 3-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-10		3			Os03g0425900	LOC_Os03g31240.1						PO:0001083 - inflorescence development stage 
26480	ZOS3-11	OsZOS3-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-11	zinc-finger protein TFIIIA class of Oryza sativa 3-11, ZPT of Oryza sativa 3-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-11		3		 Tolerance and resistance - Stress tolerance	Os03g0437100	LOC_Os03g32220.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26481	ZOS3-12	OsZOS3-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-12	zinc-finger protein TFIIIA class of Oryza sativa 3-12, ZPT of Oryza sativa 3-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-12		3		 Tolerance and resistance - Stress tolerance	Os03g0437200	LOC_Os03g32230.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
26482	ZOS3-13	OsZOS3-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-13	zinc-finger protein TFIIIA class of Oryza sativa 3-13, ZPT of Oryza sativa 3-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-13		3				LOC_Os03g40710.1						
26483	ZOS3-14	OsZOS3-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-14	zinc-finger protein TFIIIA class of Oryza sativa 3-14, ZPT of Oryza sativa 3-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-14		3			Os03g0607700	LOC_Os03g41110.1						
26484	ZOS3-15	OsZOS3-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-15	zinc-finger protein TFIIIA class of Oryza sativa 3-15, ZPT of Oryza sativa 3-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-15		3		 Tolerance and resistance - Stress tolerance	Os03g0610400	LOC_Os03g41390.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
26485	ZOS3-16	OsZOS3-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-16	zinc-finger protein TFIIIA class of Oryza sativa 3-16, ZPT of Oryza sativa 3-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-16		3			Os03g0698300	LOC_Os03g49132.1						
26486	ZOS3-17	OsZOS3-17	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-17	zinc-finger protein TFIIIA class of Oryza sativa 3-17, ZPT of Oryza sativa 3-17	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-17		3			Os03g0717600	LOC_Os03g50850.1, LOC_Os03g50850.2						
26487	ZOS3-18	OsZOS3-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-18	zinc-finger protein TFIIIA class of Oryza sativa 3-18, ZPT of Oryza sativa 3-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-18		3		 Tolerance and resistance - Stress tolerance	Os03g0764100	LOC_Os03g55540.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
26488	ZOS3-19	OsZOS3-19	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-19	zinc-finger protein TFIIIA class of Oryza sativa 3-19, ZPT of Oryza sativa 3-19	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-19		3		 Tolerance and resistance - Stress tolerance	Os03g0786400	LOC_Os03g57240.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26489	ZOS3-20	OsZOS3-20	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-20	zinc-finger protein TFIIIA class of Oryza sativa 3-20, ZPT of Oryza sativa 3-20	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-20		3		 Tolerance and resistance - Stress tolerance		LOC_Os03g60540.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26490	ZOS3-21	OsZOS3-21	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-21	zinc-finger protein TFIIIA class of Oryza sativa 3-21, ZPT of Oryza sativa 3-21	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-21		3		 Tolerance and resistance - Stress tolerance	Os03g0820300	LOC_Os03g60560.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0001170 - seed development stage 
26491	ZOS3-22	OsZOS3-22	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-22	zinc-finger protein TFIIIA class of Oryza sativa 3-22, ZPT of Oryza sativa 3-22	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-22		3		 Tolerance and resistance - Stress tolerance	Os03g0820400	LOC_Os03g60570.1				GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26492	ZOS3-23	OsZOS3-23	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-23	zinc-finger protein TFIIIA class of Oryza sativa 3-23, ZPT of Oryza sativa 3-23	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-23		3			Os03g0831900	LOC_Os03g61640.1						
26493	ZOS3-24	OsZOS3-24	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-24	zinc-finger protein TFIIIA class of Oryza sativa 3-24, ZPT of Oryza sativa 3-24	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 3-24		3			Os03g0838800	LOC_Os03g62230.1						
26494	ZOS4-01	OsZOS4-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-01	zinc-finger protein TFIIIA class of Oryza sativa 4-01, ZPT of Oryza sativa 4-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-01		4			Os04g0115500	LOC_Os04g02510.1						
26495	ZOS4-03	OsZOS4-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-03	zinc-finger protein TFIIIA class of Oryza sativa 4-03, ZPT of Oryza sativa 4-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-03		4			Os04g0162500	LOC_Os04g08060.1						
26496	ZOS4-04	OsZOS4-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-04	zinc-finger protein TFIIIA class of Oryza sativa 4-04, ZPT of Oryza sativa 4-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-04		4			Os04g0165200	LOC_Os04g08290.1						
26497	ZOS4-05	OsZOS4-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-05	zinc-finger protein TFIIIA class of Oryza sativa 4-05, ZPT of Oryza sativa 4-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-05		4			Os04g0168100	LOC_Os04g08600.1						
26498	ZOS4-06	OsZOS4-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-06	zinc-finger protein TFIIIA class of Oryza sativa 4-06, ZPT of Oryza sativa 4-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-06		4			Os04g0444100	LOC_Os04g36650.1						
26499	ZOS4-07	OsZOS4-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-07	zinc-finger protein TFIIIA class of Oryza sativa 4-07, ZPT of Oryza sativa 4-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-07		4			Os04g0464600	LOC_Os04g39050.1						
26500	ZOS4-08	OsZOS4-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-08	zinc-finger protein TFIIIA class of Oryza sativa 4-08, ZPT of Oryza sativa 4-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-08		4			Os04g0471000	LOC_Os04g39520.1						
26501	ZOS4-09	OsZOS4-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-09	zinc-finger protein TFIIIA class of Oryza sativa 4-09, ZPT of Oryza sativa 4-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-09		4			Os04g0552400	LOC_Os04g46670.1						
26502	ZOS4-10	OsZOS4-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-10	zinc-finger protein TFIIIA class of Oryza sativa 4-10, ZPT of Oryza sativa 4-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-10		4			Os04g0552700	LOC_Os04g46680.1						PO:0001083 - inflorescence development stage , PO:0001170 - seed development stage 
26504	ZOS4-12	OsZOS4-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-12	zinc-finger protein TFIIIA class of Oryza sativa 4-12, ZPT of Oryza sativa 4-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-12		4	located in qLWD4-2 on chromosome 4. GO:0036503: ERAD pathway.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os04g0574600	LOC_Os04g48520.1				GO:0004519 - endonuclease activity, GO:0009414 - response to water deprivation, GO:0005737 - cytoplasm, GO:0046872 - metal ion binding	TO:0000276 - drought tolerance	
26505	ZOS4-13	OsZOS4-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-13	zinc-finger protein TFIIIA class of Oryza sativa 4-13, ZPT of Oryza sativa 4-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-13		4				LOC_Os04g50070.1						
26506	ZOS4-14	OsZOS4-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-14	zinc-finger protein TFIIIA class of Oryza sativa 4-14, ZPT of Oryza sativa 4-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 4-14		4			Os04g0690100	LOC_Os04g59380.1						PO:0001083 - inflorescence development stage 
26507	ZOS5-01	OsZOS5-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-01	zinc-finger protein TFIIIA class of Oryza sativa 5-01, ZPT of Oryza sativa 5-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-01		5			Os05g0106000	LOC_Os05g01550.1						PO:0001083 - inflorescence development stage 
26508	ZOS5-02	OsZOS5-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-02	zinc-finger protein TFIIIA class of Oryza sativa 5-02, ZPT of Oryza sativa 5-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-02		5		 Tolerance and resistance - Stress tolerance	Os05g0114400	LOC_Os05g02390.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26509	ZOS5-03	OsZOS5-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-03	zinc-finger protein TFIIIA class of Oryza sativa 5-03, ZPT of Oryza sativa 5-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-03		5			Os05g0121400	LOC_Os05g03020.1						
26510	ZOS5-04	OsZOS5-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-04	zinc-finger protein TFIIIA class of Oryza sativa 5-04, ZPT of Oryza sativa 5-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-04		5				LOC_Os05g05970.1						
26511	ZOS5-05	OsZOS5-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-05	zinc-finger protein TFIIIA class of Oryza sativa 5-05, ZPT of Oryza sativa 5-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-05		5			Os05g0229900	LOC_Os05g14130.1						
26512	ZOS5-06	OsZOS5-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-06	zinc-finger protein TFIIIA class of Oryza sativa 5-06, ZPT of Oryza sativa 5-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-06		5		 Tolerance and resistance - Stress tolerance	Os05g0279400	LOC_Os05g19970.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0001170 - seed development stage 
26513	ZOS5-07	OsZOS5-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-07	zinc-finger protein TFIIIA class of Oryza sativa 5-07, ZPT of Oryza sativa 5-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-07		5		 Tolerance and resistance - Stress tolerance	Os05g0286100	LOC_Os05g20930.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
26514	ZOS5-08	OsZOS5-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-08	zinc-finger protein TFIIIA class of Oryza sativa 5-08, ZPT of Oryza sativa 5-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-08		5		 Tolerance and resistance - Stress tolerance	Os05g0444200	LOC_Os05g37190.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
26515	ZOS5-09	OsZOS5-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-09	zinc-finger protein TFIIIA class of Oryza sativa 5-09, ZPT of Oryza sativa 5-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-09		5			Os05g0460900	LOC_Os05g38600.1						PO:0001170 - seed development stage 
26516	ZOS5-10	OsZOS5-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-10	zinc-finger protein TFIIIA class of Oryza sativa 5-10, ZPT of Oryza sativa 5-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-10		5			Os05g0461200	LOC_Os05g38620.1						
26517	ZOS5-11	OsZOS5-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-11	zinc-finger protein TFIIIA class of Oryza sativa 5-11, ZPT of Oryza sativa 5-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 5-11		5			Os05g0495100	LOC_Os05g41530.1						PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
26518	ZOS6-01	OsZOS6-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-01	zinc-finger protein TFIIIA class of Oryza sativa 6-01, ZPT of Oryza sativa 6-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-01		6			Os06g0166200	LOC_Os06g07020.1						
26519	ZOS6-02	OsZOS6-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-02	zinc-finger protein TFIIIA class of Oryza sativa 6-02, ZPT of Oryza sativa 6-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-02		6				LOC_Os06g10470.1						
26520	ZOS6-03	OsZOS6-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-03	zinc-finger protein TFIIIA class of Oryza sativa 6-03, ZPT of Oryza sativa 6-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-03		6			Os06g0304200	LOC_Os06g20020.1						
26521	ZOS6-04	OsZOS6-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-04	zinc-finger protein TFIIIA class of Oryza sativa 6-04, ZPT of Oryza sativa 6-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-04		6			Os06g0329800	LOC_Os06g22420.1						PO:0001170 - seed development stage 
26522	ZOS6-05	OsZOS6-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-05	zinc-finger protein TFIIIA class of Oryza sativa 6-05, ZPT of Oryza sativa 6-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-05		6			Os06g0612300	LOC_Os06g40960.1						PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
26523	ZOS6-06	OsZOS6-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-06	zinc-finger protein TFIIIA class of Oryza sativa 6-06, ZPT of Oryza sativa 6-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-06		6			Os06g0651300	LOC_Os06g44200.1, LOC_Os06g44200.2, LOC_Os06g44200.3						
26524	ZOS6-07	OsZOS6-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-07	zinc-finger protein TFIIIA class of Oryza sativa 6-07, ZPT of Oryza sativa 6-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-07		6		 Tolerance and resistance - Stress tolerance	Os06g0683000	LOC_Os06g46910.1, LOC_Os06g46910.2				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
26525	ZOS6-08	OsZOS6-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-08	zinc-finger protein TFIIIA class of Oryza sativa 6-08, ZPT of Oryza sativa 6-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-08		6			Os06g0693500	LOC_Os06g47840.1						
26526	ZOS6-10	OsZOS6-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-10	zinc-finger protein TFIIIA class of Oryza sativa 6-10, ZPT of Oryza sativa 6-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-10		6		 Tolerance and resistance - Stress tolerance	Os06g0708600	LOC_Os06g49490.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26527	ZOS6-11	OsZOS6-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-11	zinc-finger protein TFIIIA class of Oryza sativa 6-11, ZPT of Oryza sativa 6-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-11		6			Os06g0727000	LOC_Os06g51140.1						
26528	ZOS7-01	OsZOS7-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-01	zinc-finger protein TFIIIA class of Oryza sativa 7-01, ZPT of Oryza sativa 7-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-01		7		 Tolerance and resistance - Stress tolerance	Os07g0101800	LOC_Os07g01180.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	
26529	ZOS7-03	OsZOS7-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-03	zinc-finger protein TFIIIA class of Oryza sativa 7-03, ZPT of Oryza sativa 7-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-03		7			Os07g0209600	LOC_Os07g10870.1						
26530	ZOS7-04	OsZOS7-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-04	zinc-finger protein TFIIIA class of Oryza sativa 7-04, ZPT of Oryza sativa 7-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-04		7			Os07g0417400	LOC_Os07g23450.1						
26531	ZOS7-06	OsZOS7-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-06	zinc-finger protein TFIIIA class of Oryza sativa 7-06, ZPT of Oryza sativa 7-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-06		7		 Tolerance and resistance - Stress tolerance	Os07g0581366	LOC_Os07g39310.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage 
26532	ZOS7-07	OsZOS7-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-07	zinc-finger protein TFIIIA class of Oryza sativa 7-07, ZPT of Oryza sativa 7-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-07		7			Os07g0588600	LOC_Os07g39960.1						
26533	ZOS7-09	OsZOS7-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-09	zinc-finger protein TFIIIA class of Oryza sativa 7-09, ZPT of Oryza sativa 7-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-09		7			Os07g0590100	LOC_Os07g40080.1						
26534	ZOS7-10	OsZOS7-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-10	zinc-finger protein TFIIIA class of Oryza sativa 7-10, ZPT of Oryza sativa 7-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-10		7		 Tolerance and resistance - Stress tolerance	Os07g0593000	LOC_Os07g40300.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	
26535	ZOS7-11	OsZOS7-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-11	zinc-finger protein TFIIIA class of Oryza sativa 7-11, ZPT of Oryza sativa 7-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-11		7			Os07g0598800	LOC_Os07g40780.1						
26536	ZOS7-12	OsZOS7-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-12	zinc-finger protein TFIIIA class of Oryza sativa 7-12, ZPT of Oryza sativa 7-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-12		7			Os07g0600900	LOC_Os07g40950.1						
26537	ZOS7-13	OsZOS7-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-13	zinc-finger protein TFIIIA class of Oryza sativa 7-13, ZPT of Oryza sativa 7-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 7-13		7	A3BMN9.	 Tolerance and resistance - Stress tolerance	Os07g0640000	LOC_Os07g44640.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26538	ZOS8-01	OsZOS8-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-01	zinc-finger protein TFIIIA class of Oryza sativa 8-01, ZPT of Oryza sativa 8-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-01		8			Os08g0270900	LOC_Os08g16940.1						
26539	ZOS8-02	OsZOS8-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-02	zinc-finger protein TFIIIA class of Oryza sativa 8-02, ZPT of Oryza sativa 8-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-02		8				LOC_Os08g17640.1						
26540	ZOS8-03	OsZOS8-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-03	zinc-finger protein TFIIIA class of Oryza sativa 8-03, ZPT of Oryza sativa 8-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-03		8				LOC_Os08g19890.1						
26541	ZOS8-04	OsZOS8-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-04	zinc-finger protein TFIIIA class of Oryza sativa 8-04, ZPT of Oryza sativa 8-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-04		8			Os08g0300366	LOC_Os08g20580.1						
26542	ZOS8-05	OsZOS8-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-05	zinc-finger protein TFIIIA class of Oryza sativa 8-05, ZPT of Oryza sativa 8-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-05		8			Os08g0441900	LOC_Os08g34310.1						
26543	ZOS8-06	OsZOS8-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-06	zinc-finger protein TFIIIA class of Oryza sativa 8-06, ZPT of Oryza sativa 8-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-06		8		 Tolerance and resistance - Stress tolerance	Os08g0463500	LOC_Os08g36110.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26544	ZOS8-07	OsZOS8-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-07	zinc-finger protein TFIIIA class of Oryza sativa 8-07, ZPT of Oryza sativa 8-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-07		8			Os08g0467100	LOC_Os08g36390.1						PO:0001083 - inflorescence development stage 
26545	ZOS8-08	OsZOS8-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-08	zinc-finger protein TFIIIA class of Oryza sativa 8-08, ZPT of Oryza sativa 8-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-08		8			Os08g0485600	LOC_Os08g37904.6, LOC_Os08g37904.1, LOC_Os08g37904.2, LOC_Os08g37904.3, LOC_Os08g37904.4, LOC_Os08g37904.5						PO:0001083 - inflorescence development stage 
26546	ZOS8-09	OsZOS8-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-09	zinc-finger protein TFIIIA class of Oryza sativa 8-09, ZPT of Oryza sativa 8-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-09		8		 Tolerance and resistance - Stress tolerance	Os08g0485700	LOC_Os08g37920.1, LOC_Os08g37920.2				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	PO:0001170 - seed development stage , PO:0001083 - inflorescence development stage 
26547	ZOS8-10	OsZOS8-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-10	zinc-finger protein TFIIIA class of Oryza sativa 8-10, ZPT of Oryza sativa 8-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-10		8			Os08g0504000	LOC_Os08g39390.1						
26548	ZOS8-11	OsZOS8-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-11	zinc-finger protein TFIIIA class of Oryza sativa 8-11, ZPT of Oryza sativa 8-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-11		8			Os08g0517300	LOC_Os08g40560.2, LOC_Os08g40560.1						
26549	ZOS8-12	OsZOS8-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-12	zinc-finger protein TFIIIA class of Oryza sativa 8-12, ZPT of Oryza sativa 8-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-12		8			Os08g0554400	LOC_Os08g44050.3, LOC_Os08g44050.1, LOC_Os08g44050.2, LOC_Os08g44050.4						
26550	ZOS8-13	OsZOS8-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-13	zinc-finger protein TFIIIA class of Oryza sativa 8-13, ZPT of Oryza sativa 8-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-13		8		 Tolerance and resistance - Stress tolerance	Os08g0555700	LOC_Os08g44190.1				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0001170 - seed development stage 
26551	ZOS8-14	OsZOS8-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-14	zinc-finger protein TFIIIA class of Oryza sativa 8-14, ZPT of Oryza sativa 8-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 8-14		8		 Tolerance and resistance - Stress tolerance	Os08g0562300	LOC_Os08g44830.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26552	ZOS9-01	OsZOS9-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-01	zinc-finger protein TFIIIA class of Oryza sativa 9-01, ZPT of Oryza sativa 9-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-01		9			Os09g0122000	LOC_Os09g03500.1						
26553	ZOS9-02	OsZOS9-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-02	zinc-finger protein TFIIIA class of Oryza sativa 9-02, ZPT of Oryza sativa 9-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-02		9			Os09g0282100/Os09g0282300	LOC_Os09g10980.1						
26554	ZOS9-03	OsZOS9-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-03	zinc-finger protein TFIIIA class of Oryza sativa 9-03, ZPT of Oryza sativa 9-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-03		9			Os09g0306800	LOC_Os09g13630.1						
26555	TML	OsZOS9-04, OsTML, OsWIP6, WIP6, ZOS9-04	TOO MANY LATERALS	zinc-finger protein TFIIIA class of Oryza sativa 9-04, ZPT of Oryza sativa 9-04, WIP DOMAIN PROTEIN 6	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-04	tml, Ostml, Ostml_m1, Ostml_m2, Ostml_m3.1, Ostml_m3.3, Ostml_m4	9	TO:0000820: leaf vein morphology trait. TO:0000821: leaf vein size.	 Vegetative organ - Leaf	Os09g0307400	LOC_Os09g13680.1					TO:0000280 - seedling vigor, TO:0000207 - plant height	PO:0025034 - leaf , PO:0000017 - vascular leaf primordium 
26556	ZOS9-05	OsZOS9-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-05	zinc-finger protein TFIIIA class of Oryza sativa 9-05, ZPT of Oryza sativa 9-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-05		9			Os09g0382000/Os09g0382120	LOC_Os09g21430.1						
26557	ZOS9-06	OsZOS9-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-06	zinc-finger protein TFIIIA class of Oryza sativa 9-06, ZPT of Oryza sativa 9-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-06		9			Os09g0421600	LOC_Os09g25420.1						
26558	DRG9	OsZOS9-07, ZOS9-07, OsDRG9, OsDRG9, ZOS9-07	DROUGHT RESISTANCE GENE 9	zinc-finger protein TFIIIA class of Oryza sativa 9-07, ZPT of Oryza sativa 9-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-07	drg9, drg9-26, drg9-29 and drg9-33, DRG9-DS, DRG9-DR, DRG9Nip, DRG9MH63	9	NCBI SRA database under accession code PRJNA1020189 (RNA-seq of rice leaves:ZH11 and drg9 mutant). NCBI SRA database under accession code PRJNA1063606 (DRG9 RIP-seq).  GO:1990124: messenger ribonucleoprotein complex.	 Tolerance and resistance - Stress tolerance	Os09g0421700	LOC_Os09g25430.1				GO:0008270 - zinc ion binding, GO:0005737 - cytoplasm, GO:0009414 - response to water deprivation, GO:0003725 - double-stranded RNA binding, GO:0010610 - regulation of mRNA stability involved in response to stress, GO:0003676 - nucleic acid binding, GO:0010494 - stress granule	TO:0000276 - drought tolerance	
26559	ZOS9-08	OsZOS9-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-08	zinc-finger protein TFIIIA class of Oryza sativa 9-08, ZPT of Oryza sativa 9-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-08		9			Os09g0421800	LOC_Os09g25440.1						
26560	ZOS9-09	OsZOS9-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-09	zinc-finger protein TFIIIA class of Oryza sativa 9-09, ZPT of Oryza sativa 9-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-09		9				LOC_Os09g26050.1						
26561	ZOS9-10	OsZOS9-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-10	zinc-finger protein TFIIIA class of Oryza sativa 9-10, ZPT of Oryza sativa 9-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-10		9			Os09g0430600	LOC_Os09g26100.1						
26562	ZOS9-11	OsZOS9-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-11	zinc-finger protein TFIIIA class of Oryza sativa 9-11, ZPT of Oryza sativa 9-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-11		9			Os09g0431750	LOC_Os09g26200.1						
26563	ZOS9-12	OsZOS9-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-12	zinc-finger protein TFIIIA class of Oryza sativa 9-12, ZPT of Oryza sativa 9-12	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-12		9		 Tolerance and resistance - Stress tolerance	Os09g0431900	LOC_Os09g26210.1				GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance	PO:0001083 - inflorescence development stage 
26564	ZOS9-13	OsZOS9-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-13	zinc-finger protein TFIIIA class of Oryza sativa 9-13, ZPT of Oryza sativa 9-13	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-13		9			Os09g0445500	LOC_Os09g27320.1						
26565	ZOS9-14	OsZOS9-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-14	zinc-finger protein TFIIIA class of Oryza sativa 9-14, ZPT of Oryza sativa 9-14	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-14		9			Os09g0449400	LOC_Os09g27650.2, LOC_Os09g27650.1						PO:0001083 - inflorescence development stage 
26566	ZOS9-15	OsZOS9-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-15	zinc-finger protein TFIIIA class of Oryza sativa 9-15, ZPT of Oryza sativa 9-15	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-15		9			Os09g0473300/Os09g0473350	LOC_Os09g29750.1						PO:0001083 - inflorescence development stage 
26567	ZOS9-16	OsZOS9-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-16	zinc-finger protein TFIIIA class of Oryza sativa 9-16, ZPT of Oryza sativa 9-16	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-16		9	LOC_Os09g31150 (The locus or model name was not found in Rice Genome Annotation Project (RGAP) Release 7 data) in Agarwal et al. 2007.									
26568	ZOS9-17	OsZOS9-17	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-17	zinc-finger protein TFIIIA class of Oryza sativa 9-17, ZPT of Oryza sativa 9-17	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-17		9			Os09g0555700	LOC_Os09g38340.3, LOC_Os09g38340.2, LOC_Os09g38340.1						
26569	ZOS9-18	OsZOS9-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-18	zinc-finger protein TFIIIA class of Oryza sativa 9-18, ZPT of Oryza sativa 9-18	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-18		9			Os09g0558800	LOC_Os09g38610.1						
26570	ZOS9-20	OsZOS9-20	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-20	zinc-finger protein TFIIIA class of Oryza sativa 9-00, ZPT of Oryza sativa 9-20	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-20		9			Os09g0566100	LOC_Os09g39270.1						
26571	ZOS9-21	OsZOS9-21	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-21	zinc-finger protein TFIIIA class of Oryza sativa 9-21, ZPT of Oryza sativa 9-21	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 9-21		9			Os09g0570200	LOC_Os09g39660.3, LOC_Os09g39660.1, LOC_Os09g39660.2						
26572	ZOS10-01	OsZOS10-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-01	zinc-finger protein TFIIIA class of Oryza sativa 10-01, ZPT of Oryza sativa 10-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-01		10			Os10g0162233/Os10g0162300	LOC_Os10g07470.1						
26573	ZOS10-02	OsZOS10-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-02	zinc-finger protein TFIIIA class of Oryza sativa 10-02, ZPT of Oryza sativa 10-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-02		10			Os10g0324600	LOC_Os10g17740.1						
26574	ZOS10-03	OsZOS10-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-03	zinc-finger protein TFIIIA class of Oryza sativa 10-03, ZPT of Oryza sativa 10-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-03		10		 Tolerance and resistance - Stress tolerance	Os10g0330300	LOC_Os10g18364.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26575	ZOS10-04	OsZOS10-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-04	zinc-finger protein TFIIIA class of Oryza sativa 10-04, ZPT of Oryza sativa 10-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-04		10			Os10g0419200	LOC_Os10g28330.1						
26576	ZOS10-05	OsZOS10-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-05	zinc-finger protein TFIIIA class of Oryza sativa 10-05, ZPT of Oryza sativa 10-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-05		10			Os10g0486300	LOC_Os10g34500.1						
26577	ZOS10-06	OsZOS10-06, OsRFP, OsRING134, RING134, OsHAKAI, HAKAI	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-06	zinc-finger protein TFIIIA class of Oryza sativa 10-06, ZPT of Oryza sativa 10-06, RING finger protein, RING-type E3 ubiquitin ligase 134, E3 ubiquitin ligase HAKAI	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-06		10	N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex. GO:0061630 ubiquitin protein ligase activity. GO:0036396: RNA N6-methyladenosine methyltransferase complex.	 Tolerance and resistance - Stress tolerance,  Biochemical character,  Tolerance and resistance - Disease resistance	Os10g0494500	LOC_Os10g35190.1				GO:0009611 - response to wounding, GO:0046872 - metal ion binding, GO:0030155 - regulation of cell adhesion, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation	TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance	
26578	ZOS10-07	OsZOS10-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-07	zinc-finger protein TFIIIA class of Oryza sativa 10-07, ZPT of Oryza sativa 10-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 10-07		10			Os10g0555300	LOC_Os10g40660.1						PO:0001083 - inflorescence development stage 
26579	ZOS11-01	OsZOS11-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-01	zinc-finger protein TFIIIA class of Oryza sativa 11-01, ZPT of Oryza sativa 11-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-01		11			Os11g0169400	LOC_Os11g06840.1						
26580	ZOS11-02	OsZOS11-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-02	zinc-finger protein TFIIIA class of Oryza sativa 11-02, ZPT of Oryza sativa 11-02	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-02		11			Os11g0442900	LOC_Os11g25610.1						
26581	ZOS11-03	OsZOS11-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-03	zinc-finger protein TFIIIA class of Oryza sativa 11-03, ZPT of Oryza sativa 11-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-03		11			Os11g0498400	LOC_Os11g30484.1						
26582	ZOS11-04	OsZOS11-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-04	zinc-finger protein TFIIIA class of Oryza sativa 11-04, ZPT of Oryza sativa 11-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-04		11			Os11g0549607/Os11g0549610	LOC_Os11g34700.1						
26583	ZOS11-05	OsZOS11-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-05	zinc-finger protein TFIIIA class of Oryza sativa 11-05, ZPT of Oryza sativa 11-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-05		11			Os11g0577700	LOC_Os11g36930.1						
26584	ZOS11-06	OsZOS11-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-06	zinc-finger protein TFIIIA class of Oryza sativa 11-06, ZPT of Oryza sativa 11-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-06		11			Os11g0596200/Os11g0596250	LOC_Os11g38330.3, LOC_Os11g38330.1, LOC_Os11g38330.2						
26585	ZOS11-07	OsZOS11-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-07	zinc-finger protein TFIIIA class of Oryza sativa 11-07, ZPT of Oryza sativa 11-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-07		11				LOC_Os11g39580.1						
26586	ZOS11-08	OsZOS11-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-08	zinc-finger protein TFIIIA class of Oryza sativa 11-08, ZPT of Oryza sativa 11-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-08		11				LOC_Os11g39630.1						
26587	ZOS11-09	OsZOS11-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-09	zinc-finger protein TFIIIA class of Oryza sativa 11-09, ZPT of Oryza sativa 11-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-09		11			Os11g0702300	LOC_Os11g47620.1						
26588	ZOS11-10	OsZOS11-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-10	zinc-finger protein TFIIIA class of Oryza sativa 11-10, ZPT of Oryza sativa 11-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-10		11			Os11g0702400	LOC_Os11g47630.1						
26589	ZOS11-11	OsZOS11-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-11	zinc-finger protein TFIIIA class of Oryza sativa 11-11, ZPT of Oryza sativa 11-11	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 11-11		11			Os11g0707300	LOC_Os11g48000.1						
26590	ZOS12-01	OsZOS12-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-01	zinc-finger protein TFIIIA class of Oryza sativa 12-01, ZPT of Oryza sativa 12-01	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-01		12		 Tolerance and resistance - Stress tolerance	Os12g0155300	LOC_Os12g05920.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26591	ZOS12-03	OsZOS12-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-03	zinc-finger protein TFIIIA class of Oryza sativa 12-03, ZPT of Oryza sativa 12-03	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-03		12			Os12g0233400	LOC_Os12g13130.2, LOC_Os12g13130.4, LOC_Os12g13130.3, LOC_Os12g13130.1						
26592	ZOS12-04	OsZOS12-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-04	zinc-finger protein TFIIIA class of Oryza sativa 12-04, ZPT of Oryza sativa 12-04	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-04		12		 Tolerance and resistance - Stress tolerance	Os12g0279100	LOC_Os12g18150.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26593	ZOS12-05	OsZOS12-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-05	zinc-finger protein TFIIIA class of Oryza sativa 12-05, ZPT of Oryza sativa 12-05	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-05		12			Os12g0502700	LOC_Os12g31840.1						
26594	ZOS12-06	OsZOS12-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-06	zinc-finger protein TFIIIA class of Oryza sativa 12-06, ZPT of Oryza sativa 12-06	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-06		12			Os12g0578600	LOC_Os12g38940.1						
26595	ZOS12-07	OsZOS12-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-07	zinc-finger protein TFIIIA class of Oryza sativa 12-07, ZPT of Oryza sativa 12-07	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-07		12			Os12g0578800	LOC_Os12g38960.1						PO:0001083 - inflorescence development stage 
26596	ZOS12-08	OsZOS12-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-08	zinc-finger protein TFIIIA class of Oryza sativa 12-08, ZPT of Oryza sativa 12-08	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-08		12		 Tolerance and resistance - Stress tolerance	Os12g0581900	LOC_Os12g39220.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
26597	ZOS12-09	OsZOS12-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-09	zinc-finger protein TFIIIA class of Oryza sativa 12-09, ZPT of Oryza sativa 12-09	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-09		12		 Tolerance and resistance - Stress tolerance	Os12g0583700	LOC_Os12g39400.1				GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance	PO:0001170 - seed development stage 
26598	ZOS12-10	OsZOS12-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-10	zinc-finger protein TFIIIA class of Oryza sativa 12-10, ZPT of Oryza sativa 12-10	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 12-10		12			Os12g0617000	LOC_Os12g42250.1						
26599	ZOSA	OsZOSa, ZOSa	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA A	zinc-finger protein TFIIIA class of Oryza sativa a, ZPT of Oryza sativa a	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA A												
26600	ZOSB	OsZOSb, ZOSb	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA B	zinc-finger protein TFIIIA class of Oryza sativa b, ZPT of Oryza sativa b	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA B												
26601	ZOSC	OsZOSc, ZOSc	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA C	zinc-finger protein TFIIIA class of Oryza sativa c, ZPT of Oryza sativa c	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA C												
26602	ZOSD	OsZOSd, ZOSd	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA D	zinc-finger protein TFIIIA class of Oryza sativa d, ZPT of Oryza sativa d	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA D												
26603	ZOSE	OsZOSe, ZOSe	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA E	zinc-finger protein TFIIIA class of Oryza sativa e, ZPT of Oryza sativa e	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA E												
26604	ZOSF	OsZOSf, ZOSf	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA F	zinc-finger protein TFIIIA class of Oryza sativa f, ZPT of Oryza sativa f	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA F												
26605	ZOSG	OsZOSg, ZOSg	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA G	zinc-finger protein TFIIIA class of Oryza sativa g, ZPT of Oryza sativa g	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA G												
26606	ZOSH	OsZOSh, ZOSh	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA H	zinc-finger protein TFIIIA class of Oryza sativa h, ZPT of Oryza sativa h	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA H												
26607	ZOSI	OsZOSi, ZOSi	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA I	zinc-finger protein TFIIIA class of Oryza sativa i, ZPT of Oryza sativa i	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA I												
26608	ZOSJ	OsZOSj, ZOSj	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA J	zinc-finger protein TFIIIA class of Oryza sativa j, ZPT of Oryza sativa j	ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA J												
26610	LESV	OsLESV, LSD1, OsLSD1	LIKE EARLY STARVATION	leaf starch deficiency 1, floury endosperm9, floury endosperm 9		oslesv, oslesv-1, oslesv-2, lsd1, flo9	11	the rice ortholog of AtLESV. GO:2001070: starch binding. GO:2000904: regulation of starch metabolic process. GO:0090549: response to carbon starvation. TO:0001069: cooking quality trait. TO:0000975: grain width. GO:0062052: starch granule initiation.	 Seed - Physiological traits - Storage substances,  Tolerance and resistance - Stress tolerance,  Character as QTL - Grain quality,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape,  Seed - Morphological traits - Endosperm,  Vegetative organ - Culm	Os11g0586300	LOC_Os11g37560.1, LOC_Os11g37560.2				GO:0009507 - chloroplast, GO:0042594 - response to starvation, GO:0007623 - circadian rhythm, GO:0005982 - starch metabolic process, GO:0043036 - starch grain, GO:0009570 - chloroplast stroma, GO:0010581 - regulation of starch biosynthetic process, GO:0009960 - endosperm development	TO:0000196 - amylose content, TO:0000696 - starch content, TO:0000396 - grain yield, TO:0000162 - seed quality, TO:0000001 - carbon sensitivity, TO:0000734 - grain length, TO:0002656 - starch grain shape, TO:0000455 - seed set percent, TO:0000207 - plant height, TO:0000100 - shrunken endosperm, TO:0000104 - floury endosperm, TO:0000449 - grain yield per plant, TO:0000382 - 1000-seed weight, TO:0000399 - grain thickness, TO:0000487 - endosperm color, TO:0002658 - starch grain synthesis, TO:0000567 - tiller angle, TO:0000598 - protein content, TO:0000462 - gelatinization temperature, TO:0000291 - carbohydrate content, TO:0000328 - sucrose content, TO:0001015 - photosynthetic rate, TO:0000346 - tiller number	PO:0009089 - endosperm , PO:0025034 - leaf , PO:0007633 - endosperm development stage 
26611	VIR	OsVIR	VIRILIZER	OsVIRILIZER	VIRILIZER		3	N6-methyladenosine (m6A) methylation regulatory gene, a component of the writer (RNA methyltransferase) complex. GO:0036396: RNA N6-methyladenosine methyltransferase complex.	 Biochemical character,  Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os03g0554900	LOC_Os03g35340.1				GO:0009611 - response to wounding, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0042742 - defense response to bacterium	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance	
26612	ALKBH8A	OsALKBH8A	ALKB HOMOLOG 8A	AlkB homolog 8A	ALKB HOMOLOG 8A		10	Alkylation B family protein. N6-methyladenosine (m6A) methylation regulatory gene, eraser enzyme (RNA demethylase).		Os10g0116900	LOC_Os10g02760.2, LOC_Os10g02760.1				GO:0006402 - mRNA catabolic process, GO:0003729 - mRNA binding, GO:0032451 - demethylase activity		
26613	ECT2	OsECT2	EVOLUTIONARILY CONSERVED C TERMINAL REGION 2	Evolutionarily conserved C terminal region 2, YTH domain protein ECT2	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 2		1	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os01g0679900	LOC_Os01g48790.1, LOC_Os01g48790.3, LOC_Os01g48790.2				GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0003729 - mRNA binding, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009269 - response to desiccation	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000439 - fungal disease resistance	PO:0009010 - seed 
26614	ECT4	OsECT4	EVOLUTIONARILY CONSERVED C TERMINAL REGION 4	Evolutionarily conserved C terminal region 4, YTH domain protein ECT4	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 4		3	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os03g0317000	LOC_Os03g20180.2, LOC_Os03g20180.1				GO:0009409 - response to cold, GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009611 - response to wounding	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0006001 - salt tolerance	
26615	ECT5	OsECT5	EVOLUTIONARILY CONSERVED C TERMINAL REGION 5	Evolutionarily conserved C terminal region 5, YTH domain protein ECT5	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 5		8	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance	Os08g0556000	LOC_Os08g44200.1				GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0005737 - cytoplasm, GO:0003729 - mRNA binding, GO:0042742 - defense response to bacterium	TO:0000276 - drought tolerance, TO:0000315 - bacterial disease resistance, TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000303 - cold tolerance	PO:0005360 - aleurone layer , PO:0009005 - root 
26616	ECT7	OsECT7	EVOLUTIONARILY CONSERVED C TERMINAL REGION 7	Evolutionarily conserved C terminal region 7, YTH domain protein ECT7	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 7		4	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os04g0129300	LOC_Os04g04000.2, LOC_Os04g04000.1				GO:0009651 - response to salt stress, GO:0003729 - mRNA binding, GO:0050832 - defense response to fungus, GO:0042742 - defense response to bacterium, GO:0005737 - cytoplasm, GO:0009611 - response to wounding, GO:0009409 - response to cold, GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation	TO:0000315 - bacterial disease resistance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	
26617	ECT8	OsECT8, OsYTH07, YTH07	EVOLUTIONARILY CONSERVED C TERMINAL REGION 8	Evolutionarily conserved C terminal region 8, YTH domain protein ECT8, YT521-B homology 07, YT521-B-like family protein 07	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 8	yth07, yth07-1, yth07-4	4	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Stress tolerance,  Tolerance and resistance - Disease resistance,  Reproductive organ - Heading date	Os04g0608800	LOC_Os04g51940.1, LOC_Os04g51940.3, LOC_Os04g51940.2				GO:0009269 - response to desiccation, GO:0009414 - response to water deprivation, GO:0009611 - response to wounding, GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0048578 - positive regulation of long-day photoperiodism, flowering, GO:0048576 - positive regulation of short-day photoperiodism, flowering	TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000276 - drought tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000137 - days to heading, TO:0006001 - salt tolerance	
26618	ECT9	OsECT9	EVOLUTIONARILY CONSERVED C TERMINAL REGION 9	Evolutionarily conserved C terminal region 9, YTH domain protein ECT9	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 9		5	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0105600	LOC_Os05g01520.1				GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0050832 - defense response to fungus, GO:0009611 - response to wounding, GO:0009269 - response to desiccation, GO:0009409 - response to cold, GO:0003729 - mRNA binding	TO:0000074 - blast disease, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance, TO:0000315 - bacterial disease resistance, TO:0000439 - fungal disease resistance, TO:0000175 - bacterial blight disease resistance	
26619	ECT10	OsECT10	EVOLUTIONARILY CONSERVED C TERMINAL REGION 10	Evolutionarily conserved C terminal region 10, YTH domain protein ECT10	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 10		5	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os05g0159700	LOC_Os05g06740.1				GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation, GO:0009611 - response to wounding, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance	
26620	ECT12	OsECT12	EVOLUTIONARILY CONSERVED C TERMINAL REGION 12	Evolutionarily conserved C terminal region 12, YTH domain protein ECT12	EVOLUTIONARILY CONSERVED C TERMINAL REGION PROTEIN 12		8	N6-methyladenosine (m6A) methylation regulatory gene, reader (YTH (YT521-B homology) domain) protein. GO:1990247: N6-methyladenosine-containing RNA reader activity. GO:0061157: mRNA destabilization.	 Tolerance and resistance - Disease resistance,  Tolerance and resistance - Stress tolerance	Os08g0224200	LOC_Os08g12760.3, LOC_Os08g12760.4, LOC_Os08g12760.1, LOC_Os08g12760.2				GO:0009611 - response to wounding, GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0042742 - defense response to bacterium, GO:0050832 - defense response to fungus, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009269 - response to desiccation	TO:0006001 - salt tolerance, TO:0000175 - bacterial blight disease resistance, TO:0000074 - blast disease, TO:0000439 - fungal disease resistance, TO:0000315 - bacterial disease resistance, TO:0000303 - cold tolerance, TO:0000276 - drought tolerance	
26621	PUX8B	OsPUX8B, OsPUX8B.1, OsPUX8B.2, OsPUX8B.3	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 8B	plant ubiquitin regulatory X domain-containing protein 8B, plant UBX domain-containing protein 8B	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 8B	Ospux8b, Ospux8b-ko	9	GO:1900150: regulation of defense response to fungus. GO:0140426: PAMP-triggered immunity signalling pathway.	 Tolerance and resistance - Disease resistance	Os09g0525600	LOC_Os09g35710.2, LOC_Os09g35710.3, LOC_Os09g35710.1				GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process, GO:0005634 - nucleus, GO:0002238 - response to molecule of fungal origin, GO:0043130 - ubiquitin binding, GO:0005783 - endoplasmic reticulum, GO:0043226 - organelle, GO:0010508 - positive regulation of autophagy, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0005886 - plasma membrane	TO:0000074 - blast disease	
26622	PUX8A	OsPUX8A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 8A	plant ubiquitin regulatory X domain-containing protein 8A, plant UBX domain-containing protein 8A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 8A		8			Os08g0546400	LOC_Os08g43300.1				GO:0005783 - endoplasmic reticulum, GO:0043130 - ubiquitin binding		
26623	PUX1	OsPUX1	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 1	plant ubiquitin regulatory X domain-containing protein 1, plant UBX domain-containing protein 1	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 1		4			Os04g0485200	LOC_Os04g40870.1				GO:0051117 - ATPase binding, GO:0032984 - macromolecular complex disassembly		
26624	PUX2	OsPUX2	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 2	plant ubiquitin regulatory X domain-containing protein 2, plant UBX domain-containing protein 2	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 2		9			Os09g0401600	LOC_Os09g23690.1				GO:0006281 - DNA repair, GO:0046872 - metal ion binding, GO:0050832 - defense response to fungus, GO:0003677 - DNA binding		
26625	PUX4A	OsPUX4A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 4A	plant ubiquitin regulatory X domain-containing protein 4A, plant UBX domain-containing protein 4A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 4A		4	GO:0061025: membrane fusion.		Os04g0464500	LOC_Os04g39040.1				GO:0007030 - Golgi organization, GO:0000045 - autophagic vacuole formation, GO:0005829 - cytosol, GO:0005634 - nucleus, GO:0043130 - ubiquitin binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0031468 - nuclear envelope reassembly		
26626	PUX4B	OsPUX4B	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 4B	plant ubiquitin regulatory X domain-containing protein 4B, plant UBX domain-containing protein 4B	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 4B		6	GO:0061025: membrane fusion.		Os06g0634600	LOC_Os06g42810.1				GO:0043130 - ubiquitin binding, GO:0000045 - autophagic vacuole formation, GO:0007030 - Golgi organization, GO:0031468 - nuclear envelope reassembly, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0005829 - cytosol, GO:0005634 - nucleus		
26627	PUX7A	OsPUX7A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 7A	plant ubiquitin regulatory X domain-containing protein 7A, plant UBX domain-containing protein 7A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 7A		4			Os04g0670800	LOC_Os04g57520.1				GO:0005634 - nucleus, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process, GO:0043130 - ubiquitin binding		
26628	PUX7B	OsPUX7B	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 7B	plant ubiquitin regulatory X domain-containing protein 7B, plant UBX domain-containing protein 7B	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 7B		2			Os02g0640700	LOC_Os02g42800.1				GO:0005634 - nucleus, GO:0043130 - ubiquitin binding, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process		
26629	PUX7C	OsPUX7C	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 7C	plant ubiquitin regulatory X domain-containing protein 7C, plant UBX domain-containing protein 7C	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 7C		2	GO:0002189: ribose phosphate diphosphokinase complex.		Os02g0517564	LOC_Os02g31300.1				GO:0005737 - cytoplasm, GO:0000287 - magnesium ion binding, GO:0006164 - purine nucleotide biosynthetic process, GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process, GO:0004749 - ribose phosphate diphosphokinase activity		
26630	PUX10A	OsPUX10A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 10A	plant ubiquitin regulatory X domain-containing protein 10A, plant UBX domain-containing protein 10A	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 10A		10	GO:0036503: ERAD pathway.		Os10g0520600	LOC_Os10g37630.1				GO:0043130 - ubiquitin binding, GO:0005783 - endoplasmic reticulum		
26631	PUX10B	OsPUX10B	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 10B	plant ubiquitin regulatory X domain-containing protein 10B, plant UBX domain-containing protein 10B	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 10B		9	GO:0036503: ERAD pathway.		Os09g0482000	LOC_Os09g30411.1				GO:0005783 - endoplasmic reticulum, GO:0043130 - ubiquitin binding		
26632	PUX11	OsPUX11	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 11	plant ubiquitin regulatory X domain-containing protein 11, plant UBX domain-containing protein 11	PLANT UBIQUITIN REGULATORY X DOMAIN-CONTAINING PROTEIN 11		11			Os11g0293900	LOC_Os11g18880.1, LOC_Os11g18880.3, LOC_Os11g18880.2						
26633	CDC48-6	OsCDC48-6	CELL DIVISION CYCLE 48-6	Cell Division Cycle 48-6, CELL DIVISION CONTROL 48-6	CELL DIVISION CYCLE 48-6		4	GO:1900150: regulation of defense response to fungus. 	 Tolerance and resistance - Disease resistance	Os04g0498800	LOC_Os04g42110.1				GO:0016887 - ATPase activity, GO:0005524 - ATP binding, GO:0050832 - defense response to fungus, GO:0005737 - cytoplasm, GO:0005634 - nucleus, GO:0043161 - proteasomal ubiquitin-dependent protein catabolic process	TO:0000074 - blast disease	
26634	CDC48-4	OsCDC48-4	CELL DIVISION CYCLE 48-4	Cell Division Cycle 48-4, CELL DIVISION CONTROL 48-4	CELL DIVISION CYCLE 48-4		4			Os04g0617600	LOC_Os04g52690.3, LOC_Os04g52690.1, LOC_Os04g52690.2				GO:0016558 - protein import into peroxisome matrix, GO:0006635 - fatty acid beta-oxidation, GO:0005777 - peroxisome, GO:0016020 - membrane, GO:0005829 - cytosol, GO:0005524 - ATP binding, GO:0016887 - ATPase activity, GO:0005778 - peroxisomal membrane		
26635	CDC48-5	OsCDC48-5	CELL DIVISION CYCLE 48-5	Cell Division Cycle 48-5, CELL DIVISION CONTROL 48-5	CELL DIVISION CYCLE 48-5		6	GO:1990275: preribosome binding.		Os06g0109400	LOC_Os06g01980.1				GO:0005524 - ATP binding, GO:0042254 - ribosome biogenesis, GO:0003723 - RNA binding, GO:0005634 - nucleus, GO:0016887 - ATPase activity		
26636	CDC48-7	OsCDC48-7	CELL DIVISION CYCLE 48-7	Cell Division Cycle 48-7, CELL DIVISION CONTROL 48-7	CELL DIVISION CYCLE 48-7		5			Os05g0376200	LOC_Os05g31220.1				GO:0005524 - ATP binding, GO:0016887 - ATPase activity		
26637	RIBA1	OsRibA1, RibA1	RIBOFLAVIN A1	OsRibA isoform 1, RibA protein 1	RIBA PROTEIN 1		8	Q6Z234. 	 Biochemical character	Os08g0481950	LOC_Os08g37605.1, LOC_Os08g37605.2				GO:0009507 - chloroplast, GO:0005525 - GTP binding, GO:0003935 - GTP cyclohydrolase II activity, GO:0046872 - metal ion binding, GO:0009231 - riboflavin biosynthetic process, GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	TO:0000281 - metabolite content related trait	
26638	RIBA2	OsRibA2, RibA2	RIBOFLAVIN A2	OsRibA isoform 2, RibA protein 2	RIBA PROTEIN 2		2	Q0E079. 	 Biochemical character	Os02g0572400	LOC_Os02g36340.1, LOC_Os02g36340.2				GO:0003935 - GTP cyclohydrolase II activity, GO:0009231 - riboflavin biosynthetic process, GO:0046872 - metal ion binding, GO:0005525 - GTP binding, GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GO:0009507 - chloroplast		
26639	MATE19	OsMATE19	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 19	multidrug and toxic compound extrusion 19, multi-antimicrobial extrusion protein 19	MULTIDRUG AND TOXIC COMPOUND EXTRUSION 19		4	rice homolog of AtDTX50. target gene of osa-miR166 family. GO:1990961: xenobiotic detoxification by transmembrane export across the plasma membrane. GO:0080168: abscisic acid transport.	 Seed - Physiological traits - Dormancy,  Biochemical character	Os04g0571600					GO:0042910 - xenobiotic transporter activity, GO:0022857 - transmembrane transporter activity, GO:0010162 - seed dormancy, GO:0015297 - antiporter activity, GO:0016020 - membrane	TO:0000253 - seed dormancy	
26740	VTL1	OsVTL1	VACUOLAR IRON TRANSPORTER-LIKE 1	Vacuolar Iron Transporter-Like 1, NODULIN-21- LIKE	VACUOLAR IRON TRANSPORTER-LIKE 1		2	Q6H658.		Os02g0644200	LOC_Os02g43030.1						
26741	VTL3	OsVTL3	VACUOLAR IRON TRANSPORTER-LIKE 3	Vacuolar Iron Transporter-Like 3, NODULIN-LIKE 3	VACUOLAR IRON TRANSPORTER-LIKE 3		8			Os08g0153300	LOC_Os08g05720.1						
26742	VTL4	OsVTL4	VACUOLAR IRON TRANSPORTER-LIKE 4	Vacuolar Iron Transporter-Like 4	VACUOLAR IRON TRANSPORTER-LIKE 4		11	Q53PN2.		Os11g0161900	LOC_Os11g06310.1						
26743	VSR2	OsVSR2	VACUOLAR SORTING RECEPTOR 2	vacuolar sorting receptor 2	VACUOLAR SORTING RECEPTOR 2		12			Os12g0116000	LOC_Os12g02390.1						
26744	VSR6	OsVSR6	VACUOLAR SORTING RECEPTOR 6	vacuolar sorting receptor 6	VACUOLAR SORTING RECEPTOR 6		6			Os06g0664300	LOC_Os06g45380.1, LOC_Os06g45380.2						
26745	HHC3	OsHHC3	HOMOLOG OF OSGLHAT1 ON CHROMOSOME 3	homolog of OsglHAT1 on chromosome 3	HOMOLOG OF OSGLHAT1 ON CHROMOSOME 3		3			Os03g0205800	LOC_Os03g10810.1, LOC_Os03g10810.2						
26746	HHC7	OsHHC7	HOMOLOG OF OSGLHAT1 ON CHROMOSOME 7	homolog of OsglHAT1 on chromosome 7	HOMOLOG OF OSGLHAT1 ON CHROMOSOME 7		7			Os07g0116600	LOC_Os07g02540.1						
26747	FAR6	OsFAR6	FATTY ACYL-COA REDUCTASE 6	Fatty acyl-CoA reductase 6	FATTY ACYL-COA REDUCTASE 6		7		 Tolerance and resistance - Stress tolerance	Os07g0416050	LOC_Os07g23340.1				GO:0009409 - response to cold, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus, GO:0006970 - response to osmotic stress, GO:0005737 - cytoplasm, GO:0048316 - seed development, GO:0009414 - response to water deprivation	TO:0000303 - cold tolerance, TO:0000276 - drought tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000095 - osmotic response sensitivity, TO:0000653 - seed development trait, TO:0000259 - heat tolerance	PO:0009010 - seed , PO:0025034 - leaf , PO:0001170 - seed development stage , PO:0009005 - root 
26748	FAR7	OsFAR7	FATTY ACYL-COA REDUCTASE 7	Fatty acyl-CoA reductase 7	FATTY ACYL-COA REDUCTASE 7		7	GO:0102965: alcohol-forming long-chain fatty acyl-CoA reductase activity. GO:0035336: long-chain fatty-acyl-CoA metabolic process.	 Tolerance and resistance - Stress tolerance	Os07g0489100	LOC_Os07g30600.1				GO:0009414 - response to water deprivation, GO:0005634 - nucleus, GO:0043231 - intracellular membrane-bounded organelle, GO:0080019 - fatty acyl-CoA reductase (alcohol-forming) activity, GO:0010345 - suberin biosynthetic process, GO:0048316 - seed development	TO:0000276 - drought tolerance, TO:0000653 - seed development trait	PO:0009005 - root , PO:0001170 - seed development stage , PO:0025034 - leaf , PO:0009010 - seed 
26749	RLK902-1	OsRLK902-1	RECEPTOR LIKE KINASE 902-1	RECEPTOR LIKE KINASE 902-1	RECEPTOR LIKE KINASE 902-1		3		 Tolerance and resistance - Disease resistance	Os03g0712400	LOC_Os03g50450.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26750	DCP1	OsDCP1	DECAPPING 1	decapping 1	DECAPPING COMPLEX PROTEIN 1		12			Os12g0156400	LOC_Os12g06020.1						
26751	SSR1	OsSSR1	SECRETORY SMALL PROTEIN RECEPTOR 1	secretory small protein receptor 1	SECRETORY SMALL PROTEIN RECEPTOR 1	ssr1	3		 Tolerance and resistance - Disease resistance	Os03g0269700	LOC_Os03g16290.1				GO:0005886 - plasma membrane, GO:0050832 - defense response to fungus, GO:0016020 - membrane, GO:0008375 - acetylglucosaminyltransferase activity, GO:0002253 - activation of immune response	TO:0000074 - blast disease	
26752	CLV2C	OsCLV2c	CLAVATA 2C	CLAVATA2c	CLAVATA 2C	osclv2c	6	TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Character as QTL - Plant growth activity,  Reproductive organ - panicle,  Seed - Morphological traits - Grain shape,  Character as QTL - Yield and productivity	Os06g0588800	LOC_Os06g38930.1				GO:0004674 - protein serine/threonine kinase activity, GO:0005524 - ATP binding, GO:0016020 - membrane	TO:0000040 - panicle length, TO:0000019 - seedling height, TO:0000382 - 1000-seed weight, TO:0000397 - grain size, TO:0002730 - grain shape, TO:0000411 - seed length to width ratio, TO:0000734 - grain length	PO:0009049 - inflorescence 
26753	CLV2D	OsCLV2d	CLAVATA 2D	CLAVATA2d	CLAVATA 2D	osclv2d	6	TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape	Os06g0589600	LOC_Os06g38970.1				GO:0009506 - plasmodesma, GO:0005524 - ATP binding, GO:0004714 - transmembrane receptor protein tyrosine kinase activity, GO:0005886 - plasma membrane	TO:0000734 - grain length, TO:0000397 - grain size, TO:0000411 - seed length to width ratio, TO:0002730 - grain shape	PO:0009049 - inflorescence 
26754	CRN1	OsCRN1	CORYNE 1	CORYNE1	CORYNE 1	oscrn1	1	TO:0000975: grain width. PO:0030123: panicle inflorescence.	 Seed - Morphological traits - Grain shape	Os01g0927500	LOC_Os01g70260.1, LOC_Os01g70260.2				GO:0005886 - plasma membrane, GO:0010075 - regulation of meristem growth, GO:0004672 - protein kinase activity, GO:0033612 - receptor serine/threonine kinase binding, GO:0010078 - maintenance of root meristem identity, GO:0005789 - endoplasmic reticulum membrane, GO:0045595 - regulation of cell differentiation, GO:0010088 - phloem development, GO:0009909 - regulation of flower development, GO:0005524 - ATP binding, GO:0001653 - peptide receptor activity	TO:0002730 - grain shape, TO:0000397 - grain size, TO:0000734 - grain length, TO:0000411 - seed length to width ratio	PO:0009049 - inflorescence 
26755	CLV2A	OsCLV2a	CLAVATA 2A	CLAVATA2a	CLAVATA 2A	osclv2a	2	TO:0000975: grain width.	 Seed - Morphological traits - Grain shape	Os02g0603100	LOC_Os02g39100.1				GO:0010075 - regulation of meristem growth, GO:0010088 - phloem development, GO:0010078 - maintenance of root meristem identity, GO:0001653 - peptide receptor activity, GO:0005886 - plasma membrane, GO:0005789 - endoplasmic reticulum membrane, GO:0045595 - regulation of cell differentiation	TO:0000734 - grain length, TO:0000397 - grain size, TO:0000411 - seed length to width ratio, TO:0002730 - grain shape	
26756	MORN1	OsMORN1					10		 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility	Os10g0565000	LOC_Os10g41534.3				GO:0009409 - response to cold	TO:0000421 - pollen fertility, TO:0000303 - cold tolerance	
26757	MORN2	OsMORN2					9		 Tolerance and resistance - Stress tolerance,  Reproductive organ - Pollination, fertilization, fertility	Os09g0453900	LOC_Os09g28060.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance, TO:0000421 - pollen fertility	
26758	CNL1	OsCNL1	CINNAMATE:COA LIGASE 1	cinnamate:CoA ligase 1	CINNAMATE:COA LIGASE 1		3			Os03g0130100	LOC_Os03g03790.1						
26759	CNL2	OsCNL2	CINNAMATE:COA LIGASE 2	cinnamate:CoA ligase 2	CINNAMATE:COA LIGASE 2		9			Os09g0555800	LOC_Os09g38350.1						
26760	CTK1	OsCTK1	CHILLING TOLERANCE KINASE 1	Chilling tolerance kinase 1	CHILLING TOLERANCE KINASE 1		1		 Tolerance and resistance - Stress tolerance	Os01g0231500	LOC_Os01g13060.1, LOC_Os01g13060.3, LOC_Os01g13060.2				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
26761	P3B	OsP3B					1		 Tolerance and resistance - Stress tolerance	Os01g0231700	LOC_Os01g13080.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
26762	STK38	OsSTK38, TINY1, OsTINY1	SERINE/THREONINE-PROTEIN KINASE 38		SERINE/THREONINE-PROTEIN KINASE 38		1		 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os01g0186700	LOC_Os01g09200.1					TO:0000397 - grain size, TO:0000919 - grain weight	
26763	MOB1A	OsMOB1A	MPS ONE BINDER KINASE ACTIVATOR-LIKE 1A		MPS ONE BINDER KINASE ACTIVATOR-LIKE 1A		3		 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os03g0577200	LOC_Os03g38020.1					TO:0000397 - grain size, TO:0000919 - grain weight	
26765	GSE3	OsGSE3	GRAIN SIZE ON CHROMOSOME 3	grain size on chromosome 3			3	CT831785.	 Seed - Morphological traits - Grain shape	Os03g0764000	LOC_Os03g55530.1					TO:0000397 - grain size	
26766	SRO1B	OsSRO1b	SIMILAR TO RCD ONE 1B	SIMILAR TO RCD ONE 1b, SRO family protein 1b	SIMILAR TO RCD ONE FAMILY PROTEIN 1B		3			Os03g0854800	LOC_Os03g63770.6, LOC_Os03g63770.1, LOC_Os03g63770.5, LOC_Os03g63770.2, LOC_Os03g63770.3, LOC_Os03g63770.4						
26767	BRP5	OsBRP5, PTF2, OsPTF2, OsBRP5/PTF2	TFIIB-RELATED PROTEIN 5	TFIIB-Related Protein 5, pollen-expressed transcription factor 2	TFIIB-RELATED PROTEIN 5		8			Os08g0532500	LOC_Os08g42020.2, LOC_Os08g42020.1						
26768	SG34	OsSG34	SLENDER GRAIN 34	slender grain 34			3		 Seed - Morphological traits - Grain shape,  Character as QTL - Grain quality	Os03g0388800	LOC_Os03g27110.1					TO:0000162 - seed quality, TO:0000397 - grain size	
26769	PIJX	OsPijx					12		 Tolerance and resistance - Disease resistance	Os12g0564800	LOC_Os12g37740.1				GO:0050832 - defense response to fungus	TO:0000074 - blast disease	
26770	PML4	OsPML4	PHOTOSYNTHESIS-AFFECTED MUTANT 71-LIKE 4		PHOTOSYNTHESIS-AFFECTED MUTANT 71-LIKE PROTEIN 4		8	Q6ZIB9. 		Os08g0528500	LOC_Os08g41670.1					TO:0020091 - manganese content	
26771	MAB	OsMAB	MATRIX ATTACHMENT REGION BINDING PROTEIN	matrix attachment region binding protein	MATRIX ATTACHMENT REGION BINDING PROTEIN		12			Os12g0299700	LOC_Os12g20410.3, LOC_Os12g20410.1, LOC_Os12g20410.2						
26772	COG3	OsCOG3	CHILLING-TOLERANCE IN GENG/JAPONICA RICE 3	Chilling-tolerance in Geng/japonica rice 3			11		 Tolerance and resistance - Stress tolerance	Os11g0669100	LOC_Os11g44680.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
26773	LESV	OsLESV, FLO9, OsFLO9	LIKE EARLY STARVATION 1	LIKE EARLY STARVATION1, floury endosperm9			11			Os11g0586300	LOC_Os11g37560.2, LOC_Os11g37560.1						
26774	GT47-1	OsGT47-1	GLYCOSYLTRANSFERASE 47-1	glycosyltransferase 47-1	GLYCOSYLTRANSFERASE 47-1		1	Q8S1X9.		Os01g0926400	LOC_Os01g70180.2, LOC_Os01g70180.1						
26775	CTP-1	Osctp-1	CHILLING TOLERANCE AT THE PLUMULE STAGE	chilling tolerance at the plumule stage			11			Os11g0579200	LOC_Os11g37050.1						
26776	SCR106	OsSCR106	SC-RELATED 106	SC-Related106	SC-RELATED PROTEIN 106		1			Os01g0101600	LOC_Os01g01150.2, LOC_Os01g01150.1, LOC_Os01g01150.3						
26777	XB22A	OsXb22a	XA21-BINDING PROTEIN 22A	Xa21-binding protein 22a	XA21-BINDING PROTEIN 22A		7			Os07g0171100	LOC_Os07g07540.1						
26778	SR45A	OsSR45a					5			Os05g0105900	LOC_Os05g01540.1, LOC_Os05g01540.2						
26779	PGL3A	OsPGL3A	PALE GREEN LEAF 3A	pale green leaf 3A			3			Os03g0136700	LOC_Os03g04390.1				GO:0009658 - chloroplast organization	TO:0002715 - chloroplast development trait	
26780	CTB18	OsMTACP2, MTACP2, OsCTB18	COLD TOLERANCE AT BOOTING STAGE 18	MITOCHONDRIAL ACYL CARRIER PROTEIN 2, cold tolerance at booting stage 18	MITOCHONDRIAL ACYL CARRIER PROTEIN 2		3		 Tolerance and resistance - Stress tolerance	Os03g0352800	LOC_Os03g22950.1				GO:0009409 - response to cold	TO:0000303 - cold tolerance	
26781	SMP2	OsSMP2	STRESS RESPONSE MEMBRANE PROTEIN 2	stress response membrane protein 2	STRESS RESPONSE MEMBRANE PROTEIN 2		12		 Tolerance and resistance - Stress tolerance	Os12g0510750	LOC_Os12g32610.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26782	NDHL	OsNdhl	NDH COMPLEX L SUBUNIT	NDH complex L subunit	NDH COMPLEX L SUBUNIT		5		 Tolerance and resistance - Stress tolerance	Os05g0348100	LOC_Os05g28090.3, LOC_Os05g28090.1, LOC_Os05g28090.2				GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26783	AAT30	OsAAT30	AMINO ACID TRANSPORTER 30	amino acid transporter 30	AMINO ACID TRANSPORTER 30		4	CT836518.		Os04g0201500	LOC_Os04g12499.1						
26784	TMS19	OsTMS19					2			Os02g0321000	LOC_Os02g21580.1, LOC_Os02g21570.1						
26785	XINN1	OsXinN1	XOO INDUCED NLR 1	Xoo induced NLR 1	XOO INDUCED NLR 1		2		 Tolerance and resistance - Disease resistance	Os02g0282000	LOC_Os02g18080.1				GO:0042742 - defense response to bacterium	TO:0000770 - bacterial blight disease resistance	
26786	CRLK2	OsCRLK2	CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2	calcium/calmodulin-regulated receptor-like kinase 2	CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2	osclrk2, oscrlk2-4, oscrlk2-5	6	a candidate gene for qGT6.4 (QTL for gelatinization temperature (GT) 6.4). GO:2000942: regulation of amylopectin metabolic process.	 Seed - Morphological traits - Endosperm,  Seed - Physiological traits - Storage substances,  Character as QTL - Grain quality	Os06g0283300	LOC_Os06g17285.2, LOC_Os06g17285.1				GO:0005886 - plasma membrane, GO:0005986 - sucrose biosynthetic process, GO:0005737 - cytoplasm, GO:0016020 - membrane, GO:0010021 - amylopectin biosynthetic process, GO:0010581 - regulation of starch biosynthetic process, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding	TO:0002658 - starch grain synthesis, TO:0000328 - sucrose content, TO:0000097 - amylopectin content, TO:0002656 - starch grain shape, TO:0000382 - 1000-seed weight, TO:0000266 - chalky endosperm, TO:0000376 - consistency viscosity, TO:0000409 - peak viscosity, TO:0000196 - amylose content, TO:0000462 - gelatinization temperature, TO:0000162 - seed quality	PO:0009010 - seed , PO:0009005 - root , PO:0025034 - leaf 
26787	LCD3	OsLCD3	LOW CADMIUM 3	Low Cadmium 3			1		 Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os01g0967300	LOC_Os01g73640.1					TO:0000396 - grain yield, TO:0000397 - grain size	
26788	BBP1	OsBBP1	OSBZIP72 BINDING PROTEIN 1	OsbZIP72 binding protein 1	OSBZIP72 BINDING PROTEIN 1		3		 Tolerance and resistance - Stress tolerance	Os03g0321500	LOC_Os03g20530.1				GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26789	SRF8	OsSRF8	STRUBBELIG-RECEPTOR FAMILY 8	STRUBBELIG-receptor family 8	STRUBBELIG-RECEPTOR FAMILY 8	Ossrf8, Cr-Ossrf8-1, Cr-Ossrf8-2	2	GO:0062075: pollen aperture formation.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os02g0194600	LOC_Os02g10110.1				GO:0009860 - pollen tube growth, GO:0005886 - plasma membrane, GO:0009846 - pollen germination, GO:0004672 - protein kinase activity, GO:0005524 - ATP binding, GO:0010208 - pollen wall assembly, GO:0009555 - pollen development	TO:0000437 - male sterility	PO:0001004 - anther development stage , PO:0001029 - E tetrad stage , PO:0020047 - microsporocyte , PO:0001007 - pollen development stage 
26790	COI	OsCOI	COILIN	OsCoilin	COILIN		12	a homologue of the signature protein of CBs in Arabidopsis.	 Tolerance and resistance - Disease resistance	Os12g0288600	LOC_Os12g19040.1				GO:0051607 - defense response to virus, GO:0015030 - Cajal body, GO:0030619 - U1 snRNA binding, GO:0030620 - U2 snRNA binding, GO:0000387 - spliceosomal snRNP assembly, GO:0005634 - nucleus	TO:0000213 - rice grassy stunt 1 and 2 virus resistance	
26791	LDP1	OsLDP1	LARGE AND DENSE PANICLE 1 	large and dense panicle 1		ldp1	7	the candidate genes (However, no mutation sites were found in exonic sequences of either of these genes): OsbHLH111 (LOC_Os07g28890), OsEBP2 (LOC_Os07g29320), OsACTPK2 (LOC_Os07g29330), OsUGT709C2 (LOC_Os07g30300). TO:0000975: grain width. GO:0090357: regulation of tryptophan metabolic process.	 Seed - Morphological traits - Grain shape,  Reproductive organ - panicle,  Vegetative organ - Shoot apical meristem(SAM),  Character as QTL - Yield and productivity						GO:0010229 - inflorescence development, GO:0010600 - regulation of auxin biosynthetic process, GO:0009734 - auxin mediated signaling pathway, GO:0006568 - tryptophan metabolic process	TO:0000447 - filled grain number, TO:0000449 - grain yield per plant, TO:0006016 - meristem tissue development trait, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000621 - inflorescence development trait, TO:0006020 - shoot apical meristem development, TO:0000040 - panicle length	PO:0001083 - inflorescence development stage 
26792	EBP2	OsEBP2	EPSTEIN-BARR VIRUS NUCLEAR ANTIGEN 1-BINDING PROTEIN 2		EPSTEIN-BARR VIRUS NUCLEAR ANTIGEN 1-BINDING PROTEIN 2		7	one of four candidate genes for LDP1.		Os07g0475800	LOC_Os07g29320.1				GO:0042273 - ribosomal large subunit biogenesis, GO:0034399 - nuclear periphery, GO:0005730 - nucleolus, GO:0030687 - preribosome, large subunit precursor, GO:0006364 - rRNA processing		
26793	UGT709C2	OsUGT709C2, OsUG709C2, UG709C2	UDP-GLUCOSYLTRANSFERASE 709C2	UDP-glucosyltransferase 709C2, UDP-glucose transporter 709C2	UDP-GLUCOSYLTRANSFERASE 709C2		7	one of four candidate genes for LDP1.		Os07g0486500	LOC_Os07g30300.1				GO:0007165 - signal transduction		
26794	CDP1.5	OsCDP1.5	CUPIN DOMAIN PROTEIN 1.5	cupin domain protein 1.5	CUPIN DOMAIN PROTEIN 1.5		1		 Seed - Physiological traits - Storage substances	Os01g0976200	LOC_Os01g74480.1				GO:0045735 - nutrient reservoir activity		
26795	CDP5.1	OsCDP5.1	CUPIN DOMAIN PROTEIN 5.1	cupin domain protein 5.1	CUPIN DOMAIN PROTEIN 5.1		5	11S Globulin.	 Seed - Physiological traits - Storage substances	Os05g0116000	LOC_Os05g02520.2, LOC_Os05g02520.1, LOC_Os05g02520.3				GO:0045735 - nutrient reservoir activity		
26796	CDP9.1	OsCDP9.1	CUPIN DOMAIN PROTEIN 9.1	cupin domain protein 9.1	CUPIN DOMAIN PROTEIN 9.1		9				LOC_Os09g37958.1						
26797	CDP9.2	OsCDP9.2	CUPIN DOMAIN PROTEIN 9.2	cupin domain protein 9.2	CUPIN DOMAIN PROTEIN 9.2		9			Os09g0552500	LOC_Os09g37967.1						
26798	CDP9.3	OsCDP9.3	CUPIN DOMAIN PROTEIN 9.3	cupin domain protein 9.3	CUPIN DOMAIN PROTEIN 9.3		9			Os09g0552600	LOC_Os09g37976.1						
26799	MBF1C	OsMBF1C	MULTI-PROTEIN BRIDGING FACTOR 1C	multi-protein bridging factor 1C	MULTI-PROTEIN BRIDGING FACTOR 1C		6		 Tolerance and resistance - Stress tolerance	Os06g0592500	LOC_Os06g39240.2, LOC_Os06g39240.1				GO:0005730 - nucleolus, GO:0005634 - nucleus, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat, GO:0009414 - response to water deprivation, GO:0003713 - transcription coactivator activity, GO:0003677 - DNA binding	TO:0000259 - heat tolerance	
26800	DPD1	OsDPD1	DEFECTIVE IN POLLEN ORGANELLE DNA DEGRADATION 1	DEFECTIVE IN POLLEN ORGANELLE DNA DEGRADATION1		osdpd1	3		 Character as QTL - Plant growth activity,  Character as QTL - Yield and productivity	Os03g0301400	LOC_Os03g18940.1				GO:0005737 - cytoplasm, GO:0009507 - chloroplast, GO:0006308 - DNA catabolic process, GO:0003676 - nucleic acid binding, GO:0008296 - 3'-5'-exodeoxyribonuclease activity	TO:0000455 - seed set percent, TO:0000357 - growth and development trait, TO:0000207 - plant height, TO:0000457 - total biomass yield, TO:0000269 - 100-seed weight, TO:0000040 - panicle length, TO:0000447 - filled grain number, TO:0000180 - spikelet fertility, TO:0000590 - grain weight	PO:0000056 - flower bud , PO:0025281 - pollen 
26801	DPD1L	OsDPD1L	DEFECTIVE IN POLLEN ORGANELLE DNA DEGRADATION 1-LIKE	DEFECTIVE IN POLLEN ORGANELLE DNA DEGRADATION1-like, OsDPD1-like		dpd1-like	4		 Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity	Os04g0623400	LOC_Os04g53200.2, LOC_Os04g53200.1				GO:0005737 - cytoplasm, GO:0008296 - 3'-5'-exodeoxyribonuclease activity, GO:0005739 - mitochondrion, GO:0003676 - nucleic acid binding, GO:0006308 - DNA catabolic process	TO:0000590 - grain weight, TO:0000357 - growth and development trait, TO:0000455 - seed set percent, TO:0000180 - spikelet fertility, TO:0000447 - filled grain number, TO:0000040 - panicle length, TO:0000207 - plant height, TO:0000457 - total biomass yield, TO:0000269 - 100-seed weight	PO:0000056 - flower bud 
26802	AAO6	OsAAO6	ASCORBATE OXIDASE 6		ASCORBATE OXIDASE 6		1		 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0816700	LOC_Os01g60080.1				GO:0009414 - response to water deprivation, GO:0005507 - copper ion binding, GO:0016491 - oxidoreductase activity	TO:0000276 - drought tolerance	
26803	MIR9564	miR9564, Osa-miR9564, OsmiR9564	MICRORNA 9564	MICRORNA9564	_		3	OsMIR9564 target genes: Os11g0272800 (ARPS).	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0009555 - pollen development, GO:0035195 - gene silencing by miRNA	TO:0000053 - pollen sterility	PO:0001007 - pollen development stage , PO:0009066 - anther 
26804	MIR27874	miR27874, Osa-miR27874, OsmiR27874	MICRORNA 27874	MICRORNA27874	_		3	OsMIR9564 target genes: Os04g0394500 (OsRPC53).	 Other,  Reproductive organ - Pollination, fertilization, fertility - Male sterility						GO:0035195 - gene silencing by miRNA		PO:0009066 - anther 
26805	ARPS	OsARPS	AUTOTETRAPLOID RICE POLLEN STERILITY	Autotetraploid rice pollen sterility	_		3	predicted target of miR9564.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Other,  Vegetative organ - Culm,  Reproductive organ - panicle,  Character as QTL - Yield and productivity						GO:0035195 - gene silencing by miRNA, GO:0009555 - pollen development	TO:0000040 - panicle length, TO:0000455 - seed set percent, TO:0000421 - pollen fertility, TO:0000207 - plant height, TO:0000218 - pollen abortion type, TO:0000053 - pollen sterility, TO:0000447 - filled grain number	PO:0001007 - pollen development stage , PO:0009066 - anther 
26806	M2T	OsM2T	_		_		3	predicted target of miR528.	 Other						GO:0035195 - gene silencing by miRNA		PO:0009066 - anther 
26807	PRB1	OsPRB1, Prb1	BASIC PATHOGENESIS-RELATED PROTEIN 1		BASIC PATHOGENESIS-RELATED PROTEIN 1		7		 Tolerance and resistance - Disease resistance	Os07g0125500	LOC_Os07g03368.1				GO:0005615 - extracellular space, GO:0043068 - positive regulation of programmed cell death, GO:0005634 - nucleus, GO:0002238 - response to molecule of fungal origin, GO:0050832 - defense response to fungus	TO:0000255 - sheath blight disease resistance	
26808	KH1	OsKH1	K-HOMOLOGOUS FAMILY PROTEIN 1	K-homologous family protein 1	K-HOMOLOGOUS FAMILY PROTEIN 1		1			Os01g0231900 	LOC_Os01g13100.1, LOC_Os01g13100.2, LOC_Os01g13100.3				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0003723 - RNA binding, GO:0006307 - DNA dealkylation, GO:0006355 - regulation of transcription, DNA-dependent, GO:0009507 - chloroplast	TO:0006001 - salt tolerance	
26809	KH2	OsKH2	K-HOMOLOGOUS FAMILY PROTEIN 2	K-homologous family protein 2	K-HOMOLOGOUS FAMILY PROTEIN 2		1			Os01g0235800 	LOC_Os01g13470.1				GO:0005739 - mitochondrion, GO:0003723 - RNA binding, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26810	KH3	OsKH3	K-HOMOLOGOUS FAMILY PROTEIN 3	K-homologous family protein 3	K-HOMOLOGOUS FAMILY PROTEIN 3		1			Os01g0533450  					GO:0003723 - RNA binding, GO:0009507 - chloroplast		
26811	KH4	OsKH4	K-HOMOLOGOUS FAMILY PROTEIN 4	K-homologous family protein 4	K-HOMOLOGOUS FAMILY PROTEIN 4		1			Os01g0566900   	LOC_Os01g38620.1, LOC_Os01g38620.2, LOC_Os01g38620.3				GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, GO:0008408 - 3'-5' exonuclease activity, GO:0005737 - cytoplasm, GO:0003723 - RNA binding		PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0009005 - root , PO:0020104 - leaf sheath , PO:0009049 - inflorescence , PO:0009047 - stem , PO:0025034 - leaf , PO:0009066 - anther , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009038 - palea , PO:0009072 - plant ovary 
26812	KH5	OsKH5	K-HOMOLOGOUS FAMILY PROTEIN 5	K-homologous family protein 5	K-HOMOLOGOUS FAMILY PROTEIN 5		1			Os01g0788950    	LOC_Os01g57910.1				GO:0009737 - response to abscisic acid stimulus, GO:0005856 - cytoskeleton, GO:0005730 - nucleolus, GO:0003723 - RNA binding	TO:0000615 - abscisic acid sensitivity	
26813	KH6	OsKH6	K-HOMOLOGOUS FAMILY PROTEIN 6	K-homologous family protein 6	K-HOMOLOGOUS FAMILY PROTEIN 6		1			Os01g0818300     	LOC_Os01g60260.2, LOC_Os01g60260.1				GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus		
26814	KH7	OsKH7	K-HOMOLOGOUS FAMILY PROTEIN 7	K-homologous family protein 7	K-HOMOLOGOUS FAMILY PROTEIN 7		1		 Tolerance and resistance - Stress tolerance	Os01g0886300     	LOC_Os01g66300.1				GO:0003729 - mRNA binding, GO:0009651 - response to salt stress, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus	TO:0006001 - salt tolerance	
26815	KH8	OsKH8	K-HOMOLOGOUS FAMILY PROTEIN 8	K-homologous family protein 8	K-HOMOLOGOUS FAMILY PROTEIN 8		2		 Tolerance and resistance - Stress tolerance	Os02g0125500      	LOC_Os02g03310.1				GO:0005634 - nucleus, GO:0003729 - mRNA binding, GO:0009651 - response to salt stress, GO:0010468 - regulation of gene expression, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance	
26816	KH10	OsKH10	K-HOMOLOGOUS FAMILY PROTEIN 10	K-homologous family protein 10	K-HOMOLOGOUS FAMILY PROTEIN 10		2		 Tolerance and resistance - Stress tolerance	Os02g0224300       	LOC_Os02g13130.3, LOC_Os02g13130.1, LOC_Os02g13130.2				GO:0005634 - nucleus, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26817	KH11	OsKH11	K-HOMOLOGOUS FAMILY PROTEIN 11	K-homologous family protein 11	K-HOMOLOGOUS FAMILY PROTEIN 11		2			Os02g0722700        	LOC_Os02g49080.1				GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0009507 - chloroplast, GO:0003729 - mRNA binding		
26818	KH12	OsKH12	K-HOMOLOGOUS FAMILY PROTEIN 12	K-homologous family protein 12	K-HOMOLOGOUS FAMILY PROTEIN 12	Oskh12	2	GO:2000377: regulation of reactive oxygen species metabolic process.	 Tolerance and resistance - Stress tolerance	Os02g0822300         	LOC_Os02g57640.1				GO:0005737 - cytoplasm, GO:0005856 - cytoskeleton, GO:0009651 - response to salt stress, GO:0003729 - mRNA binding	TO:0002662 - leaf rolling tolerance, TO:0006001 - salt tolerance	PO:0009030 - carpel , PO:0009038 - palea , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009047 - stem , PO:0009049 - inflorescence , PO:0009066 - anther , PO:0009037 - lemma 
26819	KH13	OsKH13	K-HOMOLOGOUS FAMILY PROTEIN 13	K-homologous family protein 13	K-HOMOLOGOUS FAMILY PROTEIN 13		3		 Tolerance and resistance - Stress tolerance	Os03g0115200          	LOC_Os03g02420.1				GO:0009737 - response to abscisic acid stimulus, GO:0009651 - response to salt stress, GO:0005730 - nucleolus, GO:0005737 - cytoplasm, GO:0003723 - RNA binding	TO:0006001 - salt tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009005 - root , PO:0009047 - stem , PO:0009066 - anther , PO:0009030 - carpel , PO:0009037 - lemma , PO:0009038 - palea , PO:0009072 - plant ovary , PO:0009009 - plant embryo , PO:0009089 - endosperm , PO:0025034 - leaf 
26820	KH14	OsKH14	K-HOMOLOGOUS FAMILY PROTEIN 14	K-homologous family protein 14	K-HOMOLOGOUS FAMILY PROTEIN 14		3			Os03g0376800           	LOC_Os03g25970.1, LOC_Os03g25970.2				GO:0005737 - cytoplasm, GO:0010468 - regulation of gene expression, GO:0005634 - nucleus, GO:0003729 - mRNA binding		
26821	KH15	OsKH15	K-HOMOLOGOUS FAMILY PROTEIN 15	K-homologous family protein 15	K-HOMOLOGOUS FAMILY PROTEIN 15		3			Os03g0627500            	LOC_Os03g42900.2, LOC_Os03g42900.1				GO:0005737 - cytoplasm, GO:0010468 - regulation of gene expression, GO:0003729 - mRNA binding, GO:0005634 - nucleus		
26822	KH18	OsKH18	K-HOMOLOGOUS FAMILY PROTEIN 18	K-homologous family protein 18	K-HOMOLOGOUS FAMILY PROTEIN 18		5		 Tolerance and resistance - Stress tolerance	Os05g0419500             	LOC_Os05g34670.1				GO:0003729 - mRNA binding, GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0005737 - cytoplasm	TO:0006001 - salt tolerance	
26823	KH19	OsKH19	K-HOMOLOGOUS FAMILY PROTEIN 19	K-homologous family protein 19	K-HOMOLOGOUS FAMILY PROTEIN 19		5			Os05g0481500              	LOC_Os05g40290.3, LOC_Os05g40290.2, LOC_Os05g40290.1				GO:0000381 - regulation of alternative nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0003729 - mRNA binding		
26824	KH20	OsKH20	K-HOMOLOGOUS FAMILY PROTEIN 20	K-homologous family protein 20	K-HOMOLOGOUS FAMILY PROTEIN 20		6	GO:1900150: regulation of defense response to fungus.		Os06g0342500               	LOC_Os06g23460.1				GO:0070878 - pri-miRNA binding, GO:0006970 - response to osmotic stress, GO:0009737 - response to abscisic acid stimulus, GO:0010445 - nuclear dicing body, GO:0031053 - primary microRNA processing, GO:0005634 - nucleus, GO:0003729 - mRNA binding, GO:0070161 - anchoring junction, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0010286 - heat acclimation, GO:0002102 - podosome	TO:0000615 - abscisic acid sensitivity	
26825	KH22	OsKH22	K-HOMOLOGOUS FAMILY PROTEIN 22	K-homologous family protein 22	K-HOMOLOGOUS FAMILY PROTEIN 22		7			Os07g0227400                	LOC_Os07g12490.2, LOC_Os07g12490.1				GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0005634 - nucleus, GO:0003729 - mRNA binding		
26826	KH23	OsKH23	K-HOMOLOGOUS FAMILY PROTEIN 23	K-homologous family protein 23	K-HOMOLOGOUS FAMILY PROTEIN 23		7			Os07g0439100                 	LOC_Os07g25740.1				GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0010468 - regulation of gene expression, GO:0005634 - nucleus		PO:0009049 - inflorescence , PO:0009030 - carpel , PO:0009066 - anther 
26827	KH24	OsKH24	K-HOMOLOGOUS FAMILY PROTEIN 24	K-homologous family protein 24	K-HOMOLOGOUS FAMILY PROTEIN 24		8			Os08g0100700                  	LOC_Os08g01070.4, LOC_Os08g01070.2, LOC_Os08g01070.1				GO:0005634 - nucleus		
26828	KH25	OsKH25	K-HOMOLOGOUS FAMILY PROTEIN 25	K-homologous family protein 25	K-HOMOLOGOUS FAMILY PROTEIN 25		8			Os08g0110800                   	LOC_Os08g01930.1				GO:0005634 - nucleus, GO:0016020 - membrane, GO:0003723 - RNA binding		PO:0009047 - stem , PO:0009038 - palea , PO:0025034 - leaf , PO:0020104 - leaf sheath , PO:0009030 - carpel , PO:0009066 - anther , PO:0009049 - inflorescence , PO:0009005 - root , PO:0009089 - endosperm , PO:0009009 - plant embryo , PO:0009072 - plant ovary , PO:0009037 - lemma 
26829	KH26	OsKH26	K-HOMOLOGOUS FAMILY PROTEIN 26	K-homologous family protein 26	K-HOMOLOGOUS FAMILY PROTEIN 26		8			Os08g0200400                    	LOC_Os08g10030.2, LOC_Os08g10030.1				GO:0003729 - mRNA binding, GO:0005737 - cytoplasm, GO:0010468 - regulation of gene expression, GO:0005634 - nucleus		
26830	KH27	OsKH27	K-HOMOLOGOUS FAMILY PROTEIN 27	K-homologous family protein 27	K-HOMOLOGOUS FAMILY PROTEIN 27		9		 Tolerance and resistance - Stress tolerance	Os09g0498600                     	LOC_Os09g32300.3, LOC_Os09g32300.1, LOC_Os09g32300.2				GO:0005739 - mitochondrion, GO:0009651 - response to salt stress, GO:0005737 - cytoplasm, GO:0003729 - mRNA binding, GO:0005634 - nucleus, GO:0070161 - anchoring junction, GO:0002102 - podosome, GO:0048024 - regulation of nuclear mRNA splicing, via spliceosome, GO:0006357 - regulation of transcription from RNA polymerase II promoter, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0006001 - salt tolerance	
26831	KH29	OsKH29	K-HOMOLOGOUS FAMILY PROTEIN 29	K-homologous family protein 29	K-HOMOLOGOUS FAMILY PROTEIN 29		10		 Tolerance and resistance - Stress tolerance	Os10g0495000                      	LOC_Os10g35220.1, LOC_Os10g35220.2				GO:0009651 - response to salt stress, GO:0010468 - regulation of gene expression, GO:0005737 - cytoplasm, GO:0003729 - mRNA binding, GO:0005634 - nucleus	TO:0006001 - salt tolerance	
26832	KH30	OsKH30	K-HOMOLOGOUS FAMILY PROTEIN 30	K-homologous family protein 30	K-HOMOLOGOUS FAMILY PROTEIN 30		10			Os10g0564000                       	LOC_Os10g41440.1				GO:0009737 - response to abscisic acid stimulus, GO:0005634 - nucleus, GO:0003729 - mRNA binding, GO:0005737 - cytoplasm	TO:0000615 - abscisic acid sensitivity	
26833	KH31	OsKH31	K-HOMOLOGOUS FAMILY PROTEIN 31	K-homologous family protein 31	K-HOMOLOGOUS FAMILY PROTEIN 31		12			Os12g0597600                       	LOC_Os12g40560.1, LOC_Os12g40560.2				GO:0003729 - mRNA binding, GO:0005634 - nucleus, GO:0010468 - regulation of gene expression, GO:0005737 - cytoplasm		
26834	SNAT3	OsSNAT3	SEROTONIN N-ACETYLTRANSFERASE 3	Serotonin N-Acetyltransferase 3	SEROTONIN N-ACETYLTRANSFERASE 3		1	GO:0052858: peptidyl-lysine acetyltransferase activity. GO:0090351: seedling development. GO:1990170: stress response to cadmium ion.	 Biochemical character,  Tolerance and resistance - Stress tolerance	Os01g0610400	LOC_Os01g42470.2, LOC_Os01g42470.1				GO:0008080 - N-acetyltransferase activity, GO:0004596 - peptide alpha-N-acetyltransferase activity, GO:0007064 - mitotic sister chromatid cohesion, GO:0034976 - response to endoplasmic reticulum stress, GO:0005783 - endoplasmic reticulum, GO:0005829 - cytosol, GO:0048364 - root development, GO:0046686 - response to cadmium ion, GO:0030187 - melatonin biosynthetic process, GO:0042428 - serotonin metabolic process, GO:0005737 - cytoplasm, GO:0031415 - NatA complex, GO:0005634 - nucleus	TO:0001034 - relative plant height, TO:0001016 - relative chlorophyll content, TO:0000516 - relative root length	
26835	AL13	OsAL13	ALBINO LETHAL 13	Albino lethal 13		osal13	11	TO:0020106: Indole-3-acetic acid content.	 Character as QTL - Plant growth activity,  Coloration - Chlorophyll,  Vegetative organ - Leaf	Os11g0307600	LOC_Os11g20239.1				GO:0009507 - chloroplast, GO:0009658 - chloroplast organization, GO:0016117 - carotenoid biosynthetic process, GO:0015995 - chlorophyll biosynthetic process	TO:0000421 - pollen fertility, TO:0002715 - chloroplast development trait, TO:0000326 - leaf color, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0001015 - photosynthetic rate, TO:0002675 - gibberellic acid content, TO:0002672 - auxin content, TO:0002660 - cytokinin content, TO:0000207 - plant height, TO:0000447 - filled grain number, TO:0000019 - seedling height, TO:0000227 - root length, TO:0000455 - seed set percent, TO:0000496 - carotenoid content, TO:0000357 - growth and development trait	PO:0006036 - root epidermis , PO:0025034 - leaf , PO:0006085 - root meristem , PO:0020033 - coleoptile , PO:0005427 - sclerenchyma , PO:0005772 - exodermis 
26836	SHRG2	OsSHRG2	SEED HETEROSIS RELATED GENE 2	seed heterosis related gene 2	SEED HETEROSIS RELATED PROTEIN 2	shrg2, shrg2-1, shrg2-2, shrg2-3	2	TO:0000975: grain width.	 Character as QTL - Grain quality,  Character as QTL - Yield and productivity,  Seed - Morphological traits - Grain shape	Os02g0795600	LOC_Os02g55210.1				GO:0048316 - seed development, GO:0016020 - membrane, GO:0080112 - seed growth	TO:0000396 - grain yield, TO:0000399 - grain thickness, TO:0000653 - seed development trait, TO:0000355 - heterosis, TO:0000266 - chalky endosperm, TO:0000382 - 1000-seed weight	PO:0001170 - seed development stage 
26837	ALR3	OsAlR3	ALUMINUM RESISTANT 3			osalr3, osalr3-1, osalr3-3, osalr3- 6	1	FOLATE RECEPTOR-LIKE family protein. TO:0000995: aluminum content trait.	 Vegetative organ - Root,  Tolerance and resistance - Stress tolerance	Os01g0306800	LOC_Os01g20110.1				GO:0045454 - cell redox homeostasis, GO:0009699 - phenylpropanoid biosynthetic process, GO:0009535 - chloroplast thylakoid membrane, GO:0006979 - response to oxidative stress, GO:0032892 - positive regulation of organic acid transport, GO:0009941 - chloroplast envelope, GO:0010044 - response to aluminum ion	TO:0002657 - oxidative stress, TO:0000516 - relative root length, TO:0000605 - hydrogen peroxide content, TO:0000354 - aluminum sensitivity	
26838	LTS2	OsLTS2	LEAF TIP SENESCENCE 2	Leaf Tip Senescence 2		lts2	1	TO:0000748: leaf morphology trait. TO:0000821: leaf vein size. GO:1900056: negative regulation of leaf senescence.	 Coloration - Chlorophyll,  Vegetative organ - Leaf,  Character as QTL - Plant growth activity	Os01g0540400	LOC_Os01g35860.1				GO:0043067 - regulation of programmed cell death, GO:0010271 - regulation of chlorophyll catabolic process, GO:0010374 - stomatal complex development, GO:0009658 - chloroplast organization, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0010150 - leaf senescence, GO:0009755 - hormone-mediated signaling, GO:0043408 - regulation of MAPKKK cascade, GO:0090056 - regulation of chlorophyll metabolic process	TO:0000316 - photosynthetic ability, TO:0000346 - tiller number, TO:0000447 - filled grain number, TO:0000455 - seed set percent, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0001015 - photosynthetic rate, TO:0002715 - chloroplast development trait, TO:0000357 - growth and development trait, TO:0000293 - chlorophyll-a content, TO:0000249 - leaf senescence, TO:0000207 - plant height, TO:0000135 - leaf length, TO:0000370 - leaf width, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0000605 - hydrogen peroxide content	
26839	LTSA8	OsLTSA8	LOW-TEMPERATURE-SENSITIVE ALBINO GENE ON CHROMOSOME 8	Low-Temperature-sensitive Albino Gene on Chromosome 8		osltsa8	8	OsLTSA8  was mapped to the interval of 24,280,402-25,920,942 bp on rice chromosome 8. RNA-seq identified 18 DEGs (differentially expressed genes) within the candidate interval, and among them, the differences in the expression levels of LOC_Os08g39050 and LOC_Os08g39430 (both implicated in chlorophyll precursor synthesis) were the most significant.	 Vegetative organ - Leaf,  Tolerance and resistance - Stress tolerance,  Coloration - Chlorophyll						GO:0009409 - response to cold	TO:0000293 - chlorophyll-a content, TO:0000303 - cold tolerance, TO:0000326 - leaf color, TO:0000295 - chlorophyll-b content	
26840	CLV2B	OsCLV2b	CLAVATA 2B	CLAVATA2b	CLAVATA 2B		2			Os02g0161450/Os02g0161500	LOC_Os02g06600.1				GO:0016020 - membrane		
26841	AIP1	OsAIP1	ACETOLACTATE SYNTHASE-INTERACTING PROTEIN 1	ALS-INTERACTING PROTEIN 1, acetolactate synthase regulatory subunit	ACETOLACTATE SYNTHASE-INTERACTING PROTEIN 1		2	GO:1990610: acetolactate synthase regulator activity.	 Tolerance and resistance - Stress tolerance	Os02g0608550/Os02g0608600	LOC_Os02g39570.4, LOC_Os02g39570.5, LOC_Os02g39570.6, LOC_Os02g39570.1				GO:0009097 - isoleucine biosynthetic process, GO:0001666 - response to hypoxia, GO:0009082 - branched chain family amino acid biosynthetic process, GO:0030912 - response to deep water, GO:0005829 - cytosol, GO:0009099 - valine biosynthetic process, GO:0003984 - acetolactate synthase activity	TO:0000015 - oxygen sensitivity, TO:0000512 - Plant survival percentage under submergence, TO:0002673 - amino acid content, TO:0000524 - submergence tolerance	PO:0009051 - spikelet , PO:0009005 - root , PO:0025034 - leaf , PO:0020033 - coleoptile 
26842	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade B DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os01g0301900	LOC_Os01g19610.1				GO:0009651 - response to salt stress, GO:0005634 - nucleus, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus	TO:0006001 - salt tolerance, TO:0000276 - drought tolerance, TO:0000166 - gibberellic acid sensitivity	
26843	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade A DUF247 protein.		Os01g0319200	LOC_Os01g21650.1				GO:0016020 - membrane		PO:0009029 - stamen , PO:0009089 - endosperm 
26844	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade A DUF247 protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os01g0319400	LOC_Os01g21670.1				GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0009408 - response to heat, GO:0009737 - response to abscisic acid stimulus	TO:0000615 - abscisic acid sensitivity, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000303 - cold tolerance	PO:0009047 - stem , PO:0009029 - stamen , PO:0009089 - endosperm , PO:0009049 - inflorescence 
26845	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade A DUF247 protein.		Os01g0320100	LOC_Os01g21710.1				GO:0016020 - membrane		
26846	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade A DUF247 protein.		Os01g0561700	LOC_Os01g38120.1				GO:0016020 - membrane		
26847	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade A DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os01g0562600	LOC_Os01g38190.1				GO:0016020 - membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26848	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade B DUF247 protein.		Os01g0564600	LOC_Os01g38380.1				GO:0009507 - chloroplast, GO:0016020 - membrane		
26849	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			1	Clade B DUF247 protein.		Os01g0564950	LOC_Os01g38430.1				GO:0016020 - membrane		
26850	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			2	Clade A DUF247 protein.		Os02g0254100	LOC_Os02g15500.1				GO:0016020 - membrane, GO:0005634 - nucleus		
26851	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			3	Clade B DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os03g0163200	LOC_Os03g06730.1				GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance	
26852	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			3	Clade A DUF247 protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os03g0310600	LOC_Os03g19700.1				GO:0016020 - membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	PO:0009049 - inflorescence , PO:0009047 - stem 
26853	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			4	Clade D DUF247 protein. 		Os04g0505400	LOC_Os04g42650.1				GO:0005777 - peroxisome, GO:0016020 - membrane		
26854	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			4	Clade C DUF247 protein. 		Os04g0647425	LOC_Os04g55370.1				GO:0016020 - membrane		
26855	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			4	Clade C DUF247 protein. 			LOC_Os04g55390.1				GO:0016020 - membrane, GO:0005634 - nucleus		
26856	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			5	Clade B DUF247 protein. 	 Tolerance and resistance - Stress tolerance	Os05g0130400	LOC_Os05g03972.1				GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0016020 - membrane	TO:0006001 - salt tolerance	
26857	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			5	Clade B DUF247 protein. 	 Tolerance and resistance - Stress tolerance	Os05g0131000	LOC_Os05g04060.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0009737 - response to abscisic acid stimulus, GO:0009408 - response to heat	TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity	PO:0009047 - stem 
26858	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			5	Clade C DUF247 protein. 		Os05g0197900	LOC_Os05g10900.1				GO:0005634 - nucleus, GO:0016020 - membrane		
26859	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			5	Clade D DUF247 protein. 		Os05g0198100	LOC_Os05g10920.1				GO:0005634 - nucleus, GO:0016020 - membrane		
26860	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			5	Clade A DUF247 protein. 		Os05g0242000	LOC_Os05g15230.1				GO:0016020 - membrane		
26861	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			6	Clade B DUF247 protein. 		Os06g0160600	LOC_Os06g06550.1				GO:0016020 - membrane		
26862	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			6	Clade B DUF247 protein. 		Os06g0179500	LOC_Os06g08120.1				GO:0016020 - membrane		
26863	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			6	Clade D DUF247 protein. 		Os06g0186800	LOC_Os06g08760.1				GO:0016020 - membrane		
26864	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			6	Clade B DUF247 protein. 		Os06g0524700	LOC_Os06g33350.1				GO:0009507 - chloroplast, GO:0016020 - membrane		
26865	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			6	Clade D DUF247 protein. 			LOC_Os06g35860.1				GO:0016020 - membrane, GO:0005634 - nucleus		
26866	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			7	Clade D DUF247 protein. 		Os07g0672300	LOC_Os07g47520.1				GO:0016020 - membrane		
26867	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade B DUF247 protein. 		Os08g0120700	LOC_Os08g02710.1				GO:0016020 - membrane		
26868	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade B DUF247 protein. 		Os08g0120900	LOC_Os08g02730.1				GO:0016020 - membrane		
26869	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade D DUF247 protein. 		Os08g0121100/Os08g0121250/Os08g0121275	LOC_Os08g02750.1				GO:0016020 - membrane		
26870	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade B DUF247 protein. 		Os08g0121533	LOC_Os08g02820.1				GO:0016020 - membrane		
26871	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade D DUF247 protein. 			LOC_Os08g04530.1				GO:0016020 - membrane, GO:0009507 - chloroplast		
26872	_	OsDUF247, PPR	_	domain of unknown function 247 protein, DUF247 protein			8	Clade B DUF247 protein. Pentatricopeptide (PPR) repeat-containing protein-like.		Os08g0167400	LOC_Os08g07040.1				GO:0009507 - chloroplast, GO:0016020 - membrane		
26873	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade B DUF247 protein. 		Os08g0167400	LOC_Os08g07050.1				GO:0016020 - membrane		
26874	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade D DUF247 protein. 		Os08g0337800	LOC_Os08g25030.1				GO:0005634 - nucleus, GO:0016020 - membrane		
26875	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade D DUF247 protein. 	 Tolerance and resistance - Stress tolerance	Os08g0351200	LOC_Os08g26220.2, LOC_Os08g26220.1				GO:0009739 - response to gibberellin stimulus, GO:0009651 - response to salt stress, GO:0016020 - membrane	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	
26876	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade C DUF247 protein. 	 Tolerance and resistance - Stress tolerance	Os08g0355400	LOC_Os08g26710.1				GO:0016020 - membrane, GO:0009414 - response to water deprivation	TO:0000276 - drought tolerance	
26877	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade C DUF247 protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0356500	LOC_Os08g26820.2, LOC_Os08g26820.1				GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0009739 - response to gibberellin stimulus	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance	PO:0009049 - inflorescence , PO:0009047 - stem 
26878	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade C DUF247 protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0356700	LOC_Os08g26840.1				GO:0009737 - response to abscisic acid stimulus, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus, GO:0009408 - response to heat	TO:0000166 - gibberellic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000259 - heat tolerance, TO:0000276 - drought tolerance, TO:0000303 - cold tolerance, TO:0006001 - salt tolerance	PO:0009047 - stem , PO:0009049 - inflorescence 
26879	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade C DUF247 protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os08g0356800	LOC_Os08g26850.1				GO:0009408 - response to heat, GO:0009739 - response to gibberellin stimulus, GO:0016020 - membrane, GO:0009651 - response to salt stress, GO:0009507 - chloroplast, GO:0009737 - response to abscisic acid stimulus, GO:0009414 - response to water deprivation	TO:0000166 - gibberellic acid sensitivity, TO:0006001 - salt tolerance, TO:0000259 - heat tolerance, TO:0000615 - abscisic acid sensitivity, TO:0000276 - drought tolerance	PO:0009047 - stem , PO:0009049 - inflorescence 
26880	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade C DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os08g0395800	LOC_Os08g30520.1				GO:0005634 - nucleus, GO:0016020 - membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26881	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			8	Clade A DUF247 protein.		Os08g0538200	LOC_Os08g42570.1				GO:0016020 - membrane		
26882	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade B DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os09g0255900	LOC_Os09g08160.1				GO:0016020 - membrane, GO:0009414 - response to water deprivation, GO:0009651 - response to salt stress	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26883	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade B DUF247 protein.		Os09g0268700	LOC_Os09g09550.1				GO:0016020 - membrane		
26884	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade C DUF247 protein.		Os09g0300150	LOC_Os09g12840.1				GO:0016020 - membrane		
26885	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade C DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os09g0300800	LOC_Os09g12970.1				GO:0016020 - membrane, GO:0009651 - response to salt stress	TO:0006001 - salt tolerance	
26886	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade C DUF247 protein.		Os09g0301800	LOC_Os09g13040.1				GO:0016020 - membrane		
26887	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade D DUF247 protein.		Os09g0303100	LOC_Os09g13250.1				GO:0016020 - membrane		
26888	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade C DUF247 protein. PO:0030123: panicle inflorescence.	 Tolerance and resistance - Stress tolerance	Os09g0304500	LOC_Os09g13410.1				GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0009409 - response to cold, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus	TO:0000303 - cold tolerance, TO:0000259 - heat tolerance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance	PO:0009049 - inflorescence 
26889	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade C DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os09g0305300	LOC_Os09g13470.1				GO:0016020 - membrane, GO:0009507 - chloroplast, GO:0009651 - response to salt stress, GO:0009414 - response to water deprivation, GO:0009739 - response to gibberellin stimulus	TO:0000276 - drought tolerance, TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	
26890	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			9	Clade A DUF247 protein.		Os09g0540300	LOC_Os09g36870.1				GO:0016020 - membrane		
26891	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			10	Clade C DUF247 protein.		Os10g0449532/Os10g0449600	LOC_Os10g31170.1				GO:0016020 - membrane		
26892	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			10	Clade C DUF247 protein.		Os10g0450000	LOC_Os10g31240.1				GO:0016020 - membrane		
26893	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade D DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os11g0540600	LOC_Os11g33394.1, LOC_Os11g33394.2				GO:0009507 - chloroplast, GO:0009739 - response to gibberellin stimulus, GO:0009414 - response to water deprivation, GO:0016020 - membrane, GO:0009651 - response to salt stress	TO:0000166 - gibberellic acid sensitivity, TO:0000276 - drought tolerance, TO:0006001 - salt tolerance	
26894	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade D DUF247 protein.		Os11g0540900	LOC_Os11g33430.1				GO:0016020 - membrane, GO:0009507 - chloroplast		
26895	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade D DUF247 protein.			LOC_Os11g33440.1				GO:0016020 - membrane		
26896	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade D DUF247 protein.		Os11g0540800	LOC_Os11g33450.1				GO:0016020 - membrane		
26897	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade D DUF247 protein.		Os11g0541200	LOC_Os11g33942.1				GO:0016020 - membrane		
26898	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade B DUF247 protein.		Os11g0541300	LOC_Os11g33950.1				GO:0016020 - membrane		
26899	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade D DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os11g0541600	LOC_Os11g33970.1				GO:0009651 - response to salt stress, GO:0009739 - response to gibberellin stimulus, GO:0005634 - nucleus, GO:0016020 - membrane	TO:0006001 - salt tolerance, TO:0000166 - gibberellic acid sensitivity	
26900	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			11	Clade D DUF247 protein.	 Tolerance and resistance - Stress tolerance	Os11g0543300	LOC_Os11g34090.1				GO:0009651 - response to salt stress, GO:0016020 - membrane, GO:0005634 - nucleus	TO:0006001 - salt tolerance	
26901	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			12	Clade D DUF247 protein.		Os12g0236325	LOC_Os12g13370.1				GO:0016020 - membrane, GO:0005634 - nucleus		
26902	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			12	Clade D DUF247 protein.		Os12g0480800	LOC_Os12g29620.1				GO:0016020 - membrane		
26903	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			12	Clade D DUF247 protein.		Os12g0481000	LOC_Os12g29650.1				GO:0016020 - membrane		
26904	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			12	Clade A DUF247 protein.		Os12g0513300	LOC_Os12g32880.1				GO:0005634 - nucleus, GO:0016020 - membrane		
26905	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			12	Clade A DUF247 protein.		Os12g0513500	LOC_Os12g32900.1				GO:0016020 - membrane, GO:0005634 - nucleus		
26906	_	OsDUF247	_	domain of unknown function 247 protein, DUF247 protein			12	Clade A DUF247 protein.		Os12g0513700	LOC_Os12g32920.1				GO:0016020 - membrane		
26907	H2B.4	OsH2B.4	HISTONE H2B.4	Histone H2B.4	HISTONE H2B.4		1	Q94JJ4.		Os01g0149600	LOC_Os01g05630.1				GO:0005634 - nucleus, GO:0030527 - structural constituent of chromatin, GO:0046982 - protein heterodimerization activity, GO:0003677 - DNA binding, GO:0000786 - nucleosome		
26908	PIT2	Pit2, OsPit2	PYRICULARIA ORYZAE RESISTANCE T2	Pyricularia oryzae resistance-t2, Magnaporthe grisea resistance-t2, NLR-type resistance gene Pit2, NLR protein Pit2	NLR PROTEIN PIT2		1	AB379819.	 Tolerance and resistance - Disease resistance	Os01g0149350	LOC_Os01g05600.1				GO:0043531 - ADP binding, GO:0051707 - response to other organism, GO:0006952 - defense response, GO:0050832 - defense response to fungus, GO:0005886 - plasma membrane, GO:0005829 - cytosol, GO:0043069 - negative regulation of programmed cell death	TO:0000074 - blast disease	
26909	TWINKLE	OsTWINKLE	TWINKLE HOMOLOG	Twinkle homolog	TWINKLE HOMOLOG		6			Os06g0671700	LOC_Os06g45980.1				GO:0003697 - single-stranded DNA binding, GO:0005524 - ATP binding, GO:0043139 - 5'-3' DNA helicase activity, GO:0006260 - DNA replication		
26910	MTSSB1L	OsmtSSB1L, mtSSB1L	MITOCHONDRION-TARGETED SINGLE-STRANDED DNA-BINDING PROTEIN 1-LIKE	mitochondrion-targeted single-stranded DNA-binding protein 1-like	MITOCHONDRION-TARGETED SINGLE-STRANDED DNA-BINDING PROTEIN 1-LIKE	osmtssb1lcrp			 Seed - Morphological traits,  Seed - Physiological traits - Storage substances							TO:0002653 - endosperm storage protein content	
26911	_	OsSF3B1, SF3B1	_	core splicing factor SF3B1	_	ossf3b1	2		 Tolerance and resistance - Stress tolerance	Os02g0147300	LOC_Os02g05410.1				GO:0071013 - catalytic step 2 spliceosome, GO:0005689 - U12-type spliceosomal complex, GO:0005686 - U2 snRNP, GO:0071004 - U2-type prespliceosome, GO:0009414 - response to water deprivation, GO:0009408 - response to heat, GO:0003729 - mRNA binding, GO:0000245 - spliceosome assembly	TO:0000276 - drought tolerance, TO:0000259 - heat tolerance, TO:0000605 - hydrogen peroxide content	
26912	DLK1	OsDLK1	D14-LIKE 1	D14-LIKE1	D14-LIKE 1			Q10J20. GO:0036377: arbuscular mycorrhizal association. GO:0080167: response to karrikin.		Os03g0437600/Os11g0384789	LOC_Os03g32270.1				GO:0005634 - nucleus, GO:0016787 - hydrolase activity, GO:0005737 - cytoplasm		
26914	FKBP65D	OsFKBP65d, FKBP65d	FK506 BINDING PROTEIN 65D	FK506 binding protein 65d	FK506 BINDING PROTEIN 65D			OsFKBP65d (ChrUn.fgenesh.mRNA.20) is unanchored to any chromosome.	 Biochemical character								
26915	_	OsKCS11, KCS11	_	3-Ketoacyl-CoA synthase 11		oskcs11	3	a member of fatty acid metabolic gene cluster on chromosome 3 (FGC3). By comparing the genomic regions between indica Minghui63 and japonica Nipponbare, we found that the full-length OsKCS11 transcript should contain both Os03g06700 and Os03g06705 annotated sequences (Yang et al. 2024). PO:0030123: panicle inflorescence.	 Character as QTL - Yield and productivity,  Biochemical character,  Reproductive organ - Pollination, fertilization, fertility - Male sterility	Os03g0162650/Os03g0162800	LOC_Os03g06705.1, LOC_Os03g06700.1				GO:0010143 - cutin biosynthetic process, GO:0005783 - endoplasmic reticulum, GO:0048658 - tapetal layer development, GO:0048653 - anther development, GO:0009555 - pollen development, GO:0009922 - fatty acid elongase activity, GO:0016020 - membrane, GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups, GO:0006633 - fatty acid biosynthetic process, GO:0048437 - floral organ development	TO:0000187 - anther color, TO:0000531 - anther length, TO:0006022 - floral organ development trait, TO:0000437 - male sterility, TO:0000449 - grain yield per plant, TO:0000218 - pollen abortion type	PO:0001007 - pollen development stage , PO:0001004 - anther development stage , PO:0009049 - inflorescence , PO:0025385 - cutin 
26916	GPAT6	OsGPAT6	GLYCEROL 3-PHOSPHATE ACYLTRANSFERASE 6	glycerol 3-phosphate acyltransferase 6	GLYCEROL 3-PHOSPHATE ACYLTRANSFERASE 6	osgpat6	3	a member of fatty acid metabolic gene cluster on chromosome 3 (FGC3). GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity. PO:0030123: panicle inflorescence.	 Reproductive organ - Pollination, fertilization, fertility - Male sterility,  Character as QTL - Yield and productivity,  Biochemical character	Os03g0166600	LOC_Os03g07060.1				GO:0009555 - pollen development, GO:0016791 - phosphatase activity, GO:0016020 - membrane, GO:0048658 - tapetal layer development, GO:0005783 - endoplasmic reticulum, GO:0010143 - cutin biosynthetic process, GO:0048437 - floral organ development, GO:0048653 - anther development	TO:0000531 - anther length, TO:0006022 - floral organ development trait, TO:0000187 - anther color, TO:0000218 - pollen abortion type, TO:0000449 - grain yield per plant, TO:0000437 - male sterility	PO:0025385 - cutin , PO:0001004 - anther development stage , PO:0001007 - pollen development stage , PO:0009049 - inflorescence 
26917	SPL50	OsSPL50	SPOTTED LEAF 50	spotted leaf 50		spl50	10	an ARM repeat protein. PO:0030123: panicle inflorescence. GO:2000377: regulation of reactive oxygen species metabolic process. GO:1900150: regulation of defense response to fungus. GO:0062098: regulation of programmed necrotic cell death.	 Coloration - Chlorophyll,  Character as QTL - Yield and productivity,  Character as QTL - Plant growth activity,  Tolerance and resistance - Lesion mimic,  Tolerance and resistance - Disease resistance		LOC_Os10g05370.1				GO:0005737 - cytoplasm, GO:0050832 - defense response to fungus, GO:0009658 - chloroplast organization, GO:0009626 - plant-type hypersensitive response, GO:0006979 - response to oxidative stress, GO:0043067 - regulation of programmed cell death, GO:0010380 - regulation of chlorophyll biosynthetic process, GO:0045088 - regulation of innate immune response	TO:0000063 - mimic response, TO:0000316 - photosynthetic ability, TO:0002715 - chloroplast development trait, TO:0000605 - hydrogen peroxide content, TO:0002657 - oxidative stress, TO:0000207 - plant height, TO:0000397 - grain size, TO:0000382 - 1000-seed weight, TO:0000152 - panicle number, TO:0000447 - filled grain number, TO:0000547 - primary branch number, TO:0000557 - secondary branch number, TO:0000449 - grain yield per plant, TO:0000455 - seed set percent, TO:0000293 - chlorophyll-a content, TO:0000295 - chlorophyll-b content, TO:0000496 - carotenoid content, TO:0001027 - net photosynthetic rate, TO:0000522 - stomatal conductance, TO:0001018 - transpiration rate, TO:0000074 - blast disease	PO:0009047 - stem , PO:0025034 - leaf , PO:0009049 - inflorescence , PO:0020104 - leaf sheath , PO:0009005 - root 
26918	DES1	OsDes1	DELAYED SENESCENCE 1	delayed senescence 1, delayed senescence 1-Dominant		des1-D, OsDes1-KN	7	an atypical Dof transcriptional factor. GO:1900056: negative regulation of leaf senescence. GO:1900426: positive regulation of defense response to bacterium. GO:1900150: regulation of defense response to fungus.	 Tolerance and resistance - Disease resistance,  Character as QTL - Yield and productivity,  Vegetative organ - Leaf,  Coloration - Chlorophyll	Os07g0145800	LOC_Os07g05210.1				GO:0010150 - leaf senescence, GO:0042742 - defense response to bacterium, GO:0009738 - abscisic acid mediated signaling, GO:0009867 - jasmonic acid mediated signaling pathway, GO:0009737 - response to abscisic acid stimulus, GO:0009753 - response to jasmonic acid stimulus, GO:0009789 - positive regulation of abscisic acid mediated signaling, GO:0080141 - regulation of jasmonic acid biosynthetic process, GO:0050832 - defense response to fungus	TO:0000326 - leaf color, TO:0000249 - leaf senescence, TO:0000396 - grain yield, TO:0000074 - blast disease, TO:0000175 - bacterial blight disease resistance, TO:0000172 - jasmonic acid sensitivity, TO:0000615 - abscisic acid sensitivity, TO:0000447 - filled grain number, TO:0000449 - grain yield per plant, TO:0000495 - chlorophyll content	
26919	NCED2A	OsNCED2a, NCED2a	9-CIS-EPOXYCAROTENOID DIOXYGENASE 2A		9-CIS-EPOXYCAROTENOID DIOXYGENASE 2A		4		 Biochemical character	Os04g0131800	LOC_Os04g04230.1				GO:0005737 - cytoplasm, GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0046872 - metal ion binding		PO:0007073 - 2 formation of axillary shoot stage , PO:0007041 - inflorescence emergence stage 
26920	CCD4B	OsCCD4b, CCD4b	CAROTENOID CLEAVAGE DIOXYGENASE 4B		CAROTENOID CLEAVAGE DIOXYGENASE 4B		10		 Biochemical character	Os10g0170700	LOC_Os10g08980.1				GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, GO:0046872 - metal ion binding, GO:0009507 - chloroplast		
26921	ASC1	OsASC1	_				2	Q6EUN0. GO:1904629: response to diterpene.	 Character as QTL - Plant growth activity	Os02g0581300	LOC_Os02g37080.2, LOC_Os02g37080.1				GO:0031965 - nuclear membrane, GO:0005886 - plasma membrane, GO:0046513 - ceramide biosynthetic process, GO:0050291 - sphingosine N-acyltransferase activity, GO:0005789 - endoplasmic reticulum membrane, GO:0005783 - endoplasmic reticulum	TO:0000019 - seedling height, TO:0000357 - growth and development trait, TO:0000571 - shoot fresh weight	PO:0025034 - leaf 
26922	BUD13	OsBUD13	_				8	Q6EUN0. GO:1904629: response to diterpene.	 Character as QTL - Plant growth activity	Os08g0178300	LOC_Os08g08080.2, LOC_Os08g08080.1				GO:0005634 - nucleus, GO:0000398 - nuclear mRNA splicing, via spliceosome, GO:0005684 - U2-type spliceosomal complex, GO:0070274 - RES complex	TO:0000019 - seedling height, TO:0000357 - growth and development trait, TO:0000571 - shoot fresh weight	PO:0025034 - leaf 
